Query 007039
Match_columns 620
No_of_seqs 243 out of 2591
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-35 3.7E-40 325.4 27.6 514 22-606 18-558 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-35 1.3E-39 321.0 31.5 512 40-617 14-543 (606)
3 3rgz_A Protein brassinosteroid 100.0 6.9E-35 2.4E-39 326.3 25.7 438 36-507 99-551 (768)
4 3t6q_A CD180 antigen; protein- 100.0 6.5E-34 2.2E-38 311.3 32.8 518 24-606 21-560 (606)
5 3t6q_A CD180 antigen; protein- 100.0 7E-34 2.4E-38 311.1 29.6 515 40-617 15-546 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-33 1.5E-37 308.9 35.8 487 23-536 12-546 (680)
7 3rgz_A Protein brassinosteroid 100.0 1.2E-33 4.2E-38 316.2 26.1 193 36-240 150-376 (768)
8 2z63_A TOLL-like receptor 4, v 100.0 2.4E-32 8E-37 296.9 32.5 496 22-606 14-531 (570)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-31 6.5E-36 295.8 38.9 531 40-612 7-577 (680)
10 2z63_A TOLL-like receptor 4, v 100.0 1.1E-31 3.6E-36 291.7 28.4 492 40-617 10-517 (570)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-31 1.1E-35 286.4 30.3 484 43-608 11-512 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-31 9.7E-36 300.2 27.9 349 22-404 11-391 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 8.3E-30 2.9E-34 288.1 29.1 514 40-615 7-547 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-30 9.1E-35 277.2 21.9 467 40-606 3-481 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-29 2.1E-33 268.6 32.3 482 58-618 4-497 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 6.8E-29 2.3E-33 273.3 31.4 516 23-604 39-578 (635)
17 4eco_A Uncharacterized protein 100.0 1.8E-29 6E-34 276.1 21.2 449 37-607 81-633 (636)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-28 3.8E-33 266.8 24.5 470 57-606 29-510 (562)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-28 9.2E-33 261.6 27.2 450 26-577 11-479 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 1.7E-28 5.8E-33 272.7 20.8 392 37-506 323-839 (876)
21 4eco_A Uncharacterized protein 100.0 4.7E-28 1.6E-32 264.8 21.0 421 59-606 81-600 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 1E-27 3.5E-32 266.5 23.2 450 59-607 323-873 (876)
23 1o6v_A Internalin A; bacterial 100.0 3.7E-27 1.3E-31 248.7 25.4 342 36-505 45-386 (466)
24 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-26 1E-30 252.3 27.6 514 43-616 37-564 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-26 9.1E-31 248.2 25.4 453 39-577 33-508 (562)
26 1o6v_A Internalin A; bacterial 99.9 1.2E-25 4.3E-30 237.0 26.4 343 57-537 44-386 (466)
27 3v47_A TOLL-like receptor 5B a 99.9 1.1E-25 3.6E-30 237.2 22.1 173 41-226 14-196 (455)
28 3v47_A TOLL-like receptor 5B a 99.9 2.5E-25 8.7E-30 234.3 23.2 163 25-191 20-193 (455)
29 4fmz_A Internalin; leucine ric 99.9 3.2E-25 1.1E-29 224.7 21.1 301 36-405 43-344 (347)
30 1jl5_A Outer protein YOPM; leu 99.9 1.2E-25 4E-30 235.0 18.4 402 36-606 10-429 (454)
31 1jl5_A Outer protein YOPM; leu 99.9 1.8E-24 6.2E-29 226.1 18.6 177 34-239 31-222 (454)
32 3bz5_A Internalin-J, INLJ; leu 99.9 8.7E-24 3E-28 221.1 23.1 165 36-224 41-205 (457)
33 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-23 5.4E-28 219.1 24.7 181 57-266 40-221 (457)
34 2id5_A Lingo-1, leucine rich r 99.9 1.7E-23 5.9E-28 221.6 24.8 107 369-505 225-331 (477)
35 3o6n_A APL1; leucine-rich repe 99.9 1.3E-23 4.4E-28 216.4 22.7 304 56-450 42-349 (390)
36 4fmz_A Internalin; leucine ric 99.9 1.6E-23 5.5E-28 212.2 22.5 282 31-378 60-343 (347)
37 3ogk_B Coronatine-insensitive 99.9 2E-25 7E-30 243.3 5.5 384 57-505 71-499 (592)
38 3oja_B Anopheles plasmodium-re 99.9 8.1E-23 2.8E-27 222.1 25.9 304 57-505 49-356 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 3.4E-23 1.1E-27 213.3 21.3 304 83-505 43-350 (390)
40 2id5_A Lingo-1, leucine rich r 99.9 1E-22 3.5E-27 215.7 23.2 177 34-221 29-211 (477)
41 3oja_B Anopheles plasmodium-re 99.9 3.2E-22 1.1E-26 217.4 23.0 301 36-451 50-356 (597)
42 3ogk_B Coronatine-insensitive 99.9 5.1E-24 1.7E-28 232.3 8.5 442 75-602 63-547 (592)
43 2p1m_B Transport inhibitor res 99.9 2.1E-23 7.1E-28 227.5 2.4 410 57-538 64-518 (594)
44 2p1m_B Transport inhibitor res 99.9 3.8E-23 1.3E-27 225.4 3.1 403 36-506 65-518 (594)
45 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-21 8.5E-26 194.6 15.2 292 60-405 34-331 (332)
46 1xku_A Decorin; proteoglycan, 99.9 8.8E-21 3E-25 190.4 18.7 292 60-404 32-329 (330)
47 4fcg_A Uncharacterized protein 99.9 3E-21 1E-25 193.1 13.9 130 83-222 79-218 (328)
48 1ogq_A PGIP-2, polygalacturona 99.8 7.8E-21 2.7E-25 188.9 14.9 174 37-222 50-233 (313)
49 2z80_A TOLL-like receptor 2, v 99.8 3.2E-20 1.1E-24 188.2 17.8 264 41-322 35-312 (353)
50 1ozn_A Reticulon 4 receptor; N 99.8 3.8E-20 1.3E-24 181.7 17.4 191 26-228 22-219 (285)
51 4fcg_A Uncharacterized protein 99.8 1.6E-20 5.4E-25 187.9 14.7 193 36-241 80-286 (328)
52 1xku_A Decorin; proteoglycan, 99.8 3.1E-19 1.1E-23 179.1 19.6 287 38-349 32-328 (330)
53 1z7x_W Ribonuclease inhibitor; 99.8 4.4E-21 1.5E-25 202.3 5.3 157 59-221 3-181 (461)
54 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-19 6.6E-24 180.8 16.4 288 38-351 34-331 (332)
55 2z80_A TOLL-like receptor 2, v 99.8 1.4E-19 4.6E-24 183.6 15.4 225 57-321 29-259 (353)
56 2z66_A Variable lymphocyte rec 99.8 1.4E-19 4.6E-24 179.7 14.0 171 42-223 12-188 (306)
57 1ogq_A PGIP-2, polygalacturona 99.8 9.3E-20 3.2E-24 181.1 11.1 154 59-224 50-211 (313)
58 3zyj_A Leucine-rich repeat-con 99.8 4.8E-19 1.6E-23 185.1 16.4 188 39-239 45-238 (440)
59 2z66_A Variable lymphocyte rec 99.8 8E-19 2.7E-23 174.1 16.8 231 24-268 16-259 (306)
60 3zyi_A Leucine-rich repeat-con 99.8 6E-19 2.1E-23 185.0 15.9 177 39-228 56-236 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 1.7E-18 6E-23 180.9 18.7 232 23-269 51-291 (440)
62 3zyi_A Leucine-rich repeat-con 99.8 2.4E-18 8.3E-23 180.4 18.8 230 24-268 63-301 (452)
63 1ozn_A Reticulon 4 receptor; N 99.8 2.7E-18 9.4E-23 168.4 17.6 192 39-242 13-211 (285)
64 1p9a_G Platelet glycoprotein I 99.8 7.8E-18 2.7E-22 165.0 18.2 191 36-239 9-202 (290)
65 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-17 8E-22 177.5 23.1 169 36-239 39-208 (622)
66 1h6u_A Internalin H; cell adhe 99.8 1.4E-17 4.9E-22 164.8 19.8 187 36-242 40-227 (308)
67 2o6q_A Variable lymphocyte rec 99.8 1.5E-17 5.1E-22 161.6 19.4 191 37-239 16-212 (270)
68 2o6q_A Variable lymphocyte rec 99.8 1.4E-17 4.8E-22 161.8 18.7 187 24-222 25-217 (270)
69 1z7x_W Ribonuclease inhibitor; 99.8 6.7E-20 2.3E-24 193.2 2.3 351 37-405 3-409 (461)
70 2z62_A TOLL-like receptor 4, v 99.8 6.2E-18 2.1E-22 165.0 15.7 184 34-229 25-219 (276)
71 3o53_A Protein LRIM1, AGAP0063 99.8 4E-19 1.4E-23 177.0 5.6 246 57-356 32-278 (317)
72 2z62_A TOLL-like receptor 4, v 99.7 7.2E-17 2.5E-21 157.4 19.0 217 42-269 12-236 (276)
73 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.5E-21 155.8 18.9 174 36-222 40-217 (272)
74 1h6u_A Internalin H; cell adhe 99.7 1.2E-16 4.2E-21 158.1 19.0 179 31-228 57-235 (308)
75 3rfs_A Internalin B, repeat mo 99.7 1.7E-17 5.8E-22 161.3 12.1 188 38-239 20-212 (272)
76 1wwl_A Monocyte differentiatio 99.7 2E-17 6.8E-22 164.3 12.6 215 39-266 65-305 (312)
77 1h6t_A Internalin B; cell adhe 99.7 9.1E-17 3.1E-21 157.6 17.0 172 36-226 45-216 (291)
78 1p9a_G Platelet glycoprotein I 99.7 7.3E-17 2.5E-21 158.1 16.0 183 25-222 20-207 (290)
79 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-16 8.1E-21 169.7 21.0 246 24-322 49-295 (622)
80 3m19_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 152.4 17.6 174 38-223 15-192 (251)
81 3o53_A Protein LRIM1, AGAP0063 99.7 9.4E-18 3.2E-22 167.1 8.4 209 36-267 33-247 (317)
82 2xwt_C Thyrotropin receptor; s 99.7 2.7E-17 9.2E-22 156.7 10.5 198 27-239 23-233 (239)
83 3m19_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 148.9 16.7 164 24-191 23-192 (251)
84 3oja_A Leucine-rich immune mol 99.7 9E-17 3.1E-21 169.4 10.5 209 36-267 33-247 (487)
85 1h6t_A Internalin B; cell adhe 99.7 1.1E-15 3.7E-20 149.9 16.8 184 39-242 26-210 (291)
86 2xwt_C Thyrotropin receptor; s 99.7 2.2E-16 7.6E-21 150.3 11.4 158 49-220 23-189 (239)
87 1m9s_A Internalin B; cell inva 99.7 1.1E-15 3.8E-20 164.3 16.6 173 36-227 42-214 (605)
88 3oja_A Leucine-rich immune mol 99.7 2.5E-16 8.7E-21 166.0 11.3 166 57-239 32-198 (487)
89 2ast_B S-phase kinase-associat 99.6 9E-17 3.1E-21 161.6 7.2 217 37-266 47-281 (336)
90 1xeu_A Internalin C; cellular 99.6 4.1E-16 1.4E-20 150.4 9.9 171 36-226 18-188 (263)
91 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.8E-20 140.6 11.9 150 57-223 42-194 (197)
92 4ezg_A Putative uncharacterize 99.6 2E-15 6.7E-20 139.0 12.9 148 36-191 43-194 (197)
93 3e6j_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 139.7 15.6 151 37-191 19-172 (229)
94 1wwl_A Monocyte differentiatio 99.6 1.2E-15 4.1E-20 151.5 11.3 192 36-243 94-307 (312)
95 2o6s_A Variable lymphocyte rec 99.6 2.4E-15 8.3E-20 139.8 12.7 163 40-221 10-176 (208)
96 4glp_A Monocyte differentiatio 99.6 4.4E-16 1.5E-20 154.5 7.3 179 57-243 89-283 (310)
97 2v9t_B SLIT homolog 2 protein 99.6 7E-15 2.4E-19 137.7 14.0 148 40-191 14-165 (220)
98 2v70_A SLIT-2, SLIT homolog 2 99.6 9.1E-15 3.1E-19 136.9 14.0 148 40-191 14-166 (220)
99 1m9s_A Internalin B; cell inva 99.6 1.1E-14 3.7E-19 156.6 15.1 184 38-241 22-206 (605)
100 4ay9_X Follicle-stimulating ho 99.6 5.5E-15 1.9E-19 149.2 11.3 150 35-187 28-186 (350)
101 1xeu_A Internalin C; cellular 99.6 1.6E-14 5.3E-19 139.3 13.1 147 35-191 39-185 (263)
102 2xot_A Amphoterin-induced prot 99.6 1.4E-14 4.8E-19 146.8 12.7 172 40-223 21-202 (361)
103 2ast_B S-phase kinase-associat 99.6 8.6E-15 2.9E-19 147.1 10.4 195 37-242 70-282 (336)
104 4ay9_X Follicle-stimulating ho 99.6 1.7E-14 5.7E-19 145.6 12.5 119 63-187 13-137 (350)
105 2ca6_A RAN GTPase-activating p 99.5 1.9E-15 6.7E-20 154.9 5.4 183 36-223 31-257 (386)
106 2v9t_B SLIT homolog 2 protein 99.5 3.5E-14 1.2E-18 132.9 13.5 147 62-222 14-164 (220)
107 3cvr_A Invasion plasmid antige 99.5 7.5E-14 2.6E-18 148.3 16.8 177 37-240 59-238 (571)
108 4glp_A Monocyte differentiatio 99.5 1.5E-14 5.3E-19 143.3 10.8 190 36-240 90-302 (310)
109 2o6s_A Variable lymphocyte rec 99.5 2.5E-14 8.6E-19 132.9 11.4 150 34-193 25-180 (208)
110 2xot_A Amphoterin-induced prot 99.5 3.5E-14 1.2E-18 143.9 13.2 123 63-191 22-149 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 6.4E-14 2.2E-18 131.1 13.6 147 62-222 14-165 (220)
112 3goz_A Leucine-rich repeat-con 99.5 1.9E-14 6.4E-19 146.1 9.5 182 36-224 21-239 (362)
113 2ca6_A RAN GTPase-activating p 99.5 6.4E-15 2.2E-19 151.0 5.9 161 57-222 30-228 (386)
114 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 129.2 15.1 148 61-223 21-172 (229)
115 2ell_A Acidic leucine-rich nuc 99.5 6.9E-14 2.4E-18 125.0 11.0 137 85-227 24-164 (168)
116 2ell_A Acidic leucine-rich nuc 99.5 6.7E-14 2.3E-18 125.1 10.4 130 36-170 23-163 (168)
117 3goz_A Leucine-rich repeat-con 99.5 5.1E-14 1.7E-18 142.8 9.1 146 43-191 4-180 (362)
118 3cvr_A Invasion plasmid antige 99.5 4.7E-13 1.6E-17 142.3 15.9 159 35-224 78-244 (571)
119 2je0_A Acidic leucine-rich nuc 99.5 2.4E-13 8.1E-18 118.8 10.4 122 36-161 16-148 (149)
120 2je0_A Acidic leucine-rich nuc 99.5 1.5E-13 5E-18 120.2 8.9 124 59-185 17-147 (149)
121 4b8c_D Glucose-repressible alc 99.4 1.9E-13 6.4E-18 150.8 11.1 156 36-193 172-331 (727)
122 2wfh_A SLIT homolog 2 protein 99.4 7.4E-13 2.5E-17 121.0 13.1 124 62-191 13-139 (193)
123 1w8a_A SLIT protein; signaling 99.4 8.4E-13 2.9E-17 120.6 10.8 122 40-164 11-137 (192)
124 1a9n_A U2A', U2A'; complex (nu 99.4 3.4E-13 1.2E-17 121.5 7.9 123 37-163 19-150 (176)
125 1a9n_A U2A', U2A'; complex (nu 99.4 7.5E-13 2.6E-17 119.2 9.3 134 53-191 13-153 (176)
126 1w8a_A SLIT protein; signaling 99.4 4.3E-12 1.5E-16 115.9 12.5 124 62-191 11-139 (192)
127 4b8c_D Glucose-repressible alc 99.3 3.9E-13 1.3E-17 148.3 5.7 131 57-191 222-354 (727)
128 2o6r_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 111.4 13.3 122 40-164 10-135 (177)
129 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.8E-16 112.4 13.8 123 40-166 13-139 (193)
130 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 110.9 13.2 125 61-191 9-137 (177)
131 1dce_A Protein (RAB geranylger 99.3 2.1E-11 7.2E-16 130.2 13.9 150 57-217 407-567 (567)
132 1ds9_A Outer arm dynein; leuci 99.3 2.7E-13 9.2E-18 124.7 -0.7 106 82-190 45-152 (198)
133 1dce_A Protein (RAB geranylger 99.3 2E-11 6.9E-16 130.4 13.3 193 36-238 348-566 (567)
134 1ds9_A Outer arm dynein; leuci 99.2 3.4E-13 1.2E-17 124.0 -2.7 147 39-191 25-185 (198)
135 2r9u_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 105.6 10.8 100 88-190 15-117 (174)
136 3g39_A Variable lymphocyte rec 99.2 8.9E-11 3E-15 104.7 10.8 100 88-190 12-114 (170)
137 2r9u_A Variable lymphocyte rec 99.1 5.4E-10 1.9E-14 99.9 11.7 103 62-170 15-121 (174)
138 3sb4_A Hypothetical leucine ri 99.1 1.2E-10 4.2E-15 116.1 7.4 77 152-239 225-304 (329)
139 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 97.4 11.6 99 61-164 11-113 (170)
140 3sb4_A Hypothetical leucine ri 98.9 1.8E-09 6E-14 107.7 8.6 57 129-187 225-283 (329)
141 3un9_A NLR family member X1; l 98.9 8.6E-10 2.9E-14 111.4 6.0 158 59-223 72-252 (372)
142 3un9_A NLR family member X1; l 98.8 9.1E-10 3.1E-14 111.2 2.1 156 34-191 69-252 (372)
143 2ifg_A High affinity nerve gro 98.8 1.2E-08 4.3E-13 102.4 9.6 97 64-164 13-114 (347)
144 2ifg_A High affinity nerve gro 98.7 4.3E-08 1.5E-12 98.4 9.5 100 89-191 12-116 (347)
145 4fs7_A Uncharacterized protein 98.6 6.1E-07 2.1E-11 91.6 14.7 61 76-138 62-125 (394)
146 4fdw_A Leucine rich hypothetic 98.6 9.6E-07 3.3E-11 89.9 15.8 216 37-267 135-355 (401)
147 4fdw_A Leucine rich hypothetic 98.5 1.2E-06 4E-11 89.3 15.2 212 37-266 157-379 (401)
148 3e4g_A ATP synthase subunit S, 98.5 1E-07 3.4E-12 83.6 5.0 39 469-509 62-100 (176)
149 3e4g_A ATP synthase subunit S, 98.5 7E-08 2.4E-12 84.6 3.6 72 437-509 82-154 (176)
150 2ra8_A Uncharacterized protein 98.4 4.1E-07 1.4E-11 90.9 8.1 181 36-222 106-319 (362)
151 4fs7_A Uncharacterized protein 98.4 5.4E-06 1.8E-10 84.6 15.3 302 57-403 69-375 (394)
152 1io0_A Tropomodulin; LRR prote 98.1 3.7E-06 1.3E-10 75.6 6.7 109 81-190 32-163 (185)
153 2ra8_A Uncharacterized protein 98.1 3E-06 1E-10 84.7 6.5 171 34-221 136-341 (362)
154 4gt6_A Cell surface protein; l 98.1 0.00023 8E-09 72.3 19.8 111 74-188 52-170 (394)
155 1io0_A Tropomodulin; LRR prote 98.0 6.6E-06 2.3E-10 73.9 5.5 108 57-164 34-162 (185)
156 4gt6_A Cell surface protein; l 97.9 0.0004 1.4E-08 70.6 17.9 146 57-219 61-214 (394)
157 3rw6_A Nuclear RNA export fact 97.9 1.9E-05 6.5E-10 74.7 7.0 102 82-184 138-257 (267)
158 3rw6_A Nuclear RNA export fact 97.8 9.1E-06 3.1E-10 76.9 3.0 62 127-191 167-233 (267)
159 4h09_A Hypothetical leucine ri 96.1 0.023 8E-07 57.0 10.4 126 80-218 212-341 (379)
160 4h09_A Hypothetical leucine ri 95.6 0.064 2.2E-06 53.7 11.0 144 83-239 192-340 (379)
161 3rfe_A Platelet glycoprotein I 95.1 0.035 1.2E-06 45.9 6.0 55 134-191 12-68 (130)
162 3rfe_A Platelet glycoprotein I 94.8 0.042 1.4E-06 45.4 5.6 34 86-119 32-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.5 0.1 3.6E-06 46.3 7.9 81 83-163 39-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 93.5 0.077 2.6E-06 47.1 5.0 116 103-221 36-168 (197)
165 2a5y_B CED-4; apoptosis; HET: 68.8 1.1 3.8E-05 47.2 0.3 18 1-18 456-473 (549)
166 2lz0_A Uncharacterized protein 30.3 43 0.0015 25.5 3.5 35 466-503 18-52 (100)
167 2lz0_A Uncharacterized protein 26.1 48 0.0017 25.2 3.1 43 74-117 9-52 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-35 Score=325.40 Aligned_cols=514 Identities=16% Similarity=0.126 Sum_probs=317.2
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 99 (620)
..+.+...+|. ++++++|+|++++|.+..++. ..++++|++|++++|.+ ..+++..|.++++|++|++++|.+..
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 18 CMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred ccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccc
Confidence 34455555564 567899999999999987765 33899999999999987 56655557899999999999999988
Q ss_pred C-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHH
Q 007039 100 L-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (620)
Q Consensus 100 l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l 174 (620)
+ |..|+++++|++|++++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|. +..+++..+
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 173 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDL 173 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTT
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhh
Confidence 7 7889999999999999999887 4 78999999999999999887 579999999999999999998 666665557
Q ss_pred hCCcCCc----EEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC--CCCCcccc-cCceEEEEEeCCCCCC
Q 007039 175 SKLSQLE----ELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE--ILPPDFVS-VELQRYKIRIGDGPED 247 (620)
Q Consensus 175 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~-~~L~~L~l~~~~~~~~ 247 (620)
+.+.+|+ .|++++|.+... ........+|+.|+++++... ..+..+.. +.++.+.+........
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l~~~---------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPIDFI---------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCCCEE---------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred hhhhccccccceeeccCCCccee---------CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 7776665 799999887622 122223347888999887643 22222233 6666666654332211
Q ss_pred CCCc-----cccccc--cccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEecc
Q 007039 248 EFDP-----LLVKSE--ASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD 320 (620)
Q Consensus 248 ~~~~-----~~~~~~--~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 320 (620)
.... .+.... .++.+.+.......... +. ...+++|+.|++.++... .+ +.+..+++|++|++++
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~-~~--~~~l~~L~~L~l~~~~~~-~l----~~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI-VK--FHCLANVSAMSLAGVSIK-YL----EDVPKHFKWQSLSIIR 316 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG-GS--CGGGTTCSEEEEESCCCC-CC----CCCCTTCCCSEEEEES
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccc-cc--cccCCCCCEEEecCccch-hh----hhccccccCCEEEccc
Confidence 1100 011111 34445553322211111 11 234567777777766532 22 1255778888888888
Q ss_pred CCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeec-chhHHHHhcccceE
Q 007039 321 CSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF-SFSMAKNLLRLQKV 399 (620)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L 399 (620)
|.- ..++ .. .+++|++|+++++....... ...+++|+.|++.++ .++... ....+..+++|++|
T Consensus 317 n~l-~~lp------~~-~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 317 CQL-KQFP------TL-DLPFLKSLTLTMNKGSISFK------KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCC-SSCC------CC-CCSSCCEEEEESCSSCEECC------CCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEE
T ss_pred ccC-cccc------cC-CCCccceeeccCCcCccchh------hccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEe
Confidence 853 3332 23 77888888888875544331 456788888888875 444442 12345778888888
Q ss_pred EEEecCCcccccccCCCCCCCCcc-ccccccC--CCC-ccccccCccceEecCCccccccccccCCccccccCCccEEEE
Q 007039 400 KVEDCDDLKMIIGPDMEKPPTTQG-FIEINAE--DDP-VHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTV 475 (620)
Q Consensus 400 ~l~~c~~l~~~~~~~~~~~~~l~~-~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i 475 (620)
++++|. +..++ ......+.++. .+..+.- ... ..+..+++|+.|++++|. +....... +..+++|++|++
T Consensus 382 ~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l 455 (606)
T 3vq2_A 382 DLSFNG-AIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGI---FLGLTSLNTLKM 455 (606)
T ss_dssp ECCSCS-EEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTT---TTTCTTCCEEEC
T ss_pred ECCCCc-cccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchhh---hcCCCCCCEEEC
Confidence 888765 33333 22222233322 1111110 001 123445566666666652 32221111 224566666666
Q ss_pred ecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCc
Q 007039 476 WSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQP 555 (620)
Q Consensus 476 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l 555 (620)
++| .++....+..+..+++|++|++++|. ++.+ .++.... +++|++|+++++. ++.+
T Consensus 456 ~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~------l~~L~~L~Ls~N~-l~~~------------- 512 (606)
T 3vq2_A 456 AGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQI-SWGVFDT------LHRLQLLNMSHNN-LLFL------------- 512 (606)
T ss_dssp TTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEE-CTTTTTT------CTTCCEEECCSSC-CSCE-------------
T ss_pred CCC-cCCCcchHHhhccCCCCCEEECCCCc-CCcc-Chhhhcc------cccCCEEECCCCc-CCCc-------------
Confidence 664 33331113445556666666666653 3221 1222222 5566666666552 2221
Q ss_pred cccccccccCCCccEEEeccccchhhhccccccCCccc-CccEEEeccCcCc
Q 007039 556 QSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFS-KLKKLKISGCNNL 606 (620)
Q Consensus 556 ~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~-sL~~L~i~~C~~l 606 (620)
.|..+..+++|++|++++| .++.+|.. +.+++ +|++|++.++|-.
T Consensus 513 --~~~~~~~l~~L~~L~l~~N-~l~~~p~~---~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 513 --DSSHYNQLYSLSTLDCSFN-RIETSKGI---LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp --EGGGTTTCTTCCEEECTTS-CCCCEESC---GGGSCTTCCEEECCSCCCC
T ss_pred --CHHHccCCCcCCEEECCCC-cCcccCHh---HhhhcccCcEEEccCCCcc
Confidence 2556677888888888888 47777665 34565 5888888776543
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-35 Score=320.98 Aligned_cols=512 Identities=12% Similarity=0.106 Sum_probs=346.4
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
++++.+++.+..+|.... +++++|++++|.. ..++...|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 578889999999887543 8999999999998 666665679999999999999999886 668999999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCcccc-ccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
.+.. |..|+++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC
Confidence 9887 688999999999999999999876 679999999999999998333 46765 999999999999999876322
Q ss_pred ccCCCCcchhhhcCCCC-CCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccc--cc
Q 007039 195 VEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK--KV 270 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~ 270 (620)
...+..+.+++. +.+|++++|....++..... .+|+.|++..+..........+..++.++.+.+.... ..
T Consensus 170 -----~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 170 -----VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp -----TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred -----hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 123445555554 66899999998888887766 7899999976543211111225566677776665411 11
Q ss_pred ccccchhHHHHHhc-----cccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 271 SILQENDGTKMLLQ-----RTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 271 ~~i~~~~~~~~~l~-----~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
..+..... ..+. .++.+.+........... .+..+++|+.|+++++.. ..++ ....+++|++|
T Consensus 245 ~~l~~~~~--~~~~~l~~l~l~~l~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~-~~l~------~l~~~~~L~~L 312 (606)
T 3vq2_A 245 RNLEIFEP--SIMEGLCDVTIDEFRLTYTNDFSDDIV---KFHCLANVSAMSLAGVSI-KYLE------DVPKHFKWQSL 312 (606)
T ss_dssp CCCSCCCG--GGGTTGGGSEEEEEEECCCTTCCGGGG---SCGGGTTCSEEEEESCCC-CCCC------CCCTTCCCSEE
T ss_pred CcccccCh--HHhhhhhhccHhheecccccccccccc---ccccCCCCCEEEecCccc-hhhh------hccccccCCEE
Confidence 11110000 0122 344444433333333222 255889999999999853 3232 55678899999
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccccc--ccCCCCCCCCcc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII--GPDMEKPPTTQG 423 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~l~~ 423 (620)
++.+|.- ..++ .. .+++|++|++.+|..+...+ +..+++|++|+++++. +.... .......+.++.
T Consensus 313 ~l~~n~l-~~lp-----~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 313 SIIRCQL-KQFP-----TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp EEESCCC-SSCC-----CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCE
T ss_pred EcccccC-cccc-----cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCc-cCCCcchhhhhccCCcccE
Confidence 9999874 5544 14 79999999999997766552 3589999999999875 33321 112223333333
Q ss_pred -ccccccCC-CCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEE
Q 007039 424 -FIEINAED-DPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEI 501 (620)
Q Consensus 424 -~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 501 (620)
.+..|.-. .+..+..+++|+.|+++++ .+..+.. ...+..+++|++|++++| .++.. .+..+..+++|++|++
T Consensus 381 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 381 LDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTE--FSAFLSLEKLLYLDISYT-NTKID-FDGIFLGLTSLNTLKM 455 (606)
T ss_dssp EECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTT--TTTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEEC
T ss_pred eECCCCccccchhhccCCCCCCeeECCCC-ccCCccC--hhhhhccccCCEEECcCC-CCCcc-chhhhcCCCCCCEEEC
Confidence 11111100 0123445677777777776 3333221 012235777777777775 34444 2345667777777777
Q ss_pred cccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhh
Q 007039 502 RNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRK 581 (620)
Q Consensus 502 ~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~ 581 (620)
++|.--.. ..+..... +++|++|+++++ .++.+ .|..+..+++|++|++++| .++.
T Consensus 456 ~~n~l~~~-~~~~~~~~------l~~L~~L~Ls~n-~l~~~---------------~~~~~~~l~~L~~L~Ls~N-~l~~ 511 (606)
T 3vq2_A 456 AGNSFKDN-TLSNVFAN------TTNLTFLDLSKC-QLEQI---------------SWGVFDTLHRLQLLNMSHN-NLLF 511 (606)
T ss_dssp TTCEEGGG-EECSCCTT------CTTCCEEECTTS-CCCEE---------------CTTTTTTCTTCCEEECCSS-CCSC
T ss_pred CCCcCCCc-chHHhhcc------CCCCCEEECCCC-cCCcc---------------ChhhhcccccCCEEECCCC-cCCC
Confidence 77643221 11333333 667777777776 23322 1345678899999999999 5776
Q ss_pred hccccccCCcccCccEEEeccCcCcccccchhhhhh
Q 007039 582 IWHHQLASKSFSKLKKLKISGCNNLLNIFPPLVRLL 617 (620)
Q Consensus 582 l~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~~~ 617 (620)
+.+.. +.++++|++|++++|. +++ +|..+..+
T Consensus 512 ~~~~~--~~~l~~L~~L~l~~N~-l~~-~p~~~~~l 543 (606)
T 3vq2_A 512 LDSSH--YNQLYSLSTLDCSFNR-IET-SKGILQHF 543 (606)
T ss_dssp EEGGG--TTTCTTCCEEECTTSC-CCC-EESCGGGS
T ss_pred cCHHH--ccCCCcCCEEECCCCc-Ccc-cCHhHhhh
Confidence 64444 4578999999999996 776 77665543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.9e-35 Score=326.32 Aligned_cols=438 Identities=14% Similarity=0.027 Sum_probs=207.4
Q ss_pred cCCcEEEEccCCCCc-CCCC---cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhh---hhcc
Q 007039 36 QKDPIAISLPHRDIQ-ELPE---RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS---LGRL 107 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~-~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~---~~~l 107 (620)
.+++|+|++++|.+. .++. ..++++|++|++++|.. ...+|..++.++++|++|++++|.+... |.. ++++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE-ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc-CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 344555555555442 1222 12455555555555443 2233333224455555555555554432 222 4455
Q ss_pred cCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 108 ~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
++|++|++++|.+.....+..+++|++|++++|.+...+..++++++|++|++++|...+.+|.. +.++++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCC
Confidence 55555555555544422225555555666655555532223555666666666665522233332 55666666666655
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEE
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMML 264 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 264 (620)
|.+....+ .. ++++|++|++++|... .+|..+.. ++|+.|++..+.... .....+..+++|+.|++
T Consensus 257 n~l~~~~~---------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 257 NQFVGPIP---------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-AVPPFFGSCSLLESLAL 325 (768)
T ss_dssp SCCEESCC---------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-CCCGGGGGCTTCCEEEC
T ss_pred CcccCccC---------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-ccchHHhcCCCccEEEC
Confidence 55432111 11 4555555555555533 44444433 555665554332110 01112455556666666
Q ss_pred ecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCcc-ccceEEeccCCCceEeeecccccccccccccc
Q 007039 265 KGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFP-RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE 343 (620)
Q Consensus 265 ~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 343 (620)
+++.-...+ +......+++|++|++.++.....+... +..++ +|++|+++++.-...++. ......+++|+
T Consensus 326 ~~n~l~~~i--p~~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~ 397 (768)
T 3rgz_A 326 SSNNFSGEL--PMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQ 397 (768)
T ss_dssp CSSEEEEEC--CHHHHTTCTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCC
T ss_pred CCCcccCcC--CHHHHhcCCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCcCh---hhhhcccCCcc
Confidence 652211111 1121223455666666554332122111 11333 555565555531111110 00111245566
Q ss_pred hhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc
Q 007039 344 ALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG 423 (620)
Q Consensus 344 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 423 (620)
+|++.++.--..++.. ...+++|+.|++.+| .++...+ ..+.++++|++|++++|.... ..+......+.++.
T Consensus 398 ~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPT----LSNCSELVSLHLSFN-YLSGTIP-SSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLET 470 (768)
T ss_dssp EEECCSSEEEEECCGG----GGGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCE
T ss_pred EEECCCCccccccCHH----HhcCCCCCEEECcCC-cccCccc-HHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCceE
Confidence 6666665422122211 345666666666665 2332222 234566666666666654322 22222333344433
Q ss_pred -ccccccC--CCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEE
Q 007039 424 -FIEINAE--DDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLE 500 (620)
Q Consensus 424 -~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 500 (620)
.+..+.- ..+..+..+++|+.|++++|.-...++. ++..+++|++|++++| .++... +..+..+++|+.|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N-~l~~~~-p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNN-SFSGNI-PAELGDCRSLIWLD 544 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSS-CCEEEC-CGGGGGCTTCCEEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCC-cccCcC-CHHHcCCCCCCEEE
Confidence 2222211 1223456788888888888842223322 3346888999999986 455332 46678889999999
Q ss_pred Ecccccc
Q 007039 501 IRNCRSI 507 (620)
Q Consensus 501 i~~C~~l 507 (620)
+++|+-.
T Consensus 545 Ls~N~l~ 551 (768)
T 3rgz_A 545 LNTNLFN 551 (768)
T ss_dssp CCSSEEE
T ss_pred CCCCccC
Confidence 9887644
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.5e-34 Score=311.32 Aligned_cols=518 Identities=13% Similarity=0.100 Sum_probs=282.0
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCC-cC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPE-RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL- 100 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l- 100 (620)
+.+...+|. .++..+++|++++|.+..+++ .. ++++|++|++++|.. ..+++..|.++++|++|++++|.+..+
T Consensus 21 ~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 21 NLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp TSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred CCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccccC
Confidence 344555554 567889999999999987744 33 899999999999987 455444568999999999999998765
Q ss_pred hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCC
Q 007039 101 PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (620)
Q Consensus 101 p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l 177 (620)
|..++++++|++|++++|.+.. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh
Confidence 6789999999999999999887 578899999999999999888762 334459999999999988 677766668999
Q ss_pred cCCc--EEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCC----CC
Q 007039 178 SQLE--ELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDE----FD 250 (620)
Q Consensus 178 ~~L~--~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~----~~ 250 (620)
++|+ .|++++|.+....+ .......|+.|+++++.. ++..+.. ..+....+......... ..
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~---------~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEP---------GAFDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp TTCCSEEEECTTCCCCEECT---------TTTTTCEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred cccceeEEecCCCccCccCh---------hHhhhccccccccCCchh--HHHHhhhccccchhheechhhccccccccCh
Confidence 9999 88998888763222 222335677777765541 1111111 11111111111100000 00
Q ss_pred cccccc--ccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEee
Q 007039 251 PLLVKS--EASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIV 328 (620)
Q Consensus 251 ~~~~~~--~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~ 328 (620)
..+... .+++.++++++.- ..+ +......+++|++|++.++... .+... +..+++|++|+++++.- ..+.
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l-~~~--~~~~~~~l~~L~~L~l~~n~l~-~lp~~---l~~l~~L~~L~l~~n~l-~~~~ 317 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYF-FNI--SSNTFHCFSGLQELDLTATHLS-ELPSG---LVGLSTLKKLVLSANKF-ENLC 317 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCC-SSC--CTTTTTTCTTCSEEECTTSCCS-CCCSS---CCSCTTCCEEECTTCCC-SBGG
T ss_pred hHhchhhcCceeEEEeecCcc-Ccc--CHHHhccccCCCEEeccCCccC-CCChh---hcccccCCEEECccCCc-CcCc
Confidence 001111 1344555544211 111 1111112345555555544322 22221 23555666666655531 1110
Q ss_pred ecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeec-chhHHHHhcccceEEEEecCCc
Q 007039 329 GSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF-SFSMAKNLLRLQKVKVEDCDDL 407 (620)
Q Consensus 329 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l 407 (620)
......+++|+.|+++++.....++... .+.+++|++|++.++. ++... ....+.++++|++|++++|. +
T Consensus 318 ----~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l 388 (606)
T 3t6q_A 318 ----QISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-P 388 (606)
T ss_dssp ----GGCGGGCTTCSEEECCSCSSCCBCCSST---TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-C
T ss_pred ----hhhhhccCcCCEEECCCCCcccccchhh---hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-C
Confidence 0133445556666665543222222211 3345566666665542 22221 01223455666666665543 2
Q ss_pred ccccccCCCCCCCCcc-ccccccC--C-CCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcce
Q 007039 408 KMIIGPDMEKPPTTQG-FIEINAE--D-DPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKY 483 (620)
Q Consensus 408 ~~~~~~~~~~~~~l~~-~~~~~~~--~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~ 483 (620)
..+.+......+.++. .+..+.- . ....+..+++|++|++++| .+....... +..+++|++|++++| .++.
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~ 463 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQL---FDGLPALQHLNLQGN-HFPK 463 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTT---TTTCTTCCEEECTTC-BCGG
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHH---HhCCCCCCEEECCCC-CCCc
Confidence 2222222222222222 0111100 0 0012345566666666666 333322221 234666666666665 3332
Q ss_pred --ecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccc
Q 007039 484 --LFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDE 561 (620)
Q Consensus 484 --l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~ 561 (620)
++....+..+++|++|++++|. ++.+ .+..... +++|++|+++++. ++.+ .|+.
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~------l~~L~~L~Ls~N~-l~~~---------------~~~~ 519 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCD-LSSI-DQHAFTS------LKMMNHVDLSHNR-LTSS---------------SIEA 519 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSC-CCEE-CTTTTTT------CTTCCEEECCSSC-CCGG---------------GGGG
T ss_pred cccccchhhccCCCccEEECCCCc-cCcc-Chhhhcc------ccCCCEEECCCCc-cCcC---------------ChhH
Confidence 1122345566666666666653 3322 1222232 5666666666652 2221 2345
Q ss_pred cccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCc
Q 007039 562 KVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 562 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l 606 (620)
+..+++| .|++++| .++.+++.. +..+++|++|++++||--
T Consensus 520 l~~l~~L-~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 520 LSHLKGI-YLNLASN-HISIILPSL--LPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GTTCCSC-EEECCSS-CCCCCCGGG--HHHHHTSSEEECTTCCEE
T ss_pred hCccccc-EEECcCC-cccccCHhh--cccCCCCCEEeCCCCCcc
Confidence 5666777 7777777 455554443 235677777777776643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7e-34 Score=311.05 Aligned_cols=515 Identities=16% Similarity=0.132 Sum_probs=333.2
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
++++..+..+..+|... -+.+++|++++|.+ ..+++..|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCcc--CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 46777888888887654 24799999999998 566555579999999999999999875 788999999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. +..|+++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 167 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY--- 167 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE---
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc---
Confidence 9886 67899999999999999999987 5679999999999999998 666532226679999999999998762
Q ss_pred cCCCCcchhhhcCCCCCC--EEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCcccccccc--ccEEEEeccccc
Q 007039 196 EGGSNASLVELERLTELT--TLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEA--SRLMMLKGIKKV 270 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~ 270 (620)
.....++++++|+ .|++++|....+++..+. ..|+.+++..+... ...+..... +..+.+....+.
T Consensus 168 -----~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 168 -----LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL----LVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp -----ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH----HHHHHHTTTCEEEEEECCCCTTS
T ss_pred -----cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH----HHHhhhccccchhheechhhccc
Confidence 2346788889999 889999988877776655 77888877433200 000122222 223333332211
Q ss_pred ccccchhHHHHHh--ccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 271 SILQENDGTKMLL--QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 271 ~~i~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
............+ .+++.|++.++......... +..+++|++|+++++. +..++. ....+++|++|+++
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~-l~~lp~-----~l~~l~~L~~L~l~ 309 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT---FHCFSGLQELDLTATH-LSELPS-----GLVGLSTLKKLVLS 309 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT---TTTCTTCSEEECTTSC-CSCCCS-----SCCSCTTCCEEECT
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHH---hccccCCCEEeccCCc-cCCCCh-----hhcccccCCEEECc
Confidence 1111111111111 26788888776443222222 4578999999999884 333322 45678999999999
Q ss_pred cccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccccc--ccCCCCCCCCcc-cc
Q 007039 349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII--GPDMEKPPTTQG-FI 425 (620)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~l~~-~~ 425 (620)
++. +..+.... ...+++|++|++.+|.....++. ..+.++++|++|+++++.. .... .......+.++. .+
T Consensus 310 ~n~-l~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 310 ANK-FENLCQIS---ASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp TCC-CSBGGGGC---GGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEEC
T ss_pred cCC-cCcCchhh---hhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEEC
Confidence 875 44443222 56789999999999765444433 3457899999999998654 3332 223334444444 12
Q ss_pred cccc--CCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcc
Q 007039 426 EINA--EDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503 (620)
Q Consensus 426 ~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 503 (620)
..+. ......+..+++|++|+++++ .+...... ..+..+++|++|++++| .++.. ++..+..+++|++|++++
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQ--SPFQNLHLLKVLNLSHS-LLDIS-SEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTTC--CTTTTCTTCCEEECTTC-CCBTT-CTTTTTTCTTCCEEECTT
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCC-cCCCcccc--hhhhCcccCCEEECCCC-ccCCc-CHHHHhCCCCCCEEECCC
Confidence 2221 111223445666777777666 23222111 11235667777777765 34443 234456667777777777
Q ss_pred ccccccc-ccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhh
Q 007039 504 CRSIEGV-VNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKI 582 (620)
Q Consensus 504 C~~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l 582 (620)
|+--... ..+.... .+++|+.|+++++. ++.+ .|..+..+++|++|++++| .++.+
T Consensus 459 n~l~~~~~~~~~~~~------~l~~L~~L~Ls~n~-l~~~---------------~~~~~~~l~~L~~L~Ls~N-~l~~~ 515 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQ------TLGRLEILVLSFCD-LSSI---------------DQHAFTSLKMMNHVDLSHN-RLTSS 515 (606)
T ss_dssp CBCGGGEECSSCGGG------GCTTCCEEECTTSC-CCEE---------------CTTTTTTCTTCCEEECCSS-CCCGG
T ss_pred CCCCccccccchhhc------cCCCccEEECCCCc-cCcc---------------ChhhhccccCCCEEECCCC-ccCcC
Confidence 6522211 1111222 25667777776662 2222 1345677889999999988 56665
Q ss_pred ccccccCCcccCccEEEeccCcCcccccchhhhhh
Q 007039 583 WHHQLASKSFSKLKKLKISGCNNLLNIFPPLVRLL 617 (620)
Q Consensus 583 ~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~~~ 617 (620)
.... +.++++| +|++++| ++..+.|..+..+
T Consensus 516 ~~~~--l~~l~~L-~L~L~~N-~l~~~~~~~~~~l 546 (606)
T 3t6q_A 516 SIEA--LSHLKGI-YLNLASN-HISIILPSLLPIL 546 (606)
T ss_dssp GGGG--GTTCCSC-EEECCSS-CCCCCCGGGHHHH
T ss_pred ChhH--hCccccc-EEECcCC-cccccCHhhcccC
Confidence 5444 3477888 8888888 4556566656554
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-33 Score=308.95 Aligned_cols=487 Identities=16% Similarity=0.106 Sum_probs=298.3
Q ss_pred CccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC
Q 007039 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (620)
Q Consensus 23 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 100 (620)
.+.+...+|. ++++++++|++++|.+..++.. .++++|++|++++|.. ..+++..+.++++|++|++++|.+..+
T Consensus 12 s~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCcc
Confidence 3444555554 5678999999999999888763 3899999999999988 556555679999999999999999999
Q ss_pred hh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHh-
Q 007039 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS- 175 (620)
Q Consensus 101 p~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~- 175 (620)
|. .|+++++|++|++++|.+.. + ..|+++++|++|++++|.+..+ |..++++++|++|++++|. +..++...+.
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc
Confidence 86 69999999999999999887 4 7899999999999999988855 5568899999999999998 6777665454
Q ss_pred -CCcCCcEEEcCCCccccccccCCCCcchhhhc------------------------CCCCCCEEEeecCCCCCCCCccc
Q 007039 176 -KLSQLEELYMGNGFSGWEKVEGGSNASLVELE------------------------RLTELTTLEIEVPDAEILPPDFV 230 (620)
Q Consensus 176 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~l~~~~~~~~~~~~~ 230 (620)
.+++|++|++++|.+....+. .+..+. ..++|+.|+++++.....+...+
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPG-----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTT-----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred cccccccEEECCCCcccccChh-----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 568999999999877633221 111111 22567777777776555443322
Q ss_pred c----cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhh-----hc
Q 007039 231 S----VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS-----VV 301 (620)
Q Consensus 231 ~----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~ 301 (620)
. ++|+.|++..+..... ....+..+++|+.|+++++.- ..+ .......+++|+.|++.++..... +.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNI-QHL--FSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSCCB-SEE--CTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred hccCcCCCCEEECCCCCcCcc-CcccccCcccccEeeCCCCcc-Ccc--ChhhhcCCCCccEEeccchhhhccccccccc
Confidence 2 3488887755432211 111256677788888877321 111 111112356777777764321110 00
Q ss_pred --ccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcccccc-CchhhhccCCCCCCcCCCCcEEEeecC
Q 007039 302 --HELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT-NLETICYSQLREDQSFSNLRIINVDSC 378 (620)
Q Consensus 302 --~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~c 378 (620)
... .+..+++|++|+++++. +..+. ......+++|++|+++++. .+..++..... ....++|+.|++.+|
T Consensus 319 ~i~~~-~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~-~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 319 KIDDF-SFQWLKCLEHLNMEDND-IPGIK----SNMFTGLINLKYLSLSNSFTSLRTLTNETFV-SLAHSPLHILNLTKN 391 (680)
T ss_dssp EECTT-TTTTCTTCCEEECCSCC-BCCCC----TTTTTTCTTCCEEECTTCBSCCCEECTTTTG-GGTTSCCCEEECTTS
T ss_pred ccChh-hcccCCCCCEEECCCCc-cCCCC----hhHhccccCCcEEECCCCchhhhhcchhhhc-ccccCcCceEECCCC
Confidence 001 14467777777777764 22111 0134556777777776653 12222111110 111245666666664
Q ss_pred CCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc-cccccc--CCCCccccccCccceEecCCcccccc
Q 007039 379 RKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG-FIEINA--EDDPVHQVTFPRLEELELVSLTNIKK 455 (620)
Q Consensus 379 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~-~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~ 455 (620)
.++.+++ ..+..+++|++|+++++..-..++.......+.++. .+..+. ......+..+++|+.|++.++ .+..
T Consensus 392 -~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~ 468 (680)
T 1ziw_A 392 -KISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKN 468 (680)
T ss_dssp -CCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBC
T ss_pred -CCCeECh-hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccc
Confidence 3344332 234566666666666654333333222223333332 111111 111233456788888888887 3332
Q ss_pred ccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccC-Cccceeeccccceeccc
Q 007039 456 LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLG-GRDEFKVFPKLHYLSLH 534 (620)
Q Consensus 456 l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~ 534 (620)
+. .....+..+++|++|+++++ +++.+ ++..+..+++|++|+++++. ++.+......+ .......+++|+.|+++
T Consensus 469 ~~-~~p~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 469 VD-SSPSPFQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp TT-CSSCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred cc-cCCcccccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECC
Confidence 21 11123346889999999985 67777 34567888999999999864 44432111000 00012236788888887
Q ss_pred cC
Q 007039 535 WL 536 (620)
Q Consensus 535 ~~ 536 (620)
++
T Consensus 545 ~N 546 (680)
T 1ziw_A 545 SN 546 (680)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-33 Score=316.17 Aligned_cols=193 Identities=19% Similarity=0.198 Sum_probs=90.7
Q ss_pred cCCcEEEEccCCCCcCCCC-----cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 36 QKDPIAISLPHRDIQELPE-----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~-----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
.+++++|++++|.+..... ..++++|++|++++|.+ ....+. ..+++|++|++++|.+...++.++++++|
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 225 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE-ESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc-cccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCC
Confidence 4556666666666643322 22455555555555544 222221 34555555555555554422225555555
Q ss_pred cEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-----------------------CCChhccCC-CCCCEEeCCCCc
Q 007039 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-----------------------QLPVEIGQL-TRLQLLDLSNCW 164 (620)
Q Consensus 111 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-----------------------~lp~~i~~l-~~L~~L~l~~~~ 164 (620)
++|++++|.+.. +..++++++|++|++++|.+. .+|..+..+ ++|++|++++|.
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 555555555443 445555555555555555444 444444332 455555555544
Q ss_pred cccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc-c-CceEEEEE
Q 007039 165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-V-ELQRYKIR 240 (620)
Q Consensus 165 ~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~-~L~~L~l~ 240 (620)
..+.+|.. ++++++|++|++++|.+.+.. ....++++++|++|++++|... .+|..+.. . +|+.|++.
T Consensus 306 l~~~~p~~-~~~l~~L~~L~L~~n~l~~~i-------p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 306 FYGAVPPF-FGSCSLLESLALSSNNFSGEL-------PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp EEECCCGG-GGGCTTCCEEECCSSEEEEEC-------CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CCCccchH-HhcCCCccEEECCCCcccCcC-------CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 22233332 445555555555544433111 1122455555555555555433 33443333 2 45555553
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=296.86 Aligned_cols=496 Identities=17% Similarity=0.143 Sum_probs=343.9
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 99 (620)
+.+.+..++|. .+++++++|++++|.+..++. ..++++|++|++++|.. ..++...|.++++|++|++++|.+..
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCc
Confidence 33445555564 567889999999999987764 33899999999999987 66766667899999999999999987
Q ss_pred Ch-hhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHH
Q 007039 100 LP-SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (620)
Q Consensus 100 lp-~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l 174 (620)
++ ..|+++++|++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence 65 689999999999999999887 4 469999999999999998885 78999999999999999998 677766558
Q ss_pred hCCcCC----cEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC--CCCCcccc-cCceEEEEEeCCCCCC
Q 007039 175 SKLSQL----EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE--ILPPDFVS-VELQRYKIRIGDGPED 247 (620)
Q Consensus 175 ~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~-~~L~~L~l~~~~~~~~ 247 (620)
+.+++| +.|++++|.+.... ...+... +|+.|+++++... .++..+.. +.++...+........
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~--------~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQ--------PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEEC--------TTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred cchhccchhhhhcccCCCCceecC--------HHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 888888 89999998876322 2333333 7899999876422 11111112 4444444432211110
Q ss_pred CC-----Cccccccc--cccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEecc
Q 007039 248 EF-----DPLLVKSE--ASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD 320 (620)
Q Consensus 248 ~~-----~~~~~~~~--~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 320 (620)
.. ...+..+. .++.+.+.++....... +. ....+++|+.|++.++... .+... +..+ +|++|++++
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~-~~-~~~~l~~L~~L~l~~~~l~-~l~~~---~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI-ID-LFNCLTNVSSFSLVSVTIE-RVKDF---SYNF-GWQHLELVN 313 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS-TT-TTGGGTTCSEEEEESCEEC-SCCBC---CSCC-CCSEEEEES
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhc-hh-hhcCcCcccEEEecCccch-hhhhh---hccC-CccEEeecc
Confidence 00 00112222 24455555421111111 11 1123578888888776533 33232 2355 999999998
Q ss_pred CCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeec-chhHHHHhcccceE
Q 007039 321 CSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF-SFSMAKNLLRLQKV 399 (620)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L 399 (620)
+.- ..+ ....+++|+.|++.++......+ ...+++|++|++.+|. ++... ....+.++++|++|
T Consensus 314 n~~-~~l-------~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 314 CKF-GQF-------PTLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp CBC-SSC-------CBCBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEE
T ss_pred Ccc-ccc-------CcccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCc-cCccccccccccccCccCEE
Confidence 853 222 33578999999999876332221 3578999999999874 44432 12356889999999
Q ss_pred EEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCC
Q 007039 400 KVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCH 479 (620)
Q Consensus 400 ~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~ 479 (620)
++++|. +..++ ..+..+++|++|++.++ .+...... ..+..+++|++|++++|
T Consensus 379 ~l~~n~-l~~~~----------------------~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~~l~~L~~L~l~~n- 431 (570)
T 2z63_A 379 DLSFNG-VITMS----------------------SNFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNLIYLDISHT- 431 (570)
T ss_dssp ECCSCS-EEEEE----------------------EEEETCTTCCEEECTTS-EEESCTTS--CTTTTCTTCCEEECTTS-
T ss_pred ECCCCc-ccccc----------------------ccccccCCCCEEEccCC-ccccccch--hhhhcCCCCCEEeCcCC-
Confidence 999875 33333 11456899999999998 44443221 12347899999999997
Q ss_pred CcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccc
Q 007039 480 RLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLF 559 (620)
Q Consensus 480 ~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~ 559 (620)
.++.. .+..+..+++|++|++.+|.-... ..+..... +++|+.|+++++. ++.+ .|
T Consensus 432 ~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~p~~~~~------l~~L~~L~l~~n~-l~~~---------------~~ 487 (570)
T 2z63_A 432 HTRVA-FNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTE------LRNLTFLDLSQCQ-LEQL---------------SP 487 (570)
T ss_dssp CCEEC-CTTTTTTCTTCCEEECTTCEEGGG-EECSCCTT------CTTCCEEECTTSC-CCEE---------------CT
T ss_pred ccccc-chhhhhcCCcCcEEECcCCcCccc-cchhhhhc------ccCCCEEECCCCc-cccC---------------Ch
Confidence 55555 346678899999999999874321 12344444 7899999999883 3332 14
Q ss_pred cccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCc
Q 007039 560 DEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 560 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l 606 (620)
..+..+++|++|++++| .++.++... +.++++|++|++++++--
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVPDGI--FDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSCBC
T ss_pred hhhhcccCCCEEeCCCC-cCCCCCHHH--hhcccCCcEEEecCCccc
Confidence 45678899999999999 688876654 457899999999986643
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-31 Score=295.77 Aligned_cols=531 Identities=17% Similarity=0.087 Sum_probs=332.4
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
+.++.+++.+..+|.... +++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 568888888888886543 7999999999998 667776679999999999999999876 678999999999999999
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. + ..|+++++|++|++++|.+..+| ..++++++|++|++++|. +...++..++++++|++|++++|.+...
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL-- 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB--
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc--
Confidence 9988 5 46999999999999999999887 569999999999999998 5555555588999999999999987622
Q ss_pred cCCCCcchhhh--cCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCC--CCCccccccccccEEEEecccc
Q 007039 196 EGGSNASLVEL--ERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPED--EFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 196 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
....+ .++++|++|++++|....++...+. .+|+.+.+........ ...+......+++.|+++++.-
T Consensus 161 ------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 161 ------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp ------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred ------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 22333 3568999999999987777665443 6777776632221000 0000000235788888877321
Q ss_pred cccccchhHHHHHh--ccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 270 VSILQENDGTKMLL--QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 270 ~~~i~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
..+. +.++. .+ ++|+.|++.++......... ++.+++|++|+++++.- ..+. ......+++|+.|++
T Consensus 235 -~~~~-~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l-~~~~----~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 235 -STTS-NTTFL-GLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNNI-QHLF----SHSLHGLFNVRYLNL 303 (680)
T ss_dssp -CEEC-TTTTG-GGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSCCB-SEEC----TTTTTTCTTCCEEEC
T ss_pred -cccC-hhHhh-ccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeCCCCcc-CccC----hhhhcCCCCccEEec
Confidence 1111 11111 12 34888888776543222222 44788888888888742 2221 114566788888888
Q ss_pred ccccCchh-----hhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCC-cccccccCCC--CCC
Q 007039 348 MFLTNLET-----ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD-LKMIIGPDME--KPP 419 (620)
Q Consensus 348 ~~~~~l~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~--~~~ 419 (620)
.++..-.. ++.......+.+++|++|++.++ .++..++ ..+.++++|++|++++|.. +..+...... ..+
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 76432111 11100002456788888888875 4454433 2456788888888887642 2222211100 001
Q ss_pred CCcc-cccccc--CCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcc
Q 007039 420 TTQG-FIEINA--EDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQL 496 (620)
Q Consensus 420 ~l~~-~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 496 (620)
.++. ....+. ......+..+++|+.|+++++.-...++... +..+++|++|++++| .++.+ ....+..+++|
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~~L 456 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE---WRGLENIFEIYLSYN-KYLQL-TRNSFALVPSL 456 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG---GTTCTTCCEEECCSC-SEEEC-CTTTTTTCTTC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc---ccCcccccEEecCCC-Cccee-ChhhhhcCccc
Confidence 2221 111111 0112234567778888888773222232222 235778888888886 45555 34556677888
Q ss_pred cEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCC--------cccccCCCCcccccc--------
Q 007039 497 QHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASP--------EDVIHTEMQPQSLFD-------- 560 (620)
Q Consensus 497 ~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~--------~~~~~~~~~l~~l~~-------- 560 (620)
+.|++.++.--..-..+..... +++|+.|+++++. ++.++.. .......+.++.++.
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~------l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQP------LRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTT------CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred ccchhccccccccccCCccccc------CCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 8888887652111111333333 6788888887753 3332211 000012233343322
Q ss_pred -ccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCcccccch
Q 007039 561 -EKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFPP 612 (620)
Q Consensus 561 -~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~ 612 (620)
.+..+++|++|+++++ .++.++... +.++++|++|+++++ +++. +|.
T Consensus 530 ~~~~~l~~L~~L~L~~N-~l~~i~~~~--~~~l~~L~~L~Ls~N-~l~~-l~~ 577 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESN-GFDEIPVEV--FKDLFELKIIDLGLN-NLNT-LPA 577 (680)
T ss_dssp CTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCC-CCT
T ss_pred hhhcCCCCCCEEECCCC-CCCCCCHHH--cccccCcceeECCCC-CCCc-CCH
Confidence 1466778888888887 577666543 457788888888554 5666 443
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=291.71 Aligned_cols=492 Identities=16% Similarity=0.156 Sum_probs=327.8
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~ 118 (620)
+.++-++..+..+|... .+++++|++++|.. ..++...|.++++|++|++++|.+..++ ..|+++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 45666666777777643 35799999999998 6666555789999999999999998874 67899999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCccccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
.+.. +..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCcccee
Confidence 9887 4789999999999999999998876 59999999999999998 554 5665 89999999999999987622
Q ss_pred cccCCCCcchhhhcCCCCC----CEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc-
Q 007039 194 KVEGGSNASLVELERLTEL----TTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI- 267 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 267 (620)
....++++++| +.++++.+....++...+. .+|+.+.+.............+..+..++...+...
T Consensus 165 --------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 165 --------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp --------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred --------cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecccc
Confidence 22345555555 7999999988877776555 678888886542111111111233444444433321
Q ss_pred -cccccccch-hHHHHHhc--cccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccc
Q 007039 268 -KKVSILQEN-DGTKMLLQ--RTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE 343 (620)
Q Consensus 268 -~~~~~i~~~-~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 343 (620)
.....+... .+....++ .++.+.+..+....... ...+..+++|++|+++++. +..++ .....+ +|+
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~-l~~l~-----~~~~~~-~L~ 307 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI--IDLFNCLTNVSSFSLVSVT-IERVK-----DFSYNF-GWQ 307 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS--TTTTGGGTTCSEEEEESCE-ECSCC-----BCCSCC-CCS
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhc--hhhhcCcCcccEEEecCcc-chhhh-----hhhccC-Ccc
Confidence 111111100 00000111 22333333221111110 1113467888888888774 22221 123344 788
Q ss_pred hhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc
Q 007039 344 ALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG 423 (620)
Q Consensus 344 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 423 (620)
.|++.++. +..++ ...+++|++|++.++......+. ..+++|++|++++|.. .....
T Consensus 308 ~L~l~~n~-~~~l~------~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l-~~~~~----------- 364 (570)
T 2z63_A 308 HLELVNCK-FGQFP------TLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGL-SFKGC----------- 364 (570)
T ss_dssp EEEEESCB-CSSCC------BCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCC-BEEEE-----------
T ss_pred EEeeccCc-ccccC------cccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCcc-Ccccc-----------
Confidence 88888765 33322 34678888888888754333322 4678888888887642 22210
Q ss_pred ccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcc
Q 007039 424 FIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503 (620)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 503 (620)
.......+++|+.|++++| .+..++.. +..+++|++|++++| .++...+...+..+++|++|++++
T Consensus 365 --------~~~~~~~~~~L~~L~l~~n-~l~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 365 --------CSQSDFGTTSLKYLDLSFN-GVITMSSN----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp --------EEHHHHTCSCCCEEECCSC-SEEEEEEE----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTT
T ss_pred --------ccccccccCccCEEECCCC-cccccccc----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcC
Confidence 0022456789999999998 45555433 346899999999996 566554445678899999999999
Q ss_pred cccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhc
Q 007039 504 CRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIW 583 (620)
Q Consensus 504 C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~ 583 (620)
|...... +..... +++|+.|++.++.- +. ..+|..+..+++|++|++++| .++.+.
T Consensus 431 n~l~~~~--~~~~~~------l~~L~~L~l~~n~l-~~--------------~~~p~~~~~l~~L~~L~l~~n-~l~~~~ 486 (570)
T 2z63_A 431 THTRVAF--NGIFNG------LSSLEVLKMAGNSF-QE--------------NFLPDIFTELRNLTFLDLSQC-QLEQLS 486 (570)
T ss_dssp SCCEECC--TTTTTT------CTTCCEEECTTCEE-GG--------------GEECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred Ccccccc--hhhhhc------CCcCcEEECcCCcC-cc--------------ccchhhhhcccCCCEEECCCC-ccccCC
Confidence 8643221 333333 78899999988742 10 135566788999999999999 577664
Q ss_pred cccccCCcccCccEEEeccCcCcccccchhhhhh
Q 007039 584 HHQLASKSFSKLKKLKISGCNNLLNIFPPLVRLL 617 (620)
Q Consensus 584 ~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~~~ 617 (620)
... +.++++|++|++++| +++.+.|..+..+
T Consensus 487 ~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 517 (570)
T 2z63_A 487 PTA--FNSLSSLQVLNMASN-QLKSVPDGIFDRL 517 (570)
T ss_dssp TTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred hhh--hhcccCCCEEeCCCC-cCCCCCHHHhhcc
Confidence 443 457899999999998 6777555555543
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-31 Score=286.39 Aligned_cols=484 Identities=13% Similarity=0.111 Sum_probs=214.3
Q ss_pred EccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCC
Q 007039 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELA 121 (620)
Q Consensus 43 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~ 121 (620)
+.+++.+..+|... .++|++|++++|.+ ..++...+.++++|++|++++|.+..++ ..++++++|++|++++|.+.
T Consensus 11 ~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFTSIPSGL-TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCSSCCSCC-CTTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccccccccC-CCCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 34444444444432 24555555555554 2332222355555555555555554433 34555555555555555554
Q ss_pred C-h-hhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccC
Q 007039 122 D-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG 197 (620)
Q Consensus 122 ~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (620)
. + ..|+++++|++|++++|.++. +|..++++++|++|++++|...+.+|...+.++++|++|++++|.+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----- 162 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN----- 162 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-----
Confidence 4 2 335555555555555555542 234455555555555555544444443335555555555555554431
Q ss_pred CCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCC--CCccccccccccEEEEecccccccc
Q 007039 198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDE--FDPLLVKSEASRLMMLKGIKKVSIL 273 (620)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~i 273 (620)
.....++++++|++|+++++....++..... ++|+.|++..+...... ..+.....++++.|.+.++ .+
T Consensus 163 ---~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n----~l 235 (549)
T 2z81_A 163 ---YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS----VL 235 (549)
T ss_dssp ---ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC----EE
T ss_pred ---cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc----cc
Confidence 1223444555555555555544443333222 45555555443322110 1111234566777777662 22
Q ss_pred cc--hhHHH---HHhccccceecccccChhh--hc-ccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 274 QE--NDGTK---MLLQRTEDLWLETLEGVQS--VV-HELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 274 ~~--~~~~~---~~l~~L~~L~l~~~~~~~~--~~-~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
.. +..+. ..+++++.+++.++..... +. .....+..+++|+.|.+.++.--..............+++|+.|
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 21 11111 1123455555544432110 00 00111234555566655554310000000000001112334444
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecc-hhHHHHhcccceEEEEecCCcccccccCCCCCCCCccc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF 424 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~ 424 (620)
+++++. +..++... .+.+++|+.|++.++.--...+. ...+..+++|++|++++|. ++.+...
T Consensus 316 ~l~~n~-l~~ip~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------- 379 (549)
T 2z81_A 316 TVENSK-VFLVPCSF---SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT----------- 379 (549)
T ss_dssp EEESSC-CCCCCHHH---HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH-----------
T ss_pred EeccCc-cccCCHHH---HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccc-----------
Confidence 443322 22221110 01234444444444321111100 0011233444444444432 1111100
Q ss_pred cccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 425 IEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 425 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
......+++|++|++++| +++.++.. +..+++|++|++++| .++.++ .. ..++|++|++++|
T Consensus 380 --------~~~~~~l~~L~~L~Ls~N-~l~~lp~~----~~~~~~L~~L~Ls~N-~l~~l~-~~---~~~~L~~L~Ls~N 441 (549)
T 2z81_A 380 --------GEILLTLKNLTSLDISRN-TFHPMPDS----CQWPEKMRFLNLSST-GIRVVK-TC---IPQTLEVLDVSNN 441 (549)
T ss_dssp --------HHHGGGCTTCCEEECTTC-CCCCCCSC----CCCCTTCCEEECTTS-CCSCCC-TT---SCTTCSEEECCSS
T ss_pred --------hhhhhcCCCCCEEECCCC-CCccCChh----hcccccccEEECCCC-Cccccc-ch---hcCCceEEECCCC
Confidence 001234555555555555 44443322 123555555555554 344431 11 1245555555554
Q ss_pred ccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcc
Q 007039 505 RSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWH 584 (620)
Q Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~ 584 (620)
. ++.++ . .+++|++|+++++ .++++|+ ...+++|++|++++| .++.++.
T Consensus 442 ~-l~~~~-----~------~l~~L~~L~Ls~N-----------------~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 442 N-LDSFS-----L------FLPRLQELYISRN-----------------KLKTLPD-ASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp C-CSCCC-----C------CCTTCCEEECCSS-----------------CCSSCCC-GGGCTTCCEEECCSS-CCCCCCT
T ss_pred C-hhhhc-----c------cCChhcEEECCCC-----------------ccCcCCC-cccCccCCEEecCCC-ccCCcCH
Confidence 2 32221 1 2556666666655 3334454 356889999999998 6887766
Q ss_pred ccccCCcccCccEEEeccCcCccc
Q 007039 585 HQLASKSFSKLKKLKISGCNNLLN 608 (620)
Q Consensus 585 ~~~~~~~~~sL~~L~i~~C~~l~~ 608 (620)
.. +.++++|++|++.+|+-.-.
T Consensus 491 ~~--~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 491 GI--FDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp TG--GGGCTTCCEEECCSSCBCCC
T ss_pred HH--HhcCcccCEEEecCCCccCC
Confidence 54 34789999999998875443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2.8e-31 Score=300.17 Aligned_cols=349 Identities=15% Similarity=0.141 Sum_probs=220.5
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCC-cC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE-RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 99 (620)
+...+...+|. .++++++|++++|.+..+.+ .. ++++|++|++++|.. ...+++..|.++++|++|++++|.+..
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 34455666665 68999999999999977643 33 899999999999966 567755667999999999999999987
Q ss_pred C-hhhhhcccCCcEEEccCCCCCC--hhh--hcCCCCCCEEecCCCCCCCC--ChhccCCCCCCEEeCCCCccccccchH
Q 007039 100 L-PSSLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCWWLEVIAPN 172 (620)
Q Consensus 100 l-p~~~~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~ 172 (620)
+ |..|+++++|++|++++|.+.+ +.. ++++++|++|++++|.+..+ +..++++++|++|++++|. +..+...
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~ 166 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEH 166 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHH
Confidence 5 7899999999999999999875 444 89999999999999988865 3579999999999999988 4444433
Q ss_pred HHhCC--cCCcEEEcCCCccccccccCCCCcchhhhcCCC------CCCEEEeecCCCC-CCCCcccc----cCceEEEE
Q 007039 173 VISKL--SQLEELYMGNGFSGWEKVEGGSNASLVELERLT------ELTTLEIEVPDAE-ILPPDFVS----VELQRYKI 239 (620)
Q Consensus 173 ~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~~~----~~L~~L~l 239 (620)
.+..+ ++|+.|++++|.+....+ ..++++. .|+.|++++|... ..+..+.. ..++.+.+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~--------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVS--------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCC--------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred HcccccCCccceEECCCCccccccc--------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 37766 899999999988763221 2222222 4999999988643 23333222 56666665
Q ss_pred EeCCCCCC---CC-----Ccccc--ccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCC
Q 007039 240 RIGDGPED---EF-----DPLLV--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEG 309 (620)
Q Consensus 240 ~~~~~~~~---~~-----~~~~~--~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 309 (620)
........ .. ...+. ..++++.|+++++.- ..+ .......+++|+.|++.++.-....... +.+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~ 312 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSL--NSRVFETLKDLKVLNLAYNKINKIADEA---FYG 312 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEE--CSCCSSSCCCCCEEEEESCCCCEECTTT---TTT
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcc-ccc--ChhhhhcCCCCCEEECCCCcCCCCChHH---hcC
Confidence 41110000 00 00011 124566666666321 111 0111112456666666554432221122 335
Q ss_pred ccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhH
Q 007039 310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSM 389 (620)
Q Consensus 310 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 389 (620)
+++|++|+++++. +..+. ......+++|+.|+++++ .+..++... ...+++|+.|++.++ .++.++
T Consensus 313 l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~i~---- 378 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELY----SSNFYGLPKVAYIDLQKN-HIAIIQDQT---FKFLEKLQTLDLRDN-ALTTIH---- 378 (844)
T ss_dssp CSSCCEEEEESCC-CSCCC----SCSCSSCTTCCEEECCSC-CCCCCCSSC---SCSCCCCCEEEEETC-CSCCCS----
T ss_pred CCCCCEEECCCCC-CCccC----HHHhcCCCCCCEEECCCC-CCCccChhh---hcCCCCCCEEECCCC-CCCccc----
Confidence 6677777776663 11110 113445666666666664 343333221 345666777777664 344332
Q ss_pred HHHhcccceEEEEec
Q 007039 390 AKNLLRLQKVKVEDC 404 (620)
Q Consensus 390 ~~~l~~L~~L~l~~c 404 (620)
.+++|+.|.++++
T Consensus 379 --~~~~L~~L~l~~N 391 (844)
T 3j0a_A 379 --FIPSIPDIFLSGN 391 (844)
T ss_dssp --SCCSCSEEEEESC
T ss_pred --CCCCcchhccCCC
Confidence 2566677766664
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.3e-30 Score=288.15 Aligned_cols=514 Identities=17% Similarity=0.089 Sum_probs=321.1
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCC-CCC-hhhhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~~~~l~~L~~L~L~~ 117 (620)
+..+.+++.+..+|. -.+++++|++++|.+ ..++...|.++++|++|++++|.. ..+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 567778888999988 568999999999998 555444469999999999999954 456 77899999999999999
Q ss_pred CCCCC--hhhhcCCCCCCEEecCCCCCCC-CChh--ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccc
Q 007039 118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 118 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
|.+.. |..|+++++|++|++++|.+.. +|.. ++++++|++|++++|......+...++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99886 6899999999999999998885 5655 89999999999999984333343458999999999999998762
Q ss_pred ccccCCCCcchhhhcCC--CCCCEEEeecCCCCCC-CCcccc-------cCceEEEEEeCCCCCCCC--Ccccccccccc
Q 007039 193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEIL-PPDFVS-------VELQRYKIRIGDGPEDEF--DPLLVKSEASR 260 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~~~~-------~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~ 260 (620)
. ....++.+ ++|+.|+++.|..... +..+.. ..|+.|++..+....... .........+.
T Consensus 163 ~--------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 163 V--------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp C--------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred e--------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 2 22445544 7899999998875432 222221 348888886543211100 00111224566
Q ss_pred EEEEeccccc-----ccccch--hHHH-HHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeeccc
Q 007039 261 LMMLKGIKKV-----SILQEN--DGTK-MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR 332 (620)
Q Consensus 261 ~L~l~~~~~~-----~~i~~~--~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 332 (620)
.+.+...... ..+... .... ...++++.|++.++......... +..+++|+.|+++++. +..+..
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-i~~~~~--- 307 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---FETLKDLKVLNLAYNK-INKIAD--- 307 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC---SSSCCCCCEEEEESCC-CCEECT---
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh---hhcCCCCCEEECCCCc-CCCCCh---
Confidence 6666521100 111100 0000 01357888888776543322222 4578899999998885 332211
Q ss_pred ccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccc
Q 007039 333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (620)
Q Consensus 333 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 412 (620)
.....+++|+.|+++++. +..+.... ...+++|+.|++.++ .++.+++. .+.++++|++|+++++. +..+..
T Consensus 308 -~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~ 379 (844)
T 3j0a_A 308 -EAFYGLDNLQVLNLSYNL-LGELYSSN---FYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTIHF 379 (844)
T ss_dssp -TTTTTCSSCCEEEEESCC-CSCCCSCS---CSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCCSS
T ss_pred -HHhcCCCCCCEEECCCCC-CCccCHHH---hcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcccC
Confidence 145677889999998864 44432222 567889999999886 56665442 35678999999998864 333321
Q ss_pred cCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcc
Q 007039 413 PDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNS 492 (620)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 492 (620)
.+.+.............+ ....+++.|+++++ ++..+... ..+..+++|++|+++++ +++...+...+..
T Consensus 380 -----~~~L~~L~l~~N~l~~l~-~~~~~l~~L~ls~N-~l~~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 380 -----IPSIPDIFLSGNKLVTLP-KINLTANLIHLSEN-RLENLDIL--YFLLRVPHLQILILNQN-RFSSCSGDQTPSE 449 (844)
T ss_dssp -----CCSCSEEEEESCCCCCCC-CCCTTCCEEECCSC-CCCSSTTH--HHHTTCTTCCEEEEESC-CCCCCCSSSSSCS
T ss_pred -----CCCcchhccCCCCccccc-ccccccceeecccC-ccccCchh--hhhhcCCccceeeCCCC-ccccccccccccc
Confidence 222222111111111111 11334555555554 33332111 11224677777777774 5555433334455
Q ss_pred cCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEE
Q 007039 493 LGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLH 572 (620)
Q Consensus 493 l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~ 572 (620)
+++|+.|+++++. ++.....+.. ......+++|+.|+|+++ +++.++ |..+..+++|++|+
T Consensus 450 ~~~L~~L~Ls~N~-l~~~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~---------------~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 450 NPSLEQLFLGENM-LQLAWETELC--WDVFEGLSHLQVLYLNHN-YLNSLP---------------PGVFSHLTALRGLS 510 (844)
T ss_dssp CTTCCBCEEESCC-CSSSCCSCCC--SSCSSCBCCEECCCCCHH-HHTTCC---------------TTSSSSCCSCSEEE
T ss_pred CCccccccCCCCc-cccccccccc--hhhhcCcccccEEECCCC-cccccC---------------hhHccchhhhheeE
Confidence 6777777777743 3221110000 011223566777777665 333322 22356889999999
Q ss_pred eccccchhhhccccccCCcccCccEEEeccCcCcccccchhhh
Q 007039 573 ISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFPPLVR 615 (620)
Q Consensus 573 i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~ 615 (620)
++++ .|+.++...++ ++|+.|+++++ ++..+.|..+.
T Consensus 511 Ls~N-~l~~l~~~~~~----~~L~~L~Ls~N-~l~~~~~~~~~ 547 (844)
T 3j0a_A 511 LNSN-RLTVLSHNDLP----ANLEILDISRN-QLLAPNPDVFV 547 (844)
T ss_dssp EESC-CCSSCCCCCCC----SCCCEEEEEEE-CCCCCCSCCCS
T ss_pred CCCC-CCCccChhhhh----ccccEEECCCC-cCCCCChhHhC
Confidence 9999 78888777654 89999999886 45554665543
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=277.20 Aligned_cols=467 Identities=13% Similarity=0.073 Sum_probs=232.3
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
++++++++.+..+|.... ++|++|++++|.+ ..++...+..+++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 567777777777765444 6777777777766 445544456777777777777777665 556777777777777777
Q ss_pred CCCC-hhhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHHhCCcCC--cEEEcCCCccccc
Q 007039 119 ELAD-IAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFSGWE 193 (620)
Q Consensus 119 ~~~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L--~~L~l~~~~~~~~ 193 (620)
.+.. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +... .+..+++| ++|++++|.+..
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTTT-
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccccc-
Confidence 7666 433 67777777777776664 45667777777777777765 3331 25556666 777776665510
Q ss_pred cccCCCCcchhhhcCCCC-CCEEEeecCCCC-CCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccc
Q 007039 194 KVEGGSNASLVELERLTE-LTTLEIEVPDAE-ILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (620)
....+..++.++. .-.++++.+... .++.. .+..+++|+.++++++....
T Consensus 153 -----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------------~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 153 -----EKEDPEGLQDFNTESLHIVFPTNKEFHFILDV-----------------------SVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp -----SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC-----------------------CCTTCSEEEECCEEECCSTT
T ss_pred -----cccccccccccccceEEEEeccCcchhhhhhh-----------------------hhhcccceeecccccccccc
Confidence 0112233333332 112222222211 11111 12334444444444421100
Q ss_pred cccchhHHH---HHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 272 ILQENDGTK---MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 272 ~i~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
......+.. ..+++|+.|++.++.........+......++|++|+++++.-...++..........++.|+.+++.
T Consensus 205 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~ 284 (520)
T 2z7x_B 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284 (520)
T ss_dssp TTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEE
T ss_pred ccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccc
Confidence 000000000 01223333333322211110000000001235555555554311011100000001334444444444
Q ss_pred cccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccc
Q 007039 349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEIN 428 (620)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~ 428 (620)
++.- .++...+...-.-.+|+.|++.++. +...+. ...+++|++|++++|..-...+
T Consensus 285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~----------------- 341 (520)
T 2z7x_B 285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNNLLTDTVF----------------- 341 (520)
T ss_dssp ECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTT-----------------
T ss_pred ccce--ecchhhhhcccccCceeEEEcCCCc-cccccc---hhhCCcccEEEeECCccChhhh-----------------
Confidence 3321 1110000000001345566665543 222211 1345566666666543222111
Q ss_pred cCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcce-ecchhhhcccCcccEEEEcccccc
Q 007039 429 AEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKY-LFSYSMVNSLGQLQHLEIRNCRSI 507 (620)
Q Consensus 429 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l 507 (620)
..+..+++|++|++++| ++..++.. ...+..+++|++|+++++ .++. + +...+..+++|++|++++|.--
T Consensus 342 -----~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~~~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 342 -----ENCGHLTELETLILQMN-QLKELSKI-AEMTTQMKSLQQLDISQN-SVSYDE-KKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp -----TTCCCCSSCCEEECCSS-CCCBHHHH-HHHHTTCTTCCEEECCSS-CCBCCG-GGCSCCCCTTCCEEECCSSCCC
T ss_pred -----hhhccCCCCCEEEccCC-ccCccccc-hHHHhhCCCCCEEECCCC-cCCccc-ccchhccCccCCEEECcCCCCC
Confidence 22345667777777776 34432110 011235677777777774 4554 4 3334556677777777776522
Q ss_pred cccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccc
Q 007039 508 EGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQL 587 (620)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 587 (620)
..+ +... .++|+.|+++++ .++++|..+..+++|++|++++| .++.+|...
T Consensus 413 ~~~--~~~l--------~~~L~~L~Ls~N-----------------~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~- 463 (520)
T 2z7x_B 413 DTI--FRCL--------PPRIKVLDLHSN-----------------KIKSIPKQVVKLEALQELNVASN-QLKSVPDGI- 463 (520)
T ss_dssp GGG--GGSC--------CTTCCEEECCSS-----------------CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT-
T ss_pred cch--hhhh--------cccCCEEECCCC-----------------cccccchhhhcCCCCCEEECCCC-cCCccCHHH-
Confidence 221 1110 146777777665 33456677778999999999999 688887663
Q ss_pred cCCcccCccEEEeccCcCc
Q 007039 588 ASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 588 ~~~~~~sL~~L~i~~C~~l 606 (620)
+.++++|++|++.++|--
T Consensus 464 -~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 464 -FDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -TTTCTTCCEEECCSSCBC
T ss_pred -hccCCcccEEECcCCCCc
Confidence 457899999999988744
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.1e-29 Score=268.59 Aligned_cols=482 Identities=17% Similarity=0.167 Sum_probs=315.8
Q ss_pred CCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCE
Q 007039 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (620)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 134 (620)
|+...+.+.+++.. ..+|..+ .++|++|++++|.+..+ |..++++++|++|++++|.+.. +..|+++++|++
T Consensus 4 C~~~~~c~~~~~~l--~~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 4 CDASGVCDGRSRSF--TSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCceEECCCCcc--ccccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 44555677777776 7788754 48999999999999876 5789999999999999999887 478999999999
Q ss_pred EecCCCCCCCCChh-ccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCC
Q 007039 135 LSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE 211 (620)
Q Consensus 135 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 211 (620)
|++++|.+..+|.. ++++++|++|++++|. +.. .|.. ++++++|++|++++|..... .....++++++
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~-------~~~~~~~~l~~ 149 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFSE-------IRRIDFAGLTS 149 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCCE-------ECTTTTTTCCE
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCccccc-------cCHhhhhcccc
Confidence 99999999988765 9999999999999998 554 3443 88999999999998874321 12246788999
Q ss_pred CCEEEeecCCCCC-CCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccce
Q 007039 212 LTTLEIEVPDAEI-LPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDL 289 (620)
Q Consensus 212 L~~L~l~~~~~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L 289 (620)
|++|++++|.... .+..+.. ++|+.|.+........ .......+++|+.|+++++.-......+.++...+++|+.|
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999998765 3444444 7788888865432111 00012346778888887732211000011111224567777
Q ss_pred ecccccChhhhcccCC-cCCCccccceEEeccCCCceEeeec--ccccccccccccchhccccccCchhhhccCCCC-CC
Q 007039 290 WLETLEGVQSVVHELD-DGEGFPRLKRLLVTDCSEILHIVGS--VRRVRCEVFPLLEALSLMFLTNLETICYSQLRE-DQ 365 (620)
Q Consensus 290 ~l~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~ 365 (620)
++.++.........+. ....+++|+.+++++|.. ..+.+- ........+++|+.|.+.++.--.......+.. ..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 7765543222111110 123567778888877741 111000 000123456677777776653111110000000 12
Q ss_pred cCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE
Q 007039 366 SFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL 445 (620)
Q Consensus 366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 445 (620)
.+++|++|++.++ .++.+|. ..+.++++|++|+++++.....++.. ......+++|+.|
T Consensus 308 ~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------~~~~~~l~~L~~L 366 (549)
T 2z81_A 308 LLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKN-------------------SACKGAWPSLQTL 366 (549)
T ss_dssp HSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHH-------------------HTCTTSSTTCCEE
T ss_pred hcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccc-------------------hhhhhccccCcEE
Confidence 3567888888885 4665543 34467889999998887644333210 0113457889999
Q ss_pred ecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeec
Q 007039 446 ELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVF 525 (620)
Q Consensus 446 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~ 525 (620)
++++| .++.++... ..+..+++|++|++++| +++.+ +..+..+++|++|++++|. ++.+ +.. .+
T Consensus 367 ~Ls~N-~l~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l--p~~~~~~~~L~~L~Ls~N~-l~~l--~~~--------~~ 430 (549)
T 2z81_A 367 VLSQN-HLRSMQKTG-EILLTLKNLTSLDISRN-TFHPM--PDSCQWPEKMRFLNLSSTG-IRVV--KTC--------IP 430 (549)
T ss_dssp ECTTS-CCCCHHHHH-HHGGGCTTCCEEECTTC-CCCCC--CSCCCCCTTCCEEECTTSC-CSCC--CTT--------SC
T ss_pred EccCC-cccccccch-hhhhcCCCCCEEECCCC-CCccC--ChhhcccccccEEECCCCC-cccc--cch--------hc
Confidence 99988 565543210 01246889999999996 77776 3456788999999999976 4433 111 13
Q ss_pred cccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcC
Q 007039 526 PKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNN 605 (620)
Q Consensus 526 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 605 (620)
++|+.|+++++ +++.+ ...+++|++|++++| +++.+|... .+++|++|++++| +
T Consensus 431 ~~L~~L~Ls~N-~l~~~-------------------~~~l~~L~~L~Ls~N-~l~~ip~~~----~l~~L~~L~Ls~N-~ 484 (549)
T 2z81_A 431 QTLEVLDVSNN-NLDSF-------------------SLFLPRLQELYISRN-KLKTLPDAS----LFPVLLVMKISRN-Q 484 (549)
T ss_dssp TTCSEEECCSS-CCSCC-------------------CCCCTTCCEEECCSS-CCSSCCCGG----GCTTCCEEECCSS-C
T ss_pred CCceEEECCCC-Chhhh-------------------cccCChhcEEECCCC-ccCcCCCcc----cCccCCEEecCCC-c
Confidence 58899999887 34432 146789999999999 788887643 5799999999998 6
Q ss_pred cccccchhhhhhc
Q 007039 606 LLNIFPPLVRLLY 618 (620)
Q Consensus 606 l~~~~p~~~~~~~ 618 (620)
++.+.|..+..+.
T Consensus 485 l~~~~~~~~~~l~ 497 (549)
T 2z81_A 485 LKSVPDGIFDRLT 497 (549)
T ss_dssp CCCCCTTGGGGCT
T ss_pred cCCcCHHHHhcCc
Confidence 7776666666554
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.8e-29 Score=273.27 Aligned_cols=516 Identities=16% Similarity=0.111 Sum_probs=286.0
Q ss_pred CccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC
Q 007039 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (620)
Q Consensus 23 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 100 (620)
.+.+..++|. +++.++++|++++|.++.+++. .++++|++|++++|.+ ..+++..|.++++|++|++++|+++.+
T Consensus 39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 3445566664 5677888888888888877653 2788888888888877 667776678888888888888888887
Q ss_pred hh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHh
Q 007039 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 101 p~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
|. .|+++.+|++|++++|.+.. + ..|+++++|++|++++|.+. .+|..++.+++|++|++++|. +..++...+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence 64 57888888888888888877 4 46888888888888888776 356778888888888888887 5666554465
Q ss_pred CCcCCc----EEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCc-ccc-cCceEEEEEeCCCC---
Q 007039 176 KLSQLE----ELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPD-FVS-VELQRYKIRIGDGP--- 245 (620)
Q Consensus 176 ~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~~-~~L~~L~l~~~~~~--- 245 (620)
.+.+++ .++++.+.+.... ........++.+.+..+... .+... +.. ..++...+......
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~---------~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQ---------PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEEC---------TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred chhhhhhhhhhhhcccCcccccC---------cccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 555443 4566665554211 11112223344444443211 00000 011 23333333221100
Q ss_pred --CCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCC
Q 007039 246 --EDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSE 323 (620)
Q Consensus 246 --~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 323 (620)
.......+.....+....+....................+++.+.+.+...... ..+.....|+.|++.++..
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-----KDFSYNFGWQHLELVNCKF 340 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-----GGGGSCCCCSEEEEESCEE
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-----cccccchhhhhhhcccccc
Confidence 111111122333333333332111111110111111233455554443332111 1122455677777766631
Q ss_pred ceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEe
Q 007039 324 ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (620)
Q Consensus 324 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (620)
..+ ....++.|+.+.+.+...-. ......+++|+.|.+.+..--...........+.+|+.+++..
T Consensus 341 -~~~-------~~~~l~~L~~l~l~~n~~~~------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~ 406 (635)
T 4g8a_A 341 -GQF-------PTLKLKSLKRLTFTSNKGGN------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF 406 (635)
T ss_dssp -SSC-------CCCBCTTCCEEEEESCCSCC------BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred -cCc-------CcccchhhhhcccccccCCC------Ccccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence 111 22345556665555433111 0113346777777776643222211222344566777776655
Q ss_pred cCCcccccccCCCCCCCCcc-cccccc---CCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCC
Q 007039 404 CDDLKMIIGPDMEKPPTTQG-FIEINA---EDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCH 479 (620)
Q Consensus 404 c~~l~~~~~~~~~~~~~l~~-~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~ 479 (620)
+.... .. ......+.+.. ....+. ......+..+++++.++++++ .+..+..... ..+++|++|+++++.
T Consensus 407 ~~~~~-~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~---~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 407 NGVIT-MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF---NGLSSLEVLKMAGNS 480 (635)
T ss_dssp CSEEE-EC-SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTT---TTCTTCCEEECTTCE
T ss_pred ccccc-cc-ccccccccccchhhhhcccccccccccccccccccccccccc-cccccccccc---ccchhhhhhhhhhcc
Confidence 43222 11 11111222222 000010 011123456677888888776 4444433333 357888888888876
Q ss_pred CcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccc
Q 007039 480 RLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLF 559 (620)
Q Consensus 480 ~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~ 559 (620)
....+ .+..+..+++|++|++++| +++.+. +..... +++|++|+|+++ +++.+. |
T Consensus 481 ~~~~~-~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~------l~~L~~L~Ls~N-~l~~l~---------------~ 535 (635)
T 4g8a_A 481 FQENF-LPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNS------LSSLQVLNMSHN-NFFSLD---------------T 535 (635)
T ss_dssp EGGGE-ECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTT------CTTCCEEECTTS-CCCBCC---------------C
T ss_pred ccccc-CchhhhhccccCEEECCCC-ccCCcC-hHHHcC------CCCCCEEECCCC-cCCCCC---------------h
Confidence 55554 3456778888888888887 455532 333343 678888888876 343332 2
Q ss_pred cccccCCCccEEEeccccchhhhccccccCCcc-cCccEEEeccCc
Q 007039 560 DEKVRLPSLEVLHISEADKLRKIWHHQLASKSF-SKLKKLKISGCN 604 (620)
Q Consensus 560 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~-~sL~~L~i~~C~ 604 (620)
..+..+++|+.|+++++ +|+.+++..+ .++ ++|+.|++.++|
T Consensus 536 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~l--~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLN-HIMTSKKQEL--QHFPSSLAFLNLTQND 578 (635)
T ss_dssp GGGTTCTTCCEEECTTS-CCCBCCSSCT--TCCCTTCCEEECTTCC
T ss_pred hHHhCCCCCCEEECCCC-cCCCCCHHHH--HhhhCcCCEEEeeCCC
Confidence 24567889999999988 6777766543 355 689999997654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.8e-29 Score=276.11 Aligned_cols=449 Identities=16% Similarity=0.129 Sum_probs=256.2
Q ss_pred CCcEEEEccCCCCc-CCCCcC-CCCCccEEEcccCCCC-----Cc------ccchHHHh---------------------
Q 007039 37 KDPIAISLPHRDIQ-ELPERL-QCPNLQLFLLYTEGNG-----PM------QVSDHFFE--------------------- 82 (620)
Q Consensus 37 ~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~-----~~------~~~~~~~~--------------------- 82 (620)
.+++.|+++++.+. .+|+.. ++++|++|++++|... .. .+|.....
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57899999999884 555544 8999999999888420 00 11111000
Q ss_pred ------------------cCCCCcEEEcC--CCCCCCChhhhhcccCCcEEEccCCCCCC-------------------h
Q 007039 83 ------------------GMEGLKVLQFP--GIGSSSLPSSLGRLINLQTLCLDWCELAD-------------------I 123 (620)
Q Consensus 83 ------------------~l~~Lr~L~l~--~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-------------------~ 123 (620)
....++.+.+. +|++..+|+.++++++|++|++++|.+.. |
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00011111111 23444577777777777777777777654 3
Q ss_pred hhhc--CCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCc-ccc-ccchHHHhCC------cCCcEEEcCCCcccc
Q 007039 124 AAIG--QLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCW-WLE-VIAPNVISKL------SQLEELYMGNGFSGW 192 (620)
Q Consensus 124 ~~i~--~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~-~~~-~~p~~~l~~l------~~L~~L~l~~~~~~~ 192 (620)
..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ... .+|.. ++++ ++|++|++++|.+.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-
Confidence 5666 7777777777777544 677777777777777777776 333 46665 5555 77777777777665
Q ss_pred ccccCCCCcchh--hhcCCCCCCEEEeecCCCC-CCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccc
Q 007039 193 EKVEGGSNASLV--ELERLTELTTLEIEVPDAE-ILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 193 ~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
..+. .++++++|++|++++|... .+| .+ ..+++|+.|++++
T Consensus 319 --------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~------------------------~~l~~L~~L~L~~--- 362 (636)
T 4eco_A 319 --------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF------------------------GSEIKLASLNLAY--- 362 (636)
T ss_dssp --------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC------------------------EEEEEESEEECCS---
T ss_pred --------ccCchhhhccCCCCCEEeCcCCcCccchh-hh------------------------CCCCCCCEEECCC---
Confidence 2223 5777777777777777654 444 21 2222333333332
Q ss_pred cccccchhHHHHHhccccceecccccChhhhcccCCcCCCccc-cceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPR-LKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 270 ~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
+... .+... +..+++ |++|+++++. +..++. ......+++|+.|+++
T Consensus 363 ------------------------N~l~-~lp~~---l~~l~~~L~~L~Ls~N~-l~~lp~---~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 363 ------------------------NQIT-EIPAN---FCGFTEQVENLSFAHNK-LKYIPN---IFDAKSVSVMSAIDFS 410 (636)
T ss_dssp ------------------------SEEE-ECCTT---SEEECTTCCEEECCSSC-CSSCCS---CCCTTCSSCEEEEECC
T ss_pred ------------------------Cccc-cccHh---hhhhcccCcEEEccCCc-Ccccch---hhhhcccCccCEEECc
Confidence 1100 01111 223444 5555555543 112211 0011123355555555
Q ss_pred cccCchhhhccCCC----CCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccc
Q 007039 349 FLTNLETICYSQLR----EDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF 424 (620)
Q Consensus 349 ~~~~l~~~~~~~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~ 424 (620)
++.--...+.. +. ..-.+++|+.|++.++ .++.++. ..+..+++|++|+++++. +..++.......
T Consensus 411 ~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~------ 480 (636)
T 4eco_A 411 YNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM-LTEIPKNSLKDE------ 480 (636)
T ss_dssp SSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCSSSSEET------
T ss_pred CCcCCCcchhh-hcccccccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC-CCCcCHHHhccc------
Confidence 54311111111 00 0114668999999886 5566654 355678999999999865 444442110000
Q ss_pred cccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 425 IEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 425 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
......+++|+.|+++++ ++..++..... ..+++|++|+++++ .++.+ +..+..+++|+.|+++++
T Consensus 481 --------~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~--~~l~~L~~L~Ls~N-~l~~i--p~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 481 --------NENFKNTYLLTSIDLRFN-KLTKLSDDFRA--TTLPYLVGIDLSYN-SFSKF--PTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp --------TEECTTGGGCCEEECCSS-CCCBCCGGGST--TTCTTCCEEECCSS-CCSSC--CCGGGGCSSCCEEECCSC
T ss_pred --------cccccccCCccEEECcCC-cCCccChhhhh--ccCCCcCEEECCCC-CCCCc--ChhhhcCCCCCEEECCCC
Confidence 001123459999999998 66666544320 25899999999995 77776 355678999999999764
Q ss_pred cc------ccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccc
Q 007039 505 RS------IEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADK 578 (620)
Q Consensus 505 ~~------l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~ 578 (620)
+. ...+ +..... +++|++|+|+++.- .. +|..+. ++|++|++++|+
T Consensus 547 ~~ls~N~l~~~~--p~~l~~------l~~L~~L~Ls~N~l-~~----------------ip~~~~--~~L~~L~Ls~N~- 598 (636)
T 4eco_A 547 RDAQGNRTLREW--PEGITL------CPSLTQLQIGSNDI-RK----------------VNEKIT--PNISVLDIKDNP- 598 (636)
T ss_dssp BCTTCCBCCCCC--CTTGGG------CSSCCEEECCSSCC-CB----------------CCSCCC--TTCCEEECCSCT-
T ss_pred cccccCcccccC--hHHHhc------CCCCCEEECCCCcC-Cc----------------cCHhHh--CcCCEEECcCCC-
Confidence 42 2222 333333 78899999988742 33 344433 799999999995
Q ss_pred hhhhccccc------cCCcccCccEEEeccCcCcc
Q 007039 579 LRKIWHHQL------ASKSFSKLKKLKISGCNNLL 607 (620)
Q Consensus 579 L~~l~~~~~------~~~~~~sL~~L~i~~C~~l~ 607 (620)
++.+....+ ....+.-.+..+|.+|+++.
T Consensus 599 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 599 NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 433321111 01122334556888999875
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.1e-28 Score=266.80 Aligned_cols=470 Identities=13% Similarity=0.040 Sum_probs=248.3
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
.+...++++++++.. ..+|..+ .++|++|++++|.+..++ ..++++++|++|++++|.+.. +..|+++++|+
T Consensus 29 ~~~~~~~l~ls~~~L--~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNL--THVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCC--CSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCC--ccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 344446666666665 4566543 266777777777766654 466677777777777777665 45667777777
Q ss_pred EEecCCCCCCCCChhccCCCCCCEEeCCCCccccccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCC
Q 007039 134 ILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (620)
Q Consensus 134 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (620)
+|++++|.++.+|.. .+++|++|++++|. +..++. ..++++++|++|+++++.+. ...+..+.++ +|
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~--------~~~~~~l~~L-~L 171 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR--------QLDLLPVAHL-HL 171 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC--------TTTTGGGTTS-CE
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc--------cCchhhhhhc-ee
Confidence 777777777777665 67777777777766 454431 23677777777777776654 1122333333 33
Q ss_pred CEEEeecCCC--CCC-CCcccccCceEEEEE--eCCCCCCCCCccccccccccEEEEecccc-cccccchhHHHHHhccc
Q 007039 213 TTLEIEVPDA--EIL-PPDFVSVELQRYKIR--IGDGPEDEFDPLLVKSEASRLMMLKGIKK-VSILQENDGTKMLLQRT 286 (620)
Q Consensus 213 ~~L~l~~~~~--~~~-~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~i~~~~~~~~~l~~L 286 (620)
++|++++|.. ... +..+..-..+.+.+. .+....+.........++|+.++++++.. +..+.........++++
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 7777777655 222 222222122333332 22222222222244566777777776321 01111111111123455
Q ss_pred cceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCch-hhhccCCCCCC
Q 007039 287 EDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQ 365 (620)
Q Consensus 287 ~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~ 365 (620)
+.|.+.++.........+......++|++|+++++.-...++.... ....++|+.|.+.++..-. .++...+...-
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~---~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF---TYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC---CCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh---hcccccchheehhhcccceeecChhhhhhhh
Confidence 5555544332111111110011234777777777641111111000 0001344444433322110 11100000000
Q ss_pred cCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE
Q 007039 366 SFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL 445 (620)
Q Consensus 366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 445 (620)
..++|++|++.++.- ..... ...+++|++|+++++.--...+ ..+..+++|+.|
T Consensus 329 ~~~~L~~L~l~~n~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L 382 (562)
T 3a79_B 329 AEMNIKMLSISDTPF-IHMVC---PPSPSSFTFLNFTQNVFTDSVF----------------------QGCSTLKRLQTL 382 (562)
T ss_dssp HTCCCSEEEEESSCC-CCCCC---CSSCCCCCEEECCSSCCCTTTT----------------------TTCCSCSSCCEE
T ss_pred ccCcceEEEccCCCc-ccccC---ccCCCCceEEECCCCccccchh----------------------hhhcccCCCCEE
Confidence 124577777777542 22211 1356777777777754322121 223557888888
Q ss_pred ecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeec
Q 007039 446 ELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVF 525 (620)
Q Consensus 446 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~ 525 (620)
+++++ .++.++... ..+..+++|++|+++++ .++...+...+..+++|++|++++|.--..+ +.. +
T Consensus 383 ~L~~N-~l~~~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~---------l 448 (562)
T 3a79_B 383 ILQRN-GLKNFFKVA-LMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRC---------L 448 (562)
T ss_dssp ECCSS-CCCBTTHHH-HTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGG--GSS---------C
T ss_pred ECCCC-CcCCcccch-hhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcch--hhh---------h
Confidence 88887 555442210 11235788888888885 5555224455677788888888887522211 111 2
Q ss_pred -cccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCc
Q 007039 526 -PKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCN 604 (620)
Q Consensus 526 -~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~ 604 (620)
++|+.|+++++ .++ ++|.....+++|++|+++++ .++.+|... +..+++|++|++.++|
T Consensus 449 ~~~L~~L~L~~N-~l~----------------~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 449 PPKVKVLDLHNN-RIM----------------SIPKDVTHLQALQELNVASN-QLKSVPDGV--FDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCSEEECCSS-CCC----------------CCCTTTTSSCCCSEEECCSS-CCCCCCTTS--TTTCTTCCCEECCSCC
T ss_pred cCcCCEEECCCC-cCc----------------ccChhhcCCCCCCEEECCCC-CCCCCCHHH--HhcCCCCCEEEecCCC
Confidence 47888888776 333 45666678899999999998 688887763 4578999999999876
Q ss_pred Cc
Q 007039 605 NL 606 (620)
Q Consensus 605 ~l 606 (620)
--
T Consensus 509 ~~ 510 (562)
T 3a79_B 509 WD 510 (562)
T ss_dssp BC
T ss_pred cC
Confidence 43
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=261.59 Aligned_cols=450 Identities=12% Similarity=0.052 Sum_probs=286.4
Q ss_pred chhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhh
Q 007039 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 26 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 103 (620)
+...+|. ++++++++|++++|.+..+++ ..++++|++|++++|.+ ..+++..+.++++|++|++++|.+..+|..
T Consensus 11 ~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 87 (520)
T 2z7x_B 11 GLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH 87 (520)
T ss_dssp CCSSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred Ccccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc
Confidence 3444443 456899999999999988864 34899999999999998 556555569999999999999999999876
Q ss_pred hhcccCCcEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCC--CEEeCCCCcc--ccccchHHHhC
Q 007039 104 LGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVISK 176 (620)
Q Consensus 104 ~~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~l~~ 176 (620)
.+++|++|++++|.+.. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|.. +..
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~ 162 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQD 162 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTT
T ss_pred --ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccc
Confidence 89999999999999875 5899999999999999998886 457778888 9999999984 3444544 666
Q ss_pred Cc-CCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccc
Q 007039 177 LS-QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVK 255 (620)
Q Consensus 177 l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 255 (620)
+. +.-.+++.++.+.. ......+.++++|+.+++++|........+. .. .+.+..
T Consensus 163 l~~~~l~l~l~~n~~~~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~----------------~~~l~~ 218 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFH-------FILDVSVKTVANLELSNIKCVLEDNKCSYFL-SI----------------LAKLQT 218 (520)
T ss_dssp CCEEEEEEECCSSSCCC-------CCCCCCCTTCSEEEECCEEECCSTTTTHHHH-HH----------------HHGGGG
T ss_pred cccceEEEEeccCcchh-------hhhhhhhhcccceeeccccccccccccceee-cc----------------hhhhcc
Confidence 55 23345666666542 1222456678899999998875210000000 00 011344
Q ss_pred cccccEEEEecccccccccc--hhHHH--HHhccccceecccccChhhhcccCCc--CCCccccceEEeccCCCceEeee
Q 007039 256 SEASRLMMLKGIKKVSILQE--NDGTK--MLLQRTEDLWLETLEGVQSVVHELDD--GEGFPRLKRLLVTDCSEILHIVG 329 (620)
Q Consensus 256 ~~~L~~L~l~~~~~~~~i~~--~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~ 329 (620)
.++++.|.+.++ .+.. ..++. ...++|++|++.++.....+...+.. .+.+++|+.++++++.- .++.
T Consensus 219 l~~L~~L~l~~~----~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~ 292 (520)
T 2z7x_B 219 NPKLSNLTLNNI----ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ 292 (520)
T ss_dssp CTTCCEEEEEEE----EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred ccchhhcccccc----ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence 455566665552 2211 11111 11347888888766533222222200 14677888888877642 1110
Q ss_pred cccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccc
Q 007039 330 SVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (620)
Q Consensus 330 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 409 (620)
... .....-++|+.|+++++. +..... ...+++|++|++.+|. ++...+ ..+.++++|++|++++|.. ..
T Consensus 293 ~~~-~~~~~~~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l-~~ 362 (520)
T 2z7x_B 293 SYI-YEIFSNMNIKNFTVSGTR-MVHMLC-----PSKISPFLHLDFSNNL-LTDTVF-ENCGHLTELETLILQMNQL-KE 362 (520)
T ss_dssp HHH-HHHHHTCCCSEEEEESSC-CCCCCC-----CSSCCCCCEEECCSSC-CCTTTT-TTCCCCSSCCEEECCSSCC-CB
T ss_pred hhh-hcccccCceeEEEcCCCc-cccccc-----hhhCCcccEEEeECCc-cChhhh-hhhccCCCCCEEEccCCcc-Cc
Confidence 000 000011458888888765 222211 2567888888888864 443222 2346788888888887653 32
Q ss_pred ccccCCCCCCCCccccccccCCCCccccccCccceEecCCcccccc-ccccCCccccccCCccEEEEecCCCcceecchh
Q 007039 410 IIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKK-LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYS 488 (620)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 488 (620)
+... +..+..+++|++|+++++ .+.. ++...+ ..+++|++|++++| .++...+
T Consensus 363 l~~~-------------------~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~---~~l~~L~~L~Ls~N-~l~~~~~-- 416 (520)
T 2z7x_B 363 LSKI-------------------AEMTTQMKSLQQLDISQN-SVSYDEKKGDC---SWTKSLLSLNMSSN-ILTDTIF-- 416 (520)
T ss_dssp HHHH-------------------HHHHTTCTTCCEEECCSS-CCBCCGGGCSC---CCCTTCCEEECCSS-CCCGGGG--
T ss_pred cccc-------------------hHHHhhCCCCCEEECCCC-cCCcccccchh---ccCccCCEEECcCC-CCCcchh--
Confidence 1100 012355788888888887 4444 554433 35788888888886 4543321
Q ss_pred hhccc-CcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccc-cccCC
Q 007039 489 MVNSL-GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDE-KVRLP 566 (620)
Q Consensus 489 ~~~~l-~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~-~~~l~ 566 (620)
..+ ++|+.|++++| .++.+ +..... +++|++|+++++ .++.+ |.. +..++
T Consensus 417 --~~l~~~L~~L~Ls~N-~l~~i--p~~~~~------l~~L~~L~L~~N-~l~~l----------------~~~~~~~l~ 468 (520)
T 2z7x_B 417 --RCLPPRIKVLDLHSN-KIKSI--PKQVVK------LEALQELNVASN-QLKSV----------------PDGIFDRLT 468 (520)
T ss_dssp --GSCCTTCCEEECCSS-CCCCC--CGGGGG------CTTCCEEECCSS-CCCCC----------------CTTTTTTCT
T ss_pred --hhhcccCCEEECCCC-ccccc--chhhhc------CCCCCEEECCCC-cCCcc----------------CHHHhccCC
Confidence 222 68888888887 45544 333223 778888888877 34443 333 56788
Q ss_pred CccEEEecccc
Q 007039 567 SLEVLHISEAD 577 (620)
Q Consensus 567 ~L~~L~i~~C~ 577 (620)
+|++|++++++
T Consensus 469 ~L~~L~l~~N~ 479 (520)
T 2z7x_B 469 SLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECcCCC
Confidence 99999998875
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.7e-28 Score=272.75 Aligned_cols=392 Identities=14% Similarity=0.116 Sum_probs=249.1
Q ss_pred CCcEEEEccCCCCc-CCCCcC-CCCCccEEEc-ccCCC------C-----------------------------------
Q 007039 37 KDPIAISLPHRDIQ-ELPERL-QCPNLQLFLL-YTEGN------G----------------------------------- 72 (620)
Q Consensus 37 ~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l-~~~~~------~----------------------------------- 72 (620)
.+++.|+++++.+. .+|+.. ++++|++|++ ++|.. .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 67999999999995 566555 9999999999 55521 0
Q ss_pred ----------------------------------CcccchHHHhcCCCCcEEEcCCCCCCC------------------C
Q 007039 73 ----------------------------------PMQVSDHFFEGMEGLKVLQFPGIGSSS------------------L 100 (620)
Q Consensus 73 ----------------------------------~~~~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 100 (620)
...+|.. +.++++|++|++++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0016655 4788999999999999887 8
Q ss_pred hhhhh--cccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCC-CCC--CChhccCCC-------CCCEEeCCCCccc
Q 007039 101 PSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSN-INQ--LPVEIGQLT-------RLQLLDLSNCWWL 166 (620)
Q Consensus 101 p~~~~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~ 166 (620)
|+.++ ++++|++|++++|.+.. |..++++++|++|++++|. ++. +|..+++++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 88877 89999999999988654 7888999999999999996 774 887777665 89999999988 5
Q ss_pred cccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cC-ceEEEEEeCC
Q 007039 167 EVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VE-LQRYKIRIGD 243 (620)
Q Consensus 167 ~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~~ 243 (620)
..+|. ..++++++|++|++++|.+. .. ..++++++|+.|++++|....+|..+.. ++ |+.|.+..+.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~---------~l-p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR---------HL-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC---------BC-CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc---------cc-hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 68887 23889999999999888765 12 2678888899999998888888877665 66 8888886554
Q ss_pred CCCCCCCcccccc--ccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCC--CccccceEEec
Q 007039 244 GPEDEFDPLLVKS--EASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGE--GFPRLKRLLVT 319 (620)
Q Consensus 244 ~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~~~~L~~L~l~ 319 (620)
..... ..+... ++|+.|++++ +.....+........ ..++|+.|+++
T Consensus 631 L~~lp--~~~~~~~~~~L~~L~Ls~---------------------------N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 631 LKYIP--NIFNAKSVYVMGSVDFSY---------------------------NKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp CCSCC--SCCCTTCSSCEEEEECCS---------------------------SCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCcCc--hhhhccccCCCCEEECcC---------------------------CcCCCccccchhhhccccCCCcCEEEcc
Confidence 33111 112222 2255555555 322111100000011 23467777777
Q ss_pred cCCCceEeeecccccccccccccchhccccccCchhhhccCCCC----CCcCCCCcEEEeecCCCceeecchhHHH--Hh
Q 007039 320 DCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE----DQSFSNLRIINVDSCRKLKYLFSFSMAK--NL 393 (620)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~l 393 (620)
++. +..++. .....+++|+.|+++++ .+..++...... ...+++|+.|++.+| .++.+|.. +. .+
T Consensus 682 ~N~-L~~lp~----~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~--l~~~~l 752 (876)
T 4ecn_A 682 YNE-IQKFPT----ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD--FRATTL 752 (876)
T ss_dssp SSC-CCSCCH----HHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG--GSTTTC
T ss_pred CCc-CCccCH----HHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHH--hhhccC
Confidence 664 222211 01224567777777664 344444322110 112347778888776 55555432 33 67
Q ss_pred cccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccc--cccccCCccccccCCcc
Q 007039 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIK--KLWSDQFQGIYCCQNLT 471 (620)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~~l~~L~ 471 (620)
++|+.|+++++. +..++ .....+++|+.|++++++.+. .+.......+..+++|+
T Consensus 753 ~~L~~L~Ls~N~-L~~lp----------------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 753 PYLSNMDVSYNC-FSSFP----------------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp TTCCEEECCSSC-CSSCC----------------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CCcCEEEeCCCC-CCccc----------------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 788888877753 33332 224467778888877643111 11111122344677888
Q ss_pred EEEEecCCCcceecchhhhcccCcccEEEEccccc
Q 007039 472 KVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRS 506 (620)
Q Consensus 472 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 506 (620)
+|++++| .+..++ .. + .++|+.|+|++|+-
T Consensus 810 ~L~Ls~N-~L~~Ip-~~-l--~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 810 QLQIGSN-DIRKVD-EK-L--TPQLYILDIADNPN 839 (876)
T ss_dssp EEECCSS-CCCBCC-SC-C--CSSSCEEECCSCTT
T ss_pred EEECCCC-CCCccC-Hh-h--cCCCCEEECCCCCC
Confidence 8888875 456663 22 2 26788888888763
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.7e-28 Score=264.82 Aligned_cols=421 Identities=14% Similarity=0.104 Sum_probs=292.8
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-------------CChhh---------------------h
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-------------SLPSS---------------------L 104 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-------------~lp~~---------------------~ 104 (620)
.+++.|++.++.. .+.+|..+ +++++|++|++++|.+. .+|.. +
T Consensus 81 ~~V~~L~L~~~~l-~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGA-SGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCC-EEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCccc-CCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence 5788999999988 67788765 89999999999999641 11111 1
Q ss_pred h-------------------cccCCcEEEcc--CCCCCC-hhhhcCCCCCCEEecCCCCCCC------------------
Q 007039 105 G-------------------RLINLQTLCLD--WCELAD-IAAIGQLKKLEILSLAYSNINQ------------------ 144 (620)
Q Consensus 105 ~-------------------~l~~L~~L~L~--~~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------ 144 (620)
. ....++.+.+. .|.+.. |..++++++|++|++++|.++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 1 00111112221 344556 7789999999999999999998
Q ss_pred CChhcc--CCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc-cccccccCCCCcchhhhcCC------CCCCEE
Q 007039 145 LPVEIG--QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF-SGWEKVEGGSNASLVELERL------TELTTL 215 (620)
Q Consensus 145 lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l------~~L~~L 215 (620)
+|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +.+ ...+..++++ ++|++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEE
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEE
Confidence 999999 9999999999999877888876 9999999999999997 652 0233455554 999999
Q ss_pred EeecCCCCCCCC--cccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceeccc
Q 007039 216 EIEVPDAEILPP--DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293 (620)
Q Consensus 216 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~ 293 (620)
++++|....+|. . +..+++|+.|++++
T Consensus 311 ~L~~n~l~~ip~~~~------------------------l~~l~~L~~L~L~~--------------------------- 339 (636)
T 4eco_A 311 YIGYNNLKTFPVETS------------------------LQKMKKLGMLECLY--------------------------- 339 (636)
T ss_dssp ECCSSCCSSCCCHHH------------------------HTTCTTCCEEECCS---------------------------
T ss_pred ECCCCcCCccCchhh------------------------hccCCCCCEEeCcC---------------------------
Confidence 999998776665 4 22333333333333
Q ss_pred ccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccc-cchhccccccCchhhhccCCCCCCcCCCCcE
Q 007039 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPL-LEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (620)
Q Consensus 294 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 372 (620)
+.....+. .++.+++|++|+++++. +..++ .....+++ |+.|+++++. ++.++.. +. ...+++|+.
T Consensus 340 N~l~g~ip----~~~~l~~L~~L~L~~N~-l~~lp-----~~l~~l~~~L~~L~Ls~N~-l~~lp~~-~~-~~~l~~L~~ 406 (636)
T 4eco_A 340 NQLEGKLP----AFGSEIKLASLNLAYNQ-ITEIP-----ANFCGFTEQVENLSFAHNK-LKYIPNI-FD-AKSVSVMSA 406 (636)
T ss_dssp CCCEEECC----CCEEEEEESEEECCSSE-EEECC-----TTSEEECTTCCEEECCSSC-CSSCCSC-CC-TTCSSCEEE
T ss_pred CcCccchh----hhCCCCCCCEEECCCCc-ccccc-----HhhhhhcccCcEEEccCCc-Ccccchh-hh-hcccCccCE
Confidence 22111111 24578999999999984 33332 14567788 9999999865 5555432 11 223558999
Q ss_pred EEeecCCCceeecchhHHH-------HhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE
Q 007039 373 INVDSCRKLKYLFSFSMAK-------NLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL 445 (620)
Q Consensus 373 L~l~~c~~l~~~~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 445 (620)
|++.++.--...|. .+. .+++|++|+++++. +..++. .....+++|+.|
T Consensus 407 L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~---------------------~~~~~l~~L~~L 462 (636)
T 4eco_A 407 IDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQ-ISKFPK---------------------ELFSTGSPLSSI 462 (636)
T ss_dssp EECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSC-CCSCCT---------------------HHHHTTCCCSEE
T ss_pred EECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCc-cCcCCH---------------------HHHccCCCCCEE
Confidence 99998743222211 122 56799999999864 333331 123458999999
Q ss_pred ecCCccccccccccCCcc----ccccCCccEEEEecCCCcceecchhhhc--ccCcccEEEEcccccccccccccccCCc
Q 007039 446 ELVSLTNIKKLWSDQFQG----IYCCQNLTKVTVWSCHRLKYLFSYSMVN--SLGQLQHLEIRNCRSIEGVVNTTTLGGR 519 (620)
Q Consensus 446 ~l~~~~~l~~l~~~~~~~----~~~l~~L~~L~i~~C~~L~~l~~~~~~~--~l~~L~~L~i~~C~~l~~~~~~~~~~~~ 519 (620)
+++++ .+..++...... ...+++|++|+++++ .++.++ ..+. .+++|++|+++++. ++.+ +.....
T Consensus 463 ~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~~~~~~l~~L~~L~Ls~N~-l~~i--p~~~~~- 534 (636)
T 4eco_A 463 NLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLS--DDFRATTLPYLVGIDLSYNS-FSKF--PTQPLN- 534 (636)
T ss_dssp ECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCC--GGGSTTTCTTCCEEECCSSC-CSSC--CCGGGG-
T ss_pred ECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccC--hhhhhccCCCcCEEECCCCC-CCCc--Chhhhc-
Confidence 99998 666776654431 123449999999995 788773 4454 89999999999965 4443 444444
Q ss_pred cceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEE
Q 007039 520 DEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLK 599 (620)
Q Consensus 520 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~ 599 (620)
+++|+.|+++++..+.. ..-...+|..+..+++|++|++++|. ++.+|.. + +++|++|+
T Consensus 535 -----l~~L~~L~Ls~N~~ls~----------N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~----~~~L~~L~ 593 (636)
T 4eco_A 535 -----SSTLKGFGIRNQRDAQG----------NRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-I----TPNISVLD 593 (636)
T ss_dssp -----CSSCCEEECCSCBCTTC----------CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-C----CTTCCEEE
T ss_pred -----CCCCCEEECCCCccccc----------CcccccChHHHhcCCCCCEEECCCCc-CCccCHh-H----hCcCCEEE
Confidence 88999999987763322 12234567788899999999999994 6888765 2 28999999
Q ss_pred eccCcCc
Q 007039 600 ISGCNNL 606 (620)
Q Consensus 600 i~~C~~l 606 (620)
+++|+-.
T Consensus 594 Ls~N~l~ 600 (636)
T 4eco_A 594 IKDNPNI 600 (636)
T ss_dssp CCSCTTC
T ss_pred CcCCCCc
Confidence 9999744
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1e-27 Score=266.47 Aligned_cols=450 Identities=14% Similarity=0.069 Sum_probs=264.1
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEc-CCCCCCCC-hh----------------------------------
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQF-PGIGSSSL-PS---------------------------------- 102 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l-~~~~~~~l-p~---------------------------------- 102 (620)
.++..|++.++.. .+.+|+.+ +++++|++|++ ++|.+... |.
T Consensus 323 ~~V~~L~Ls~~~L-~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFGA-KGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTCC-EEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCCC-CCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 5788999999988 67788775 89999999999 66642110 00
Q ss_pred ------hh-----------hcccCCcEEEccC--CCCCC-hhhhcCCCCCCEEecCCCCCCC------------------
Q 007039 103 ------SL-----------GRLINLQTLCLDW--CELAD-IAAIGQLKKLEILSLAYSNINQ------------------ 144 (620)
Q Consensus 103 ------~~-----------~~l~~L~~L~L~~--~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------ 144 (620)
.+ .....++.+.+.. |.+.. |..++++++|++|++++|.++.
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 0111122222222 33444 5667777777777777777776
Q ss_pred CChhcc--CCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc-cccccccCCCCcchhhhc-------CCCCCCE
Q 007039 145 LPVEIG--QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF-SGWEKVEGGSNASLVELE-------RLTELTT 214 (620)
Q Consensus 145 lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~-------~l~~L~~ 214 (620)
+|..++ ++++|++|++++|...+.+|.. ++++++|+.|++++|. +.+ ...+..++ .+++|+.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg-------~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISA-------AQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCH-------HHHHHHHHHHHHCTTTTTTCCE
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCccc-------ccchHHHHhhhhcccccCCccE
Confidence 777776 7777888887777766667755 7777778888777776 542 01122233 3447777
Q ss_pred EEeecCCCCCCCC--cccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceec
Q 007039 215 LEIEVPDAEILPP--DFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL 291 (620)
Q Consensus 215 L~l~~~~~~~~~~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l 291 (620)
|++++|....+|. .+.. ++|+.|.+..+... ..|.+..+++|+.|++++
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L~~L~Ls~------------------------- 604 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDY------------------------- 604 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEESEEECCS-------------------------
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcceEEECcC-------------------------
Confidence 7777777766666 4444 66666666433322 111233444444444444
Q ss_pred ccccChhhhcccCCcCCCccc-cceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCC--cCC
Q 007039 292 ETLEGVQSVVHELDDGEGFPR-LKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQ--SFS 368 (620)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~~ 368 (620)
+... .+... +..+++ |+.|+++++. +..++. .......++|+.|+++++.--..++... ...+ .++
T Consensus 605 --N~l~-~lp~~---l~~l~~~L~~L~Ls~N~-L~~lp~---~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l~~~~~~ 673 (876)
T 4ecn_A 605 --NQIE-EIPED---FCAFTDQVEGLGFSHNK-LKYIPN---IFNAKSVYVMGSVDFSYNKIGSEGRNIS-CSMDDYKGI 673 (876)
T ss_dssp --SCCS-CCCTT---SCEECTTCCEEECCSSC-CCSCCS---CCCTTCSSCEEEEECCSSCTTTTSSSCS-SCTTTCCCC
T ss_pred --Cccc-cchHH---HhhccccCCEEECcCCC-CCcCch---hhhccccCCCCEEECcCCcCCCccccch-hhhccccCC
Confidence 3221 22222 335666 7788887774 323321 0112223447777777754221111100 0012 345
Q ss_pred CCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecC
Q 007039 369 NLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELV 448 (620)
Q Consensus 369 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 448 (620)
+|+.|++.+| .++.+|. ..+..+++|++|+++++ .+..++...... ......++++|+.|+++
T Consensus 674 ~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~--------------~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 674 NASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKP--------------KDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp CEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSC--------------TTSCCTTGGGCCEEECC
T ss_pred CcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhcc--------------ccccccccCCccEEECC
Confidence 8999999986 5566543 45568899999999986 444444211000 00112346699999999
Q ss_pred CccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccc-----cccccccccCCcccee
Q 007039 449 SLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSI-----EGVVNTTTLGGRDEFK 523 (620)
Q Consensus 449 ~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l-----~~~~~~~~~~~~~~~~ 523 (620)
+| ++..++..... ..+++|+.|+++++ .++.+ +..+..+++|+.|++++++.+ ... .+.....
T Consensus 737 ~N-~L~~lp~~l~~--~~l~~L~~L~Ls~N-~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~----- 804 (876)
T 4ecn_A 737 FN-KLTSLSDDFRA--TTLPYLSNMDVSYN-CFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITT----- 804 (876)
T ss_dssp SS-CCCCCCGGGST--TTCTTCCEEECCSS-CCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGG-----
T ss_pred CC-CCccchHHhhh--ccCCCcCEEEeCCC-CCCcc--chhhhcCCCCCEEECCCCCCccccccccc-ChHHHhc-----
Confidence 98 67766544320 25899999999995 77776 345779999999999875422 111 1333333
Q ss_pred eccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcccccc------CCcccCccE
Q 007039 524 VFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLA------SKSFSKLKK 597 (620)
Q Consensus 524 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~------~~~~~sL~~ 597 (620)
+++|+.|+|+++.- .. +|..+. ++|+.|++++|+ +..+....+. ...+..-+.
T Consensus 805 -L~~L~~L~Ls~N~L-~~----------------Ip~~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 805 -CPSLIQLQIGSNDI-RK----------------VDEKLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp -CSSCCEEECCSSCC-CB----------------CCSCCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTT
T ss_pred -CCCCCEEECCCCCC-Cc----------------cCHhhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCc
Confidence 78899999888742 43 344432 689999999996 4443222110 111222233
Q ss_pred EEeccCcCcc
Q 007039 598 LKISGCNNLL 607 (620)
Q Consensus 598 L~i~~C~~l~ 607 (620)
.+|.+|+++.
T Consensus 864 ~~I~gC~~L~ 873 (876)
T 4ecn_A 864 QDIRGCDALG 873 (876)
T ss_dssp SEEESCGGGC
T ss_pred cccCCCCCcc
Confidence 4678898874
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.7e-27 Score=248.69 Aligned_cols=342 Identities=16% Similarity=0.196 Sum_probs=230.5
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++|+|++.++.+..++....+++|++|++++|.. ..++. +..+++|++|++++|.+..++. ++++++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 567888888888888777666788888888888877 55555 5788888888888888888776 888888888888
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.+...+.++++|++|++++|.+..+| .++++++|++|++.++ ...++. +.++++|++|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS---- 190 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC----
Confidence 8888877434888888888888888888776 4788888888888642 344444 788888888888887765
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~ 275 (620)
.+..+.++++|++|+++++.....+. +..+++|+.|++++
T Consensus 191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~-------------------------~~~l~~L~~L~l~~--------- 230 (466)
T 1o6v_A 191 ------DISVLAKLTNLESLIATNNQISDITP-------------------------LGILTNLDELSLNG--------- 230 (466)
T ss_dssp ------CCGGGGGCTTCSEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCS---------
T ss_pred ------CChhhccCCCCCEEEecCCccccccc-------------------------ccccCCCCEEECCC---------
Confidence 22457778888888888776544332 22233344444433
Q ss_pred hhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchh
Q 007039 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (620)
Q Consensus 276 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 355 (620)
+... . ++.+..+++|++|+++++. +..+. ....+++|+.|+++++. +..
T Consensus 231 ------------------n~l~-~----~~~l~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~l~~n~-l~~ 279 (466)
T 1o6v_A 231 ------------------NQLK-D----IGTLASLTNLTDLDLANNQ-ISNLA------PLSGLTKLTELKLGANQ-ISN 279 (466)
T ss_dssp ------------------SCCC-C----CGGGGGCTTCSEEECCSSC-CCCCG------GGTTCTTCSEEECCSSC-CCC
T ss_pred ------------------CCcc-c----chhhhcCCCCCEEECCCCc-cccch------hhhcCCCCCEEECCCCc-cCc
Confidence 1100 0 0112345666666666653 11111 24455666666666543 222
Q ss_pred hhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCcc
Q 007039 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVH 435 (620)
Q Consensus 356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 435 (620)
++. ...+++|+.|++.+| .++.+++ +..+++|++|++++|. +..+. +
T Consensus 280 ~~~-----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-----------------------~ 326 (466)
T 1o6v_A 280 ISP-----LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDIS-----------------------P 326 (466)
T ss_dssp CGG-----GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCG-----------------------G
T ss_pred ccc-----ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCch-----------------------h
Confidence 221 345778888888875 4555544 4678888888888864 33322 1
Q ss_pred ccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccc
Q 007039 436 QVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 436 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
...+++|+.|++++| .+..+ ..+..+++|+.|++++| .++...+ +..+++|+.|++++|+
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDV-----SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCCC-ccCCc-----hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 356788888888888 55554 23346888999999886 5666633 6788889999998876
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.9e-26 Score=252.25 Aligned_cols=514 Identities=14% Similarity=0.082 Sum_probs=318.8
Q ss_pred EccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCC
Q 007039 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELA 121 (620)
Q Consensus 43 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~ 121 (620)
+=++..+..+|+... +++++|++++|.+ ..++...|.++++|++|++++|.+..+|+ +|+++++|++|+|++|.+.
T Consensus 37 ~c~~~~l~~vP~~lp-~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcCccCCCCC-cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 334445677775431 4799999999998 77887778999999999999999998864 7899999999999999998
Q ss_pred C-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCcccccc--chHHHhCCcCCcEEEcCCCcccccccc
Q 007039 122 D-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVI--APNVISKLSQLEELYMGNGFSGWEKVE 196 (620)
Q Consensus 122 ~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~--p~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (620)
. + ..|+++++|++|++++|.++.+|.. ++++++|++|++++|. +..+ |. .++.+++|++|++++|.+....+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~- 190 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYC- 190 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCG-GGGGCTTCCEEECCSSCCCEECG-
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCch-hhccchhhhhhcccCcccccccc-
Confidence 8 4 6789999999999999999998764 8999999999999998 5443 44 38899999999999998763221
Q ss_pred CCCCcchhhhcCCCC-CCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc--ccccc
Q 007039 197 GGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI--KKVSI 272 (620)
Q Consensus 197 ~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~ 272 (620)
..+..+.+++. ...++++.+....++..... ..++.+.+.............+.....++...+... .....
T Consensus 191 ----~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 191 ----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp ----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ----ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 23444555443 44678888877766665544 555566654321100000001223333433333221 11111
Q ss_pred ccchh-HHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcccccc
Q 007039 273 LQEND-GTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351 (620)
Q Consensus 273 i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 351 (620)
+.... ........+....+...............+..+.+++.+.+.++.. ..+ ........|+.|++.++.
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~------~~~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ERV------KDFSYNFGWQHLELVNCK 339 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EEC------GGGGSCCCCSEEEEESCE
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-ccc------cccccchhhhhhhccccc
Confidence 11000 0000112222222211111001111111133566777777776642 111 134455678888887764
Q ss_pred CchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccc-cCCCCCCCCccccccccC
Q 007039 352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG-PDMEKPPTTQGFIEINAE 430 (620)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~l~~~~~~~~~ 430 (620)
+..+ . ...++.|+.+.+.+...- ..+. ...+++|+.+++++......... ........+.........
T Consensus 340 -~~~~-----~-~~~l~~L~~l~l~~n~~~-~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 340 -FGQF-----P-TLKLKSLKRLTFTSNKGG-NAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp -ESSC-----C-CCBCTTCCEEEEESCCSC-CBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred -ccCc-----C-cccchhhhhcccccccCC-CCcc---cccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 2221 1 345788888888875432 2222 13678999998877543221110 001111122110000000
Q ss_pred --CCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccccccc
Q 007039 431 --DDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIE 508 (620)
Q Consensus 431 --~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 508 (620)
........+++|+.+++.++..........+ ..+++++.++++.+ .++.. ....+..+++|+.|+++++....
T Consensus 409 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp EEEECSCCTTCTTCCEEECTTSEEESTTSSCTT---TTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGG
T ss_pred cccccccccccccccchhhhhcccccccccccc---cccccccccccccc-ccccc-cccccccchhhhhhhhhhccccc
Confidence 0112345678888888888754443332222 46889999999884 66665 35667889999999999987665
Q ss_pred ccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcccccc
Q 007039 509 GVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLA 588 (620)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 588 (620)
.+ .++.... +++|+.|+|+++ +|+.+. |..+..+++|++|+++++ +|+.++...
T Consensus 484 ~~-~~~~~~~------l~~L~~L~Ls~N-~L~~l~---------------~~~f~~l~~L~~L~Ls~N-~l~~l~~~~-- 537 (635)
T 4g8a_A 484 NF-LPDIFTE------LRNLTFLDLSQC-QLEQLS---------------PTAFNSLSSLQVLNMSHN-NFFSLDTFP-- 537 (635)
T ss_dssp GE-ECSCCTT------CTTCCEEECTTS-CCCEEC---------------TTTTTTCTTCCEEECTTS-CCCBCCCGG--
T ss_pred cc-Cchhhhh------ccccCEEECCCC-ccCCcC---------------hHHHcCCCCCCEEECCCC-cCCCCChhH--
Confidence 43 2444444 789999999988 455432 345678899999999999 688886654
Q ss_pred CCcccCccEEEeccCcCcccccchhhhh
Q 007039 589 SKSFSKLKKLKISGCNNLLNIFPPLVRL 616 (620)
Q Consensus 589 ~~~~~sL~~L~i~~C~~l~~~~p~~~~~ 616 (620)
+.++++|+.|+++++ ++..+.|..++.
T Consensus 538 ~~~l~~L~~L~Ls~N-~l~~~~~~~l~~ 564 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLN-HIMTSKKQELQH 564 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCBCCSSCTTC
T ss_pred HhCCCCCCEEECCCC-cCCCCCHHHHHh
Confidence 458899999999887 455555555543
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.6e-26 Score=248.19 Aligned_cols=453 Identities=16% Similarity=0.134 Sum_probs=290.0
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 117 (620)
.++++++++.+..+|.... ++|++|++++|.+ ..++...+.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4899999999999887543 8999999999998 667665679999999999999999886 67899999999999999
Q ss_pred CCCCC-hhhhcCCCCCCEEecCCCCCCCCC--hhccCCCCCCEEeCCCCccccccchHHHhCCcCC--cEEEcCCCcc--
Q 007039 118 CELAD-IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFS-- 190 (620)
Q Consensus 118 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L--~~L~l~~~~~-- 190 (620)
|.+.. |.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... +..+++| ++|++++|.+
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccc
Confidence 99988 554 8999999999999998764 789999999999999987 44432 5556666 9999999877
Q ss_pred ccccccCCCCcchhhhcCCCC-CCEEEeecCCCCCC-CCcccc--cCceEEEEEeCCCC-C--CCCCccccccccccEEE
Q 007039 191 GWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEIL-PPDFVS--VELQRYKIRIGDGP-E--DEFDPLLVKSEASRLMM 263 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~-~~~~~~--~~L~~L~l~~~~~~-~--~~~~~~~~~~~~L~~L~ 263 (620)
.. .....+..+.. .-.++++.+..... +..... ++|+.+++...... . ....+.+...+.++.+.
T Consensus 184 ~~--------~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 184 KG--------GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp CS--------SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred cc--------cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 31 12234444431 11345555553332 222222 67777777543200 0 00011244567778888
Q ss_pred Eecccccccccc--hhHHHH--HhccccceecccccChhhhcccCCcCCCccccceEEeccCCCce-Eeeeccccccccc
Q 007039 264 LKGIKKVSILQE--NDGTKM--LLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL-HIVGSVRRVRCEV 338 (620)
Q Consensus 264 l~~~~~~~~i~~--~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~ 338 (620)
+..+ .+.. ..++.. ..++|++|++.++.....+...+. ....++|+.|.+.+...-. .+++. .......
T Consensus 256 L~~~----~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~~~p~~-~~~~~~~ 329 (562)
T 3a79_B 256 LQHI----ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVFLFSKE-ALYSVFA 329 (562)
T ss_dssp EEEE----EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCCSSCHH-HHHHHHH
T ss_pred ecCC----cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh-hcccccchheehhhcccceeecChh-hhhhhhc
Confidence 7762 2221 111111 124899999987764323322221 0012455555554432111 11100 0000111
Q ss_pred ccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCC
Q 007039 339 FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKP 418 (620)
Q Consensus 339 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 418 (620)
.++|+.|+++++. +..+.. .+.+++|++|++.++. ++...+ ..+.++++|++|+++++. ++.+...
T Consensus 330 ~~~L~~L~l~~n~-~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~----- 395 (562)
T 3a79_B 330 EMNIKMLSISDTP-FIHMVC-----PPSPSSFTFLNFTQNV-FTDSVF-QGCSTLKRLQTLILQRNG-LKNFFKV----- 395 (562)
T ss_dssp TCCCSEEEEESSC-CCCCCC-----CSSCCCCCEEECCSSC-CCTTTT-TTCCSCSSCCEEECCSSC-CCBTTHH-----
T ss_pred cCcceEEEccCCC-cccccC-----ccCCCCceEEECCCCc-cccchh-hhhcccCCCCEEECCCCC-cCCcccc-----
Confidence 2458888888865 222111 2568899999998863 444222 235678999999998853 4432200
Q ss_pred CCCccccccccCCCCccccccCccceEecCCcccccc-ccccCCccccccCCccEEEEecCCCcceecchhhhccc-Ccc
Q 007039 419 PTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKK-LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSL-GQL 496 (620)
Q Consensus 419 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L 496 (620)
+..+..+++|++|+++++ .+.. ++...+ ..+++|++|++++| .++.. .+..+ ++|
T Consensus 396 --------------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---~~l~~L~~L~l~~n-~l~~~----~~~~l~~~L 452 (562)
T 3a79_B 396 --------------ALMTKNMSSLETLDVSLN-SLNSHAYDRTC---AWAESILVLNLSSN-MLTGS----VFRCLPPKV 452 (562)
T ss_dssp --------------HHTTTTCTTCCEEECTTS-CCBSCCSSCCC---CCCTTCCEEECCSS-CCCGG----GGSSCCTTC
T ss_pred --------------hhhhcCCCCCCEEECCCC-cCCCccChhhh---cCcccCCEEECCCC-CCCcc----hhhhhcCcC
Confidence 012356789999999988 4544 544433 36789999999996 45433 22334 689
Q ss_pred cEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccc-cccCCCccEEEecc
Q 007039 497 QHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDE-KVRLPSLEVLHISE 575 (620)
Q Consensus 497 ~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~-~~~l~~L~~L~i~~ 575 (620)
+.|+++++ .++.+ +.+... +++|+.|+++++. ++ .+|.. +..+++|+.|++++
T Consensus 453 ~~L~L~~N-~l~~i--p~~~~~------l~~L~~L~L~~N~-l~----------------~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 453 KVLDLHNN-RIMSI--PKDVTH------LQALQELNVASNQ-LK----------------SVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp SEEECCSS-CCCCC--CTTTTS------SCCCSEEECCSSC-CC----------------CCCTTSTTTCTTCCCEECCS
T ss_pred CEEECCCC-cCccc--ChhhcC------CCCCCEEECCCCC-CC----------------CCCHHHHhcCCCCCEEEecC
Confidence 99999987 56654 333333 7889999988762 33 34444 66788999999988
Q ss_pred cc
Q 007039 576 AD 577 (620)
Q Consensus 576 C~ 577 (620)
++
T Consensus 507 N~ 508 (562)
T 3a79_B 507 NP 508 (562)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.2e-25 Score=236.97 Aligned_cols=343 Identities=18% Similarity=0.229 Sum_probs=253.0
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
.++++++|++.++.. ..+|. +..+++|++|++++|.+..+|. ++++++|++|++++|.+.....++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i--~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HhccccEEecCCCCC--ccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 467899999998877 55665 5789999999999999988887 889999999999999988733389999999999
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+|. +.++++|++|++++|. +..++. +.++++|+.|++.+ ... ....++++++|+.|+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~----------~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVT----------DLKPLANLTTLERLD 183 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCC----------CCGGGTTCTTCCEEE
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-ccc----------CchhhccCCCCCEEE
Confidence 99999888875 8899999999999987 677765 88999999999853 222 223478888899999
Q ss_pred eecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
++++....++. +..+++|+.|++++ +..
T Consensus 184 l~~n~l~~~~~-------------------------l~~l~~L~~L~l~~---------------------------n~l 211 (466)
T 1o6v_A 184 ISSNKVSDISV-------------------------LAKLTNLESLIATN---------------------------NQI 211 (466)
T ss_dssp CCSSCCCCCGG-------------------------GGGCTTCSEEECCS---------------------------SCC
T ss_pred CcCCcCCCChh-------------------------hccCCCCCEEEecC---------------------------Ccc
Confidence 88776543321 23334444444443 221
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEee
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD 376 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 376 (620)
. . ...++.+++|++|+++++. +..+ .....+++|+.|+++++. +..+.. ...+++|++|++.
T Consensus 212 ~-~----~~~~~~l~~L~~L~l~~n~-l~~~------~~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 212 S-D----ITPLGILTNLDELSLNGNQ-LKDI------GTLASLTNLTDLDLANNQ-ISNLAP-----LSGLTKLTELKLG 273 (466)
T ss_dssp C-C----CGGGGGCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC-CCCCGG-----GTTCTTCSEEECC
T ss_pred c-c----cccccccCCCCEEECCCCC-cccc------hhhhcCCCCCEEECCCCc-cccchh-----hhcCCCCCEEECC
Confidence 1 1 1113468899999999985 3322 145678999999999875 333322 4678999999999
Q ss_pred cCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccc
Q 007039 377 SCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKL 456 (620)
Q Consensus 377 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 456 (620)
+| .++..++ +..+++|++|++++|. +..+. ....+++|+.|++++| .+..+
T Consensus 274 ~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-----------------------~~~~l~~L~~L~L~~n-~l~~~ 324 (466)
T 1o6v_A 274 AN-QISNISP---LAGLTALTNLELNENQ-LEDIS-----------------------PISNLKNLTYLTLYFN-NISDI 324 (466)
T ss_dssp SS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCG-----------------------GGGGCTTCSEEECCSS-CCSCC
T ss_pred CC-ccCcccc---ccCCCccCeEEcCCCc-ccCch-----------------------hhcCCCCCCEEECcCC-cCCCc
Confidence 86 5555554 4689999999999864 33332 2467899999999999 55544
Q ss_pred cccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccC
Q 007039 457 WSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWL 536 (620)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 536 (620)
.. +..+++|++|++++| .++.+ ..+..+++|+.|++++|+ +.... + ... +++|+.|++.++
T Consensus 325 ~~-----~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~-~--~~~------l~~L~~L~l~~n 385 (466)
T 1o6v_A 325 SP-----VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLT-P--LAN------LTRITQLGLNDQ 385 (466)
T ss_dssp GG-----GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCG-G--GTT------CTTCCEEECCCE
T ss_pred hh-----hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccc-h--hhc------CCCCCEEeccCC
Confidence 32 347999999999997 77776 457889999999999986 44332 1 333 789999999887
Q ss_pred C
Q 007039 537 P 537 (620)
Q Consensus 537 ~ 537 (620)
+
T Consensus 386 ~ 386 (466)
T 1o6v_A 386 A 386 (466)
T ss_dssp E
T ss_pred c
Confidence 4
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.1e-25 Score=237.24 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=97.1
Q ss_pred EEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-CC-hhhhhcccCCcEEEccCC
Q 007039 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~~~~l~~L~~L~L~~~ 118 (620)
.++..++.+..+|. -.++|++|++++|.+ ..++...+.++++|++|++++|.+. .+ +..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 34455555555555 225666666666665 3333333466666666666666654 33 345666666666666666
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCC-CChh--ccCCCCCCEEeCCCCcccccc-chHHHhCCcCCcEEEcCCCcccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVI-APNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
.+.. |..++++++|++|++++|.++. +|.. +.++++|++|++++|. +..+ |...+.++++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 6654 4566666666666666666653 2333 6666666666666666 3333 33335666666666666665542
Q ss_pred ccccCCCCcchhhhcCC--CCCCEEEeecCCCCCCC
Q 007039 193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEILP 226 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~ 226 (620)
.. ...+.++ .+|+.|+++++....++
T Consensus 169 ~~--------~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 169 IC--------EEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp CC--------TTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred cC--------hhhhhccccccccccccccCcccccc
Confidence 11 1222222 45666666666554443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.5e-25 Score=234.32 Aligned_cols=163 Identities=21% Similarity=0.316 Sum_probs=104.8
Q ss_pred cchhhhhhccccCCcEEEEccCCCCcCCC-CcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-h
Q 007039 25 ADLEKKMEETIQKDPIAISLPHRDIQELP-ERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-P 101 (620)
Q Consensus 25 ~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 101 (620)
.+...+|. +++++++|++++|.+..++ ... ++++|++|++++|.. ...++...|.++++|++|++++|.+..+ |
T Consensus 20 ~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 20 RGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp SCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccCh
Confidence 34444443 4567777777777776552 222 677777777777765 3455555556777777777777776654 5
Q ss_pred hhhhcccCCcEEEccCCCCCC--hhh--hcCCCCCCEEecCCCCCCCC-Chh-ccCCCCCCEEeCCCCccccccchHHHh
Q 007039 102 SSLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL-PVE-IGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
..++++++|++|++++|.+.+ +.. ++++++|++|++++|.+..+ |.. ++++++|++|++++|. +..+++..+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 175 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLL 175 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhh
Confidence 667777777777777777665 333 67777777777777777655 433 6677777777777776 4444433355
Q ss_pred CC--cCCcEEEcCCCccc
Q 007039 176 KL--SQLEELYMGNGFSG 191 (620)
Q Consensus 176 ~l--~~L~~L~l~~~~~~ 191 (620)
.+ .+|+.|++.++.+.
T Consensus 176 ~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp GGTTCEEEEEECTTCBCT
T ss_pred ccccccccccccccCccc
Confidence 44 56777777766654
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.2e-25 Score=224.71 Aligned_cols=301 Identities=17% Similarity=0.167 Sum_probs=212.2
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++++|+++++.+..++....+++|++|++++|.. ..++. +..+++|++|++++|.+..++ .+.++++|++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI--TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCcc--ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 677899999999888887766888999999998877 55655 578899999999999888876 4888899999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.+...+..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 9988887444888899999999988444334458888999999999887 666665 788889999999888765
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~ 274 (620)
.+..+..+++|+.|+++++....++. +.. ++|+.|++..+..... +.+..
T Consensus 191 ------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~---~~~~~------------------- 241 (347)
T 4fmz_A 191 ------DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL---SPLAN------------------- 241 (347)
T ss_dssp ------CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC---GGGTT-------------------
T ss_pred ------ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC---cchhc-------------------
Confidence 22337788888888888887665544 222 5666666544332211 11223
Q ss_pred chhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCch
Q 007039 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE 354 (620)
Q Consensus 275 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 354 (620)
+++|+.|++.++... .+ +.+..+++|++|+++++. +..+ .....+++|+.|+++++. +.
T Consensus 242 --------l~~L~~L~l~~n~l~-~~----~~~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 242 --------LSQLTWLEIGTNQIS-DI----NAVKDLTKLKMLNVGSNQ-ISDI------SVLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp --------CTTCCEEECCSSCCC-CC----GGGTTCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC-CC
T ss_pred --------CCCCCEEECCCCccC-CC----hhHhcCCCcCEEEccCCc-cCCC------hhhcCCCCCCEEECcCCc-CC
Confidence 345555555544221 11 224477888888888873 3322 145677888888888875 33
Q ss_pred hhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecC
Q 007039 355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (620)
Q Consensus 355 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 405 (620)
...... ...+++|++|++.+|+ ++..++ +..+++|++|++++|+
T Consensus 301 ~~~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 NEDMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CcChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 332221 3568888999998875 566554 4678888888888764
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.2e-25 Score=235.03 Aligned_cols=402 Identities=16% Similarity=0.109 Sum_probs=186.5
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCC-------------CcEEEcCCCCCCCCh
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEG-------------LKVLQFPGIGSSSLP 101 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~-------------Lr~L~l~~~~~~~lp 101 (620)
...+|+++++++.+..+|+.. ++++|++|++++|.+ .+.+|..+ +++++ +++|++++|.+..+|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~-~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW-ERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH-HHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcc-cccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 345666666666666666544 666666666666654 33444443 34443 366666666655555
Q ss_pred hhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCC
Q 007039 102 SSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L 180 (620)
.. .++|++|++++|.+.. |. .+.+|++|++++|.++.+|.. .++|++|++++|. +..+|. ++++++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCC
Confidence 42 2456666666665555 32 125566666666655555432 1456666666655 444552 5566666
Q ss_pred cEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCcccccccccc
Q 007039 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASR 260 (620)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (620)
++|++++|.+... + . ...+|++|++++|....++. +..+++|+
T Consensus 156 ~~L~l~~N~l~~l-p--------~---~~~~L~~L~L~~n~l~~l~~-------------------------~~~l~~L~ 198 (454)
T 1jl5_A 156 KIIDVDNNSLKKL-P--------D---LPPSLEFIAAGNNQLEELPE-------------------------LQNLPFLT 198 (454)
T ss_dssp CEEECCSSCCSCC-C--------C---CCTTCCEEECCSSCCSSCCC-------------------------CTTCTTCC
T ss_pred CEEECCCCcCccc-C--------C---CcccccEEECcCCcCCcCcc-------------------------ccCCCCCC
Confidence 6666655554310 0 0 11255555555554433321 22333333
Q ss_pred EEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeeccccccccccc
Q 007039 261 LMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFP 340 (620)
Q Consensus 261 ~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 340 (620)
.|++++ +... . ++ ...++|++|+++++. +..++ ....++
T Consensus 199 ~L~l~~---------------------------N~l~-~----l~--~~~~~L~~L~l~~n~-l~~lp------~~~~l~ 237 (454)
T 1jl5_A 199 AIYADN---------------------------NSLK-K----LP--DLPLSLESIVAGNNI-LEELP------ELQNLP 237 (454)
T ss_dssp EEECCS---------------------------SCCS-S----CC--CCCTTCCEEECCSSC-CSSCC------CCTTCT
T ss_pred EEECCC---------------------------CcCC-c----CC--CCcCcccEEECcCCc-CCccc------ccCCCC
Confidence 333333 2211 1 11 123589999998884 33332 356788
Q ss_pred ccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCC
Q 007039 341 LLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPT 420 (620)
Q Consensus 341 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 420 (620)
+|+.|+++++. ++.++ ..+++|+.|++.+| .++.++. .+++|++|++++|. ++.++
T Consensus 238 ~L~~L~l~~N~-l~~l~-------~~~~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N~-l~~l~--------- 293 (454)
T 1jl5_A 238 FLTTIYADNNL-LKTLP-------DLPPSLEALNVRDN-YLTDLPE-----LPQSLTFLDVSENI-FSGLS--------- 293 (454)
T ss_dssp TCCEEECCSSC-CSSCC-------SCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSEES---------
T ss_pred CCCEEECCCCc-CCccc-------ccccccCEEECCCC-cccccCc-----ccCcCCEEECcCCc-cCccc---------
Confidence 88888888853 44332 23578899999886 4555543 24788888888754 33332
Q ss_pred CccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEE
Q 007039 421 TQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLE 500 (620)
Q Consensus 421 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 500 (620)
...++|+.|+++++ .+..++. ..++|++|+++++ +++.++ . .+++|++|+
T Consensus 294 ----------------~~~~~L~~L~l~~N-~l~~i~~-------~~~~L~~L~Ls~N-~l~~lp--~---~~~~L~~L~ 343 (454)
T 1jl5_A 294 ----------------ELPPNLYYLNASSN-EIRSLCD-------LPPSLEELNVSNN-KLIELP--A---LPPRLERLI 343 (454)
T ss_dssp ----------------CCCTTCCEEECCSS-CCSEECC-------CCTTCCEEECCSS-CCSCCC--C---CCTTCCEEE
T ss_pred ----------------CcCCcCCEEECcCC-cCCcccC-------CcCcCCEEECCCC-cccccc--c---cCCcCCEEE
Confidence 11368999999988 5554321 1258999999984 677662 1 368999999
Q ss_pred EcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccc---cCCCCccccccccccCCCccEEEecccc
Q 007039 501 IRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVI---HTEMQPQSLFDEKVRLPSLEVLHISEAD 577 (620)
Q Consensus 501 i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~---~~~~~l~~l~~~~~~l~~L~~L~i~~C~ 577 (620)
+++| .++.+. . .+++|+.|++++++ ++.++..+..+ ........+|. .+++|++|+++++
T Consensus 344 L~~N-~l~~lp--~---------~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~---~~~~L~~L~ls~N- 406 (454)
T 1jl5_A 344 ASFN-HLAEVP--E---------LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPE---LPQNLKQLHVETN- 406 (454)
T ss_dssp CCSS-CCSCCC--C---------CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCC-cccccc--c---------hhhhccEEECCCCC-CCcCCCChHHHHhhhhccccccccc---ccCcCCEEECCCC-
Confidence 9986 455442 2 25789999998863 44433222111 11112222222 2378899999888
Q ss_pred chhhhccccccCCcccCccEEEeccCcCc
Q 007039 578 KLRKIWHHQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 578 ~L~~l~~~~~~~~~~~sL~~L~i~~C~~l 606 (620)
.++.++. +| ++++.|.+.+|.--
T Consensus 407 ~l~~~~~--iP----~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 407 PLREFPD--IP----ESVEDLRMNSERVV 429 (454)
T ss_dssp -----------------------------
T ss_pred cCCcccc--ch----hhHhheeCcCcccC
Confidence 4665433 33 67888888777533
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.8e-24 Score=226.06 Aligned_cols=177 Identities=20% Similarity=0.180 Sum_probs=138.0
Q ss_pred cccCCcEEEEccCCCCc-CCCCcC-CCCC-------------ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC
Q 007039 34 TIQKDPIAISLPHRDIQ-ELPERL-QCPN-------------LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS 98 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~-~l~~~~-~~~~-------------Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 98 (620)
.-.++++.|+++++.+. .+|... ++++ ++.|++++|.. ..+|. ..++|++|++++|.+.
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l--~~lp~----~~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL--SSLPE----LPPHLESLVASCNSLT 104 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC--SCCCS----CCTTCSEEECCSSCCS
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc--ccCCC----CcCCCCEEEccCCcCC
Confidence 44778888999988874 566554 5665 49999999987 55665 2579999999999999
Q ss_pred CChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCc
Q 007039 99 SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (620)
Q Consensus 99 ~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~ 178 (620)
.+|.. ..+|++|++++|.+...+.+ .++|++|++++|.++.+| .++++++|++|++++|. +..+|.. ..
T Consensus 105 ~lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~----~~ 173 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL----PP 173 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCC----CT
T ss_pred ccccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCC----cc
Confidence 99864 37899999999998773222 279999999999999999 69999999999999998 6777753 35
Q ss_pred CCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEE
Q 007039 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
+|++|++++|.+.. +..++++++|+.|++++|....+|... ++|+.|++
T Consensus 174 ~L~~L~L~~n~l~~----------l~~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l 222 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE----------LPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVA 222 (454)
T ss_dssp TCCEEECCSSCCSS----------CCCCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEEC
T ss_pred cccEEECcCCcCCc----------CccccCCCCCCEEECCCCcCCcCCCCc--CcccEEEC
Confidence 99999999998761 235889999999999999877655421 34455544
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=8.7e-24 Score=221.07 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=110.8
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++++|+++++.+..+|....+++|++|++++|.+ ..++ +..+++|++|++++|.+..++ ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 566777777777776666544777777777777766 3343 456777777777777777664 667777777777
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+...+ ++.+++|++|++++|.++.++ ++++++|++|++++|..++.++ +..+++|++|++++|.+..
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence 777766632 667777777777777777664 6677777777777775555553 5667777777777776541
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEI 224 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (620)
+. ++.+++|+.|++++|....
T Consensus 185 -------l~-l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 185 -------LD-VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp -------CC-CTTCTTCCEEECCSSCCSC
T ss_pred -------ec-cccCCCCCEEECcCCcCCe
Confidence 11 5566677777777665543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.6e-23 Score=219.11 Aligned_cols=181 Identities=21% Similarity=0.172 Sum_probs=150.4
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
++++|++|++++|.+ ..+| . +..+++|++|++++|.+..+| ++.+++|++|++++|.+...+ ++++++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l--~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSI--TDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCC--CCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCc--ccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEE
Confidence 789999999999988 5566 3 589999999999999999987 889999999999999988843 88999999999
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+| ++++++|++|++++|. +..++ ++++++|++|++++|.... .+ .++.+++|+.|+
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~---------~~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKIT---------KL-DVTPQTQLTTLD 176 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCC---------CC-CCTTCTTCCEEE
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccc---------cc-ccccCCcCCEEE
Confidence 9999999986 8999999999999998 66675 7899999999999985441 11 477889999999
Q ss_pred eecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 217 IEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 217 l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
+++|....++ +.. ++|+.|.+..+..... .+..+++|+.|++++
T Consensus 177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSS 221 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCS
T ss_pred CCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcC
Confidence 9999988876 344 8999999976654332 145556666666665
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.7e-23 Score=221.60 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=58.2
Q ss_pred CCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecC
Q 007039 369 NLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELV 448 (620)
Q Consensus 369 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 448 (620)
+|++|++.+| .++.++. ..+.++++|++|+++++. +..+.. ..+..+++|++|+++
T Consensus 225 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~---------------------~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 225 NLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEG---------------------SMLHELLRLQEIQLV 280 (477)
T ss_dssp CCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECT---------------------TSCTTCTTCCEEECC
T ss_pred cccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccCh---------------------hhccccccCCEEECC
Confidence 5566666554 3444432 234566666666666643 333321 123445667777776
Q ss_pred CccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccc
Q 007039 449 SLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 449 ~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
++ .+..+....+ ..+++|++|+++++ .++.+ +...+..+++|++|++.+++
T Consensus 281 ~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 281 GG-QLAVVEPYAF---RGLNYLRVLNVSGN-QLTTL-EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SS-CCSEECTTTB---TTCTTCCEEECCSS-CCSCC-CGGGBSCGGGCCEEECCSSC
T ss_pred CC-ccceECHHHh---cCcccCCEEECCCC-cCcee-CHhHcCCCcccCEEEccCCC
Confidence 66 4444433222 25667777777774 56665 33455666777777776654
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-23 Score=216.43 Aligned_cols=304 Identities=13% Similarity=0.133 Sum_probs=217.7
Q ss_pred CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCC
Q 007039 56 LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKL 132 (620)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L 132 (620)
..++++++|++.++.. ..+|..++..+++|++|++++|.+..++ ..++++++|++|++++|.+.. +..++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3678999999998887 7788888889999999999999988765 478899999999999999887 4678999999
Q ss_pred CEEecCCCCCCCCChhc-cCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCC
Q 007039 133 EILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE 211 (620)
Q Consensus 133 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 211 (620)
++|++++|.++.+|..+ +++++|++|++++|. +..+++..+.++++|++|++++|.+.. ..++.+++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~l~~ 187 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPS 187 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-----------CCGGGCTT
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-----------cccccccc
Confidence 99999999999988774 889999999999987 667766668899999999999887751 13567788
Q ss_pred CCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceec
Q 007039 212 LTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL 291 (620)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l 291 (620)
|+.|+++++....++. ...|+.|++..+...... ... .++|+.|++
T Consensus 188 L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~~~----~~~---------------------------~~~L~~L~l 233 (390)
T 3o6n_A 188 LFHANVSYNLLSTLAI---PIAVEELDASHNSINVVR----GPV---------------------------NVELTILKL 233 (390)
T ss_dssp CSEEECCSSCCSEEEC---CSSCSEEECCSSCCCEEE----CCC---------------------------CSSCCEEEC
T ss_pred cceeecccccccccCC---CCcceEEECCCCeeeecc----ccc---------------------------cccccEEEC
Confidence 9999998876543321 145555555333211110 011 245555655
Q ss_pred ccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCc
Q 007039 292 ETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR 371 (620)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 371 (620)
.++.... . +.+..+++|++|+++++. +..+.. .....+++|+.|+++++ .++.++.. ...+++|+
T Consensus 234 ~~n~l~~-~----~~l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~ 298 (390)
T 3o6n_A 234 QHNNLTD-T----AWLLNYPGLVEVDLSYNE-LEKIMY----HPFVKMQRLERLYISNN-RLVALNLY----GQPIPTLK 298 (390)
T ss_dssp CSSCCCC-C----GGGGGCTTCSEEECCSSC-CCEEES----GGGTTCSSCCEEECCSS-CCCEEECS----SSCCTTCC
T ss_pred CCCCCcc-c----HHHcCCCCccEEECCCCc-CCCcCh----hHccccccCCEEECCCC-cCcccCcc----cCCCCCCC
Confidence 5543221 1 124577888999988884 332211 14566788888888885 35555433 45689999
Q ss_pred EEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCc
Q 007039 372 IINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSL 450 (620)
Q Consensus 372 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 450 (620)
+|++.+| .++.++. .+..+++|++|+++++. +..+. ...+++|+.|+++++
T Consensus 299 ~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~------------------------~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 299 VLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK------------------------LSTHHTLKNLTLSHN 349 (390)
T ss_dssp EEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC------------------------CCTTCCCSEEECCSS
T ss_pred EEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC------------------------chhhccCCEEEcCCC
Confidence 9999987 5666654 36789999999999865 33222 244677778887776
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.6e-23 Score=212.21 Aligned_cols=282 Identities=15% Similarity=0.152 Sum_probs=213.4
Q ss_pred hhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 31 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
+.....+++++|++++|.+..++...++++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 33455889999999999999888866999999999999987 55653 6899999999999999999987 8899999
Q ss_pred cEEEccCCCC-CChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc
Q 007039 111 QTLCLDWCEL-ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (620)
Q Consensus 111 ~~L~L~~~~~-~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 189 (620)
++|++++|.. ..+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|++.++.
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCC
Confidence 9999999974 447779999999999999999998875 8999999999999998 777776 8999999999999988
Q ss_pred cccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccc
Q 007039 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK 268 (620)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (620)
+. ....++.+++|++|++++|....++. +.. ++|+.|++..+..... +.+..+++|+.|+++++
T Consensus 211 l~----------~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n- 275 (347)
T 4fmz_A 211 IT----------DITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSN- 275 (347)
T ss_dssp CC----------CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSS-
T ss_pred CC----------CCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCC-
Confidence 76 12337889999999999999887776 344 8999999976543332 23455556666666552
Q ss_pred ccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 269 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
.+. .+ +.+..+++|++|++++|.-.. . .......+++|+.|+++
T Consensus 276 ---~l~------------------------~~----~~~~~l~~L~~L~L~~n~l~~-~----~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 276 ---QIS------------------------DI----SVLNNLSQLNSLFLNNNQLGN-E----DMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp ---CCC------------------------CC----GGGGGCTTCSEEECCSSCCCG-G----GHHHHHTCTTCSEEECC
T ss_pred ---ccC------------------------CC----hhhcCCCCCCEEECcCCcCCC-c----ChhHhhccccCCEEEcc
Confidence 111 11 113356677777777764211 1 11133456777777777
Q ss_pred cccCchhhhccCCCCCCcCCCCcEEEeecC
Q 007039 349 FLTNLETICYSQLREDQSFSNLRIINVDSC 378 (620)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 378 (620)
+++ +..++. ...+++|++|++.+|
T Consensus 320 ~n~-l~~~~~-----~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 320 QNH-ITDIRP-----LASLSKMDSADFANQ 343 (347)
T ss_dssp SSS-CCCCGG-----GGGCTTCSEESSSCC
T ss_pred CCc-cccccC-----hhhhhccceeehhhh
Confidence 765 333322 345777888877775
No 37
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2e-25 Score=243.31 Aligned_cols=384 Identities=15% Similarity=0.049 Sum_probs=188.4
Q ss_pred CCCCccEEEcccCCCCC--ccc-----------chHHHhcCCCCcEEEcCCCCCCC-Chhhhhc-cc-CCcEEEccCCC-
Q 007039 57 QCPNLQLFLLYTEGNGP--MQV-----------SDHFFEGMEGLKVLQFPGIGSSS-LPSSLGR-LI-NLQTLCLDWCE- 119 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~--~~~-----------~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~-l~-~L~~L~L~~~~- 119 (620)
.+++|++|++.++.... ..+ ...+...+++|++|+++++.+.. .+..+.. ++ +|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 67778888887653200 001 12233467788888888776643 2344444 33 38888887776
Q ss_pred CCC--h-hhhcCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCcccc-----ccchHHHhCCcCCcEEEcC
Q 007039 120 LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLE-----VIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 120 ~~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~-----~~p~~~l~~l~~L~~L~l~ 186 (620)
+.. . ..+.++++|++|++++|.+.. ++.....+++|++|+++++. +. .++. .+.++++|++|++.
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~-~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLET-IARNCRSLVSVKVG 228 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHH-HHHHCTTCCEEECS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHH-HHhhCCCCcEEecc
Confidence 332 2 334467788888888876542 33344567778888887766 33 2222 25567778888877
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
++.+. .....++++++|++|+++.+....... .....+..+++|+.+.+..
T Consensus 229 ~~~~~---------~l~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 229 DFEIL---------ELVGFFKAAANLEEFCGGSLNEDIGMP--------------------EKYMNLVFPRKLCRLGLSY 279 (592)
T ss_dssp SCBGG---------GGHHHHHHCTTCCEEEECBCCCCTTCT--------------------TSSSCCCCCTTCCEEEETT
T ss_pred CccHH---------HHHHHHhhhhHHHhhcccccccccchH--------------------HHHHHhhccccccccCccc
Confidence 76554 233556677777777776532210000 0011144556777777765
Q ss_pred ccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhc
Q 007039 267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS 346 (620)
Q Consensus 267 ~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 346 (620)
. ...........+++|++|++.++......... .+..+++|++|++.++-. +.........+++|++|+
T Consensus 280 ~----~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~--~~~~~~~L~~L~L~~~~~-----~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 280 M----GPNEMPILFPFAAQIRKLDLLYALLETEDHCT--LIQKCPNLEVLETRNVIG-----DRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp C----CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH--HHTTCTTCCEEEEEGGGH-----HHHHHHHHHHCTTCCEEE
T ss_pred c----chhHHHHHHhhcCCCcEEecCCCcCCHHHHHH--HHHhCcCCCEEeccCccC-----HHHHHHHHHhCCCCCEEE
Confidence 2 11111122223556677776665511111100 023566677766663310 111111223455666666
Q ss_pred ccc----------ccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEe---cCCccccccc
Q 007039 347 LMF----------LTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED---CDDLKMIIGP 413 (620)
Q Consensus 347 l~~----------~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~---c~~l~~~~~~ 413 (620)
+.+ |..+.......+ ...+++|++|.+ +|..++.........++++|++|++.+ |+.++..+.+
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l--~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIAL--AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHH--HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred eecCccccccccccCccCHHHHHHH--HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 663 444443221111 123566666666 444554432222223356666666653 2333322100
Q ss_pred CCCCCCCCccccccccCCCCccccccCccceEecCCccc-cccccccCCcc-ccccCCccEEEEecCCCcceecchhhhc
Q 007039 414 DMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTN-IKKLWSDQFQG-IYCCQNLTKVTVWSCHRLKYLFSYSMVN 491 (620)
Q Consensus 414 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~-~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 491 (620)
. + .......+++|+.|++++|.+ +.. ..... ...+++|++|++++| .+++......+.
T Consensus 426 ~--------~--------~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~ 485 (592)
T 3ogk_B 426 N--------G--------VRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR 485 (592)
T ss_dssp H--------H--------HHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT
T ss_pred H--------H--------HHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHHhCccceEeeccCC-CCCHHHHHHHHh
Confidence 0 0 000123355666666655443 111 00000 013555666666654 344332233445
Q ss_pred ccCcccEEEEcccc
Q 007039 492 SLGQLQHLEIRNCR 505 (620)
Q Consensus 492 ~l~~L~~L~i~~C~ 505 (620)
.+++|++|+|++|+
T Consensus 486 ~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC 499 (592)
T ss_dssp CCTTCCEEEEESCC
T ss_pred cCcccCeeeccCCC
Confidence 55666666666665
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.1e-23 Score=222.10 Aligned_cols=304 Identities=14% Similarity=0.154 Sum_probs=216.5
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
.+++++.+++.++.. ..+|..++..+++|++|++++|.+..++ ..|+.+++|++|++++|.+.. +..|+++++|+
T Consensus 49 ~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 678999999999887 7888888899999999999999998765 489999999999999999887 46789999999
Q ss_pred EEecCCCCCCCCChhc-cCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCC
Q 007039 134 ILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (620)
Q Consensus 134 ~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (620)
+|++++|.+..+|..+ +++++|++|++++|. +..+++..++++++|++|++++|.+.. ..++.+++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~l~~L 194 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPSL 194 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-----------CCGGGCTTC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-----------cChhhhhhh
Confidence 9999999999998774 899999999999998 667776668899999999999987761 135567778
Q ss_pred CEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecc
Q 007039 213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE 292 (620)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~ 292 (620)
+.|++++|....++ ..++++.|++++
T Consensus 195 ~~L~l~~n~l~~l~----------------------------~~~~L~~L~ls~-------------------------- 220 (597)
T 3oja_B 195 FHANVSYNLLSTLA----------------------------IPIAVEELDASH-------------------------- 220 (597)
T ss_dssp SEEECCSSCCSEEE----------------------------CCTTCSEEECCS--------------------------
T ss_pred hhhhcccCcccccc----------------------------CCchhheeeccC--------------------------
Confidence 88888766433211 111223333322
Q ss_pred cccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcE
Q 007039 293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (620)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 372 (620)
+.. ..+. ....++|+.|+++++. +...+ ....+++|+.
T Consensus 221 -n~l-~~~~-----~~~~~~L~~L~L~~n~------------------------------l~~~~-----~l~~l~~L~~ 258 (597)
T 3oja_B 221 -NSI-NVVR-----GPVNVELTILKLQHNN------------------------------LTDTA-----WLLNYPGLVE 258 (597)
T ss_dssp -SCC-CEEE-----CSCCSCCCEEECCSSC------------------------------CCCCG-----GGGGCTTCSE
T ss_pred -Ccc-cccc-----cccCCCCCEEECCCCC------------------------------CCCCh-----hhccCCCCCE
Confidence 111 0000 1122456666666553 11110 1456788889
Q ss_pred EEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccc
Q 007039 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTN 452 (620)
Q Consensus 373 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 452 (620)
|++.++ .++..++ ..+.++++|++|+++++ .+..++ .....+|+|+.|++++| .
T Consensus 259 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~----------------------~~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 259 VDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RLVALN----------------------LYGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp EECCSS-CCCEEES-GGGTTCSSCCEEECTTS-CCCEEE----------------------CSSSCCTTCCEEECCSS-C
T ss_pred EECCCC-ccCCCCH-HHhcCccCCCEEECCCC-CCCCCC----------------------cccccCCCCcEEECCCC-C
Confidence 998886 4555533 24577889999999885 344443 12245788999999888 5
Q ss_pred cccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccc
Q 007039 453 IKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 453 l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
+..++.. +..+++|++|++++| .++.++ +..+++|+.|++++++
T Consensus 313 l~~i~~~----~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 LLHVERN----QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCGGG----HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CCccCcc----cccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 5555433 346888999999885 566652 5567888889888876
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.4e-23 Score=213.28 Aligned_cols=304 Identities=15% Similarity=0.113 Sum_probs=200.4
Q ss_pred cCCCCcEEEcCCCCCCCChhh-hhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEE
Q 007039 83 GMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLL 158 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 158 (620)
.+.++++|+++++.+..+|.. +.++++|++|++++|.+.+ +..++.+++|++|++++|.+..+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999865 6899999999999999987 4689999999999999999998754 58999999999
Q ss_pred eCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEE
Q 007039 159 DLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYK 238 (620)
Q Consensus 159 ~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 238 (620)
++++|. +..+|..++.++++|++|++++|.+.. .....++++++|++|++++|....++.
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~----------- 182 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL----------- 182 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCCG-----------
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc--------cChhhccCCCCCCEEECCCCcCCcccc-----------
Confidence 999998 789998867999999999999998762 223457889999999999887654431
Q ss_pred EEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEe
Q 007039 239 IRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLV 318 (620)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l 318 (620)
...++++.+++++ ... .. +...++|++|++
T Consensus 183 ---------------~~l~~L~~L~l~~---------------------------n~l-----~~---~~~~~~L~~L~l 212 (390)
T 3o6n_A 183 ---------------SLIPSLFHANVSY---------------------------NLL-----ST---LAIPIAVEELDA 212 (390)
T ss_dssp ---------------GGCTTCSEEECCS---------------------------SCC-----SE---EECCSSCSEEEC
T ss_pred ---------------ccccccceeeccc---------------------------ccc-----cc---cCCCCcceEEEC
Confidence 2223333333333 100 00 112345666666
Q ss_pred ccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccce
Q 007039 319 TDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK 398 (620)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 398 (620)
+++. +..+ ....+++|+.|++.++. +...+ ....+++|++|++.++ .++..++ ..+.++++|++
T Consensus 213 ~~n~-l~~~-------~~~~~~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~ 276 (390)
T 3o6n_A 213 SHNS-INVV-------RGPVNVELTILKLQHNN-LTDTA-----WLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLER 276 (390)
T ss_dssp CSSC-CCEE-------ECCCCSSCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCE
T ss_pred CCCe-eeec-------cccccccccEEECCCCC-CcccH-----HHcCCCCccEEECCCC-cCCCcCh-hHccccccCCE
Confidence 6653 2222 12234555555555543 22221 1445677777777765 3444432 23456677777
Q ss_pred EEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecC
Q 007039 399 VKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSC 478 (620)
Q Consensus 399 L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C 478 (620)
|+++++. +..++. ....+++|++|++++| .+..++.. +..+++|++|+++++
T Consensus 277 L~L~~n~-l~~~~~----------------------~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 277 LYISNNR-LVALNL----------------------YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLYLDHN 328 (390)
T ss_dssp EECCSSC-CCEEEC----------------------SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEECCSS
T ss_pred EECCCCc-CcccCc----------------------ccCCCCCCCEEECCCC-cceecCcc----ccccCcCCEEECCCC
Confidence 7776643 333331 1234667777777776 45444322 234667777777774
Q ss_pred CCcceecchhhhcccCcccEEEEcccc
Q 007039 479 HRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 479 ~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
.++.++ +..+++|+.|++++++
T Consensus 329 -~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 -SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCCC----CCTTCCCSEEECCSSC
T ss_pred -ccceeC----chhhccCCEEEcCCCC
Confidence 455551 4456677777777654
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=215.67 Aligned_cols=177 Identities=20% Similarity=0.183 Sum_probs=96.0
Q ss_pred cccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L 110 (620)
.++.++++|++++|.+..++. ..++++|++|++++|.+ ..++...|.++++|++|++++|.+..+|. .+.++++|
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 345556666666666655432 12556666666666555 33333334556666666666666655553 34556666
Q ss_pred cEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
++|++++|.+.. +..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+.++++|+.|++.+
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEES
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCC
Confidence 666666666554 34555666666666666655543 3345556666666666655 4555555455666666666655
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
+.+... ....+.++++|+.|+++++.
T Consensus 186 n~i~~~--------~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 186 LNINAI--------RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CCCCEE--------CTTCSCSCTTCCEEEEECCT
T ss_pred CcCcEe--------ChhhcccCcccceeeCCCCc
Confidence 554311 11334555556666665543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.2e-22 Score=217.37 Aligned_cols=301 Identities=16% Similarity=0.149 Sum_probs=221.5
Q ss_pred cCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcE
Q 007039 36 QKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQT 112 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~ 112 (620)
..+++.+++.++.+..+|... ++++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 578899999999999888754 799999999999998 56665557899999999999999988764 6799999999
Q ss_pred EEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc
Q 007039 113 LCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (620)
Q Consensus 113 L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 189 (620)
|++++|.+.. | ..|+++++|++|++++|.+..++. .++++++|++|++++|. +..++ ++.+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCc
Confidence 9999999988 5 446999999999999999987754 69999999999999998 67665 5778999999999887
Q ss_pred cccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccc
Q 007039 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
+. .+....+|+.|++++|....++... .++|+.|++++
T Consensus 204 l~-------------~l~~~~~L~~L~ls~n~l~~~~~~~--------------------------~~~L~~L~L~~--- 241 (597)
T 3oja_B 204 LS-------------TLAIPIAVEELDASHNSINVVRGPV--------------------------NVELTILKLQH--- 241 (597)
T ss_dssp CS-------------EEECCTTCSEEECCSSCCCEEECSC--------------------------CSCCCEEECCS---
T ss_pred cc-------------cccCCchhheeeccCCccccccccc--------------------------CCCCCEEECCC---
Confidence 65 3455678999999988765444321 12344444443
Q ss_pred cccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcccc
Q 007039 270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMF 349 (620)
Q Consensus 270 ~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (620)
..+.. . ..+..+++|++|+++++.- ..++. .....+++|+.|++++
T Consensus 242 -n~l~~------------------------~----~~l~~l~~L~~L~Ls~N~l-~~~~~----~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 242 -NNLTD------------------------T----AWLLNYPGLVEVDLSYNEL-EKIMY----HPFVKMQRLERLYISN 287 (597)
T ss_dssp -SCCCC------------------------C----GGGGGCTTCSEEECCSSCC-CEEES----GGGTTCSSCCEEECTT
T ss_pred -CCCCC------------------------C----hhhccCCCCCEEECCCCcc-CCCCH----HHhcCccCCCEEECCC
Confidence 11110 0 1133566677777766642 22211 1345566777777766
Q ss_pred ccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcccccccc
Q 007039 350 LTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINA 429 (620)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~ 429 (620)
+ .+..++.. ...+++|+.|++.+| .++.+|. .+..+++|++|++++|.- ..+.
T Consensus 288 N-~l~~l~~~----~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~l-~~~~------------------ 340 (597)
T 3oja_B 288 N-RLVALNLY----GQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNSI-VTLK------------------ 340 (597)
T ss_dssp S-CCCEEECS----SSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSCC-CCCC------------------
T ss_pred C-CCCCCCcc----cccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCCC-CCcC------------------
Confidence 4 34444332 456889999999886 4556654 357899999999998753 3222
Q ss_pred CCCCccccccCccceEecCCcc
Q 007039 430 EDDPVHQVTFPRLEELELVSLT 451 (620)
Q Consensus 430 ~~~~~~~~~l~~L~~L~l~~~~ 451 (620)
...+++|+.|++++++
T Consensus 341 ------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 ------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------CCTTCCCSEEECCSSC
T ss_pred ------hhhcCCCCEEEeeCCC
Confidence 3557899999998874
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=5.1e-24 Score=232.27 Aligned_cols=442 Identities=12% Similarity=0.033 Sum_probs=232.8
Q ss_pred ccchHHHhcCCCCcEEEcCCCCC----CCC------------hhhhhcccCCcEEEccCCCCCC--hhhhcCC--CCCCE
Q 007039 75 QVSDHFFEGMEGLKVLQFPGIGS----SSL------------PSSLGRLINLQTLCLDWCELAD--IAAIGQL--KKLEI 134 (620)
Q Consensus 75 ~~~~~~~~~l~~Lr~L~l~~~~~----~~l------------p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L--~~L~~ 134 (620)
..+..++..+++|++|+++++.. ..+ +....++++|++|++++|.+.+ +..+..+ .+|++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 34666778899999999987542 111 2222378889999999888775 4556553 45999
Q ss_pred EecCCCC-CC--CCChhccCCCCCCEEeCCCCccccccc----hHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhc
Q 007039 135 LSLAYSN-IN--QLPVEIGQLTRLQLLDLSNCWWLEVIA----PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE 207 (620)
Q Consensus 135 L~l~~~~-l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 207 (620)
|++++|. +. .++..+.++++|++|++++|. +.... ......+++|++|+++++.+... ........+.
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~~~~ 217 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI----SPKDLETIAR 217 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSC----CHHHHHHHHH
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCcc----CHHHHHHHHh
Confidence 9998884 33 344445578889999998886 33322 12256788889998887766411 0112334456
Q ss_pred CCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhcccc
Q 007039 208 RLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287 (620)
Q Consensus 208 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~ 287 (620)
++++|++|+++++....++.. +...++|+++.+..................+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGF------------------------FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHH------------------------HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred hCCCCcEEeccCccHHHHHHH------------------------HhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 778888888887655444432 22334444444433110000000000001234566
Q ss_pred ceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcC
Q 007039 288 DLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSF 367 (620)
Q Consensus 288 ~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 367 (620)
.|.+.+... ..+... +..+++|++|++++|. +. +.........+++|+.|++.++ +.+.....+ ...+
T Consensus 274 ~L~l~~~~~-~~l~~~---~~~~~~L~~L~Ls~~~-l~---~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~--~~~~ 341 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPIL---FPFAAQIRKLDLLYAL-LE---TEDHCTLIQKCPNLEVLETRNV--IGDRGLEVL--AQYC 341 (592)
T ss_dssp EEEETTCCT-TTGGGG---GGGGGGCCEEEETTCC-CC---HHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH--HHHC
T ss_pred ccCccccch-hHHHHH---HhhcCCCcEEecCCCc-CC---HHHHHHHHHhCcCCCEEeccCc--cCHHHHHHH--HHhC
Confidence 665554321 111111 2356677777777765 21 1111112356677777777632 222111110 2346
Q ss_pred CCCcEEEeec----------CCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCcccc
Q 007039 368 SNLRIINVDS----------CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQV 437 (620)
Q Consensus 368 ~~L~~L~l~~----------c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 437 (620)
++|++|++.+ |..++.........++++|++|.+ +|..+...... ....
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~--------------------~l~~ 400 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE--------------------SIGT 400 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH--------------------HHHH
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH--------------------HHHh
Confidence 6777777774 666655433334456777777777 44555433210 0012
Q ss_pred ccCccceEecCC---cccccccccc--CCccccccCCccEEEEecCCC-cceecchhhhcccCcccEEEEcccccccccc
Q 007039 438 TFPRLEELELVS---LTNIKKLWSD--QFQGIYCCQNLTKVTVWSCHR-LKYLFSYSMVNSLGQLQHLEIRNCRSIEGVV 511 (620)
Q Consensus 438 ~l~~L~~L~l~~---~~~l~~l~~~--~~~~~~~l~~L~~L~i~~C~~-L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~ 511 (620)
.+++|++|++.+ |..++..+.. .......+++|++|+++.|.+ +++.........+++|++|++++|. +....
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~ 479 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG 479 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH
Confidence 366777777763 3344432110 000123467777777776653 3433333334456777777777665 32211
Q ss_pred cccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCc
Q 007039 512 NTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKS 591 (620)
Q Consensus 512 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~ 591 (620)
.+.... .+++|++|+|++|+ ++.. .++.....+++|++|++++|. ++......+ ..+
T Consensus 480 ~~~~~~------~~~~L~~L~l~~n~-l~~~--------------~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l-~~~ 536 (592)
T 3ogk_B 480 LMEFSR------GCPNLQKLEMRGCC-FSER--------------AIAAAVTKLPSLRYLWVQGYR-ASMTGQDLM-QMA 536 (592)
T ss_dssp HHHHHT------CCTTCCEEEEESCC-CBHH--------------HHHHHHHHCSSCCEEEEESCB-CCTTCTTGG-GGC
T ss_pred HHHHHh------cCcccCeeeccCCC-CcHH--------------HHHHHHHhcCccCeeECcCCc-CCHHHHHHH-HHh
Confidence 111112 25677777777776 4321 122334456777777777775 554322222 124
Q ss_pred ccCccEEEecc
Q 007039 592 FSKLKKLKISG 602 (620)
Q Consensus 592 ~~sL~~L~i~~ 602 (620)
+|.++...|..
T Consensus 537 ~p~l~~~~~~~ 547 (592)
T 3ogk_B 537 RPYWNIELIPS 547 (592)
T ss_dssp CTTEEEEEECC
T ss_pred CCCcEEEEecC
Confidence 45555555543
No 43
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=2.1e-23 Score=227.54 Aligned_cols=410 Identities=17% Similarity=0.132 Sum_probs=211.8
Q ss_pred CCCCccEEEcccCCCCCccc--------------chHHHhcCCCCcEEEcCCCCCCC-Chhhhh-cccCCcEEEccCCC-
Q 007039 57 QCPNLQLFLLYTEGNGPMQV--------------SDHFFEGMEGLKVLQFPGIGSSS-LPSSLG-RLINLQTLCLDWCE- 119 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~--------------~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~-~l~~L~~L~L~~~~- 119 (620)
.+++|++|++.++.. ..++ ...+...+++|++|+++++.+.. .+..+. .+++|++|++++|.
T Consensus 64 ~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPH-FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCc-hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 567777777777643 1111 12234567788888888777653 233443 57788888888774
Q ss_pred CCC--h-hhhcCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCccccccch----HHHhCCcCCcEEEcCC
Q 007039 120 LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLEVIAP----NVISKLSQLEELYMGN 187 (620)
Q Consensus 120 ~~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~----~~l~~l~~L~~L~l~~ 187 (620)
+.+ + ..+.++++|++|++++|.++. ++.....+++|++|++++|. ..+.. ..+.++++|++|++.+
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 544 3 334467888888888776543 23333466788888887765 12221 1234567888888877
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEE-Eec
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMM-LKG 266 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~ 266 (620)
|... ......+.++++|++|++..+...-....+ ..+. +.+..+++|+.+. +..
T Consensus 221 ~~~~--------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~l~---------------~~l~~~~~L~~Ls~~~~ 275 (594)
T 2p1m_B 221 AVPL--------EKLATLLQRAPQLEELGTGGYTAEVRPDVY--SGLS---------------VALSGCKELRCLSGFWD 275 (594)
T ss_dssp TSCH--------HHHHHHHHHCTTCSEEECSBCCCCCCHHHH--HHHH---------------HHHHTCTTCCEEECCBT
T ss_pred CCcH--------HHHHHHHhcCCcceEcccccccCccchhhH--HHHH---------------HHHhcCCCcccccCCcc
Confidence 6322 113345566777787776544321000000 0000 0012222233221 111
Q ss_pred ccccccccchhHHHHHhccccceecccccChhhh-cccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 267 ~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
... .....+...+++|++|++.++. +... ... ....+++|++|++.+|. . +.........+++|++|
T Consensus 276 ---~~~-~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~--~~~~~~~L~~L~l~~~~--~---~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 276 ---AVP-AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVK--LLCQCPKLQRLWVLDYI--E---DAGLEVLASTCKDLREL 343 (594)
T ss_dssp ---CCG-GGGGGGHHHHTTCCEEECTTCC-CCHHHHHH--HHTTCTTCCEEEEEGGG--H---HHHHHHHHHHCTTCCEE
T ss_pred ---cch-hhHHHHHHhhCCCCEEEccCCC-CCHHHHHH--HHhcCCCcCEEeCcCcc--C---HHHHHHHHHhCCCCCEE
Confidence 000 0111112234566666665554 2111 000 02356677777777661 1 11111122346667777
Q ss_pred cccc--------ccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEE-----ecCCcccccc
Q 007039 346 SLMF--------LTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE-----DCDDLKMIIG 412 (620)
Q Consensus 346 ~l~~--------~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~~~~ 412 (620)
++.+ +..+.+.....+ ...+++|++|. .+|..++.........++++|++|++. +|..++..+.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l--~~~~~~L~~L~-~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESVL-YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHH--HHHCTTCCEEE-EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred EEecCcccccccCCCCCHHHHHHH--HHhchhHHHHH-HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 6633 333333221111 12377888884 456666654443344567888888888 5666653321
Q ss_pred cCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCcccc-ccCCccEEEEecCCCcceecchhhhc
Q 007039 413 PDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIY-CCQNLTKVTVWSCHRLKYLFSYSMVN 491 (620)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-~l~~L~~L~i~~C~~L~~l~~~~~~~ 491 (620)
.. + .......+++|++|++.+ ++... ....+. .+++|++|++++|. +++......+.
T Consensus 421 ~~--------~--------~~~l~~~~~~L~~L~L~~--~l~~~---~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~ 478 (594)
T 2p1m_B 421 DI--------G--------FGAIVEHCKDLRRLSLSG--LLTDK---VFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLS 478 (594)
T ss_dssp HH--------H--------HHHHHHHCTTCCEEECCS--SCCHH---HHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHH
T ss_pred hh--------H--------HHHHHhhCCCccEEeecC--cccHH---HHHHHHHhchhccEeeccCCC-CcHHHHHHHHh
Confidence 00 0 001134567888888865 33221 111111 37788888888874 55543334346
Q ss_pred ccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCC
Q 007039 492 SLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK 538 (620)
Q Consensus 492 ~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 538 (620)
.+++|++|+|++|+. .......... .+++|+.|++++|+.
T Consensus 479 ~~~~L~~L~L~~n~~-~~~~~~~~~~------~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF-GDKALLANAS------KLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSC-CHHHHHHTGG------GGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCC-cHHHHHHHHH------hCCCCCEEeeeCCCC
Confidence 678888888888874 3221111112 367888888888864
No 44
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=3.8e-23 Score=225.44 Aligned_cols=403 Identities=15% Similarity=0.105 Sum_probs=247.0
Q ss_pred cCCcEEEEccCCCC-cCCC---------------CcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCC-CC
Q 007039 36 QKDPIAISLPHRDI-QELP---------------ERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GS 97 (620)
Q Consensus 36 ~~~lr~L~l~~~~~-~~l~---------------~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~ 97 (620)
.++++++.+.++.. ..+. ... .+++|++|+++++.. ....+..+...+++|++|++++| .+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 57799999998752 2111 111 688999999999987 44445555447999999999999 45
Q ss_pred CC--ChhhhhcccCCcEEEccCCCCCC--hhhh----cCCCCCCEEecCCCC--CC--CCChhccCCCCCCEEeCCCCcc
Q 007039 98 SS--LPSSLGRLINLQTLCLDWCELAD--IAAI----GQLKKLEILSLAYSN--IN--QLPVEIGQLTRLQLLDLSNCWW 165 (620)
Q Consensus 98 ~~--lp~~~~~l~~L~~L~L~~~~~~~--~~~i----~~L~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~ 165 (620)
.. ++..+.++++|++|++++|.+.+ +..+ ..+++|++|++++|. +. .++..+.++++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 66666789999999999998664 3333 367799999999986 22 2333345689999999999966
Q ss_pred ccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE-eecCCCCCCCCcccccCceEEEEEeCCC
Q 007039 166 LEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE-IEVPDAEILPPDFVSVELQRYKIRIGDG 244 (620)
Q Consensus 166 ~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (620)
...++.. +.++++|++|++..+...... .........++++++|+.+. +.......++..
T Consensus 224 ~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~---------------- 284 (594)
T 2p1m_B 224 LEKLATL-LQRAPQLEELGTGGYTAEVRP--DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV---------------- 284 (594)
T ss_dssp HHHHHHH-HHHCTTCSEEECSBCCCCCCH--HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG----------------
T ss_pred HHHHHHH-HhcCCcceEcccccccCccch--hhHHHHHHHHhcCCCcccccCCcccchhhHHHH----------------
Confidence 7776654 889999999998765321000 00112345678889999883 332222222221
Q ss_pred CCCCCCccccccccccEEEEecccccccccc--hhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccC-
Q 007039 245 PEDEFDPLLVKSEASRLMMLKGIKKVSILQE--NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC- 321 (620)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~- 321 (620)
...+++|++|+++++. +.. ...+...+++|+.|++.++.....+.. + ...+++|++|++.+|
T Consensus 285 --------~~~~~~L~~L~L~~~~----l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~-l--~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 285 --------YSVCSRLTTLNLSYAT----VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV-L--ASTCKDLRELRVFPSE 349 (594)
T ss_dssp --------HHHHTTCCEEECTTCC----CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-H--HHHCTTCCEEEEECSC
T ss_pred --------HHhhCCCCEEEccCCC----CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH-H--HHhCCCCCEEEEecCc
Confidence 1234445555555422 221 111122346666666665521111111 0 123677888877443
Q ss_pred -------CCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEee-----cCCCceeecch--
Q 007039 322 -------SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD-----SCRKLKYLFSF-- 387 (620)
Q Consensus 322 -------~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~-- 387 (620)
..+. +.........+++|+.|. .+|.++.......+ ...+++|+.|++. +|..++..+..
T Consensus 350 ~~g~~~~~~l~---~~~l~~l~~~~~~L~~L~-~~~~~l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 350 PFVMEPNVALT---EQGLVSVSMGCPKLESVL-YFCRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp TTCSSCSSCCC---HHHHHHHHHHCTTCCEEE-EEESCCCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred ccccccCCCCC---HHHHHHHHHhchhHHHHH-HhcCCcCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 2221 111111223467888884 34555554332221 1347899999998 67788754322
Q ss_pred --hHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccc-
Q 007039 388 --SMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGI- 464 (620)
Q Consensus 388 --~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~- 464 (620)
..+.++++|++|++.+ .+...... .....+++|+.|++++|. +... ....+
T Consensus 424 ~~~l~~~~~~L~~L~L~~--~l~~~~~~--------------------~l~~~~~~L~~L~L~~~~-i~~~---~~~~l~ 477 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG--LLTDKVFE--------------------YIGTYAKKMEMLSVAFAG-DSDL---GMHHVL 477 (594)
T ss_dssp HHHHHHHCTTCCEEECCS--SCCHHHHH--------------------HHHHHCTTCCEEEEESCC-SSHH---HHHHHH
T ss_pred HHHHHhhCCCccEEeecC--cccHHHHH--------------------HHHHhchhccEeeccCCC-CcHH---HHHHHH
Confidence 2356788999999955 44433211 001237889999999884 3221 11111
Q ss_pred cccCCccEEEEecCCCcceecchhhhcccCcccEEEEccccc
Q 007039 465 YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRS 506 (620)
Q Consensus 465 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 506 (620)
..+++|++|++++|+. ++......+..+++|+.|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3589999999999865 5543444566789999999999975
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2.5e-21 Score=194.59 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
++++++++++.. ..+|..+ .++|++|++++|.+..++ ..+.++++|++|++++|.+.. +..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC--SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc--cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 577788877776 5666543 467888888888877663 467788888888888888776 56778888888888
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+... ......++.+ +|+.|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS------GFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG------GSCTTSSCSC-CCSCCB
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC------CCCcccccCC-ccCEEE
Confidence 88888888877665 788888888877 6677766677888888888887766411 1123445555 788888
Q ss_pred eecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
++++....+|..+. ++|+.|++..+...... ...+..+ ++|+.|++.++.-
T Consensus 179 l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~-~~~l~~l---------------------------~~L~~L~L~~N~l 229 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP-ETLNELHLDHNKIQAIE-LEDLLRY---------------------------SKLYRLGLGHNQI 229 (332)
T ss_dssp CCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCC-TTSSTTC---------------------------TTCSCCBCCSSCC
T ss_pred CcCCCCCccCcccc-CCCCEEECCCCcCCccC-HHHhcCC---------------------------CCCCEEECCCCcC
Confidence 88877776665432 45555555433221110 0012223 4455555544332
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCC---CCcCCCCcEE
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII 373 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~~L~~L 373 (620)
....... +..+++|++|+++++. +..++. ....+++|+.|+++++ .++.++...+.. ...++.|+.|
T Consensus 230 ~~~~~~~---~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 230 RMIENGS---LSFLPTLRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CCCCTTG---GGGCTTCCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred CcCChhH---hhCCCCCCEEECCCCc-CeecCh-----hhhcCccCCEEECCCC-CCCccChhHccccccccccccccce
Confidence 2111111 3367778888887773 333321 3456777888888774 355554433221 1125778888
Q ss_pred EeecCCCceeecchhHHHHhcccceEEEEecC
Q 007039 374 NVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (620)
Q Consensus 374 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 405 (620)
++.+++..........+..+++|+.++++++.
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCcccccccchhhhhhccccc
Confidence 88887643111122345678888888887764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=8.8e-21 Score=190.45 Aligned_cols=292 Identities=14% Similarity=0.110 Sum_probs=171.2
Q ss_pred CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
++++++++++.. ..+|..+ .+.+++|++++|.+..++. .++++++|++|++++|.+.. |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l--~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCc--cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 577777777766 5566543 3677888888888777654 67788888888888888776 56778888888888
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+... ......++++++|++|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG------GBCTTGGGGCTTCCEEE
T ss_pred CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc------CcChhhccCCCCcCEEE
Confidence 88888888777655 688888888877 6677766678888888888887766411 12335677788888888
Q ss_pred eecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
++++....++..+. ++|+.|++..+..... ....+..+++|+.|++++ +.-
T Consensus 178 l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~---------------------------n~l 228 (330)
T 1xku_A 178 IADTNITTIPQGLP-PSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSF---------------------------NSI 228 (330)
T ss_dssp CCSSCCCSCCSSCC-TTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCS---------------------------SCC
T ss_pred CCCCccccCCcccc-ccCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCC---------------------------CcC
Confidence 88887776665432 4555555533221110 001123333444444443 321
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCC---CCcCCCCcEE
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII 373 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~~L~~L 373 (620)
....... +..+++|++|+++++. +..++. ....+++|++|+++++. ++.++...+.. ....+.|+.|
T Consensus 229 ~~~~~~~---~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 229 SAVDNGS---LANTPHLRELHLNNNK-LVKVPG-----GLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp CEECTTT---GGGSTTCCEEECCSSC-CSSCCT-----TTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred ceeChhh---ccCCCCCCEEECCCCc-CccCCh-----hhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccce
Confidence 1111111 2355666666666663 222211 33455666666666543 44443322210 1124667777
Q ss_pred EeecCCCceeecchhHHHHhcccceEEEEec
Q 007039 374 NVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (620)
Q Consensus 374 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 404 (620)
++.+.+--........+..+++++.++++++
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCccccccccceeEEEeccc
Confidence 7776543211111234456677777777653
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3e-21 Score=193.08 Aligned_cols=130 Identities=24% Similarity=0.317 Sum_probs=92.2
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 161 (620)
...++++|+++++.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578888888888888888888888888888888888777 777888888888888888888888888888888888888
Q ss_pred CCccccccchHHHhC---------CcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 162 NCWWLEVIAPNVISK---------LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 162 ~~~~~~~~p~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
+|...+.+|.. +.. +++|++|++++|.+. ..+..++++++|++|++++|..
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCC
Confidence 87767777764 332 455555555544433 1223344445555555554443
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=7.8e-21 Score=188.93 Aligned_cols=174 Identities=15% Similarity=0.207 Sum_probs=115.2
Q ss_pred CCcEEEEccCCCCc---CCCCcC-CCCCccEEEccc-CCCCCcccchHHHhcCCCCcEEEcCCCCCC-CChhhhhcccCC
Q 007039 37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINL 110 (620)
Q Consensus 37 ~~lr~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L 110 (620)
.++++|+++++.+. .++... ++++|++|++++ |.. ...+|.. +.++++|++|++++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46777777777775 355444 677777777774 554 3455555 367777777777777775 567777777777
Q ss_pred cEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCC-CCCEEeCCCCccccccchHHHhCCcCCcEEEcC
Q 007039 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLT-RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 111 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 186 (620)
++|++++|.+.. |..++.+++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. +..+. |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 777777777663 566777777777777777776 6777777776 7777777777633345544 66665 7777777
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
+|.+.. .....++++++|+.|++++|..
T Consensus 206 ~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 206 RNMLEG--------DASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp SSEEEE--------CCGGGCCTTSCCSEEECCSSEE
T ss_pred CCcccC--------cCCHHHhcCCCCCEEECCCCce
Confidence 776542 2334566677777777766654
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=188.21 Aligned_cols=264 Identities=16% Similarity=0.125 Sum_probs=172.1
Q ss_pred EEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCC
Q 007039 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCE 119 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 119 (620)
..+.+++.+..+|... .++|++|++++|.+ ..++...+.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3677777777777643 25788888888877 556665567888888888888888765 4568888888888888888
Q ss_pred CCC-h-hhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 120 LAD-I-AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 120 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
+.. + ..++++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 188 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--- 188 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence 777 4 447888888888888888888876 577888888888888755677766557888888888888877652
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCC--CCCccccccccccEEEEecccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPED--EFDPLLVKSEASRLMMLKGIKKVS 271 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 271 (620)
.....++++++|++|++++|....++..... ++|+.|++..+..... ...+.......++.+.++. .
T Consensus 189 -----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~----~ 259 (353)
T 2z80_A 189 -----YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN----V 259 (353)
T ss_dssp -----ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES----C
T ss_pred -----cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc----c
Confidence 2235677788888888888877666655443 7788888866543322 1111123345566666666 2
Q ss_pred cccch-----hHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCC
Q 007039 272 ILQEN-----DGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS 322 (620)
Q Consensus 272 ~i~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 322 (620)
.+... ......+++|+.|++.++.-. .+.... ++.+++|++|++++++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~--~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI--FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT--TTTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH--HhcCCCCCEEEeeCCC
Confidence 22211 011122345566666554322 111110 2355666666666554
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=3.8e-20 Score=181.70 Aligned_cols=191 Identities=23% Similarity=0.297 Sum_probs=132.1
Q ss_pred chhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCC-CCCC-h
Q 007039 26 DLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSL-P 101 (620)
Q Consensus 26 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p 101 (620)
+...+|. .+++++++|+++++.+..++.. .++++|++|++++|.+ ..++...+..+++|++|++++|. +..+ |
T Consensus 22 ~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 22 GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 3444443 4567778888888777666542 2777888888877766 44433445777788888888776 6666 5
Q ss_pred hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCc
Q 007039 102 SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~ 178 (620)
..+..+++|++|++++|.+.. +..+.++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+.+++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCcc
Confidence 667777788888888877766 45677778888888888777776654 6777788888887776 6666665577777
Q ss_pred CCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
+|++|++++|.+.. .....++++++|+.|++++|....++..
T Consensus 178 ~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 178 SLDRLLLHQNRVAH--------VHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred ccCEEECCCCcccc--------cCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 88888887776652 2235566777777777777776655543
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.6e-20 Score=187.87 Aligned_cols=193 Identities=24% Similarity=0.357 Sum_probs=162.7
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
..+++.|+++++.+..+|... ++++|++|++++|.+ ..+|..+ ..+++|++|++++|.+..+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l--~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL--MELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC--CCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc--cchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 578999999999999888766 899999999999998 4788764 889999999999999999999999999999999
Q ss_pred ccCCCCC-C-hhhhc---------CCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEE
Q 007039 115 LDWCELA-D-IAAIG---------QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183 (620)
Q Consensus 115 L~~~~~~-~-~~~i~---------~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L 183 (620)
+++|.+. . |..++ ++++|++|++++|.++.+|..++++++|++|++++|. +..+|.. +.++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence 9998744 4 55554 4999999999999999999999999999999999998 6788876 8999999999
Q ss_pred EcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC-CCCCCCcccc-cCceEEEEEe
Q 007039 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPPDFVS-VELQRYKIRI 241 (620)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-~~L~~L~l~~ 241 (620)
++++|.+... .+..++++++|+.|++++|. ...+|..+.. ++|+.|++..
T Consensus 235 ~Ls~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 235 DLRGCTALRN--------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp ECTTCTTCCB--------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred ECcCCcchhh--------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 9999887632 34568889999999999876 4455555444 5666666543
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3.1e-19 Score=179.12 Aligned_cols=287 Identities=13% Similarity=0.122 Sum_probs=140.0
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEcc
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~ 116 (620)
+++.++++++.+..+|... .+++++|++++|.+ ..++...+.++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3555555555555554432 24555666666555 344443345566666666666655554 4555566666666666
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCcccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
+|.+.+ |..+. ++|++|++++|.+..++. .+.++++|++|++++|. +.. +....+.++++|++|+++++.+..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcccc
Confidence 665554 33332 456666666665555443 25556666666665554 221 222225555666666665555431
Q ss_pred ccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCccc-c-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccc
Q 007039 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFV-S-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (620)
. ...+ .++|++|++++|....++...+ . ++|+.|++..+..... ....+..+++|+.|+++++.-
T Consensus 186 l---------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l- 252 (330)
T 1xku_A 186 I---------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKL- 252 (330)
T ss_dssp C---------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCC-
T ss_pred C---------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcC-
Confidence 1 0111 1455555555555444433222 2 5555555543332111 001144556666666666321
Q ss_pred ccccchhHHHHHhccccceecccccChhhhcccCCc---CCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 271 SILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD---GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 271 ~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
..+ +.++ ..+++|++|++.++.-.......+.. ....+.|+.|++.+++.....+ .......++.++.+++
T Consensus 253 ~~l--p~~l-~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i---~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 253 VKV--PGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI---QPSTFRCVYVRAAVQL 326 (330)
T ss_dssp SSC--CTTT-TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS---CGGGGTTCCCGGGEEC
T ss_pred ccC--Chhh-ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc---CccccccccceeEEEe
Confidence 111 1121 23466777777655433222222221 1235788999999886321000 0013445667777777
Q ss_pred cc
Q 007039 348 MF 349 (620)
Q Consensus 348 ~~ 349 (620)
++
T Consensus 327 ~~ 328 (330)
T 1xku_A 327 GN 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=4.4e-21 Score=202.30 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=103.3
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-----CChhhhhcccCCcEEEccCCCCCC--hhhh-cCCC
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-----SLPSSLGRLINLQTLCLDWCELAD--IAAI-GQLK 130 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~--~~~i-~~L~ 130 (620)
++|++|+++++.. .......++..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l-~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCC-CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhccc-CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4577777877766 22223444577888888888888876 356777778888888888887765 3333 3455
Q ss_pred ----CCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCccccccchHHHh-----CCcCCcEEEcCCCcccccccc
Q 007039 131 ----KLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-----KLSQLEELYMGNGFSGWEKVE 196 (620)
Q Consensus 131 ----~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~-----~l~~L~~L~l~~~~~~~~~~~ 196 (620)
+|++|++++|.+. .+|..+.++++|++|++++|. +.......+. ..++|++|++++|.+....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-- 158 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-- 158 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG--
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH--
Confidence 6888888888777 456777888888888888877 4432221122 2457888888887665211
Q ss_pred CCCCcchhhhcCCCCCCEEEeecCC
Q 007039 197 GGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
.......++++++|++|++++|.
T Consensus 159 --~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 159 --CEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSB
T ss_pred --HHHHHHHHhhCCCCCEEECcCCC
Confidence 01223455667778888877664
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.9e-19 Score=180.76 Aligned_cols=288 Identities=15% Similarity=0.126 Sum_probs=182.4
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEcc
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~ 116 (620)
+++.++++++.+..+|... .+++++|++++|.+ ..++...+.++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777888888877777544 36788888888876 555554467888888888888887765 6678888888888888
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCcccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
+|.+.. |..+. ++|++|++++|.+..+|.. +.++++|++|++++|. ++. +....+..+ +|++|++++|.+..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 888777 54444 7888888888888877654 7778888888888876 332 333335666 78888888777652
Q ss_pred ccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCccc-c-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccc
Q 007039 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFV-S-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (620)
. ...+ .++|++|++++|....++...+ . ++|+.|++..+..... ....+..+++|+.|+++++.-
T Consensus 187 l---------~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l- 253 (332)
T 2ft3_A 187 I---------PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNNKL- 253 (332)
T ss_dssp C---------CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEECCSSCC-
T ss_pred c---------Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEECCCCcC-
Confidence 1 1111 1567777787777766664333 3 7777777765543222 111256677888888887422
Q ss_pred ccccchhHHHHHhccccceecccccChhhhcccCCc---CCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 271 SILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD---GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 271 ~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
..+ +.+ ...+++|+.|++.+..-.......+.. ...++.|+.|++.+++....-. .......+++|+.+++
T Consensus 254 ~~l--p~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~---~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 254 SRV--PAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV---QPATFRCVTDRLAIQF 327 (332)
T ss_dssp CBC--CTT-GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS---CGGGGTTBCCSTTEEC
T ss_pred eec--Chh-hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc---Ccccccccchhhhhhc
Confidence 122 222 234678888888876533222222221 1236789999999987321000 0113456777888887
Q ss_pred cccc
Q 007039 348 MFLT 351 (620)
Q Consensus 348 ~~~~ 351 (620)
+++.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 7653
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=183.55 Aligned_cols=225 Identities=20% Similarity=0.203 Sum_probs=154.0
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
.|+...+.+++++.. ..+|..+ .++|++|++++|.+..+|. .+.++++|++|++++|.+.. +..++++++|+
T Consensus 29 ~C~~~~~c~~~~~~l--~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSL--NSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTC--SSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCc--ccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 566667788888877 7788754 4689999999999988765 78899999999999999887 46789999999
Q ss_pred EEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCC
Q 007039 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE 211 (620)
Q Consensus 134 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 211 (620)
+|++++|.++.+|.. ++++++|++|++++|. +..+|. ..+.++++|++|++++|.... ......++++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------~~~~~~~~~l~~ 175 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-------KIQRKDFAGLTF 175 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-------EECTTTTTTCCE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-------ccCHHHccCCCC
Confidence 999999999988876 8889999999999987 677776 457889999999998874221 122356778889
Q ss_pred CCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccc-hhHHHHHhcccccee
Q 007039 212 LTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE-NDGTKMLLQRTEDLW 290 (620)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~-~~~~~~~l~~L~~L~ 290 (620)
|++|++++|....+.... +..+++|++|+++++ .+.. +......+++|+.|+
T Consensus 176 L~~L~l~~n~l~~~~~~~-----------------------l~~l~~L~~L~l~~n----~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKS-----------------------LKSIQNVSHLILHMK----QHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp EEEEEEEETTCCEECTTT-----------------------TTTCSEEEEEEEECS----CSTTHHHHHHHHTTTEEEEE
T ss_pred CCEEECCCCCcCccCHHH-----------------------HhccccCCeecCCCC----ccccchhhhhhhcccccEEE
Confidence 999999988766543221 233444555555542 1211 222233456677777
Q ss_pred cccccChhhhcccCCcCCCccccceEEeccC
Q 007039 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDC 321 (620)
Q Consensus 291 l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 321 (620)
+.++.........+......+.++.++++++
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred CCCCccccccccccccccccchhhccccccc
Confidence 6655432222122221223455666666554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.4e-19 Score=179.72 Aligned_cols=171 Identities=22% Similarity=0.187 Sum_probs=78.4
Q ss_pred EEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC---hhhhhcccCCcEEEccCC
Q 007039 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 42 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~L~~~ 118 (620)
++..++.+..+|... .+++++|++++|.. ..+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 444444444444322 13455555555544 344444444555555555555554432 334444555555555555
Q ss_pred CCCC-hhhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD-IAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. +..+..+++|++|++++|.+..++. .+..+++|++|++++|. +...+...+.++++|++|++++|.+..
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 164 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE--- 164 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG---
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc---
Confidence 5444 3444455555555555554444432 34455555555555544 333333234455555555555544431
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
......++++++|++|++++|...
T Consensus 165 ----~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 165 ----NFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp ----GEECSCCTTCTTCCEEECTTSCCC
T ss_pred ----ccchhHHhhCcCCCEEECCCCCcC
Confidence 011233444455555555554443
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=9.3e-20 Score=181.15 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=129.7
Q ss_pred CCccEEEcccCCCCCc--ccchHHHhcCCCCcEEEcCC-CCCC-CChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCC
Q 007039 59 PNLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKL 132 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L 132 (620)
.+++.|+++++.. .. .+|.. +..+++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..+.++++|
T Consensus 50 ~~l~~L~L~~~~l-~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNL-PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCC-SSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCc-cCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 5899999999988 44 67766 48899999999995 7765 689999999999999999999874 7889999999
Q ss_pred CEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCc-CCcEEEcCCCccccccccCCCCcchhhhcCCC
Q 007039 133 EILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSGWEKVEGGSNASLVELERLT 210 (620)
Q Consensus 133 ~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 210 (620)
++|++++|.+. .+|..++.+++|++|++++|.....+|.. +.++. +|++|++++|.+... .+..+++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~--------~~~~~~~l~ 198 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK--------IPPTFANLN 198 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE--------CCGGGGGCC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc--------CChHHhCCc
Confidence 99999999888 78999999999999999999854477776 88887 999999999987632 335666776
Q ss_pred CCCEEEeecCCCCC
Q 007039 211 ELTTLEIEVPDAEI 224 (620)
Q Consensus 211 ~L~~L~l~~~~~~~ 224 (620)
|+.|++++|....
T Consensus 199 -L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 199 -LAFVDLSRNMLEG 211 (313)
T ss_dssp -CSEEECCSSEEEE
T ss_pred -ccEEECcCCcccC
Confidence 9999998876543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=185.10 Aligned_cols=188 Identities=22% Similarity=0.262 Sum_probs=136.7
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~ 117 (620)
.+.++..+..+..+|.... ++++.|++++|.+ ..++...|.++++|++|++++|.+..++ ..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4567777777777776442 6788888888877 5555555678888888888888887654 5778888888888888
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
|.+.. + ..|..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 88777 3 467888888888888888887765 57788888888888877677777766788888888888888765
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKI 239 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l 239 (620)
.+..+.++++|++|++++|....++...+. ++|+.|.+
T Consensus 199 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 199 -------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp -------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 223467778888888888876655433222 44444444
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=8e-19 Score=174.13 Aligned_cols=231 Identities=17% Similarity=0.143 Sum_probs=183.6
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCccc---chHHHhcCCCCcEEEcCCCCCC
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQV---SDHFFEGMEGLKVLQFPGIGSS 98 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~~ 98 (620)
+.+...+|. .+++++++|+++++.+..++... ++++|++|++++|.. ..+ +.. +..+++|++|++++|.+.
T Consensus 16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~-~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL--SFKGCCSQS-DFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CEEEEEEHH-HHSCSCCCEEECCSCSEE
T ss_pred CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc--CcccCcccc-cccccccCEEECCCCccc
Confidence 344445454 55789999999999999888743 899999999999987 322 444 467999999999999999
Q ss_pred CChhhhhcccCCcEEEccCCCCCC-h--hhhcCCCCCCEEecCCCCCCC-CChhccCCCCCCEEeCCCCcccc-ccchHH
Q 007039 99 SLPSSLGRLINLQTLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLE-VIAPNV 173 (620)
Q Consensus 99 ~lp~~~~~l~~L~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~-~~p~~~ 173 (620)
.+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.... .+|..
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 170 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 170 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-
Confidence 999889999999999999999876 3 579999999999999998884 45668899999999999998433 24554
Q ss_pred HhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCc
Q 007039 174 ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDP 251 (620)
Q Consensus 174 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~ 251 (620)
+..+++|++|++++|.+.. .....++++++|++|++++|....++...+. ++|+.|++..+...... ..
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~ 241 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQ 241 (306)
T ss_dssp CTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SS
T ss_pred HhhCcCCCEEECCCCCcCC--------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HH
Confidence 8999999999999998762 2245678899999999999998887765444 89999999765533221 11
Q ss_pred ccccc-ccccEEEEeccc
Q 007039 252 LLVKS-EASRLMMLKGIK 268 (620)
Q Consensus 252 ~~~~~-~~L~~L~l~~~~ 268 (620)
.+... ++|+.|++++++
T Consensus 242 ~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCCCTTCCEEECTTCC
T ss_pred HHHhhhccCCEEEccCCC
Confidence 24444 488999998844
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=6e-19 Score=185.04 Aligned_cols=177 Identities=23% Similarity=0.235 Sum_probs=131.5
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~ 117 (620)
.+.++..+..+..+|... .+++++|++++|.+ ..++...|.++++|++|++++|.+..++ ..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456677777777776543 25788888888877 5555455678888888888888887654 6778888888888888
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
|.+.. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 88776 3 557788888888888888887765 57788888888888877677787766788888888888888765
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
.+..+..+++|++|++++|....++..
T Consensus 210 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 210 -------DMPNLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp -------SCCCCTTCTTCCEEECTTSCCSEECGG
T ss_pred -------ccccccccccccEEECcCCcCcccCcc
Confidence 123467778888888888776655443
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=180.86 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=188.0
Q ss_pred CccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC
Q 007039 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (620)
Q Consensus 23 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 100 (620)
.+.+...+|. +++.+++.|++++|.+..++.. .++++|++|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus 51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCee
Confidence 3444555554 5678999999999999877643 3899999999999998 667766689999999999999999998
Q ss_pred hh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCC-CCCCCCh-hccCCCCCCEEeCCCCccccccchHHHh
Q 007039 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 101 p~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
|. .+..+++|++|++++|.+.. + ..|.++++|++|+++++ .+..++. .+.++++|++|++++|. +..+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cC
Confidence 75 68999999999999999987 4 68999999999999996 7777765 58899999999999998 788886 89
Q ss_pred CCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccc
Q 007039 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL 253 (620)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~ 253 (620)
.+++|++|++++|.+.. .....+.++++|+.|++++|....++...+. ++|+.|++..+...... ...+
T Consensus 205 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~ 275 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSA--------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLF 275 (440)
T ss_dssp TCSSCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTT
T ss_pred CCcccCEEECCCCccCc--------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHh
Confidence 99999999999998762 2346788999999999999998877766544 88888888665433221 1124
Q ss_pred cccccccEEEEecccc
Q 007039 254 VKSEASRLMMLKGIKK 269 (620)
Q Consensus 254 ~~~~~L~~L~l~~~~~ 269 (620)
..+++|+.|++.+++-
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 5667778888777543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=2.4e-18 Score=180.44 Aligned_cols=230 Identities=17% Similarity=0.165 Sum_probs=186.7
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 101 (620)
+.+...+|. +++++++.|++++|.+..++.. .++++|++|++++|.+ ..++...|.++++|++|++++|.+..+|
T Consensus 63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccC
Confidence 344555553 5678999999999999877443 3899999999999988 6666666789999999999999999887
Q ss_pred h-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCC-CCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhC
Q 007039 102 S-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (620)
Q Consensus 102 ~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~ 176 (620)
. .++++++|++|++++|.+.. + ..+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~ 216 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTP 216 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTT
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccc
Confidence 5 58899999999999999987 4 68999999999999996 7777776 48899999999999998 788876 899
Q ss_pred CcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCcccc
Q 007039 177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLV 254 (620)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~ 254 (620)
+++|++|++++|.+.. .....+.++++|+.|++++|....++...+. ++|+.|++..+..... ....+.
T Consensus 217 l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~ 287 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPE--------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFT 287 (452)
T ss_dssp CTTCCEEECTTSCCSE--------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTSST
T ss_pred cccccEEECcCCcCcc--------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-ChHHhc
Confidence 9999999999998862 2346788999999999999998777665444 8899998876653322 111245
Q ss_pred ccccccEEEEeccc
Q 007039 255 KSEASRLMMLKGIK 268 (620)
Q Consensus 255 ~~~~L~~L~l~~~~ 268 (620)
.+++|+.|++.+++
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 67788888888754
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=2.7e-18 Score=168.38 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=157.3
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 117 (620)
.+.++..++.+..+|... .++|++|++++|.+ ..++...+..+++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 377888888888887643 57999999999998 667766678999999999999999876 77899999999999999
Q ss_pred CC-CCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 118 CE-LAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 118 ~~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
|. +.. +..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..++...+.++++|++|++++|.+...
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc
Confidence 97 776 57899999999999999999877 5668999999999999998 7788877689999999999999987621
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc-ccc-cCceEEEEEeC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPD-FVS-VELQRYKIRIG 242 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~~L~~L~l~~~ 242 (620)
....+.++++|+.|++++|....+... +.. ++|+.|++..+
T Consensus 169 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 169 --------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 223578899999999999987665333 222 55666655443
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=7.8e-18 Score=165.04 Aligned_cols=191 Identities=21% Similarity=0.219 Sum_probs=158.5
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.++++.+++.++.+..+|.... +++++|++++|.+ ..++...+..+++|++|++++|.+..++.. +.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 5678999999999988886543 7899999999988 566655678999999999999999888764 78899999999
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
++|.+.. |..+..+++|++|++++|.++.+| ..+.++++|++|++++|+ +..+|...+..+++|+.|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999888 778889999999999999999887 458899999999999988 7888887788999999999999987621
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEE
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKI 239 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 239 (620)
....+.++++|+.|++++|....+|..+.. ..|+.+.+
T Consensus 164 --------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 164 --------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred --------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 123467889999999999998888877544 55555554
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.3e-17 Score=177.54 Aligned_cols=169 Identities=20% Similarity=0.154 Sum_probs=136.4
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+++.|+++++.+..+|.... ++|++|++++|.+ ..+|. .+++|++|++++|.+..+|. .+++|++|++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 4568999999999998887554 8999999999987 56775 57999999999999999987 6789999999
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
++|.+.. +. .+.+|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++.+|.+..
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~-- 175 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS-- 175 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC--
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC--
Confidence 9999888 44 678999999999999999874 4899999999997 677765 35789999999988761
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
+. ..+++|+.|++++|....++... ++|+.|.+
T Consensus 176 --------l~--~~~~~L~~L~Ls~N~l~~l~~~~--~~L~~L~L 208 (622)
T 3g06_A 176 --------LP--MLPSGLQELSVSDNQLASLPTLP--SELYKLWA 208 (622)
T ss_dssp --------CC--CCCTTCCEEECCSSCCSCCCCCC--TTCCEEEC
T ss_pred --------Cc--ccCCCCcEEECCCCCCCCCCCcc--chhhEEEC
Confidence 11 45688999999988877665421 44555544
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.4e-17 Score=164.85 Aligned_cols=187 Identities=17% Similarity=0.257 Sum_probs=155.6
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++++|++.++.+..++....+++|++|++++|.+ ..++. +..+++|++|++++|.+..++ .+.++++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 678999999999998888766899999999999987 56665 688999999999999998887 5889999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.....+..+++|++|++++|.+..++. ++.+++|++|++++|. +..++. +.++++|++|++++|.+.
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC----
Confidence 99998885558999999999999999998875 8899999999999987 777776 889999999999998876
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG 242 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 242 (620)
.+..+.++++|++|++++|....++. +.. ++|+.|++..+
T Consensus 187 ------~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 ------DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp ------CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE
T ss_pred ------cChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC
Confidence 22337888999999999988776663 233 66666666443
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.5e-17 Score=161.61 Aligned_cols=191 Identities=21% Similarity=0.310 Sum_probs=150.6
Q ss_pred CCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhh-hhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L 115 (620)
...+.++++++.+..+|.... +++++|++++|.+ ..++...+..+++|++|++++|.+..+|.. +.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 456789999998888876443 6799999999987 566665578899999999999999888754 578999999999
Q ss_pred cCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccc
Q 007039 116 DWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 116 ~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE
Confidence 9999887 4 5678899999999999988877654 6889999999999987 778887768889999999999887762
Q ss_pred ccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEE
Q 007039 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKI 239 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l 239 (620)
. ....+.++++|++|++++|....++...+. ++|+.+.+
T Consensus 172 ~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 172 V--------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp C--------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred e--------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 1 224577888999999998887777665322 44444444
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.4e-17 Score=161.80 Aligned_cols=187 Identities=24% Similarity=0.323 Sum_probs=159.9
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 101 (620)
..+...+|. .++.++++|+++++.+..++. ..++++|++|++++|.+ ..++..+|..+++|++|++++|.+..+|
T Consensus 25 ~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 25 SKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp TSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 344444443 457889999999999988875 33899999999999988 6788887889999999999999999887
Q ss_pred h-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCC
Q 007039 102 S-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (620)
Q Consensus 102 ~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l 177 (620)
. .+.++++|++|++++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+.++
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 180 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence 4 57899999999999999887 46789999999999999999998876 7899999999999998 788887778999
Q ss_pred cCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 178 SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
++|++|++++|.+... ....+..+++|+.|++++|..
T Consensus 181 ~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCe
Confidence 9999999999987621 224577889999999998864
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=6.7e-20 Score=193.21 Aligned_cols=351 Identities=18% Similarity=0.107 Sum_probs=174.7
Q ss_pred CCcEEEEccCCCCcCCC--C-cCCCCCccEEEcccCCCCCc----ccchHHHhcCCCCcEEEcCCCCCCCC-h-hhhhcc
Q 007039 37 KDPIAISLPHRDIQELP--E-RLQCPNLQLFLLYTEGNGPM----QVSDHFFEGMEGLKVLQFPGIGSSSL-P-SSLGRL 107 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~--~-~~~~~~Lr~L~l~~~~~~~~----~~~~~~~~~l~~Lr~L~l~~~~~~~l-p-~~~~~l 107 (620)
+++++|+++++.+...+ . ...+++|++|++++|.. .. .++. .+..+++|++|++++|.+... + .....+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 34556666655553221 1 11455666666666554 11 1222 234556666666666655431 1 112223
Q ss_pred c----CCcEEEccCCCCCC------hhhhcCCCCCCEEecCCCCCCCC-Ch----h-ccCCCCCCEEeCCCCccccccc-
Q 007039 108 I----NLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNINQL-PV----E-IGQLTRLQLLDLSNCWWLEVIA- 170 (620)
Q Consensus 108 ~----~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-p~----~-i~~l~~L~~L~l~~~~~~~~~p- 170 (620)
. +|++|++++|.+.+ +..+.++++|++|++++|.+... +. . ....++|++|++++|. +....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 3 46666666666542 34555666666666666655421 11 1 1123456666666654 33211
Q ss_pred ---hHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhc-----CCCCCCEEEeecCCCCCC-----CCcccc-cCceE
Q 007039 171 ---PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-----RLTELTTLEIEVPDAEIL-----PPDFVS-VELQR 236 (620)
Q Consensus 171 ---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~-~~L~~ 236 (620)
...+..+++|++|++++|.+.. ..+..+. ..++|++|++++|..... +..+.. ++|++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~--------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINE--------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHH--------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHhhCCCCCEEECcCCCcch--------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 1124455666666666555431 1111111 244566666665554432 222222 55666
Q ss_pred EEEEeCCCCCCCC----CccccccccccEEEEecccccccccch-----hHHHHHhccccceecccccChhhhcccCCc-
Q 007039 237 YKIRIGDGPEDEF----DPLLVKSEASRLMMLKGIKKVSILQEN-----DGTKMLLQRTEDLWLETLEGVQSVVHELDD- 306 (620)
Q Consensus 237 L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~i~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~- 306 (620)
|++..+....... .......++|+.|+++++ .+... ......+++|++|++.++.-.......+..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n----~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC----GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS----CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC----CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 6554332111000 000113567888888873 33321 112233678999998876532221111110
Q ss_pred -CCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCC--CCcCCCCcEEEeecCCCcee
Q 007039 307 -GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKY 383 (620)
Q Consensus 307 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~ 383 (620)
....++|++|++++|. +..............+++|++|+++++ .+.+.....+.. ....++|++|++.+| .++.
T Consensus 308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~ 384 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSD 384 (461)
T ss_dssp HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCCh
Confidence 1234699999999986 221100001113345689999999987 455533221110 112679999999998 4553
Q ss_pred e---cchhHHHHhcccceEEEEecC
Q 007039 384 L---FSFSMAKNLLRLQKVKVEDCD 405 (620)
Q Consensus 384 ~---~~~~~~~~l~~L~~L~l~~c~ 405 (620)
. .....+..+++|++|++++|+
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 112346779999999999975
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=6.2e-18 Score=164.98 Aligned_cols=184 Identities=23% Similarity=0.256 Sum_probs=121.5
Q ss_pred cccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L 110 (620)
.++.++++|+++++.+..++. ..++++|++|++++|.. ..++...+..+++|++|++++|.+..++ ..+.++++|
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 345667777777777766654 22677777777777766 4555544577777777777777776654 567777777
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCc----E
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE----E 182 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~----~ 182 (620)
++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+.+|+ .
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhcccccee
Confidence 777777777666 3 357777777777777777764 56777777777777777776 5555544455555555 6
Q ss_pred EEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcc
Q 007039 183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF 229 (620)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 229 (620)
|++++|.+... ........+|+.|++++|....++...
T Consensus 182 L~ls~n~l~~~---------~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 182 LDLSLNPMNFI---------QPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp EECCSSCCCEE---------CTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred eecCCCccccc---------CccccCCCcccEEECCCCceeecCHhH
Confidence 77777665521 112222336777777777766665543
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4e-19 Score=177.02 Aligned_cols=246 Identities=13% Similarity=-0.006 Sum_probs=131.9
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
.+++|++|++++|.+ ..++...+..+++|++|++++|.+...++ ++.+++|++|++++|.+... ...++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred cCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEE
Confidence 345666666666665 44444445666666666666666655443 56666666666666665441 1225666666
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhh-cCCCCCCEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTL 215 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L 215 (620)
+++|.+..++.. .+++|++|++++|. +..++...+..+++|++|++++|.+... .+..+ ..+++|++|
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcc--------cHHHHhhccCcCCEE
Confidence 666666655432 35566666666665 4455443356666666666666655411 11222 345666666
Q ss_pred EeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceeccccc
Q 007039 216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (620)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~ 295 (620)
++++|....++.....++|+.|+++.+... .+. .. ...+++|+.|++.++.
T Consensus 175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~--------------------------~l~--~~-~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--------------------------FMG--PE-FQSAAGVTWISLRNNK 225 (317)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCC--------------------------EEC--GG-GGGGTTCSEEECTTSC
T ss_pred ECCCCcCcccccccccccCCEEECCCCcCC--------------------------cch--hh-hcccCcccEEECcCCc
Confidence 666665544432211133333333222111 110 11 1124556666665543
Q ss_pred ChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhh
Q 007039 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETI 356 (620)
Q Consensus 296 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 356 (620)
-. .+... +..+++|+.|++++++-.. +........+++|+.+++.++..++..
T Consensus 226 l~-~l~~~---~~~l~~L~~L~l~~N~~~~----~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 226 LV-LIEKA---LRFSQNLEHFDLRGNGFHC----GTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CC-EECTT---CCCCTTCCEEECTTCCCBH----HHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cc-chhhH---hhcCCCCCEEEccCCCccC----cCHHHHHhccccceEEECCCchhccCC
Confidence 22 22222 3478899999999886320 111124457788888888877766554
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=7.2e-17 Score=157.42 Aligned_cols=217 Identities=17% Similarity=0.207 Sum_probs=169.7
Q ss_pred EEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCC
Q 007039 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCEL 120 (620)
Q Consensus 42 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~ 120 (620)
+.-.+..+..+|.... ++|++|++++|.+ ..++...+.++++|++|++++|.+..++ ..+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 4445555666666432 5799999999988 6666655789999999999999998876 4789999999999999999
Q ss_pred CC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCccccccc
Q 007039 121 AD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 121 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.. +..+.++++|++|++++|.+..++. .++++++|++|++++|. +.. +|.. +.++++|++|++++|.+.....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCCH
Confidence 87 4789999999999999999998766 68999999999999998 555 4554 8999999999999998763211
Q ss_pred cCCCCcchhhhcCCCCCC-EEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccc
Q 007039 196 EGGSNASLVELERLTELT-TLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
..+..+.+++.+. .|++++|....++..... .+|+.|++..+...... ...+...++|+.+++++++-
T Consensus 167 -----~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 167 -----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -----GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSCB
T ss_pred -----HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccEEEccCCcc
Confidence 2345555566555 899999998888877666 78999999766543221 11246678888888887544
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1e-16 Score=155.80 Aligned_cols=174 Identities=25% Similarity=0.272 Sum_probs=137.8
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 114 (620)
.++++.|++.++.+..++....+++|++|++++|.. ..++ . +..+++|++|++++|.+..++. .++++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 677888999988888877766888999999988887 4444 2 5788899999999988887764 468888899999
Q ss_pred ccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++|.+.. + ..++.+++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC
Confidence 99888877 3 5578888999999998888877665 5788899999998887 67777766788888999998888776
Q ss_pred cccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 192 WEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
.. ....++++++|+.|++++|..
T Consensus 195 ~~--------~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 195 SV--------PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CC--------CTTTTTTCTTCCEEECCSSCB
T ss_pred cc--------CHHHHhCCcCCCEEEccCCCc
Confidence 21 224467788888888887753
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.2e-16 Score=158.14 Aligned_cols=179 Identities=20% Similarity=0.295 Sum_probs=156.0
Q ss_pred hhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 31 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
+.....++++.|++++|.+..++...++++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 131 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNL 131 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC--SCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC--CCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence 33344789999999999999888866999999999999988 55553 6899999999999999999886 8999999
Q ss_pred cEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcc
Q 007039 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 111 ~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
++|++++|.+.....++.+++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|++|++++|.+
T Consensus 132 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTSCC
T ss_pred CEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCCcc
Confidence 9999999999884449999999999999999999886 9999999999999998 777876 89999999999999988
Q ss_pred ccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
. .+..+.++++|+.|++++|.....+..
T Consensus 208 ~----------~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 208 S----------DVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp C----------BCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred C----------ccccccCCCCCCEEEccCCeeecCCee
Confidence 6 122488999999999999987655543
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.7e-17 Score=161.34 Aligned_cols=188 Identities=20% Similarity=0.263 Sum_probs=152.4
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
++..+.+..+.+........+++|+.|++.++.. ..++. +..+++|++|++++|.+..++ .++++++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCc--ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 3455666666666655555889999999999987 55554 578999999999999998876 688999999999999
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
|.+.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...+.++++|++|++++|.+...
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 172 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL- 172 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc-
Confidence 99887 4 5689999999999999999988765 7899999999999997 7788887688999999999999987621
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKI 239 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l 239 (620)
....++++++|+.|++++|....++...+. ++|+.|.+
T Consensus 173 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 173 -------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred -------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 224478899999999999988777665322 45555544
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2e-17 Score=164.32 Aligned_cols=215 Identities=16% Similarity=0.171 Sum_probs=141.5
Q ss_pred cEEEEccCCCCcC--CCCcC--------CCCCccEEEcccCCCCCcccchHHH-hcCCCCcEEEcCCCCCCCChhhhhcc
Q 007039 39 PIAISLPHRDIQE--LPERL--------QCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSLPSSLGRL 107 (620)
Q Consensus 39 lr~L~l~~~~~~~--l~~~~--------~~~~Lr~L~l~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~lp~~~~~l 107 (620)
+++|+++++.+.. ++... ++++|++|++++|.+ ...+|..++ ..+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 6666666666632 22222 477888888888776 445565543 67788888888888877777777766
Q ss_pred -----cCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCC---CChhc--cCCCCCCEEeCCCCcccc---ccchH
Q 007039 108 -----INLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ---LPVEI--GQLTRLQLLDLSNCWWLE---VIAPN 172 (620)
Q Consensus 108 -----~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~~~---~~p~~ 172 (620)
++|++|++++|.+.. +..++++++|++|++++|.+.. +|..+ +++++|++|++++|. +. .++..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHH
Confidence 788888888888776 3677888888888888886542 34444 777888888888876 55 34444
Q ss_pred HHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCcc
Q 007039 173 VISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPL 252 (620)
Q Consensus 173 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 252 (620)
.+.++++|++|++++|.+.... ....+..+++|++|++++|....+|..+. ++|+.|+++.+..... |.
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~---p~ 291 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAA-------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRN---PS 291 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSC-------CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSC---CC
T ss_pred HHhcCCCCCEEECCCCcCCccc-------chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCC---hh
Confidence 4567788888888887765211 12344566778888888887777776655 6677777755543322 22
Q ss_pred ccccccccEEEEec
Q 007039 253 LVKSEASRLMMLKG 266 (620)
Q Consensus 253 ~~~~~~L~~L~l~~ 266 (620)
+..+++|+.|++++
T Consensus 292 ~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 292 PDELPQVGNLSLKG 305 (312)
T ss_dssp TTTSCEEEEEECTT
T ss_pred HhhCCCCCEEeccC
Confidence 44455555555554
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=9.1e-17 Score=157.58 Aligned_cols=172 Identities=24% Similarity=0.336 Sum_probs=136.6
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.++++.|+++++.+..++....+++|++|++++|.. ..++. +..+++|++|++++|.+..+|. ++.+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 567888888888888777666888888888888887 55555 5788888888888888887665 788888888888
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.++..+..+++|++|++++|.++.+ ..++.+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC----
Confidence 888888766788888888888888888887 468888888888888887 666665 788888888888888775
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILP 226 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (620)
.+..+.++++|+.|++++|.....+
T Consensus 192 ------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ------CChhhccCCCCCEEECcCCcccCCc
Confidence 2245778888888888887654433
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=7.3e-17 Score=158.09 Aligned_cols=183 Identities=17% Similarity=0.127 Sum_probs=157.0
Q ss_pred cchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh
Q 007039 25 ADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102 (620)
Q Consensus 25 ~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 102 (620)
.+...++. +++++++.|++++|.+..++. ..++++|++|++++|.+ ..++.. ..+++|++|++++|.+..+|.
T Consensus 20 ~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~--~~l~~L~~L~Ls~N~l~~l~~ 94 (290)
T 1p9a_G 20 RNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVD--GTLPVLGTLDLSHNQLQSLPL 94 (290)
T ss_dssp SCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEECC--SCCTTCCEEECCSSCCSSCCC
T ss_pred CCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccCC--CCCCcCCEEECCCCcCCcCch
Confidence 44444443 457899999999999977753 33899999999999998 556553 689999999999999999999
Q ss_pred hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcC
Q 007039 103 SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179 (620)
Q Consensus 103 ~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~ 179 (620)
.+..+++|++|++++|.+.. + ..|.++++|++|++++|.++.+|.. +..+++|++|++++|+ +..+|..++.++++
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLEN 173 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTT
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCC
Confidence 99999999999999999988 4 7799999999999999999988766 5789999999999998 88999887889999
Q ss_pred CcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 180 LEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
|++|++++|.+. ..+..+....+|+.+++++|..
T Consensus 174 L~~L~L~~N~l~---------~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 174 LDTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCEEECCCCcCC---------ccChhhcccccCCeEEeCCCCc
Confidence 999999999886 2345566777999999998864
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=2.4e-16 Score=169.70 Aligned_cols=246 Identities=16% Similarity=0.062 Sum_probs=175.7
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 103 (620)
......+|. .++++++.|++++|.+..+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.+..+|.
T Consensus 49 ~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~~l~~- 118 (622)
T 3g06_A 49 ESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPA- 118 (622)
T ss_dssp SSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCC--SCCCC----CCTTCCEEEECSCCCCCCCC-
T ss_pred CCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcC--CcCCC----CCCCCCEEECcCCcCCCCCC-
Confidence 344444443 456899999999999998887 689999999999998 56775 68999999999999999987
Q ss_pred hhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcE
Q 007039 104 LGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE 182 (620)
Q Consensus 104 ~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~ 182 (620)
.+.+|++|++++|.+.. |.. +++|++|++++|.++.+|. .+.+|+.|++++|. +..+| ..+++|+.
T Consensus 119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L~~ 185 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGLQE 185 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTCCE
T ss_pred --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCCcE
Confidence 67899999999999888 543 5899999999999999886 35789999999988 77787 45789999
Q ss_pred EEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEE
Q 007039 183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLM 262 (620)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (620)
|++++|.+... . ...++|+.|++++|....++.. .++|+.|+++.+..... | ..+++|+.|
T Consensus 186 L~Ls~N~l~~l----------~--~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~l---p--~~l~~L~~L 246 (622)
T 3g06_A 186 LSVSDNQLASL----------P--TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSL---P--VLPSELKEL 246 (622)
T ss_dssp EECCSSCCSCC----------C--CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCC---C--CCCTTCCEE
T ss_pred EECCCCCCCCC----------C--CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcC---C--CCCCcCcEE
Confidence 99999987621 1 1247899999999988877753 26788888765543322 1 334566666
Q ss_pred EEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCC
Q 007039 263 MLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS 322 (620)
Q Consensus 263 ~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 322 (620)
+++++ .+...+. .+++|+.|++.++.-. .++.. +..+++|+.|++++++
T Consensus 247 ~Ls~N----~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~---l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 247 MVSGN----RLTSLPM---LPSGLLSLSVYRNQLT-RLPES---LIHLSSETTVNLEGNP 295 (622)
T ss_dssp ECCSS----CCSCCCC---CCTTCCEEECCSSCCC-SCCGG---GGGSCTTCEEECCSCC
T ss_pred ECCCC----CCCcCCc---ccccCcEEeCCCCCCC-cCCHH---HhhccccCEEEecCCC
Confidence 66662 2211111 2345555555544322 22221 2345555555555553
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.7e-16 Score=152.38 Aligned_cols=174 Identities=22% Similarity=0.288 Sum_probs=142.3
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEcc
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLD 116 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~ 116 (620)
..++++++++.+..+|.... ++++.|++++|.+ ..++...+.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678889998888886543 6899999999987 5555555688999999999999988765 457889999999999
Q ss_pred CCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 117 WCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 117 ~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+.++++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999887 4 6788999999999999999988766 5789999999999987 7788876688999999999999887622
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
....+.++++|+.|++++|...
T Consensus 171 --------~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 --------PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------CTTTTTTCTTCCEEECCSCCBC
T ss_pred --------CHHHHhCCCCCCEEEeeCCcee
Confidence 2246778888999999888754
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=9.4e-18 Score=167.09 Aligned_cols=209 Identities=17% Similarity=0.148 Sum_probs=166.0
Q ss_pred cCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEE
Q 007039 36 QKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 113 (620)
.+++++|++++|.+..++. ..++++|++|++++|.+ ..+++ +..+++|++|++++|.+..++ ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC--EEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC--Ccchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 4589999999999988764 33899999999999988 44444 689999999999999987766 34899999
Q ss_pred EccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHH-hCCcCCcEEEcCCCcc
Q 007039 114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVI-SKLSQLEELYMGNGFS 190 (620)
Q Consensus 114 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l-~~l~~L~~L~l~~~~~ 190 (620)
++++|.+.. +. ..+++|++|++++|.++.++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcC
Confidence 999999887 43 247899999999999998754 68889999999999998 566544334 5799999999999987
Q ss_pred ccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
... .....+++|++|++++|....++..+.. ++|+.|++..+..... .+.+..+++|+.++++++
T Consensus 182 ~~~----------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 182 YDV----------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CEE----------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTC
T ss_pred ccc----------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--hhHhhcCCCCCEEEccCC
Confidence 622 3334588999999999999888887655 8899998866543321 122556677888888773
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=2.7e-17 Score=156.72 Aligned_cols=198 Identities=13% Similarity=0.199 Sum_probs=152.8
Q ss_pred hhhhhhccccCCcEEEEccCCCCcCCCCc-C-CCCCccEEEcccCC-CCCcccchHHHhcCCCCcEEEcCC-CCCCCCh-
Q 007039 27 LEKKMEETIQKDPIAISLPHRDIQELPER-L-QCPNLQLFLLYTEG-NGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP- 101 (620)
Q Consensus 27 ~~~~~~~~~~~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp- 101 (620)
...+|. ++.+++.|+++++.+..++.. . ++++|++|++++|. . ..++...|.++++|++|++++ |.+..+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 444454 577899999999999887763 2 88999999999986 5 667766678899999999998 8888876
Q ss_pred hhhhcccCCcEEEccCCCCCChhhhcCCCCCC---EEecCCC-CCCCCChh-ccCCCCCC-EEeCCCCccccccchHHHh
Q 007039 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLE---ILSLAYS-NINQLPVE-IGQLTRLQ-LLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~~~~~p~~~l~ 175 (620)
..|.++++|++|++++|.+...+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|. +..+|..++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC
Confidence 46788999999999999888733378888887 9999999 88888764 78899999 99999887 6788876555
Q ss_pred CCcCCcEEEcCCCc-cccccccCCCCcchhhhcCC-CCCCEEEeecCCCCCCCCcccccCceEEEE
Q 007039 176 KLSQLEELYMGNGF-SGWEKVEGGSNASLVELERL-TELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 176 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
. ++|++|++++|. +.. .....++++ ++|+.|++++|....++.. .-++|+.|.+
T Consensus 178 ~-~~L~~L~L~~n~~l~~--------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTV--------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp T-CEEEEEECTTCTTCCE--------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred C-CCCCEEEcCCCCCccc--------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 5 889999999884 541 122456777 8899999998887777665 2245555544
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=5.2e-16 Score=148.88 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=142.0
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 101 (620)
+.+...++. .++..++.|+++++.+..++.. .++++|++|++++|.+ ..++...+..+++|++|++++|.+..+|
T Consensus 23 ~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 23 GKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccC
Confidence 344445454 4678899999999999877653 3899999999999998 5666666789999999999999999886
Q ss_pred -hhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCC
Q 007039 102 -SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (620)
Q Consensus 102 -~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l 177 (620)
..++.+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++|. +..++...+.++
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 178 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCC
Confidence 567899999999999999988 4 557999999999999999999887 58999999999999998 778887668999
Q ss_pred cCCcEEEcCCCccc
Q 007039 178 SQLEELYMGNGFSG 191 (620)
Q Consensus 178 ~~L~~L~l~~~~~~ 191 (620)
++|++|++++|.+.
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 99999999999876
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=9e-17 Score=169.44 Aligned_cols=209 Identities=18% Similarity=0.143 Sum_probs=163.3
Q ss_pred cCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEE
Q 007039 36 QKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 113 (620)
.++++.|++++|.+..+++ ..++++|++|++++|.+ ...++ +..+++|++|++++|.+..+|. .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC--EEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC--CCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 3479999999999987764 33899999999999987 44444 6889999999999999887764 3899999
Q ss_pred EccCCCCCC-hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHh-CCcCCcEEEcCCCcc
Q 007039 114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-KLSQLEELYMGNGFS 190 (620)
Q Consensus 114 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~-~l~~L~~L~l~~~~~ 190 (620)
++++|.+.. +. ..+++|++|++++|.+..+ |..++.+++|++|++++|......|.. +. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH-HhhhCCcccEEecCCCcc
Confidence 999999888 43 2468999999999999876 557889999999999999843334544 54 899999999999988
Q ss_pred ccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
... .....+++|+.|++++|....++..+.. ++|+.|+++.+..... ++.+..+++|+.+++.++
T Consensus 182 ~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 182 YDV----------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEE----------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTC
T ss_pred ccc----------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc--chhhccCCCCCEEEcCCC
Confidence 622 3344688999999999998888887655 8888888866543321 112556677777777773
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1.1e-15 Score=149.86 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=151.2
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~ 118 (620)
+.++.+..+.+..+....++++|+.|++++|.. ..++. +..+++|++|++++|.+..++. +.++++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 444556666666655555789999999999987 55654 5789999999999999999887 999999999999999
Q ss_pred CCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCC
Q 007039 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG 198 (620)
Q Consensus 119 ~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 198 (620)
.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++. +.++++|++|++++|.+..
T Consensus 101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~------ 170 (291)
T 1h6t_A 101 KVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD------ 170 (291)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC------
T ss_pred cCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc------
Confidence 9998767999999999999999999885 68999999999999998 677744 8999999999999998761
Q ss_pred CCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeC
Q 007039 199 SNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG 242 (620)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 242 (620)
+..+.++++|+.|++++|....++. +.. ++|+.|++..+
T Consensus 171 ----~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 171 ----IVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ----CGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred ----chhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence 2238899999999999998776653 233 66666666443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=2.2e-16 Score=150.34 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=119.7
Q ss_pred CcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCC-CCCChh-hhhcccCCcEEEccC-CCCCC-h-
Q 007039 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPS-SLGRLINLQTLCLDW-CELAD-I- 123 (620)
Q Consensus 49 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~~~~l~~L~~L~L~~-~~~~~-~- 123 (620)
+..+|. -.+++++|++++|.+ ..++...|..+++|++|++++|. +..++. .+.++++|++|++++ |.+.. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 666666 234888999998887 66776667888999999999996 877764 788889999999988 77877 3
Q ss_pred hhhcCCCCCCEEecCCCCCCCCChhccCCCCCC---EEeCCCCccccccchHHHhCCcCCc-EEEcCCCccccccccCCC
Q 007039 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ---LLDLSNCWWLEVIAPNVISKLSQLE-ELYMGNGFSGWEKVEGGS 199 (620)
Q Consensus 124 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~p~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 199 (620)
..|..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|...+.++++|+ +|++++|.+.. .+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~---- 172 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQ---- 172 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-EC----
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cC----
Confidence 678888999999999998888886 78888887 8999888337888877678888888 88888877651 11
Q ss_pred CcchhhhcCCCCCCEEEeecC
Q 007039 200 NASLVELERLTELTTLEIEVP 220 (620)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~~ 220 (620)
...+.. ++|+.|++++|
T Consensus 173 ---~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 173 ---GYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp ---TTTTTT-CEEEEEECTTC
T ss_pred ---HhhcCC-CCCCEEEcCCC
Confidence 112222 56666666666
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.1e-15 Score=164.26 Aligned_cols=173 Identities=24% Similarity=0.327 Sum_probs=151.5
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
+.+++.|+++++.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.+..+| .+..+++|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 778999999999999888777999999999999987 55665 689999999999999998887 5889999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+..++.+..+++|+.|++++|.+..+ ..++.+++|+.|++++|. +..+++ +..+++|+.|++++|.+.
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~---- 188 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 188 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC----
Confidence 999998877799999999999999999988 578999999999999998 677766 899999999999999876
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (620)
.+..+..+++|+.|++++|.....|.
T Consensus 189 ------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 ------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23568899999999999887655443
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.5e-16 Score=165.98 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=127.8
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
.+++|++|++++|.+ ..+++..+..+++|++|++++|.+...++ ++.+++|++|++++|.+.... ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEE
Confidence 456899999999988 55665556899999999999999887665 889999999999999877621 238999999
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhc-CCCCCCEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTL 215 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 215 (620)
+++|.+..+|. ..+++|++|++++|. +..+++..++.+++|++|++++|.+... .+..+. ++++|+.|
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEE
Confidence 99999988765 357899999999998 6666554488999999999999988632 234554 78899999
Q ss_pred EeecCCCCCCCCcccccCceEEEE
Q 007039 216 EIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
++++|....++.....++|+.|++
T Consensus 175 ~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 175 NLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEEC
T ss_pred ecCCCccccccccccCCCCCEEEC
Confidence 999988765544322244444444
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=9e-17 Score=161.63 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=124.1
Q ss_pred CCcEEEEccCCCCcCCCCcC-CC--CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC--ChhhhhcccCCc
Q 007039 37 KDPIAISLPHRDIQELPERL-QC--PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINLQ 111 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~~~~l~~L~ 111 (620)
...++++++++.+. +... .+ ++++.|++.++.. ...+..+ ..+++|++|++++|.+.. +|..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM--DQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE--CSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccc--cccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34667777766553 1111 33 6677777777665 2222222 457777777777776653 666677777777
Q ss_pred EEEccCCCCCC--hhhhcCCCCCCEEecCCC-CCC--CCChhccCCCCCCEEeCCCCccccc--cchHHHhCCc-CCcEE
Q 007039 112 TLCLDWCELAD--IAAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNCWWLEV--IAPNVISKLS-QLEEL 183 (620)
Q Consensus 112 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~-~L~~L 183 (620)
+|++++|.+.+ +..++++++|++|++++| .++ .+|..+.++++|++|++++|..+.. ++. .+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEE
Confidence 77777777664 566777777777777777 566 3566667777777777777722443 233 366677 77777
Q ss_pred EcCCCc--cccccccCCCCcchhhhcCCCCCCEEEeecCC-CC-CCCCcccc-cCceEEEEEeCCCCCCCCCcccccccc
Q 007039 184 YMGNGF--SGWEKVEGGSNASLVELERLTELTTLEIEVPD-AE-ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEA 258 (620)
Q Consensus 184 ~l~~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (620)
++++|. +. +......++++++|++|++++|. .. ..+..+.. ++|+.|++..+..........+..+++
T Consensus 201 ~l~~~~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 201 NLSGYRKNLQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp ECCSCGGGSC-------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred EeCCCcccCC-------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 777763 22 11233445667777777777665 22 22222222 455555553332111111112444555
Q ss_pred ccEEEEec
Q 007039 259 SRLMMLKG 266 (620)
Q Consensus 259 L~~L~l~~ 266 (620)
|+.|++++
T Consensus 274 L~~L~l~~ 281 (336)
T 2ast_B 274 LKTLQVFG 281 (336)
T ss_dssp CCEEECTT
T ss_pred CCEEeccC
Confidence 66666655
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=4.1e-16 Score=150.40 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=141.3
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+++.+.+.++.+..++....+++|++|++++|.+ ..++ . +..+++|++|++++|.+..++. +.++++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 445667778888888777555889999999999987 5666 3 5789999999999999999887 889999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.+.+.+.. .+|++|++++|.++.+| .+.++++|++|++++|. +..++. +..+++|++|++++|.+..
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~--- 164 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN--- 164 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB---
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc---
Confidence 9999888433444 99999999999999886 68999999999999988 777764 8899999999999998761
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILP 226 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (620)
...+.++++|+.|++++|.....+
T Consensus 165 -------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 -------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred -------hHHhccCCCCCEEeCCCCcccCCc
Confidence 156788899999999988755443
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.1e-15 Score=140.64 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=102.8
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCE
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 134 (620)
++++|++|++++|.+ ..++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 566777777777766 4555 2 467777777777777665554 46677777777777777665 566777777777
Q ss_pred EecCCCCCCC-CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCC
Q 007039 135 LSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT 213 (620)
Q Consensus 135 L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 213 (620)
|++++|.+.. .|..++++++|++|++++|..++.+|. +..+++|++|++++|.+. .+..+.++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~----------~~~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH----------DYRGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC----------CCTTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc----------ChHHhccCCCCC
Confidence 7777777763 566677777777777777765666663 677777777777777665 123566777777
Q ss_pred EEEeecCCCC
Q 007039 214 TLEIEVPDAE 223 (620)
Q Consensus 214 ~L~l~~~~~~ 223 (620)
.|++++|..+
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 7777777643
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2e-15 Score=139.00 Aligned_cols=148 Identities=19% Similarity=0.257 Sum_probs=112.4
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~L~ 114 (620)
.+++++|+++++.+..++....+++|++|++++|.. ..++ . +..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567888888888888777555788888888888854 4443 2 5778888888888888765 566777888888888
Q ss_pred ccCCCCCC--hhhhcCCCCCCEEecCCCC-CCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELAD--IAAIGQLKKLEILSLAYSN-INQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++|.+.+ +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 88888775 6778888888888888886 77776 67888888888888877 666663 788888888888877654
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=5e-15 Score=139.66 Aligned_cols=151 Identities=22% Similarity=0.265 Sum_probs=129.1
Q ss_pred CCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L 115 (620)
...+.++.+++.+..+|... .++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeCCEeEccCCCcCccCCCC-CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 34567888888888888654 38899999999988 55555556889999999999999988874 5689999999999
Q ss_pred cCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 116 DWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 116 ~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|.+.. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999887 4 56789999999999999999999999999999999999987 78888776889999999999998775
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=151.47 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=153.3
Q ss_pred cCCcEEEEccCCCCc-CCCCc---CCCCCccEEEcccCCCCCcccchHHHhcC-----CCCcEEEcCCCCCCCCh-hhhh
Q 007039 36 QKDPIAISLPHRDIQ-ELPER---LQCPNLQLFLLYTEGNGPMQVSDHFFEGM-----EGLKVLQFPGIGSSSLP-SSLG 105 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~lp-~~~~ 105 (620)
.+++++|++++|.+. .+|.. ..+++|++|++++|.+ ..+|.. +..+ ++|++|++++|.+..++ ..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW--ATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC--SSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC--cchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 688999999999996 45553 4899999999999998 444644 4555 99999999999998876 7899
Q ss_pred cccCCcEEEccCCCCCC----hhhh--cCCCCCCEEecCCCCCCCCC---hh-ccCCCCCCEEeCCCCccccc-cchHHH
Q 007039 106 RLINLQTLCLDWCELAD----IAAI--GQLKKLEILSLAYSNINQLP---VE-IGQLTRLQLLDLSNCWWLEV-IAPNVI 174 (620)
Q Consensus 106 ~l~~L~~L~L~~~~~~~----~~~i--~~L~~L~~L~l~~~~l~~lp---~~-i~~l~~L~~L~l~~~~~~~~-~p~~~l 174 (620)
++++|++|++++|.+.. +..+ +++++|++|++++|.++.+| .. +.++++|++|++++|. +.. .|...+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh
Confidence 99999999999999653 3445 89999999999999998554 23 4578999999999998 554 433336
Q ss_pred hCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCC
Q 007039 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGD 243 (620)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~ 243 (620)
..+++|++|++++|.+. . .+..+. ++|++|++++|....+|. +.. ++|+.|++....
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~--------ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-Q--------VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCTTCCEEECTTSCCS-S--------CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhcCCCCEEECCCCccC-h--------hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 77899999999999886 1 122333 789999999999988866 444 889988885443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.4e-15 Score=139.77 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=120.1
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~ 118 (620)
+.+...++.+..+|... .++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .+.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666666666433 45788888888877 56666666788888888888888887764 4578888888888888
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. + ..+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 8777 4 4567888888888888888877665 6778888888888877 66777766778888888888887654
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
..+++|+.|+++.+.
T Consensus 162 -----------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 162 -----------CTCPGIRYLSEWINK 176 (208)
T ss_dssp -----------CCTTTTHHHHHHHHH
T ss_pred -----------cCCCCHHHHHHHHHh
Confidence 234456666666554
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=154.48 Aligned_cols=179 Identities=13% Similarity=0.028 Sum_probs=93.6
Q ss_pred CCCCccEEEcccCCCCCcccchHHH-hcCCCCcEEEcCCCCCCCC-h----hhhhcccCCcEEEccCCCCCC--hhhhcC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSL-P----SSLGRLINLQTLCLDWCELAD--IAAIGQ 128 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~l-p----~~~~~l~~L~~L~L~~~~~~~--~~~i~~ 128 (620)
.+++|++|++++|.. ....|..++ ..+++|++|++++|.+... + ..+..+++|++|++++|.+.. +..++.
T Consensus 89 ~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 344566666666655 333333322 5566666666666665531 1 223356666666666666554 355666
Q ss_pred CCCCCEEecCCCCCCC---CC--hhccCCCCCCEEeCCCCccccccchH---HHhCCcCCcEEEcCCCccccccccCCCC
Q 007039 129 LKKLEILSLAYSNINQ---LP--VEIGQLTRLQLLDLSNCWWLEVIAPN---VISKLSQLEELYMGNGFSGWEKVEGGSN 200 (620)
Q Consensus 129 L~~L~~L~l~~~~l~~---lp--~~i~~l~~L~~L~l~~~~~~~~~p~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 200 (620)
+++|++|++++|.+.. ++ ..++.+++|++|++++|. ++.++.. .+..+++|++|++++|.+....+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----- 241 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVN----- 241 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-----
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccch-----
Confidence 6666666666665432 22 123456666666666665 4433321 24556666666666666542111
Q ss_pred cchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCC
Q 007039 201 ASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGD 243 (620)
Q Consensus 201 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 243 (620)
..+..+..+++|++|++++|....+|..+. ++|+.|+++.+.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~ 283 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNR 283 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCC
T ss_pred hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCc
Confidence 111222223566666666666655555432 455555554443
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=7e-15 Score=137.67 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=105.0
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
+.++.+++.+..+|.... ++++.|++++|.+ ..++...|..+++|++|++++|.+..+ |..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456677777777765432 5777788877776 556555567777788888887777765 567777777888888777
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
.+.. + ..|..+++|++|++++|.++.+ |..+..+++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776 4 4467777777787777777766 4457777777777777776 66666655677777777777777654
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=9.1e-15 Score=136.89 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=117.1
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCccc-chHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQV-SDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~ 117 (620)
+.++++++.+..+|... .+.+++|++++|.+ ..+ +..+|..+++|++|++++|.+..++. .|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888888877643 34568889988887 444 44556788899999999988887654 788888999999999
Q ss_pred CCCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 118 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
|.+.. +..|..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88877 35688889999999999888876 5668888889999998887 66665555888888888888888765
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.1e-14 Score=156.63 Aligned_cols=184 Identities=21% Similarity=0.258 Sum_probs=152.2
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
.+.++.+..+.+..+.....+++|+.|++.+|.+ ..++. +..+++|++|++++|.+..++. +.++++|++|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3555666777776665556889999999999987 55664 5889999999999999999887 89999999999999
Q ss_pred CCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccC
Q 007039 118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG 197 (620)
Q Consensus 118 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (620)
|.+..++.+..+++|++|++++|.+..+| .+..+++|+.|++++|. +..++. +..+++|+.|++++|.+..
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~----- 167 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD----- 167 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC-----
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC-----
Confidence 99988778999999999999999999885 68999999999999998 677744 8999999999999998761
Q ss_pred CCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEe
Q 007039 198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRI 241 (620)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~ 241 (620)
. ..+..+++|+.|++++|.+..++. +.. ++|+.|.+..
T Consensus 168 ----~-~~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 168 ----I-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFS 206 (605)
T ss_dssp ----C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCS
T ss_pred ----c-hhhccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccC
Confidence 1 228899999999999998776643 333 6677776643
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=5.5e-15 Score=149.16 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=69.2
Q ss_pred ccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcE-EEcCCCCCCCC-hhhhhcccCC
Q 007039 35 IQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKV-LQFPGIGSSSL-PSSLGRLINL 110 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~-L~l~~~~~~~l-p~~~~~l~~L 110 (620)
++.++++|++++|.+..+++. .++++|++|++++|.+ ...++..+|.+++.++. +.+.+|++..+ |..|.++++|
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-CCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 344555555555555555432 1455555555555544 23344444445544443 33334445444 2344555555
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCC-CCCCCChh-ccCC-CCCCEEeCCCCccccccchHHHhCCcCCcEEEc
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPVE-IGQL-TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~l-~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 185 (620)
++|++++|.+.. + ..+....++.+|++.++ .+..+|.. +..+ ..++.|++++|. ++.++.. .....+|+++++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~f~~~~L~~l~l 184 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-AFNGTQLDELNL 184 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-SSTTEEEEEEEC
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-hccccchhHHhh
Confidence 555555555444 2 23333444445555443 44444432 2222 235555555554 4445444 223344555555
Q ss_pred CC
Q 007039 186 GN 187 (620)
Q Consensus 186 ~~ 187 (620)
.+
T Consensus 185 ~~ 186 (350)
T 4ay9_X 185 SD 186 (350)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.6e-14 Score=139.30 Aligned_cols=147 Identities=21% Similarity=0.214 Sum_probs=131.7
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
..++++.|+++++.+..++....+++|++|++++|.+ ..++. +..+++|++|++++|.+..+|.... .+|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 3788999999999999998666999999999999988 66666 6899999999999999999886443 9999999
Q ss_pred ccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++|.+..++.+..+++|++|++++|.++.+| .++.+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 99999998667999999999999999999997 79999999999999998 666633 899999999999998876
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=146.80 Aligned_cols=172 Identities=19% Similarity=0.184 Sum_probs=116.5
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHh-cCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~ 117 (620)
+.++.+++.+..+|... .+.++.|++++|.+ ..++...+. .+++|++|++++|.+..++ ..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777777766533 24577777777776 555555555 7777888888777777665 4577777788888887
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHH---hCCcCCcEEEcCCCccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVI---SKLSQLEELYMGNGFSG 191 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l---~~l~~L~~L~l~~~~~~ 191 (620)
|.+.. + ..|..+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77776 3 4577777888888887777765 4567777788888887776 667776644 56777788887777765
Q ss_pred cccccCCCCcchhhhcCCCC--CCEEEeecCCCC
Q 007039 192 WEKVEGGSNASLVELERLTE--LTTLEIEVPDAE 223 (620)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 223 (620)
. .....+..++. ++.|++++|...
T Consensus 177 ~--------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 K--------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C--------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred c--------cCHHHhhhccHhhcceEEecCCCcc
Confidence 1 12245555555 367777776543
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=8.6e-15 Score=147.11 Aligned_cols=195 Identities=17% Similarity=0.246 Sum_probs=155.8
Q ss_pred CCcEEEEccCCCCcCCC-CcCCCCCccEEEcccCCCCCcc-cchHHHhcCCCCcEEEcCCCCCC-CChhhhhcccCCcEE
Q 007039 37 KDPIAISLPHRDIQELP-ERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINLQTL 113 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L 113 (620)
.+++.+.+.++.+.... ...++++|++|++++|.. ... ++. .+..+++|++|++++|.+. ..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI-EVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE-CHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCc-CHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 78999999999886554 344899999999999986 333 444 4689999999999999987 467889999999999
Q ss_pred EccCC-CCCC---hhhhcCCCCCCEEecCCC-CCCC--CChhccCCC-CCCEEeCCCCc-cc--cccchHHHhCCcCCcE
Q 007039 114 CLDWC-ELAD---IAAIGQLKKLEILSLAYS-NINQ--LPVEIGQLT-RLQLLDLSNCW-WL--EVIAPNVISKLSQLEE 182 (620)
Q Consensus 114 ~L~~~-~~~~---~~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~~--~~~p~~~l~~l~~L~~ 182 (620)
++++| .+.+ +..+.++++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..++.. +.++++|++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCE
Confidence 99999 5774 466889999999999999 8884 778889999 99999999995 23 344543 789999999
Q ss_pred EEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCC---cccc-cCceEEEEEeC
Q 007039 183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP---DFVS-VELQRYKIRIG 242 (620)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~-~~L~~L~l~~~ 242 (620)
|++++|... ....+..+.++++|++|++++|. ...+. .+.. ++|+.|++..+
T Consensus 227 L~l~~~~~l-------~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVML-------KNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTC-------CGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcC-------CHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999832 13455678899999999999986 11122 2333 89999998644
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.7e-14 Score=145.64 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=56.4
Q ss_pred EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--h-hhhcCCCCCCE-Eec
Q 007039 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--I-AAIGQLKKLEI-LSL 137 (620)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~-~~i~~L~~L~~-L~l 137 (620)
+++.+++.. .++|..+ .+++++|++++|+++.+|. .|.++++|++|+|++|.+.+ + ..|.++++|++ +.+
T Consensus 13 ~v~C~~~~L--t~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKV--TEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTC--CSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCC--CccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 444444443 4444432 2345555555555555543 34555555555555555433 1 34455555443 333
Q ss_pred CCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 138 AYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 138 ~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
.++.+..+| ..+..+++|++|++++|. +..+|...+....++..|++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEES
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcc
Confidence 334555442 334555555555555554 4444443233444444555433
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=1.9e-15 Score=154.89 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=130.2
Q ss_pred cCCcEEEEccCCCCcC-----CCC-cCCCCCccEEEcccCCC--CCcccchHH------HhcCCCCcEEEcCCCCCCC--
Q 007039 36 QKDPIAISLPHRDIQE-----LPE-RLQCPNLQLFLLYTEGN--GPMQVSDHF------FEGMEGLKVLQFPGIGSSS-- 99 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~-----l~~-~~~~~~Lr~L~l~~~~~--~~~~~~~~~------~~~l~~Lr~L~l~~~~~~~-- 99 (620)
.+++++|++++|.+.. +.. ..++++|++|++++|.. ....+|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5678999999987743 222 22788999999988754 123445443 3678899999999998875
Q ss_pred ---ChhhhhcccCCcEEEccCCCCCC--hhh----hcCC---------CCCCEEecCCCCCC--CCC---hhccCCCCCC
Q 007039 100 ---LPSSLGRLINLQTLCLDWCELAD--IAA----IGQL---------KKLEILSLAYSNIN--QLP---VEIGQLTRLQ 156 (620)
Q Consensus 100 ---lp~~~~~l~~L~~L~L~~~~~~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~ 156 (620)
+|..+.++++|++|++++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 67788888999999999998764 233 3334 88999999998876 444 4677888999
Q ss_pred EEeCCCCccccc-----cchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 157 LLDLSNCWWLEV-----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 157 ~L~l~~~~~~~~-----~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
+|++++|. +.. +.+..+.++++|++|++++|.+.... .......+.++++|+.|++++|...
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCCc
Confidence 99999886 441 22213778889999999888764110 0123456778888999999888754
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=3.5e-14 Score=132.91 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=120.1
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
+.+++.++.. ..+|..+ .+.+++|++++|.+..++. .+..+++|++|++++|.+.. +..|.++++|++|+++
T Consensus 14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 5788888876 6777654 3789999999999988764 78889999999999999887 5789999999999999
Q ss_pred CCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEe
Q 007039 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (620)
Q Consensus 139 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (620)
+|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+... ....+..+++|+.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI--------AKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEE--------CHHHHhCCCCCCEEEe
Confidence 9999988876 5789999999999988 7777666688999999999999887622 2245777888899988
Q ss_pred ecCCC
Q 007039 218 EVPDA 222 (620)
Q Consensus 218 ~~~~~ 222 (620)
++|..
T Consensus 160 ~~N~~ 164 (220)
T 2v9t_B 160 AQNPF 164 (220)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 87753
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=7.5e-14 Score=148.34 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=135.6
Q ss_pred CCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEcc
Q 007039 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 116 (620)
.+++.|+++++.+..+|... .++|++|++++|.+ ..+| ..+++|++|++++|.+..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 47999999999998888754 48899999999988 5777 347899999999999988888 665 89999999
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
+|.+.. |. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|++++|.+.. .+
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~-lp 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES-LP 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS-CC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc-hh
Confidence 999888 44 68999999999999999886 67899999999988 677887 55 899999999988761 11
Q ss_pred cCCCCcchhhh-cCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEE
Q 007039 196 EGGSNASLVEL-ERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (620)
Q Consensus 196 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (620)
.....+ .....|+.|++++|.+..+|..+.. ++|+.|++.
T Consensus 197 -----~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 197 -----AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp -----CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred -----hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 100011 1112238999999888888876544 555555553
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=143.31 Aligned_cols=190 Identities=16% Similarity=0.088 Sum_probs=145.8
Q ss_pred cCCcEEEEccCCCCcCC-CCc---CCCCCccEEEcccCCCCCcccc---hHHHhcCCCCcEEEcCCCCCCCCh-hhhhcc
Q 007039 36 QKDPIAISLPHRDIQEL-PER---LQCPNLQLFLLYTEGNGPMQVS---DHFFEGMEGLKVLQFPGIGSSSLP-SSLGRL 107 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l-~~~---~~~~~Lr~L~l~~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l 107 (620)
.+++++|++++|.+... +.. .++++|++|++++|.+ ....+ ...+..+++|++|++++|.+..++ ..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSW-ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCC-SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccc-cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45699999999998543 333 5799999999999988 33322 222357999999999999998765 688999
Q ss_pred cCCcEEEccCCCCCC----h--hhhcCCCCCCEEecCCCCCCCCChh----ccCCCCCCEEeCCCCcccccc-chHHHhC
Q 007039 108 INLQTLCLDWCELAD----I--AAIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNCWWLEVI-APNVISK 176 (620)
Q Consensus 108 ~~L~~L~L~~~~~~~----~--~~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~-p~~~l~~ 176 (620)
++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +... |.. +..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHh
Confidence 999999999999653 1 2347899999999999999877653 5788999999999998 5554 654 566
Q ss_pred C---cCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEE
Q 007039 177 L---SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (620)
Q Consensus 177 l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (620)
+ ++|++|++++|.+... +..+. ++|++|++++|....++.. .. ++|+.|++.
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~l---------p~~~~--~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~L~ 302 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQV---------PKGLP--AKLRVLDLSSNRLNRAPQP-DELPEVDNLTLD 302 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSC---------CSCCC--SCCSCEECCSCCCCSCCCT-TSCCCCSCEECS
T ss_pred ccCcCcCCEEECCCCCCCch---------hhhhc--CCCCEEECCCCcCCCCchh-hhCCCccEEECc
Confidence 5 6999999999988721 12222 7899999999998876542 22 566666553
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.5e-14 Score=132.89 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=128.4
Q ss_pred cccCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L 110 (620)
.+++++++|+++++.+..++... ++++|++|++++|.+ ..++...|..+++|++|++++|.+..+|. .++++++|
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 45788999999999998887643 899999999999988 67777777899999999999999998875 47899999
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
++|++++|.+.. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|... +.+++|+.|++..
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHH
Confidence 999999999987 4 5689999999999999999988876 788999999999998632 4456788888777
Q ss_pred Cccccc
Q 007039 188 GFSGWE 193 (620)
Q Consensus 188 ~~~~~~ 193 (620)
+.+.+.
T Consensus 175 n~~~g~ 180 (208)
T 2o6s_A 175 NKHSGV 180 (208)
T ss_dssp HHCTTT
T ss_pred HhCCce
Confidence 776643
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=3.5e-14 Score=143.91 Aligned_cols=123 Identities=22% Similarity=0.245 Sum_probs=57.5
Q ss_pred EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhh-cccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLG-RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~-~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
+++++++.. ..+|..+ .+.+++|++++|.+..++. .+. ++.+|++|++++|.+.. +..|.++++|++|+++
T Consensus 22 ~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 444444444 3344322 2334555555555544432 233 44555555555555444 2344555555555555
Q ss_pred CCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 139 YSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 139 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+|.++.+|. .+..+++|++|++++|. +..+++..+.++++|++|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCC
Confidence 555554433 24445555555555544 34443333455555555555555443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=6.4e-14 Score=131.10 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=121.4
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh--hhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
++++++++.. ..+|..+ .+.+++|++++|.+..++ ..++++++|++|++++|.+.. + ..|.++++|++|++
T Consensus 14 ~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 5889998887 6677654 456789999999998874 358899999999999999887 3 58999999999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
++|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+... ....++.+++|+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEE
Confidence 99999988765 8889999999999988 6777655588999999999999987622 235678889999999
Q ss_pred eecCCC
Q 007039 217 IEVPDA 222 (620)
Q Consensus 217 l~~~~~ 222 (620)
+++|..
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 988763
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.9e-14 Score=146.06 Aligned_cols=182 Identities=11% Similarity=0.160 Sum_probs=103.1
Q ss_pred cCCcEEEEccCCCCcCCCC-----cC-CCC-CccEEEcccCCCCCcccchHHHhcC-----CCCcEEEcCCCCCCCC-hh
Q 007039 36 QKDPIAISLPHRDIQELPE-----RL-QCP-NLQLFLLYTEGNGPMQVSDHFFEGM-----EGLKVLQFPGIGSSSL-PS 102 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~-----~~-~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~l-p~ 102 (620)
.+++++|++++|.+...+. .. +++ +|++|++++|.+ .......+..+ +.|++|++++|.+... +.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4557777777777765542 22 566 677777777766 33322222332 7777777777776543 33
Q ss_pred h----hhcc-cCCcEEEccCCCCCC--hhh----hcCC-CCCCEEecCCCCCC-----CCChhccCCC-CCCEEeCCCCc
Q 007039 103 S----LGRL-INLQTLCLDWCELAD--IAA----IGQL-KKLEILSLAYSNIN-----QLPVEIGQLT-RLQLLDLSNCW 164 (620)
Q Consensus 103 ~----~~~l-~~L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~ 164 (620)
. +..+ ++|++|++++|.+.+ +.. +..+ ++|++|++++|.+. .++..+..++ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2 3333 677777777777654 222 3332 57777777777666 3344455554 77777777776
Q ss_pred cccccchHH----HhCC-cCCcEEEcCCCccccccccCCCCcchhhhcC-CCCCCEEEeecCCCCC
Q 007039 165 WLEVIAPNV----ISKL-SQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDAEI 224 (620)
Q Consensus 165 ~~~~~p~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~ 224 (620)
++..+... +... ++|++|++++|.+.... .......+.. .++|++|++++|....
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANLLGLKS----YAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC----HHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH----HHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 44444322 3333 47777777777665110 0112233444 3467777777666543
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=6.4e-15 Score=151.04 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=95.9
Q ss_pred CCCCccEEEcccCCCCCcccchH---HHhcCCCCcEEEcCCCCCCC----Chhhh-------hcccCCcEEEccCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDH---FFEGMEGLKVLQFPGIGSSS----LPSSL-------GRLINLQTLCLDWCELAD 122 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~---~~~~l~~Lr~L~l~~~~~~~----lp~~~-------~~l~~L~~L~L~~~~~~~ 122 (620)
.+++|++|++++|.+ ....+.. .+..+++|++|++++|.+.. +|..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEE-CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCC-CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 567788888877765 2221211 13467778888887765542 34433 567777777777777654
Q ss_pred ------hhhhcCCCCCCEEecCCCCCC-----CCChhccCC---------CCCCEEeCCCCccc-cccch--HHHhCCcC
Q 007039 123 ------IAAIGQLKKLEILSLAYSNIN-----QLPVEIGQL---------TRLQLLDLSNCWWL-EVIAP--NVISKLSQ 179 (620)
Q Consensus 123 ------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p~--~~l~~l~~ 179 (620)
+..+.++++|++|++++|.+. .++..+..+ ++|++|++++|... ..++. ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 245677777777777777665 233334344 77777777777622 22331 23566777
Q ss_pred CcEEEcCCCccccccccCCCCcchh-hhcCCCCCCEEEeecCCC
Q 007039 180 LEELYMGNGFSGWEKVEGGSNASLV-ELERLTELTTLEIEVPDA 222 (620)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 222 (620)
|++|++++|.+.... ...... .+.++++|+.|++++|..
T Consensus 189 L~~L~L~~n~l~~~g----~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEG----IEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CCEEECCSSCCCHHH----HHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred cCEEECcCCCCCHhH----HHHHHHHHhhcCCCccEEECcCCCC
Confidence 777777777654100 001222 566677777777776654
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.7e-13 Score=129.15 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=123.5
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
-..++++++.. ..+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.+.. + ..+..+++|++|++
T Consensus 21 ~~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 45788888776 7788754 48999999999999887 6778999999999999999887 4 56789999999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
++|.++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+... ....+.++++|+.|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLTHAY 165 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCCEEE
Confidence 99999988765 5889999999999988 7788877 78999999999999987621 124577889999999
Q ss_pred eecCCCC
Q 007039 217 IEVPDAE 223 (620)
Q Consensus 217 l~~~~~~ 223 (620)
+++|...
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 9888654
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=6.9e-14 Score=125.05 Aligned_cols=137 Identities=23% Similarity=0.188 Sum_probs=73.0
Q ss_pred CCCcEEEcCCCCCC--CChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCC-CChhccCCCCCCEEeCC
Q 007039 85 EGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~ 161 (620)
++|++|++++|.+. .+|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. +|..+.++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45555666655555 4555555556666666666555544455555666666666665554 45445556666666666
Q ss_pred CCccccccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCC
Q 007039 162 NCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (620)
Q Consensus 162 ~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (620)
+|. +..++. ..+..+++|++|++++|.+..... .....+..+++|+.|+++.+....+|.
T Consensus 104 ~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 104 GNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhccc
Confidence 654 444431 225556666666666555441100 001245556666666666655544443
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=6.7e-14 Score=125.12 Aligned_cols=130 Identities=20% Similarity=0.155 Sum_probs=85.4
Q ss_pred cCCcEEEEccCCCCc--CCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~ 111 (620)
++++++|++++|.+. .++... .+++|++|++++|.+ ..+ ..+..+++|++|++++|.+.. +|..+.++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--CCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--CCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 566777777777776 666554 667777777777766 333 224667777777777777665 566666677777
Q ss_pred EEEccCCCCCC-h--hhhcCCCCCCEEecCCCCCCCCCh----hccCCCCCCEEeCCCCccccccc
Q 007039 112 TLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 112 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p 170 (620)
+|++++|.+.. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|. ..++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 77777777665 3 566667777777777776666665 56666777777766665 44444
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=5.1e-14 Score=142.82 Aligned_cols=146 Identities=12% Similarity=0.155 Sum_probs=74.7
Q ss_pred EccCCCCcCC-CCcCCC-CCccEEEcccCCCCCcccch----HHHhcCC-CCcEEEcCCCCCCCC-hhhhhcc-----cC
Q 007039 43 SLPHRDIQEL-PERLQC-PNLQLFLLYTEGNGPMQVSD----HFFEGME-GLKVLQFPGIGSSSL-PSSLGRL-----IN 109 (620)
Q Consensus 43 ~l~~~~~~~l-~~~~~~-~~Lr~L~l~~~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~~~~l-p~~~~~l-----~~ 109 (620)
.++.+.+... +..... ++|++|++++|.+ ...+. ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3444555322 222232 3366666666665 33333 3345565 666666666666543 4444443 66
Q ss_pred CcEEEccCCCCCC--hhh----hcCC-CCCCEEecCCCCCCCCChh-----ccC-CCCCCEEeCCCCccccccchH----
Q 007039 110 LQTLCLDWCELAD--IAA----IGQL-KKLEILSLAYSNINQLPVE-----IGQ-LTRLQLLDLSNCWWLEVIAPN---- 172 (620)
Q Consensus 110 L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~l~~~~~~~~~p~~---- 172 (620)
|++|++++|.+.+ +.. +..+ ++|++|++++|.+...+.. +.. .++|++|++++|. ++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence 6666666666553 222 3333 5666666666666544321 223 2466666666665 3321111
Q ss_pred HHhCCc-CCcEEEcCCCccc
Q 007039 173 VISKLS-QLEELYMGNGFSG 191 (620)
Q Consensus 173 ~l~~l~-~L~~L~l~~~~~~ 191 (620)
.+...+ +|++|++++|.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGG
T ss_pred HHhcCCccccEeeecCCCCc
Confidence 133443 6666666666554
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=4.7e-13 Score=142.27 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=135.6
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
+.++++.|++++|.+..+| ..+++|++|++++|.+ ..+|. + .. +|++|++++|.+..+|. .+++|++|+
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEe
Confidence 4688999999999999888 5689999999999988 55777 3 33 99999999999999988 689999999
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCC-------cEEEcC
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL-------EELYMG 186 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L-------~~L~l~ 186 (620)
+++|.+.. |. .+++|++|++++|.++.+|. +. ++|++|++++|. +..+|. +.. +| +.|+++
T Consensus 147 Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 147 ADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECC
T ss_pred CCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecC
Confidence 99999988 44 68999999999999999998 66 999999999997 778887 443 67 999999
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCC
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI 224 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (620)
+|.+. ..+..+.++++|+.|++++|....
T Consensus 216 ~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 216 ENRIT---------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCC---------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCcce---------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99886 344567779999999999998643
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=2.4e-13 Score=118.84 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=79.4
Q ss_pred cCCcEEEEccCCCCc--CCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~ 111 (620)
++++++|+++++.+. .++... .+++|++|++++|.. ..+ ..+..+++|++|++++|.+.. +|..++++++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 455777777777776 566553 677777777777765 333 224667777777777777665 666666677777
Q ss_pred EEEccCCCCCC-h--hhhcCCCCCCEEecCCCCCCCCCh----hccCCCCCCEEeCC
Q 007039 112 TLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDLS 161 (620)
Q Consensus 112 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~ 161 (620)
+|++++|.+.+ + ..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777776665 3 566666666666666666666554 45666666666654
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.5e-13 Score=120.16 Aligned_cols=124 Identities=23% Similarity=0.281 Sum_probs=71.8
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
++++.|++++|......+|.. +..+++|++|++++|.+..+ ..++++++|++|++++|.+.. |..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 456666666665511244443 35566666666666666555 445666666666666666554 34445566666666
Q ss_pred cCCCCCCCCC--hhccCCCCCCEEeCCCCccccccch---HHHhCCcCCcEEEc
Q 007039 137 LAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAP---NVISKLSQLEELYM 185 (620)
Q Consensus 137 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~---~~l~~l~~L~~L~l 185 (620)
+++|.++.+| ..++.+++|++|++++|. +..++. ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 6666666543 456666666666666665 444444 33556666666554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.9e-13 Score=150.84 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=100.1
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCC--CcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNG--PMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~ 112 (620)
..+++++.+.++.+...+... ....|+.+.+.+.... ...++...+..++.|++|+|++|.+..+|..+.++.+|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 455888999888886655433 4444554444332210 1124555578899999999999999999988889999999
Q ss_pred EEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 113 LCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 113 L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
|+|++|.+.. |..|++|++|++|+|++|.++.+|..++++++|++|++++|. ++.+|.. ++++++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999888 788999999999999999999999999999999999999987 7889887 899999999999999887
Q ss_pred cc
Q 007039 192 WE 193 (620)
Q Consensus 192 ~~ 193 (620)
..
T Consensus 330 ~~ 331 (727)
T 4b8c_D 330 KQ 331 (727)
T ss_dssp SH
T ss_pred CC
Confidence 43
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=7.4e-13 Score=120.96 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=76.9
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCC
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY 139 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 139 (620)
++++++++.. ..+|..+ .+.|++|++++|.+..+|..+.++++|++|++++|.+.. +..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 3455555554 4455432 346666666666666666666666666666666666665 24566666666666666
Q ss_pred CCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 140 SNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 140 ~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
|.++.+|. .+..+++|++|++++|. +..+|...+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 66665543 46666666667666665 55666555666666666666666543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=8.4e-13 Score=120.63 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=53.4
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccch-HHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 117 (620)
+.++++++.+..+|... .+++++|++++|.+ ..++. .++..+++|++|++++|.+..+ |..++++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34455555554444322 11444455544444 22222 2234444444444444444443 33444444444444444
Q ss_pred CCCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCc
Q 007039 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 118 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 164 (620)
|.+.. +..|.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 44443 13344444444444444444422 3334444444444444443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=3.4e-13 Score=121.47 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCcEEEEccCCCCcCCCCcCCCC-CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhh-hcccCCcEEE
Q 007039 37 KDPIAISLPHRDIQELPERLQCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLC 114 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~-~~l~~L~~L~ 114 (620)
.+++.|++++|.+..++....+. +|++|++++|.+ ..++ . +..+++|++|++++|.+..+|..+ +.+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34455555555544443333222 444444444444 2221 1 244444444444444444443222 4444444444
Q ss_pred ccCCCCCC-hh--hhcCCCCCCEEecCCCCCCCCChh----ccCCCCCCEEeCCCC
Q 007039 115 LDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNC 163 (620)
Q Consensus 115 L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~ 163 (620)
+++|.+.+ +. .+..+++|++|++++|.+..+|.. ++.+++|++|++++|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 44444443 22 344444444444444444444432 444444444444443
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=7.5e-13 Score=119.19 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=114.2
Q ss_pred CCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-h-hhhcCCC
Q 007039 53 PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLK 130 (620)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~ 130 (620)
+...++++|+.|++++|.+ ..++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3444788999999999988 45654 333445999999999999888 678999999999999999988 5 4459999
Q ss_pred CCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccchH---HHhCCcCCcEEEcCCCccc
Q 007039 131 KLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPN---VISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 131 ~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~---~l~~l~~L~~L~l~~~~~~ 191 (620)
+|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. .+..+++|+.|+++++...
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999999987 79999999999999998 6777764 5889999999999887654
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=4.3e-12 Score=115.90 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=109.1
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh--hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEec
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS--SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL 137 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 137 (620)
++++++++.. ..+|..+ ...+++|++++|.+..++. .++++++|++|++++|.+.. +..|.++++|++|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 7899999987 7788755 3499999999999998875 38999999999999999987 578999999999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|.++.++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999977654 8899999999999998 66665555899999999999999886
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=3.9e-13 Score=148.31 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=111.9
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEE
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL 135 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 135 (620)
.+++|++|++++|.+ ..+|..++ .+++|++|+|++|.+..+|..++++++|++|+|++|.+.. |..|++|++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 889999999999998 68888875 8999999999999999999999999999999999999988 8899999999999
Q ss_pred ecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcC-CcEEEcCCCccc
Q 007039 136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ-LEELYMGNGFSG 191 (620)
Q Consensus 136 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~-L~~L~l~~~~~~ 191 (620)
+|++|.+..+|..++++++|++|++++|. +...++..+..+.. +..+++.+|.+.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 99999999999999999999999999998 55444443544321 223556666554
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=1.2e-11 Score=111.36 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=68.0
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~ 118 (620)
+.++..++.+..+|.. -.++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .++++++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4555566655555532 234566666666655 34444444556666666666666655543 3455666666666666
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 6555 2 3345566666666666655555544 2445566666665555
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.4e-11 Score=112.43 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=108.5
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~ 118 (620)
+.++++++.+..+|... .++|++|++++|.+ ..+|.. +..+++|++|++++|.+..++ ..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57889999998888654 46899999999998 678754 689999999999999999886 57999999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 166 (620)
.+.. +..|..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9987 46799999999999999999999875 788999999999998743
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.4e-11 Score=110.94 Aligned_cols=125 Identities=21% Similarity=0.291 Sum_probs=99.2
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
.+.+++.++.. ..+|..+ .++|++|++++|.+..+|. .++++++|++|++++|.+.. + ..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 46778887776 6667543 4788899999988887764 56788889999999888877 4 45788889999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 98888887765 5788889999998887 67787776678888888888888765
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=2.1e-11 Score=130.22 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=116.6
Q ss_pred CCCCccEEE-cccCCCCCcccchHH-----Hh--cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhc
Q 007039 57 QCPNLQLFL-LYTEGNGPMQVSDHF-----FE--GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIG 127 (620)
Q Consensus 57 ~~~~Lr~L~-l~~~~~~~~~~~~~~-----~~--~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~ 127 (620)
.+++|+.|+ +..+.. ..++... +. ....|++|++++|.+..+|. ++++++|++|++++|.+.. |..++
T Consensus 407 ~l~~L~~L~~l~~n~~--~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~ 483 (567)
T 1dce_A 407 YFSTLKAVDPMRAAYL--DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA 483 (567)
T ss_dssp HHHHHHHHCGGGHHHH--HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred HHHhcccCcchhhccc--chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh
Confidence 567888887 554432 2222100 01 12369999999999999997 9999999999999999988 88999
Q ss_pred CCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCcccccc--chHHHhCCcCCcEEEcCCCccccccccCCCCcchhh
Q 007039 128 QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI--APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVE 205 (620)
Q Consensus 128 ~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 205 (620)
.+++|++|++++|.++.+| .++++++|++|++++|. +..+ |.. ++++++|+.|++++|.+....+ ....-
T Consensus 484 ~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-----~~~~l 555 (567)
T 1dce_A 484 ALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG-----IQERL 555 (567)
T ss_dssp GCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS-----CTTHH
T ss_pred cCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc-----HHHHH
Confidence 9999999999999999998 89999999999999998 6777 555 8999999999999998863321 12223
Q ss_pred hcCCCCCCEEEe
Q 007039 206 LERLTELTTLEI 217 (620)
Q Consensus 206 l~~l~~L~~L~l 217 (620)
+..+++|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 445788888864
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=2.7e-13 Score=124.71 Aligned_cols=106 Identities=23% Similarity=0.272 Sum_probs=52.6
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
..+++|++|++++|.+..+| .+.++++|++|++++|.+.. |..+..+++|++|++++|.++.+| .++.+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 44555555555555554444 45555555555555555444 344444455555555555555544 3445555555555
Q ss_pred CCCccccccch-HHHhCCcCCcEEEcCCCcc
Q 007039 161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 161 ~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~ 190 (620)
++|. +..++. ..+..+++|++|++.+|.+
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 5544 333332 2244555555555555544
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=2e-11 Score=130.40 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=146.2
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCC-----------CCcccchHHHhcCCCCcEEE-cCCCCCCCChh
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGN-----------GPMQVSDHFFEGMEGLKVLQ-FPGIGSSSLPS 102 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~-----------~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp~ 102 (620)
.+.+++|++++|.+..+|... ++++|+.|++.+|.. .....++..+..+++|+.|+ ++.+.+..++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 345666777777777777655 777888888765530 01223334457889999998 66665443332
Q ss_pred ------hhhc--ccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHH
Q 007039 103 ------SLGR--LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (620)
Q Consensus 103 ------~~~~--l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l 174 (620)
.+.. ...|++|++++|.+..++.++.+++|++|++++|.++.+|..++++++|++|++++|. +..+| . +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-c
Confidence 1221 1369999999999998334999999999999999999999999999999999999998 77788 3 9
Q ss_pred hCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-----cCceEEE
Q 007039 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-----VELQRYK 238 (620)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~L~~L~ 238 (620)
+++++|++|++++|.+... ..+..++++++|+.|++++|.....++.... ++|+.|+
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~-------~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQS-------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTCSSCCEEECCSSCCCSS-------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcEEECCCCCCCCC-------CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9999999999999988621 1157899999999999999998877765422 6777764
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=3.4e-13 Score=124.01 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=118.2
Q ss_pred cEEEEccCC--CCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 39 PIAISLPHR--DIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 39 lr~L~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
++...+.+. .++.++... ++++|++|++++|.+ ..+| . +..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 455555544 445555444 899999999999987 5577 3 58899999999999999999998888999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccc---------hHHHhCCcCCcEEE
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIA---------PNVISKLSQLEELY 184 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p---------~~~l~~l~~L~~L~ 184 (620)
++|.+..++.+..+++|++|++++|.+..+|. .+..+++|++|++++|......| ...+..+++|+.|+
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999995578999999999999999998765 78999999999999997433322 23477888999886
Q ss_pred cCCCccc
Q 007039 185 MGNGFSG 191 (620)
Q Consensus 185 l~~~~~~ 191 (620)
++.+.
T Consensus 181 --~~~i~ 185 (198)
T 1ds9_A 181 --GMPVD 185 (198)
T ss_dssp --CGGGT
T ss_pred --CcccC
Confidence 44443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=7.2e-11 Score=105.64 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=47.6
Q ss_pred cEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 88 r~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
++++++++.+..+|..+. .+|++|++++|.+.. +..|+++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344444444444444332 444555555554443 23444555555555555555544443 2445555555555544
Q ss_pred cccccchHHHhCCcCCcEEEcCCCcc
Q 007039 165 WLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 165 ~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
+..+|...+.++++|++|++++|.+
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -cceeCHHHhccccCCCEEEeCCCCc
Confidence 4444443344455555555554443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=8.9e-11 Score=104.70 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=49.6
Q ss_pred cEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 88 r~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
++++++++.+..+|..+. .+|++|++++|.+.. +..|.++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555544332 445555555555444 23455555555555555555555443 2455555555555554
Q ss_pred cccccchHHHhCCcCCcEEEcCCCcc
Q 007039 165 WLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 165 ~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
+..++...+.++++|++|++++|.+
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4444444345555555555555544
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=5.4e-10 Score=99.90 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=73.0
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecC
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA 138 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~ 138 (620)
+.++++++.. ..+|..+ .++|++|++++|.+..+ |..++++++|++|+|++|.+.. + ..|.++++|++|+++
T Consensus 15 ~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 5666766665 5666543 36777777777777766 4567777778888887777776 4 345778888888888
Q ss_pred CCCCCCCChh-ccCCCCCCEEeCCCCccccccc
Q 007039 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 139 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p 170 (620)
+|.++.+|.. +..+++|++|++++|. +...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 8888777765 7778888888888876 44443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=1.2e-10 Score=116.14 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCC-EEEeecCCCCCCCCccc
Q 007039 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT-TLEIEVPDAEILPPDFV 230 (620)
Q Consensus 152 l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~ 230 (620)
+++|+.+++.+|. +..+|..+|.++.+|+.+++..+ +. ......+.++++|+ .+.+.. ....++...+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~--------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LK--------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cc--------eehHHHhhCChhccEEEEEcc-cceEEchhhh
Confidence 4555555555544 45555555555555555555544 21 01123445555555 555544 4444444433
Q ss_pred c--cCceEEEE
Q 007039 231 S--VELQRYKI 239 (620)
Q Consensus 231 ~--~~L~~L~l 239 (620)
. .+|+.+.+
T Consensus 294 ~~c~~L~~l~l 304 (329)
T 3sb4_A 294 MGCDNLRYVLA 304 (329)
T ss_dssp TTCTTEEEEEE
T ss_pred hCCccCCEEEe
Confidence 3 45555554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=1.2e-09 Score=97.38 Aligned_cols=99 Identities=22% Similarity=0.172 Sum_probs=73.2
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
.++++++++.. ..+|..+ .+.|++|++++|.+..+ |..|+++++|++|++++|.+.. + ..|.++++|++|++
T Consensus 11 ~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45667777665 5566543 36777888888887776 4567778888888888888776 3 45678888888888
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
++|.++.+|.. +.++++|++|++++|.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88888877764 7778888888888876
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=1.8e-09 Score=107.71 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCc-EEEcCC
Q 007039 129 LKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE-ELYMGN 187 (620)
Q Consensus 129 L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~-~L~l~~ 187 (620)
+.+|+.+++++|.++.+|.. +.++++|+.+++.++ +..++..+|.++.+|+ .+.+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 34444444444444444432 444445555554443 4444444444444454 444443
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=8.6e-10 Score=111.37 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=87.4
Q ss_pred CCccEEEcccCCCCCcccchHHHh-----cCCCCcEEEcCCCCCCC--ChhhhhcccCCcEEEccCCCCCC--hhhh---
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFE-----GMEGLKVLQFPGIGSSS--LPSSLGRLINLQTLCLDWCELAD--IAAI--- 126 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~-----~l~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~--~~~i--- 126 (620)
++|++|++++|.+ .......+. ..++|++|++++|.+.. +......+.+|++|+|++|.+.+ ...+
T Consensus 72 ~~L~~L~Ls~n~l--~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRM--TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCC--CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCC--CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4566777776665 221111111 22567777777776643 22222345567777777777664 2332
Q ss_pred --cCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCccccccc----hHHHhCCcCCcEEEcCCCccccccc
Q 007039 127 --GQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLEVIA----PNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 127 --~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p----~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
....+|++|++++|.++. ++..+..+++|++|++++|. ++... ...+...++|++|++++|.+.....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 235667777777776652 44455666777777777776 44322 1224556677777777776641110
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
......+...+.|++|++++|.+.
T Consensus 229 ----~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 ----LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ----HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ----HHHHHHHHhCCCCCEEeccCCCCC
Confidence 122334455667777777776643
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=9.1e-10 Score=111.19 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=117.5
Q ss_pred cccCCcEEEEccCCCCcCC-----CCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-----h
Q 007039 34 TIQKDPIAISLPHRDIQEL-----PERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-----P 101 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l-----~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-----p 101 (620)
...+.++.|++++|.+... .... ..++|++|++++|.+ ...-...+...+++|++|++++|.+... .
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 4478899999999998532 2221 347999999999987 3333334445678999999999998642 2
Q ss_pred hhh-hcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCcccccc
Q 007039 102 SSL-GRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLEVI 169 (620)
Q Consensus 102 ~~~-~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~ 169 (620)
..+ ....+|++|+|++|.+.+ . ..+...++|++|++++|.+.. ++..+...++|++|++++|. ++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 333 246789999999999875 2 445789999999999998873 45667888999999999997 5543
Q ss_pred chH----HHhCCcCCcEEEcCCCccc
Q 007039 170 APN----VISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 170 p~~----~l~~l~~L~~L~l~~~~~~ 191 (620)
... .+...++|++|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 322 2456789999999999876
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.2e-08 Score=102.37 Aligned_cols=97 Identities=22% Similarity=0.128 Sum_probs=51.5
Q ss_pred EEcccC-CCCCcccchHHHhcCCCCcEEEcCC-CCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 64 FLLYTE-GNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 64 L~l~~~-~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
++++++ .. ..+|. +..+++|++|+|++ |.+..+| ..|+++.+|++|+|++|.+.. +..|.+|++|++|+|+
T Consensus 13 v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 355544 33 44554 35555566666654 5555544 345555556666666555554 2445555555566655
Q ss_pred CCCCCCCChhccCCCCCCEEeCCCCc
Q 007039 139 YSNINQLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 139 ~~~l~~lp~~i~~l~~L~~L~l~~~~ 164 (620)
+|.++.+|..+....+|+.|++.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 55555555443333335555555554
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=4.3e-08 Score=98.41 Aligned_cols=100 Identities=24% Similarity=0.188 Sum_probs=75.2
Q ss_pred EEEcCCC-CCCCChhhhhcccCCcEEEccC-CCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCC
Q 007039 89 VLQFPGI-GSSSLPSSLGRLINLQTLCLDW-CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNC 163 (620)
Q Consensus 89 ~L~l~~~-~~~~lp~~~~~l~~L~~L~L~~-~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 163 (620)
.++++++ .+..+|. ++.+.+|++|+|++ |.+.. + ..|+.|.+|++|+|++|.++.+|. .+.++++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577776 7777888 88888888888885 77776 3 667888888888888888876654 4678888888888887
Q ss_pred ccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 164 WWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 164 ~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
. +..+|...+..+. |+.|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7 6777776555555 888888877765
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.57 E-value=6.1e-07 Score=91.62 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=29.0
Q ss_pred cchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 76 VSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 76 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
+....|.++.+|+.+.+..+ ++.++ .+|.+|.+|+.+++..+ +.. ...|..+.+|+.+.+.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 44444555555555555432 34432 34555555555555432 222 2344555555554443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=9.6e-07 Score=89.90 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=145.3
Q ss_pred CCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++.+.+..+ +..++... .-.+|+.+.+.. . ...+....|.++++|+.+++..+.+..++...-.+.+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-T--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-T--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-C--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 35666666554 54444433 224799999875 3 3667777789999999999999998888764444689999999
Q ss_pred cCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 116 DWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 116 ~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
..+ +.. ...|.++.+|+.+++..+ ++.++...-.-.+|+.+.+.+. +..++..+|.++++|+.+.+.++.....
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 854 555 478889999999999874 6666554323378888888553 6778877788999999998877654310
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
.. .......+.++++|+.+.+. +....++...+. .+|+.+.+... .. .-....+..+ +|+.+.+.+.
T Consensus 287 ~~---~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 287 PE---AMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TT---CEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCS
T ss_pred cc---cEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCC
Confidence 00 01223567788888888887 446666666555 78888877322 11 1011124556 8888888873
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.52 E-value=1.2e-06 Score=89.26 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=144.1
Q ss_pred CCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEE
Q 007039 37 KDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTL 113 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L 113 (620)
.+++.+.+.. .+..++... +|++|+.+++..+.. ..++...|. +..|+.+.+..+ +..++ ..|.+|.+|+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 4577777765 555555433 899999999998876 778877776 689999999854 66664 578889999999
Q ss_pred EccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCcc----ccccchHHHhCCcCCcEEEcC
Q 007039 114 CLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWW----LEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 114 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~----~~~~p~~~l~~l~~L~~L~l~ 186 (620)
++..+ +.. ...|.+ .+|+.+.+.. .++.++ ..+.++++|+.+++.++.. ...++..+|.++.+|+.+.+.
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 99874 444 355666 7888888843 566664 4577888999998877641 125777778889999999887
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEe
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (620)
.+ +. ......+.++++|+.+.+..+ ...++...+. .+|+.+.+.....+........+....++.+.+.
T Consensus 309 ~~-i~--------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 309 ES-IR--------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TT-CC--------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred Cc-eE--------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 43 22 122356778888888888543 5556655555 6888888865543332222112222456777766
Q ss_pred c
Q 007039 266 G 266 (620)
Q Consensus 266 ~ 266 (620)
.
T Consensus 379 ~ 379 (401)
T 4fdw_A 379 A 379 (401)
T ss_dssp G
T ss_pred H
Confidence 5
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=1e-07 Score=83.60 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=20.0
Q ss_pred CccEEEEecCCCcceecchhhhcccCcccEEEEcccccccc
Q 007039 469 NLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG 509 (620)
Q Consensus 469 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 509 (620)
.|+.|++++|. +++... ..+..+++|++|++++|..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCH
Confidence 45566666654 444421 2234555555555555555543
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=7e-08 Score=84.60 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=44.1
Q ss_pred cccCccceEecCCccccccccccCCccc-cccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccc
Q 007039 437 VTFPRLEELELVSLTNIKKLWSDQFQGI-YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG 509 (620)
Q Consensus 437 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 509 (620)
..+++|++|+|++|..++.-....+... ..+++|++|+|++|+++++... ..+..+++|++|+|++|+.+++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 4577778888888776654321111100 0134677888888877777643 3345677777777777777765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=4.1e-07 Score=90.93 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=112.6
Q ss_pred cCCcEEEEccCCCCcC---------CCCcC-CCCCccEEEcccCCCCC-------cccchHHHhcCCCCcEEEcCCCCCC
Q 007039 36 QKDPIAISLPHRDIQE---------LPERL-QCPNLQLFLLYTEGNGP-------MQVSDHFFEGMEGLKVLQFPGIGSS 98 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~---------l~~~~-~~~~Lr~L~l~~~~~~~-------~~~~~~~~~~l~~Lr~L~l~~~~~~ 98 (620)
..+++.|.+....... +.... ++++|+.|.+.+..... ..-...++..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4567888887554321 11112 67899999886543210 0112345578899999999887423
Q ss_pred CChhhhhcccCCcEEEccCCCCCC--hhhhc--CCCCCCEEecCCC--C------CCCCChhc--cCCCCCCEEeCCCCc
Q 007039 99 SLPSSLGRLINLQTLCLDWCELAD--IAAIG--QLKKLEILSLAYS--N------INQLPVEI--GQLTRLQLLDLSNCW 164 (620)
Q Consensus 99 ~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~--~L~~L~~L~l~~~--~------l~~lp~~i--~~l~~L~~L~l~~~~ 164 (620)
.++. + .+++|++|++..|.+.. ...+. .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 4444 3 37889999999888765 45554 7899999998532 1 22222222 357899999998887
Q ss_pred cccccchHHH--hCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 165 WLEVIAPNVI--SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 165 ~~~~~p~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
.....+..+. ..+++|++|+++.|.+..... .+....+.++++|+.|+++.|..
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcC
Confidence 4333333212 257899999998877651100 12233446778899999987753
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=5.4e-06 Score=84.56 Aligned_cols=302 Identities=13% Similarity=0.107 Sum_probs=158.3
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
+|.+|+.+.+..+ . ..+....|.++..|+.+++..+ ++.++ ..|.++..|+.+.+..+ +.. ...|.....+.
T Consensus 69 ~c~~L~~i~lp~~-i--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 69 GCRKVTEIKIPST-V--REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TCTTEEEEECCTT-C--CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred CCCCceEEEeCCC-c--cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 7889999999643 3 6677777899999999999755 45554 46778888888766543 222 34455544433
Q ss_pred EEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCC
Q 007039 134 ILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (620)
Q Consensus 134 ~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (620)
...... +..+ ...+.++++|+.+.+.+. +..++..++..+.+|+.+.+..+... .....+.++..|
T Consensus 144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~---------I~~~~F~~~~~L 210 (394)
T 4fs7_A 144 ITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI---------IRDYCFAECILL 210 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE---------ECTTTTTTCTTC
T ss_pred cccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE---------eCchhhcccccc
Confidence 332222 2222 234667788888887654 45666666777888887777654211 112344555556
Q ss_pred CEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceec
Q 007039 213 TTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL 291 (620)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l 291 (620)
+.+.+..+. ..+...... ..|+.+.+.... ..-....+.....++.+.+... ...+. ......+..++.+..
T Consensus 211 ~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~--~~~i~--~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 211 ENMEFPNSL-YYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNN--KLRIG--GSLFYNCSGLKKVIY 283 (394)
T ss_dssp CBCCCCTTC-CEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCT--TCEEC--SCTTTTCTTCCEEEE
T ss_pred ceeecCCCc-eEeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCC--cceee--ccccccccccceecc
Confidence 555443322 111222222 556666552111 0000011334455555555431 11111 111011223333332
Q ss_pred ccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCc
Q 007039 292 ETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR 371 (620)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 371 (620)
.... . ... .+..+.+|+.+.+.+. ++.+.. . ....+.+|+.+.+.. +++.+.... ...+.+|+
T Consensus 284 ~~~~---i--~~~-~F~~~~~L~~i~l~~~--i~~I~~-~---aF~~c~~L~~i~lp~--~v~~I~~~a---F~~c~~L~ 346 (394)
T 4fs7_A 284 GSVI---V--PEK-TFYGCSSLTEVKLLDS--VKFIGE-E---AFESCTSLVSIDLPY--LVEEIGKRS---FRGCTSLS 346 (394)
T ss_dssp CSSE---E--CTT-TTTTCTTCCEEEECTT--CCEECT-T---TTTTCTTCCEECCCT--TCCEECTTT---TTTCTTCC
T ss_pred Ccee---e--ccc-cccccccccccccccc--cceech-h---hhcCCCCCCEEEeCC--cccEEhHHh---ccCCCCCC
Confidence 2111 1 111 1346778888877542 444421 1 233456677777643 344443332 45677788
Q ss_pred EEEeecCCCceeecchhHHHHhcccceEEEEe
Q 007039 372 IINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (620)
Q Consensus 372 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (620)
.+.+.. +++.+.. ..+.++++|+++.+..
T Consensus 347 ~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 347 NINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred EEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 887753 3666543 3456788888887753
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=3.7e-06 Score=75.60 Aligned_cols=109 Identities=14% Similarity=0.044 Sum_probs=56.5
Q ss_pred HhcCCCCcEEEcCCC-CCCC-----ChhhhhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCC----
Q 007039 81 FEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ---- 144 (620)
Q Consensus 81 ~~~l~~Lr~L~l~~~-~~~~-----lp~~~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~---- 144 (620)
+...+.|++|++++| .+.. +...+....+|++|+|++|.+.+ . ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345556666666665 5432 33444455566666666666553 1 233344566666666665552
Q ss_pred -CChhccCCCCCCEEeC--CCCccccccch----HHHhCCcCCcEEEcCCCcc
Q 007039 145 -LPVEIGQLTRLQLLDL--SNCWWLEVIAP----NVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 145 -lp~~i~~l~~L~~L~l--~~~~~~~~~p~----~~l~~l~~L~~L~l~~~~~ 190 (620)
+...+...++|++|++ ++|. ++.... .++...+.|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444555566666666 4454 332111 1133445666666665554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=3e-06 Score=84.65 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=111.8
Q ss_pred cccCCcEEEEccCCCCc----------CCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-Ch
Q 007039 34 TIQKDPIAISLPHRDIQ----------ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LP 101 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~----------~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp 101 (620)
..+++++.|.+...... .+.... .+|+|+.|.+.++.. ..++. + .+++|+.|++..+.+.. ..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~--~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK--K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc--c-cCCCCcEEEEecCCCChHHH
Confidence 34679999999765331 122222 789999999998743 33444 2 38899999999887642 12
Q ss_pred hhhh--cccCCcEEEccCC--C------CCCh-hhh--cCCCCCCEEecCCCCCCC-CChhc---cCCCCCCEEeCCCCc
Q 007039 102 SSLG--RLINLQTLCLDWC--E------LADI-AAI--GQLKKLEILSLAYSNINQ-LPVEI---GQLTRLQLLDLSNCW 164 (620)
Q Consensus 102 ~~~~--~l~~L~~L~L~~~--~------~~~~-~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~l~~~~ 164 (620)
..+. .+++|++|+|+.+ . +... ..+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 2333 7899999998642 1 1111 122 358899999999987762 22222 358899999999987
Q ss_pred ccccc-----chHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcC-CCCCCEEEeecCC
Q 007039 165 WLEVI-----APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPD 221 (620)
Q Consensus 165 ~~~~~-----p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 221 (620)
++.. +.. +..+++|+.|+++.|.+. +.....+.. + ...++++.+.
T Consensus 291 -L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~--------d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 -LTDEGARLLLDH-VDKIKHLKFINMKYNYLS--------DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp -CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC--------HHHHHHHHHHC--CSEEECCSBC
T ss_pred -CChHHHHHHHhh-cccCCcceEEECCCCcCC--------HHHHHHHHHHc--CCEEEecCCc
Confidence 4442 222 356799999999998765 233444544 3 3456776654
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=0.00023 Score=72.29 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=69.1
Q ss_pred cccchHHHhcCC-CCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCC---CCC--hhhhcCCCCCCEEecCCCCCCCCC
Q 007039 74 MQVSDHFFEGME-GLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE---LAD--IAAIGQLKKLEILSLAYSNINQLP 146 (620)
Q Consensus 74 ~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~---~~~--~~~i~~L~~L~~L~l~~~~l~~lp 146 (620)
..+....|.+++ .|+.+.+..+ ++.+. .+|.+|.+|+.+.+..+. +.. ...|....+|+.+.+..+ ++.++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 345556667774 5888888754 45553 567888888888887653 443 256666777776665443 44443
Q ss_pred h-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCC
Q 007039 147 V-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (620)
Q Consensus 147 ~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~ 188 (620)
. .+..+.+|+.+.+... +..++..++..+.+|+.+.+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 3 3566677777777543 45555555667777777766543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=6.6e-06 Score=73.91 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=81.4
Q ss_pred CCCCccEEEcccC-CCCCcc--cchHHHhcCCCCcEEEcCCCCCCC-----ChhhhhcccCCcEEEccCCCCCC------
Q 007039 57 QCPNLQLFLLYTE-GNGPMQ--VSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD------ 122 (620)
Q Consensus 57 ~~~~Lr~L~l~~~-~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~------ 122 (620)
..+.|++|++++| .+.... .....+...+.|++|++++|.+.. +...+...+.|++|+|++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 6788999999888 661111 112234567889999999999863 55667777889999999999875
Q ss_pred hhhhcCCCCCCEEec--CCCCCCC-----CChhccCCCCCCEEeCCCCc
Q 007039 123 IAAIGQLKKLEILSL--AYSNINQ-----LPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 123 ~~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 164 (620)
...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 256677889999999 8888873 55566777899999999986
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=0.0004 Score=70.59 Aligned_cols=146 Identities=9% Similarity=0.110 Sum_probs=99.6
Q ss_pred CCC-CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCC---CCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCC
Q 007039 57 QCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG---SSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQL 129 (620)
Q Consensus 57 ~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L 129 (620)
+++ .|+.+.+-.. ...+....|.++..|+.+.+..+. ++.+. .+|.+|.+|+.+.+..+ +.. ...|..+
T Consensus 61 ~~~~~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TCCSCCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred CCCCcCEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 453 5888888643 366777778999999999998654 45554 57888889988877654 333 3678889
Q ss_pred CCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcC
Q 007039 130 KKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER 208 (620)
Q Consensus 130 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 208 (620)
.+|+.+.+... +..++. .+..+.+|+.+.+... +..+...++.. .+|+.+.+...... .....+.+
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~---------i~~~af~~ 203 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR---------IGTNAFSE 203 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE---------ECTTTTTT
T ss_pred cccccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc---------cccchhhh
Confidence 99999999754 444433 4678899999998764 56777665654 57888887654322 12234555
Q ss_pred CCCCCEEEeec
Q 007039 209 LTELTTLEIEV 219 (620)
Q Consensus 209 l~~L~~L~l~~ 219 (620)
+..+.......
T Consensus 204 c~~l~~~~~~~ 214 (394)
T 4gt6_A 204 CFALSTITSDS 214 (394)
T ss_dssp CTTCCEEEECC
T ss_pred ccccceecccc
Confidence 66666655443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1.9e-05 Score=74.67 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=61.1
Q ss_pred hcCCCCcE--EEcCCCCCCCChh----hhhcccCCcEEEccCCCCCCh----hhhcCCCCCCEEecCCCCCCCCChhccC
Q 007039 82 EGMEGLKV--LQFPGIGSSSLPS----SLGRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQ 151 (620)
Q Consensus 82 ~~l~~Lr~--L~l~~~~~~~lp~----~~~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 151 (620)
...+.|+. ++++.|....++. ...++++|++|+|++|.+..+ ..++.+++|++|+|++|.+..+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence 33444444 4555554333322 224567777777777776652 3445777777777777777765 23444
Q ss_pred CC--CCCEEeCCCCccccccc------hHHHhCCcCCcEEE
Q 007039 152 LT--RLQLLDLSNCWWLEVIA------PNVISKLSQLEELY 184 (620)
Q Consensus 152 l~--~L~~L~l~~~~~~~~~p------~~~l~~l~~L~~L~ 184 (620)
+. +|++|++++|.....+| ..++..+++|+.|+
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44 77788887777444343 23367788888776
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=9.1e-06 Score=76.87 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=38.6
Q ss_pred cCCCCCCEEecCCCCCCCCC---hhccCCCCCCEEeCCCCccccccchHHHhCCc--CCcEEEcCCCccc
Q 007039 127 GQLKKLEILSLAYSNINQLP---VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS--QLEELYMGNGFSG 191 (620)
Q Consensus 127 ~~L~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~--~L~~L~l~~~~~~ 191 (620)
.++++|++|+|++|.++.++ ..+..+++|++|++++|. +..+.. +..+. +|++|++.+|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcCc
Confidence 35667777777777666543 445567777777777766 444422 34443 6777777777665
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.10 E-value=0.023 Score=56.99 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCC
Q 007039 80 FFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRL 155 (620)
Q Consensus 80 ~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L 155 (620)
.+..+..|+.+.+..+- ..+ ...+.++.+|+.+.+..+ +.. ...+....+|+.+.+..+ +..++. .+..+++|
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 34566677777665442 222 335566677777777554 333 355666677777776543 444443 35667777
Q ss_pred CEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEee
Q 007039 156 QLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIE 218 (620)
Q Consensus 156 ~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 218 (620)
+.+.+.++. ++.++..+|.++.+|+.+.+..+ +. ......+.++++|+++.+.
T Consensus 289 ~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~--------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK--------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCCCCCC
T ss_pred ccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc--------EEHHHHhhCCCCCCEEEEC
Confidence 777776654 56666666777777777777543 11 1122456666667666653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.58 E-value=0.064 Score=53.75 Aligned_cols=144 Identities=11% Similarity=0.084 Sum_probs=92.9
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEe
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLD 159 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 159 (620)
....+..+.+...........+..+.+|+.+.+..+ +.. ...+....+|+.+.+..+ ++.+.. .+.++.+|+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 344555555554433233445667788888887654 332 466778888888888664 555543 466788888888
Q ss_pred CCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEE
Q 007039 160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRY 237 (620)
Q Consensus 160 l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L 237 (620)
+... +..++..++..+.+|+.+.+.++.+.. .....+.++.+|+.+.+.. ....++...+. .+|+.+
T Consensus 270 l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~--------I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 270 FYAK--VKTVPYLLCSGCSNLTKVVMDNSAIET--------LEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp ECCC--CSEECTTTTTTCTTCCEEEECCTTCCE--------ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCC
T ss_pred cccc--ceeccccccccccccccccccccccce--------ehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEE
Confidence 8653 667777778888899988887665431 1225677888888888753 34555555444 567766
Q ss_pred EE
Q 007039 238 KI 239 (620)
Q Consensus 238 ~l 239 (620)
.+
T Consensus 339 ~i 340 (379)
T 4h09_A 339 SY 340 (379)
T ss_dssp CC
T ss_pred EE
Confidence 55
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.09 E-value=0.035 Score=45.87 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=34.7
Q ss_pred EEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 134 ILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 134 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++.++.+++ .+|..+. .+|++|++++|. +..+|.+.|..+++|+.|++.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5556666666 6665432 356777777766 66666666666777777777666543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.78 E-value=0.042 Score=45.42 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=14.9
Q ss_pred CCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCC
Q 007039 86 GLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCE 119 (620)
Q Consensus 86 ~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 119 (620)
.|++|+|++|.+..+|. .|..+.+|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34444444444444432 23344444444444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.53 E-value=0.1 Score=46.28 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=40.9
Q ss_pred cCCCCcEEEcCCC-CCCC-----ChhhhhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCC-----CC
Q 007039 83 GMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QL 145 (620)
Q Consensus 83 ~l~~Lr~L~l~~~-~~~~-----lp~~~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~l 145 (620)
.-+.|+.|+|+++ .+.. +.+.+..-..|+.|+|++|.+.+ - ..+..=+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666553 4431 33444444556666666666553 1 23333455666666666554 22
Q ss_pred ChhccCCCCCCEEeCCCC
Q 007039 146 PVEIGQLTRLQLLDLSNC 163 (620)
Q Consensus 146 p~~i~~l~~L~~L~l~~~ 163 (620)
-..+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 333444455666666543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.54 E-value=0.077 Score=47.14 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=67.8
Q ss_pred hhhcccCCcEEEccCC-CCCC--h----hhhcCCCCCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCccccccc
Q 007039 103 SLGRLINLQTLCLDWC-ELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 103 ~~~~l~~L~~L~L~~~-~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p 170 (620)
.+.+-..|+.|+|+++ .+.+ . +.+..=+.|+.|+|++|.+. .+...+..-+.|++|++++|. ++...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHH
Confidence 3344567888999885 6764 1 55666678888888888776 344445556778888888876 44332
Q ss_pred hHH----HhCCcCCcEEEcCCCcc-ccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 171 PNV----ISKLSQLEELYMGNGFS-GWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 171 ~~~----l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
... +..-+.|++|+++++.. ..... ...+....+..-+.|+.|+++++.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~--g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQ--VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHH--HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHH--HHHHHHHHHHhCCCcCeEeccCCC
Confidence 221 33335688888765422 10000 001233445555667777776543
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=68.77 E-value=1.1 Score=47.16 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=16.3
Q ss_pred CchhHHHHHHHhhccCCe
Q 007039 1 MHDVIHVVAVSIATEERM 18 (620)
Q Consensus 1 mHdl~~dla~~~s~~~~~ 18 (620)
|||+|||+|+++++++++
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 899999999999987765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.34 E-value=43 Score=25.51 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=18.3
Q ss_pred ccCCccEEEEecCCCcceecchhhhcccCcccEEEEcc
Q 007039 466 CCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503 (620)
Q Consensus 466 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 503 (620)
+|++|+++.|-. .++.+. ...+.++.+|+++.+.+
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig-~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLY-DGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCC-TTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEc-HHHHhccCCccEEEEcC
Confidence 456666666644 444442 23345555555555554
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.08 E-value=48 Score=25.21 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=22.5
Q ss_pred cccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccC
Q 007039 74 MQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 74 ~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 117 (620)
..+....|.++..|+.+.+..+ ++.+ ...|.+|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444445566666666666544 2333 23455556666555554
Done!