BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007040
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 11/311 (3%)
Query: 15 NPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E L A VA + + + + A L++ L
Sbjct: 22 HPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITL 78
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXXXXXXX 131
R + + ++I+ +GS +D A DLG+ + +V + EE AD+ +
Sbjct: 79 TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYR 138
Query: 132 XXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVL 189
+ ++ + G R RG LGI+G F +VL
Sbjct: 139 RTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVL 198
Query: 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249
++D P + +R+ TL DLL SD ++LHC + + +IN ++ ++ GAF
Sbjct: 199 FYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 257
Query: 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADYS 307
LVNT L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A YS
Sbjct: 258 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 317
Query: 308 EEVWMEIRDKA 318
E+ +E+R++A
Sbjct: 318 EQASIEMREEA 328
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 145/319 (45%), Gaps = 11/319 (3%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAV 63
P M +P PL VAL DC +E L A VA + + + + A
Sbjct: 14 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 70
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVM 123
L++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+ +
Sbjct: 71 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 124 XXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXX 181
+ ++ + G R RG LGI+G
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA 190
Query: 182 XXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241
F +VL++D P + +R+ TL DLL SD ++LHC + + +IN +
Sbjct: 191 KAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTV 249
Query: 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLI 299
+ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++ PN++
Sbjct: 250 KQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLIC 309
Query: 300 LPRSADYSEEVWMEIRDKA 318
P +A YSE+ +E+R++A
Sbjct: 310 TPHAAWYSEQASIEMREEA 328
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 6/265 (2%)
Query: 58 EAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEE 117
EA A++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE
Sbjct: 66 EAVGALMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEE 124
Query: 118 IADTVMXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXX 175
AD+ + + ++ + G R RG LGI+G
Sbjct: 125 TADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQ 184
Query: 176 XXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
F +VL++D P + +R+ TL DLL SD ++LHC + + +
Sbjct: 185 AVALRAKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 243
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVRE 293
IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++
Sbjct: 244 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 303
Query: 294 MPNVLILPRSADYSEEVWMEIRDKA 318
PN++ P +A YSE+ +E+R++A
Sbjct: 304 APNLICTPHAAWYSEQASIEMREEA 328
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 11/313 (3%)
Query: 13 RDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAVLLHSLA 69
R + PL VAL DC +E L A VA + + + + A L++
Sbjct: 17 RGSHMPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTI 73
Query: 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXXXXX 129
L R + + ++I+ +GS +D A DLG+ + +V + EE AD+ +
Sbjct: 74 TLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNL 133
Query: 130 XXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMS 187
+ ++ + G R RG LGI+G F +
Sbjct: 134 YRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFN 193
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247
VL++D P V +R+ TL DLL SD ++LHC + + +IN ++ ++ G
Sbjct: 194 VLFYD-PYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQG 252
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSAD 305
AFLVNT L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A
Sbjct: 253 AFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 312
Query: 306 YSEEVWMEIRDKA 318
YSE+ +E+R++A
Sbjct: 313 YSEQASIEMREEA 325
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 11/311 (3%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 3 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 59
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXXXXXXX 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ +
Sbjct: 60 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYR 119
Query: 132 XXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVL 189
+ ++ + G R RG LG++G F SV+
Sbjct: 120 RNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVI 179
Query: 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249
++D P + + +R+ TL DLL SD +SLHC + + +IN ++ ++ GAF
Sbjct: 180 FYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAF 238
Query: 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADYS 307
LVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A YS
Sbjct: 239 LVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYS 298
Query: 308 EEVWMEIRDKA 318
E+ +E+R+ A
Sbjct: 299 EQASLEMREAA 309
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 156 GMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL 215
G R RG LGIVG M+V Y+D + K+ + + + +L++L
Sbjct: 150 GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD---KLQYGNV-KPAASLDEL 205
Query: 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275
L SDV+SLH + T ++I L+ +K GAFL+N +D A+ ++L +G LAG
Sbjct: 206 LKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAG 265
Query: 276 CALD-----GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI 314
A+D A + ++ + NV++ P +EE I
Sbjct: 266 AAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERI 309
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 158 RRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA 217
R L LG++G F VL +DV + + +L++LL
Sbjct: 137 RELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRED---LKEKGCVYTSLDELLK 193
Query: 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277
SDVISLH T ET IN E + K G +L+NT +++D A+ + G +G
Sbjct: 194 ESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLG 253
Query: 278 LDGAEGPQWM-------------EAWVREMP---NVLILPRSADYSEEVWMEIRDKAISV 321
LD E + + + E+ NV+I P A Y+++ IR++ + V
Sbjct: 254 LDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKV 313
Query: 322 LQTF 325
++ F
Sbjct: 314 VKAF 317
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 158 RRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDV---PEGKGKVTFPSAARRMDTLND 214
R R V+G+VG F V+ +D+ PE + K + +D+L+D
Sbjct: 142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYY------VDSLDD 195
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
L +DVISLH + +IN E + +K +VN L+D AV + L G +
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255
Query: 275 GCALD--------------GAEGPQWMEAWVREMPNVLILPRSADYS 307
G A+D G E P A + PNVL+ P++A Y+
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYT 302
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 158 RRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDV---PEGKGKVTFPSAARRMDTLND 214
R R V+G+VG F V+ +D+ PE + K + +D+L+D
Sbjct: 142 REVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYY------VDSLDD 195
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
L +DVISLH + +IN + + +K G +VN +L+D AV + L G +
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIF 255
Query: 275 GCALD--------------GAEGPQWMEAWVREMPNVLILPRSADYS 307
G +D G E P A + + PNVL+ P +A Y+
Sbjct: 256 GFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYT 302
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 23/167 (13%)
Query: 158 RRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDV---PEGKGKVTFPSAARRMDTLND 214
R R V+G+VG F V+ +D+ PE + K + +D+L+D
Sbjct: 142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYY------VDSLDD 195
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
L +DVISLH + +IN E + +K +VN L+D AV + L G +
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255
Query: 275 GCALD--------------GAEGPQWMEAWVREMPNVLILPRSADYS 307
G A+D G E P A + PNVL+ P +A Y+
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYT 302
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L DL SDVI LH ++ IIN +KPGA ++NT L+D A+ L
Sbjct: 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS 249
Query: 271 GTLAGCALDGAE----------------GPQWMEAWVREMPNVLILPRSADYSE 308
G LAG +D E P W E + MPNV++ P A Y+E
Sbjct: 250 GKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDE--LLGMPNVVLSPHIAYYTE 301
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 153 LCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212
L G RG LGI+G M V ++D+ + K+ +A + + L
Sbjct: 142 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDI---ENKLPLGNATQ-VQHL 197
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
+DLL SDV+SLH T ++ A+ + +KPG+ L+N ++D A+ L
Sbjct: 198 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKH 257
Query: 273 LAGCALD-----GAEGPQWMEAWVREMPNVLILPR----SADYSEEVWMEIRDKAI 319
LAG A+D A + + E NVL+ P + + E + +E+ K I
Sbjct: 258 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLI 313
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 153 LCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212
L G RG LGI+G M V ++D+ + K+ +A + + L
Sbjct: 142 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDI---ENKLPLGNATQ-VQHL 197
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
+DLL SDV+SLH T ++ A+ + +KPG+ L+N ++D A+ L
Sbjct: 198 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKH 257
Query: 273 LAGCALD-----GAEGPQWMEAWVREMPNVLILPR----SADYSEEVWMEIRDKAI 319
LAG A+D A + + E NVL+ P + + E + +E+ K I
Sbjct: 258 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLI 313
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 208 RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
R ++L A+SD I L + +T+ ++NAE L ++PGA LVN ++D+ AV
Sbjct: 191 RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAA 250
Query: 268 LIDGTLAGCALD--------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI-RDKA 318
L G L G A D A+ PQ ++ + PN L P V +EI R A
Sbjct: 251 LERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAA 310
Query: 319 ISVLQTFFFDGVIPKNAIS 337
++LQ G P NA++
Sbjct: 311 QNILQA--LAGERPINAVN 327
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 208 RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
R ++L A+SD I L + +T+ ++NAE L ++PGA LVN ++D+ AV
Sbjct: 190 RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAA 249
Query: 268 LIDGTLAGCALD--------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI-RDKA 318
L G L G A D A+ PQ ++ + PN L P V +EI R A
Sbjct: 250 LERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAA 309
Query: 319 ISVLQTFFFDGVIPKNAIS 337
++LQ G P NA++
Sbjct: 310 QNILQA--LAGERPINAVN 326
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
++L A+SD I L + +T+ ++NAE L ++PGA LVN ++D+ AV L G
Sbjct: 195 SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQ 254
Query: 273 LAGCALD--------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI-RDKAISVLQ 323
L G A D A+ PQ ++ + PN L P V +EI R A ++LQ
Sbjct: 255 LGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQ 314
Query: 324 TFFFDGVIPKNAIS 337
G P NA++
Sbjct: 315 A--LAGERPINAVN 326
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
++L A+SD I L + +T+ ++NAE L ++PGA LVN ++D+ AV L G
Sbjct: 195 SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQ 254
Query: 273 LAGCALD--------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI-RDKAISVLQ 323
L G A D A+ PQ ++ + PN L P V +EI R A ++LQ
Sbjct: 255 LGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQ 314
Query: 324 TFFFDGVIPKNAIS 337
G P NA++
Sbjct: 315 A--LAGERPINAVN 326
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
++L A+SD I L + +T+ ++NAE L ++PGA LVN ++D+ AV L G
Sbjct: 195 SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQ 254
Query: 273 LAGCALD--------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI-RDKAISVLQ 323
L G A D A+ PQ ++ + PN L P V +EI R A ++LQ
Sbjct: 255 LGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQ 314
Query: 324 TFFFDGVIPKNAIS 337
G P NA++
Sbjct: 315 A--LAGERPINAVN 326
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 153 LCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212
L G RG LGI+G M V ++D+ + K+ +A + + L
Sbjct: 141 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDI---ENKLPLGNATQ-VQHL 196
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
+DLL SDV+SLH T ++ A+ + +KPG+ L+N ++D A+ L
Sbjct: 197 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKH 256
Query: 273 LAGCALD-----GAEGPQWMEAWVREMPNVLILPR----SADYSEEVWMEIRDKAI 319
LAG A+D A + + E NVL+ P + + E + +E+ K I
Sbjct: 257 LAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLI 312
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 62/163 (38%)
Query: 164 VLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVIS 223
LGI G F M + YFD A D+L+ LL+ S S
Sbjct: 148 TLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFS 207
Query: 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283
L+ T ET N ++ + GA +VNT L+D+ V L G LA D G
Sbjct: 208 LNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAG 267
Query: 284 PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
+ ++PN + P + + ++ +A ++ F
Sbjct: 268 EPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALF 310
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 163 LVLGIVGXXXXXXXXXXXXXXFKMSVLYFDV---PEGKGKVTFPSAARRMDTLNDLLAAS 219
L +G++G V+ +DV PE + +T+ + +L +
Sbjct: 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTD-------FDTVLKEA 201
Query: 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
D++SLH + T +I + L+ +K A+L+N +L+D A+ + L DG +AG LD
Sbjct: 202 DIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLD 261
Query: 280 GAEG---------------PQWMEAWVREMPNVLILPRSADYSE 308
G P+ + + MPNV+I P SA Y+E
Sbjct: 262 TLAGESSYFGHTGLTDSEIPEDYKTLAK-MPNVVITPHSAFYTE 304
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 184 FKMSVLYFDVPEGKGKVTFPSAARRMDT----LNDLLAASDVISLHCAVTDETIQIINAE 239
F M +LY+ + R ++ L DLL SD + L +T ET +IN E
Sbjct: 172 FNMRILYY------SRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEE 225
Query: 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI 299
L+ +K A L+N +++D A+ + L +G +AG LD E + + ++ NV++
Sbjct: 226 RLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVL 285
Query: 300 LP 301
P
Sbjct: 286 TP 287
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 13/176 (7%)
Query: 153 LCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212
L G RG LGI+G V ++D+ + K+ +A + + L
Sbjct: 136 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDI---ENKLPLGNATQ-VQHL 191
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
+DLL SDV+SLH T A+ + KPG+ L+N ++D A+ L
Sbjct: 192 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKH 251
Query: 273 LAGCALD-----GAEGPQWMEAWVREMPNVLILPR----SADYSEEVWMEIRDKAI 319
LAG A+D A + + E NVL+ P + + E + +E+ K I
Sbjct: 252 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLI 307
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 26/167 (15%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
T D+ A DV++L+C + ET +IN E L+ K GA+LVNT +L D A+ + L
Sbjct: 240 TREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALES 299
Query: 271 GTLAGCALDGAEGPQWM-------EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQ 323
G LAG A G W W R MP+ + P + S +L+
Sbjct: 300 GRLAGYA-----GDVWFPQPAPNDHPW-RTMPHNGMTPHISGTSLSAQTRYAAGTREILE 353
Query: 324 TFF-------------FDGVIPKNAISDTEGCENEIDDEIEQYNKLD 357
+F G+ A S ++G +E +Y KLD
Sbjct: 354 CYFEGRPIRDEYLIVQGGGLAGVGAHSYSKGNATGGSEEAAKYEKLD 400
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 26/167 (15%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
T D+ A DV++L+C + ET +IN E L+ K GA+LVNT +L D A+ + L
Sbjct: 241 TREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALES 300
Query: 271 GTLAGCALDGAEGPQWM-------EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQ 323
G LAG A G W W R MP+ + P + S +L+
Sbjct: 301 GRLAGYA-----GDVWFPQPAPNDHPW-RTMPHNGMTPHISGTSLSAQTRYAAGTREILE 354
Query: 324 TFF-------------FDGVIPKNAISDTEGCENEIDDEIEQYNKLD 357
+F G+ A S ++G +E +Y KLD
Sbjct: 355 CYFEGRPIRDEYLIVQGGGLAGVGAHSYSKGNATGGSEEAAKYEKLD 401
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 186 MSVLYFDVPEGKGKVTFPSAARRMDT------LNDLLAASDVISLHCAVTDETIQIINAE 239
M++L +D +P+ R + L LL SDV+++H + + T +IN E
Sbjct: 166 MNILLYD--------PYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEE 217
Query: 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-GAEGPQWMEAWVREMPNVL 298
L+ +K A L+NT ++D A+ + L +G +AG LD E P + + + NV+
Sbjct: 218 RLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVV 277
Query: 299 ILPR----SADYSEEVWMEIRDKAISVLQ 323
+ P + + E +E+ +K + +L+
Sbjct: 278 LTPHIGASTVEAQERAGVEVAEKVVKILK 306
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L DLL SD + L +T ET +IN E L+ K A L+N +++D A+ + L +G
Sbjct: 198 LEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEG 257
Query: 272 TLAGCALDGAEGPQWMEAWVREMPNVLILP 301
+AG LD E + + ++ NV++ P
Sbjct: 258 WIAGAGLDVFEEEPYYNEELFKLDNVVLTP 287
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 23/223 (10%)
Query: 162 GLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDL 215
G +G+VG F V+ +D + S AR + +L+DL
Sbjct: 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYD--------PYVSPARAAQLGIELLSLDDL 193
Query: 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275
LA +D IS+H T ET +I+ E L KPG +VN L+D+ A+ + G +
Sbjct: 194 LARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRA 253
Query: 276 CALDGAEGPQWMEAWVREMPNVLILPR-SADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334
LD ++ + E+ V++ P A +E D A SV G +
Sbjct: 254 AGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV--RLALAGEFVPD 311
Query: 335 AISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDIQVS 377
A++ G NE E+ + LD V L G + G L+D++ VS
Sbjct: 312 AVNVGGGVVNE---EVAPW--LDLVRKL-GVLAGVLSDELPVS 348
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 23/223 (10%)
Query: 162 GLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDL 215
G +G+VG F V+ +D + S AR + +L+DL
Sbjct: 141 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYD--------PYVSPARAAQLGIELLSLDDL 192
Query: 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275
LA +D IS+H T ET +I+ E L KPG +VN L+D+ A+ + G +
Sbjct: 193 LARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRA 252
Query: 276 CALDGAEGPQWMEAWVREMPNVLILPR-SADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334
LD ++ + E+ V++ P A +E D A SV G +
Sbjct: 253 AGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV--RLALAGEFVPD 310
Query: 335 AISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDIQVS 377
A++ G NE E+ + LD V L G + G L+D++ VS
Sbjct: 311 AVNVGGGVVNE---EVAPW--LDLVRKL-GVLAGVLSDELPVS 347
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273
+L + SD++ + C +T ET IIN E + + P L+N G +D+ + L++G L
Sbjct: 211 ELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL 270
Query: 274 AGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
G LD E + + + NV++LP + E + D + L+ F
Sbjct: 271 GGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
T D+ DV++L+C + ET +IN E L+ K GA++VNT +L D AV + L
Sbjct: 241 TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 300
Query: 271 GTLAGCALD 279
G LAG A D
Sbjct: 301 GRLAGYAGD 309
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
T D+ DV++L+C + ET +IN E L+ K GA++VNT +L D AV + L
Sbjct: 241 TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 300
Query: 271 GTLAGCALD 279
G LAG A D
Sbjct: 301 GRLAGYAGD 309
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
T D+ DV++L+C + ET +IN E L+ K GA++VNT +L D AV + L
Sbjct: 240 TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 299
Query: 271 GTLAGCALD 279
G LAG A D
Sbjct: 300 GRLAGYAGD 308
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 13/176 (7%)
Query: 153 LCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212
L G RG LGI+G V ++D+ + K+ +A + + L
Sbjct: 142 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDI---ENKLPLGNATQ-VQHL 197
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
+DLL SDV+SLH T A+ + KPG+ L+N ++D A+ L
Sbjct: 198 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKH 257
Query: 273 LAGCALD-----GAEGPQWMEAWVREMPNVLILPR----SADYSEEVWMEIRDKAI 319
LAG A+D A + + E NVL+ P + + E + +E+ K I
Sbjct: 258 LAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLI 313
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 19/167 (11%)
Query: 158 RRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA 217
+ R +G+VG +V+ DV E KG + + +L+++L
Sbjct: 142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQV----SLDEVLE 197
Query: 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277
SD+I++H E ++ + L+ +K GA LVN QL+D AV + + G L G
Sbjct: 198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYG 257
Query: 278 LDGAEGPQ---------------WMEAWVREMPNVLILPRSADYSEE 309
D +G E V P VLI P Y++E
Sbjct: 258 CDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDE 304
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
LY+ K V AR MD +++LL SD++ L +T +T IIN E ++ ++ G
Sbjct: 172 LYYWSRHRKVNVEKELKARYMD-IDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GK 229
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
+LVN G L+D+ AV + + G L G A D
Sbjct: 230 YLVNIGRGALVDEKAVTEAIKQGKLKGYATD 260
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 160 CRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS 219
+G L I+G F M VL G+ + F ++ LN +LA +
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVS-RSGRERAGF-DQVYQLPALNKMLAQA 195
Query: 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
DVI T ET + A +H KPGA L N G +++ + L G L LD
Sbjct: 196 DVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLD 255
Query: 280 -------GAEGPQWMEAWVREMPNVLILPRSADYS 307
A+ P W + PN++I P ++ YS
Sbjct: 256 VFEQEPLPADSPLWGQ------PNLIITPHNSAYS 284
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Query: 161 RGLVLGIVGXXXXXXXXXXXXXX-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS 219
RG VLG VG M ++Y+DV + A R+D+L +L S
Sbjct: 162 RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRS 221
Query: 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
D +S+ T +I+ +KPG+ +VNT ++ A+ L G L LD
Sbjct: 222 DCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLD 281
Query: 280 GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329
E + + EM +V + + E + E ++ + F G
Sbjct: 282 VHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQG 331
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Query: 161 RGLVLGIVGXXXXXXXXXXXXXX-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS 219
RG VLG VG M ++Y+DV + A R+D+L +L S
Sbjct: 162 RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRS 221
Query: 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
D +S+ T +I+ +KPG+ +VNT ++ A+ L G L LD
Sbjct: 222 DCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLD 281
Query: 280 GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329
E + + EM +V + + E + E ++ + F G
Sbjct: 282 VHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQG 331
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L +LL +DV+SLH +T ET +++N E L +K GA L+NT L+D A+ + L
Sbjct: 186 SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-R 244
Query: 271 GTLAGCALDGAEGPQWMEAW--VREMPNVLILP 301
G L G LD + P+ + + +PN +I P
Sbjct: 245 GHLFGAGLDVTD-PEPLPPGHPLYALPNAVITP 276
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Query: 161 RGLVLGIVGXXXXXXXXXXXXXX-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS 219
RG VLG VG M ++Y+DV + A R+D+L +L S
Sbjct: 162 RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRS 221
Query: 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
D +S+ T +I+ +KPG+ +VNT ++ A+ L G L LD
Sbjct: 222 DCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLD 281
Query: 280 GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329
E + + EM +V + + E + E ++ + F G
Sbjct: 282 VHEFEPNVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQG 331
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Query: 162 GLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDV 221
G +G VG F ++LY D + ++ + A+ ++ LN++L DV
Sbjct: 170 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 229
Query: 222 ISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281
I ++ +T++T + N E + +K G +VN +++ AV + G + G + D
Sbjct: 230 IVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVW 289
Query: 282 EGPQWM---EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
+ PQ W R MPN + P ++ + + + +L+ +F
Sbjct: 290 D-PQPAPKDHPW-RYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 335
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Query: 162 GLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDV 221
G +G VG F ++LY D + ++ + A+ ++ LN++L DV
Sbjct: 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 223
Query: 222 ISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281
I ++ +T++T + N E + +K G +VN +++ AV + G + G + D
Sbjct: 224 IVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVW 283
Query: 282 EGPQWM---EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
+ PQ W R MPN + P ++ + + + +L+ +F
Sbjct: 284 D-PQPAPKDHPW-RYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 329
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 158 RRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA 217
R +G LGI G F M+VL + K + A ++ + L
Sbjct: 156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAV-AESKDALFE 214
Query: 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277
SDV+S+H + DET II L +KP A VNT ++L+++ + L G A
Sbjct: 215 QSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAA 274
Query: 278 LD 279
+D
Sbjct: 275 ID 276
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273
DL SDV+++ A + T I++A LQ + P +VN ++D+ A+ + L GT+
Sbjct: 218 DLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTI 277
Query: 274 AGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309
AG LD + + PN ++ P + E
Sbjct: 278 AGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVE 313
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247
+LY+D ARR++ + +L+A +D+++++ + T +IN E L K G
Sbjct: 191 LLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKG 250
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWM-------EAWVREMPNVL-- 298
A+LVNT + C + + L L G G W W R+M N
Sbjct: 251 AWLVNTARGAI---CVAED--VAAALESGQLRGYGGDVWFPQPAPKDHPW-RDMRNKYGA 304
Query: 299 ---ILPRSADYSEEVWMEIRDKAISVLQTFF 326
+ P + + + +++L++FF
Sbjct: 305 GNAMTPHYSGTTLDAQTRYAQGTVNILESFF 335
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 203 PSAARRMD----TLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTG 254
P AR D +L LLA +DVISLH + + T +++ L ++PG +LVN
Sbjct: 148 PRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNAS 207
Query: 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQ 285
++D+ A+++LL G ALD EG PQ
Sbjct: 208 RGAVVDNQALRRLLEGGADLEVALDVWEGEPQ 239
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247
+LY+D ARR++ + +L+A +D+++++ + T +IN E L K G
Sbjct: 192 LLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKG 251
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
A+LVNT + V L G L G D
Sbjct: 252 AWLVNTARGAICVAEDVAAALESGQLRGYGGD 283
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 162 GLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDV 221
G +GIVG M VL +D+ + + K +A + +L +LL SDV
Sbjct: 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINA--KAVSLEELLKNSDV 199
Query: 222 ISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
ISLH V+ + II+ + +K +VNT + ++ A+ + G + A D
Sbjct: 200 ISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATD 257
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 16/248 (6%)
Query: 77 RRLRP-YQLILCLGSSDRTVDSALAADLGLRLIH---VDTSRAEEIADTVMXXXXXXXXX 132
R+L+P + I L +D A A LG++++H V + EIA ++
Sbjct: 89 RKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIA-XLLVLNACRRGY 147
Query: 133 XXXXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSVLYFD 192
W G Q L G+ R LGI G F +++ Y +
Sbjct: 148 EADRXVRSGSWPGW-GPTQLLGXGLTGRR---LGIFGXGRIGRAIATRARGFGLAIHYHN 203
Query: 193 VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252
+ A DTL+ LL ASD+ + E ++ + + I GA ++N
Sbjct: 204 --RTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVIN 261
Query: 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV-- 310
L++D A+ + L L LD ++ R + N+ + P + E
Sbjct: 262 ISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRD 321
Query: 311 ---WMEIR 315
W+ I+
Sbjct: 322 AXGWLLIQ 329
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 203 PSAAR----RMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTG 254
P AAR TL++L+ +DV++ H + + T+ + + ++ +KPGA L+N
Sbjct: 151 PRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINAC 210
Query: 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEG 283
++D+ A+ L G LD EG
Sbjct: 211 RGPVVDNAALLARLNAGQPLSVVLDVWEG 239
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 162 GLVLGIVGXXXXXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDV 221
G LGI+G F M + +D P +V+ +++ L ++ D
Sbjct: 165 GKTLGILGLGRIGREVATRMQSFGMKTIGYD-PIISPEVSASFGVQQL-PLEEIWPLCDF 222
Query: 222 ISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
I++H + T ++N K G +VN ++D+ A+ + L G AG ALD
Sbjct: 223 ITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 280
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GA 281
T +T+ IIN+E L + GA+++N + + + L G L G LD
Sbjct: 204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQ 263
Query: 282 EGPQWMEAWVREMPNVLILPRSAD 305
E P W V P++ + R A+
Sbjct: 264 ESPLWRHPRVAXTPHIAAVTRPAE 287
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L D+L SD I + AVT E + + AE + GA + + ++D A+ +
Sbjct: 223 SLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSS 282
Query: 271 GTLAGCALDGAEGPQWMEAWVREMPNVL 298
G + + E P ++ VR + +
Sbjct: 283 GHIVAASDVYPEEPLPLDHPVRSLKGFI 310
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 209 MDTLNDLLAASDVISLHCAVTD---ETIQIINAECLQHIKPGAFL 250
++TL++LLAA + + AV D E CLQ ++PG L
Sbjct: 131 LETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGIL 175
>pdb|3GAF|A Chain A, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|B Chain B, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|C Chain C, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|D Chain D, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|E Chain E, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|F Chain F, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|G Chain G, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|H Chain H, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
Length = 256
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 PSVVALNCIEDCVLEQDSLAGV-------ALVEHVPLGRLADGKIEAAAAVLLHS 67
P + +N I ++ D+LA V A+++H PLGRL + + A AA+ L S
Sbjct: 180 PMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCS 234
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG---P 284
+T T + + E Q K L+N G +D A+ L L+ ALD E P
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 285 QWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCE 343
W R+ +VLI P + + + F DG + +N + G E
Sbjct: 261 TDHPLWQRD--DVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVDLNRGYE 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,060,285
Number of Sequences: 62578
Number of extensions: 591281
Number of successful extensions: 1327
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 67
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)