Query 007040
Match_columns 620
No_of_seqs 277 out of 2705
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 18:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 1.9E-64 4E-69 531.6 31.8 281 54-342 40-324 (324)
2 PRK15409 bifunctional glyoxyla 100.0 3.9E-63 8.5E-68 521.8 33.8 314 18-339 1-321 (323)
3 COG1052 LdhA Lactate dehydroge 100.0 5.6E-63 1.2E-67 520.2 32.6 315 19-339 2-324 (324)
4 PRK08410 2-hydroxyacid dehydro 100.0 1.2E-61 2.6E-66 508.1 31.4 300 22-330 3-310 (311)
5 PRK13243 glyoxylate reductase; 100.0 3E-61 6.4E-66 509.4 33.0 316 19-340 2-325 (333)
6 PRK06487 glycerate dehydrogena 100.0 3.3E-61 7.1E-66 506.0 32.5 272 55-337 41-317 (317)
7 PRK06932 glycerate dehydrogena 100.0 2.3E-60 5E-65 499.0 30.8 268 55-330 40-314 (314)
8 PRK11790 D-3-phosphoglycerate 100.0 1.2E-59 2.5E-64 509.5 35.1 309 18-338 9-327 (409)
9 PLN03139 formate dehydrogenase 100.0 1.9E-59 4.1E-64 503.3 35.2 286 55-344 93-383 (386)
10 PLN02306 hydroxypyruvate reduc 100.0 9.6E-60 2.1E-64 506.2 32.3 321 16-340 12-357 (386)
11 PRK07574 formate dehydrogenase 100.0 1.6E-59 3.5E-64 503.9 31.9 307 25-335 51-365 (385)
12 PLN02928 oxidoreductase family 100.0 3.3E-59 7E-64 496.4 32.7 313 14-335 13-343 (347)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 5E-58 1.1E-62 510.8 32.2 279 55-340 36-314 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 4E-57 8.6E-62 503.6 32.4 278 55-340 38-315 (526)
15 PRK12480 D-lactate dehydrogena 100.0 3.9E-56 8.5E-61 469.9 30.3 274 55-337 41-330 (330)
16 KOG0068 D-3-phosphoglycerate d 100.0 4.1E-56 8.9E-61 458.8 25.2 309 21-340 8-323 (406)
17 PRK15469 ghrA bifunctional gly 100.0 8.6E-55 1.9E-59 456.6 31.4 270 57-342 36-312 (312)
18 PRK08605 D-lactate dehydrogena 100.0 1.3E-54 2.8E-59 458.7 30.3 275 55-337 41-332 (332)
19 PRK00257 erythronate-4-phospha 100.0 6.8E-54 1.5E-58 459.9 31.3 280 21-334 2-285 (381)
20 PRK15438 erythronate-4-phospha 100.0 5.1E-54 1.1E-58 460.0 30.3 273 21-326 2-278 (378)
21 PRK06436 glycerate dehydrogena 100.0 1.8E-52 3.9E-57 437.4 30.8 262 57-345 32-296 (303)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 9.3E-53 2E-57 441.0 24.9 275 57-336 58-334 (336)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 8.7E-44 1.9E-48 344.6 12.9 177 123-304 1-178 (178)
24 KOG0067 Transcription factor C 100.0 5.4E-43 1.2E-47 364.9 7.0 399 17-598 29-435 (435)
25 PTZ00075 Adenosylhomocysteinas 99.8 8.7E-19 1.9E-23 192.4 16.5 170 88-288 198-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.7 3.2E-18 7E-23 178.4 10.6 154 70-257 81-243 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.7 4.3E-17 9.4E-22 150.4 12.5 98 22-122 1-101 (133)
28 PRK08306 dipicolinate synthase 99.5 4.5E-14 9.9E-19 147.9 13.1 169 55-256 51-243 (296)
29 PLN02494 adenosylhomocysteinas 99.5 1.4E-14 3E-19 159.3 8.3 121 159-285 251-374 (477)
30 PRK13403 ketol-acid reductoiso 99.4 3E-13 6.6E-18 142.7 8.1 94 158-253 12-105 (335)
31 TIGR00936 ahcY adenosylhomocys 99.4 4.7E-13 1E-17 145.7 9.5 120 159-283 192-312 (406)
32 PF03446 NAD_binding_2: NAD bi 99.4 4.9E-13 1.1E-17 127.9 7.0 116 163-280 2-118 (163)
33 COG2084 MmsB 3-hydroxyisobutyr 99.3 4.5E-12 9.9E-17 132.2 9.7 116 163-280 1-119 (286)
34 TIGR01505 tartro_sem_red 2-hyd 99.2 2.7E-11 5.9E-16 125.7 9.1 114 164-279 1-116 (291)
35 PRK05476 S-adenosyl-L-homocyst 99.2 3.2E-11 6.9E-16 132.2 9.4 155 88-266 156-312 (425)
36 PRK11559 garR tartronate semia 99.2 3.8E-11 8.2E-16 124.7 9.2 116 163-280 3-120 (296)
37 PRK15461 NADH-dependent gamma- 99.2 5.8E-11 1.3E-15 124.1 9.4 115 164-280 3-119 (296)
38 PRK12490 6-phosphogluconate de 99.2 6.5E-11 1.4E-15 123.9 9.7 115 163-280 1-118 (299)
39 PRK09599 6-phosphogluconate de 99.1 1.9E-10 4.2E-15 120.3 9.5 115 163-280 1-118 (301)
40 PF00670 AdoHcyase_NAD: S-aden 99.1 1.2E-10 2.7E-15 112.2 6.3 102 159-265 20-122 (162)
41 PLN02256 arogenate dehydrogena 99.0 9.4E-10 2E-14 116.1 11.4 109 160-270 34-143 (304)
42 PLN02350 phosphogluconate dehy 99.0 6.6E-10 1.4E-14 124.1 9.0 114 164-280 8-131 (493)
43 PRK15059 tartronate semialdehy 99.0 1.2E-09 2.6E-14 114.4 9.9 115 163-280 1-117 (292)
44 KOG0409 Predicted dehydrogenas 99.0 1E-09 2.2E-14 114.2 7.9 119 160-280 33-154 (327)
45 PRK05479 ketol-acid reductoiso 99.0 8.3E-10 1.8E-14 117.6 6.4 96 158-256 13-109 (330)
46 PLN02712 arogenate dehydrogena 99.0 1.5E-09 3.3E-14 125.3 9.1 113 156-270 363-476 (667)
47 TIGR00872 gnd_rel 6-phosphoglu 98.9 3E-09 6.6E-14 111.4 9.0 114 163-280 1-117 (298)
48 cd00401 AdoHcyase S-adenosyl-L 98.9 3.2E-09 6.9E-14 116.3 9.0 103 159-266 199-302 (413)
49 PLN02858 fructose-bisphosphate 98.9 3.5E-09 7.5E-14 130.6 10.3 120 161-280 3-124 (1378)
50 TIGR01692 HIBADH 3-hydroxyisob 98.9 3.5E-09 7.5E-14 110.2 8.2 112 167-280 1-114 (288)
51 PTZ00142 6-phosphogluconate de 98.9 4.5E-09 9.7E-14 117.0 9.2 114 164-280 3-125 (470)
52 PLN02858 fructose-bisphosphate 98.9 5E-09 1.1E-13 129.2 9.6 118 162-281 324-445 (1378)
53 PRK07417 arogenate dehydrogena 98.8 1.1E-08 2.4E-13 106.0 9.8 140 163-305 1-143 (279)
54 TIGR00873 gnd 6-phosphoglucona 98.8 1.2E-08 2.6E-13 113.6 9.3 113 165-280 2-122 (467)
55 PRK08655 prephenate dehydrogen 98.8 3.8E-08 8.3E-13 108.7 12.1 134 163-303 1-137 (437)
56 PRK07502 cyclohexadienyl dehyd 98.8 3E-08 6.5E-13 104.0 10.8 139 162-305 6-155 (307)
57 PRK06545 prephenate dehydrogen 98.7 4.3E-08 9.4E-13 105.4 9.9 136 163-305 1-150 (359)
58 PRK14619 NAD(P)H-dependent gly 98.7 5.2E-08 1.1E-12 102.5 10.1 82 161-257 3-85 (308)
59 PLN02545 3-hydroxybutyryl-CoA 98.7 7.9E-08 1.7E-12 100.2 11.2 129 163-303 5-158 (295)
60 PRK09260 3-hydroxybutyryl-CoA 98.7 1.3E-07 2.7E-12 98.5 12.1 129 163-302 2-155 (288)
61 PLN02712 arogenate dehydrogena 98.7 3.4E-08 7.5E-13 114.3 8.5 109 160-270 50-159 (667)
62 PRK11199 tyrA bifunctional cho 98.7 2.7E-07 5.8E-12 100.1 14.9 91 161-267 97-188 (374)
63 COG0287 TyrA Prephenate dehydr 98.7 8.5E-08 1.8E-12 100.3 10.4 136 162-304 3-146 (279)
64 PRK08507 prephenate dehydrogen 98.7 1.1E-07 2.4E-12 98.3 10.3 130 163-303 1-142 (275)
65 PLN02688 pyrroline-5-carboxyla 98.6 1.9E-07 4E-12 95.6 11.5 102 163-268 1-107 (266)
66 PRK07819 3-hydroxybutyryl-CoA 98.6 2.1E-07 4.5E-12 97.3 11.0 162 163-345 6-194 (286)
67 TIGR00465 ilvC ketol-acid redu 98.6 7.1E-08 1.5E-12 102.4 7.5 96 160-258 1-97 (314)
68 PRK08818 prephenate dehydrogen 98.6 1E-06 2.2E-11 95.6 15.6 121 161-302 3-130 (370)
69 PRK07530 3-hydroxybutyryl-CoA 98.6 4.6E-07 9.9E-12 94.4 12.3 138 163-313 5-167 (292)
70 PRK07066 3-hydroxybutyryl-CoA 98.6 3.1E-07 6.8E-12 97.8 11.1 105 163-269 8-132 (321)
71 TIGR03026 NDP-sugDHase nucleot 98.6 7.4E-07 1.6E-11 97.4 13.8 106 163-268 1-134 (411)
72 COG0499 SAM1 S-adenosylhomocys 98.5 1.7E-07 3.6E-12 99.9 7.7 103 159-266 206-309 (420)
73 PRK08293 3-hydroxybutyryl-CoA 98.5 9.4E-07 2E-11 92.0 13.0 140 163-313 4-168 (287)
74 PRK05225 ketol-acid reductoiso 98.5 9.8E-08 2.1E-12 105.0 5.0 93 157-252 31-129 (487)
75 PRK15182 Vi polysaccharide bio 98.5 7.7E-07 1.7E-11 98.2 11.3 105 162-268 6-134 (425)
76 COG1023 Gnd Predicted 6-phosph 98.5 4.2E-07 9E-12 92.5 8.2 117 163-282 1-120 (300)
77 TIGR00518 alaDH alanine dehydr 98.5 1.7E-07 3.6E-12 101.6 5.7 149 160-326 165-324 (370)
78 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.4E-06 3.1E-11 91.7 12.5 134 163-306 3-160 (308)
79 PRK11064 wecC UDP-N-acetyl-D-m 98.5 6.8E-07 1.5E-11 98.2 10.4 107 163-270 4-135 (415)
80 PF03807 F420_oxidored: NADP o 98.5 1.3E-07 2.8E-12 81.9 3.9 90 164-256 1-96 (96)
81 PRK14806 bifunctional cyclohex 98.4 8.1E-07 1.7E-11 103.7 10.9 141 163-305 4-153 (735)
82 PRK12491 pyrroline-5-carboxyla 98.4 4.3E-07 9.3E-12 94.4 7.5 102 163-268 3-109 (272)
83 PRK14194 bifunctional 5,10-met 98.4 6.1E-07 1.3E-11 94.7 8.6 78 159-257 156-234 (301)
84 cd01065 NAD_bind_Shikimate_DH 98.4 4.9E-07 1.1E-11 84.6 7.0 114 160-280 17-138 (155)
85 PRK07531 bifunctional 3-hydrox 98.4 1.6E-06 3.5E-11 97.2 11.7 119 163-285 5-143 (495)
86 cd01075 NAD_bind_Leu_Phe_Val_D 98.4 9.9E-07 2.1E-11 87.8 8.3 108 159-274 25-134 (200)
87 PRK14618 NAD(P)H-dependent gly 98.4 6.8E-07 1.5E-11 94.6 7.6 103 162-270 4-123 (328)
88 PRK06035 3-hydroxyacyl-CoA deh 98.4 3.6E-06 7.7E-11 87.8 12.8 116 163-282 4-146 (291)
89 TIGR01724 hmd_rel H2-forming N 98.3 4.9E-06 1.1E-10 88.3 13.2 93 174-270 32-129 (341)
90 PRK00094 gpsA NAD(P)H-dependen 98.3 7.3E-07 1.6E-11 93.2 6.8 93 163-257 2-108 (325)
91 PRK14189 bifunctional 5,10-met 98.3 1.2E-06 2.7E-11 91.8 8.4 79 159-258 155-234 (285)
92 PRK05808 3-hydroxybutyryl-CoA 98.3 5E-06 1.1E-10 86.2 12.7 161 163-343 4-188 (282)
93 PRK08268 3-hydroxy-acyl-CoA de 98.3 3.5E-06 7.6E-11 94.9 12.1 116 163-283 8-148 (507)
94 PF07991 IlvN: Acetohydroxy ac 98.3 5.4E-07 1.2E-11 87.1 4.7 91 160-252 2-93 (165)
95 PRK13302 putative L-aspartate 98.3 1.2E-06 2.7E-11 91.1 6.9 108 162-274 6-118 (271)
96 PRK06130 3-hydroxybutyryl-CoA 98.3 7E-06 1.5E-10 86.1 12.2 104 163-269 5-128 (311)
97 PRK07679 pyrroline-5-carboxyla 98.3 1.7E-06 3.8E-11 89.7 7.5 104 162-269 3-112 (279)
98 cd01080 NAD_bind_m-THF_DH_Cycl 98.2 3.1E-06 6.6E-11 82.5 8.3 89 159-275 41-130 (168)
99 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 4.7E-06 1E-10 93.9 10.6 118 162-284 5-147 (503)
100 PRK14188 bifunctional 5,10-met 98.2 3.6E-06 7.9E-11 88.8 8.6 78 159-258 155-234 (296)
101 PRK09287 6-phosphogluconate de 98.2 3.8E-06 8.3E-11 93.6 8.5 105 173-280 1-113 (459)
102 KOG1370 S-adenosylhomocysteine 98.2 2.7E-06 5.9E-11 89.0 6.5 94 160-258 212-305 (434)
103 PRK06476 pyrroline-5-carboxyla 98.2 2.8E-06 6E-11 87.0 6.1 102 163-270 1-107 (258)
104 PRK14179 bifunctional 5,10-met 98.2 6.6E-06 1.4E-10 86.3 9.0 78 159-257 155-233 (284)
105 PRK07680 late competence prote 98.1 3.4E-06 7.4E-11 87.1 6.6 103 163-269 1-109 (273)
106 PRK15057 UDP-glucose 6-dehydro 98.1 9.2E-06 2E-10 88.7 9.8 106 163-271 1-134 (388)
107 PRK05472 redox-sensing transcr 98.1 2E-06 4.3E-11 86.1 4.1 136 112-270 57-201 (213)
108 PF01488 Shikimate_DH: Shikima 98.1 1.1E-06 2.4E-11 82.0 2.0 94 159-255 9-110 (135)
109 PF10727 Rossmann-like: Rossma 98.0 5.8E-06 1.2E-10 77.2 5.2 93 160-254 8-104 (127)
110 TIGR00561 pntA NAD(P) transhyd 98.0 4E-05 8.6E-10 86.4 12.7 180 59-255 64-285 (511)
111 PRK14175 bifunctional 5,10-met 98.0 1.6E-05 3.5E-10 83.6 8.7 78 159-257 155-233 (286)
112 PF01210 NAD_Gly3P_dh_N: NAD-d 98.0 9.9E-06 2.2E-10 77.3 5.7 92 164-257 1-106 (157)
113 PF02737 3HCDH_N: 3-hydroxyacy 97.9 2.3E-05 4.9E-10 76.8 7.5 114 164-281 1-138 (180)
114 PRK06928 pyrroline-5-carboxyla 97.9 2E-05 4.4E-10 82.0 7.5 102 163-268 2-110 (277)
115 PRK11880 pyrroline-5-carboxyla 97.9 1.5E-05 3.3E-10 81.6 6.4 101 163-269 3-107 (267)
116 COG2085 Predicted dinucleotide 97.9 2.4E-05 5.2E-10 78.7 7.2 90 163-255 2-94 (211)
117 cd05191 NAD_bind_amino_acid_DH 97.9 5E-05 1.1E-09 65.4 8.3 66 159-254 20-86 (86)
118 PF03721 UDPG_MGDP_dh_N: UDP-g 97.8 2.2E-05 4.7E-10 77.4 5.1 137 163-299 1-171 (185)
119 PF01262 AlaDh_PNT_C: Alanine 97.8 1.9E-05 4.1E-10 76.3 4.5 97 158-254 16-139 (168)
120 PF02882 THF_DHG_CYH_C: Tetrah 97.8 8.5E-05 1.8E-09 72.0 8.9 79 159-258 33-112 (160)
121 PRK10792 bifunctional 5,10-met 97.8 9.3E-05 2E-09 77.8 9.7 78 159-257 156-234 (285)
122 PF02153 PDH: Prephenate dehyd 97.8 6E-05 1.3E-09 77.8 7.7 126 177-304 1-133 (258)
123 TIGR01035 hemA glutamyl-tRNA r 97.8 2.4E-05 5.2E-10 86.1 5.0 94 159-255 177-278 (417)
124 PRK13304 L-aspartate dehydroge 97.8 4.1E-05 9E-10 79.4 6.3 105 163-272 2-113 (265)
125 PRK14176 bifunctional 5,10-met 97.7 9.9E-05 2.1E-09 77.7 8.8 77 159-256 161-238 (287)
126 KOG2380 Prephenate dehydrogena 97.7 0.00014 3E-09 77.5 9.8 140 161-305 51-193 (480)
127 PRK14178 bifunctional 5,10-met 97.7 7.8E-05 1.7E-09 78.2 7.9 78 159-257 149-227 (279)
128 PRK12557 H(2)-dependent methyl 97.7 9E-05 2E-09 79.8 7.9 95 174-269 32-132 (342)
129 PRK14191 bifunctional 5,10-met 97.7 0.00011 2.3E-09 77.4 8.2 78 159-257 154-232 (285)
130 PRK14192 bifunctional 5,10-met 97.7 0.00013 2.9E-09 76.6 8.8 78 159-257 156-234 (283)
131 cd05213 NAD_bind_Glutamyl_tRNA 97.7 6.2E-05 1.4E-09 79.7 6.4 94 160-255 176-274 (311)
132 PRK09424 pntA NAD(P) transhydr 97.7 0.00027 5.8E-09 79.9 11.4 182 59-255 65-286 (509)
133 TIGR01915 npdG NADPH-dependent 97.7 6.9E-05 1.5E-09 75.2 6.0 91 163-256 1-103 (219)
134 PTZ00431 pyrroline carboxylate 97.7 0.00017 3.7E-09 74.3 9.0 96 162-268 3-102 (260)
135 PLN00203 glutamyl-tRNA reducta 97.6 4.5E-05 9.8E-10 86.3 4.9 84 160-246 264-354 (519)
136 PRK08229 2-dehydropantoate 2-r 97.6 0.00011 2.3E-09 77.9 7.5 106 163-273 3-125 (341)
137 PRK12921 2-dehydropantoate 2-r 97.6 0.00016 3.5E-09 75.1 8.2 108 163-274 1-121 (305)
138 PRK07634 pyrroline-5-carboxyla 97.6 0.00012 2.7E-09 73.8 7.1 104 162-270 4-113 (245)
139 cd05212 NAD_bind_m-THF_DH_Cycl 97.6 0.00043 9.3E-09 65.7 10.0 78 159-257 25-103 (140)
140 PRK06522 2-dehydropantoate 2-r 97.6 0.00018 4E-09 74.5 8.2 108 163-274 1-119 (304)
141 PRK00045 hemA glutamyl-tRNA re 97.6 8.7E-05 1.9E-09 81.9 5.8 93 159-254 179-280 (423)
142 PRK14190 bifunctional 5,10-met 97.5 0.00037 7.9E-09 73.4 9.5 79 159-258 155-234 (284)
143 cd01079 NAD_bind_m-THF_DH NAD 97.5 0.00049 1.1E-08 68.7 9.8 91 158-255 58-157 (197)
144 PRK06141 ornithine cyclodeamin 97.5 0.00015 3.3E-09 76.9 6.5 89 161-255 124-220 (314)
145 COG0345 ProC Pyrroline-5-carbo 97.5 0.00023 4.9E-09 74.3 7.3 99 163-269 2-108 (266)
146 PRK14170 bifunctional 5,10-met 97.5 0.0006 1.3E-08 71.8 10.2 78 159-257 154-232 (284)
147 PRK14183 bifunctional 5,10-met 97.5 0.00045 9.7E-09 72.6 8.9 78 159-257 154-232 (281)
148 TIGR01546 GAPDH-II_archae glyc 97.4 0.00031 6.8E-09 75.5 7.9 86 165-253 1-107 (333)
149 PLN02353 probable UDP-glucose 97.4 0.0017 3.6E-08 73.0 13.8 136 163-299 2-176 (473)
150 PRK14169 bifunctional 5,10-met 97.4 0.00054 1.2E-08 72.1 9.2 78 159-257 153-231 (282)
151 COG0677 WecC UDP-N-acetyl-D-ma 97.4 0.0006 1.3E-08 74.3 9.7 140 163-310 10-187 (436)
152 PRK14186 bifunctional 5,10-met 97.4 0.00057 1.2E-08 72.3 9.3 115 159-310 155-270 (297)
153 PRK14166 bifunctional 5,10-met 97.4 0.00058 1.2E-08 71.8 9.2 78 159-257 154-232 (282)
154 PRK14177 bifunctional 5,10-met 97.4 0.00059 1.3E-08 71.8 9.2 78 159-257 156-234 (284)
155 TIGR00507 aroE shikimate 5-deh 97.4 0.00031 6.7E-09 72.8 6.8 114 160-280 115-236 (270)
156 PRK14172 bifunctional 5,10-met 97.4 0.00065 1.4E-08 71.3 9.2 78 159-257 155-233 (278)
157 cd05311 NAD_bind_2_malic_enz N 97.4 0.00075 1.6E-08 68.7 9.3 153 159-326 22-195 (226)
158 PRK14171 bifunctional 5,10-met 97.4 0.00066 1.4E-08 71.6 9.1 78 159-257 156-234 (288)
159 PLN02897 tetrahydrofolate dehy 97.4 0.00064 1.4E-08 73.1 9.0 78 159-257 211-289 (345)
160 PRK00258 aroE shikimate 5-dehy 97.4 0.00015 3.3E-09 75.5 4.2 71 159-229 120-196 (278)
161 PRK14173 bifunctional 5,10-met 97.4 0.00071 1.5E-08 71.3 9.1 79 159-258 152-231 (287)
162 TIGR02371 ala_DH_arch alanine 97.4 0.00042 9.1E-09 74.0 7.5 89 162-256 128-224 (325)
163 PLN02516 methylenetetrahydrofo 97.3 0.0008 1.7E-08 71.3 9.2 132 159-326 164-297 (299)
164 PRK14187 bifunctional 5,10-met 97.3 0.0008 1.7E-08 71.1 9.2 78 159-257 157-235 (294)
165 PRK14180 bifunctional 5,10-met 97.3 0.00082 1.8E-08 70.7 9.1 77 159-256 155-232 (282)
166 PLN02616 tetrahydrofolate dehy 97.3 0.00079 1.7E-08 72.8 9.0 79 158-257 227-306 (364)
167 PRK14181 bifunctional 5,10-met 97.3 0.00091 2E-08 70.5 9.2 78 159-257 150-232 (287)
168 PRK14182 bifunctional 5,10-met 97.3 0.00093 2E-08 70.3 9.2 78 159-257 154-232 (282)
169 PRK14174 bifunctional 5,10-met 97.3 0.00076 1.6E-08 71.4 8.5 78 159-257 156-238 (295)
170 COG0059 IlvC Ketol-acid reduct 97.3 0.00037 8E-09 73.5 6.0 90 159-250 15-105 (338)
171 COG0190 FolD 5,10-methylene-te 97.3 0.00071 1.5E-08 70.9 8.1 112 159-312 153-266 (283)
172 PTZ00345 glycerol-3-phosphate 97.3 0.0011 2.4E-08 72.1 9.7 97 160-258 9-133 (365)
173 COG0240 GpsA Glycerol-3-phosph 97.2 0.00088 1.9E-08 71.7 8.2 101 163-265 2-116 (329)
174 TIGR02354 thiF_fam2 thiamine b 97.2 0.00094 2E-08 66.8 8.0 96 158-254 17-145 (200)
175 PRK14184 bifunctional 5,10-met 97.2 0.001 2.2E-08 70.1 8.4 77 159-256 154-235 (286)
176 PRK14620 NAD(P)H-dependent gly 97.2 0.0012 2.7E-08 69.8 9.1 93 163-257 1-109 (326)
177 PRK14193 bifunctional 5,10-met 97.2 0.0013 2.9E-08 69.2 9.1 110 159-310 155-267 (284)
178 PRK07340 ornithine cyclodeamin 97.2 0.00066 1.4E-08 71.9 6.8 89 161-256 124-219 (304)
179 COG0686 Ald Alanine dehydrogen 97.2 0.00035 7.6E-09 74.0 4.5 147 158-324 164-323 (371)
180 TIGR03376 glycerol3P_DH glycer 97.2 0.0016 3.4E-08 70.4 9.3 92 164-257 1-119 (342)
181 PRK14185 bifunctional 5,10-met 97.1 0.0017 3.7E-08 68.7 9.1 78 159-257 154-236 (293)
182 PRK12439 NAD(P)H-dependent gly 97.1 0.00099 2.1E-08 71.5 7.3 91 163-256 8-113 (341)
183 COG0362 Gnd 6-phosphogluconate 97.1 0.0064 1.4E-07 66.4 13.2 181 163-356 4-195 (473)
184 PRK11730 fadB multifunctional 97.1 0.0024 5.1E-08 75.2 10.9 116 163-282 314-453 (715)
185 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.00052 1.1E-08 67.3 4.6 95 159-257 25-132 (194)
186 KOG0067 Transcription factor C 97.1 5.2E-05 1.1E-09 81.4 -2.9 204 125-340 20-231 (435)
187 PRK06249 2-dehydropantoate 2-r 97.1 0.0046 9.9E-08 65.4 11.6 112 162-277 5-128 (313)
188 PRK06444 prephenate dehydrogen 97.1 0.0023 4.9E-08 64.1 8.8 62 163-258 1-63 (197)
189 TIGR02441 fa_ox_alpha_mit fatt 97.1 0.0021 4.5E-08 76.0 9.8 116 163-282 336-475 (737)
190 PRK13940 glutamyl-tRNA reducta 97.1 0.00088 1.9E-08 74.0 6.3 79 159-240 178-261 (414)
191 PRK14167 bifunctional 5,10-met 97.1 0.0024 5.1E-08 67.8 9.1 78 159-257 154-236 (297)
192 PRK08618 ornithine cyclodeamin 97.0 0.0013 2.9E-08 70.1 7.2 89 161-256 126-223 (325)
193 PRK14168 bifunctional 5,10-met 97.0 0.0025 5.4E-08 67.6 9.0 78 159-257 158-240 (297)
194 TIGR02992 ectoine_eutC ectoine 97.0 0.0017 3.7E-08 69.3 7.9 88 161-254 128-224 (326)
195 TIGR02440 FadJ fatty oxidation 97.0 0.0034 7.5E-08 73.7 10.9 116 163-282 305-445 (699)
196 PRK11154 fadJ multifunctional 97.0 0.0049 1.1E-07 72.5 12.0 116 163-282 310-450 (708)
197 COG1250 FadB 3-hydroxyacyl-CoA 97.0 0.0077 1.7E-07 64.2 12.3 117 162-282 3-143 (307)
198 PRK09310 aroDE bifunctional 3- 97.0 0.00095 2.1E-08 75.0 5.8 71 158-229 328-401 (477)
199 TIGR02437 FadB fatty oxidation 97.0 0.0037 8.1E-08 73.6 10.8 115 163-281 314-452 (714)
200 PRK06046 alanine dehydrogenase 96.9 0.002 4.3E-08 68.9 7.4 87 162-255 129-224 (326)
201 PF02423 OCD_Mu_crystall: Orni 96.9 0.0014 3E-08 69.8 5.9 91 163-257 129-227 (313)
202 smart00859 Semialdhyde_dh Semi 96.9 0.0025 5.4E-08 57.9 6.6 90 164-255 1-100 (122)
203 PRK00676 hemA glutamyl-tRNA re 96.9 0.0029 6.2E-08 68.3 8.1 81 158-243 170-251 (338)
204 PF13241 NAD_binding_7: Putati 96.8 0.001 2.2E-08 59.4 3.7 88 159-254 4-91 (103)
205 TIGR01763 MalateDH_bact malate 96.8 0.0046 9.9E-08 65.6 9.1 116 163-279 2-147 (305)
206 PTZ00117 malate dehydrogenase; 96.8 0.0072 1.6E-07 64.5 10.5 119 160-279 3-151 (319)
207 PRK14982 acyl-ACP reductase; P 96.8 0.0019 4E-08 69.8 6.1 97 159-261 152-253 (340)
208 COG0373 HemA Glutamyl-tRNA red 96.8 0.0019 4.1E-08 71.3 6.1 81 159-242 175-259 (414)
209 cd01076 NAD_bind_1_Glu_DH NAD( 96.8 0.018 3.9E-07 58.8 12.5 107 159-274 28-154 (227)
210 PRK12549 shikimate 5-dehydroge 96.8 0.0017 3.7E-08 68.2 5.2 70 160-229 125-203 (284)
211 PRK13301 putative L-aspartate 96.7 0.0035 7.6E-08 65.4 7.2 103 163-271 3-113 (267)
212 PRK06823 ornithine cyclodeamin 96.7 0.0039 8.5E-08 66.5 7.6 88 162-255 128-223 (315)
213 cd00650 LDH_MDH_like NAD-depen 96.7 0.0051 1.1E-07 63.5 8.0 116 165-280 1-148 (263)
214 PRK08291 ectoine utilization p 96.6 0.0035 7.5E-08 67.1 6.2 88 161-254 131-227 (330)
215 PF13380 CoA_binding_2: CoA bi 96.6 0.0096 2.1E-07 54.5 8.1 100 163-274 1-104 (116)
216 PRK00048 dihydrodipicolinate r 96.6 0.011 2.4E-07 61.2 9.5 65 163-227 2-69 (257)
217 TIGR01921 DAP-DH diaminopimela 96.6 0.0046 1E-07 66.3 6.8 86 163-254 4-91 (324)
218 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.044 9.6E-07 55.6 13.5 107 159-273 20-144 (217)
219 cd05313 NAD_bind_2_Glu_DH NAD( 96.5 0.021 4.6E-07 59.4 11.1 155 159-326 35-221 (254)
220 PRK06407 ornithine cyclodeamin 96.5 0.0065 1.4E-07 64.5 7.4 88 162-255 117-213 (301)
221 COG1748 LYS9 Saccharopine dehy 96.5 0.0049 1.1E-07 67.6 6.5 67 163-229 2-79 (389)
222 PRK06199 ornithine cyclodeamin 96.5 0.0059 1.3E-07 66.8 7.0 93 162-257 155-262 (379)
223 PF01408 GFO_IDH_MocA: Oxidore 96.4 0.0029 6.2E-08 56.6 3.5 106 164-273 2-114 (120)
224 KOG2653 6-phosphogluconate deh 96.4 0.03 6.6E-07 60.5 11.6 156 163-330 7-171 (487)
225 cd05291 HicDH_like L-2-hydroxy 96.4 0.012 2.6E-07 62.2 8.7 91 163-254 1-117 (306)
226 PRK13303 L-aspartate dehydroge 96.4 0.011 2.4E-07 61.5 8.0 106 163-273 2-114 (265)
227 PRK08269 3-hydroxybutyryl-CoA 96.4 0.017 3.6E-07 61.7 9.6 107 173-282 1-140 (314)
228 PRK07589 ornithine cyclodeamin 96.3 0.0065 1.4E-07 65.8 6.4 90 162-255 129-226 (346)
229 TIGR01470 cysG_Nterm siroheme 96.3 0.0061 1.3E-07 61.2 5.7 91 158-253 5-99 (205)
230 COG1712 Predicted dinucleotide 96.3 0.0058 1.2E-07 62.4 5.4 96 163-263 1-100 (255)
231 COG2423 Predicted ornithine cy 96.3 0.0086 1.9E-07 64.5 7.1 88 162-255 130-226 (330)
232 TIGR02356 adenyl_thiF thiazole 96.3 0.0083 1.8E-07 59.9 6.6 88 157-245 16-137 (202)
233 PF01113 DapB_N: Dihydrodipico 96.3 0.022 4.7E-07 52.6 8.6 103 163-270 1-114 (124)
234 PF01118 Semialdhyde_dh: Semia 96.3 0.0097 2.1E-07 54.3 6.2 87 164-255 1-98 (121)
235 PRK14030 glutamate dehydrogena 96.3 0.052 1.1E-06 60.7 13.0 160 159-331 225-416 (445)
236 PRK12475 thiamine/molybdopteri 96.2 0.008 1.7E-07 64.8 6.5 85 157-242 19-139 (338)
237 PLN02477 glutamate dehydrogena 96.2 0.044 9.5E-07 60.7 12.2 148 159-326 203-378 (410)
238 PRK06223 malate dehydrogenase; 96.2 0.019 4.1E-07 60.4 9.0 103 163-266 3-131 (307)
239 PRK00683 murD UDP-N-acetylmura 96.2 0.012 2.5E-07 64.8 7.5 109 162-270 3-126 (418)
240 TIGR01809 Shik-DH-AROM shikima 96.2 0.0067 1.5E-07 63.6 5.4 70 160-229 123-201 (282)
241 PF03720 UDPG_MGDP_dh_C: UDP-g 96.2 0.0066 1.4E-07 54.5 4.6 79 173-253 18-100 (106)
242 PRK00066 ldh L-lactate dehydro 96.1 0.022 4.7E-07 60.8 9.0 94 161-255 5-123 (315)
243 PF02558 ApbA: Ketopantoate re 96.1 0.0048 1E-07 57.6 3.6 110 165-278 1-124 (151)
244 PTZ00082 L-lactate dehydrogena 96.1 0.037 8.1E-07 59.2 10.8 107 160-267 4-141 (321)
245 COG1004 Ugd Predicted UDP-gluc 96.1 0.02 4.3E-07 62.8 8.5 110 163-272 1-138 (414)
246 COG0026 PurK Phosphoribosylami 96.0 0.013 2.7E-07 63.7 6.5 63 162-224 1-68 (375)
247 COG1064 AdhP Zn-dependent alco 96.0 0.0092 2E-07 64.4 5.4 39 161-199 166-204 (339)
248 PRK09414 glutamate dehydrogena 96.0 0.073 1.6E-06 59.6 12.5 109 158-274 228-362 (445)
249 PRK01710 murD UDP-N-acetylmura 96.0 0.035 7.6E-07 61.8 10.1 111 160-271 12-142 (458)
250 PF00185 OTCace: Aspartate/orn 95.9 0.031 6.8E-07 53.9 8.3 94 161-254 1-120 (158)
251 cd00757 ThiF_MoeB_HesA_family 95.8 0.016 3.5E-07 58.7 6.1 93 158-254 17-143 (228)
252 cd01339 LDH-like_MDH L-lactate 95.8 0.021 4.5E-07 60.2 7.0 91 165-256 1-117 (300)
253 PRK08306 dipicolinate synthase 95.8 0.063 1.4E-06 56.8 10.6 106 161-274 1-116 (296)
254 TIGR02964 xanthine_xdhC xanthi 95.8 0.055 1.2E-06 55.9 9.8 89 163-274 101-189 (246)
255 PRK06719 precorrin-2 dehydroge 95.8 0.023 5E-07 54.7 6.6 38 158-195 9-46 (157)
256 PRK12548 shikimate 5-dehydroge 95.8 0.022 4.9E-07 59.9 7.0 36 160-195 124-160 (289)
257 TIGR01850 argC N-acetyl-gamma- 95.8 0.038 8.1E-07 59.8 8.9 99 163-267 1-112 (346)
258 cd05292 LDH_2 A subgroup of L- 95.6 0.044 9.5E-07 58.2 8.5 91 163-254 1-116 (308)
259 PRK14031 glutamate dehydrogena 95.6 0.1 2.2E-06 58.4 11.6 157 159-327 225-411 (444)
260 cd05297 GH4_alpha_glucosidase_ 95.5 0.025 5.4E-07 62.7 6.6 66 163-228 1-84 (423)
261 PRK06718 precorrin-2 dehydroge 95.5 0.28 6.2E-06 49.1 13.3 72 158-229 6-81 (202)
262 cd05293 LDH_1 A subgroup of L- 95.5 0.061 1.3E-06 57.4 9.1 92 163-255 4-121 (312)
263 COG0569 TrkA K+ transport syst 95.5 0.012 2.6E-07 59.8 3.6 69 163-231 1-79 (225)
264 PLN02968 Probable N-acetyl-gam 95.5 0.024 5.3E-07 62.2 6.2 102 160-267 36-147 (381)
265 PF00056 Ldh_1_N: lactate/mala 95.4 0.027 5.8E-07 53.2 5.5 94 163-256 1-120 (141)
266 PRK05690 molybdopterin biosynt 95.4 0.025 5.3E-07 58.3 5.6 93 157-253 27-153 (245)
267 TIGR00658 orni_carb_tr ornithi 95.3 0.32 6.9E-06 51.9 14.0 66 160-225 146-223 (304)
268 PRK09496 trkA potassium transp 95.3 0.021 4.6E-07 62.7 5.2 69 163-231 1-78 (453)
269 PRK00779 ornithine carbamoyltr 95.3 0.26 5.5E-06 52.6 13.1 66 160-225 150-224 (304)
270 TIGR02355 moeB molybdopterin s 95.3 0.032 7E-07 57.4 6.0 39 157-195 19-58 (240)
271 PRK04207 glyceraldehyde-3-phos 95.2 0.044 9.6E-07 59.2 7.1 66 164-229 3-89 (341)
272 cd01486 Apg7 Apg7 is an E1-lik 95.2 0.062 1.4E-06 57.3 8.0 88 164-255 1-141 (307)
273 COG0771 MurD UDP-N-acetylmuram 95.2 0.2 4.3E-06 56.3 12.3 184 160-345 5-227 (448)
274 PRK08644 thiamine biosynthesis 95.2 0.054 1.2E-06 54.7 7.1 38 157-194 23-61 (212)
275 TIGR03026 NDP-sugDHase nucleot 95.1 0.085 1.8E-06 58.0 9.1 89 159-253 310-409 (411)
276 PF13478 XdhC_C: XdhC Rossmann 95.0 0.045 9.7E-07 51.7 5.7 86 165-278 1-86 (136)
277 PRK01390 murD UDP-N-acetylmura 95.0 0.096 2.1E-06 58.2 9.2 112 159-270 6-138 (460)
278 PRK00856 pyrB aspartate carbam 95.0 0.13 2.8E-06 54.9 9.8 65 160-226 154-221 (305)
279 KOG0023 Alcohol dehydrogenase, 95.0 0.028 6.1E-07 60.2 4.5 37 161-197 181-217 (360)
280 PLN02353 probable UDP-glucose 94.9 0.11 2.4E-06 58.7 9.4 103 159-265 321-456 (473)
281 PF00208 ELFV_dehydrog: Glutam 94.9 0.032 7E-07 57.6 4.8 108 159-274 29-165 (244)
282 PF13460 NAD_binding_10: NADH( 94.9 0.087 1.9E-06 50.2 7.4 65 165-231 1-73 (183)
283 TIGR00670 asp_carb_tr aspartat 94.9 0.18 3.8E-06 53.8 10.4 66 160-225 148-223 (301)
284 PRK01713 ornithine carbamoyltr 94.9 0.48 1E-05 51.3 13.7 95 160-254 154-275 (334)
285 PRK06019 phosphoribosylaminoim 94.9 0.056 1.2E-06 58.7 6.7 63 162-224 2-69 (372)
286 PRK03369 murD UDP-N-acetylmura 94.9 0.035 7.5E-07 62.6 5.3 111 160-270 10-141 (488)
287 PRK07688 thiamine/molybdopteri 94.8 0.052 1.1E-06 58.7 6.2 39 157-195 19-58 (339)
288 COG0169 AroE Shikimate 5-dehyd 94.8 0.035 7.7E-07 58.6 4.7 91 160-254 124-226 (283)
289 PRK12749 quinate/shikimate deh 94.8 0.14 2.9E-06 54.2 9.1 36 160-195 122-158 (288)
290 PRK13814 pyrB aspartate carbam 94.7 0.13 2.8E-06 55.1 9.0 65 160-224 155-223 (310)
291 COG1004 Ugd Predicted UDP-gluc 94.7 0.087 1.9E-06 57.9 7.7 89 160-252 308-406 (414)
292 PRK08223 hypothetical protein; 94.7 0.069 1.5E-06 56.6 6.7 39 156-194 21-60 (287)
293 COG5322 Predicted dehydrogenas 94.7 0.053 1.1E-06 56.9 5.6 100 158-262 163-269 (351)
294 PF02254 TrkA_N: TrkA-N domain 94.7 0.023 5E-07 50.6 2.7 86 165-252 1-94 (116)
295 PRK00436 argC N-acetyl-gamma-g 94.7 0.091 2E-06 56.7 7.7 97 163-265 3-110 (343)
296 PRK02255 putrescine carbamoylt 94.5 0.16 3.4E-06 55.1 9.1 65 160-224 152-228 (338)
297 TIGR03316 ygeW probable carbam 94.5 0.47 1E-05 51.8 12.7 68 159-226 167-253 (357)
298 PF03435 Saccharop_dh: Sacchar 94.5 0.024 5.2E-07 61.4 2.9 84 165-254 1-98 (386)
299 PRK02102 ornithine carbamoyltr 94.5 0.4 8.7E-06 51.8 12.0 66 160-225 153-231 (331)
300 PRK11064 wecC UDP-N-acetyl-D-m 94.5 0.17 3.6E-06 56.1 9.3 71 158-229 316-397 (415)
301 PRK05086 malate dehydrogenase; 94.5 0.13 2.9E-06 54.8 8.3 95 163-257 1-121 (312)
302 cd05312 NAD_bind_1_malic_enz N 94.4 0.25 5.5E-06 52.2 10.0 164 159-329 22-224 (279)
303 PLN02602 lactate dehydrogenase 94.4 0.17 3.7E-06 55.0 9.1 92 163-255 38-155 (350)
304 PRK14106 murD UDP-N-acetylmura 94.3 0.22 4.7E-06 55.0 9.9 111 160-270 3-132 (450)
305 PRK08328 hypothetical protein; 94.3 0.08 1.7E-06 54.0 6.0 39 157-195 22-61 (231)
306 PLN02520 bifunctional 3-dehydr 94.3 0.049 1.1E-06 62.2 4.9 38 159-196 376-413 (529)
307 PLN02527 aspartate carbamoyltr 94.3 0.19 4.2E-06 53.6 9.1 67 160-226 149-226 (306)
308 PLN02819 lysine-ketoglutarate 94.3 0.06 1.3E-06 65.8 5.7 69 161-229 568-659 (1042)
309 cd01487 E1_ThiF_like E1_ThiF_l 94.2 0.11 2.5E-06 50.7 6.6 32 164-195 1-33 (174)
310 PTZ00079 NADP-specific glutama 94.2 0.57 1.2E-05 52.7 12.8 157 158-326 233-420 (454)
311 PRK05600 thiamine biosynthesis 94.2 0.098 2.1E-06 57.2 6.7 38 157-194 36-74 (370)
312 TIGR02717 AcCoA-syn-alpha acet 94.2 0.31 6.7E-06 54.6 10.8 107 160-274 5-123 (447)
313 PRK05708 2-dehydropantoate 2-r 94.2 0.13 2.9E-06 54.3 7.5 113 163-278 3-127 (305)
314 cd01492 Aos1_SUMO Ubiquitin ac 94.2 0.099 2.1E-06 52.1 6.2 39 157-195 16-55 (197)
315 PLN02342 ornithine carbamoyltr 94.1 0.76 1.6E-05 50.1 13.3 67 160-226 192-267 (348)
316 PRK02006 murD UDP-N-acetylmura 94.1 0.089 1.9E-06 59.2 6.4 113 160-272 5-147 (498)
317 KOG2304 3-hydroxyacyl-CoA dehy 94.1 0.03 6.5E-07 57.4 2.3 135 161-304 10-174 (298)
318 COG0334 GdhA Glutamate dehydro 94.1 0.11 2.5E-06 57.2 6.8 150 159-328 204-381 (411)
319 PRK02472 murD UDP-N-acetylmura 94.0 0.43 9.2E-06 52.6 11.4 112 160-271 3-133 (447)
320 cd00300 LDH_like L-lactate deh 94.0 0.17 3.7E-06 53.5 8.0 90 165-255 1-116 (300)
321 PRK05597 molybdopterin biosynt 94.0 0.087 1.9E-06 57.2 5.9 39 157-195 23-62 (355)
322 PRK06349 homoserine dehydrogen 94.0 0.26 5.6E-06 54.8 9.7 107 163-273 4-124 (426)
323 PRK09496 trkA potassium transp 94.0 0.11 2.4E-06 57.0 6.8 92 160-253 229-330 (453)
324 cd05290 LDH_3 A subgroup of L- 94.0 0.22 4.8E-06 53.1 8.8 91 164-254 1-119 (307)
325 PRK04284 ornithine carbamoyltr 94.0 0.77 1.7E-05 49.7 12.9 66 160-225 153-231 (332)
326 TIGR01772 MDH_euk_gproteo mala 94.0 0.23 5E-06 53.2 8.8 93 164-256 1-118 (312)
327 PRK09880 L-idonate 5-dehydroge 93.9 0.1 2.2E-06 55.2 6.2 90 161-255 169-267 (343)
328 cd08230 glucose_DH Glucose deh 93.9 0.093 2E-06 55.8 5.7 34 161-194 172-205 (355)
329 PRK11579 putative oxidoreducta 93.9 0.095 2.1E-06 56.1 5.8 67 163-230 5-76 (346)
330 PRK08762 molybdopterin biosynt 93.8 0.11 2.3E-06 56.8 6.1 37 158-194 131-168 (376)
331 PRK00421 murC UDP-N-acetylmura 93.8 0.087 1.9E-06 58.7 5.5 113 160-272 5-133 (461)
332 PRK06270 homoserine dehydrogen 93.8 0.29 6.4E-06 52.8 9.3 111 163-273 3-145 (341)
333 PRK00141 murD UDP-N-acetylmura 93.7 0.089 1.9E-06 59.0 5.4 113 159-271 12-146 (473)
334 PLN00106 malate dehydrogenase 93.7 0.27 5.9E-06 52.9 8.9 97 161-257 17-138 (323)
335 PRK07411 hypothetical protein; 93.7 0.11 2.5E-06 57.1 6.0 39 157-195 33-72 (390)
336 TIGR00036 dapB dihydrodipicoli 93.6 0.37 8E-06 50.3 9.4 65 163-227 2-77 (266)
337 PRK03515 ornithine carbamoyltr 93.6 0.63 1.4E-05 50.4 11.4 66 160-225 154-232 (336)
338 TIGR01381 E1_like_apg7 E1-like 93.6 0.3 6.5E-06 57.0 9.3 128 106-254 298-480 (664)
339 PF02629 CoA_binding: CoA bind 93.6 0.28 6E-06 43.2 7.2 67 162-229 3-73 (96)
340 PRK14027 quinate/shikimate deh 93.5 0.061 1.3E-06 56.7 3.5 70 160-229 125-205 (283)
341 cd01337 MDH_glyoxysomal_mitoch 93.5 0.37 7.9E-06 51.6 9.3 94 163-256 1-119 (310)
342 COG1648 CysG Siroheme synthase 93.4 0.079 1.7E-06 53.7 4.0 90 158-253 8-102 (210)
343 cd01338 MDH_choloroplast_like 93.4 0.66 1.4E-05 49.9 11.1 99 163-263 3-135 (322)
344 PLN02948 phosphoribosylaminoim 93.4 0.2 4.4E-06 57.8 7.7 73 157-229 17-94 (577)
345 PRK07806 short chain dehydroge 93.4 0.22 4.8E-06 49.6 7.1 36 160-195 4-40 (248)
346 PRK05786 fabG 3-ketoacyl-(acyl 93.4 0.17 3.6E-06 50.0 6.1 37 160-196 3-40 (238)
347 COG1893 ApbA Ketopantoate redu 93.3 0.85 1.9E-05 48.7 11.8 141 163-307 1-154 (307)
348 PRK10669 putative cation:proto 93.3 0.095 2.1E-06 59.9 4.9 88 163-252 418-513 (558)
349 TIGR02853 spore_dpaA dipicolin 93.3 0.61 1.3E-05 49.3 10.6 105 162-274 1-115 (287)
350 PRK07878 molybdopterin biosynt 93.3 0.14 3.1E-06 56.2 6.1 39 157-195 37-76 (392)
351 COG0673 MviM Predicted dehydro 93.3 0.11 2.5E-06 54.5 5.1 68 163-230 4-79 (342)
352 PRK10637 cysG siroheme synthas 93.2 0.15 3.2E-06 57.2 6.1 93 157-254 7-103 (457)
353 PRK05562 precorrin-2 dehydroge 93.2 2.4 5.3E-05 43.5 14.3 39 158-196 21-59 (223)
354 PTZ00325 malate dehydrogenase; 93.2 0.4 8.6E-06 51.6 9.0 97 160-256 6-127 (321)
355 PRK12562 ornithine carbamoyltr 93.2 1.2 2.7E-05 48.2 12.7 67 160-226 154-233 (334)
356 PRK11891 aspartate carbamoyltr 93.1 0.34 7.4E-06 54.1 8.7 67 160-226 239-316 (429)
357 PLN03209 translocon at the inn 93.1 0.19 4.2E-06 57.9 6.9 70 160-229 78-170 (576)
358 PRK07232 bifunctional malic en 93.1 1.5 3.2E-05 52.3 14.3 182 102-325 151-351 (752)
359 PRK04690 murD UDP-N-acetylmura 93.0 0.17 3.6E-06 56.8 6.2 111 160-270 6-139 (468)
360 TIGR03366 HpnZ_proposed putati 93.0 0.14 3.1E-06 52.7 5.2 36 161-196 120-156 (280)
361 PRK03803 murD UDP-N-acetylmura 93.0 0.18 3.8E-06 55.9 6.2 110 161-270 5-132 (448)
362 TIGR01161 purK phosphoribosyla 93.0 0.15 3.3E-06 54.6 5.6 62 164-225 1-67 (352)
363 PRK03659 glutathione-regulated 93.0 0.13 2.8E-06 59.7 5.3 92 162-255 400-499 (601)
364 cd05188 MDR Medium chain reduc 92.9 0.24 5.1E-06 49.1 6.5 35 161-195 134-168 (271)
365 cd05294 LDH-like_MDH_nadp A la 92.9 0.4 8.7E-06 51.1 8.5 91 163-254 1-121 (309)
366 cd01485 E1-1_like Ubiquitin ac 92.8 0.27 5.9E-06 49.0 6.6 39 157-195 14-53 (198)
367 TIGR01771 L-LDH-NAD L-lactate 92.7 0.33 7.3E-06 51.5 7.5 89 167-255 1-114 (299)
368 cd01483 E1_enzyme_family Super 92.6 0.71 1.5E-05 43.0 8.9 32 164-195 1-33 (143)
369 PLN02214 cinnamoyl-CoA reducta 92.6 0.37 7.9E-06 51.4 7.8 70 159-228 7-91 (342)
370 PRK06398 aldose dehydrogenase; 92.6 0.42 9.2E-06 48.4 8.0 38 159-196 3-41 (258)
371 PF03447 NAD_binding_3: Homose 92.6 0.13 2.8E-06 46.4 3.7 86 169-259 1-95 (117)
372 cd01336 MDH_cytoplasmic_cytoso 92.5 0.67 1.4E-05 49.8 9.6 91 164-254 4-128 (325)
373 PRK10206 putative oxidoreducta 92.5 0.16 3.5E-06 54.7 4.9 67 164-230 3-76 (344)
374 cd00257 Fascin Fascin-like dom 92.5 0.46 9.9E-06 42.9 7.2 75 507-592 44-119 (119)
375 TIGR01087 murD UDP-N-acetylmur 92.4 0.86 1.9E-05 50.2 10.6 108 164-272 1-128 (433)
376 COG0281 SfcA Malic enzyme [Ene 92.4 4.2 9.1E-05 45.4 15.5 185 102-326 165-369 (432)
377 PRK06392 homoserine dehydrogen 92.3 0.61 1.3E-05 50.3 9.1 109 164-273 2-136 (326)
378 PRK03562 glutathione-regulated 92.3 0.15 3.2E-06 59.4 4.7 91 162-254 400-498 (621)
379 cd01491 Ube1_repeat1 Ubiquitin 92.3 0.43 9.2E-06 50.7 7.7 39 157-195 14-53 (286)
380 cd00704 MDH Malate dehydrogena 92.3 0.91 2E-05 48.8 10.3 98 164-263 2-133 (323)
381 TIGR01202 bchC 2-desacetyl-2-h 92.3 0.23 4.9E-06 52.1 5.7 87 161-254 144-231 (308)
382 TIGR01759 MalateDH-SF1 malate 92.2 0.75 1.6E-05 49.5 9.6 92 163-254 4-129 (323)
383 PRK07877 hypothetical protein; 92.2 0.2 4.4E-06 59.3 5.7 85 157-243 102-220 (722)
384 CHL00194 ycf39 Ycf39; Provisio 92.2 0.25 5.4E-06 51.9 5.9 65 163-227 1-73 (317)
385 PRK15076 alpha-galactosidase; 92.1 0.24 5.3E-06 55.2 5.9 103 163-265 2-158 (431)
386 TIGR01758 MDH_euk_cyt malate d 92.0 0.51 1.1E-05 50.8 8.1 98 164-263 1-132 (324)
387 PLN02695 GDP-D-mannose-3',5'-e 92.0 0.3 6.5E-06 52.8 6.4 67 161-227 20-94 (370)
388 cd01489 Uba2_SUMO Ubiquitin ac 92.0 0.55 1.2E-05 50.4 8.3 88 164-255 1-123 (312)
389 COG2344 AT-rich DNA-binding pr 92.0 0.16 3.5E-06 50.8 3.8 67 164-230 86-158 (211)
390 PRK08324 short chain dehydroge 91.9 0.14 3.1E-06 60.0 4.0 39 158-196 418-457 (681)
391 KOG2711 Glycerol-3-phosphate d 91.9 0.65 1.4E-05 50.3 8.5 94 161-256 20-141 (372)
392 PRK01368 murD UDP-N-acetylmura 91.9 0.34 7.4E-06 54.2 6.8 108 161-270 5-128 (454)
393 PRK05442 malate dehydrogenase; 91.8 0.75 1.6E-05 49.6 9.1 99 163-263 5-137 (326)
394 PRK03806 murD UDP-N-acetylmura 91.8 0.36 7.8E-06 53.3 6.8 110 160-270 4-129 (438)
395 PRK04308 murD UDP-N-acetylmura 91.7 0.34 7.3E-06 53.7 6.5 111 160-270 3-134 (445)
396 PRK08192 aspartate carbamoyltr 91.7 0.68 1.5E-05 50.2 8.6 67 159-225 156-233 (338)
397 TIGR02822 adh_fam_2 zinc-bindi 91.7 0.29 6.2E-06 51.9 5.6 90 161-255 165-255 (329)
398 PRK06128 oxidoreductase; Provi 91.6 0.39 8.4E-06 50.0 6.5 37 158-194 51-88 (300)
399 PRK14851 hypothetical protein; 91.6 0.28 6.1E-06 57.8 6.0 38 157-194 38-76 (679)
400 PRK01438 murD UDP-N-acetylmura 91.6 0.32 7E-06 54.3 6.2 111 159-270 13-146 (480)
401 PLN02662 cinnamyl-alcohol dehy 91.5 0.42 9.1E-06 49.6 6.5 67 161-227 3-85 (322)
402 TIGR03649 ergot_EASG ergot alk 91.4 0.68 1.5E-05 47.5 8.0 65 165-229 2-78 (285)
403 cd00762 NAD_bind_malic_enz NAD 91.4 2.1 4.6E-05 44.8 11.5 159 159-326 22-222 (254)
404 cd05283 CAD1 Cinnamyl alcohol 91.3 0.39 8.5E-06 50.5 6.2 36 161-196 169-204 (337)
405 PLN02586 probable cinnamyl alc 91.2 0.73 1.6E-05 49.5 8.3 35 161-195 183-217 (360)
406 cd08239 THR_DH_like L-threonin 91.2 0.32 7E-06 51.0 5.4 36 161-196 163-199 (339)
407 PRK12862 malic enzyme; Reviewe 91.1 2.3 5.1E-05 50.9 13.0 181 103-326 160-360 (763)
408 TIGR03215 ac_ald_DH_ac acetald 91.0 0.51 1.1E-05 50.0 6.7 87 163-254 2-95 (285)
409 PRK08300 acetaldehyde dehydrog 91.0 0.43 9.4E-06 51.0 6.1 157 162-325 4-183 (302)
410 PRK08265 short chain dehydroge 90.9 0.44 9.5E-06 48.3 5.9 38 159-196 3-41 (261)
411 PLN00112 malate dehydrogenase 90.9 1.5 3.3E-05 49.3 10.5 101 163-265 101-235 (444)
412 TIGR01532 E4PD_g-proteo D-eryt 90.8 0.4 8.7E-06 51.7 5.8 30 164-193 1-34 (325)
413 PRK15057 UDP-glucose 6-dehydro 90.7 0.78 1.7E-05 50.5 8.0 65 160-227 294-368 (388)
414 TIGR03466 HpnA hopanoid-associ 90.7 0.38 8.3E-06 49.7 5.4 65 163-227 1-73 (328)
415 PRK05678 succinyl-CoA syntheta 90.7 1.8 4E-05 46.0 10.5 107 162-274 8-118 (291)
416 PRK11863 N-acetyl-gamma-glutam 90.7 0.82 1.8E-05 49.2 7.9 77 163-255 3-82 (313)
417 PF04016 DUF364: Domain of unk 90.7 0.7 1.5E-05 44.2 6.7 85 160-255 9-96 (147)
418 PRK14874 aspartate-semialdehyd 90.7 0.76 1.6E-05 49.5 7.7 89 162-255 1-95 (334)
419 PLN02206 UDP-glucuronate decar 90.7 0.83 1.8E-05 51.0 8.3 68 159-226 116-191 (442)
420 PF00899 ThiF: ThiF family; I 90.6 0.26 5.7E-06 45.6 3.7 35 161-195 1-36 (135)
421 KOG4230 C1-tetrahydrofolate sy 90.5 0.63 1.4E-05 53.3 7.0 133 159-326 159-292 (935)
422 PRK08040 putative semialdehyde 90.4 0.81 1.8E-05 49.6 7.7 89 161-255 3-98 (336)
423 PRK06701 short chain dehydroge 90.4 0.62 1.3E-05 48.5 6.5 38 158-195 42-80 (290)
424 PLN02383 aspartate semialdehyd 90.2 1 2.2E-05 48.9 8.2 89 161-254 6-100 (344)
425 PF05222 AlaDh_PNT_N: Alanine 90.1 1.9 4.1E-05 40.8 9.0 98 175-282 17-118 (136)
426 PF00070 Pyr_redox: Pyridine n 90.1 0.52 1.1E-05 39.6 4.7 35 164-198 1-35 (80)
427 PRK04148 hypothetical protein; 90.1 0.35 7.5E-06 45.9 3.9 68 161-229 16-88 (134)
428 TIGR03201 dearomat_had 6-hydro 90.0 0.44 9.6E-06 50.6 5.2 36 161-196 166-201 (349)
429 PRK12550 shikimate 5-dehydroge 89.9 0.26 5.7E-06 51.7 3.3 65 162-229 122-189 (272)
430 TIGR01296 asd_B aspartate-semi 89.9 0.74 1.6E-05 49.8 6.9 87 164-255 1-93 (339)
431 PRK12742 oxidoreductase; Provi 89.9 1.1 2.3E-05 44.2 7.5 35 159-193 3-38 (237)
432 PRK04663 murD UDP-N-acetylmura 89.8 1.8 3.9E-05 48.0 10.0 111 159-270 3-132 (438)
433 COG0039 Mdh Malate/lactate deh 89.8 1.4 3.1E-05 47.3 8.8 92 163-254 1-118 (313)
434 cd08234 threonine_DH_like L-th 89.8 0.42 9E-06 49.7 4.7 92 161-257 159-260 (334)
435 COG4007 Predicted dehydrogenas 89.7 3.9 8.5E-05 43.1 11.5 91 174-268 33-128 (340)
436 PLN02896 cinnamyl-alcohol dehy 89.7 0.58 1.3E-05 49.8 5.9 71 158-228 6-89 (353)
437 PRK12861 malic enzyme; Reviewe 89.7 1.3 2.7E-05 53.0 9.1 181 104-326 157-356 (764)
438 COG0540 PyrB Aspartate carbamo 89.7 1 2.2E-05 48.3 7.5 66 159-224 155-230 (316)
439 PRK13376 pyrB bifunctional asp 89.7 1.1 2.4E-05 51.4 8.2 62 160-221 172-244 (525)
440 PRK07523 gluconate 5-dehydroge 89.7 0.59 1.3E-05 46.9 5.6 37 159-195 7-44 (255)
441 PRK15182 Vi polysaccharide bio 89.7 1.1 2.4E-05 49.9 8.2 94 159-258 311-416 (425)
442 PLN02178 cinnamyl-alcohol dehy 89.6 0.82 1.8E-05 49.6 7.0 35 161-195 178-212 (375)
443 TIGR01472 gmd GDP-mannose 4,6- 89.6 1.1 2.3E-05 47.5 7.7 33 163-195 1-34 (343)
444 cd01490 Ube1_repeat2 Ubiquitin 89.6 0.72 1.6E-05 51.7 6.5 87 164-253 1-105 (435)
445 PRK08664 aspartate-semialdehyd 89.5 1.1 2.5E-05 48.4 8.0 85 163-254 4-107 (349)
446 TIGR01142 purT phosphoribosylg 89.5 0.81 1.8E-05 49.3 6.8 62 164-225 1-69 (380)
447 PLN02657 3,8-divinyl protochlo 89.5 0.57 1.2E-05 51.3 5.7 38 159-196 57-95 (390)
448 COG1063 Tdh Threonine dehydrog 89.5 0.6 1.3E-05 50.4 5.8 89 162-255 169-270 (350)
449 PRK07231 fabG 3-ketoacyl-(acyl 89.4 0.71 1.5E-05 45.7 5.9 37 160-196 3-40 (251)
450 TIGR01851 argC_other N-acetyl- 89.3 1.3 2.8E-05 47.6 8.0 77 164-255 3-81 (310)
451 cd08245 CAD Cinnamyl alcohol d 89.3 0.53 1.1E-05 49.0 5.0 90 161-255 162-257 (330)
452 PRK15181 Vi polysaccharide bio 89.2 0.65 1.4E-05 49.5 5.8 37 159-195 12-49 (348)
453 PRK12937 short chain dehydroge 89.2 1.5 3.2E-05 43.4 7.9 35 160-194 3-38 (245)
454 PLN00141 Tic62-NAD(P)-related 89.1 0.65 1.4E-05 47.0 5.4 70 159-228 14-95 (251)
455 PRK08217 fabG 3-ketoacyl-(acyl 89.1 0.48 1E-05 46.9 4.3 36 160-195 3-39 (253)
456 cd08255 2-desacetyl-2-hydroxye 89.0 0.66 1.4E-05 47.0 5.4 91 161-256 97-192 (277)
457 PLN02427 UDP-apiose/xylose syn 88.8 0.68 1.5E-05 50.0 5.6 69 158-226 10-94 (386)
458 PF05368 NmrA: NmrA-like famil 88.8 0.28 6.2E-06 48.8 2.5 77 165-241 1-92 (233)
459 PRK12859 3-ketoacyl-(acyl-carr 88.7 1.1 2.4E-05 45.3 6.8 37 158-194 2-41 (256)
460 cd08237 ribitol-5-phosphate_DH 88.7 1.2 2.5E-05 47.5 7.2 88 161-254 163-256 (341)
461 TIGR01777 yfcH conserved hypot 88.7 1 2.2E-05 45.7 6.5 63 166-228 2-67 (292)
462 PF04321 RmlD_sub_bind: RmlD s 88.7 0.55 1.2E-05 49.1 4.7 59 163-229 1-62 (286)
463 PRK06728 aspartate-semialdehyd 88.6 1.6 3.4E-05 47.6 8.2 88 161-254 4-99 (347)
464 TIGR02825 B4_12hDH leukotriene 88.6 0.65 1.4E-05 48.5 5.1 36 161-196 138-174 (325)
465 COG1090 Predicted nucleoside-d 88.5 0.72 1.6E-05 48.8 5.2 59 169-227 6-65 (297)
466 PRK07856 short chain dehydroge 88.4 0.68 1.5E-05 46.4 5.0 37 159-195 3-40 (252)
467 PRK06500 short chain dehydroge 88.3 0.85 1.8E-05 45.2 5.5 37 159-195 3-40 (249)
468 PRK14852 hypothetical protein; 88.3 0.76 1.6E-05 56.0 6.0 38 157-194 327-365 (989)
469 KOG0022 Alcohol dehydrogenase, 88.1 0.37 8.1E-06 51.8 3.0 53 161-213 192-245 (375)
470 TIGR02622 CDP_4_6_dhtase CDP-g 88.1 0.84 1.8E-05 48.5 5.7 37 160-196 2-39 (349)
471 COG2910 Putative NADH-flavin r 88.1 0.92 2E-05 45.6 5.5 67 163-229 1-73 (211)
472 PLN02989 cinnamyl-alcohol dehy 88.1 1.1 2.4E-05 46.8 6.5 67 161-227 4-86 (325)
473 PRK03815 murD UDP-N-acetylmura 88.1 3.2 7E-05 45.9 10.4 104 163-270 1-113 (401)
474 PRK05865 hypothetical protein; 88.1 2.1 4.5E-05 51.9 9.5 95 163-257 1-105 (854)
475 PRK12826 3-ketoacyl-(acyl-carr 88.1 0.92 2E-05 44.8 5.6 37 159-195 3-40 (251)
476 cd08296 CAD_like Cinnamyl alco 88.0 0.83 1.8E-05 48.0 5.6 35 161-195 163-197 (333)
477 PRK12367 short chain dehydroge 88.0 0.92 2E-05 46.3 5.7 38 158-195 10-48 (245)
478 PRK13529 malate dehydrogenase; 88.0 6 0.00013 45.8 12.6 218 75-326 234-498 (563)
479 COG3288 PntA NAD/NADP transhyd 88.0 0.85 1.8E-05 48.9 5.5 95 159-254 161-281 (356)
480 PLN02740 Alcohol dehydrogenase 88.0 0.91 2E-05 49.0 5.9 36 161-196 198-234 (381)
481 PRK12828 short chain dehydroge 87.9 1.6 3.5E-05 42.7 7.2 38 159-196 4-42 (239)
482 PRK08374 homoserine dehydrogen 87.9 1.9 4.1E-05 46.6 8.3 105 163-272 3-141 (336)
483 PRK14804 ornithine carbamoyltr 87.8 1.2 2.7E-05 47.6 6.7 67 160-226 151-226 (311)
484 PLN02819 lysine-ketoglutarate 87.8 0.53 1.2E-05 57.8 4.4 151 160-329 201-412 (1042)
485 TIGR03451 mycoS_dep_FDH mycoth 87.8 0.9 2E-05 48.4 5.7 37 161-197 176-213 (358)
486 TIGR00978 asd_EA aspartate-sem 87.7 1.6 3.4E-05 47.2 7.5 87 163-254 1-104 (341)
487 PRK07478 short chain dehydroge 87.7 0.68 1.5E-05 46.4 4.4 38 159-196 3-41 (254)
488 cd08281 liver_ADH_like1 Zinc-d 87.7 0.89 1.9E-05 48.8 5.6 37 161-197 191-228 (371)
489 cd08233 butanediol_DH_like (2R 87.5 1.5 3.2E-05 46.4 7.1 36 161-196 172-208 (351)
490 PRK06196 oxidoreductase; Provi 87.5 0.9 2E-05 47.6 5.4 38 159-196 23-61 (315)
491 PRK12939 short chain dehydroge 87.5 0.72 1.6E-05 45.7 4.5 36 160-195 5-41 (250)
492 PLN02514 cinnamyl-alcohol dehy 87.5 1.2 2.5E-05 47.8 6.3 90 161-255 180-276 (357)
493 cd08242 MDR_like Medium chain 87.4 0.94 2E-05 46.9 5.4 36 161-196 155-190 (319)
494 TIGR01761 thiaz-red thiazoliny 87.4 0.71 1.5E-05 50.1 4.6 107 163-274 4-117 (343)
495 cd01488 Uba3_RUB Ubiquitin act 87.3 1.8 3.9E-05 46.1 7.5 92 164-256 1-130 (291)
496 PRK08862 short chain dehydroge 87.3 0.79 1.7E-05 46.0 4.7 37 160-196 3-40 (227)
497 PLN02166 dTDP-glucose 4,6-dehy 87.3 1.2 2.7E-05 49.6 6.6 67 160-226 118-192 (436)
498 PRK05671 aspartate-semialdehyd 87.3 1.9 4.1E-05 46.8 7.8 87 163-254 5-97 (336)
499 PRK02705 murD UDP-N-acetylmura 87.3 1 2.2E-05 50.0 5.8 107 164-270 2-133 (459)
500 TIGR01832 kduD 2-deoxy-D-gluco 87.2 0.96 2.1E-05 45.0 5.2 36 160-195 3-39 (248)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-64 Score=531.62 Aligned_cols=281 Identities=25% Similarity=0.351 Sum_probs=256.0
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhcc
Q 007040 54 DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT 133 (620)
Q Consensus 54 e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl 133 (620)
.+.+.++|++++ +.+++++++++++|+||||+++|+|+|+||+++++++||.|+|+|++|+.+||||+++++|+++|++
T Consensus 40 ~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~ 118 (324)
T COG0111 40 LEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118 (324)
T ss_pred HhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCc
Confidence 356889999888 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHH
Q 007040 134 HLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN 213 (620)
Q Consensus 134 ~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~ 213 (620)
+.++..+ +++.|.... ....+|+|+||||||+|+||+.+|++|++|||+|++|||+..... ....++...++|+
T Consensus 119 ~~~~~~~-~~g~W~~~~----~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~-~~~~~~~~~~~Ld 192 (324)
T COG0111 119 PDADASQ-RRGEWDRKA----FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRER-AGVDGVVGVDSLD 192 (324)
T ss_pred hhhHHHH-HcCCccccc----cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhh-hccccceecccHH
Confidence 9999875 999998621 233589999999999999999999999999999999999664432 2334566778999
Q ss_pred hhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCcccc
Q 007040 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVR 292 (620)
Q Consensus 214 eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~ 292 (620)
++|++||||++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~ 272 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLW 272 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 777889999
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC---CCccccCCCCc
Q 007040 293 EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI---PKNAISDTEGC 342 (620)
Q Consensus 293 ~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~---p~nvVn~~~~y 342 (620)
++|||++|||+|+.|.|+.+++...+++|+.+|+ +|.. +.+.|+...+|
T Consensus 273 ~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l-~g~~~~~~~~~v~~~~~~ 324 (324)
T COG0111 273 DLPNVILTPHIGGSTDEAQERVAEIVAENIVRYL-AGGPVVNNAPEVDLERGY 324 (324)
T ss_pred cCCCeEECCcccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCCccccccccCC
Confidence 9999999999999999999999999999999996 7877 45556555554
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=3.9e-63 Score=521.80 Aligned_cols=314 Identities=25% Similarity=0.309 Sum_probs=267.4
Q ss_pred CCCEEEEeCCCCCChhHHhhccCCceEEecCC-CCCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccC
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~-~~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~ 92 (620)
++++|++...+.. ...+.|+...++..++. ...+ .+.+.++|++++.. .++++++++++|+||+|++.|+|+
T Consensus 1 ~~~~vl~~~~~~~--~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 1 MKPSVILYKALPD--DLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CCceEEEeCCCCH--HHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhCCCCeEEEECceec
Confidence 3578888876532 23345555455544431 1111 24578899988754 479999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCCh
Q 007040 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (620)
Q Consensus 93 D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (620)
|+||+++|.++||.|+|+|++++++||||++++||+++|+++.+++. ++++.|....... ....+|+|+||||||+|+
T Consensus 78 d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~-~~~g~w~~~~~~~-~~g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAER-VKAGEWTASIGPD-WFGTDVHHKTLGIVGMGR 155 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHH-HHcCCCcccCccc-cccCCCCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999887 5889996432111 123589999999999999
Q ss_pred hhHHHHHHHh-hCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE
Q 007040 173 SARALATRSL-SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (620)
Q Consensus 173 IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI 251 (620)
||+.+|++|+ +|||+|++||++..... ....+.. ..+|++++++||+|++|||+|++|+||||++.|++||||++||
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~~~~-~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEA-EERFNAR-YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhh-HHhcCcE-ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 9999999998 99999999998753322 1122333 4599999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 252 NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
|+|||++||++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.+++.++...+++||.+|+ .|+
T Consensus 234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~ 312 (323)
T PRK15409 234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDAL-QGK 312 (323)
T ss_pred ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999999996 6678999999999999999999999999999999999999997 888
Q ss_pred CCCccccCC
Q 007040 331 IPKNAISDT 339 (620)
Q Consensus 331 ~p~nvVn~~ 339 (620)
+|.++||++
T Consensus 313 ~~~~~vn~~ 321 (323)
T PRK15409 313 VEKNCVNPQ 321 (323)
T ss_pred CCCcccCcc
Confidence 899999864
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=5.6e-63 Score=520.25 Aligned_cols=315 Identities=30% Similarity=0.390 Sum_probs=270.0
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCC--CCc--ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCc
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG--RLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~--~l~--e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~ 94 (620)
|++++....+++. ..+.+....++..+... ..+ .+.+++++++++.....++.++++++|+||+|+..|+||||
T Consensus 2 k~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~ 79 (324)
T COG1052 2 KIVVLSTRKLPPE--VLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDN 79 (324)
T ss_pred CcEEEecCcCCHH--HHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCc
Confidence 5565555544332 33444444555555422 222 45678999999887779999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhh
Q 007040 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (620)
Q Consensus 95 VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (620)
||+++|+++||.|+|+|++++++||||+|+|||++.|++..+++. .++|.|.....+....+.+++|+|+||||+|+||
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG 158 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRR-VREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIG 158 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHH-HhcCcccccCCcccccccCCCCCEEEEECCCHHH
Confidence 999999999999999999999999999999999999999999997 6899997653122233468999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+++|+++++|||+|+|||+++. .......+..+. +|++++++||+|++|||+|++|+||||++.|++||+|++|||+|
T Consensus 159 ~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 159 QAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred HHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 9999999999999999999985 222222334455 49999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceeEeecCCCCCC-CCccccCCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPN---VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 255 RG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~-~~spL~~~pN---VIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
||++||++||++||++|+|+||+|||||.+|. .++||+.++| |++|||+|++|.+++.+|...+++||.+|+ +|+
T Consensus 237 RG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~-~g~ 315 (324)
T COG1052 237 RGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFF-DGG 315 (324)
T ss_pred CccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999998555 6899998888 999999999999999999999999999997 888
Q ss_pred CCCccccCC
Q 007040 331 IPKNAISDT 339 (620)
Q Consensus 331 ~p~nvVn~~ 339 (620)
.|.+.|+++
T Consensus 316 ~~~~~v~~~ 324 (324)
T COG1052 316 VPPNEVNPE 324 (324)
T ss_pred CCCCCCCCC
Confidence 899998863
No 4
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-61 Score=508.10 Aligned_cols=300 Identities=21% Similarity=0.300 Sum_probs=253.7
Q ss_pred EEEeCCCCCChhHHhhccCCceEEecCCC--CCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHH
Q 007040 22 VVALNCIEDCVLEQDSLAGVALVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL 99 (620)
Q Consensus 22 VvvL~~~ed~~~~~~~L~~l~~v~~~~~~--~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~a 99 (620)
|++++.........+.|+...++..+... +...+.+.++|+++++ ..++++++++++|+||||++.|+|+|+||+++
T Consensus 3 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~ 81 (311)
T PRK08410 3 IVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEY 81 (311)
T ss_pred EEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHH
Confidence 55554422222334556555555544321 1123467889988876 45799999999999999999999999999999
Q ss_pred HHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCC--CCCcceeecCcEEEEEeCChhhHHH
Q 007040 100 AADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARAL 177 (620)
Q Consensus 100 a~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~v 177 (620)
|+++||.|+|+||+++.+||||+++|||+++|+++.+++. ++++.|...... ....+++|+|+||||||+|+||+.+
T Consensus 82 ~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~v 160 (311)
T PRK08410 82 AKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY-VKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRV 160 (311)
T ss_pred HHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999999887 588999743211 1112468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 178 A~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
|+++++|||+|++|||+..... .+. ...+|++++++||+|++|||+|++|+||||++.|++||||++|||+|||+
T Consensus 161 A~~~~~fgm~V~~~d~~~~~~~----~~~-~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 161 AKIAQAFGAKVVYYSTSGKNKN----EEY-ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHhhcCCEEEEECCCccccc----cCc-eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 9999999999999999753321 122 34589999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM---PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 258 vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~---pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
+||++||++||++|+|+ |+||||++ |++.++|||.+ ||||+|||+||+|.++..++...+++||.+|+ +|+
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~-~g~ 310 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFL-EGG 310 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999 99999996 67788999987 89999999999999999999999999999997 554
No 5
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=3e-61 Score=509.39 Aligned_cols=316 Identities=23% Similarity=0.273 Sum_probs=266.8
Q ss_pred CCEEEEeCCCCCChhHHhhccCCceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCC
Q 007040 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDR 93 (620)
Q Consensus 19 kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~~-~l~----e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D 93 (620)
+|+|++...++. ...+.|+...++..+... ... .+.++++|++++....++++++++++|+||||+++|+|+|
T Consensus 2 ~~kil~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d 79 (333)
T PRK13243 2 KPKVFITREIPE--NGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYD 79 (333)
T ss_pred CceEEEECCCCH--HHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccc
Confidence 577877765432 223345544445433211 111 2457889999887666899999999999999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCC---CCCCcceeecCcEEEEEeC
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVGR 170 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIGl 170 (620)
+||+++|.++||.|+|+||+++.+||||++++||+++|+++.+++. .+++.|..... +....+.+|+|++|||||+
T Consensus 80 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~ 158 (333)
T PRK13243 80 NIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGF 158 (333)
T ss_pred ccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCccccccccccccccCCCCCEEEEECc
Confidence 9999999999999999999999999999999999999999999887 58899974311 1111236899999999999
Q ss_pred ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 171 SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 171 G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
|+||+.+|++|++|||+|++||++..... ....+. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|
T Consensus 159 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~l 236 (333)
T PRK13243 159 GRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAIL 236 (333)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEE
Confidence 99999999999999999999999864322 112233 3458999999999999999999999999999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
||+|||++||++||+++|++|+|+||+||||++||++++|||++||||+|||+||+|.+++.++.+.+++||.+|+ +|+
T Consensus 237 IN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~ 315 (333)
T PRK13243 237 VNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFK-RGE 315 (333)
T ss_pred EECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999999999975545899999999999999999999999999999999999996 898
Q ss_pred CCCccccCCC
Q 007040 331 IPKNAISDTE 340 (620)
Q Consensus 331 ~p~nvVn~~~ 340 (620)
+|.|+||.+.
T Consensus 316 ~~~~~v~~~~ 325 (333)
T PRK13243 316 VPPTLVNREV 325 (333)
T ss_pred CCCcccCHHH
Confidence 8999998543
No 6
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-61 Score=505.97 Aligned_cols=272 Identities=28% Similarity=0.383 Sum_probs=243.8
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.+.++|+++++. .++++++++++|+||||+++|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|++.
T Consensus 41 ~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~ 119 (317)
T PRK06487 41 ERLRGAQVAISNK-VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLP 119 (317)
T ss_pred HHhCCCeEEEEeC-CCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHH
Confidence 5678899887764 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCC--CCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 135 LLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
.++.. ++++.|...... ......+|.|+||||||+|+||+.+|++|++|||+|++||++..... . ...+|
T Consensus 120 ~~~~~-~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~------~-~~~~l 191 (317)
T PRK06487 120 DYQQA-VAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPAR------P-DRLPL 191 (317)
T ss_pred HHHHH-HHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCccc------c-cccCH
Confidence 99887 588999753211 11223689999999999999999999999999999999998743211 1 13589
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccc
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL 291 (620)
++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 192 ~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl 271 (317)
T PRK06487 192 DELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPL 271 (317)
T ss_pred HHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 66778999
Q ss_pred cC--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 292 RE--MPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 292 ~~--~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
|+ +|||++|||+||+|.+++.++...+++||.+|+ .|+ |.++||
T Consensus 272 ~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~v~ 317 (317)
T PRK06487 272 LAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFF-AGK-PLRVVS 317 (317)
T ss_pred hhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC-CCcCCC
Confidence 95 899999999999999999999999999999997 787 556664
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-60 Score=499.03 Aligned_cols=268 Identities=25% Similarity=0.387 Sum_probs=239.6
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.++++|++++. ..++++++++++|+||||++.|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|+++
T Consensus 40 ~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~ 118 (314)
T PRK06932 40 ERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLM 118 (314)
T ss_pred HHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChH
Confidence 467889987764 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCC--CCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 135 LLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
.+++. .+++.|...... ....+.+|+|+||||||+|.||+.+|+++++|||+|++||++.... .. ....+|
T Consensus 119 ~~~~~-~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~---~~---~~~~~l 191 (314)
T PRK06932 119 GWYRD-QLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV---CR---EGYTPF 191 (314)
T ss_pred HHHHH-HHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc---cc---cccCCH
Confidence 99887 478899643211 0123368999999999999999999999999999999999764211 11 124589
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccc
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL 291 (620)
++++++||+|++|||+|++|+||||++.|++||||++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 192 ~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl 271 (314)
T PRK06932 192 EEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPL 271 (314)
T ss_pred HHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 66788999
Q ss_pred c----CCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Q 007040 292 R----EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (620)
Q Consensus 292 ~----~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~ 330 (620)
| ++|||++|||+||+|.++++++.+.+++||.+|+..|+
T Consensus 272 ~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 272 IQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred hHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8 59999999999999999999999999999999986553
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-59 Score=509.52 Aligned_cols=309 Identities=26% Similarity=0.298 Sum_probs=263.2
Q ss_pred CCCEEEEeCCCCCChhHHhhccCC-c-eEEecCCCC---CcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccC
Q 007040 18 PLPSVVALNCIEDCVLEQDSLAGV-A-LVEHVPLGR---LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (620)
Q Consensus 18 ~kPkVvvL~~~ed~~~~~~~L~~l-~-~v~~~~~~~---l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~ 92 (620)
.+.+|++++.+. ....+.|... . ++..+.... ...+.+.++|++++.+...+++++++++|+||||+++|+|+
T Consensus 9 ~~~~ili~~~~~--~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 86 (409)
T PRK11790 9 DKIKFLLLEGVH--QSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGT 86 (409)
T ss_pred CCeEEEEECCCC--HHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceec
Confidence 345777776443 2223344432 2 554442211 11245788999877776789999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCCh
Q 007040 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (620)
Q Consensus 93 D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (620)
|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++. .+++.|.... ..+.+|.|+||||||+|+
T Consensus 87 d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~-~~~g~w~~~~----~~~~~L~gktvGIiG~G~ 161 (409)
T PRK11790 87 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK-AHRGGWNKSA----AGSFEVRGKTLGIVGYGH 161 (409)
T ss_pred ccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH-HHcCcccccc----cCcccCCCCEEEEECCCH
Confidence 99999999999999999999999999999999999999999998887 5789997532 123689999999999999
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEE
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
||+.+|+++++|||+|++||++..... .++....+|++++++||+|++|||+|++|+||||++.|++||+|++|||
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~~----~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN 237 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLPL----GNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILIN 237 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCccccc----CCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 999999999999999999998753211 1234456899999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCC----CccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007040 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWM----EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (620)
Q Consensus 253 vgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~----~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~ 327 (620)
+|||++||++||+++|++|+|+||+||||++ |++. ++|||.+|||++|||+||+|.+++.++.+.+++||.+|+
T Consensus 238 ~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~- 316 (409)
T PRK11790 238 ASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYS- 316 (409)
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999987 4444 479999999999999999999999999999999999997
Q ss_pred cCCCCCccccC
Q 007040 328 DGVIPKNAISD 338 (620)
Q Consensus 328 ~G~~p~nvVn~ 338 (620)
.|+.+.+.||.
T Consensus 317 ~~~~~~~~vn~ 327 (409)
T PRK11790 317 DNGSTLSAVNF 327 (409)
T ss_pred cCCCcCcceec
Confidence 77778899985
No 9
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-59 Score=503.30 Aligned_cols=286 Identities=21% Similarity=0.287 Sum_probs=255.5
Q ss_pred cccccceEEEEecC--CCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSL--AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~--~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.+.++|++|+... .+++++.++++|+||||+++|+|+|+||+++|.++||.|+|++|+++.+||||++++||+++|+
T Consensus 93 ~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~ 172 (386)
T PLN03139 93 KHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172 (386)
T ss_pred HHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcC
Confidence 56789999887642 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
+..+++. .+++.|..... .....+|.|++|||||+|+||+.+|++|++|||+|++||++..........++...+++
T Consensus 173 ~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l 249 (386)
T PLN03139 173 FLPGYHQ-VVSGEWNVAGI--AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDL 249 (386)
T ss_pred cHHHHHH-HHhCCCccccc--cCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCH
Confidence 9998886 57899974211 12236899999999999999999999999999999999998643322223345556799
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccc
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL 291 (620)
++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++ |++.++||
T Consensus 250 ~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL 329 (386)
T PLN03139 250 DAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPW 329 (386)
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 77889999
Q ss_pred cCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC--CCCccccCCCCccC
Q 007040 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV--IPKNAISDTEGCEN 344 (620)
Q Consensus 292 ~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~--~p~nvVn~~~~y~~ 344 (620)
|.+|||++|||+||.|.+++.++...+++||.+|+ +|+ +|.++|.....|.+
T Consensus 330 ~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~-~G~~~~~~~~i~~~~~~~~ 383 (386)
T PLN03139 330 RYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYF-KGEDFPAQNYIVKEGKLAS 383 (386)
T ss_pred hcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCcceeecCCcccc
Confidence 99999999999999999999999999999999997 675 47788877777754
No 10
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=9.6e-60 Score=506.22 Aligned_cols=321 Identities=20% Similarity=0.207 Sum_probs=266.3
Q ss_pred CCCCCEEEEeCCCCCChhHHhhccCC-ceEEecCCC--CCc----cccc-ccceEEEEecCCCCCHHHHhcCCC--CeEE
Q 007040 16 PTPLPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLG--RLA----DGKI-EAAAAVLLHSLAYLPRAAQRRLRP--YQLI 85 (620)
Q Consensus 16 ~~~kPkVvvL~~~ed~~~~~~~L~~l-~~v~~~~~~--~l~----e~~l-~~AdaVlv~s~~~l~~e~l~~lp~--LK~I 85 (620)
+-++++|++.....+.. ..+.|+.. .++..+... ..+ .+.+ +++|++++.....+++++++++++ ||+|
T Consensus 12 ~~~~~~v~~~~~~~~~~-~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 12 PNGKYRVVSTKPMPGTR-WINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCCceEEEeCCCCcHH-HHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 34688999887654321 23344443 355433211 122 2344 468888887666899999999996 6999
Q ss_pred EEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEE
Q 007040 86 LCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVL 165 (620)
Q Consensus 86 ~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktV 165 (620)
++.|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|+++.+++. ++++.|...... ...+.+|.|+||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~-~~~g~w~~~~~~-~~~g~~L~gktv 168 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF-MRAGLYEGWLPH-LFVGNLLKGQTV 168 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH-HHcCCCcccccc-ccCCcCCCCCEE
Confidence 999999999999999999999999999999999999999999999999998886 577888532111 112357999999
Q ss_pred EEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCc----ccc----------CCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 166 GIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKV----TFP----------SAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 166 GIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~----~~~----------~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
||||+|+||+.+|++|+ +|||+|++||++...... .+. .......+|++++++||+|++|||+|+
T Consensus 169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~ 248 (386)
T PLN02306 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK 248 (386)
T ss_pred EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999985 999999999998642211 000 011224589999999999999999999
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
+|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++||||+|||+||+|.++
T Consensus 249 ~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~ 328 (386)
T PLN02306 249 TTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWT 328 (386)
T ss_pred hhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999998666778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 311 WMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 311 ~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
++++...+++||.+|+ +|+++.|.||..+
T Consensus 329 ~~~~~~~~~~ni~~~~-~g~~~~~~~~~~~ 357 (386)
T PLN02306 329 REGMATLAALNVLGKL-KGYPVWGDPNRVE 357 (386)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCcccccchh
Confidence 9999999999999996 8999999999554
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-59 Score=503.90 Aligned_cols=307 Identities=22% Similarity=0.286 Sum_probs=260.6
Q ss_pred eCCCCCChhHHhhccCC-ceEEecCCCC----CcccccccceEEEEec--CCCCCHHHHhcCCCCeEEEEecccCCccch
Q 007040 25 LNCIEDCVLEQDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDS 97 (620)
Q Consensus 25 L~~~ed~~~~~~~L~~l-~~v~~~~~~~----l~e~~l~~AdaVlv~s--~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~ 97 (620)
+.|.....-.+..|+.. .++....... ...+.+.++|++++.. ..++++++++++|+||||+++|+|+|+||+
T Consensus 51 ~~~~~~~~~~~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~ 130 (385)
T PRK07574 51 LGSVSGELGLRKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDL 130 (385)
T ss_pred eeeccChhhHHHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccH
Confidence 34433333333455554 3554433221 1235678999998864 257999999999999999999999999999
Q ss_pred HHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHH
Q 007040 98 ALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177 (620)
Q Consensus 98 ~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~v 177 (620)
++|.++||.|+|++++++.+||||++++||+++|++..+++. .+++.|..... ....++|.|++|||||+|+||+.|
T Consensus 131 ~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIvG~G~IG~~v 207 (385)
T PRK07574 131 QAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ-AVEGGWNIADC--VSRSYDLEGMTVGIVGAGRIGLAV 207 (385)
T ss_pred HHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHH-HHhCCCCcccc--cccceecCCCEEEEECCCHHHHHH
Confidence 999999999999999999999999999999999999998887 57899974311 112468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 178 A~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
|++|++|||+|++||++..........++....+++++++.||+|++|||+|++|++|||++.|++||+|++|||+|||+
T Consensus 208 A~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 287 (385)
T PRK07574 208 LRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGK 287 (385)
T ss_pred HHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCc
Confidence 99999999999999998633222222345556789999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 007040 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNA 335 (620)
Q Consensus 258 vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nv 335 (620)
+||++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.+++.++...+++||.+|+ +|+++.|.
T Consensus 288 iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~-~G~~~~~~ 365 (385)
T PRK07574 288 IVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFF-EGRPIRDE 365 (385)
T ss_pred hhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHH-cCCCCCCC
Confidence 99999999999999999999999996 7778999999999999999999999999999999999999997 78766554
No 12
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=3.3e-59 Score=496.41 Aligned_cols=313 Identities=22% Similarity=0.217 Sum_probs=260.7
Q ss_pred CCCCCCCEEEEeCCCCCC--hhHHhhccCCceEEecC-CCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecc
Q 007040 14 DNPTPLPSVVALNCIEDC--VLEQDSLAGVALVEHVP-LGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGS 90 (620)
Q Consensus 14 ~~~~~kPkVvvL~~~ed~--~~~~~~L~~l~~v~~~~-~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~ga 90 (620)
.+.+++|+|+++....+. ....+.++....+.... ..+...+.+.++|+++++. ..+++++++.+|+||||++.|+
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~ 91 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKM-MRLDADIIARASQMKLIMQFGV 91 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECC-CCCCHHHHhcCCCceEEEECCc
Confidence 345678889888765442 22345554443222111 1111234578899877653 4799999999999999999999
Q ss_pred cCCccchHHHHhcCcEEEEcCCC---ChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEE
Q 007040 91 SDRTVDSALAADLGLRLIHVDTS---RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGI 167 (620)
Q Consensus 91 G~D~VD~~aa~erGI~VtNtpg~---~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGI 167 (620)
|+|+||+++|.++||.|+|+|++ ++.+||||+++++|+++|++..+.+. .+++.|... ...+|.|++|||
T Consensus 92 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~-~~~~~w~~~------~~~~l~gktvGI 164 (347)
T PLN02928 92 GLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQIS-LKARRLGEP------IGDTLFGKTVFI 164 (347)
T ss_pred ccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCcccc------cccCCCCCEEEE
Confidence 99999999999999999999986 78999999999999999999988886 578889631 125799999999
Q ss_pred EeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 168 VGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 168 IGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
||+|.||+.+|++|++|||+|++|||+....... .........+|++++++||+|++|||+|++|++||
T Consensus 165 iG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li 244 (347)
T PLN02928 165 LGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIV 244 (347)
T ss_pred ECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhccc
Confidence 9999999999999999999999999974321110 00001145689999999999999999999999999
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHHHH
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIR 315 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~ 315 (620)
+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||++||||+|||+|++|.+++.++.
T Consensus 245 ~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~ 324 (347)
T PLN02928 245 NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMG 324 (347)
T ss_pred CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 66789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcc
Q 007040 316 DKAISVLQTFFFDGVIPKNA 335 (620)
Q Consensus 316 ~~a~enL~~~L~~G~~p~nv 335 (620)
+.+++||.+|+ .|+++.|+
T Consensus 325 ~~~~~nl~~~~-~g~~~~~~ 343 (347)
T PLN02928 325 KIVGDAALQLH-AGRPLTGI 343 (347)
T ss_pred HHHHHHHHHHH-CCCCCCce
Confidence 99999999996 78876654
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=5e-58 Score=510.77 Aligned_cols=279 Identities=22% Similarity=0.282 Sum_probs=254.8
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.++++|++++++.+++++++++++|+||||+++|+|+|+||+++|.++||.|+|+|++++.+||||+++|||+++|+++
T Consensus 36 ~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~ 115 (525)
T TIGR01327 36 EIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIP 115 (525)
T ss_pred HHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHH
Confidence 56789999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
.+++. .+++.|.... ....+|.|++|||||+|+||+.+|++|++|||+|++||++..... ....++...++|++
T Consensus 116 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~~~l~e 189 (525)
T TIGR01327 116 QADAS-LKEGEWDRKA----FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER-AEQLGVELVDDLDE 189 (525)
T ss_pred HHHHH-HHcCCccccc----cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEcCCHHH
Confidence 99887 5889997431 123579999999999999999999999999999999999743221 22334555568999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~ 294 (620)
++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++
T Consensus 190 ll~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 269 (525)
T TIGR01327 190 LLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDL 269 (525)
T ss_pred HHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866779999999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 295 pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
|||++|||+|++|.+++.++.+.+++|+.+|+ .|++|.|.||...
T Consensus 270 ~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 314 (525)
T TIGR01327 270 DNVIATPHLGASTREAQENVATQVAEQVLDAL-KGLPVPNAVNAPG 314 (525)
T ss_pred CCeEECCCccccHHHHHHHHHHHHHHHHHHHH-cCCCCCceeeCCC
Confidence 99999999999999999999999999999996 8888999998764
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4e-57 Score=503.63 Aligned_cols=278 Identities=24% Similarity=0.311 Sum_probs=253.0
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.+.++|++++++.+.+++++++++|+||||+++|+|+|+||+++|.++||.|+|+|++++.+||||++++||+++|+++
T Consensus 38 ~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~ 117 (526)
T PRK13581 38 EIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIP 117 (526)
T ss_pred HHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHH
Confidence 45788999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
.+++. .+++.|.... ....+|.|++|||||+|+||+.+|++|++|||+|++||++..... ....++... ++++
T Consensus 118 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~-~l~e 190 (526)
T PRK13581 118 QAHAS-LKAGKWERKK----FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER-AAQLGVELV-SLDE 190 (526)
T ss_pred HHHHH-HHcCCCCccC----ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEE-cHHH
Confidence 99886 5889997531 123579999999999999999999999999999999999753221 222344444 8999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~ 294 (620)
++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++
T Consensus 191 ll~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 270 (526)
T PRK13581 191 LLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFEL 270 (526)
T ss_pred HHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999855669999999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 295 pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
|||++|||+|++|.+++.++.+.+++||.+|+ .|++|.|+||...
T Consensus 271 ~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 315 (526)
T PRK13581 271 PNVVVTPHLGASTAEAQENVAIQVAEQVIDAL-RGGPVPNAVNLPS 315 (526)
T ss_pred CCeeEcCccccchHHHHHHHHHHHHHHHHHHH-cCCCcCceeeCCC
Confidence 99999999999999999999999999999996 8888999998754
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-56 Score=469.94 Aligned_cols=274 Identities=19% Similarity=0.255 Sum_probs=243.1
Q ss_pred cccccceEEEEecCCCCCHHHHhcCC--CCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp--~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.+.++|++++.....+++++++++| +||+|++.|+|+|+||+++|.++||.|+|+|++++++||||++++||+++|+
T Consensus 41 ~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~ 120 (330)
T PRK12480 41 DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRR 120 (330)
T ss_pred HHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHh
Confidence 56788999988876689999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (620)
++.+++. .+++.|.... + ...++|+|++|||||+|.||+++|++|++|||+|++||++...... ......++
T Consensus 121 ~~~~~~~-~~~~~~~w~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l 192 (330)
T PRK12480 121 FPDIERR-VQAHDFTWQA-E--IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSV 192 (330)
T ss_pred HHHHHHH-HHhCCccccc-c--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCH
Confidence 9998886 4666553111 1 1235799999999999999999999999999999999998743221 12234589
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC------
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW------ 286 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~------ 286 (620)
++++++||+|++|+|++++|.++|+++.|+.||+|++|||+|||.+||++||++||++|+|+||+||||++||+
T Consensus 193 ~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~ 272 (330)
T PRK12480 193 KEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDW 272 (330)
T ss_pred HHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997442
Q ss_pred ----C----CccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 287 ----M----EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 287 ----~----~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
. .+|||++|||++|||+|++|.+++.++.+.+++|+.+|+ .|+.+.+.||
T Consensus 273 ~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~ 330 (330)
T PRK12480 273 TNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVI-NTGTCETRLN 330 (330)
T ss_pred cccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-hCCCCcccCC
Confidence 1 247999999999999999999999999999999999997 6776888776
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-56 Score=458.78 Aligned_cols=309 Identities=20% Similarity=0.272 Sum_probs=269.5
Q ss_pred EEEEeCCCCCChhHHhhccCCc-eEEecCCC--CCcccccccceEEEEecCCCCCHHHHh-cCCCCeEEEEecccCCccc
Q 007040 21 SVVALNCIEDCVLEQDSLAGVA-LVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQR-RLRPYQLILCLGSSDRTVD 96 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~-~v~~~~~~--~l~e~~l~~AdaVlv~s~~~l~~e~l~-~lp~LK~I~~~gaG~D~VD 96 (620)
+|++++.++...++ .|++.. .++..... +.....++++|++++++.+++++++++ ...+||+|.+.++|+|+||
T Consensus 8 ~il~~e~~~~~~~~--~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLDQACIE--ILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccchHHHH--HHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 88888876655443 555543 44433211 122356789999999999999999999 5667999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHH
Q 007040 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176 (620)
Q Consensus 97 ~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~ 176 (620)
+.+|+++||.|.|+|.+|+.++|||++++|++|.|++++.... +++|.|.... ..+.+|+|||+||||+|+||+.
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s-~k~g~wnr~~----~~G~el~GKTLgvlG~GrIGse 160 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASAS-MKEGKWNRVK----YLGWELRGKTLGVLGLGRIGSE 160 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhee-eecCceeecc----eeeeEEeccEEEEeecccchHH
Confidence 9999999999999999999999999999999999999988775 7999998653 2347899999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 177 vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
+|++++++||+|++||+...... ....|++. .+++|+++.||+|++|||+||+|.+|||.+.|+.||+|..+||++||
T Consensus 161 VA~r~k~~gm~vI~~dpi~~~~~-~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 161 VAVRAKAMGMHVIGYDPITPMAL-AEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred HHHHHHhcCceEEeecCCCchHH-HHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 99999999999999999875433 23345555 59999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCC---CccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWM---EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~---~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~ 333 (620)
++||++||++||++|+++|||||||++|||. ++.|-.+||||+|||+|+.|.|+..++...+++++..|+ .| ...
T Consensus 239 GvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~-~~-~~~ 316 (406)
T KOG0068|consen 239 GVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYI-NG-NSA 316 (406)
T ss_pred ceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHh-cc-Ccc
Confidence 9999999999999999999999999987776 678999999999999999999999999999999999996 66 577
Q ss_pred ccccCCC
Q 007040 334 NAISDTE 340 (620)
Q Consensus 334 nvVn~~~ 340 (620)
.+||...
T Consensus 317 g~Vna~~ 323 (406)
T KOG0068|consen 317 GSVNAPE 323 (406)
T ss_pred ceechhh
Confidence 7887654
No 17
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=8.6e-55 Score=456.57 Aligned_cols=270 Identities=18% Similarity=0.222 Sum_probs=236.2
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHH-----HHhcCcEEEEcCC-CChHHHHHHHHHHHHHHH
Q 007040 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL-----AADLGLRLIHVDT-SRAEEIADTVMALLLGLL 130 (620)
Q Consensus 57 l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~a-----a~erGI~VtNtpg-~~a~aVAE~aLaLiLal~ 130 (620)
..++|+++++.. +.+++. .++||||++.|+|+|++|..+ +..+||.|+|+++ .++.+||||++++||+++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~ 111 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWF 111 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHH
Confidence 568899888753 567775 589999999999999998332 3458999999864 789999999999999999
Q ss_pred hccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecC
Q 007040 131 RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD 210 (620)
Q Consensus 131 Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~ 210 (620)
|+++.+... .+.+.|... ...++.|+||||||+|.||+.||++|++|||+|++||++...... . .......
T Consensus 112 r~~~~~~~~-~~~~~w~~~------~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~-~-~~~~~~~ 182 (312)
T PRK15469 112 RRFDDYQAL-QNSSHWQPL------PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG-V-QSFAGRE 182 (312)
T ss_pred cChHHHHHH-HHhCCcCCC------CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-c-eeecccc
Confidence 999988776 478899642 124689999999999999999999999999999999987643221 1 1112346
Q ss_pred CHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCc
Q 007040 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEA 289 (620)
Q Consensus 211 sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~s 289 (620)
+|++++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~ 262 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPES 262 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999996 777889
Q ss_pred cccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCc
Q 007040 290 WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (620)
Q Consensus 290 pL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y 342 (620)
|||++|||++|||+|++|.+. ++...+++|+++|+ +|++|.|.||++.||
T Consensus 263 pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~-~g~~~~~~V~~~~gY 312 (312)
T PRK15469 263 PLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLE-KGERVCGQVDRARGY 312 (312)
T ss_pred hhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHH-cCCCCcccCCcccCC
Confidence 999999999999999999874 68899999999985 999999999999998
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-54 Score=458.68 Aligned_cols=275 Identities=20% Similarity=0.242 Sum_probs=243.7
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--CeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhc
Q 007040 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (620)
Q Consensus 55 ~~l~~AdaVlv~s~~~l~~e~l~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rr 132 (620)
+.+.++|++++...+++++++++++|+ ||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~ 120 (332)
T PRK08605 41 EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRH 120 (332)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcC
Confidence 457789999888777999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH-hhCCCEEEEECCCCCCCCccccCCceecCC
Q 007040 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS-LSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (620)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L-kafG~~V~~~dr~~~~~~~~~~~g~~~~~s 211 (620)
+..+++. ++++.|.... . ...++|+|++|||||+|.||+++|++| ++|||+|++||++..... ...+....+
T Consensus 121 ~~~~~~~-~~~~~~~~~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~ 193 (332)
T PRK08605 121 FNQIQTK-VREHDFRWEP-P--ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDT 193 (332)
T ss_pred hHHHHHH-HHhCCccccc-c--cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCC
Confidence 9998876 4677663211 1 123689999999999999999999999 799999999998864321 122334468
Q ss_pred HHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC---CCC
Q 007040 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WME 288 (620)
Q Consensus 212 L~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~---~~~ 288 (620)
+++++++||+|++|+|++++|.++++.+.|+.||+|++|||++||.++|+++|+++|++|+|+||+||||+.|| +.+
T Consensus 194 l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~ 273 (332)
T PRK08605 194 IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSD 273 (332)
T ss_pred HHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998643 344
Q ss_pred c-----------cccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007040 289 A-----------WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (620)
Q Consensus 289 s-----------pL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn 337 (620)
+ +||.+||||+|||+|++|.+++.++...+++|+.+|+ +|+...+.||
T Consensus 274 ~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~-~g~~~~~~~~ 332 (332)
T PRK08605 274 QRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVL-QTGTTRLRVN 332 (332)
T ss_pred cccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcC
Confidence 3 5999999999999999999999999999999999997 7777777765
No 19
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=6.8e-54 Score=459.94 Aligned_cols=280 Identities=22% Similarity=0.284 Sum_probs=247.8
Q ss_pred EEEEeCCCCCChhHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHH
Q 007040 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa 100 (620)
+|++.+.. ++..+.++.+.++..++...+..+.++++|++++++.+++++++++ .++||||+++++|+||||++++
T Consensus 2 kI~~d~~~---p~~~~~~~~~~~v~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (381)
T PRK00257 2 KIVADENI---PLLDAFFAGFGEIRRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDLDYF 77 (381)
T ss_pred EEEEecCc---hhHHHHHhhCCcEEEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCHHHH
Confidence 56666654 3456677777788888777777778999999999988899999997 5899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
.++||.|+|+||+|+.+||||+++++|++.|+. ..++.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-----------------------g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 78 AEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-----------------------GVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred HHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-----------------------CCCcCcCEEEEECCCHHHHHHHHH
Confidence 999999999999999999999999999998751 135899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh----hhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD----ETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~----~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
|++|||+|++||+...... +.....+|++++++||+|++|+|+|+ .|+||||++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEAE-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRG 209 (381)
T ss_pred HHHCCCEEEEECCcccccc-----cCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCC
Confidence 9999999999998653211 12234689999999999999999999 59999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~n 334 (620)
++||++||+++|++|++.||+|||||+||..+++||.. |||+|||+||+|.++..++..++++||.+|+ ++..+..
T Consensus 210 ~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~-~~~~~~~ 285 (381)
T PRK00257 210 AVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFF-GIPARVS 285 (381)
T ss_pred cccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHH-cCCCccc
Confidence 99999999999999999999999999877778899985 9999999999999999999999999999997 5654433
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=5.1e-54 Score=460.00 Aligned_cols=273 Identities=19% Similarity=0.301 Sum_probs=242.9
Q ss_pred EEEEeCCCCCChhHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHH
Q 007040 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (620)
Q Consensus 21 kVvvL~~~ed~~~~~~~L~~l~~v~~~~~~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa 100 (620)
+|++.+.. +...+.|+...++...+...++.+.+.++|++++++.+.+++++++ .++||||+++++|+||||.+++
T Consensus 2 kIl~d~~~---~~~~~~~~~~~ev~~~~~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (378)
T PRK15438 2 KILVDENM---PYARELFSRLGEVKAVPGRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWL 77 (378)
T ss_pred EEEEeCCc---chHHHHHhhcCcEEEeCCCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHH
Confidence 46666543 3555677777788887766677777899999999988899999986 6899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHH
Q 007040 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (620)
Q Consensus 101 ~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (620)
.++||.|+|+||+|+.+||||++++||++.|+. . .+|.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-----------g------------~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 78 KQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-----------G------------FSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-----------C------------CCcCCCEEEEECcCHHHHHHHHH
Confidence 999999999999999999999999999999851 1 25899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChh----hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 181 LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~----T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
|++|||+|++|||...... .. ....+|++++++||+|++|+|+|++ |+|||+++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~dp~~~~~~----~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 135 LEALGIKTLLCDPPRADRG----DE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred HHHCCCEEEEECCcccccc----cc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCc
Confidence 9999999999998643211 11 1246899999999999999999996 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 257 ~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
++||++||+++|++|++.||+|||||+||..+++|+.++| |+|||+||+|.+...++..++++|+.+|+
T Consensus 210 ~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 210 AVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred hhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987777888988766 99999999999999999999999999997
No 21
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-52 Score=437.39 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=227.5
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHH
Q 007040 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLL 136 (620)
Q Consensus 57 l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~ 136 (620)
..+++++++... +..+++||||++.|+|+|+||+++|.++||.++| +|+++.+||||++++||+++|+++.+
T Consensus 32 ~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 32 YYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred cCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence 457777765432 2346789999999999999999999998887766 58899999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-ecCCHHhh
Q 007040 137 ARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-RMDTLNDL 215 (620)
Q Consensus 137 ~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-~~~sL~eL 215 (620)
.+. .+++.|... ...+|+|++|||||+|+||+++|++|++|||+|++||++.... +.. ...+++++
T Consensus 104 ~~~-~~~g~w~~~------~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~~~~l~el 170 (303)
T PRK06436 104 NYN-MKNGNFKQS------PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GISSIYMEPEDI 170 (303)
T ss_pred HHH-HHcCCCCCC------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------CcccccCCHHHH
Confidence 887 578999743 2357999999999999999999999999999999999975321 121 24689999
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCC
Q 007040 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM 294 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~ 294 (620)
+++||+|++|||+|++|+++|+++.|+.||||++|||+|||+++|++||+++|++|++.||+||||++ |++.++ .+
T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~ 247 (303)
T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NP 247 (303)
T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 444444 68
Q ss_pred CcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCccCC
Q 007040 295 PNVLILPRSA-DYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (620)
Q Consensus 295 pNVIlTPHiA-g~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~~~ 345 (620)
|||++|||++ ++|.++..++...+++||.+|+ .|+ |.|+||.+ +|..+
T Consensus 248 ~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~V~~~-~y~~~ 296 (303)
T PRK06436 248 DNVILSPHVAGGMSGEIMQPAVALAFENIKNFF-EGK-PKNIVRKE-EYIVR 296 (303)
T ss_pred CCEEECCccccccCHHHHHHHHHHHHHHHHHHH-cCC-CCceEchH-Hheee
Confidence 9999999976 5889999999999999999997 787 47999776 46554
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=9.3e-53 Score=440.96 Aligned_cols=275 Identities=26% Similarity=0.351 Sum_probs=240.0
Q ss_pred cccceEEEEe-cCCCCCHHHHhcC-CCCeEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccH
Q 007040 57 IEAAAAVLLH-SLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (620)
Q Consensus 57 l~~AdaVlv~-s~~~l~~e~l~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~ 134 (620)
+.....++.+ .....+.+.+.++ |++|+|+++|+|+||||+++|++|||+|+|+|+.++++|||++++++|.++|++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~ 137 (336)
T KOG0069|consen 58 IADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFS 137 (336)
T ss_pred ccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhh
Confidence 3344333333 3334556666665 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh
Q 007040 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (620)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (620)
..++. ..++.|. ..+-...+..+.|++|||+|+|+||+.+|++|++||+.+.|++|+....+.....+.. ..++++
T Consensus 138 ~g~~~-~~~g~w~--~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~ 213 (336)
T KOG0069|consen 138 EGNEM-VRNGGWG--WAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEE 213 (336)
T ss_pred hhhhh-hhcCCcc--ccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHH
Confidence 99886 5888992 2222234468999999999999999999999999999999999987655544333333 469999
Q ss_pred hhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCC
Q 007040 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (620)
Q Consensus 215 LL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~ 294 (620)
++.+||+|++|||+|++|+|+||++.|.+||+|++|||++||+++|++++++||++|+|+||+||||+++|+.+++|+.+
T Consensus 214 ~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~ 293 (336)
T KOG0069|consen 214 LLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTL 293 (336)
T ss_pred HHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866999999999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 007040 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336 (620)
Q Consensus 295 pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvV 336 (620)
+||++|||+|+.|.++..+|...++.|+.+|| .|++....|
T Consensus 294 dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~-~g~~~~~~~ 334 (336)
T KOG0069|consen 294 DNVVILPHIGSATLETREKMAEIVLNNLLAFF-SGKPLLTPV 334 (336)
T ss_pred cceeEecccccCcHHHHHHHHHHHHHHHHHHH-ccCCCCCcC
Confidence 99999999999999999999999999999997 777555444
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=8.7e-44 Score=344.65 Aligned_cols=177 Identities=35% Similarity=0.479 Sum_probs=150.2
Q ss_pred HHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc
Q 007040 123 MALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF 202 (620)
Q Consensus 123 LaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~ 202 (620)
|++||+++|+++.++.. .+++.|... .....++++|++|||||+|+||+.+|++|++|||+|++|||+........
T Consensus 1 i~l~L~~~R~~~~~~~~-~~~~~W~~~---~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~ 76 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEA-QRNGEWASR---ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD 76 (178)
T ss_dssp HHHHHHHHTTHHHHHHH-HHTTBHHHH---TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH
T ss_pred ChHHHHHHhCHHHHHHH-HHcCCCCCC---cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc
Confidence 68999999999999987 588999111 12345789999999999999999999999999999999999986433112
Q ss_pred cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 203 ~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
..+. ...+|++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus 77 ~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 77 EFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp HTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred cccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 2233 556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCccccCCCcEEEcCCCC
Q 007040 283 G-PQWMEAWVREMPNVLILPRSA 304 (620)
Q Consensus 283 ~-P~~~~spL~~~pNVIlTPHiA 304 (620)
+ |++.++|||++||||+|||+|
T Consensus 156 ~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 156 PEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp SSSSSTTHHHHTSTTEEEESS-T
T ss_pred CCCCCCCChHHcCCCEEEeCccC
Confidence 6 667788999999999999997
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=100.00 E-value=5.4e-43 Score=364.90 Aligned_cols=399 Identities=25% Similarity=0.362 Sum_probs=336.8
Q ss_pred CCCCEEEEeCCCCCChhHHhhccCCceEEecCC---CCCcccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCC
Q 007040 17 TPLPSVVALNCIEDCVLEQDSLAGVALVEHVPL---GRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDR 93 (620)
Q Consensus 17 ~~kPkVvvL~~~ed~~~~~~~L~~l~~v~~~~~---~~l~e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D 93 (620)
-..|.+.+++. .++..++..|+.++.+-+++. .++.+..+.+|...+.+....++++-+++++.||+|..+|.|+|
T Consensus 29 h~~p~~aLld~-rdc~vemPilk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~d 107 (435)
T KOG0067|consen 29 HPRPLVALLDG-RDCGVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYD 107 (435)
T ss_pred CCCcchhhccc-ccccccchhhhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccc
Confidence 35667766653 566777778888877777763 34555667777777777777899999999999999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCC---CCCCcceeecCcEEEEEeC
Q 007040 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVGR 170 (620)
Q Consensus 94 ~VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIGl 170 (620)
++|+.+|.+.||.|||.|+...+.+|+-++.+||.++|+.....+. .+++.|.+... ....+...++|.++|++|+
T Consensus 108 n~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~-l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~ 186 (435)
T KOG0067|consen 108 NIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQA-LREGTCTQGLEQVREAACGLARIRGPTLGLIGF 186 (435)
T ss_pred hhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhh-hcccceeechhhhhhhhhccccccccceeeecc
Confidence 9999999999999999999999999999999999999999888775 67888865432 2334557789999999999
Q ss_pred ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 171 SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 171 G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
|++|++++.++++||+.|+.||++..... ....+...+-+|.+++.++|.|++||-+.+.++++|+.-.+.+|+.|+++
T Consensus 187 gr~g~av~~~A~afg~~~ifydp~~~~g~-~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGafl 265 (435)
T KOG0067|consen 187 GRTGQAVALRAKAFGFVVIFYDPYLIDGI-DKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFL 265 (435)
T ss_pred ccccceehhhhhcccceeeeecchhhhhh-hhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceE
Confidence 99999999999999999999999986654 23345566667999999999999999999999999999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeE-eecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCA-LDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAa-LDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G 329 (620)
+|++||.++|+++|.++|+.|++.|++ -+ ...-||.+.||.|++||.+|+++.+.-++.+.++
T Consensus 266 vnta~gglvdekaLaqaLk~G~i~~aa~~~------~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa---------- 329 (435)
T KOG0067|consen 266 VNTARGGLVDEKALAQALKSGRIRGAAPRS------FKQGPLKDAPNLICTPHTAWYSEAASVELREVAA---------- 329 (435)
T ss_pred eeecccccCChHHHHhhhccCceecccCcc------cccccccCCCCCCCCcccchhhHHHHHHHHHHHh----------
Confidence 999999999999999999999999888 11 1223455777777777777776643322211000
Q ss_pred CCCCccccCCCCccCCCcchhhhhhhcccccccccccccccccccccCCcccccccccccCCCCccccCCCccccccccc
Q 007040 330 VIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTK 409 (620)
Q Consensus 330 ~~p~nvVn~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (620)
T Consensus 330 -------------------------------------------------------------------------------- 329 (435)
T KOG0067|consen 330 -------------------------------------------------------------------------------- 329 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccchhhhchhhhhccccCCCCccccccccCcccCCCCCccccccccCCCCCccccccCCCCcchhhcchhhhhh
Q 007040 410 SDGRRSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLS 489 (620)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (620)
.++|.|+|+++..+ +|..+.+|....++-
T Consensus 330 --------------------------------------------------~eiR~ai~g~ip~~-l~~cvnkE~~~~~~p 358 (435)
T KOG0067|consen 330 --------------------------------------------------LEIRRAITGRIPDS-LRNCVNKEFSPTNAP 358 (435)
T ss_pred --------------------------------------------------hhhhhccCCCCchh-HHHHHhhhhccccCC
Confidence 04577899999998 999999999999999
Q ss_pred hcccccccccccccccceEEEEEEecCCceEEeeecccccceEEeeeccccCCCccceEEE-EecCccccccccccCCce
Q 007040 490 RSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFTAGGKL 568 (620)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 568 (620)
-++++..++.+++++ ++++|+.+-. +|||.+ ++|+|+||+ +|++|++|
T Consensus 359 ~s~~~~~a~h~eL~g---~~~~y~~~~~---------------------------aap~~~paa~~~~i~~-~~~~~~~l 407 (435)
T KOG0067|consen 359 WSGIDGQAFHPELNG---ATYRYPPGIV---------------------------AAPFILPAANEGIIPG-GIPAGHNL 407 (435)
T ss_pred ccccchhhcchhhhc---cccccCCcce---------------------------ecccCCcccccccccc-cccccCCC
Confidence 999999999999999 8888877644 999999 999999999 99999999
Q ss_pred eeecccceEEEeeccccccccceeccccce
Q 007040 569 LQINRRMEFVFASHSFDAWESWAIEGPLEE 598 (620)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (620)
+|+|+.||++|. +|++|++|..|++..|
T Consensus 408 p~v~~~~q~psp--n~~~~~~~n~eh~~~e 435 (435)
T KOG0067|consen 408 PTVAHPSQAPSP--NQPTKHGDNREHPNDE 435 (435)
T ss_pred ccccCcccCCCC--CCcccCCccccCcCCC
Confidence 999999999999 9999999999998764
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.79 E-value=8.7e-19 Score=192.43 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=132.7
Q ss_pred ecccCCccc-hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEE
Q 007040 88 LGSSDRTVD-SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166 (620)
Q Consensus 88 ~gaG~D~VD-~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVG 166 (620)
+++|+..+- .+.....+|+|+|+|++++.++||+++++++++...+ ++.+. ..+.|+++|
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~-------~R~~~------------~~LaGKtVg 258 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI-------FRATD------------VMIAGKTVV 258 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH-------HHhcC------------CCcCCCEEE
Confidence 446664431 1122346899999999999999999999999988322 22221 258999999
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
|||+|.||+.+|++|++|||+|+++++.+.....+...|.. ..+++++++.+|+|++|+ .|.++|+.+.|+.||+
T Consensus 259 VIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKp 333 (476)
T PTZ00075 259 VCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKN 333 (476)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHHhccCC
Confidence 99999999999999999999999998776443222333443 347999999999999985 3788999999999999
Q ss_pred CcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCC
Q 007040 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWME 288 (620)
Q Consensus 247 gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~ 288 (620)
|++|||+||+ |++.++++|+.+. ++|+++..|...
T Consensus 334 GAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 334 NAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred CcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 9999999999 7888888887643 789988644333
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.75 E-value=3.2e-18 Score=178.41 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=126.5
Q ss_pred CCCHHHHhcCCCCeEEEEecccCCccchH-HHHhcCcEEE------EcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 007040 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSA-LAADLGLRLI------HVDTSRAEEIADTVMALLLGLLRRTHLLARHALS 142 (620)
Q Consensus 70 ~l~~e~l~~lp~LK~I~~~gaG~D~VD~~-aa~erGI~Vt------Ntpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~ 142 (620)
.+++++++++|. ++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++++++...
T Consensus 81 ~l~~~~l~~~~~---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------ 145 (287)
T TIGR02853 81 VLTPELLESTKG---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------ 145 (287)
T ss_pred cccHHHHHhcCC---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------
Confidence 567899999983 66667788888888 8999999999 9999999999999998777431
Q ss_pred hCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCCHHhhhcCCc
Q 007040 143 ASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAASD 220 (620)
Q Consensus 143 ~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~~sD 220 (620)
. .+++|++++|||+|.||+.+|+.|+++|++|++++|+..........+.. ...++.+++.++|
T Consensus 146 --~------------~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aD 211 (287)
T TIGR02853 146 --D------------FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEID 211 (287)
T ss_pred --C------------CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCC
Confidence 0 24789999999999999999999999999999999987432211112222 2346788999999
Q ss_pred EEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 221 vVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
+|++|+|.+ +++.+.++.|++++++||++..+
T Consensus 212 iVint~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 212 IVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred EEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 999999975 78889999999999999999844
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.72 E-value=4.3e-17 Score=150.41 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=77.7
Q ss_pred EEEeCCCCCChhHHhhccC-CceEEecCCCCCc--ccccccceEEEEecCCCCCHHHHhcCCCCeEEEEecccCCccchH
Q 007040 22 VVALNCIEDCVLEQDSLAG-VALVEHVPLGRLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSA 98 (620)
Q Consensus 22 VvvL~~~ed~~~~~~~L~~-l~~v~~~~~~~l~--e~~l~~AdaVlv~s~~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~ 98 (620)
|++++.+ .+...+.|+. + ++..+...... .+.++++|+++++..+++++++++++|+||||++.|+|+|+||++
T Consensus 1 ili~~~~--~~~~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 77 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLE 77 (133)
T ss_dssp EEESSS---SHHHHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HH
T ss_pred eEEeccC--CHHHHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHH
Confidence 4555543 3445566666 5 78777622221 256789999999987779999999999999999999999999999
Q ss_pred HHHhcCcEEEEcCCCChHHHHHHH
Q 007040 99 LAADLGLRLIHVDTSRAEEIADTV 122 (620)
Q Consensus 99 aa~erGI~VtNtpg~~a~aVAE~a 122 (620)
+|+++||.|+|+||+++.+||||+
T Consensus 78 ~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 78 AAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.54 E-value=4.5e-14 Score=147.92 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=130.6
Q ss_pred cccccceEEEEecC----------------CCCCHHHHhcCCCCeEEEEecccCCccchHHHHhcCcEEEEcCCC-----
Q 007040 55 GKIEAAAAVLLHSL----------------AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTS----- 113 (620)
Q Consensus 55 ~~l~~AdaVlv~s~----------------~~l~~e~l~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNtpg~----- 113 (620)
+.++++|+|+..-. ..++.+.++.+|+...+. .|.+.++++ +.|.++||.+++....
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 44677888875511 123678999999997555 588999988 8889999999987754
Q ss_pred -ChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEEC
Q 007040 114 -RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD 192 (620)
Q Consensus 114 -~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~d 192 (620)
++.++||.++.+++... ...+.|++++|||+|.+|+.++..|+++|++|+++|
T Consensus 129 ~ns~~~aegav~~a~~~~--------------------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~ 182 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEHT--------------------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGA 182 (296)
T ss_pred hccHhHHHHHHHHHHHhC--------------------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999777543211 023689999999999999999999999999999999
Q ss_pred CCCCCCCccccCCce--ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 193 VPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 193 r~~~~~~~~~~~g~~--~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
++..........+.. ...++.+.+.++|+||+++|. .+++++.++.|++++++||++..
T Consensus 183 r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 183 RKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 986443222222332 224677889999999999984 47889999999999999999863
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.53 E-value=1.4e-14 Score=159.33 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=103.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|++++|+|+|.||+.+|+++++||++|+++++.+.....+...+... .++++++..+|+|+. +..|.++|+.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v-v~leEal~~ADVVI~----tTGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQV-LTLEDVVSEADIFVT----TTGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee-ccHHHHHhhCCEEEE----CCCCccchHH
Confidence 37899999999999999999999999999999998875433333344433 478999999999997 3457899999
Q ss_pred HHhhccCCCcEEEEcCC-ChhhcHHHHHHH--HHcCCcceeEeecCCCCC
Q 007040 239 ECLQHIKPGAFLVNTGS-SQLLDDCAVKQL--LIDGTLAGCALDGAEGPQ 285 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgR-G~vVDe~AL~~A--L~~G~I~GAaLDV~E~P~ 285 (620)
+.|+.||+|++|||+|| +..||..+|.++ ++.+.+. +.+|+|+-|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 9999998653
No 30
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.41 E-value=3e-13 Score=142.70 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=78.9
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
..|+|++|||||+|+||+++|++|++||++|++|++.......+...+... .+++++++.||+|++|||+ ++|+++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 468999999999999999999999999999999986543322222234443 4899999999999999997 77899999
Q ss_pred HHHhhccCCCcEEEEc
Q 007040 238 AECLQHIKPGAFLVNT 253 (620)
Q Consensus 238 ~~~L~~MK~gAiLINv 253 (620)
.+.+..||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999988753
No 31
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.41 E-value=4.7e-13 Score=145.71 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=102.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|++|+|+|+|.||+.+|++++++|++|+++|+.+.....+...|. ...++++++..+|+|+.+.. +.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 378999999999999999999999999999999877644333333444 33478899999999987654 6789999
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCcceeEeecCCC
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTLAGCALDGAEG 283 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~~AL~~G~I~GAaLDV~E~ 283 (620)
+.|..||+|++|+|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999888878899999873
No 32
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.39 E-value=4.9e-13 Score=127.92 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=94.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc-CHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII-NAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI-~~~~L 241 (620)
++|||||+|.||..||++|...|++|++||+++.........+....+++.++++.+|+|++++|..++++.++ +...+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 57999999999999999999999999999998765554455677888999999999999999999988888876 33378
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+.+++|.++||++....-....+.+.+....+. .+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 889999999999999999999999999876654 7776
No 33
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.32 E-value=4.5e-12 Score=132.17 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=103.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~ 239 (620)
++|||||+|.||.+||++|...|+.|.+||+++.+ .......|.....+..++.+.+|+||+|+|..++.+.++- ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999876 3333345777788899999999999999999999999874 57
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.++.||||+++||++..+......+.++++.+.+. .||.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 99999999999999999999999999999998876 7775
No 34
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.22 E-value=2.7e-11 Score=125.69 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=94.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc-C-HHHh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII-N-AECL 241 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI-~-~~~L 241 (620)
+|||||+|.||..||+.|...|++|++||+++.........+.....++.+++++||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 4899999999999999999999999999998754443333445556688899999999999999988888775 3 3467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEee
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLD 279 (620)
..+++|+++||+++....+..++.+.+++..+. .+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 889999999999999999999999999886544 455
No 35
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.21 E-value=3.2e-11 Score=132.18 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=111.2
Q ss_pred ecccCCcc-chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEE
Q 007040 88 LGSSDRTV-DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166 (620)
Q Consensus 88 ~gaG~D~V-D~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVG 166 (620)
+++|+..+ ......+++++|.|++..+....-|...+.-.+....+. +.. ...+.|++++
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~-------rat------------~~~l~Gk~Vl 216 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK-------RAT------------NVLIAGKVVV 216 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH-------Hhc------------cCCCCCCEEE
Confidence 45666443 122223578999999999887765544333322221110 000 0136899999
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
|+|+|.||+.+|..|+++|++|+++|+.+.........|.. ..++++++..+|+|+.+.. +.++|+.+.|..||+
T Consensus 217 ViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~ 291 (425)
T PRK05476 217 VAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKD 291 (425)
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCC
Confidence 99999999999999999999999999887543322333433 3478999999999998753 567999999999999
Q ss_pred CcEEEEcCCChh-hcHHHHHH
Q 007040 247 GAFLVNTGSSQL-LDDCAVKQ 266 (620)
Q Consensus 247 gAiLINvgRG~v-VDe~AL~~ 266 (620)
|++++|+|+... +|.++|.+
T Consensus 292 GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 292 GAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred CCEEEEcCCCCCccChHHHhh
Confidence 999999999876 67777654
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.20 E-value=3.8e-11 Score=124.70 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=95.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|||||+|.||..+|+.+...|++|++||+++.........+.....++++++.+||+|++++|.+..+..++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 479999999999999999999999999999987543322333455567899999999999999999988888763 346
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+..+++|.++||+++.......++.+.+.+..+. .+|.
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~--~~d~ 120 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE--MLDA 120 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7889999999999999998888999999876554 4443
No 37
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.18 E-value=5.8e-11 Score=124.14 Aligned_cols=115 Identities=10% Similarity=0.105 Sum_probs=97.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHHh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECL 241 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~L 241 (620)
+|||||+|.||.+||+.|...|++|++||+++.........+.....++.++++.||+|++|+|....++.++. ...+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~ 82 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC 82 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHh
Confidence 79999999999999999999999999999987554433334555667889999999999999999887787764 3467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
..+++|.++||++++.......+.+.+.+..+. .+|.
T Consensus 83 ~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 789999999999999999999999999988766 5775
No 38
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.18 E-value=6.5e-11 Score=123.90 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=96.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC---CcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||..||++|...|++|++||++..........+.....++++++++ +|+|++|+|..+.++.+++ .
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence 36999999999999999999999999999998754433333455666789998876 6999999998888888884 5
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+..+++|.++||+++....+..++.+.+....+. .+|.
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 77889999999999999999999999999887664 5774
No 39
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.11 E-value=1.9e-10 Score=120.32 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=97.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC---CcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||..||+.|...|++|.+||+++.........+.....+++++++. +|+|++++|..+.+..++. .
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-E 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-H
Confidence 37999999999999999999999999999998755443333456666788888876 6999999998878888874 5
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+..+++|.++||++++......++.+.+++..+. .+|.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999988775 5675
No 40
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.09 E-value=1.2e-10 Score=112.19 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=75.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|+++.|+|||.+|+.+|+.|+++|++|++++..+....++..+|... .++++++..+|+|+.+.. ..++|..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG----~~~vi~~ 94 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATG----NKDVITG 94 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCC----CccccCH
Confidence 47999999999999999999999999999999999875554555566655 489999999999998866 3478899
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVK 265 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~ 265 (620)
+.|.+||+|+++.|+|.-.. +|-+.|.
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred HHHHHhcCCeEEeccCcCceeEeecccc
Confidence 99999999999999998655 4555444
No 41
>PLN02256 arogenate dehydrogenase
Probab=99.05 E-value=9.4e-10 Score=116.07 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=83.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh-cCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~sDvVil~lPlT~~T~~lI~~ 238 (620)
-++++|||||+|.||+.+|+.|+.+|++|++||++... ......++....++++++ ..+|+|++|+|.. .+..++..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~ 111 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS 111 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh
Confidence 46788999999999999999999999999999988632 212223444556788876 4799999999954 66777754
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
-....+++++++++++.++-+..+++.+.+..
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 33567899999999999776666677766644
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.01 E-value=6.6e-10 Score=124.06 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=96.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----CCce---ecCCHHhhhcC---CcEEEEcccCChhhH
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SAAR---RMDTLNDLLAA---SDVISLHCAVTDETI 233 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~----~g~~---~~~sL~eLL~~---sDvVil~lPlT~~T~ 233 (620)
+|||||+|.||..||++|...|++|.+|||+....+.... .|.. ...++.++.+. +|+|++++|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 5999999999999999999999999999998755442221 1322 45688888876 999999999999999
Q ss_pred hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.++ ...+..+++|.++||+|....-+...+.+.+++..+. .||.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~--flda 131 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL--YLGM 131 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEeC
Confidence 998 5688899999999999999999999999999988776 6664
No 43
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.00 E-value=1.2e-09 Score=114.38 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~ 240 (620)
++|||||+|+||..||+.|...|++|.+||+++. .......+.....+..+++..||+|++++|..+.++.++. ...
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 3699999999999999999999999999998763 2222334556667888999999999999999888888763 236
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
+..+++|.++|+++....-....+.+.+.+..+. .+|.
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 7788999999999999999999999999887554 6675
No 44
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.97 E-value=1e-09 Score=114.22 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=105.5
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--C
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--N 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~ 237 (620)
...++||+||+|.||..|+..|...|++|++||++..........|....+++.|+.+.||+||.++|.....+.++ .
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 46789999999999999999999999999999999988777777788888999999999999999999999999987 3
Q ss_pred HHHhhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 238 AECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 238 ~~~L~~MK~gAiL-INvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
...|+.+++|... |+.+.-...-...|.+++...... .+|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 4588888899888 899998888888899999887655 6775
No 45
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.95 E-value=8.3e-10 Score=117.58 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=76.5
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..|.|++|||||+|+||+++|+.|+.+|++|+++++...... .+...+... .++.+++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~-~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEV-LTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCee-CCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 458999999999999999999999999999998877643322 122234444 4899999999999999997755 7777
Q ss_pred CHHHhhccCCCcEEEEcCCC
Q 007040 237 NAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG 256 (620)
+.+.+..|++|++| -.+-|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 77888999999988 44444
No 46
>PLN02712 arogenate dehydrogenase
Probab=98.95 E-value=1.5e-09 Score=125.30 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=88.6
Q ss_pred cceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc-CCcEEEEcccCChhhHh
Q 007040 156 GMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQ 234 (620)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~ 234 (620)
.+..+.+++|||||+|.||+.+|+.|+++|++|++||++... ......|+....++++++. .+|+|++|+|. ..+..
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~ 440 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEK 440 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHH
Confidence 446778999999999999999999999999999999988532 2222345555678888876 58999999994 67888
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++..-.+..||+|+++||++.++-...+++.+.+..
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 887655557999999999999985555556555544
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.91 E-value=3e-09 Score=111.39 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=90.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhh---hcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||..||+.|...|++|.+||+++.........+.....+++++ +..+|+|++++|.. .+..++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 37999999999999999999999999999998755443333333334556554 45689999999987 778887 45
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
....+++|.++||++.+...+...+.+.+.+..+. .+|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 77889999999999999888999998888876664 5665
No 48
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.91 E-value=3.2e-09 Score=116.29 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=85.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|++|+|+|+|.||..+|+.++++|++|+++|+.+.....+...|... .++++++..+|+|+.+.. +.++|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~-~~~~e~v~~aDVVI~atG----~~~~i~~ 273 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEV-MTMEEAVKEGDIFVTTTG----NKDIITG 273 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEE-ccHHHHHcCCCEEEECCC----CHHHHHH
Confidence 46899999999999999999999999999999998875544444455543 367888999999998754 4568888
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~~ 266 (620)
+.|..||+|+++||+|++.+ +|..+|..
T Consensus 274 ~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 274 EHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 88999999999999999876 77777664
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=98.90 E-value=3.5e-09 Score=130.61 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=102.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--CH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NA 238 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~~ 238 (620)
...+|||||+|.||..||++|...|+.|.+||+++.........|+...+++.++.+.||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 3567999999999999999999999999999998766554445567778899999999999999999999999886 34
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
..+..+++|.++|+++....-....+.+.+.+..-....+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 678889999999999999999999999999876622247776
No 50
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.89 E-value=3.5e-09 Score=110.19 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=91.8
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--HHHhhcc
Q 007040 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECLQHI 244 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~--~~~L~~M 244 (620)
|||+|.||.+||+.|...|++|++||++..........+.....++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987554433334555567899999999999999998877777762 4567789
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 245 K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999988877778888888876554 5774
No 51
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.88 E-value=4.5e-09 Score=116.99 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=96.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----CC--ceecCCHHhhhc---CCcEEEEcccCChhhHh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SA--ARRMDTLNDLLA---ASDVISLHCAVTDETIQ 234 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~----~g--~~~~~sL~eLL~---~sDvVil~lPlT~~T~~ 234 (620)
+|||||+|.||..||++|...|++|.+||++....+.... .+ .....++++++. ++|+|++++|....+..
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~ 82 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDE 82 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHH
Confidence 6999999999999999999999999999998765332111 12 234678999886 48999999999999999
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
++ ...+..+++|.++||++.+...|...+.+.+.+..+. .||+
T Consensus 83 vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 83 TI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred HH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 98 4578889999999999999999999999999998876 6665
No 52
>PLN02858 fructose-bisphosphate aldolase
Probab=98.86 E-value=5e-09 Score=129.24 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=99.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc--CHH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NAE 239 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI--~~~ 239 (620)
.++|||||+|.||.+||++|...|++|++||+++.........+.....++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999998755443333455556789999999999999999999999887 346
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHc--CCcceeEeecC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLID--GTLAGCALDGA 281 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~--G~I~GAaLDV~ 281 (620)
.+..+++|.++||++....-....+.+.+.+ ..+ ..+|..
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~--~~lDAP 445 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDI--KLVDAP 445 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCc--EEEEcc
Confidence 7889999999999999998888899999887 444 367753
No 53
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.84 E-value=1.1e-08 Score=106.01 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=87.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++|||||+|.||+.+|..|+..|++|++||++..........+.. ...+..+.+.+||+|++++|... +..++ .+..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 369999999999999999999999999999976443322222321 12222356789999999999543 33343 4566
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCCC
Q 007040 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg 305 (620)
..+++++++++++.-+.--.+++.+.. ...+.++.+-..+. ......-|+...++++||+-..
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~~-~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKLH-PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHhh-CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence 778999999999986643333222221 11222111111110 0011223677788999997654
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.80 E-value=1.2e-08 Score=113.59 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=92.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-----CceecCCHHhhh---cCCcEEEEcccCChhhHhhc
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDLL---AASDVISLHCAVTDETIQII 236 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eLL---~~sDvVil~lPlT~~T~~lI 236 (620)
|||||+|.||..||++|...|++|++||++....+..... ++....++.++. .++|+|++++|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 8999999999999999999999999999987554422211 133455777766 46899999999988888888
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
...+..+++|.++||++.....|...+.+.+.+..+. .+|+
T Consensus 82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 4577889999999999999999999999999887765 6665
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.78 E-value=3.8e-08 Score=108.71 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=95.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
++|+||| +|.||+.+|+.|+..|++|++|+++..... .....++....++.+.+..+|+|++++|.. .+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 999999999999999999999998764421 112234444567888999999999999964 455665 456
Q ss_pred hhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC-CCccccCCCcEEEcCCC
Q 007040 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPNVLILPRS 303 (620)
Q Consensus 241 L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~-~~spL~~~pNVIlTPHi 303 (620)
...+++++++++++..+....+++.+.+..+ . ..+.. +|.. +..+++....++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~--~~V~~--HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-V--EILPT--HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-C--EEEEc--CCCCCCCCcccCCCEEEEecCC
Confidence 6778999999999987655556666655432 1 12222 2332 22356777889999965
No 56
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.78 E-value=3e-08 Score=104.00 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=90.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCc--eecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++|+|||+|.||..+|..|+..|. +|++||++..........+. ....++++++..+|+|++++|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998885 89999998643332222222 23356788899999999999964 233333
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--C-----CCCCCccccCCCcEEEcCCCCC
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--G-----PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~-----P~~~~spL~~~pNVIlTPHiAg 305 (620)
.+....++++.++++++....--.+++.+.+.. .+ ..+..+. . |......|+...+++++|+.+.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~--~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GV--HFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CC--eEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 345567899999999987653333333333322 11 1333311 0 1112346777788999996544
No 57
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.72 E-value=4.3e-08 Score=105.44 Aligned_cols=136 Identities=20% Similarity=0.185 Sum_probs=90.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--ccCCce--ecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--FPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~--~~~g~~--~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+|||+|.||.++|+.|+..|+.|.+|++........ ...+.. ...++++++++||+|++++|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 469999999999999999999999888888766432211 111221 2356788899999999999974 5666664
Q ss_pred HHhh-ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC---------CCccccCCCcEEEcCCCCC
Q 007040 239 ECLQ-HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---------MEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 239 ~~L~-~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~---------~~spL~~~pNVIlTPHiAg 305 (620)
+... .+++++++++++.-+.-..+++.+.+.. .. -.+.. +|.+ ....|+.....++||+-..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~--~~ig~--HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LI--RFVGG--HPMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CC--eEEee--CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence 3333 4889999999998775444444433221 11 23333 2221 2345777788999996543
No 58
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.71 E-value=5.2e-08 Score=102.46 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=69.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+++|||||+|.||.++|+.|...|++|.+|+++.. .++.++++++|+|++++|. +....++.. .
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-V 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-H
Confidence 467899999999999999999999999999998752 3688899999999999997 477777743 2
Q ss_pred hh-ccCCCcEEEEcCCCh
Q 007040 241 LQ-HIKPGAFLVNTGSSQ 257 (620)
Q Consensus 241 L~-~MK~gAiLINvgRG~ 257 (620)
.. .+++++++|++++|-
T Consensus 68 ~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 68 QALNLPPETIIVTATKGL 85 (308)
T ss_pred HHhcCCCCcEEEEeCCcc
Confidence 23 478999999998753
No 59
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.71 E-value=7.9e-08 Score=100.24 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=88.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccC------------C-ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS------------A-ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~------------g-~~~~~sL~eLL~~ 218 (620)
++|||||+|.||..||..+...|++|++||++...... .... + .....++ +.++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 57999999999999999999999999999998744220 0000 1 1223344 56799
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+.|+|..++.+..+-.+....++++++|+ |++.-.+ ..+.+.+.. ....+++-.+. ||. ..+-+
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~---~~l~~~~~~-~~r~~g~h~~~-pp~------~~~lv 152 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISI---TRLASATQR-PQQVIGMHFMN-PPP------IMKLV 152 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-CcceEEEeccC-Ccc------cCceE
Confidence 999999999999998888777778899999987 7777643 345555432 12223333333 332 13446
Q ss_pred EEcCCC
Q 007040 298 LILPRS 303 (620)
Q Consensus 298 IlTPHi 303 (620)
.+.|+-
T Consensus 153 eiv~g~ 158 (295)
T PLN02545 153 EIIRGA 158 (295)
T ss_pred EEeCCC
Confidence 677763
No 60
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.69 E-value=1.3e-07 Score=98.48 Aligned_cols=129 Identities=13% Similarity=0.068 Sum_probs=90.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------c-----------------CCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------P-----------------SAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------~-----------------~g~~~~~sL~eLL~~ 218 (620)
++|+|||+|.||..+|..|...|++|++||+++....... . .......++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 4799999999999999999999999999999864432110 0 012334678889999
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL-INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+.|+|...+.+..+-.+..+.++++++| +|++...+ ..+.+.+.. .-...++..+ .|+. ..+=+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~-~Pv~------~~~Lv 150 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF-NPVH------KMKLV 150 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC-CCcc------cCceE
Confidence 99999999988877665555566778999977 78887554 445555432 3333466555 4443 23445
Q ss_pred EEcCC
Q 007040 298 LILPR 302 (620)
Q Consensus 298 IlTPH 302 (620)
.+.|+
T Consensus 151 e~v~g 155 (288)
T PRK09260 151 ELIRG 155 (288)
T ss_pred EEeCC
Confidence 56664
No 61
>PLN02712 arogenate dehydrogenase
Probab=98.69 E-value=3.4e-08 Score=114.25 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=81.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh-cCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~sDvVil~lPlT~~T~~lI~~ 238 (620)
-+.++|||||+|.||+.+|+.|+.+|++|++||++... ..+...++....++++++ ..+|+|++|+|. ..+..++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 35578999999999999999999999999999987432 222234555566788866 569999999995 467788866
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
-.+..|++|++|+|+++-+..--+++.+.+..
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 44567999999999987664334445555433
No 62
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.68 E-value=2.7e-07 Score=100.05 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=71.7
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
..++|+||| +|.||+.+|+.|+..|+.|.+||+... .++++++.+||+|++|+|... +..++. +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~~-~ 161 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVIA-R 161 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H
Confidence 457899999 999999999999999999999998531 356788899999999999774 455553 3
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
+..+++|+++++++..+..-..++.+.
T Consensus 162 -l~~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 162 -LPPLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -HhCCCCCcEEEECCCccHHHHHHHHHh
Confidence 444999999999988654444444444
No 63
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.68 E-value=8.5e-08 Score=100.27 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=92.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEE--EEECCCCCCCCccccCCcee--cCC-HHhhhcCCcEEEEcccCChhhHhhc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSV--LYFDVPEGKGKVTFPSAARR--MDT-LNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V--~~~dr~~~~~~~~~~~g~~~--~~s-L~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
-++|+|+|+|.||+.+|+.++..|+.| +++|++..........++.. ..+ +.+.+..+|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 367999999999999999999999976 55555543333333333322 123 367778899999999955 455555
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCC---CCccccCCCcEEEcCCCC
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---MEAWVREMPNVLILPRSA 304 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~---~~spL~~~pNVIlTPHiA 304 (620)
. +....+|+|+++++++.-+----+++.+.+.++. ...+ -+|.. ...+++..-.+|+||.-.
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg----~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVG----GHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEe----cCCCCCCcccccccCCCEEEEcCCCC
Confidence 3 3444899999999999987666666666654421 1111 13443 345888888999999543
No 64
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.65 E-value=1.1e-07 Score=98.26 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=82.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCce-ecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++|||||+|.||+.+|..|+..|+ +|++||++..........+.. ...++.++. ++|+|++++|... +..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 369999999999999999998775 899999986443322223332 234677765 5999999999653 44444 34
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC---------CCCccccCCCcEEEcCCC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---------WMEAWVREMPNVLILPRS 303 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~---------~~~spL~~~pNVIlTPHi 303 (620)
... ++++++++++|.-. ..+.+.+... ..+..++. +|. .....+++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~k----~~i~~~~~~~-~~~~~v~~--hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTK----AKIIESVPKH-IRKNFIAA--HPMAGTENSGPKAAIKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccch----HHHHHHHHHh-cCCCEEec--CCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence 555 89999999987632 3344444332 11123333 232 112235565567888854
No 65
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.64 E-value=1.9e-07 Score=95.62 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=77.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEE-CCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM----SVLYF-DVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~----~V~~~-dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|+||.+||+.|...|+ +|++| +++..........++....+..+++.+||+|++++| ......++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 479999999999999999998888 89999 887654333333456666788889999999999997 555666663
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+....++++.++|++.-| +..+.+.+.+
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~ 107 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWA 107 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHc
Confidence 455668899999988665 3555555554
No 66
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.61 E-value=2.1e-07 Score=97.34 Aligned_cols=162 Identities=18% Similarity=0.127 Sum_probs=103.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (620)
++|||||.|.||..||..+...|++|+.||+++...+. ....+ .....++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 37999999999999999999999999999998754331 11111 1145677 45799
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhcc-CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~M-K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+-++|.+.+.+.-+-...-+.+ +++++|++.+.+-.+.+ +..++.. .-..+++..|.+ ++ .+|-|
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~--la~~~~~-~~r~~g~hf~~P-~~------~~~lv 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK--LAAATKR-PGRVLGLHFFNP-VP------VLPLV 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCC-CccEEEEecCCC-cc------cCceE
Confidence 99999999999998887765444445 89999998877654443 3344332 222345555553 32 23445
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHHHHHHH--cCCCCCccccCCCCccCC
Q 007040 298 LILPRSADYSEEVWMEIRDKAISVLQTFFF--DGVIPKNAISDTEGCENE 345 (620)
Q Consensus 298 IlTPHiAg~T~ea~~~~~~~a~enL~~~L~--~G~~p~nvVn~~~~y~~~ 345 (620)
=|+||.+.. +++ ++.+..|+. -|+.|..+ +...|+..+
T Consensus 155 Elv~~~~T~-~~~--------~~~~~~~~~~~lgk~pv~v-~d~pGfi~n 194 (286)
T PRK07819 155 ELVPTLVTS-EAT--------VARAEEFASDVLGKQVVRA-QDRSGFVVN 194 (286)
T ss_pred EEeCCCCCC-HHH--------HHHHHHHHHHhCCCCceEe-cCCCChHHH
Confidence 566655443 333 333344432 36666664 555666443
No 67
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.61 E-value=7.1e-08 Score=102.39 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=70.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC-CCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG-KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~-~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
|.|++|||||+|+||.++|+.|+.+|++|+++++... ........|... .++.+++++||+|++++|.... ...+..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 4789999999999999999999999999887655432 222222334443 4688899999999999995533 344556
Q ss_pred HHhhccCCCcEEEEcCCChh
Q 007040 239 ECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v 258 (620)
+....|+++. +|.++-|--
T Consensus 79 ei~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHHhhCCCCc-EEEEeCCcc
Confidence 6777888886 777777643
No 68
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.58 E-value=1e-06 Score=95.56 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=83.6
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 161 RGLVLGIVGR-SASARALATRSLS-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.-.+|+|||+ |.||+.+|+.|+. +|.+|++||+... ...++.+++++||+|++|+|.. .+..+|..
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~ 70 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIR-HTAALIEE 70 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHH
Confidence 4578999999 9999999999995 6999999998421 1236788899999999999955 44455532
Q ss_pred --HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC-CCCCCC--CccccCCCcEEEcCC
Q 007040 239 --ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWM--EAWVREMPNVLILPR 302 (620)
Q Consensus 239 --~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~-E~P~~~--~spL~~~pNVIlTPH 302 (620)
.....++++++++++++-+.--.+++ +.. .. .+. -+|... .+.+++.-++|+||.
T Consensus 71 l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~-~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 71 YVALAGGRAAGQLWLDVTSIKQAPVAAM---LAS-QA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HhhhhcCCCCCeEEEECCCCcHHHHHHH---Hhc-CC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 11234899999999999763222222 111 11 111 135432 246788889999996
No 69
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=4.6e-07 Score=94.38 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=89.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------cCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|++||++........ ..+ +....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 5799999999999999999999999999999864322100 011 23345665 4789
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
||+|+.++|...+.+..+-.+....++++++|+ |++.-.+ .++.+.+.. .-...++-.+. |++ -.+-+
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~-~~r~~g~h~~~-p~~------~~~~v 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDR-PERFIGIHFMN-PVP------VMKLV 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEeeccC-Ccc------cCceE
Confidence 999999999887766654456777889999998 6666443 356666532 12223444444 322 12335
Q ss_pred EEcCCCCCCcHHHHHH
Q 007040 298 LILPRSADYSEEVWME 313 (620)
Q Consensus 298 IlTPHiAg~T~ea~~~ 313 (620)
-+.+|.++ +++..+.
T Consensus 153 ei~~g~~t-~~~~~~~ 167 (292)
T PRK07530 153 ELIRGIAT-DEATFEA 167 (292)
T ss_pred EEeCCCCC-CHHHHHH
Confidence 56776543 4444433
No 70
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=3.1e-07 Score=97.82 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------------------ccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--------------------FPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~--------------------~~~g~~~~~sL~eLL~~sDvV 222 (620)
++|||||.|.||..+|..+...|++|+.||+.+...... ....+....+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 579999999999999999999999999999986422100 001123456898999999999
Q ss_pred EEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
+-++|...+.+.-+-++.-+.++++++| .++.. -+...++.+.+.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcC
Confidence 9999999999998878888999999954 44444 346666777764
No 71
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.55 E-value=7.4e-07 Score=97.44 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=76.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------------cCC-ceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------------PSA-ARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------------------~~g-~~~~~sL~eLL~~sDvV 222 (620)
++|||||+|.||..+|..|...|++|++||++........ ..+ .....++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3699999999999999999999999999999764322100 012 33456788889999999
Q ss_pred EEcccCChh------hHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 223 SLHCAVTDE------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 223 il~lPlT~~------T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
++++|.... ...+. -......+++|.++|+.+.-.+-....+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999996532 11222 23456678999999999875555555665433
No 72
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.53 E-value=1.7e-07 Score=99.89 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=87.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
-+.||++.|.|||..|+.+|.+|++.|++|++....+-..-++..+|... .++++....+|+++.+.- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccC----CcCccCH
Confidence 47999999999999999999999999999999998875555455555554 489999999999998876 6689999
Q ss_pred HHhhccCCCcEEEEcCCChh-hcHHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~v-VDe~AL~~ 266 (620)
++|..||+|+++-|.|.-.+ ||...|.+
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHH
Confidence 99999999999999997666 56666554
No 73
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.52 E-value=9.4e-07 Score=92.00 Aligned_cols=140 Identities=10% Similarity=0.027 Sum_probs=92.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------------------cCCceecCCHHhhhc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------------------PSAARRMDTLNDLLA 217 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-------------------------~~g~~~~~sL~eLL~ 217 (620)
++|+|||.|.||..+|..+...|++|+.||++........ ...+....++++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 4799999999999999999999999999998764221100 012234568888899
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV 297 (620)
.||+|+.++|...+.+.-+-.+....++++++|+..+++- ....+.+.+... -...++-. .+| .+.+|.|
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~-~r~vg~Hf-~~p------~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRP-EKFLALHF-ANE------IWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCc-ccEEEEcC-CCC------CCcCCeE
Confidence 9999999999776655554455667789999885444432 334566665432 22233322 123 3467888
Q ss_pred EEcCCCCCCcHHHHHH
Q 007040 298 LILPRSADYSEEVWME 313 (620)
Q Consensus 298 IlTPHiAg~T~ea~~~ 313 (620)
.+.|+-.. ++++.+.
T Consensus 154 evv~~~~t-~~~~~~~ 168 (287)
T PRK08293 154 EIMGHPGT-DPEVFDT 168 (287)
T ss_pred EEeCCCCC-CHHHHHH
Confidence 89986554 3444333
No 74
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.50 E-value=9.8e-08 Score=104.98 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=69.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC------CCCCCccccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP------EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~------~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
...|.|++|+|||+|.+|.+-|..|+-.|++|++--|. ......+...|. .+.++.++++.||+|++.+|.+
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt- 108 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDK- 108 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChH-
Confidence 35799999999999999997777777777776633332 212121122333 3468999999999999999999
Q ss_pred hhHhhcCHHHhhccCCCcEEEE
Q 007040 231 ETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLIN 252 (620)
. .+.|..+.+..||+|++|.=
T Consensus 109 ~-q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 109 Q-HSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred H-HHHHHHHHHhhCCCCCEEEe
Confidence 3 77778999999999998863
No 75
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.47 E-value=7.7e-07 Score=98.17 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=77.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc----------------eecCCHHhhhcCCcEEEEc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA----------------RRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~----------------~~~~sL~eLL~~sDvVil~ 225 (620)
.++|||||+|.||..+|..|.. |++|++||++....+.. ..|. ....+..+.+++||+|++|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l-~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILEL-KNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHH-HCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 4789999999999999999877 79999999987543311 1111 1222333578999999999
Q ss_pred ccCC------hhhHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 226 CAVT------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 226 lPlT------~~T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+|.. ++...++ .......+++|.++|+.+.-.+-..+.+++.+
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~ 134 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPI 134 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHH
Confidence 9966 3445555 34567889999999999998887777654444
No 76
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=4.2e-07 Score=92.47 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=100.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhh---hcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++||.||+|+||..|+++|...|+.|++||+++...+.....+.....+|+++ |...-+|.+++|..+.|..+|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 46999999999999999999999999999999877665555666666777766 5567999999999988888775 4
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
+-..|.+|-++|+-|-...-|....++.|.+..|. .|||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 66788999999999999999999999999999996 889843
No 77
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.46 E-value=1.7e-07 Score=101.57 Aligned_cols=149 Identities=10% Similarity=0.135 Sum_probs=97.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCc------eecCCHHhhhcCCcEEEEcccCC-hh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAA------RRMDTLNDLLAASDVISLHCAVT-DE 231 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~------~~~~sL~eLL~~sDvVil~lPlT-~~ 231 (620)
+.+.++.|||+|.+|+.+|+.|+++|++|.++|++......... .+. .....+.+.+..+|+|+.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 56788999999999999999999999999999987543221100 011 11235778889999999998653 23
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcE--EEcCCCCCCcH-
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV--LILPRSADYSE- 308 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNV--IlTPHiAg~T~- 308 (620)
+..+|+.+.++.||++++|||++-. ..|.+.+ ..|...+.|.....+| +.-||+.+.-+
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d------------~GG~~e~------~~~t~~d~p~~~~~Gv~~~~v~nlP~~~p~ 306 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAID------------QGGCVET------SRPTTHDQPTYAVHDVVHYCVANMPGAVPK 306 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecC------------CCCCccC------CcCCCCCCCEEEECCeEEEEeCCcccccHH
Confidence 4568999999999999999999731 1122211 1133334455544444 56678777654
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007040 309 EVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 309 ea~~~~~~~a~enL~~~L 326 (620)
++...+.+.+..-|..+.
T Consensus 307 ~aS~~~~~~l~~~l~~~~ 324 (370)
T TIGR00518 307 TSTYALTNATMPYVLELA 324 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 78
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.46 E-value=1.4e-06 Score=91.68 Aligned_cols=134 Identities=21% Similarity=0.213 Sum_probs=84.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (620)
++|+|||+|.||.++|..|...|++|++||++...... ....+ +....++.++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 46999999999999999999999999999998632221 00111 2345688889999
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
||+|+.++|...+....+-.+.-...++..+++ ++... .....+.+.+.... . ...|-+-+|++. .|=|.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~-~-~~~~hp~~p~~~------~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTSA-LLASAFTEHLAGRE-R-CLVAHPINPPYL------IPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCCC-CCHHHHHHhcCCcc-c-EEEEecCCCccc------CceEE
Confidence 999999999876544433333323345555554 33332 34556777764422 2 344444344321 13366
Q ss_pred EcCCCCCC
Q 007040 299 ILPRSADY 306 (620)
Q Consensus 299 lTPHiAg~ 306 (620)
++||-++.
T Consensus 153 iv~~~~t~ 160 (308)
T PRK06129 153 VVPAPWTA 160 (308)
T ss_pred EeCCCCCC
Confidence 88875543
No 79
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.46 E-value=6.8e-07 Score=98.23 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=75.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCCHHhh---------------hcCCcEEEEc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDL---------------LAASDVISLH 225 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~sL~eL---------------L~~sDvVil~ 225 (620)
++|+|||+|.||..+|..|...|++|++||+++...+. ...+.. .-..++++ ++.||+|++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 67999999999999999999999999999998754331 111110 01123333 3479999999
Q ss_pred ccCC------hhhHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 226 CAVT------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 226 lPlT------~~T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+|.. ++...+. -......+++|+++|+.+....-..+.+...|.+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 9964 2222332 2456778999999999999777667777666654
No 80
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.46 E-value=1.3e-07 Score=81.95 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=63.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCC---CEEE-EECCCCCCCCcc-ccCCceecC-CHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 164 VLGIVGRSASARALATRSLSFK---MSVL-YFDVPEGKGKVT-FPSAARRMD-TLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG---~~V~-~~dr~~~~~~~~-~~~g~~~~~-sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
+|||||+|+||.++++.|...| .+|+ ++++++...... ...+..... +..+++..+|+|++++|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8999 548887544322 122333333 7889999999999999944 222333
Q ss_pred HHHhhccCCCcEEEEcCCC
Q 007040 238 AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG 256 (620)
... ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667789999998643
No 81
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.44 E-value=8.1e-07 Score=103.73 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=92.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCccccCCce--ecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||.++|+.++..| .+|++||++..........+.. ...++.+++..+|+|++++|.. .+..++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 67999999999999999999888 5899999987543322223332 3356888899999999999964 4444443
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc---eeEeecCCC--CCCCCccccCCCcEEEcCCCCC
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA---GCALDGAEG--PQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~---GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg 305 (620)
.....++++.++++++..+..-.+++.+.+....+. ++.+-.-+. ....+..|+.-.+++++|+...
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 344567899999999986543344555554332111 111110010 1123446778888899986543
No 82
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.43 E-value=4.3e-07 Score=94.45 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=77.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~----~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|+||.+||+.|...|+ +|+++|++......... .++....+..+++.+||+|++++|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 479999999999999999987774 79999998755432221 3555566788899999999999994 5666666
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
.+....++++.++|.+.-| ++.+.|.+.|
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l 109 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEF 109 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhc
Confidence 3444557889999999887 4555666555
No 83
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.42 E-value=6.1e-07 Score=94.68 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=67.7
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|++|+|||.| .||++||.+|...|++|++|++.. .++.++.++||+|+++++.. +++.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~v~ 217 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RLID 217 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hccc
Confidence 5899999999996 999999999999999999998654 26889999999999999965 4565
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
... +|+|+++||+|--.
T Consensus 218 ~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW---LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh---ccCCcEEEEecccc
Confidence 544 89999999998654
No 84
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.42 E-value=4.9e-07 Score=84.58 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=81.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCccccC-Cc----eecCCHHhhhcCCcEEEEcccCChh-h
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPS-AA----RRMDTLNDLLAASDVISLHCAVTDE-T 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~~-g~----~~~~sL~eLL~~sDvVil~lPlT~~-T 232 (620)
+.+++++|||.|.||..+++.|...| .+|.++|++.......... +. ....++.+++.++|+|++++|.... .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 56789999999999999999999886 7899999986443311111 11 1345777888999999999998753 1
Q ss_pred Hh-hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 233 ~~-lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.. .+.. ..++++.+++|++..+... .|.+.+++..+. .++.
T Consensus 97 ~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~--~v~g 138 (155)
T cd01065 97 DELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK--TIDG 138 (155)
T ss_pred CCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc--eeCC
Confidence 22 2332 2368999999998765433 777777776543 4444
No 85
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.40 E-value=1.6e-06 Score=97.23 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=82.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------------------ccCC-ceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-------------------FPSA-ARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-------------------~~~g-~~~~~sL~eLL~~sDvV 222 (620)
++|||||.|.||.++|..+...|++|++||+++...... ...+ +...+++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 479999999999999999999999999999986442210 0012 34567898999999999
Q ss_pred EEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCC
Q 007040 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ 285 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~ 285 (620)
+.++|...+.+..+-.+.-..++++++|+....| + ....|.+.+.... ...++-+-+|+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg-i-~~s~l~~~~~~~~--r~~~~hP~nP~ 143 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG-F-LPSDLQEGMTHPE--RLFVAHPYNPV 143 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-C-CHHHHHhhcCCcc--eEEEEecCCCc
Confidence 9999998877775444555567888765544444 3 3446666664322 23455443343
No 86
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.38 E-value=9.9e-07 Score=87.83 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=81.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-CceecCCHHhhhc-CCcEEEEcccCChhhHhhc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-AARRMDTLNDLLA-ASDVISLHCAVTDETIQII 236 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-g~~~~~sL~eLL~-~sDvVil~lPlT~~T~~lI 236 (620)
++.|++++|+|+|+||+.+|+.|..+|++|+++|++.......... +.... +.++++. +||+++.|.. .++|
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGVI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cccc
Confidence 5899999999999999999999999999999999886433211111 33333 3456665 7999986665 3589
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+.+.+..|+ ..+++.-+-+.+-| ..-.+.|++..|.
T Consensus 99 ~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 99 NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 999999997 56888888888876 4556677777765
No 87
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.37 E-value=6.8e-07 Score=94.59 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=76.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------CC------ceecCCHHhhhcCCcEEEEccc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SA------ARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------~g------~~~~~sL~eLL~~sDvVil~lP 227 (620)
.++|+|||+|.||..+|..|...|++|.+|+++....+.... .+ +....++.+++..+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 457999999999999999999999999999997543210000 01 3345688888999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCC-hhhc--HHHHHHHHHc
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSS-QLLD--DCAVKQLLID 270 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG-~vVD--e~AL~~AL~~ 270 (620)
... + .+.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 762 2 4556788999999999997 3222 3455555544
No 88
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.37 E-value=3.6e-06 Score=87.81 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=80.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------c----cCC-------------ceecCCHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----------F----PSA-------------ARRMDTLNDL 215 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----------~----~~g-------------~~~~~sL~eL 215 (620)
++|+|||.|.||..+|..+...|++|++||++....+.. . ..+ .....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 579999999999999999999999999999986432210 0 001 1123345 56
Q ss_pred hcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 216 L~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
+++||+|+.++|...+.+.-+-++.-..++++++|+++..| +....+.+.+.. .-...++-.+.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 78999999999988765555444555668999999987777 355666666643 22233444444
No 89
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.35 E-value=4.9e-06 Score=88.30 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=74.7
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCC-----ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 174 ARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr~~~~~~-----~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
|.+||++|...|+.|++||++..... .....|+...++..++++++|+|++|+|..+.+..++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 89999999999999999998764321 1233466777889999999999999999988888888 56889999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHc
Q 007040 249 FLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 249 iLINvgRG~vVDe~AL~~AL~~ 270 (620)
++||++.. +...++..|..
T Consensus 111 IVID~STI---sP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTV---SPVVLYYSLEK 129 (341)
T ss_pred EEEECCCC---CHHHHHHHHHH
Confidence 99999875 44555555544
No 90
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.34 E-value=7.3e-07 Score=93.24 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------------CCceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------------SAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------------~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||+|.||..+|..|...|++|.+|++++...+.... .+.....++++++..+|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 46999999999999999999999999999997532221110 1234456788889999999999996
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+..++. .....+++++++|++..|-
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence 45666663 4556678999999997553
No 91
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.34 E-value=1.2e-06 Score=91.78 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.0
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|.+ |+.+|.+|...|++|++++... .+|.+.+++||+|+.++| +.++|+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~~~ADIVV~avG----~~~~i~ 216 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHTRQADIVVAAVG----KRNVLT 216 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence 589999999999999 9999999999999999976431 368899999999999999 456888
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
. .++|+|+++||+|.-.+
T Consensus 217 ~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 217 A---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred H---HHcCCCCEEEEcccccc
Confidence 7 67899999999997553
No 92
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.33 E-value=5e-06 Score=86.24 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=99.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccC-------------CceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS-------------AARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~-------------g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..+|..+...|++|++||+++..... .... ......+++ .+.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 46999999999999999999999999999987644310 0011 122244565 4789
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
||+|++++|...+.+.-+-.+....++++++|+....| +....|.+.+... -...++--+. |++ -.+-|-
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~-P~~------~~~~ve 152 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN-PVP------VMKLVE 152 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC-Ccc------cCccEE
Confidence 99999999988777755555566779999999554444 4555777777432 2223332222 222 234555
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCcc
Q 007040 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCE 343 (620)
Q Consensus 299 lTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~ 343 (620)
+.|+ .+.+.+..+.+.. -+.. -|+.|..+ +...|+.
T Consensus 153 v~~g-~~t~~e~~~~~~~----l~~~---lGk~pv~~-~d~~g~i 188 (282)
T PRK05808 153 IIRG-LATSDATHEAVEA----LAKK---IGKTPVEV-KNAPGFV 188 (282)
T ss_pred EeCC-CCCCHHHHHHHHH----HHHH---cCCeeEEe-cCccChH
Confidence 7776 3334444443322 2222 36666654 5555554
No 93
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.32 E-value=3.5e-06 Score=94.93 Aligned_cols=116 Identities=20% Similarity=0.231 Sum_probs=85.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccCC-------------ceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSA-------------ARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~sL~eLL~~ 218 (620)
++|||||+|.||..||..+...|+.|+.||++....... ...| +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 579999999999999999999999999999987543321 1122 244567766 569
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceeEeecCCC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL-INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~ 283 (620)
||+|+-++|...+.+..+-.+.-..++++++| +|+|.-.+- +|..++.. .-..+++..|.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~-p~r~~G~hff~P 148 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKH-PERVAGLHFFNP 148 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCC-cccEEEEeecCC
Confidence 99999999999998887766655667899999 599887663 56665542 222346666654
No 94
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.32 E-value=5.4e-07 Score=87.13 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=64.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC-CCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG-KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~-~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
|.+++|+|||||..|.+.|..|+.-|++|++-.+... ....+...|.. +.++.|+.+.||+|++.+|.. ....++..
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDE-VQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence 5799999999999999999999999999998888765 22333334444 458999999999999999944 22345567
Q ss_pred HHhhccCCCcEEEE
Q 007040 239 ECLQHIKPGAFLVN 252 (620)
Q Consensus 239 ~~L~~MK~gAiLIN 252 (620)
+....||+|+.|+=
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 77889999998764
No 95
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.29 E-value=1.2e-06 Score=91.05 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=78.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhh--CCCEEE-EECCCCCCCCccc-cCC-ceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 162 GLVLGIVGRSASARALATRSLS--FKMSVL-YFDVPEGKGKVTF-PSA-ARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka--fG~~V~-~~dr~~~~~~~~~-~~g-~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..+|||||+|.||+.+|+.+.. .+++|. ++|+.+....... ..+ ...+.++++++.++|+|++|+|... ..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHH
Confidence 4689999999999999999985 588876 6788764322111 112 2345789999999999999999652 2222
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
. ...++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 3335667777778899888889999998876543
No 96
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.27 E-value=7e-06 Score=86.14 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=71.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----CC--------------ceecCCHHhhhcCCcEEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SA--------------ARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-----~g--------------~~~~~sL~eLL~~sDvVi 223 (620)
++|+|||.|.||..+|..|...|++|++||++......... .+ .....++.+++.+||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999987643221110 00 123457888899999999
Q ss_pred EcccCChhhH-hhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 224 LHCAVTDETI-QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 224 l~lPlT~~T~-~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
+++|...+.. .++ .+.-..++++++++....| +....|.+.+.
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 9999876543 344 3333446777777544434 23456666664
No 97
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.27 E-value=1.7e-06 Score=89.68 Aligned_cols=104 Identities=10% Similarity=0.133 Sum_probs=74.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCC-Ccc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKG-KVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~-~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
+++|||||+|+||.+||+.|...| .+|++++|+.... ... ...++....+..+++.+||+|++++|.. ....+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHH
Confidence 568999999999999999999887 7899999875321 111 1224555667888999999999999944 34444
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
+ ......++++.++|++.-| +..+.+.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4 3444567889999998655 34555555543
No 98
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.25 E-value=3.1e-06 Score=82.45 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=75.0
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|+++.|||.|.| |..+|+.|...|.+|++.+++. .++.+.+.++|+||.+.+.. ++|.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii~ 102 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLVK 102 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----ceec
Confidence 479999999999996 8889999999999999999863 36888999999999999865 3788
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~G 275 (620)
.+. ++++.++||+|....+| ..+|++.|
T Consensus 103 ~~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 103 GDM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 774 67899999999988777 45566654
No 99
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.23 E-value=4.7e-06 Score=93.86 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=85.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccCC-------------ceecCCHHhhhc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLA 217 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~ 217 (620)
=++|||||.|.||..||..+...|++|+.||+++..... ....| +....++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 356999999999999999999999999999998654321 01111 234567765 46
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP 284 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P 284 (620)
+||+||.++|...+.+..+-.+.-..++++++|. |++.-.+ ..+.+++.. .....++..|.++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pa 147 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPA 147 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcc
Confidence 9999999999998888876566666788888877 7776554 356666643 3445677766643
No 100
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=3.6e-06 Score=88.78 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=66.3
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEEC-CCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFD-VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~d-r~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
++.|++|+||| .|.||++||.+|...|++|++|+ ++. ++.+++++||+|+++++..+ ++
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----hc
Confidence 47999999999 99999999999999999999996 432 47899999999999999753 55
Q ss_pred CHHHhhccCCCcEEEEcCCChh
Q 007040 237 NAECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~v 258 (620)
.+.. +|+|+++||+|--.+
T Consensus 216 ~~~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINRI 234 (296)
T ss_pred chhe---ecCCCEEEEcCCccc
Confidence 5433 899999999986543
No 101
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.19 E-value=3.8e-06 Score=93.56 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=89.3
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----CCceecCCHHhhhcC---CcEEEEcccCChhhHhhcCHHHhhcc
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAECLQHI 244 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~~---sDvVil~lPlT~~T~~lI~~~~L~~M 244 (620)
||+.||++|...|++|.+|||++...+.... .++....++.++++. +|+|++++|..+.+..+| ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999999765443222 135667899998874 899999999999999998 4688999
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 245 K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.+|.++||.|....-|...+.+.+++..+. .+|.
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence 999999999999999999999999988776 5665
No 102
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.17 E-value=2.7e-06 Score=89.02 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
+.||.+.|.|||..|+.-|..|++||.+|++....+-..-.+..+|. .+.+++|+.++.||++.+.- .+.+|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~-~V~tm~ea~~e~difVTtTG----c~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGY-EVTTLEEAIREVDIFVTTTG----CKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhcc-EeeeHHHhhhcCCEEEEccC----CcchhhHH
Confidence 68999999999999999999999999999999877644433333444 44689999999999997664 56899999
Q ss_pred HhhccCCCcEEEEcCCChh
Q 007040 240 CLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~v 258 (620)
+|.+||.++|+.|+|.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999987554
No 103
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.16 E-value=2.8e-06 Score=87.04 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=73.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccc-C-CceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM---SVLYFDVPEGKGKVTFP-S-AARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~-~-g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|+||+++++.|...|. .|.+|+++......... . +.....+..+++.++|+|++++| ......++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 369999999999999999998775 35788987644321111 1 34455688889999999999999 344555553
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
. + .++++.++|.+.-| +..+.|.+.+..
T Consensus 80 ~--l-~~~~~~~vis~~ag--~~~~~l~~~~~~ 107 (258)
T PRK06476 80 A--L-RFRPGQTVISVIAA--TDRAALLEWIGH 107 (258)
T ss_pred H--h-ccCCCCEEEEECCC--CCHHHHHHHhCC
Confidence 2 3 35789999998743 677777777654
No 104
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=6.6e-06 Score=86.32 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=66.3
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|++++|||. |.+|++||.+|...|++|++|.... .++.+.+++||+|+.+++.. +++.
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~~----~~v~ 216 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGRG----HFVT 216 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCcc----ccCC
Confidence 589999999999 9999999999999999999993221 26889999999999999965 4566
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
... +|+|+++||+|--.
T Consensus 217 ~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 217 KEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred HHH---ccCCcEEEEeccee
Confidence 543 89999999998654
No 105
>PRK07680 late competence protein ComER; Validated
Probab=98.14 E-value=3.4e-06 Score=87.14 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=74.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc--CCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP--SAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~----~V~~~dr~~~~~~~~~~--~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
++|||||+|.||..+|+.|...|. .|.+|+|+......... .++....+..+++..+|+|++++|. .....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 369999999999999999998883 79999998643321111 1344456788889999999999983 3355555
Q ss_pred CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
.+....++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3344567889999999855 36666666553
No 106
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.13 E-value=9.2e-06 Score=88.73 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=74.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----------------CCcee--cCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----------------SAARR--MDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~----------------~g~~~--~~sL~eLL~~sDvVil 224 (620)
++|+|||+|.||..+|..+. .|++|++||++......... .+... ..+..+++..||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 36999999999999997665 59999999998643321100 11112 2336677899999999
Q ss_pred cccCCh----------hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 225 HCAVTD----------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 225 ~lPlT~----------~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
++|..- ..+..+ .... .+++|.++|+.|.-.+=-.+.+.+.+.+.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~-~~~~g~lVV~~STv~pgtt~~l~~~~~~~ 134 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVV-EINPYAVMVIKSTVPVGFTAAMHKKYRTE 134 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHH-hcCCCCEEEEeeecCCchHHHHHHHhhcC
Confidence 999651 112222 2333 37999999999998887777888777653
No 107
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.12 E-value=2e-06 Score=86.13 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=95.3
Q ss_pred CCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH--hhCCCEEE
Q 007040 112 TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS--LSFKMSVL 189 (620)
Q Consensus 112 g~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L--kafG~~V~ 189 (620)
+..+...++|.++.++...|++. .|. ...+++|||+|.+|+.+++.+ ...|+++.
T Consensus 57 ~~~G~~~~gy~v~~l~~~~~~~l----------~~~-------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~iv 113 (213)
T PRK05472 57 GEFGKRGVGYNVEELLEFIEKIL----------GLD-------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIV 113 (213)
T ss_pred HhcCCCCCCeeHHHHHHHHHHHh----------CCC-------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEE
Confidence 34445666788888888887653 121 235699999999999999863 36789877
Q ss_pred E-ECCCCCCCCcccc-CCceecCCHHhhhcC--CcEEEEcccCChh---hHhhcCHHHhhccCCCcEEEEcCCChhhcHH
Q 007040 190 Y-FDVPEGKGKVTFP-SAARRMDTLNDLLAA--SDVISLHCAVTDE---TIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262 (620)
Q Consensus 190 ~-~dr~~~~~~~~~~-~g~~~~~sL~eLL~~--sDvVil~lPlT~~---T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~ 262 (620)
+ +|+++........ ..+...+++.+++++ .|+|++++|.+.. ...++......-|....+.+|+.+|.+|+..
T Consensus 114 gv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~ 193 (213)
T PRK05472 114 AAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNV 193 (213)
T ss_pred EEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEe
Confidence 5 5765433221111 112234568888765 9999999998765 3334444455667778999999999999999
Q ss_pred HHHHHHHc
Q 007040 263 AVKQLLID 270 (620)
Q Consensus 263 AL~~AL~~ 270 (620)
+|..+|..
T Consensus 194 ~l~~~l~~ 201 (213)
T PRK05472 194 DLTVELQT 201 (213)
T ss_pred chHHHHHH
Confidence 99998864
No 108
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.11 E-value=1.1e-06 Score=81.99 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=69.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcc---ccC---CceecCCHHhhhcCCcEEEEcccCChh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVT---FPS---AARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~---~~~---g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
.+.|+++.|||.|.+|+.++..|...|++ |++++|+....... +.. .....+++.+.+.++|+|+.+.|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 58999999999999999999999999996 99999986543311 111 123456777889999999999997643
Q ss_pred hHhhcCHHHhhccCCCc-EEEEcCC
Q 007040 232 TIQIINAECLQHIKPGA-FLVNTGS 255 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gA-iLINvgR 255 (620)
+|..+.+....+.. ++++.+.
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-S
T ss_pred ---ccCHHHHHHHHhhhhceecccc
Confidence 77777777665433 6666654
No 109
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.04 E-value=5.8e-06 Score=77.15 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=56.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-...+|||||.|+.|..+++.|...|+.|.++ +++....... ...+.....++++++..+|+|++++|.. . ..-+-
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-a-I~~va 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-A-IAEVA 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-H-HHHHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-H-HHHHH
Confidence 35678999999999999999999999999876 5654322211 1122334457889999999999999977 2 22233
Q ss_pred HHHhhc--cCCCcEEEEcC
Q 007040 238 AECLQH--IKPGAFLVNTG 254 (620)
Q Consensus 238 ~~~L~~--MK~gAiLINvg 254 (620)
+++-.. .++|.+++-|+
T Consensus 86 ~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHHCC--S-TT-EEEES-
T ss_pred HHHHHhccCCCCcEEEECC
Confidence 333333 68999999985
No 110
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.04 E-value=4e-05 Score=86.40 Aligned_cols=180 Identities=12% Similarity=0.127 Sum_probs=106.4
Q ss_pred cceEEEEecCCCCCHHHHhcCCCCeE-EEEecccCCccchHHHHhcCcEEEEcCCCC--h--------HHHHHHHHHH-H
Q 007040 59 AAAAVLLHSLAYLPRAAQRRLRPYQL-ILCLGSSDRTVDSALAADLGLRLIHVDTSR--A--------EEIADTVMAL-L 126 (620)
Q Consensus 59 ~AdaVlv~s~~~l~~e~l~~lp~LK~-I~~~gaG~D~VD~~aa~erGI~VtNtpg~~--a--------~aVAE~aLaL-i 126 (620)
++|+|+--. ..+.+.++.++.=+. |....-..+.=-++.+.+++|.+..-...- + .++|+.+=-. +
T Consensus 64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 567776432 345666777766444 444433333333566788899887733111 1 2233332110 1
Q ss_pred HHHHhccHHHHHHHHHhCCCC-CCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC
Q 007040 127 LGLLRRTHLLARHALSASGWL-GSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA 205 (620)
Q Consensus 127 Lal~Rrl~~~~~~~~~~g~W~-~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g 205 (620)
+..+..+ +.+. +..+.. + .+.+.++.|+|.|.+|...+..++.+|..|+++|++....+.....+
T Consensus 142 i~Aa~~l----------gr~~~g~~taa--g--~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG 207 (511)
T TIGR00561 142 IEAAHEF----------GRFFTGQITAA--G--KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG 207 (511)
T ss_pred HHHHHHh----------hhhcCCceecC--C--CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 1111111 1111 111221 1 35678999999999999999999999999999998864332111111
Q ss_pred cee-----------------cCC----------HHhhhcCCcEEEEcc--cCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 206 ARR-----------------MDT----------LNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 206 ~~~-----------------~~s----------L~eLL~~sDvVil~l--PlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
... .-+ +.+.++.+|+|+.++ |..+ .-.++.++.++.||||+++||++-
T Consensus 208 a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 208 AEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 111 001 456678899999887 3221 225789999999999999999975
No 111
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=1.6e-05 Score=83.57 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=67.9
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|+++.|||.|. +|+.+|..|...|++|++++++. .+|.+.+.+||+|+.+++.. ++|.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p----~~i~ 216 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKP----GLVT 216 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCC----cccC
Confidence 48999999999999 99999999999999999998642 36889999999999999853 5788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ ++|+|+++||+|--.
T Consensus 217 ~~---~vk~gavVIDvGi~~ 233 (286)
T PRK14175 217 KD---VVKEGAVIIDVGNTP 233 (286)
T ss_pred HH---HcCCCcEEEEcCCCc
Confidence 75 468999999999754
No 112
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.98 E-value=9.9e-06 Score=77.33 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=65.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------ccccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+|+|||.|++|.++|..|...|.+|..|.+.....+ ...+.......+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 589999999999999999999999999999852111 112223445678999999999999999954
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
. .+.++ ......++++..+|++.-|=
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence 2 33333 44566678999999998763
No 113
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.93 E-value=2.3e-05 Score=76.83 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=75.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc------------------------cccCCceecCCHHhhhcCC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV------------------------TFPSAARRMDTLNDLLAAS 219 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~------------------------~~~~g~~~~~sL~eLL~~s 219 (620)
+|+|||.|.||..+|..+...|++|..||+++..... ..........+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999998643220 0011223567899888 99
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~ 281 (620)
|+|+=++|..-+.+.-+-++.-+.++++++|...+.+ +....|...+. ..-+..++=.|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEecc
Confidence 9999999999888887777777788899998776554 34445555553 23333444434
No 114
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.93 E-value=2e-05 Score=81.98 Aligned_cols=102 Identities=11% Similarity=0.251 Sum_probs=71.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCC-Ccccc-C-CceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKG-KVTFP-S-AARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~-~~~~~-~-g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
++|+|||+|+||.++|+.|...| .+|++|+++.... ..... . +.....+..+++..+|+|++++|.. ....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence 46999999999999999999877 6899999865221 11011 1 2233457888899999999999932 34444
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+ .+....++++..+|.+.-| +..+.|.+.+
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~ 110 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT 110 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence 4 2333456788899998877 5555776665
No 115
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.92 E-value=1.5e-05 Score=81.60 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=69.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEEEEECCCCCCCCcccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSFK---MSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---~~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+|||+|.||..+|..+...| ..|.+|+++......... .++....+..+++.++|+|++++|.. ....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 47999999999999999999888 789999998644321111 14444567888899999999999843 23334322
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
....+ +.++|.+.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 22223 46788776653 4555655543
No 116
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.91 E-value=2.4e-05 Score=78.66 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=64.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc---CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP---SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~---~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
++++|+|.|+||..+|+++...|++|++-+++.+....... .......+.++..+.+|||++.+|...- .++ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence 57999999999999999999999999999776643221110 1112334678889999999999997632 222 244
Q ss_pred HhhccCCCcEEEEcCC
Q 007040 240 CLQHIKPGAFLVNTGS 255 (620)
Q Consensus 240 ~L~~MK~gAiLINvgR 255 (620)
....+. |.++|++.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 444555 889998865
No 117
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.91 E-value=5e-05 Score=65.43 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=57.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.+++++|+|.|.+|+.++..+..+ +.+|.+||+ |+|+.+.+.. +++.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~----~~~~ 69 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAG----VPVL 69 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCC----CCch
Confidence 36889999999999999999999998 678999988 9999998854 5666
Q ss_pred HHHhhccCCCcEEEEcC
Q 007040 238 AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvg 254 (620)
++.+..|++++++++++
T Consensus 70 ~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 70 EEATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHHhcCCCCEEEecC
Confidence 66788999999999874
No 118
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.82 E-value=2.2e-05 Score=77.45 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=78.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------cccc-------------CCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFP-------------SAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------~~~~-------------~g~~~~~sL~eLL~~sDvV 222 (620)
|+|+|||+|.+|..+|..+...|++|++||.+..... ...+ .......+..+.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 5899999999999999999999999999998753111 0000 1123446778889999999
Q ss_pred EEcccCChhhHh------hc--CHHHhhccCCCcEEEEcCCChhhcHHH-HHHHHHcCCcceeEeecCCCC-----CCCC
Q 007040 223 SLHCAVTDETIQ------II--NAECLQHIKPGAFLVNTGSSQLLDDCA-VKQLLIDGTLAGCALDGAEGP-----QWME 288 (620)
Q Consensus 223 il~lPlT~~T~~------lI--~~~~L~~MK~gAiLINvgRG~vVDe~A-L~~AL~~G~I~GAaLDV~E~P-----~~~~ 288 (620)
++|+|....-.+ +. -......++++.++|.-+.-.+=-.+. +...|++....+.-+++...| -..-
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999984332222 21 234566789999999999977755553 344444333221223332222 1222
Q ss_pred ccccCCCcEEE
Q 007040 289 AWVREMPNVLI 299 (620)
Q Consensus 289 spL~~~pNVIl 299 (620)
..+...|.||+
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 35666777763
No 119
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.81 E-value=1.9e-05 Score=76.26 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=68.5
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccCC-----------------------ceecCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSA-----------------------ARRMDT 211 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~~~g-----------------------~~~~~s 211 (620)
..+...+|.|+|.|+.|+..++.|.++|++|..+|.+...... ..... ......
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 4578899999999999999999999999999999987532110 00000 111235
Q ss_pred HHhhhcCCcEEEEccc-CChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 212 LNDLLAASDVISLHCA-VTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 212 L~eLL~~sDvVil~lP-lT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
|.+.++.+|+|++++- ..+..-.+|..+.++.|||++++|+++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 7888999999996443 455666799999999999999999985
No 120
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.81 E-value=8.5e-05 Score=72.00 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=59.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.||++.|||.+. +|+++|.+|...|+.|..++.+. .++.+.+++||+|+.+++-. ++|.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~----~~i~ 94 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKP----NLIK 94 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSST----T-B-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccc----cccc
Confidence 58999999999995 99999999999999999998654 36889999999999999843 5776
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+ ++|+|+++||+|.-.+
T Consensus 95 ~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 95 AD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp GG---GS-TTEEEEE--CEEE
T ss_pred cc---cccCCcEEEecCCccc
Confidence 54 5799999999988654
No 121
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=9.3e-05 Score=77.82 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=66.6
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|.+|...|++|++++.+. .+|.+.+.+||+|+.+++-. ++|.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p----~~v~ 217 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKP----GFIP 217 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCc----cccc
Confidence 58999999999999 99999999999999999997642 36899999999999999633 4666
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
. ..+|+|+++||+|--.
T Consensus 218 ~---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 218 G---EWIKPGAIVIDVGINR 234 (285)
T ss_pred H---HHcCCCcEEEEccccc
Confidence 5 5678999999999543
No 122
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.77 E-value=6e-05 Score=77.75 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=80.2
Q ss_pred HHHHHhhCC--CEEEEECCCCCCCCccccCCcee-cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 177 LATRSLSFK--MSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 177 vA~~LkafG--~~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
+|+.|+..| .+|++||+++.....+...|+.. ..+-.+.+.++|+|++|+|.. .+..++ .+....+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577788777 79999999886555443444432 122256889999999999954 344444 3455679999999999
Q ss_pred CCChhhcHHHHHHHHHc--CCcceeEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 007040 254 GSSQLLDDCAVKQLLID--GTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (620)
Q Consensus 254 gRG~vVDe~AL~~AL~~--G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiA 304 (620)
+.-+.--.+++.+.+.. ..+.+..+=..|. +......|++--++|++|+-.
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 99877666677776662 2355555544442 334566788889999999876
No 123
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.77 E-value=2.4e-05 Score=86.15 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=68.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc-ccCC--ceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT-FPSA--ARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~-~~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.+.|++++|||.|.||..+++.|..+| .+|++++++....... ...+ .....++.+++..+|+|+.+++.+ ..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~---~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP---HP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC---Cc
Confidence 478999999999999999999999999 6899999986442211 1111 222356778889999999997644 45
Q ss_pred hcCHHHhhccC----CCcEEEEcCC
Q 007040 235 IINAECLQHIK----PGAFLVNTGS 255 (620)
Q Consensus 235 lI~~~~L~~MK----~gAiLINvgR 255 (620)
+|+.+.+..+. ...++||.+-
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 78888777652 2346667654
No 124
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.76 E-value=4.1e-05 Score=79.35 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=70.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCE-EEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMS-VLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~-V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||+.+++.+... +++ +.++|++........ ..+...+.++++++.++|+|++|+|.. ...-+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~~~-- 77 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVEEV-- 77 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHHHH--
Confidence 4799999999999999998865 566 456888764322111 123445678999999999999999843 22111
Q ss_pred HHhhccCCCcEEEEcCCChhhcH---HHHHHHHHcCC
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGT 272 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe---~AL~~AL~~G~ 272 (620)
....++.|.-+|..+-|.+.|. +.|.++.+++.
T Consensus 78 -~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 78 -VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred -HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 2233455666666777777664 35666666654
No 125
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=9.9e-05 Score=77.66 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=66.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.|. +|+.+|.+|...|++|++++... .+|.+...+||+|+.++.-- ++|.
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p----~~i~ 222 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVK----HLIK 222 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCc----cccC
Confidence 58999999999999 99999999999999999998532 36889999999999987643 4776
Q ss_pred HHHhhccCCCcEEEEcCCC
Q 007040 238 AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG 256 (620)
.+ ++|+|+++||+|--
T Consensus 223 ~~---~vk~gavVIDvGin 238 (287)
T PRK14176 223 AD---MVKEGAVIFDVGIT 238 (287)
T ss_pred HH---HcCCCcEEEEeccc
Confidence 65 68899999999864
No 126
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00014 Score=77.49 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=98.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC-CcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA-SDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~-sDvVil~lPlT~~T~~lI~~~ 239 (620)
.-.+|||||+|++|+-+|..+-..|+.|+.+||..-. ..+...|....+.+.+++++ +|+|++|+... .+..++-.-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-saa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilaty 128 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-SAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATY 128 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-HHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhc
Confidence 3467999999999999999999999999999998732 22233455566778888765 89999998743 344455444
Q ss_pred HhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--CCCCCCccccCCCcEEEcCCCCC
Q 007040 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVLILPRSAD 305 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~P~~~~spL~~~pNVIlTPHiAg 305 (620)
=++++|.|++++++-..+...-.++.+-|-+.-- .|-+.. .|...++....+|=|++-=.++.
T Consensus 129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfD---IlctHpmfGPksvnh~wqglpfVydkvRig~ 193 (480)
T KOG2380|consen 129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFD---ILCTHPMFGPKSVNHEWQGLPFVYDKVRIGY 193 (480)
T ss_pred CchhhccceeEeeeeecchhHHHHHHHhCccccc---eEeecCCcCCCcCCCccccCceEEEEeeccc
Confidence 5678999999999999888777777777643211 222222 24445666666777776655543
No 127
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.73 E-value=7.8e-05 Score=78.17 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=68.1
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+ ..|+.+|.+|..+|++|..+..+. .+|.+.+++||+|+.+++.. ++|.
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv~ 210 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFIT 210 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence 5899999999999 999999999999999999988543 36899999999999999744 6888
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
++.+ |||+++||+|-..
T Consensus 211 ~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 211 PDMV---KPGATVIDVGINQ 227 (279)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 8774 9999999998654
No 128
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.69 E-value=9e-05 Score=79.83 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=74.1
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCC-----CccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 174 ARALATRSLSFKMSVLYFDVPEGKG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr~~~~~-----~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
|..||..|...|++|++||++.... ......|+....+..+++.+||+|++++|....+..++. .....+++|+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence 7999999999999999999976421 112234555566888899999999999997665777774 6778899999
Q ss_pred EEEEcCCChhhcH-HHHHHHHH
Q 007040 249 FLVNTGSSQLLDD-CAVKQLLI 269 (620)
Q Consensus 249 iLINvgRG~vVDe-~AL~~AL~ 269 (620)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887665 56666664
No 129
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.00011 Score=77.37 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-| .+|+.+|.+|...|++|++++... .+|.+.+++||+|+.+++.. +++.
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p----~~i~ 215 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKP----DLIK 215 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCC----CcCC
Confidence 5799999999999 999999999999999999985432 35889999999999999743 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+.+ |+|+++||+|-..
T Consensus 216 ~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 216 ASMV---KKGAVVVDIGINR 232 (285)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 7654 8999999999654
No 130
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00013 Score=76.61 Aligned_cols=78 Identities=27% Similarity=0.350 Sum_probs=65.7
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|+++.|||.|. .|+++|..|...|++|+.+++.. .+|.+.+.++|+|+.+++. +. +|.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~-~~---~v~ 217 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGK-PE---LIK 217 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCC-CC---cCC
Confidence 47899999999998 99999999999999999998721 3688888999999999973 22 677
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ .+++|+++||++-..
T Consensus 218 ~~---~lk~gavViDvg~n~ 234 (283)
T PRK14192 218 KD---WIKQGAVVVDAGFHP 234 (283)
T ss_pred HH---HcCCCCEEEEEEEee
Confidence 64 479999999998654
No 131
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.68 E-value=6.2e-05 Score=79.71 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=62.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc-ccCCc--eecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT-FPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~-~~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
+.|++|+|||.|.||+.+++.|+..| .+|++++++....... ...+. ...+++.+.+..+|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 5899999986433211 11122 2224567788899999999996533 222
Q ss_pred cCHHHhhcc-CCCcEEEEcCC
Q 007040 236 INAECLQHI-KPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~M-K~gAiLINvgR 255 (620)
+ ...+... +++.++||++-
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2222222 24566666553
No 132
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.67 E-value=0.00027 Score=79.90 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=105.6
Q ss_pred cceEEEEecCCCCCHHHHhcCCCCe-EEEEecccCCccchHHHHhcCcEEEEcCCCC----h------HHHHHHHHHHHH
Q 007040 59 AAAAVLLHSLAYLPRAAQRRLRPYQ-LILCLGSSDRTVDSALAADLGLRLIHVDTSR----A------EEIADTVMALLL 127 (620)
Q Consensus 59 ~AdaVlv~s~~~l~~e~l~~lp~LK-~I~~~gaG~D~VD~~aa~erGI~VtNtpg~~----a------~aVAE~aLaLiL 127 (620)
++|+|+--. ..+.+.++.++.=+ +|....-..+.=-++.+.++||.+..-...- + .++|+.+=
T Consensus 65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG---- 138 (509)
T PRK09424 65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG---- 138 (509)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence 577777442 34566677776644 4444444344334566788899877622211 1 22222221
Q ss_pred HHHhccHHHHHHHHHhCCCCC-CCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc
Q 007040 128 GLLRRTHLLARHALSASGWLG-SVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA 206 (620)
Q Consensus 128 al~Rrl~~~~~~~~~~g~W~~-~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~ 206 (620)
+|-+..... .-+.... ..+.. ....+.+|.|+|.|.||...+..++.+|.+|+++|+++...+.....|.
T Consensus 139 --y~Av~~aa~---~~~~~~~g~~taa----G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 139 --YRAVIEAAH---EFGRFFTGQITAA----GKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred --HHHHHHHHH---HhcccCCCceecc----CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 111111101 1111111 11111 1356999999999999999999999999999999998754432222232
Q ss_pred ee--cC-----------------C--------HHhhhcCCcEEEEcccCChh-hHhhcCHHHhhccCCCcEEEEcCC
Q 007040 207 RR--MD-----------------T--------LNDLLAASDVISLHCAVTDE-TIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 207 ~~--~~-----------------s--------L~eLL~~sDvVil~lPlT~~-T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
.. .+ + +.+.+..+|+|+.+...... .-.+|.++.++.||||.++|++|=
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 21 00 1 11223569999999865321 223556889999999999999863
No 133
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.66 E-value=6.9e-05 Score=75.20 Aligned_cols=91 Identities=10% Similarity=0.144 Sum_probs=62.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------CCc---eecCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SAA---RRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--------~g~---~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+||| .|+||+.+|..|...|++|.+++++......... .+. ....+..+.+..+|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 9999999999999999999999987643221100 011 122356788899999999999542
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
...++. ..-..++ +.++|++.-|
T Consensus 81 -~~~~l~-~l~~~l~-~~vvI~~~ng 103 (219)
T TIGR01915 81 -VLKTLE-SLRDELS-GKLVISPVVP 103 (219)
T ss_pred -HHHHHH-HHHHhcc-CCEEEEeccC
Confidence 333332 2222344 5899998766
No 134
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.66 E-value=0.00017 Score=74.34 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=64.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.++|||||+|+||.++++.|...| -+|++++++.... +.....+..+++.++|+|++++| ...+..++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~ 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 468999999999999999998766 2599999876432 22334567788889999999988 334555554
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL 268 (620)
+....++++ .+|.+.-| +..+.+.+.+
T Consensus 76 -~i~~~l~~~-~iIS~~aG--i~~~~l~~~~ 102 (260)
T PTZ00431 76 -EIKPYLGSK-LLISICGG--LNLKTLEEMV 102 (260)
T ss_pred -HHHhhccCC-EEEEEeCC--ccHHHHHHHc
Confidence 233345555 44555444 3344444444
No 135
>PLN00203 glutamyl-tRNA reductase
Probab=97.64 E-value=4.5e-05 Score=86.27 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=63.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccC--Cc----eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS--AA----RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~--g~----~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.+++|+|||.|.||+.+++.|...|+ +|++++|+.......... +. ...+++.+++..+|+|+++.|..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~--- 340 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE--- 340 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC---
Confidence 779999999999999999999999997 799999987543311110 11 12356778899999999987644
Q ss_pred HhhcCHHHhhccCC
Q 007040 233 IQIINAECLQHIKP 246 (620)
Q Consensus 233 ~~lI~~~~L~~MK~ 246 (620)
..+|..+.+..|.+
T Consensus 341 ~pvI~~e~l~~~~~ 354 (519)
T PLN00203 341 TPLFLKEHVEALPP 354 (519)
T ss_pred CCeeCHHHHHHhhh
Confidence 45788888887643
No 136
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.64 E-value=0.00011 Score=77.95 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=72.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC-----------------ceecCCHHhhhcCCcEEEEc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-----------------ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g-----------------~~~~~sL~eLL~~sDvVil~ 225 (620)
++|+|||.|.||..+|..|...|++|.+|++.... ......+ .....++ +.+..+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 47999999999999999999999999999986421 1000001 1112344 567899999999
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
+|.. .+..++ ......++++.++|.+.-| +...+.+.+.+...++
T Consensus 81 vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 81 VKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred ecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 9864 445554 3456667899999988654 3344556666655444
No 137
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.61 E-value=0.00016 Score=75.11 Aligned_cols=108 Identities=10% Similarity=0.102 Sum_probs=71.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCC-------------ceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------------ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g-------------~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.||..+|..|...|++|..|++ ....+.....+ .....++.++...+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4699999999999999999999999999998 32211000001 011345666678899999999954
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+..++ ......++++.++|.+.-| +-..+.+.+.+...++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 334443 2334456778888877555 33456666666554544
No 138
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.61 E-value=0.00012 Score=73.83 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=68.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC---CE-EEEECCC-CCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVGRSASARALATRSLSFK---MS-VLYFDVP-EGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG---~~-V~~~dr~-~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
.++|||||.|+||..+|..+...| .+ |++++++ ....... ...++....++++++.++|+|++++|.. ....+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHHH
Confidence 568999999999999999998665 33 7788864 2222211 1124444567889999999999999954 22333
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
+. ..-..++ +.++|.+.=| +..+.|.+.+..
T Consensus 83 ~~-~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~ 113 (245)
T PRK07634 83 LA-ELSPLLS-NQLVVTVAAG--IGPSYLEERLPK 113 (245)
T ss_pred HH-HHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence 32 2222334 6789998766 444456665543
No 139
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.60 E-value=0.00043 Score=65.71 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=66.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|..++.+. .++++.+++||+|+.+++.. ++|.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~i~ 86 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EKVP 86 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----CccC
Confidence 58999999999875 69999999999999999998643 26889999999999999865 5687
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|||+++||++...
T Consensus 87 ~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEW---IKPGATVINCSPTK 103 (140)
T ss_pred HHH---cCCCCEEEEcCCCc
Confidence 654 88999999998654
No 140
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.59 E-value=0.00018 Score=74.46 Aligned_cols=108 Identities=8% Similarity=0.020 Sum_probs=71.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-----------eecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-----------RRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-----------~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
++|+|||.|.||..+|..|...|++|..++++..........+. ....++.++ ..+|+|++++|.. .
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 46999999999999999999999999999986533221111111 123445555 8899999999954 4
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+..++. .....+.+++.+|...-| +-.++.+.+.+....+.
T Consensus 79 ~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 444442 334456778888887776 32345556555554544
No 141
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.58 E-value=8.7e-05 Score=81.88 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=64.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc-ccCC--ceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT-FPSA--ARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~-~~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.+.|++|+|||.|.||+.+++.|...|+ +|++++++....... ...+ .....++.+.+..+|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 899999986442211 1111 222345667788999999998744 33
Q ss_pred hcCHHHhhcc-----CCCcEEEEcC
Q 007040 235 IINAECLQHI-----KPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~M-----K~gAiLINvg 254 (620)
+|..+.++.+ +.+.++||++
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 5666666543 2345555554
No 142
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00037 Score=73.39 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=67.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|+.++... .+|.+.+++||+|+.++... ++|.
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p----~~i~ 216 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKP----KLIT 216 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCC----CcCC
Confidence 58999999999876 69999999999999999986432 36889999999999999744 5888
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+.+ |+|+++||+|.-.+
T Consensus 217 ~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 217 ADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred HHHc---CCCCEEEEeecccc
Confidence 8765 89999999997653
No 143
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.53 E-value=0.00049 Score=68.73 Aligned_cols=91 Identities=23% Similarity=0.195 Sum_probs=66.0
Q ss_pred eeecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCc-cccCCceec--CC----HHhhhcCCcEEEEcccCC
Q 007040 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKV-TFPSAARRM--DT----LNDLLAASDVISLHCAVT 229 (620)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~-~~~~g~~~~--~s----L~eLL~~sDvVil~lPlT 229 (620)
.++.|+++.|||-+. +|+++|.+|...|++|+.+|.+.--... ......... .+ +.+.+++||||+.+++-.
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 468999999999987 5999999999999999999753311100 000000000 12 789999999999999954
Q ss_pred hhhHhh-cCHHHhhccCCCcEEEEcCC
Q 007040 230 DETIQI-INAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~~T~~l-I~~~~L~~MK~gAiLINvgR 255 (620)
++ |..+ ++|+|+++||+|-
T Consensus 138 ----~~~i~~d---~ik~GavVIDVGi 157 (197)
T cd01079 138 ----NYKVPTE---LLKDGAICINFAS 157 (197)
T ss_pred ----CCccCHH---HcCCCcEEEEcCC
Confidence 56 7764 4679999999984
No 144
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.51 E-value=0.00015 Score=76.94 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=63.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCccccC----C--ceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTFPS----A--ARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-~~V~~~dr~~~~~~~~~~~----g--~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
..++|+|||.|.+|+.+++.+.. ++ .+|++|+|++......... + +....++++++.+||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46789999999999999986553 55 5899999987543311111 2 344578999999999998888754
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+|.. +.++||+.+.-++.
T Consensus 201 ~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred CCEecH---HHcCCCCEEEeeCC
Confidence 456665 45789995444443
No 145
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00023 Score=74.32 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=73.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCC-ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----~~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||.|+||++|+.-|..-| .+|++.+|+..... .....++....+..++..++|+|++++.- .. -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q~----~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--QD----L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--Hh----H
Confidence 57999999999999999999888 58999999875543 11223333356778899999999999973 21 1
Q ss_pred HHHhhccC---CCcEEEEcCCChhhcHHHHHHHHH
Q 007040 238 AECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI 269 (620)
Q Consensus 238 ~~~L~~MK---~gAiLINvgRG~vVDe~AL~~AL~ 269 (620)
.+.++.++ ++.++|.+.=| +..+.|.+.|.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 34555565 69999999877 45566666654
No 146
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.0006 Score=71.76 Aligned_cols=78 Identities=19% Similarity=0.372 Sum_probs=66.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+.+|.+|...|++|+.+.... .+|.+.+++||+|+.+++-- ++|.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~----~~i~ 215 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLA----KFVK 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCc----CccC
Confidence 58999999999986 59999999999999999987532 36889999999999999854 5787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 216 KDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred HHH---cCCCCEEEEccCcc
Confidence 654 67999999999655
No 147
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00045 Score=72.59 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=65.9
Q ss_pred eecCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-| .+|+.+|.+|...|++|..+.... .+|.+.+++||+|+.++.-. ++|.
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp----~~i~ 215 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKP----NLIT 215 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcc----cccC
Confidence 5899999999999 889999999999999999886432 36889999999999999743 5787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. .|+|+++||+|--.
T Consensus 216 ~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 216 EDM---VKEGAIVIDIGINR 232 (281)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 654 67999999999543
No 148
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.45 E-value=0.00031 Score=75.45 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=62.3
Q ss_pred EEEEeCChhhHHHHHHHhh-CCCEEEEECCCCCCC----Cc---------------cc-cCCceecCCHHhhhcCCcEEE
Q 007040 165 LGIVGRSASARALATRSLS-FKMSVLYFDVPEGKG----KV---------------TF-PSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~Lka-fG~~V~~~dr~~~~~----~~---------------~~-~~g~~~~~sL~eLL~~sDvVi 223 (620)
|||+|+|+||+.+++.+.. -+++|++++...... .. .+ ..+.....++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999874 478888765422110 00 00 111223456999999999999
Q ss_pred EcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 224 LHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
.|.| .+.++.+++.+..|+++++|+-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECC
Confidence 8865 45779999999999999999864
No 149
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.44 E-value=0.0017 Score=73.05 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=86.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCc-------cccC------------CceecCCHHhhhcCCcE
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKV-------TFPS------------AARRMDTLNDLLAASDV 221 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~~-------~~~~------------g~~~~~sL~eLL~~sDv 221 (620)
++|+|||+|.+|..+|..|... |++|++||.+....+. ..+. ......++.+.+..||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999865 6899999987533221 0000 12233456778899999
Q ss_pred EEEcccCCh-----------hhHhhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCC----
Q 007040 222 ISLHCAVTD-----------ETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP---- 284 (620)
Q Consensus 222 Vil~lPlT~-----------~T~~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P---- 284 (620)
+++|+|... +...+. -...-..+++|.++|.-+.-.+=-.+.+...|.+.. .|.-+.|...|
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 999997322 111222 234556689999999988866666667777776521 12122232222
Q ss_pred -CCCCccccCCCcEEE
Q 007040 285 -QWMEAWVREMPNVLI 299 (620)
Q Consensus 285 -~~~~spL~~~pNVIl 299 (620)
-..-+.++..|.||+
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 222335666677764
No 150
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00054 Score=72.06 Aligned_cols=78 Identities=28% Similarity=0.437 Sum_probs=66.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.+.... .+|.+.+++||+|+.+++-. ++|.
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p----~~i~ 214 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVP----HFIG 214 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 57999999999986 59999999999999999986533 26889999999999999854 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ ++|+|+++||+|--.
T Consensus 215 ~~---~vk~GavVIDvGin~ 231 (282)
T PRK14169 215 AD---AVKPGAVVIDVGISR 231 (282)
T ss_pred HH---HcCCCcEEEEeeccc
Confidence 75 478999999999644
No 151
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.0006 Score=74.27 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=90.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------------------ccccCCc-eecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------------------VTFPSAA-RRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------------------~~~~~g~-~~~~sL~eLL~~sDvV 222 (620)
.+|||||+|-||-++|..+...|++|+|||.+....+ .....|. ....+.. .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 7899999999999999999999999999998864322 0111121 2233444 44599999
Q ss_pred EEcccCChhhH-------hhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC--CcceeEeecCC---C----C
Q 007040 223 SLHCAVTDETI-------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG--TLAGCALDGAE---G----P 284 (620)
Q Consensus 223 il~lPlT~~T~-------~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G--~I~GAaLDV~E---~----P 284 (620)
++|+|. |-+. -+.+ +..-..|++|.++|-=|.-..=..+.++.-|-+. .+. ..-|.+- + |
T Consensus 89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 999993 3222 1222 2345679999999998887777777777776553 343 3456541 1 2
Q ss_pred CCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 285 QWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 285 ~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
-.....+-..|.| +||.++..
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~ 187 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKC 187 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHH
Confidence 2223345556666 46666553
No 152
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00057 Score=72.33 Aligned_cols=115 Identities=23% Similarity=0.245 Sum_probs=82.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.+.... .+|.+.+++||+|+.+++-. ++|.
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp----~~i~ 216 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRP----NLIG 216 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 58999999999986 59999999999999999986532 36889999999999999844 5787
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
.+ ++|+|+++||+|--.+.+.. .+|++. =||-.+. ..+. --.+||--+|.-+-+
T Consensus 217 ~~---~ik~gavVIDvGin~~~~~~------~~gkl~---GDvd~~~------v~~~-a~~iTPVPGGVGp~T 270 (297)
T PRK14186 217 AE---MVKPGAVVVDVGIHRLPSSD------GKTRLC---GDVDFEE------VEPV-AAAITPVPGGVGPMT 270 (297)
T ss_pred HH---HcCCCCEEEEeccccccccc------cCCcee---CCccHHH------HHhh-ceEecCCCCCchHHH
Confidence 65 46799999999976543221 135543 3553110 0011 135999877765543
No 153
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00058 Score=71.84 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=66.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|...|++|+.+..+. .+|.+..++||+|+.++.-. ++|.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp----~~i~ 215 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCV----NLLR 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CccC
Confidence 57999999999986 59999999999999999988543 36899999999999999854 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+ +.|+|+++||+|--.
T Consensus 216 ~~---~vk~GavVIDvGin~ 232 (282)
T PRK14166 216 SD---MVKEGVIVVDVGINR 232 (282)
T ss_pred HH---HcCCCCEEEEecccc
Confidence 75 467999999998543
No 154
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.41 E-value=0.00059 Score=71.80 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=66.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+.+|.+|...|++|+.++... .+|.+..++||+|+.+++-. ++|.
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~----~~i~ 217 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKP----EFIK 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCc----CccC
Confidence 58999999999986 59999999999999999998543 36889999999999999844 6787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 218 ADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred HHH---cCCCCEEEEecCcc
Confidence 654 67999999998643
No 155
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.40 E-value=0.00031 Score=72.81 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=74.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---cc-CCceecCCHHhh-hcCCcEEEEcccCC--hhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FP-SAARRMDTLNDL-LAASDVISLHCAVT--DET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~~-~g~~~~~sL~eL-L~~sDvVil~lPlT--~~T 232 (620)
..+++++|+|.|.+|++++..|...|++|++++|+....... .. .+.....++++. +..+|+|++++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 457889999999999999999999999999999986432211 00 011122234433 35799999999975 211
Q ss_pred Hh-hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeec
Q 007040 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (620)
Q Consensus 233 ~~-lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV 280 (620)
.. .+. +..++++.+++++.-.+... .|.+..++..+. .+|.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~--~vdG 236 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK--TIDG 236 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe--eeCC
Confidence 11 222 34578888899887765432 466666655443 5555
No 156
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.39 E-value=0.00065 Score=71.33 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=66.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|...|++|+.++.+. .+|.+..++||+|+.+++-. ++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp----~~i~ 216 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRP----KFID 216 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CccC
Confidence 58999999999986 59999999999999999998532 36899999999999999854 6788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 217 EEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 755 78999999998544
No 157
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.38 E-value=0.00075 Score=68.66 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=101.5
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCE---EEEECCCC----CCCC------ccc--cCCceec-CCHHhhhcCCcEE
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMS---VLYFDVPE----GKGK------VTF--PSAARRM-DTLNDLLAASDVI 222 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~---V~~~dr~~----~~~~------~~~--~~g~~~~-~sL~eLL~~sDvV 222 (620)
.+.++++.|+|.|.+|+.+|..|...|++ |+.+|++. .... ..+ ..+.... .+|.+.+.++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 36889999999999999999999999984 99999983 2210 001 1100011 2677888899999
Q ss_pred EEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCC
Q 007040 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR 302 (620)
Q Consensus 223 il~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPH 302 (620)
+.+.| .++++.+.++.|.++.+++..+... .+.-+.++.+.|- . ...|...-- ..+..|+++=|=
T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga-~-i~a~G~~~~------~~Q~nn~~~fPg 166 (226)
T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGA-D-IVATGRSDF------PNQVNNVLGFPG 166 (226)
T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCC-c-EEEeCCCCC------ccccceeeecch
Confidence 99987 3688899999999999999888432 3433444433322 1 133332211 126789999997
Q ss_pred CCCCcH-----HHHHHHHHHHHHHHHHHH
Q 007040 303 SADYSE-----EVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 303 iAg~T~-----ea~~~~~~~a~enL~~~L 326 (620)
++-... ..-++|.-.+++.|..+.
T Consensus 167 ~~~g~~~~~~~~i~~~m~~~aa~~la~~~ 195 (226)
T cd05311 167 IFRGALDVRATKITEEMKLAAAEAIADLA 195 (226)
T ss_pred hhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence 553322 234667777777777754
No 158
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.38 E-value=0.00066 Score=71.58 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=65.9
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|..-|++|+.++... .+|.+.+++||+|+.++.-. ++|.
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp----~~i~ 217 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSP----LKLT 217 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCC----CccC
Confidence 47999999999986 59999999999999999887532 36899999999999999844 6888
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---vk~GavVIDvGin~ 234 (288)
T PRK14171 218 AEY---FNPESIVIDVGINR 234 (288)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 654 67999999998543
No 159
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.37 E-value=0.00064 Score=73.15 Aligned_cols=78 Identities=14% Similarity=0.284 Sum_probs=66.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|..+.... .++.+..++||||+.++.-. ++|.
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp----~~v~ 272 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIP----NLVR 272 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 58999999999987 59999999999999999887543 36889999999999999854 6787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 273 ~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 273 GSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred HHH---cCCCCEEEEccccc
Confidence 654 67999999999654
No 160
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.36 E-value=0.00015 Score=75.48 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=52.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc---ccC-C-ceecCCHHhhhcCCcEEEEcccCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT---FPS-A-ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~---~~~-g-~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+.++++.|+|.|.+|++++..|..+| .+|++++|+....... +.. . +....++.+.+..+|+||+++|..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 367899999999999999999999999 6999999986443211 100 0 011113456778899999999976
No 161
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.36 E-value=0.00071 Score=71.31 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=67.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+.+|.+|...|++|+.+..+. .+|.+.+++||+|+.++.-. ++|.
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp----~~i~ 213 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRP----HLIT 213 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCc----CccC
Confidence 58999999999876 69999999999999999887543 36889999999999999844 6887
Q ss_pred HHHhhccCCCcEEEEcCCChh
Q 007040 238 AECLQHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~v 258 (620)
.+. +|+|+++||+|.-.+
T Consensus 214 ~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 214 PEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred HHH---cCCCCEEEEccCccc
Confidence 755 589999999997654
No 162
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.36 E-value=0.00042 Score=74.04 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=66.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-C-CCEEEEECCCCCCCCccc----cCC--ceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLS-F-KMSVLYFDVPEGKGKVTF----PSA--ARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-f-G~~V~~~dr~~~~~~~~~----~~g--~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
-+++||||.|.+|+..++.+.. + .-+|.+||++........ ..+ +..+.+.++++++||+|++|+|.+ .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4679999999999997777653 2 348999999975543111 112 345678999999999999999864 3
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+|..+ .+|||+.++++|.-
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 566654 46999999999853
No 163
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.34 E-value=0.0008 Score=71.30 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=88.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.++... .+|.+.+++||+|+.++.-. ++|.
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk~----~~i~ 225 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQA----MMIK 225 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CccC
Confidence 58999999999986 59999999999999999997542 36889999999999999753 6887
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcC-CcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG-TLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G-~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~ 316 (620)
.+. +|+|+++||+|--.+.+. ...+| + ..=||-.+.. ...--.+||=-+|.-+-+..-+.+
T Consensus 226 ~~~---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v-------~~~a~~iTPVPGGVGp~T~a~L~~ 287 (299)
T PLN02516 226 GDW---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV-------SKVAGWITPVPGGVGPMTVAMLLK 287 (299)
T ss_pred HHH---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh-------hhhceEecCCCCCchHHHHHHHHH
Confidence 654 679999999986442211 11123 3 3446632100 001124899767765544444444
Q ss_pred HHHHHHHHHH
Q 007040 317 KAISVLQTFF 326 (620)
Q Consensus 317 ~a~enL~~~L 326 (620)
.+++..+++|
T Consensus 288 N~v~a~~~~~ 297 (299)
T PLN02516 288 NTVDGAKRVF 297 (299)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 164
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.0008 Score=71.15 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=66.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||.+. +|+++|.+|...|++|+.++... .+|.+.+++||+|+.+++-. ++|.
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp----~~i~ 218 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIP----NFVK 218 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----CccC
Confidence 58999999999986 59999999999999999998643 36889999999999999854 5787
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 219 ~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 219 YSW---IKKGAIVIDVGINS 235 (294)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 655 67999999998644
No 165
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.33 E-value=0.00082 Score=70.70 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=65.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.++... .+|.+.+++||+|+.+++-. ++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp----~~i~ 216 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKP----NFIT 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCc----CcCC
Confidence 58999999999986 59999999999999999997543 36888999999999999854 5787
Q ss_pred HHHhhccCCCcEEEEcCCC
Q 007040 238 AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG 256 (620)
.+ +.|+|+++||+|--
T Consensus 217 ~~---~vk~gavVIDvGin 232 (282)
T PRK14180 217 AD---MVKEGAVVIDVGIN 232 (282)
T ss_pred HH---HcCCCcEEEEeccc
Confidence 64 46799999999853
No 166
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.32 E-value=0.00079 Score=72.83 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=66.7
Q ss_pred eeecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.++.|+++.|||-+. +|+.+|.+|...|++|+.+.... .+|.+.+++||||+.++.-. ++|
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp----~~i 288 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQP----NMV 288 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----CcC
Confidence 368999999999986 59999999999999999986532 36889999999999999844 678
Q ss_pred CHHHhhccCCCcEEEEcCCCh
Q 007040 237 NAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvgRG~ 257 (620)
..+. +|+|+++||+|--.
T Consensus 289 ~~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 289 RGSW---IKPGAVVIDVGINP 306 (364)
T ss_pred CHHH---cCCCCEEEeccccc
Confidence 7654 67999999998644
No 167
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.31 E-value=0.00091 Score=70.52 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=65.5
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+++|.+|... +++|+.+.... .+|.+.+++||+|+.+++-.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p---- 211 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVP---- 211 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----
Confidence 58999999999986 599999999987 78999886532 36899999999999999854
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+. +|+|+++||+|--.
T Consensus 212 ~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CccCHHH---cCCCCEEEEecccc
Confidence 6788754 67999999999654
No 168
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.31 E-value=0.00093 Score=70.27 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=66.0
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
++.|+++.|||-+. +|+++|.+|...|++|+.+..+. .+|.+.+++||+|+.+++- -++|.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 47999999999986 59999999999999999987542 3688999999999999984 35788
Q ss_pred HHHhhccCCCcEEEEcCCCh
Q 007040 238 AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~ 257 (620)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 216 GAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred HHH---cCCCCEEEEeecee
Confidence 654 67999999998654
No 169
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00076 Score=71.41 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=65.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+++|.+|.. .|++|..+..+. .++.+++++||+|+.+++..
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----
Confidence 58999999999986 59999999986 588888887543 35889999999999999644
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+.+ |+|+++||+|-..
T Consensus 218 ~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CccCHHHc---CCCCEEEEeeccc
Confidence 68888776 9999999998544
No 170
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.30 E-value=0.00037 Score=73.52 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
-|.|++|+|||+|+=|.+=|..|+--|.+|++--|.... -..+..+|.. +.+.+|+.+.||+|.+.+|...+ ..++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 489999999999999999999999999998877766543 2233344444 45899999999999999996533 33555
Q ss_pred HHHhhccCCCcEE
Q 007040 238 AECLQHIKPGAFL 250 (620)
Q Consensus 238 ~~~L~~MK~gAiL 250 (620)
.+.-..|+.|+.|
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 5666778888754
No 171
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.30 E-value=0.00071 Score=70.90 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=82.9
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
+++|+++.|||.++| |+.||..|...+++|.++.... .++.+..++||+|+.++-.. ++|.
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p----~~i~ 214 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKP----HFIK 214 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCc----cccc
Confidence 589999999999986 9999999999999999998654 36889999999999999744 6777
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC-CCCCCCCccccCCCcEEEcCCCCCCcHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWM 312 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~-E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~ 312 (620)
+ .+.|+|+++|++|--.+-+ +++. =||- +.- ..-.-.+||=-||.-+-+..
T Consensus 215 ~---d~vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v--------~~~a~~iTPVPGGVGPmTva 266 (283)
T COG0190 215 A---DMVKPGAVVIDVGINRVND----------GKLV---GDVDFDSV--------KEKASAITPVPGGVGPMTVA 266 (283)
T ss_pred c---ccccCCCEEEecCCccccC----------CceE---eeccHHHH--------HHhhcccCCCCCccCHHHHH
Confidence 5 4578999999998754433 5554 3652 211 11123488877776554433
No 172
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.28 E-value=0.0011 Score=72.07 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=68.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCCC---------------CC----ccccCCceecCCHH
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEGK---------------GK----VTFPSAARRMDTLN 213 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-------~~V~~~dr~~~~---------------~~----~~~~~g~~~~~sL~ 213 (620)
+.-++|+|||.|+.|.++|..|...| .+|..|.+.... .. ..++..+....++.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 45568999999999999999998655 788888776531 00 11333455567889
Q ss_pred hhhcCCcEEEEcccCChhhHhhcCHHHhh--ccCCCcEEEEcCCChh
Q 007040 214 DLLAASDVISLHCAVTDETIQIINAECLQ--HIKPGAFLVNTGSSQL 258 (620)
Q Consensus 214 eLL~~sDvVil~lPlT~~T~~lI~~~~L~--~MK~gAiLINvgRG~v 258 (620)
++++.||+|++++|.. ..+.++. ..-. .+++++++|+++-|=-
T Consensus 89 eav~~aDiIvlAVPsq-~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 89 EAVEDADLLIFVIPHQ-FLESVLS-QIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred HHHhcCCEEEEEcChH-HHHHHHH-HhccccccCCCCEEEEEeCCcc
Confidence 9999999999999943 3344432 2223 4677889999876633
No 173
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.23 E-value=0.00088 Score=71.69 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=73.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC----------CC----CccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG----------KG----KVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~----------~~----~~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
++|+|||.|.-|.++|..|...|++|..|.+.+. .. ...++.......+|.+++..||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 5799999999999999999999999999987521 00 122344555677899999999999999994
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHH
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
- ..+.++.. .-..+++++.+|+++-|=-.+...+.
T Consensus 82 ~-~~r~v~~~-l~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 82 Q-ALREVLRQ-LKPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred H-HHHHHHHH-HhhhccCCCeEEEEeccccCCCcchH
Confidence 3 33333322 22467899999999977544444433
No 174
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.23 E-value=0.00094 Score=66.75 Aligned_cols=96 Identities=9% Similarity=0.171 Sum_probs=70.6
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC---CCCCCcc------c---------------cC--Cce---
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP---EGKGKVT------F---------------PS--AAR--- 207 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~---~~~~~~~------~---------------~~--g~~--- 207 (620)
..|..++|+|||.|.+|..+|..|...|. +|+.+|+. ....... . .. .+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 45889999999999999999999999999 79999987 2111100 0 00 000
Q ss_pred ---ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 208 ---RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 208 ---~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
..+++.+++..+|+|+.+ ..+.+++.++.......++...++...|
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 112355678899999999 6888999999888888888777676433
No 175
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.22 E-value=0.001 Score=70.12 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=65.1
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+++|.+|.. .+++|..+..+. .+|.+.+++||+|+.+++. .
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~----p 215 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGR----P 215 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCC----C
Confidence 47999999999986 59999999998 789999887542 3699999999999999963 3
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
++|..+.+ |+|+++||+|--
T Consensus 216 ~li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 216 RFVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CcCCHHHc---CCCCEEEEeeee
Confidence 67887765 999999999853
No 176
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.22 E-value=0.0012 Score=69.79 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=63.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------ccccCCceecCCHHhhh-cCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARRMDTLNDLL-AASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------------~~~~~g~~~~~sL~eLL-~~sDvVil~lP 227 (620)
++|+|||.|.||..+|..|...|.+|..|+|+....+ ...+..+....++.+.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 3699999999999999999999999999999652110 00112233445677766 58999999999
Q ss_pred CChhhHhhcCHHHhh-ccCCCcEEEEcCCCh
Q 007040 228 VTDETIQIINAECLQ-HIKPGAFLVNTGSSQ 257 (620)
Q Consensus 228 lT~~T~~lI~~~~L~-~MK~gAiLINvgRG~ 257 (620)
.. .+..++. .... .+++++.+|.+.-|=
T Consensus 81 s~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQ-QLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HH-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 44 3444443 2233 567777777776663
No 177
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0013 Score=69.17 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=81.2
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhh--CCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhh
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLS--FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka--fG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~l 235 (620)
++.|+++.|||-+. +|+.+|.+|.. .+++|+.+.... .+|.+.+++||+|+.++.-. ++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvGkp----~~ 216 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAGVA----HL 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecCCc----Cc
Confidence 58999999999876 69999999987 799999987542 36899999999999999854 57
Q ss_pred cCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHH
Q 007040 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea 310 (620)
|..+. +|+|+++||+|.-.+ .+|++. =||-+. . .+.. -.+||-=+|.-+-+
T Consensus 217 i~~~~---ik~GavVIDvGin~~----------~~gkl~---GDvd~~--v-----~~~a-~~iTPVPGGVGp~T 267 (284)
T PRK14193 217 VTADM---VKPGAAVLDVGVSRA----------GDGKLV---GDVHPD--V-----WEVA-GAVSPNPGGVGPMT 267 (284)
T ss_pred cCHHH---cCCCCEEEEcccccc----------CCCcEE---eecCHh--H-----HhhC-CEEeCCCCChhHHH
Confidence 88654 679999999997553 245544 355421 0 1111 25899877765543
No 178
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.20 E-value=0.00066 Score=71.90 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=66.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcccc----CCce-ecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTFP----SAAR-RMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~~----~g~~-~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
..++++|||.|.+|+..++.+.. ++. +|.+|+|+......... .+.. .+.+++++++++|+|++++|.+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 56789999999999999999964 665 79999998744331110 1111 14689999999999999999663
Q ss_pred hhcCHHHhhccCCCcEEEEcCCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+|.. .+|||+.++.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 56654 36999999999854
No 179
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00035 Score=73.98 Aligned_cols=147 Identities=11% Similarity=0.172 Sum_probs=96.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---ccccCCce----ecCCHHhhhcCCcEEEEcccCCh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAAR----RMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~---~~~~~g~~----~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
..+...+|.|||.|-+|..-|+++.++|.+|...|.+..... ..+...+. ....+++.+..+|+||-.+=..-
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 346677899999999999999999999999999998853322 11211111 23457889999999998653322
Q ss_pred -hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC--CCCCCCccccCCCcEE--EcCCCCC
Q 007040 231 -ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVL--ILPRSAD 305 (620)
Q Consensus 231 -~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E--~P~~~~spL~~~pNVI--lTPHiAg 305 (620)
..-.++..+++++||||++||+++ ++.|.+ || +|-..+.|-+....|+ +-|.+-|
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA-------------iDqGGc-------~Et~~~TTh~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA-------------IDQGGC-------FETSHPTTHDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE-------------EcCCCc-------eeccccccCCCCceeecCEEEEecCCCCc
Confidence 334577888999999999999984 334443 23 2545556666666654 5555555
Q ss_pred CcH-HHHHHHHHHHHHHHHH
Q 007040 306 YSE-EVWMEIRDKAISVLQT 324 (620)
Q Consensus 306 ~T~-ea~~~~~~~a~enL~~ 324 (620)
..+ .+-..+.+..+.++-.
T Consensus 304 aVprTst~AL~nat~py~l~ 323 (371)
T COG0686 304 AVPRTSTQALTNATLPYILQ 323 (371)
T ss_pred cccchhHHHhhhcchHHHHH
Confidence 432 1223333334444433
No 180
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.16 E-value=0.0016 Score=70.41 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=66.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCC--------CEEEEECCCC-------------C--CCC----ccccCCceecCCHHhhh
Q 007040 164 VLGIVGRSASARALATRSLSFK--------MSVLYFDVPE-------------G--KGK----VTFPSAARRMDTLNDLL 216 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG--------~~V~~~dr~~-------------~--~~~----~~~~~g~~~~~sL~eLL 216 (620)
+|+|||.|+.|.++|..|...| .+|..|.+.. . ... ..++..+....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999998766 9999998721 0 000 01133344557899999
Q ss_pred cCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 217 ~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
..||+|++++|.. ..+.++ ...-..++++.++|+++-|=
T Consensus 81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence 9999999999943 333333 33444678899999998763
No 181
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.15 E-value=0.0017 Score=68.71 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=64.8
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||.+. +|+++|.+|... +++|+.+.... .+|.+.+++||+|+.+++-.
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp---- 215 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQP---- 215 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCc----
Confidence 48999999999986 599999999876 78999886543 36889999999999999854
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+ ++|+|+++||+|--.
T Consensus 216 ~~i~~~---~vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVKAD---MVKEGAVVIDVGTTR 236 (293)
T ss_pred CccCHH---HcCCCCEEEEecCcc
Confidence 578764 478999999999644
No 182
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.13 E-value=0.00099 Score=71.49 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=63.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---------ccc------cCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---------VTF------PSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~---------~~~------~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
++|+|||.|.+|..+|..|...| .|..|.+++...+ ... +.......++.+.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 67999999999999999999988 5777776532110 001 1122345678888999999999999
Q ss_pred CChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 228 VTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
+..++..+. ..-..++++..+|++.-|
T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKG 113 (341)
T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeC
Confidence 334444443 333457888889988776
No 183
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.0064 Score=66.39 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=123.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccC-----CceecCCHHhh---hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~ 234 (620)
..||+||+|-||+.+|......|++|.+|||+....+..... .+....+++|+ |+.---|++++-.......
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 459999999999999999999999999999998655422111 12334466665 6667788888765422233
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHH
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWME 313 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~ 313 (620)
+| ..++..|-+|-++|+-|-..--|...-.++|.+..|...+.=|.-. +-...- |- | +-|.+.++|+.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PS--i---MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PS--I---MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CC--c---CCCCCHHHHHH
Confidence 44 4678899999999999999999999999999999988888777643 221111 22 2 45788899988
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccC--CCCccCCCcchhhhhhhc
Q 007040 314 IRDKAISVLQTFFFDGVIPKNAISD--TEGCENEIDDEIEQYNKL 356 (620)
Q Consensus 314 ~~~~a~enL~~~L~~G~~p~nvVn~--~~~y~~~~~~~~~~~~~~ 356 (620)
+..++.+ |.+- ..|++=-.-|-+ ..-|.+-+-+.-|..|-|
T Consensus 153 v~pil~~-IaAk-~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQ 195 (473)
T COG0362 153 VAPILTK-IAAK-VDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQ 195 (473)
T ss_pred HHHHHHH-HHhh-cCCCCceeeECCCCCCceeeeeecCchHHHHH
Confidence 7765544 4443 256644333332 334555555555554444
No 184
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.11 E-value=0.0024 Score=75.20 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=83.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cc-------------cCCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TF-------------PSAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----------~~-------------~~g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|+.||++...... .. ...+....+++ .++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 57999999999999999999999999999998643210 00 01122345664 4689
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
||+|+=++|...+.+.-+-.+.=..++++++|....++ +....|.+++.. .-..+++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCC
Confidence 99999999999998887777777889999988765554 445556666642 33335555453
No 185
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.10 E-value=0.00052 Score=67.32 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=58.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---c----cCCce-----ecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT---F----PSAAR-----RMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---~----~~g~~-----~~~sL~eLL~~sDvVil~ 225 (620)
.+.++++.|+|. |.+|+.+++.|...|.+|+.++|+....... . ..... ..+++.+.++++|+|+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 368899999995 9999999999999999999999875322110 0 00011 112334677788888888
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
.|....+ .+. .-...+++.+++|+.+..
T Consensus 105 t~~g~~~--~~~--~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 105 GAAGVEL--LEK--LAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCCCcee--chh--hhcccCceeEEEEccCCC
Confidence 8765321 111 111234455666665544
No 186
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=97.08 E-value=5.2e-05 Score=81.39 Aligned_cols=204 Identities=18% Similarity=0.070 Sum_probs=154.6
Q ss_pred HHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCc-EEEEEeCChhhHHHHHHHh--hC-CCEEEEECCCCCCCCc
Q 007040 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGL-VLGIVGRSASARALATRSL--SF-KMSVLYFDVPEGKGKV 200 (620)
Q Consensus 125 LiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~Gk-tVGIIGlG~IG~~vA~~Lk--af-G~~V~~~dr~~~~~~~ 200 (620)
..+.+.+..+.........++|-+...|+ +... |+++. .+..+++|-.+.. +- -|.+.+++-...+.+.
T Consensus 20 ~~~~lngp~h~~p~~aLld~rdc~vemPi------lk~~atvafc-daqstqeIhekvLneavgam~yh~i~l~reDlEk 92 (435)
T KOG0067|consen 20 RPLGLNGPLHPRPLVALLDGRDCGVEMPI------LKDLATVAFC-DAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEK 92 (435)
T ss_pred eecccCCCCCCCcchhhcccccccccchh------hhcchheeee-cccchHHHHHHHHHHhhhcceeeecccchhhHHH
Confidence 44445555544444445678898766554 2222 34443 4566788876543 22 4577788766655543
Q ss_pred cccCCc----eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCccee
Q 007040 201 TFPSAA----RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (620)
Q Consensus 201 ~~~~g~----~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GA 276 (620)
..+..+ ....++.++.+.+|+.|.+|-++..+...++...+.+.+ +.+..|+.-....++.+-.+.+.++.+.++
T Consensus 93 fkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl-~l~rrntw~cq~l~eg~~~q~~~q~~e~a~ 171 (435)
T KOG0067|consen 93 FKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHIL-NLYRRNTWLCQALREGTCTQGLEQVREAAC 171 (435)
T ss_pred hhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHH-hhhcccchhhhhhcccceeechhhhhhhhh
Confidence 333322 235678899999999999999999999999999999998 999999999999999999999999999999
Q ss_pred EeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007040 277 ALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (620)
Q Consensus 277 aLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~ 340 (620)
++|-.+.|.+...+ ..+|+.+-|-.|-+..+.+..+...+.+-|.++|..++.+. +.+..
T Consensus 172 g~~~~~G~~~g~~g--~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVyt--lqd~~ 231 (435)
T KOG0067|consen 172 GLARIRGPTLGLIG--FGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYT--LQDLL 231 (435)
T ss_pred ccccccccceeeec--cccccceehhhhhcccceeeeecchhhhhhhhhcccceecc--cchhh
Confidence 99999988776544 78999999999999999999999999999999996666554 54443
No 187
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.07 E-value=0.0046 Score=65.37 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=72.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc------cCC------ceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF------PSA------ARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~------~~g------~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.++|+|||.|.||..+|..|...|++|.++.+......... ..+ .....+.+ .+..+|+|+++++..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEEecCC
Confidence 36799999999999999999999999999998652110000 011 01112333 457899999999955
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeE
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAa 277 (620)
. +...+ ......+++++++|..--| +-.++.|.+.+-..++.++.
T Consensus 84 ~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 84 A-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred C-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 2 33333 2333446788888887665 34566677777665665543
No 188
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.07 E-value=0.0023 Score=64.09 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=48.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
++++|||- |.||+-++..++..|+.|+ +++||+|++|+|.. .+..++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i~---- 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYIE---- 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHHH----
Confidence 47999988 9999999999999999985 36899999999955 3333332
Q ss_pred hccCCCcEEEEcCCChh
Q 007040 242 QHIKPGAFLVNTGSSQL 258 (620)
Q Consensus 242 ~~MK~gAiLINvgRG~v 258 (620)
.+. .++++++.-+.
T Consensus 50 -~~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 50 -SYD--NNFVEISSVKW 63 (197)
T ss_pred -HhC--CeEEeccccCH
Confidence 232 37999998654
No 189
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.06 E-value=0.0021 Score=75.96 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=83.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------------------------ccCCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT------------------------FPSAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~------------------------~~~g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|+.||++....... ....+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999886432200 001122344565 5689
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
||+|+=++|..-+.+.-+-.+.=..++|+++|....++ ++...|.+.+.. .-..+++-.|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-ccceEEEeccC
Confidence 99999999999998887777777889999988744333 455566666543 33445666664
No 190
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.06 E-value=0.00088 Score=74.03 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=58.3
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccC-C---ceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS-A---ARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~-g---~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+.|+++.|||.|.||+.+|+.|...|. +|++++|+.......... + ....+++.+++.++|+||+|.+.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999996 799999986443311111 1 123356678899999999999854 2
Q ss_pred hhcCHHH
Q 007040 234 QIINAEC 240 (620)
Q Consensus 234 ~lI~~~~ 240 (620)
.+|..+.
T Consensus 255 ~vi~~~~ 261 (414)
T PRK13940 255 YIVTCKY 261 (414)
T ss_pred eeECHHH
Confidence 3455443
No 191
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.05 E-value=0.0024 Score=67.77 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=64.3
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.+.|+++.|||-+. +|+++|.+|... +++|..+.... .+|.+..++||+|+.++.-.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp---- 215 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVP---- 215 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----
Confidence 48999999999986 599999999865 89999886432 36889999999999988744
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+ ++|+|+++||+|--.
T Consensus 216 ~~i~~~---~ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 ELIDGS---MLSEGATVIDVGINR 236 (297)
T ss_pred CccCHH---HcCCCCEEEEccccc
Confidence 578764 478999999999654
No 192
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.03 E-value=0.0013 Score=70.11 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=66.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++++|||.|.+|+..+..+. ..+. +|.+|+|++....... ...+..+.+++++++++|+|+++.|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999887765 4565 7999999875433111 111234678999999999999999966
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
..+|. ..+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 23554 556999999999863
No 193
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.02 E-value=0.0025 Score=67.60 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=64.4
Q ss_pred eecCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++.|+++.|||-+. +|+.+|.+|... +++|+.+.... .+|.+.+++||+|+.++.-.
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp---- 219 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVP---- 219 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCc----
Confidence 58999999999876 699999999876 78999886432 36889999999999999744
Q ss_pred hhcCHHHhhccCCCcEEEEcCCCh
Q 007040 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
++|..+. +|+|+++||+|--.
T Consensus 220 ~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 220 NLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CccCHHH---cCCCCEEEecCCCc
Confidence 5787654 67999999999654
No 194
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.02 E-value=0.0017 Score=69.31 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=66.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++++|||.|.+|+..++.+. .++. +|.+|+|+........ ...+...++++++++.||+|+++.|.+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 3568999999999999999997 4775 7999999875433111 1112335789999999999999998653
Q ss_pred hHhhcCHHHhhccCCCcEEEEcC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.+|..+ .+++|+.++.+|
T Consensus 207 --p~i~~~---~l~~g~~i~~vg 224 (326)
T TIGR02992 207 --PILHAE---WLEPGQHVTAMG 224 (326)
T ss_pred --cEecHH---HcCCCcEEEeeC
Confidence 566654 468999888776
No 195
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.01 E-value=0.0034 Score=73.68 Aligned_cols=116 Identities=10% Similarity=-0.019 Sum_probs=81.9
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc-----------c-------------cCCceecCCHHhhhc
Q 007040 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLA 217 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~ 217 (620)
++|+|||.|.||..+|..+. ..|++|+.||++....... . ...+....+++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 57999999999999999987 5899999999986421100 0 01122345664 578
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
.||+|+=++|...+.+.-+-.+.=..++++++|....++ +....|.+++. ..-..+++--|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~-~p~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAAS-RPENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcC-CcccEEEEecCC
Confidence 999999999999998887777777889999888765544 44455556653 233345665554
No 196
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.99 E-value=0.0049 Score=72.53 Aligned_cols=116 Identities=14% Similarity=0.010 Sum_probs=83.5
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc------------------------ccCCceecCCHHhhhc
Q 007040 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT------------------------FPSAARRMDTLNDLLA 217 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~------------------------~~~g~~~~~sL~eLL~ 217 (620)
++|+|||.|.||..||..+. ..|++|..||++....... ....+....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 67999999999999999988 7899999999975321100 00112234556 4578
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
.||+|+=++|...+.+.-+-++.=+.++|+++|....++ +....|.+.+.. .-..+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 999999999999998887777777889999999866554 455556666542 33445665554
No 197
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.98 E-value=0.0077 Score=64.22 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=81.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----------ccccCC-------------ceecCCHHhhhc
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----------VTFPSA-------------ARRMDTLNDLLA 217 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-----------~~~~~g-------------~~~~~sL~eLL~ 217 (620)
-++|||||.|.||..+|..+..-|+.|..+|++..... .....+ +....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 46899999999999999999997799999999843211 000000 11122333 678
Q ss_pred CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 218 ~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
.||+|+=.+|..-+.++-+=++.=...+|+++|=.-.++ +.-.+|.+++ ...-..+++=.|-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfN 143 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFN 143 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccC
Confidence 999999999999998887767777778999998644333 4455666776 4444445554444
No 198
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.98 E-value=0.00095 Score=74.98 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=51.2
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc---CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP---SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~---~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
..+.+++++|+|.|.||++++..|...|++|++++++......... .......++.+ +..+|+|++|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCC
Confidence 3578999999999999999999999999999999987543221111 01111122322 56899999999975
No 199
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.97 E-value=0.0037 Score=73.58 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=81.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------c-------------cCCceecCCHHhhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLAA 218 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~~ 218 (620)
++|+|||.|.||..||..+...|++|+.||++....... . ...+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 579999999999999999999999999999886432100 0 01122334553 4689
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecC
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~ 281 (620)
||+|+=++|..-+.+.-+-.+.=+.++|+++|-...++ ++..+|...+.. .-..+++=.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFF 452 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecC
Confidence 99999999999998887777777889999998765554 455556666542 3333444334
No 200
>PRK06046 alanine dehydrogenase; Validated
Probab=96.92 E-value=0.002 Score=68.86 Aligned_cols=87 Identities=18% Similarity=0.308 Sum_probs=64.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
-++|||||.|.+|+..++.+.. .+. .|.+||++........ ...+..+.+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4579999999999999998874 455 6888999874433111 111334678999997 99999999965
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+|..+ .+|+|+.+..+|.
T Consensus 205 ~P~~~~~---~l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAE---WIKEGTHINAIGA 224 (326)
T ss_pred CcEecHH---HcCCCCEEEecCC
Confidence 3577665 4589999988884
No 201
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.91 E-value=0.0014 Score=69.77 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=57.6
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCC------ccccCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
+++||||.|..|+.-++.+.. ++. +|.+|+|++...+ ..+...+..+++++++++.||+|+.+.|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 579999999999999998864 566 8999999874333 111223456789999999999999999876433 5
Q ss_pred hcCHHHhhccCCCcEEEEcCCCh
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
+|..+ .++||+.++.+|...
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYT 227 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SS
T ss_pred cccHH---HcCCCcEEEEecCCC
Confidence 77654 678999999998753
No 202
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.88 E-value=0.0025 Score=57.89 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=55.2
Q ss_pred EEEEEe-CChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCccccCC--c--eecCCH--Hhh-hcCCcEEEEcccCChhhH
Q 007040 164 VLGIVG-RSASARALATRSLSF-KMSVLYF-DVPEGKGKVTFPSA--A--RRMDTL--NDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~-dr~~~~~~~~~~~g--~--~~~~sL--~eL-L~~sDvVil~lPlT~~T~ 233 (620)
++|||| .|.+|..++..+... ++++.++ ++...........+ . .....+ +++ ..++|+|++|+|.....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~- 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK- 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH-
Confidence 489999 599999999999874 8887777 43322222111000 1 000111 111 25899999999976433
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+. ..+..+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3222 23456799999999984
No 203
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.88 E-value=0.0029 Score=68.25 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=55.4
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhc
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI 236 (620)
..+.|+++.|||.|.||+-+|+.|...|. +|++.+|+..... +.. ... ..-+++..+||||.+.-.|.....++
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~--~~~--~~~-~~~~~~~~~DvVIs~t~~Tas~~p~i 244 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP--YRT--VVR-EELSFQDPYDVIFFGSSESAYAFPHL 244 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc--hhh--hhh-hhhhcccCCCEEEEcCCcCCCCCcee
Confidence 35899999999999999999999999996 6999999874311 110 000 11145678999998743333334455
Q ss_pred CHHHhhc
Q 007040 237 NAECLQH 243 (620)
Q Consensus 237 ~~~~L~~ 243 (620)
..+.+..
T Consensus 245 ~~~~~~~ 251 (338)
T PRK00676 245 SWESLAD 251 (338)
T ss_pred eHHHHhh
Confidence 6555543
No 204
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.84 E-value=0.001 Score=59.36 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=57.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
.+.|+++.|||.|.+|..-++.|...|.+|+++++.....+... ......+++.+..+|+|+.+.+... ++.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i---~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLI---QLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSC---EEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHH---HHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 58999999999999999999999999999999999841001001 0112345566888999998776432 334
Q ss_pred HHhhccCCCcEEEEcC
Q 007040 239 ECLQHIKPGAFLVNTG 254 (620)
Q Consensus 239 ~~L~~MK~gAiLINvg 254 (620)
......+.--++||+.
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4444555556777764
No 205
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.84 E-value=0.0046 Score=65.64 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=73.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-cc-----------ccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-VT-----------FPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-~~-----------~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.||..+|..+...|. +|+.+|....... .. .........++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 579999999999999999988776 8999998543211 00 0011222356766 78999999999832
Q ss_pred h-----------hhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH--HHcCCcceeE--ee
Q 007040 230 D-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL--LIDGTLAGCA--LD 279 (620)
Q Consensus 230 ~-----------~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A--L~~G~I~GAa--LD 279 (620)
. .+..++- .+.+....|++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 1 1222221 123444568899999987544444445444 4444555554 67
No 206
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.82 E-value=0.0072 Score=64.52 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC--------cc--cc--CCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK--------VT--FP--SAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~--------~~--~~--~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+..++|+|||.|.||..+|..+...| .+|..||.+..... .. .. ..+....+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35678999999999999999998878 69999998763321 00 00 0112234666 779999999999
Q ss_pred --cCChh-hH--------hhc--CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHH--cCCcceeE--ee
Q 007040 227 --AVTDE-TI--------QII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI--DGTLAGCA--LD 279 (620)
Q Consensus 227 --PlT~~-T~--------~lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~--~G~I~GAa--LD 279 (620)
|..+. ++ .++ -.+.+....|.+++||++-..-+-...+.+... ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44431 11 111 113445557899999986544333334444321 24555444 66
No 207
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.82 E-value=0.0019 Score=69.76 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=70.1
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-cCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.+.|++|.|+|. |.||+.+|+.|.. .|. +|+.++|+........ ........++++.+.++|+|+.+.-.. ..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---KG 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---cC
Confidence 578999999998 8999999999974 564 8999998754332111 111122346889999999988766533 23
Q ss_pred -hcCHHHhhccCCCcEEEEcCCChhhcH
Q 007040 235 -IINAECLQHIKPGAFLVNTGSSQLLDD 261 (620)
Q Consensus 235 -lI~~~~L~~MK~gAiLINvgRG~vVDe 261 (620)
+|+.+. ++++.++|++|+..=||.
T Consensus 229 ~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 229 VEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 477764 479999999999876664
No 208
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.80 E-value=0.0019 Score=71.26 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=60.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---cccCCceecCCHHhhhcCCcEEEEcccCChhhHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~---~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~ 234 (620)
+|.++++.|||+|-||.-+|+.|...|. +|++.+|+...... .+...+...+.+.+.+..+|+||.+.... ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~---~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP---HP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC---cc
Confidence 4899999999999999999999999995 89999999755431 12222334567788899999999886533 34
Q ss_pred hcCHHHhh
Q 007040 235 IINAECLQ 242 (620)
Q Consensus 235 lI~~~~L~ 242 (620)
+|..+.+.
T Consensus 252 ii~~~~ve 259 (414)
T COG0373 252 IITREMVE 259 (414)
T ss_pred ccCHHHHH
Confidence 55554443
No 209
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.76 E-value=0.018 Score=58.76 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=67.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC-------CCCc---ccc-CC-------ceecCCHHhh-hcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG-------KGKV---TFP-SA-------ARRMDTLNDL-LAA 218 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~~-------~~~~---~~~-~g-------~~~~~sL~eL-L~~ 218 (620)
++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.... .... ... .+ .... +.+++ -.+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~ 106 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD 106 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence 478999999999999999999999999999955 44210 0000 000 00 1111 22222 236
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
|||++-|.+. +.|+.+....++ -.+++-.+-+++- ....+.|.++.|.
T Consensus 107 ~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAALE-----NQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 7888877653 477777777776 5566666667663 4455777776665
No 210
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.76 E-value=0.0017 Score=68.16 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=52.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccc-------cC-CceecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTF-------PS-AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~-------~~-g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
+.++++.|||.|.+|++++..|...|+ +|+++||+....+... .. ......++.+.+..+|+||++.|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 568899999999999999999999998 8999999864333111 00 1112234556778899999999865
No 211
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.74 E-value=0.0035 Score=65.45 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=67.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---CCEEEE-ECCCCCCCCccccCCceecCCHHhh-hcCCcEEEEcccCChhhHhhcC
Q 007040 163 LVLGIVGRSASARALATRSLSF---KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDL-LAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---G~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eL-L~~sDvVil~lPlT~~T~~lI~ 237 (620)
++|||||+|.||+.+++.+..- ++++.+ |++...... .+...+..+.+++++ ....|+|+=|.... .+-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-----av~ 76 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP-ALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-----AIA 76 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH-HhhccCcccCCHHHHhhcCCCEEEECCCHH-----HHH
Confidence 5799999999999999998753 365544 555542222 222234567789997 57899999888733 221
Q ss_pred HHHhhccCCCcEEEEcCCChhhc---HHHHHHHHHcC
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLD---DCAVKQLLIDG 271 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVD---e~AL~~AL~~G 271 (620)
+--..-++.|.-+|=.|-|.+.| .+.|.++.+.+
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 22233455677777788888887 44556555543
No 212
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.71 E-value=0.0039 Score=66.54 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=66.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc------cCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTF------PSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~------~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
-++++|||.|..|+..++.+.. +.. +|.+|+|++....... ...+..+++.+++++.||||+.+.|.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 4689999999999999988774 333 8999999975543111 112334678999999999999998754 4
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
.+|..+ .+|||+.++.+|.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 677665 5689999999985
No 213
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.68 E-value=0.0051 Score=63.48 Aligned_cols=116 Identities=17% Similarity=0.274 Sum_probs=75.0
Q ss_pred EEEEeC-ChhhHHHHHHHhhCC----CEEEEECCCCCCCC----------ccc-cCCceecCCHHhhhcCCcEEEEcccC
Q 007040 165 LGIVGR-SASARALATRSLSFK----MSVLYFDVPEGKGK----------VTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG----~~V~~~dr~~~~~~----------~~~-~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
|+|||. |.+|..+|..|...| .+|..||....... ... ...+....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 69999998764333 001 11233345678899999999996522
Q ss_pred C-----------hhhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH--HHcCCcceeE-eec
Q 007040 229 T-----------DETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL--LIDGTLAGCA-LDG 280 (620)
Q Consensus 229 T-----------~~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A--L~~G~I~GAa-LDV 280 (620)
. ..+..++- .+.+....|.+++||++-.-=+-...+.+. +...++.|.+ ||.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 1 01222221 234455568999999964332333344444 3456788888 886
No 214
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.60 E-value=0.0035 Score=67.08 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=63.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+....+... ...+....++++++.++|+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 45789999999999999888874 564 8999999865433111 111234578999999999999999865
Q ss_pred hHhhcCHHHhhccCCCcEEEEcC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvg 254 (620)
..+|..+. +++|+.++.++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34666543 57887776654
No 215
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.57 E-value=0.0096 Score=54.51 Aligned_cols=100 Identities=9% Similarity=0.091 Sum_probs=68.0
Q ss_pred cEEEEEe----CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVG----RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIG----lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|+||| -+..|..+.+.|+..|++|+.+++..... .|...+.+|.|.=...|++++++|.. .+..++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHH-
Confidence 5799999 78999999999999999999999877332 35666788998547899999999943 3344443
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+..+..+.+++..| ..++++.+.+++..+.
T Consensus 74 -~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 -EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred -HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 234456788999888 6677788888877665
No 216
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.57 E-value=0.011 Score=61.17 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=47.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+|+|+ |.||+.+++.+... ++++.+ +|+...........++....++++++..+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 788665 7776543321112234455789999989999998886
No 217
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.56 E-value=0.0046 Score=66.32 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=60.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+|||||+|+||+.+++.+... ++++.+ ||++...... ...++....+.++++.+.|+|++|+|.... -...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~-~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~ 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD-TETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh-hcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence 5799999999999999999865 898876 6887422111 112333445677888999999999996522 1334
Q ss_pred hhccCCCcEEEEcC
Q 007040 241 LQHIKPGAFLVNTG 254 (620)
Q Consensus 241 L~~MK~gAiLINvg 254 (620)
...|+.|.-+|++.
T Consensus 78 ~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 78 APYFAQFANTVDSF 91 (324)
T ss_pred HHHHHcCCCEEECC
Confidence 45577777888874
No 218
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.55 E-value=0.044 Score=55.63 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=68.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCC----------CCCCccccC-Ccee-----cCCHHhhh-cCCc
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY-FDVPE----------GKGKVTFPS-AARR-----MDTLNDLL-AASD 220 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~-~dr~~----------~~~~~~~~~-g~~~-----~~sL~eLL-~~sD 220 (620)
++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. ......... +... ..+-++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 47899999999999999999999999996655 55544 100000000 0000 00112232 3689
Q ss_pred EEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 007040 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 221 vVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I 273 (620)
+++-|.+.+ .|+.+....++ -.+++-.+-+++-+ .-.+.|.+..+
T Consensus 100 VlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi 144 (217)
T cd05211 100 IFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI 144 (217)
T ss_pred EEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 999887644 78888778786 55777777777765 33455655544
No 219
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.51 E-value=0.021 Score=59.39 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=92.2
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC-------CC--------------CC--ccccC---CceecCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE-------GK--------------GK--VTFPS---AARRMDT 211 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~-------~~--------------~~--~~~~~---g~~~~~s 211 (620)
++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+. -. .. ..+.. +.... +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 479999999999999999999999999999954 4211 00 00 00100 12222 3
Q ss_pred HHhh-hcCCcEEEEcccCChhhHhhcCHHHhhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCC
Q 007040 212 LNDL-LAASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQW 286 (620)
Q Consensus 212 L~eL-L~~sDvVil~lPlT~~T~~lI~~~~L~~MK--~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~ 286 (620)
.+++ -..|||++-|. +.+.|+.+....++ +-.+++-.+-+++-. +-.+.|.++.|. .+=|+.-+ -..
T Consensus 114 ~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGVi 185 (254)
T cd05313 114 GKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGVA 185 (254)
T ss_pred CcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCee
Confidence 3333 34689998664 66799998888884 456777778888755 345677777665 33344322 000
Q ss_pred CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 287 ~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
. +-+--..| .-|..|.-++...++.+.+.+...+.+
T Consensus 186 v-s~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 186 V-SGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred e-eHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000111 223455556677777766666655544
No 220
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.49 E-value=0.0065 Score=64.46 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=65.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcc-------ccCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
-+++||||.|..|+.-++.+.. +.. +|.+|+|++...... ....+..+.+++++++.||||+.+.|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 4679999999999988888775 444 899999997553311 1112345678999999999999998855
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+|..+ .+|||+.++-+|.
T Consensus 194 ~P~~~~~---~l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRK---YLGDEYHVNLAGS 213 (301)
T ss_pred CcEecHH---HcCCCceEEecCC
Confidence 4677665 4678988777765
No 221
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0049 Score=67.62 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=50.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc----------CCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP----------SAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~----------~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|.|||.|.||+.+|..|.+.| .+|++.||+......... ..+.....+.+++++.|+|+.++|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~ 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence 57999999999999999999998 899999999643331111 11123345778888889999998854
No 222
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.46 E-value=0.0059 Score=66.82 Aligned_cols=93 Identities=17% Similarity=0.368 Sum_probs=69.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CC-C-EEEEECCCCCCCCc-------cccC--CceecCCHHhhhcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLS-FK-M-SVLYFDVPEGKGKV-------TFPS--AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG-~-~V~~~dr~~~~~~~-------~~~~--g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
-+++||||.|..|+..++.+.. +. . +|.+|+|++..... .+.. .+..+++.+++++.||||+.+.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4679999999999999998876 42 4 89999999754331 1111 1445688999999999999999865
Q ss_pred h---hhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 230 D---ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~---~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
. .+..+|..+ .+|||+.++.+|.-+
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCccc
Confidence 3 345677765 567999888777643
No 223
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.41 E-value=0.0029 Score=56.59 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=67.2
Q ss_pred EEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhcC
Q 007040 164 VLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf--G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~ 237 (620)
++||||+|.+|+.....+... +++|. ++|+++...... ...+...+.++++++. +.|+|+++.|.... .-+-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h--~~~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSH--AEIA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGH--HHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcch--HHHH
Confidence 699999999999999888766 56765 678876433311 1234557789999998 78999999996432 2222
Q ss_pred HHHhhccCCCcEEEEc-CCChhhcHHHHHHHHHcCCc
Q 007040 238 AECLQHIKPGAFLVNT-GSSQLLDDCAVKQLLIDGTL 273 (620)
Q Consensus 238 ~~~L~~MK~gAiLINv-gRG~vVDe~AL~~AL~~G~I 273 (620)
...++.=+ .+++.- ---.+-+..+|+++.++...
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 22333222 445443 12244555667766665443
No 224
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.03 Score=60.49 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=111.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCCceecCCHHhh---hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eL---L~~sDvVil~lPlT~~T~~ 234 (620)
..||+||++-||+.++-.....|+.|.+|+|.....+... ...+....+++++ +..--+|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4599999999999999999999999999999876544221 1123334567776 5566788888776655555
Q ss_pred hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCCccccCCCcEEEcCCCCCCcHHHHHH
Q 007040 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWME 313 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~spL~~~pNVIlTPHiAg~T~ea~~~ 313 (620)
+| .++...|-+|-++|+-|-...-|...-.+.|....|...+.-|.-. +-...-| - + +-|.+.++|..
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----S--l---MpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----S--L---MPGGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----c--c---CCCCChHHHHH
Confidence 55 4678889999999999999999999999999888877676666543 2221112 1 1 44778888888
Q ss_pred HHHHHHHHHHHHHHcCC
Q 007040 314 IRDKAISVLQTFFFDGV 330 (620)
Q Consensus 314 ~~~~a~enL~~~L~~G~ 330 (620)
+..++...-.. ..+|+
T Consensus 156 ik~ifq~iaak-v~~~e 171 (487)
T KOG2653|consen 156 IKDIFQKIAAK-VSDGE 171 (487)
T ss_pred HHHHHHHHHHH-hcCCC
Confidence 87766555333 23444
No 225
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.39 E-value=0.012 Score=62.21 Aligned_cols=91 Identities=11% Similarity=0.182 Sum_probs=60.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCcc---c-------cCCc-eecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKVT---F-------PSAA-RRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~~~---~-------~~g~-~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.+|..+|..|...| .+|..+|++....... + .... ....+. +.+..||+|+++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 37999999999999999999888 4899999976543210 0 1111 122334 4578999999998753
Q ss_pred hh-----------hHhhcC--HHHhhccCCCcEEEEcC
Q 007040 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~gAiLINvg 254 (620)
.. +..+|. ...+....|.+++|+++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11 222221 23455567899999987
No 226
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.36 E-value=0.011 Score=61.51 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=63.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCC--CccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKG--KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~--~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||+.+++.+... ++++.+ +++..... ......+...+.+++++-...|+|+.|.|.... . .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4799999999999999999865 565543 33322111 111212345567888885568999999995422 1 1
Q ss_pred HHhhccCCCcEEEEcCCChhhcH---HHHHHHHHcCCc
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGTL 273 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe---~AL~~AL~~G~I 273 (620)
-....++.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 22333445555554555544443 446666655543
No 227
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.35 E-value=0.017 Score=61.68 Aligned_cols=107 Identities=10% Similarity=-0.017 Sum_probs=73.6
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCC------------------cccc-------------CCceecCC--HHhhhcCC
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGK------------------VTFP-------------SAARRMDT--LNDLLAAS 219 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~------------------~~~~-------------~g~~~~~s--L~eLL~~s 219 (620)
||..||..+...|++|..||+++.... .... .......+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 789999999999999999999884210 0000 01112222 55788999
Q ss_pred cEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 220 DvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
|+|+-++|...+.+.-+-.+..+.++|+++|..... .+....|.+.+.. .-...++-.|.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS--~~~~~~la~~~~~-p~r~~g~Hf~~ 140 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTS--TFLVTDLQRHVAH-PERFLNAHWLN 140 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccc--cCCHHHHHhhcCC-cccEEEEecCC
Confidence 999999999999999887778888999999955444 4566666666642 22234444444
No 228
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.33 E-value=0.0065 Score=65.79 Aligned_cols=90 Identities=12% Similarity=0.236 Sum_probs=64.8
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCcc---c---cCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVT---F---PSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afG~-~V~~~dr~~~~~~~~---~---~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
-++++|||.|..|+.-++.+. -+.. +|.+|+|++...... . ...+..++++++++++||||+++.|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 467999999999988887665 4445 899999997543311 0 112344678999999999999999743 222
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
-+|..+ .+|||+.++-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456654 5699998888774
No 229
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.32 E-value=0.0061 Score=61.20 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=56.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-cC-Ccee--cCCHHhhhcCCcEEEEcccCChhhH
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PS-AARR--MDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-~~-g~~~--~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.++.|+++.|||.|.+|..-++.|..+|++|+++++......... .. .+.. -.--.+.+..+|+|+.+....+-
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l-- 82 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL-- 82 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH--
Confidence 468999999999999999999999999999999998754211011 01 1110 00113345677777666443322
Q ss_pred hhcCHHHhhccCCCcEEEEc
Q 007040 234 QIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINv 253 (620)
|.......+.-.++||+
T Consensus 83 ---n~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 83 ---NRRVAHAARARGVPVNV 99 (205)
T ss_pred ---HHHHHHHHHHcCCEEEE
Confidence 23334444444566664
No 230
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.32 E-value=0.0058 Score=62.41 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=66.0
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCC-EEEEECCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCH
Q 007040 163 LVLGIVGRSASARALATRSLS--FKM-SVLYFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fG~-~V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~ 238 (620)
++|||||+|.||+.+.+.++. .++ .|.+||++....... ...+.....+++++++..|+|+=|.... ..+.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-Av~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-AVREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-HHHHH---
Confidence 479999999999999999984 245 588999987554411 1223334578999999999999877532 22222
Q ss_pred HHhhccCCCcEEEEcCCChhhcHHH
Q 007040 239 ECLQHIKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 239 ~~L~~MK~gAiLINvgRG~vVDe~A 263 (620)
..+.++.|.=+|=++-|.+.|+.-
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChHH
Confidence 234456666666677788775543
No 231
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0086 Score=64.46 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=68.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcc-------ccCCceecCCHHhhhcCCcEEEEcccCChhh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~-~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
-.++||||.|..+..-++.++. |+. +|.+|+|++...+.. +...+....+.++++..||+|+.+.|.+.
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4569999999999999999874 555 899999998554411 11124567899999999999999999775
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
-+|..+. ++||+.+..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 5776654 569999999984
No 232
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.31 E-value=0.0083 Score=59.87 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=58.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------------------------ccccCCc----
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------------------------VTFPSAA---- 206 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------------------------~~~~~g~---- 206 (620)
...|.+++|.|||+|.+|..+|+.|...|. ++..+|+..-... ......+
T Consensus 16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 356899999999999999999999999998 8999997631110 0000000
Q ss_pred ----eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccC
Q 007040 207 ----RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (620)
Q Consensus 207 ----~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK 245 (620)
....++++++.++|+|+.++. +.+++.+++.......+
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT 137 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 001234567788888877764 45677777765555433
No 233
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.26 E-value=0.022 Score=52.55 Aligned_cols=103 Identities=20% Similarity=0.162 Sum_probs=60.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhh-CCCEEE-EECCCCCCCC--------ccccCCceecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGR-SASARALATRSLS-FKMSVL-YFDVPEGKGK--------VTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lka-fG~~V~-~~dr~~~~~~--------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
.+|+|+|+ |+||+.+++.+.. -|+++. ++++...... .....++...+++++++..+|+|+-.. +|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 37999999 9999999999997 788855 5566652111 011345556689999999999998776 343
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
...-+-+.. ++.|.-+|-...|---.+.+.++.+..
T Consensus 79 ~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 79 AVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 222211222 233656666556654444444444443
No 234
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.26 E-value=0.0097 Score=54.33 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=51.7
Q ss_pred EEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCCCCCc---ccc--CCc---eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 164 VLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEGKGKV---TFP--SAA---RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lka-fG~~V~~-~dr~~~~~~~---~~~--~g~---~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+||||| .|.+|+.+.++|.. ..+++.. +++....... .++ .+. ...+.-.+.+.++|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 589999 99999999999985 4566544 4444423221 111 001 1111122445899999999995422
Q ss_pred HhhcCHHHhhccCCCcEEEEcCC
Q 007040 233 IQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+. ... +++|..+|+.+.
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSG 98 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSS
T ss_pred HHHH-HHH---hhCCcEEEeCCH
Confidence 2221 212 578889999875
No 235
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.26 E-value=0.052 Score=60.70 Aligned_cols=160 Identities=15% Similarity=0.060 Sum_probs=99.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEE--------ECCCCCCCCc--------------------cccCCceecC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY--------FDVPEGKGKV--------------------TFPSAARRMD 210 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~--------~dr~~~~~~~--------------------~~~~g~~~~~ 210 (620)
++.|++|.|=|+|++|+.+|+.|..+|++|++ ||+..-.... .++ +....
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~~i- 302 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GSTFF- 302 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCEEc-
Confidence 58999999999999999999999999999999 7765432211 111 22222
Q ss_pred CHHhhh-cCCcEEEEcccCChhhHhhcCHHHhhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCC-CC
Q 007040 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QW 286 (620)
Q Consensus 211 sL~eLL-~~sDvVil~lPlT~~T~~lI~~~~L~~MK--~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P-~~ 286 (620)
+-++++ ..|||++-|. +.+.|+.+....+. .-.+++-.+-+ .+..+| .+.|.+..|. .+=|+.-+- -.
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~-~vPD~~aNAGGV 374 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL-FAPGKAVNAGGV 374 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE-EeCcceecCCCe
Confidence 233443 3589888555 67788888877772 24566677777 455444 3666766665 344443220 00
Q ss_pred CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Q 007040 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (620)
Q Consensus 287 ~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~~G~~ 331 (620)
.-+-+--..|. -|..|..++..+++.+.+.+.+.+.+..++.
T Consensus 375 ivs~~E~~qn~---~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~~ 416 (445)
T PRK14030 375 ATSGLEMSQNA---MHLSWSAEEVDEKLHQIMSGIHEQCVKYGKE 416 (445)
T ss_pred eeehhhhhccc---cccCcCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00100011122 4677777888888888888877777655543
No 236
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.25 E-value=0.008 Score=64.80 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=58.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC----------c-----------------cccCCc--
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK----------V-----------------TFPSAA-- 206 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~----------~-----------------~~~~g~-- 206 (620)
...|.+++|.|||.|.+|..+|+.|...|. ++..+|+..-... . .....+
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 467899999999999999999999999998 8888998641100 0 000001
Q ss_pred e------ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 207 R------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 207 ~------~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
. ...++++++.++|+|+.++ .+.+++-+|+.-...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 0 1134567788888888777 566777777765443
No 237
>PLN02477 glutamate dehydrogenase
Probab=96.23 E-value=0.044 Score=60.73 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=89.6
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC-------CCCC------------ccccCCceecCCHHhhhcC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE-------GKGK------------VTFPSAARRMDTLNDLLAA 218 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~-------~~~~------------~~~~~g~~~~~sL~eLL~~ 218 (620)
++.|++|.|.|+|++|+.+|+.|...|++|+++ |.+. -... ..++ +....+.-+-+...
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~-~a~~i~~~e~l~~~ 281 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFP-GGDPIDPDDILVEP 281 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccc-cceEecCccceecc
Confidence 589999999999999999999999999999944 5441 0000 0010 11122222223447
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
|||++-|. ..+.|+.+....++ -.+++-.+-+++ .. +-.+.|.+..|. .+=|+.-+ .-.||
T Consensus 282 ~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~-~~PD~~aN----------aGGVi 342 (410)
T PLN02477 282 CDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV-VLPDIYAN----------SGGVT 342 (410)
T ss_pred ccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE-EEChHHhC----------CCCee
Confidence 88888654 45678888888875 668888888887 33 344777777665 23333221 12222
Q ss_pred EcC--------CCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 299 ILP--------RSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 299 lTP--------HiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
++= |.-|..++...++.+.+.+.+.+.+
T Consensus 343 vs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~ 378 (410)
T PLN02477 343 VSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALK 378 (410)
T ss_pred eeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 221 2334445566666656666666554
No 238
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.22 E-value=0.019 Score=60.43 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=61.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc--------cccCC----ceecCCHHhhhcCCcEEEEccc--
Q 007040 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV--------TFPSA----ARRMDTLNDLLAASDVISLHCA-- 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~--------~~~~g----~~~~~sL~eLL~~sDvVil~lP-- 227 (620)
++|+|||.|.+|..+|..+...|. +|..+|+....... ....+ +....+.+ .+..||+|+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECCCCC
Confidence 579999999999999999987665 99999986543220 00000 11123454 5789999999863
Q ss_pred CCh---------hhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHH
Q 007040 228 VTD---------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (620)
Q Consensus 228 lT~---------~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~ 266 (620)
..+ .+..++. .+.+....|.+++|+++-.-=+-...+.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~ 131 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALK 131 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH
Confidence 211 1222221 12233344678888886443333333333
No 239
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.012 Score=64.81 Aligned_cols=109 Identities=10% Similarity=0.052 Sum_probs=65.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH--------
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI-------- 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~-------- 233 (620)
.++|.|||+|.+|.++|+.|+..|++|.++|++..................+.+..++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 367999999999999999999999999999987643221000000011233344577999888876553211
Q ss_pred --hhcCHHHh--hc--cCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 234 --QIINAECL--QH--IKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 234 --~lI~~~~L--~~--MK~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.++....+ .. +.+ -.|=|--+-|+.--..=|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 12222222 11 212 234444455777777777777764
No 240
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.19 E-value=0.0067 Score=63.60 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=50.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc---C--Cceec---CCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP---S--AARRM---DTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~---~--g~~~~---~sL~eLL~~sDvVil~lPlT 229 (620)
+.|+++.|||.|.+|++++..|...|+ +|++++|+......... . .+... +++.+.+.++|+||.++|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 578899999999999999999999998 79999998643331110 0 01111 23345667899999999875
No 241
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.17 E-value=0.0066 Score=54.46 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=56.0
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCccc---cCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC-HHHhhccCCCc
Q 007040 173 SARALATRSLSFKMSVLYFDVPEGKGKVTF---PSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-AECLQHIKPGA 248 (620)
Q Consensus 173 IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~-~~~L~~MK~gA 248 (620)
-+..|++.|+..|++|.+|||......... ..+....+++++.++.+|+|+++.+.. +-.. ++ .+....|+++.
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~-l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRE-LDWEEIAKLMRKPP 95 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGC-CGHHHHHHHSCSSE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhc-cCHHHHHHhcCCCC
Confidence 468899999999999999999975443211 134556678999999999999999865 2222 44 34556788899
Q ss_pred EEEEc
Q 007040 249 FLVNT 253 (620)
Q Consensus 249 iLINv 253 (620)
+||++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99987
No 242
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.14 E-value=0.022 Score=60.84 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=61.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccCCce-ecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAAR-RMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~~g~~-~~~sL~eLL~~sDvVil~lPl 228 (620)
++++|+|||.|.+|..+|-.|...|. ++..||.+..... ..+..... ...+. +.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 57899999999999999999998888 8999998764322 00101112 22334 557999999997643
Q ss_pred Ch---hhH--------hhcC--HHHhhccCCCcEEEEcCC
Q 007040 229 TD---ETI--------QIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~---~T~--------~lI~--~~~L~~MK~gAiLINvgR 255 (620)
.. .++ .++. ...+..-.|.+++|+++-
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 122 2221 123333457899999873
No 243
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.13 E-value=0.0048 Score=57.56 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=71.0
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc--------------eecCCHHhhhcCCcEEEEcccCCh
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--------------RRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~--------------~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
|+|+|.|.||.-+|..|+..|++|..+.+.. ..+.....+. .......+.....|+|++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 6899999999999999999999999999877 2110000011 01111224567899999999754
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
++...+.. .-..+.+++.+|-.--| +-.++.|.+.+-...+.++..
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 44555544 55566777777776655 444566666664556654443
No 244
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.13 E-value=0.037 Score=59.25 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=67.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------cc-cc--CCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------VT-FP--SAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---------~~-~~--~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+..++|+|||.|.||..+|..+...|. .|+.+|.++.... .. .. ..+....++ +.++.||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999987785 8999998775321 00 00 112223466 4678999999976
Q ss_pred cCC----------------hhhHhhcC--HHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 227 AVT----------------DETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 227 PlT----------------~~T~~lI~--~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
-.. .++..++. .+.+....|.+++||++-..-+-...+.+.
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~ 141 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEH 141 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHh
Confidence 221 11222221 123445567889999985443334444433
No 245
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.09 E-value=0.02 Score=62.79 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=79.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------ccccC------------C-ceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFPS------------A-ARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-------~~~~~------------g-~~~~~sL~eLL~~sDvV 222 (620)
++|.|||.|-.|-..|..+..+|++|+++|..+...+ +.++. + .....+..+.++.+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5799999999999999999999999999998753221 11111 1 23456788899999999
Q ss_pred EEcccCChhhHhhc--------CHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 223 SLHCAVTDETIQII--------NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 223 il~lPlT~~T~~lI--------~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
++++|..+.-.+-+ -++....++..+++|+=|.-.+=-.+.+.+.+....
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 99999665433333 234666777779999999877766666666555443
No 246
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.013 Score=63.71 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=49.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-----cCCHHhhhcCCcEEEE
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLAASDVISL 224 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~~sDvVil 224 (620)
+++|||||-|-.|+-|+.....+|++|++.|+.+............. ...+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 47899999999999999999999999999999876544222222211 2358899999999986
No 247
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.99 E-value=0.0092 Score=64.40 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=35.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK 199 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~ 199 (620)
.|++|+|+|+|..|-...+.++++|++|+++|++..+.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e 204 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLE 204 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHH
Confidence 489999999999999999999999999999999886543
No 248
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.97 E-value=0.073 Score=59.60 Aligned_cols=109 Identities=7% Similarity=0.016 Sum_probs=71.7
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC-------CCC-------------ccccC--CceecCCHHh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG-------KGK-------------VTFPS--AARRMDTLND 214 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~-dr~~~-------~~~-------------~~~~~--g~~~~~sL~e 214 (620)
.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+.. ... ..++. +... .+.++
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~ 306 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGS 306 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCcc
Confidence 3589999999999999999999999999999988 53210 000 00110 1111 23344
Q ss_pred hhc-CCcEEEEcccCChhhHhhcCHHHhhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 215 LLA-ASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 215 LL~-~sDvVil~lPlT~~T~~lI~~~~L~~MK--~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
++. +|||++-|.. .+.|+.+....++ .-.+++-.+-+++ . .+-.+.|.++.|.
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t-~~A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-T-PEAIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-C-HHHHHHHHHCCcE
Confidence 444 6899997664 4577777666663 3457777788887 3 3345677777665
No 249
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.97 E-value=0.035 Score=61.84 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=70.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----ccccCCceec--CCHHhhhcCCcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRM--DTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-----~~~~~g~~~~--~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.+++|+|+|+|..|.++|+.|+..|+.|.++|....... .....|+... ....+.+..+|+|++. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 5688999999999999999999999999999998653221 1111233221 2223556789999887 544332
Q ss_pred Hhh-----------cCH-HHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 233 IQI-----------INA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 233 ~~l-----------I~~-~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
..+ ++. +.+.. .+...+-|--+.|+.--..-|...|...
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 222 221 22222 2333455555678888877777888743
No 250
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.94 E-value=0.031 Score=53.86 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=67.0
Q ss_pred cCcEEEEEe--CChhhHHHHHHHhhCCCEEEEECCCCCC--CCc-cc----------cCCceecCCHHhhhcCCcEEEEc
Q 007040 161 RGLVLGIVG--RSASARALATRSLSFKMSVLYFDVPEGK--GKV-TF----------PSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 161 ~GktVGIIG--lG~IG~~vA~~LkafG~~V~~~dr~~~~--~~~-~~----------~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
.|++|++|| .+++..+++..+..||++|.++.|..-. ... .. ...+....++++.++.+|||..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 388999999 3899999999999999999999987622 210 00 11234568999999999999876
Q ss_pred ccC----Chh------hH-hhcCHHHhhccCCCcEEEEcC
Q 007040 226 CAV----TDE------TI-QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPl----T~~------T~-~lI~~~~L~~MK~gAiLINvg 254 (620)
.-. .+. .. -.|+.+.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 654 111 11 346888888888888888764
No 251
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.82 E-value=0.016 Score=58.68 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=62.8
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---c--c-----c----------------c-CCce--
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---V--T-----F----------------P-SAAR-- 207 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~--~-----~----------------~-~g~~-- 207 (620)
..|..++|.|||+|.+|..+|+.|...|+ +++.+|...-... . . . + ..+.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 56899999999999999999999999999 7888876531111 0 0 0 0 0000
Q ss_pred --e--cCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 208 --R--MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 208 --~--~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
. ..++.+++..+|+|+.|+. +.+++.+++...... +.-+|.++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 1 1234567888999888876 567777777655443 45566654
No 252
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.80 E-value=0.021 Score=60.19 Aligned_cols=91 Identities=20% Similarity=0.338 Sum_probs=56.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc---ccC--CceecCCHHhhhcCCcEEEEcccCC--
Q 007040 165 LGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT---FPS--AARRMDTLNDLLAASDVISLHCAVT-- 229 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-------~~---~~~--g~~~~~sL~eLL~~sDvVil~lPlT-- 229 (620)
|+|||.|.||..+|..+...|. +|+.+|++..... .. ... .+....+.+ .++.||+|+++....
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999999986665 9999998764221 00 000 111224454 578999999977421
Q ss_pred ---------hhhHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 230 ---------DETIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 ---------~~T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
+++..++- ...+....|.+++|+++-.
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 11222221 1234445577888887743
No 253
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.78 E-value=0.063 Score=56.81 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=73.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH---h---
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI---Q--- 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~---~--- 234 (620)
.|++++|||--.=-..+++.|.+.|++|+.+.-....- ...|+....+.++++.++|+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 37889999999989999999999999998754322110 12355556678899999999999999764321 1
Q ss_pred ----hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 235 ----IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 235 ----lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
-++.+.++.|++|.+++ +|.+.-- +-+.+.+..|.
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~ 116 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK 116 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence 13578999999998444 4443221 33445566665
No 254
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.77 E-value=0.055 Score=55.95 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=61.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~ 242 (620)
-++-|+|.|.+++++|+.++.+|++|+++|+++..... ..+..++.+....| .+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~~----------~~~~~ 157 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDEP----------EAEVA 157 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCCH----------HHHHh
Confidence 35899999999999999999999999999977631110 11123443332222 12223
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 243 ~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.+.+...+|=+.++.-.|..+|..+|......
T Consensus 158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 158 EAPPGSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 35567778888899999999999999654443
No 255
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.76 E-value=0.023 Score=54.72 Aligned_cols=38 Identities=16% Similarity=-0.048 Sum_probs=35.2
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+|.|++|.|||-|.+|...++.|...|++|.++++..
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 57999999999999999999999999999999998654
No 256
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.76 E-value=0.022 Score=59.86 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~ 195 (620)
+.|+++.|+|.|.+|+++|..|...|++ |++++|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5788999999999999999999999995 99999975
No 257
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.76 E-value=0.038 Score=59.76 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=62.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcc---cc--CCc--eec--CCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVT---FP--SAA--RRM--DTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~---~~--~g~--~~~--~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||. |.+|+.+++.|..+ ++++.. +++........ ++ .+. ... .+.++++..+|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 778884 46544222211 11 010 012 24566667899999999955
Q ss_pred hhHhhcCHHHhhc-cCCCcEEEEcCCChhhcHHHHHHH
Q 007040 231 ETIQIINAECLQH-IKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 231 ~T~~lI~~~~L~~-MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
.. .+.... .+.|..+|+.+-.-=.+..++++.
T Consensus 80 ~s-----~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~ 112 (346)
T TIGR01850 80 VS-----AELAPELLAAGVKVIDLSADFRLKDPEVYEK 112 (346)
T ss_pred HH-----HHHHHHHHhCCCEEEeCChhhhcCChhhhHH
Confidence 22 222222 256899999986555554444443
No 258
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.59 E-value=0.044 Score=58.20 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=59.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCc---cccCC-------ceecCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKV---TFPSA-------ARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~~---~~~~g-------~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||.|.+|..+|..|...| .+|..+|++...... ..... .....+. +.++.||+|+++.+...
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCCC
Confidence 46999999999999999999888 589999987632220 01000 1112344 45789999999998632
Q ss_pred h-----------hHhhcC--HHHhhccCCCcEEEEcC
Q 007040 231 E-----------TIQIIN--AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~gAiLINvg 254 (620)
. +..++. .+.+....+.+++++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 112221 12344455778888875
No 259
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.58 E-value=0.1 Score=58.40 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC------C------------------ccccC--CceecCCH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG------K------------------VTFPS--AARRMDTL 212 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~------~------------------~~~~~--g~~~~~sL 212 (620)
+|.|++|.|.|+|++|...|+.|..+|++|++++...... . ..+.. +... .+.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~ 303 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEG 303 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCC
Confidence 6899999999999999999999999999999854421100 0 00000 1111 133
Q ss_pred Hhhh-cCCcEEEEcccCChhhHhhcCHHHhhccCC-Cc-EEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCCCC
Q 007040 213 NDLL-AASDVISLHCAVTDETIQIINAECLQHIKP-GA-FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWME 288 (620)
Q Consensus 213 ~eLL-~~sDvVil~lPlT~~T~~lI~~~~L~~MK~-gA-iLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~~~ 288 (620)
++++ ..|||++-|. +.+.|+.+....++. |. +++-.+-+ .+..++. +.|.+..|. .+=|+.-+ --..-
T Consensus 304 d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~-~~PD~~aNAGGViv 375 (444)
T PRK14031 304 ARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL-YAPGKAANAGGVSV 375 (444)
T ss_pred cccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE-EeChhhccCCCeee
Confidence 3442 3588888444 567899888888864 44 45555566 5555554 444544443 23333221 00000
Q ss_pred ccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007040 289 AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (620)
Q Consensus 289 spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L~ 327 (620)
+-+--..| .-+..|..++..+++.+.+.+...+.+.
T Consensus 376 s~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v~~ 411 (444)
T PRK14031 376 SGLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEACVQ 411 (444)
T ss_pred ehhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122 2345566677777777777777666553
No 260
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.52 E-value=0.025 Score=62.74 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=47.0
Q ss_pred cEEEEEeCChhhHHHHH---HH---hhCCCEEEEECCCCCCCCc------------cccCCceecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALAT---RS---LSFKMSVLYFDVPEGKGKV------------TFPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~---~L---kafG~~V~~~dr~~~~~~~------------~~~~g~~~~~sL~eLL~~sDvVil 224 (620)
.+|+|||.|.+|...+- .+ ...|.+|..||+.+..... .....+....++.+.+..||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 36999999999998665 32 3346799999998643220 011123345688899999999999
Q ss_pred cccC
Q 007040 225 HCAV 228 (620)
Q Consensus 225 ~lPl 228 (620)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9994
No 261
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.47 E-value=0.28 Score=49.13 Aligned_cols=72 Identities=10% Similarity=-0.021 Sum_probs=49.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCC-cee-cCC-HHhhhcCCcEEEEcccCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSA-ARR-MDT-LNDLLAASDVISLHCAVT 229 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g-~~~-~~s-L~eLL~~sDvVil~lPlT 229 (620)
.++.|+++.|||.|.+|...|+.|...|++|+++++...... .....+ +.. ... ..+.+..+|+|+.++...
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 578999999999999999999999999999999997643211 111111 111 111 134467788877776644
No 262
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.46 E-value=0.061 Score=57.43 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=59.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------c-cccC-CceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------V-TFPS-AARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~-~~~~-g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
.+|+|||.|.+|..+|-.|...|. ++..||.+..... . .... .+....+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999999876665 8999998764222 1 1111 1222245654 79999999965431
Q ss_pred --h-hhHh-hc--C-------HHHhhccCCCcEEEEcCC
Q 007040 230 --D-ETIQ-II--N-------AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 --~-~T~~-lI--~-------~~~L~~MK~gAiLINvgR 255 (620)
+ .|+- ++ | .+.+....|.+++|+++-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 1 2331 22 1 134455678999999984
No 263
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.012 Score=59.81 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=50.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CCc-------eecCCHHhh-hcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA-------RRMDTLNDL-LAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g~-------~~~~sL~eL-L~~sDvVil~lPlT~~ 231 (620)
+++.|||+|..|..+|+.|...|+.|+..|........... ... ...+.|.++ +.++|+++.+......
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 57899999999999999999999999999998754332111 111 122346666 7889999998886543
No 264
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.46 E-value=0.024 Score=62.16 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=67.2
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc---cc----CCceecCCHHh-hhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKVT---FP----SAARRMDTLND-LLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~---~~----~g~~~~~sL~e-LL~~sDvVil~lPlT 229 (620)
...++|+|||. |.+|+.+.+.|... +++|..+.+........ .. .......+++. .++.+|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999987 78988887654333210 10 00111222332 257899999999964
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHH
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~A 267 (620)
.. .+....|+.|..+|+.+..-..+..+.++.
T Consensus 116 -~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~ 147 (381)
T PLN02968 116 -TT-----QEIIKALPKDLKIVDLSADFRLRDIAEYEE 147 (381)
T ss_pred -HH-----HHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence 33 333444567899999997776776665554
No 265
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.40 E-value=0.027 Score=53.21 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=59.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC--CCEEEEECCCCCCCC----------ccccCCceecCCHHhhhcCCcEEEEcccC-
Q 007040 163 LVLGIVGR-SASARALATRSLSF--KMSVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCAV- 228 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~sDvVil~lPl- 228 (620)
++|+|||. |.+|..+|..|... +-++..+|....... ..............+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 99999999999854 458999999853211 00101122233566788899999998843
Q ss_pred -Ch-hhH-hhc--C-------HHHhhccCCCcEEEEcCCC
Q 007040 229 -TD-ETI-QII--N-------AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 229 -T~-~T~-~lI--~-------~~~L~~MK~gAiLINvgRG 256 (620)
.+ +++ .++ | ...+....|.+++|.++-.
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 32 122 122 1 1244455688898888543
No 266
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.38 E-value=0.025 Score=58.32 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=60.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-----cc--------------------ccCCc--e-
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-----VT--------------------FPSAA--R- 207 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~-----~~--------------------~~~g~--~- 207 (620)
...|..++|+|||+|.+|..+|+.|...|. ++..+|...-... .. ....+ .
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 357899999999999999999999999998 7888886532111 00 00000 0
Q ss_pred -----ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 208 -----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 208 -----~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
....+.+++..+|+|+.++ .+.+++..++.......+ -+|..
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~~i---p~v~~ 153 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAAKK---PLVSG 153 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHhCC---EEEEe
Confidence 0112456677888888776 456677777766555433 35554
No 267
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.34 E-value=0.32 Score=51.87 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=51.0
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||- +++..+++..+..||++|.+..|..-..... ...| +....++++.++.+|+|..-
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 67899999997 7899999999999999999999865332211 0112 34567899999999999984
No 268
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.31 E-value=0.021 Score=62.71 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=50.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CCc-------eecCCHHhh-hcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAA-------RRMDTLNDL-LAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g~-------~~~~sL~eL-L~~sDvVil~lPlT~~ 231 (620)
++|.|+|+|.+|+.+|+.|...|++|+++|+++........ .+. .....|+++ +..+|+|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 46999999999999999999999999999987643321111 111 122345555 7889999999986544
No 269
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.30 E-value=0.26 Score=52.64 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=51.5
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|+|||- +++..+++..+..+|++|.+..|..-..... ...| +....+++++++.+|+|..-
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 67899999998 8899999999999999999999865322111 1122 34567999999999999974
No 270
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.28 E-value=0.032 Score=57.36 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=34.6
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+.+|.|||.|.+|..+|..|...|. +++.+|...
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 356899999999999999999999999998 788888764
No 271
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.21 E-value=0.044 Score=59.15 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=44.4
Q ss_pred EEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCC-CC--------cc----------c-cCCceecCCHHhhhcCCcEE
Q 007040 164 VLGIVGRSASARALATRSLSF-KMSVLYFDVPEGK-GK--------VT----------F-PSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf-G~~V~~~dr~~~~-~~--------~~----------~-~~g~~~~~sL~eLL~~sDvV 222 (620)
+|||+|+|+||+.+++.+... +++|.+....... .. .. + ..+.....++++++..+|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 699999999999999998754 7887765432211 00 00 0 01233345678888889999
Q ss_pred EEcccCC
Q 007040 223 SLHCAVT 229 (620)
Q Consensus 223 il~lPlT 229 (620)
+.|.|..
T Consensus 83 IdaT~~~ 89 (341)
T PRK04207 83 VDATPGG 89 (341)
T ss_pred EECCCch
Confidence 9998754
No 272
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.20 E-value=0.062 Score=57.30 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=60.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC----------cc-----------------ccCCce--------
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK----------VT-----------------FPSAAR-------- 207 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~----------~~-----------------~~~g~~-------- 207 (620)
+|.|||.|.+|..+|+.|...|. ++..+|...-... .. ....+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 48999999999999999999998 7888885421100 00 000010
Q ss_pred -----------------ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 208 -----------------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 208 -----------------~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
....+++++.++|+|+.++ .+-+++.+++...... +..+||.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 0113678899999999999 6778898887655443 337777654
No 273
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.19 E-value=0.2 Score=56.26 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=101.6
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccCCceec--CCHHhhhcCCcEEEEc--ccCChh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRM--DTLNDLLAASDVISLH--CAVTDE 231 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~~~g~~~~--~sL~eLL~~sDvVil~--lPlT~~ 231 (620)
..+++|.|+|+|..|.++|+.|+..|++|+++|..+.... .....++... .-..+.+..+|+|+.. +|.+..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 4599999999999999999999999999999997664411 1112232221 1122567889999985 333322
Q ss_pred --------hHhhcCH-HHhhcc-CCC-cEEEEcCCChhhcHHHHHHHHHc--------CCcceeEeecCCCCCCCCccc-
Q 007040 232 --------TIQIINA-ECLQHI-KPG-AFLVNTGSSQLLDDCAVKQLLID--------GTLAGCALDGAEGPQWMEAWV- 291 (620)
Q Consensus 232 --------T~~lI~~-~~L~~M-K~g-AiLINvgRG~vVDe~AL~~AL~~--------G~I~GAaLDV~E~P~~~~spL- 291 (620)
-..+++. +++-+. .+. .+-|.-+-|+.--..-+...|+. |.|...++|+.++..+.+-..
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~Vl 164 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEPADVYVL 164 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCCCCEEEE
Confidence 1112322 233332 133 34444445887766666666654 456667888876511111111
Q ss_pred ----cCCCcE-EEcCCCCCC------cHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCccCC
Q 007040 292 ----REMPNV-LILPRSADY------SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (620)
Q Consensus 292 ----~~~pNV-IlTPHiAg~------T~ea~~~~~~~a~enL~~~L~~G~~p~nvVn~~~~y~~~ 345 (620)
|++..+ -+.|++|-. .-+.+..|.+.+...++=| .+....-++|.+..|...
T Consensus 165 ElSSfQL~~~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~--~~~~~~~Vin~dd~~~~~ 227 (448)
T COG0771 165 ELSSFQLETTSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRIL--EGQTEVAVINADDAYLKT 227 (448)
T ss_pred EccccccccCccCCccEEEEecCCHHHhhhccCHHHHHHHHHHHH--cCCccEEEEeCCcHHHhh
Confidence 122222 233433322 1223344455555555544 343337788887776444
No 274
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.15 E-value=0.054 Score=54.69 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=34.4
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|...+|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999999999999999999999998 59999876
No 275
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.12 E-value=0.085 Score=58.04 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=64.4
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccC
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPl 228 (620)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||........ ......++.+.+..+|+|+++.+.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVK---GLPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhh---hcccCCCHHHHHhCCCEEEEecCC
Confidence 478999999998 5578899999999999999999986442211 111246889999999999999986
Q ss_pred ChhhHhhcCHHHhhc-cCCCcEEEEc
Q 007040 229 TDETIQIINAECLQH-IKPGAFLVNT 253 (620)
Q Consensus 229 T~~T~~lI~~~~L~~-MK~gAiLINv 253 (620)
.+ -+ -++-+.+.. |+ ..++|++
T Consensus 387 ~~-~~-~~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 DE-FK-DLDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HH-Hh-ccCHHHHHHhcC-CCEEEeC
Confidence 53 22 234444443 54 5577774
No 276
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.02 E-value=0.045 Score=51.74 Aligned_cols=86 Identities=27% Similarity=0.289 Sum_probs=51.2
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhcc
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~M 244 (620)
+-|+|.|.+|+++++.++.+|++|+++|+++.. + ..++-+. +.+.. + +. +.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----~--------------~~~~~~~-~~~~~-~---~~--~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----F--------------PEADEVI-CIPPD-D---IL--EDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEEE-CSHHH-H---HH--HHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----c--------------CCCCccE-ecChH-H---HH--hcc-CC
Confidence 468999999999999999999999999988521 1 1333322 22211 1 11 112 45
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 245 K~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
.+++.+| +.++.-.|..+|..+|+. .....++
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 5666666 788888999888888887 4444444
No 277
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.096 Score=58.19 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=68.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEc--ccCC-h----h
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH--CAVT-D----E 231 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~--lPlT-~----~ 231 (620)
.+.|++|.|||+|.+|.++|+.|+..|+.|.++|............|+.....-.+-+..+|+|+.. +|.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4678999999999999999999999999999999764322111112322111111235679988863 2221 1 1
Q ss_pred ---hHh----hcCH-HHhhc-c-----CCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 ---TIQ----IINA-ECLQH-I-----KPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 ---T~~----lI~~-~~L~~-M-----K~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++. ++.. +.+.. + +...+-|.-+.|+.--..-|...|+.
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 111 1332 22222 2 33455666677998888888888875
No 278
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.99 E-value=0.13 Score=54.93 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=51.6
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|++|++||- +++..+++..+..||++|.+..|..-.... .. .....+++++.++.+|||....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~-~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MP-EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-cc-ceEEECCHHHHhCCCCEEEECC
Confidence 67999999988 589999999999999999999986532221 11 1345679999999999998743
No 279
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.95 E-value=0.028 Score=60.16 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=34.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~ 197 (620)
.|+.+||+|+|.+|.--.+.++|||++|+++|+....
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence 7999999999999999999999999999999988644
No 280
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.92 E-value=0.11 Score=58.66 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=71.7
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCc--cc--------------------cCCc
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKV--TF--------------------PSAA 206 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~--~~--------------------~~g~ 206 (620)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....... .+ ....
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 567889999999999999999998533211 01 0012
Q ss_pred eecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH-hhccCCCcEEEEcCCChhhcHHHHH
Q 007040 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAEC-LQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 207 ~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~-L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
...+++.+.++.||+|+++....+ -+. ++-+. ...|++..++||. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 345567789999999999998653 222 34333 4567766688884 44 45665554
No 281
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.91 E-value=0.032 Score=57.61 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=68.9
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEE--------CCCCCCCC-------------cccc---C-CceecCCHH
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF--------DVPEGKGK-------------VTFP---S-AARRMDTLN 213 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~--------dr~~~~~~-------------~~~~---~-g~~~~~sL~ 213 (620)
.+.|+++.|-|+|++|+.+|+.|...|++|+++ |+..-... ..+. . +.... +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 107 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND 107 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence 479999999999999999999999999999887 44321111 0010 0 11111 221
Q ss_pred -hhh-cCCcEEEEcccCChhhHhhcCHHHhh-ccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcc
Q 007040 214 -DLL-AASDVISLHCAVTDETIQIINAECLQ-HIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 214 -eLL-~~sDvVil~lPlT~~T~~lI~~~~L~-~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+++ ..|||++.|. ..+.|+.+... .++.++-+| -.+-+++- .++.. .|++..|.
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 444 5799999884 34578888777 776665444 45556654 44444 77777765
No 282
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.89 E-value=0.087 Score=50.16 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=49.1
Q ss_pred EEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEcccCChh
Q 007040 165 LGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 165 VGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
|.|+| .|.+|+.+++.|...|++|+++.|++..... ..++ ...+++.+.+..+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 57898 5999999999999999999999998754321 1111 1223466778899999999986544
No 283
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=94.88 E-value=0.18 Score=53.80 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=51.3
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||-| ++..+++..+..||++|.+..|..-.....+ ..| +....++++.++.+|||...
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 689999999995 9999999999999999999998653221111 112 23467899999999999873
No 284
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=94.86 E-value=0.48 Score=51.28 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=64.8
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCc-------c--ccCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKV-------T--FPSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~-------~--~~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||=+ ++..+++..+..||++|.++.|..-.... . ...| +...+++++.++.+|||..-+
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 678999999986 67888899999999999999986432211 0 0112 345689999999999999732
Q ss_pred ----cCCh---hhH------hhcCHHHhhcc-CCCcEEEEcC
Q 007040 227 ----AVTD---ETI------QIINAECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 227 ----PlT~---~T~------~lI~~~~L~~M-K~gAiLINvg 254 (620)
.... +.+ -.|+.+.++.. |++++|.-+.
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 1100 111 12577777775 6777777653
No 285
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.86 E-value=0.056 Score=58.66 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-----ecCCHHhhhcCCcEEEE
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLLAASDVISL 224 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL~~sDvVil 224 (620)
.++|||||-|..|+.++..++.+|++|+++|+.+........+... ..+.+.+++..+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 3689999999999999999999999999999876443211221111 12246778889999864
No 286
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.86 E-value=0.035 Score=62.56 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=68.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceec--CCHHhhhcCCcEEEEcccCChhhH----
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM--DTLNDLLAASDVISLHCAVTDETI---- 233 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~--~sL~eLL~~sDvVil~lPlT~~T~---- 233 (620)
+.|+++.|+|+|.+|.+.++.|+..|++|+++|............++... ....+.+..+|+|+..-...+..-
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 47889999999999999999999999999999965432211111233221 123455678998887653332211
Q ss_pred ------hhcCHHHhh-cc-------CC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 234 ------QIINAECLQ-HI-------KP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 234 ------~lI~~~~L~-~M-------K~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.+++.-.|. .+ ++ ..+-|--+-|+.--..-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123332222 11 12 234454456888777777777765
No 287
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.77 E-value=0.052 Score=58.65 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=35.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|..++|.|||.|.+|..+|..|...|. +|..+|...
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 457899999999999999999999999999 899999753
No 288
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.76 E-value=0.035 Score=58.62 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=58.2
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---ccC-C----ceecCCHHhhhcCCcEEEEcccCCh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FPS-A----ARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~---~~~-g----~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
..|+++.|+|.|..+++++..|+..|+ +|++++|+....... +.. + .....+++.+ .++|+||+++|..-
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~-~~~dliINaTp~Gm 202 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGL-EEADLLINATPVGM 202 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccc-cccCEEEECCCCCC
Confidence 578999999999999999999999996 899999987543311 111 1 1111222222 26999999999763
Q ss_pred hhH--h-hcCHHHhhccCCCcEEEEcC
Q 007040 231 ETI--Q-IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 231 ~T~--~-lI~~~~L~~MK~gAiLINvg 254 (620)
.-. . +++ ...++++.++.++-
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~v 226 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEec
Confidence 221 1 222 34455555555543
No 289
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.75 E-value=0.14 Score=54.22 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=33.1
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+.|+++.|||.|..+++++..|...|+ +|++++|+.
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 578899999999999999999998897 899999985
No 290
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.74 E-value=0.13 Score=55.08 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=51.2
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEE
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil 224 (620)
+.|.+|++||- +++..+++..+..||+ +|.+..|..-.........+....++++.++.+|||..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 99999986532211111234556899999999999986
No 291
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.74 E-value=0.087 Score=57.93 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=63.9
Q ss_pred ecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
|.|++|||+|+- .-...++.+|+..|.+|.+|||-..........++....++.++++.||+++++....
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD 387 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence 889999999984 4578899999999999999999764433111114567789999999999999987633
Q ss_pred hhhHhhcCHHHhhccCCCcEEEE
Q 007040 230 DETIQIINAECLQHIKPGAFLVN 252 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLIN 252 (620)
+-+.+ +-+.+ .|| +.++|+
T Consensus 388 -ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 388 -EFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred -HHhcc-Chhhh-hcc-CCEEEe
Confidence 22222 33333 565 556655
No 292
>PRK08223 hypothetical protein; Validated
Probab=94.72 E-value=0.069 Score=56.59 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=34.6
Q ss_pred cceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 156 GMRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
+...|+..+|.|||+|.+|..+|..|...|. ++..+|..
T Consensus 21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3467999999999999999999999999998 78888865
No 293
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.69 E-value=0.053 Score=56.88 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=67.6
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC------ccccCCceecCCHHhhhcCCcEEEEcccCCh
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~ 230 (620)
.+|+..+++|+|+ |.||..+|+.|.+.+......-|...... ...+.+....-+++..+.+.|+++-.....
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~- 241 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP- 241 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC-
Confidence 5789999999996 99999999999999887766664432111 011122333346666666777766555433
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHH
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~ 262 (620)
+-..|+. .++|||+++|+-|+..=+|+.
T Consensus 242 -~g~~I~p---q~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 242 -KGVEIFP---QHLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred -CCceech---hhccCCeEEEcCCcCcccccc
Confidence 3356665 458999999999987755543
No 294
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.69 E-value=0.023 Score=50.61 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=55.3
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhHhhc
Q 007040 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~~lI 236 (620)
|.|+|+|.+|+.+++.|+..+.+|+++|..+.........+.. ....|.++ +.++|.|+++.+....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 5699999999999999999777999999887443322222211 11223332 67899999999865443 33
Q ss_pred CHHHhhccCCCcEEEE
Q 007040 237 NAECLQHIKPGAFLVN 252 (620)
Q Consensus 237 ~~~~L~~MK~gAiLIN 252 (620)
-...+..+.+...+|-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3445566656555553
No 295
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.66 E-value=0.091 Score=56.72 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=58.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcc---cc--CC--ceecCCHHh-hhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVT---FP--SA--ARRMDTLND-LLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-G~~V~~-~dr~~~~~~~~---~~--~g--~~~~~sL~e-LL~~sDvVil~lPlT~~ 231 (620)
++|+|||. |.+|+.+++.|..+ ++++.. +++.. ..... .. .+ .....++++ .+..+|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 57999996 99999999999977 678755 45322 21100 00 00 011223333 45789999999996422
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHH
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
..++ ...++.|..+|+.+-.--.+..+++
T Consensus 82 -~~~v----~~a~~aG~~VID~S~~fR~~~~~~~ 110 (343)
T PRK00436 82 -MDLA----PQLLEAGVKVIDLSADFRLKDPEVY 110 (343)
T ss_pred -HHHH----HHHHhCCCEEEECCcccCCCCchhh
Confidence 2221 2223579999999865545443333
No 296
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=94.53 E-value=0.16 Score=55.08 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEE
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil 224 (620)
+.|.+|+|||- .++..+++..+..+|++|.++.|..-...... ..| +....++++.++.+|||..
T Consensus 152 l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 152 LEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 68999999997 67888888999999999999998642221101 012 3456799999999999998
No 297
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=94.52 E-value=0.47 Score=51.84 Aligned_cols=68 Identities=7% Similarity=0.065 Sum_probs=48.9
Q ss_pred eecCcEEEEEeCC--------hhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCC
Q 007040 159 RCRGLVLGIVGRS--------ASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAAS 219 (620)
Q Consensus 159 ~L~GktVGIIGlG--------~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~s 219 (620)
.+.|++|+|+|.| ++..+++..+..||++|.+..|..-..... ...| +....++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3689999999853 344778888999999999999864221110 0122 33568999999999
Q ss_pred cEEEEcc
Q 007040 220 DVISLHC 226 (620)
Q Consensus 220 DvVil~l 226 (620)
|||..-.
T Consensus 247 Dvvyt~~ 253 (357)
T TIGR03316 247 DIVYPKS 253 (357)
T ss_pred CEEEECC
Confidence 9999863
No 298
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.52 E-value=0.024 Score=61.41 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=52.9
Q ss_pred EEEEeCChhhHHHHHHHhhCC-C-EEEEECCCCCCCCccc----cCCc-------eecCCHHhhhcCCcEEEEcccCChh
Q 007040 165 LGIVGRSASARALATRSLSFK-M-SVLYFDVPEGKGKVTF----PSAA-------RRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG-~-~V~~~dr~~~~~~~~~----~~g~-------~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
|+|||.|.+|+.+++.|...+ + +|++.|++........ ...+ ....+|.++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 789999999999999999776 5 8999999875422111 0011 11224778899999999999744
Q ss_pred hHhhcCHHHh-hccCCCcEEEEcC
Q 007040 232 TIQIINAECL-QHIKPGAFLVNTG 254 (620)
Q Consensus 232 T~~lI~~~~L-~~MK~gAiLINvg 254 (620)
++...+ ..++.|.-.||++
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEESS
T ss_pred ----hhHHHHHHHHHhCCCeeccc
Confidence 222222 2345677788843
No 299
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=94.46 E-value=0.4 Score=51.84 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=51.1
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||-+ ++..+++..+..||++|.+..|..-.....+ ..| +...++++++++.+|||..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 689999999997 8899999999999999999998653222100 112 33467899999999999984
No 300
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.46 E-value=0.17 Score=56.12 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=54.8
Q ss_pred eeecCcEEEEEeC----------ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcc
Q 007040 158 RRCRGLVLGIVGR----------SASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 158 ~~L~GktVGIIGl----------G~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
.++.|++|+|+|+ ..-+..+++.|...| .+|.+|||........+.. .....++++.+..||+|+++.
T Consensus 316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDG-LVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccC-ceeeCCHHHHHhCCCEEEECC
Confidence 3478999999998 557889999999996 9999999985432211111 223478999999999999999
Q ss_pred cCC
Q 007040 227 AVT 229 (620)
Q Consensus 227 PlT 229 (620)
+..
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 866
No 301
>PRK05086 malate dehydrogenase; Provisional
Probab=94.45 E-value=0.13 Score=54.78 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=59.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHh---hCCCEEEEECCCCCCCC--ccccC-C----cee--cCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSL---SFKMSVLYFDVPEGKGK--VTFPS-A----ARR--MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk---afG~~V~~~dr~~~~~~--~~~~~-g----~~~--~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||. |.||..+|..|. ..+..+..+|++..... ..+.. . +.. .+++.+.++.+|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 57999999 999999998773 45668999998653211 11111 1 111 246667889999999988652
Q ss_pred hh---hH-hhc------CHH---HhhccCCCcEEEEcCCCh
Q 007040 230 DE---TI-QII------NAE---CLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 230 ~~---T~-~lI------~~~---~L~~MK~gAiLINvgRG~ 257 (620)
.. ++ .++ -.+ .+....+.+++|+++-.-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 21 11 111 112 334446788999987654
No 302
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.42 E-value=0.25 Score=52.19 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=106.1
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhC----CC-------EEEEECCCCCC----CC-----ccccCCce--ecCCHHhhh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSF----KM-------SVLYFDVPEGK----GK-----VTFPSAAR--RMDTLNDLL 216 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf----G~-------~V~~~dr~~~~----~~-----~~~~~g~~--~~~sL~eLL 216 (620)
.|.+.+|.|+|.|..|-.+|+.+... |+ +++.+|+..-- .. ..+..... ...+|.|++
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 47889999999999999999999877 87 89999987411 00 01111111 235899999
Q ss_pred c--CCcEEEEcccCChhhHhhcCHHHhhccC---CCcEEEEcCCChhhcHHHHHHHHH--cCC-cceeEeecCCCCCCC-
Q 007040 217 A--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCALDGAEGPQWM- 287 (620)
Q Consensus 217 ~--~sDvVil~lPlT~~T~~lI~~~~L~~MK---~gAiLINvgRG~vVDe~AL~~AL~--~G~-I~GAaLDV~E~P~~~- 287 (620)
+ +.|+++=+-- .-++|+++.++.|. +..++.=.|.....-|..-.++.+ +|+ |.+.+.- | ||..
T Consensus 102 ~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsP-f--~pv~~ 174 (279)
T cd05312 102 KAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSP-F--PPVEY 174 (279)
T ss_pred HhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCC-C--CCeee
Confidence 9 8899986432 23799999999998 899999999876633433333333 344 4432210 0 1100
Q ss_pred ---CccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHHHHHHHcC
Q 007040 288 ---EAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 288 ---~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL~~~L~~G 329 (620)
...--+..|+++=|=++-.. ...-++|...+++.|..+....
T Consensus 175 ~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~ 224 (279)
T cd05312 175 NGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE 224 (279)
T ss_pred CCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc
Confidence 00112567899999765432 2234778888888888865333
No 303
>PLN02602 lactate dehydrogenase
Probab=94.41 E-value=0.17 Score=55.00 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=59.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccCCcee--cCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARR--MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~~g~~~--~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||.|.+|..+|-.|...|. ++..+|....... ..+...... ..+.+ .+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 699999999999999999986665 7999998764322 001111111 12444 488999999985432
Q ss_pred h---hhH-hhc--C-------HHHhhccCCCcEEEEcCC
Q 007040 230 D---ETI-QII--N-------AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 230 ~---~T~-~lI--~-------~~~L~~MK~gAiLINvgR 255 (620)
. .|+ .++ | ...+....|.+++|+++-
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 233 122 1 124455678999999883
No 304
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.33 E-value=0.22 Score=55.01 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=70.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccc-cCCc--eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTF-PSAA--RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~-~~g~--~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.++++.|+|.|.+|.++|+.|...|++|+++|+...... ... ..+. ...+..++....+|+|+++.-..+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~ 82 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDS 82 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCC
Confidence 6789999999999999999999999999999998752211 000 1122 22233445667899999876543332
Q ss_pred Hhh----------cC-HHHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 233 IQI----------IN-AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 233 ~~l----------I~-~~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
..+ +. .+.+.. .+...+-|--+.|+.--..-|...|..
T Consensus 83 ~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 83 PPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred HHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 211 11 122222 232234444456888888878888865
No 305
>PRK08328 hypothetical protein; Provisional
Probab=94.33 E-value=0.08 Score=54.04 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=34.7
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+++|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 22 q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999999998 788888653
No 306
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.32 E-value=0.049 Score=62.22 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=34.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.++++.|+|.|.+|+++|..|...|++|++++|+..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46789999999999999999999999999999998753
No 307
>PLN02527 aspartate carbamoyltransferase
Probab=94.30 E-value=0.19 Score=53.61 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=49.9
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|+|||-+ ++..+++..+..| |++|.+..|..-.....+ ..| +....++++.++.||||....
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 226 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR 226 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence 679999999976 6889999988887 999999998653221111 112 234678999999999999843
No 308
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.27 E-value=0.06 Score=65.82 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=47.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhC-CCE-------------EEEECCCCCCCCcccc--CC---cee-cCCHHhh---hc
Q 007040 161 RGLVLGIVGRSASARALATRSLSF-KMS-------------VLYFDVPEGKGKVTFP--SA---ARR-MDTLNDL---LA 217 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lkaf-G~~-------------V~~~dr~~~~~~~~~~--~g---~~~-~~sL~eL---L~ 217 (620)
+.++|+|||.|.||+.+|+.|... +++ |.+.|++......... .+ +.. +.+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477899999999999999999754 333 8889988644331110 01 111 3344444 46
Q ss_pred CCcEEEEcccCC
Q 007040 218 ASDVISLHCAVT 229 (620)
Q Consensus 218 ~sDvVil~lPlT 229 (620)
.+|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999964
No 309
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.24 E-value=0.11 Score=50.69 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=28.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+|+|||.|.+|..+|+.|...|+ ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599998764
No 310
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.22 E-value=0.57 Score=52.70 Aligned_cols=157 Identities=17% Similarity=0.091 Sum_probs=88.0
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEE-EECCCC-------CCCC----------------ccccC---CceecC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVL-YFDVPE-------GKGK----------------VTFPS---AARRMD 210 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~-~~dr~~-------~~~~----------------~~~~~---g~~~~~ 210 (620)
.++.|++|.|=|+|++|+.+|+.|..+|++|+ +.|.+. -..+ ..+.. +....
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~- 311 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV- 311 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-
Confidence 46899999999999999999999999999999 445541 0000 00100 11222
Q ss_pred CHHhhh-cCCcEEEEcccCChhhHhhcCHHHhhcc-CCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCC-CCC
Q 007040 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHI-KPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQW 286 (620)
Q Consensus 211 sL~eLL-~~sDvVil~lPlT~~T~~lI~~~~L~~M-K~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~-P~~ 286 (620)
+-++++ -.|||.+-|. +.+.|+.+....+ +.++.+| --+-+++-. + -.+.|.+..|. .+=|..-+ --.
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~-~~PD~~aNAGGV 383 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI-FCPGKAANAGGV 383 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE-EEChhhhcCCCe
Confidence 222332 3688888554 6678888777755 4445444 445565544 3 34566666654 23333221 000
Q ss_pred CCccccCCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007040 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 287 ~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~a~enL~~~L 326 (620)
.-+-|--..|.. +..|..++...++.+++.+...+.+
T Consensus 384 ~vS~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~~ 420 (454)
T PTZ00079 384 AISGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEACV 420 (454)
T ss_pred eeehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 001111112221 5666667777777766666555544
No 311
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.19 E-value=0.098 Score=57.22 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=34.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|.+.+|.|||+|.+|..+|..|...|. ++..+|..
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467899999999999999999999999998 89999876
No 312
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.18 E-value=0.31 Score=54.56 Aligned_cols=107 Identities=9% Similarity=0.137 Sum_probs=75.2
Q ss_pred ecCcEEEEEeC----ChhhHHHHHHHhhCCC--EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhH
Q 007040 160 CRGLVLGIVGR----SASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafG~--~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
++-++|.|||. |.+|..+.+.|+..|+ +|+.++|.... -.|...+.+++++-...|++++++|.. .+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAK-YVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHH-HHH
Confidence 46678999999 8899999999999887 79999987532 135566778999988899999999943 334
Q ss_pred hhcCHHHhhccCC-CcEEEEcCCCh-----hhcHHHHHHHHHcCCcc
Q 007040 234 QIINAECLQHIKP-GAFLVNTGSSQ-----LLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 234 ~lI~~~~L~~MK~-gAiLINvgRG~-----vVDe~AL~~AL~~G~I~ 274 (620)
.++. +..+ ..- .+++|..|-++ ...+++|.+..+.+.+.
T Consensus 79 ~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 79 QVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 4443 2333 333 44454443333 23467788888887665
No 313
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.18 E-value=0.13 Score=54.35 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=70.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------ccccCCc-ee---cCCHHhhhcCCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------VTFPSAA-RR---MDTLNDLLAASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------~~~~~g~-~~---~~sL~eLL~~sDvVil~lPlT~ 230 (620)
++|+|||.|.||.-+|-.|...|.+|..++|.....+ .....+. .. .....+.....|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 4699999999999999999999999999998642211 0000111 00 011112345789999998654
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEe
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaL 278 (620)
++...+ +.....+.+++.+|-.--| +-.++.+.+.+-..++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 344433 3445567788888877555 334455666765555555443
No 314
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.16 E-value=0.099 Score=52.15 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=35.2
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|..++|.|||+|.+|.++|+.|...|+ ++..+|...
T Consensus 16 Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 16 QKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457899999999999999999999999999 688998764
No 315
>PLN02342 ornithine carbamoyltransferase
Probab=94.14 E-value=0.76 Score=50.10 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=50.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------ccC-CceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-------FPS-AARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-------~~~-g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||- .++..+++..+..||++|.+..|..-..... ... .+....++++.++.+|||..-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence 67999999997 4688888888899999999999865322210 111 2345688999999999999763
No 316
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.13 E-value=0.089 Score=59.22 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=68.4
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--ccccC--Ccee--cCCHHhhhcCCcEEEEc--ccCC--
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--VTFPS--AARR--MDTLNDLLAASDVISLH--CAVT-- 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--~~~~~--g~~~--~~sL~eLL~~sDvVil~--lPlT-- 229 (620)
+.+++|+|||+|.+|.++|+.|+..|++|.++|....... ..... ++.. -....+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999997652211 11111 2221 11123456689999986 4443
Q ss_pred ---hh-------hHhhcCH-HHhhc-c--------CCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 230 ---DE-------TIQIINA-ECLQH-I--------KPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 230 ---~~-------T~~lI~~-~~L~~-M--------K~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
|. ...++.. +.+.. + ++..+-|--+-|+.--..-|...|+...
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 21 1122322 22221 2 1234445445688877777777776543
No 317
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.10 E-value=0.03 Score=57.44 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=81.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC------------------ccccC-----------CceecCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK------------------VTFPS-----------AARRMDT 211 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~------------------~~~~~-----------g~~~~~s 211 (620)
.-+.|+|||.|.||..||+.+..-|++|+.+|.+..... ...+. -.....+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 345799999999999999999999999999999864221 00000 0112345
Q ss_pred HHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCcc
Q 007040 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW 290 (620)
Q Consensus 212 L~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLI-NvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~sp 290 (620)
+.++++++|+|+=++-.+-+.+.-|=++.=...|+.++|+ |+++- ...++..++++.. ..++|-.|-++|.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl---~lt~ia~~~~~~s-rf~GlHFfNPvPv---- 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSL---SLTDIASATQRPS-RFAGLHFFNPVPV---- 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccce---eHHHHHhhccChh-hhceeeccCCchh----
Confidence 6677777888875554433322222222223457777765 55553 4455666766543 3468877765442
Q ss_pred ccCCCcEEEcCCCC
Q 007040 291 VREMPNVLILPRSA 304 (620)
Q Consensus 291 L~~~pNVIlTPHiA 304 (620)
-++=.||=|+..+
T Consensus 162 -MKLvEVir~~~TS 174 (298)
T KOG2304|consen 162 -MKLVEVIRTDDTS 174 (298)
T ss_pred -HHHhhhhcCCCCC
Confidence 2344566666443
No 318
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.06 E-value=0.11 Score=57.24 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=92.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------------------CCCcccc-CCceecCCHHhhhc-C
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------------------KGKVTFP-SAARRMDTLNDLLA-A 218 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~------------------~~~~~~~-~g~~~~~sL~eLL~-~ 218 (620)
.|.|++|.|=|+|+.|+.+|+.|...|.+|+++|-+.. ....... .+...... ++++. .
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence 38999999999999999999999999999999987654 1110000 12233322 45543 5
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEE
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVI 298 (620)
|||++=|. +.+.|+.+...+++-. +++-.+-|++-.+.. -..++.|-+. +=|..- ..-.|+
T Consensus 283 cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t~eA~-~i~~erGIl~--~PD~la----------NAGGV~ 343 (411)
T COG0334 283 CDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTTPEAD-EILLERGILV--VPDILA----------NAGGVI 343 (411)
T ss_pred CcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCCHHHH-HHHHHCCCEE--cChhhc----------cCcCee
Confidence 88887433 6778988888888766 888888888753332 2222444332 222211 122233
Q ss_pred EcC--------CCCCCcHHHHHHHHHHHHHHHHHHHHc
Q 007040 299 ILP--------RSADYSEEVWMEIRDKAISVLQTFFFD 328 (620)
Q Consensus 299 lTP--------HiAg~T~ea~~~~~~~a~enL~~~L~~ 328 (620)
++= -..|..+++..++..++.+..+.+...
T Consensus 344 vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~ 381 (411)
T COG0334 344 VSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQA 381 (411)
T ss_pred eehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 122445667777777777777766543
No 319
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.03 E-value=0.43 Score=52.63 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=69.5
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc----cccCCceec--CCHHhhhcC-CcEEEEcc--cCC-
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRM--DTLNDLLAA-SDVISLHC--AVT- 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~~~~g~~~~--~sL~eLL~~-sDvVil~l--PlT- 229 (620)
+.|+++.|+|.|.+|.++|+.|+..|++|+++|........ ....++... ....+++.. .|+|+..- |.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 57899999999999999999999999999999976532111 111233221 123344554 89888755 322
Q ss_pred hh-------hHhhcCHHHh-hcc-CCCcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 230 DE-------TIQIINAECL-QHI-KPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 230 ~~-------T~~lI~~~~L-~~M-K~gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
+. ...++....| ..+ +...+-|--+.|+.--..-|...|+..
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 21 1122333323 333 333455555678888888888888753
No 320
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.03 E-value=0.17 Score=53.54 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred EEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC-------cccc--C--CceecCCHHhhhcCCcEEEEcccCChh
Q 007040 165 LGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK-------VTFP--S--AARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG--~~V~~~dr~~~~~~-------~~~~--~--g~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
|+|||.|.+|..+|-.|...| .++..+|+...... .... . .+....+ .+.++.||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998888 58999998764322 0000 0 1111233 4588899999999874221
Q ss_pred -----------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 232 -----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
+..++. ...+....|.+++||++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 122221 224445568999999983
No 321
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.03 E-value=0.087 Score=57.18 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=34.9
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|.+.+|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457899999999999999999999999998 788888754
No 322
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.03 E-value=0.26 Score=54.84 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=63.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEE-EECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVGRSASARALATRSLSF----------KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------G~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
.+|||||+|.||+.+++.|... +++|. +++++..........+.....++++++.+ .|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4699999999999999887532 45544 45766533221111223345689999864 69999998754
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 007040 230 DETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I 273 (620)
.....+ ....|+.|.-+|-..-+.+. .-++|.++.++..+
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 222222 23556666666643322222 23567777766554
No 323
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.01 E-value=0.11 Score=57.05 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=57.5
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CCc--e-----ecCCHH-hhhcCCcEEEEcccCC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA--R-----RMDTLN-DLLAASDVISLHCAVT 229 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g~--~-----~~~sL~-eLL~~sDvVil~lPlT 229 (620)
+..+++.|+|+|.+|+.+|+.|...|.+|+++|.++........ .+. . ....|. .-+.++|+|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 44688999999999999999999999999999987643221110 011 1 111232 2356889998888865
Q ss_pred hhhHhhcCHHHhhccCCCcEEEEc
Q 007040 230 DETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 230 ~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
.. +++-......+.+..+++-+
T Consensus 309 ~~--n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EA--NILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HH--HHHHHHHHHHhCCCeEEEEE
Confidence 33 33333333445544444433
No 324
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.99 E-value=0.22 Score=53.10 Aligned_cols=91 Identities=18% Similarity=0.290 Sum_probs=57.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccc--CCceecCCHHhhhcCCcEEEEcccCC-
Q 007040 164 VLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFP--SAARRMDTLNDLLAASDVISLHCAVT- 229 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~---------~~~~--~g~~~~~sL~eLL~~sDvVil~lPlT- 229 (620)
+|+|||.|.+|..+|-.|...|. ++..+|....... ..+. ..+....+-.+.+++||+|+++.-..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 58999999999999999876665 8999998753222 1111 01111122346788999999976542
Q ss_pred -h-hh---Hhhc--CH-------HHhhccCCCcEEEEcC
Q 007040 230 -D-ET---IQII--NA-------ECLQHIKPGAFLVNTG 254 (620)
Q Consensus 230 -~-~T---~~lI--~~-------~~L~~MK~gAiLINvg 254 (620)
| .| ..++ |. ..+..-.|++++|.++
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1 23 2232 22 2334445788898765
No 325
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=93.97 E-value=0.77 Score=49.68 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=50.7
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|++|++||-+ ++..+++..+..||++|.+..|..-..... ...| +....++++.++.+|+|..-
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 679999999975 889999999999999999999864222100 0122 34567899999999999984
No 326
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.96 E-value=0.23 Score=53.20 Aligned_cols=93 Identities=13% Similarity=0.245 Sum_probs=59.7
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccCC-----cee-c--CCHHhhhcCCcEEEEcccCCh-
Q 007040 164 VLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPSA-----ARR-M--DTLNDLLAASDVISLHCAVTD- 230 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~-~~~~~g-----~~~-~--~sL~eLL~~sDvVil~lPlT~- 230 (620)
+|+|||. |.+|..+|-.|...+. ++..||....... ....+. +.. . +++.+.++.||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999876554 8999998762222 111111 111 1 134678999999999876421
Q ss_pred --h--------hHhhcC--HHHhhccCCCcEEEEcCCC
Q 007040 231 --E--------TIQIIN--AECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 231 --~--------T~~lI~--~~~L~~MK~gAiLINvgRG 256 (620)
. +..++. ...+..-.|++++|+++-.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 222221 1234445789999998764
No 327
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.94 E-value=0.1 Score=55.24 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=53.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceec-----CCHHhhhc---CCcEEEEcccCChh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-----DTLNDLLA---ASDVISLHCAVTDE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~-----~sL~eLL~---~sDvVil~lPlT~~ 231 (620)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++....+.....|.... .++.++.. ..|+|+-++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58899999999999999999999999 68888877644332222222111 12222221 146666555421 1
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCC
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
+ + ...++.++++..+|.+|-
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 234555666666666653
No 328
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.89 E-value=0.093 Score=55.78 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=31.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
.|.+|.|+|.|.||...+..++..|++|+++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 5788999999999999999999999999999874
No 329
>PRK11579 putative oxidoreductase; Provisional
Probab=93.89 E-value=0.095 Score=56.09 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=46.4
Q ss_pred cEEEEEeCChhhHH-HHHHHhh-CCCEEE-EECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 163 LVLGIVGRSASARA-LATRSLS-FKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lka-fG~~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
.+|||||+|.||+. .+..+.. -+++|. ++|++.......+ .+...+.+++++++ +.|+|++++|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADW-PTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhC-CCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 47999999999985 5666654 378876 4677653322111 12345679999996 4799999999653
No 330
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.81 E-value=0.11 Score=56.79 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=34.3
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
..+.+++|.|||.|.+|..+|..|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999999 79999986
No 331
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.80 E-value=0.087 Score=58.67 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=70.3
Q ss_pred ecCcEEEEEeCChhhHH-HHHHHhhCCCEEEEECCCCCCCCccc-cCCceec-CCHHhhhcCCcEEEEcc--cCC-hhhH
Q 007040 160 CRGLVLGIVGRSASARA-LATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRM-DTLNDLLAASDVISLHC--AVT-DETI 233 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~-vA~~LkafG~~V~~~dr~~~~~~~~~-~~g~~~~-~sL~eLL~~sDvVil~l--PlT-~~T~ 233 (620)
..+++|.|||+|.+|.+ +|+.|+..|++|.++|.........+ ..++... ..-.+.+..+|+|+..- |.+ |...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 79999999999999997653211111 1133221 11234566899888753 322 2221
Q ss_pred -------hhcCHH-Hhhcc-CC-CcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 234 -------QIINAE-CLQHI-KP-GAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 234 -------~lI~~~-~L~~M-K~-gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
.+++.- .+..+ ++ ..+-|--+-|+.--..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 234443 33333 32 34555555698888887888887543
No 332
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.75 E-value=0.29 Score=52.78 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=65.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEEE-ECCCCC----CC-Cc------cccCC-------ceecCCHH
Q 007040 163 LVLGIVGRSASARALATRSLSF----------KMSVLY-FDVPEG----KG-KV------TFPSA-------ARRMDTLN 213 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------G~~V~~-~dr~~~----~~-~~------~~~~g-------~~~~~sL~ 213 (620)
.+|||+|+|.||+.+++.+... +++|.+ +|+... .. .. ....+ .....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3699999999999999998754 567654 454321 00 00 00001 01123788
Q ss_pred hhhc--CCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 007040 214 DLLA--ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (620)
Q Consensus 214 eLL~--~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I 273 (620)
+++. ..|+|+.++|....+...--.-....|+.|.-+|-..-+.+. ..++|.++.++..+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 8884 579999999965443222112234556677777765444442 34567777766554
No 333
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.71 E-value=0.089 Score=59.02 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=69.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCceecC--CHHhhhcCCcEEEEc--ccCC-hhh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMD--TLNDLLAASDVISLH--CAVT-DET 232 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~~~~~--sL~eLL~~sDvVil~--lPlT-~~T 232 (620)
.+.+++|.|+|+|.+|+++|+.|...|+.|.++|+........ ...|+.... ...+.+.++|+|+.. +|.+ |..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4788999999999999999999999999999999764322111 112333221 123445688988875 3322 221
Q ss_pred -------HhhcCHHHhhc-------c-CC-CcEEEEcCCChhhcHHHHHHHHHcC
Q 007040 233 -------IQIINAECLQH-------I-KP-GAFLVNTGSSQLLDDCAVKQLLIDG 271 (620)
Q Consensus 233 -------~~lI~~~~L~~-------M-K~-gAiLINvgRG~vVDe~AL~~AL~~G 271 (620)
..+++.-.+.. + .+ ..+-|--+-|+.--..-|...|+..
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11233333321 1 12 2344444568888888888888753
No 334
>PLN00106 malate dehydrogenase
Probab=93.71 E-value=0.27 Score=52.89 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=62.1
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-cc-----ccCCce---ecCCHHhhhcCCcEEEEcccC
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VT-----FPSAAR---RMDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~-~~-----~~~g~~---~~~sL~eLL~~sDvVil~lPl 228 (620)
...+|+|||. |.+|..+|..|...+. ++..+|....... .. ....+. ..+++.+.++.||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4569999999 9999999999985454 8999998762221 01 001111 123457889999999997654
Q ss_pred Ch---hhHh-hc--C-------HHHhhccCCCcEEEEcCCCh
Q 007040 229 TD---ETIQ-II--N-------AECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 229 T~---~T~~-lI--~-------~~~L~~MK~gAiLINvgRG~ 257 (620)
.. .++. ++ | .+.+....|.+++|+++-.-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 21 1221 11 1 12344456889999987654
No 335
>PRK07411 hypothetical protein; Validated
Probab=93.67 E-value=0.11 Score=57.05 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=34.8
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|...+|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 357899999999999999999999999998 788888753
No 336
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.59 E-value=0.37 Score=50.26 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=45.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCCCC---C--c---cccCCceecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEGKG---K--V---TFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fG~~V~~-~dr~~~~~---~--~---~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..... . . ....++..+.+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999985 5887665 67432111 0 0 001234556788888667899999886
No 337
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=93.56 E-value=0.63 Score=50.43 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=50.8
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------ccCC--ceecCCHHhhhcCCcEEEEc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------~~~g--~~~~~sL~eLL~~sDvVil~ 225 (620)
+.|.+|++||-+ ++..+++..+..||++|.++.|..-..... ...| +....++++.++.+|+|..-
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 678999999976 689999999999999999999865322110 0012 34568899999999999975
No 338
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.56 E-value=0.3 Score=56.96 Aligned_cols=128 Identities=16% Similarity=0.265 Sum_probs=82.0
Q ss_pred EEEEcC-CCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhhC
Q 007040 106 RLIHVD-TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSF 184 (620)
Q Consensus 106 ~VtNtp-g~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lkaf 184 (620)
++++-. .......||-++-|=|-|+| |.-- +. .+...|.+.+|.|||.|.+|..+|+.|.+.
T Consensus 298 r~~dL~~~mdP~~la~~avdlnlkLmk--------------WRll-P~--l~~ekL~~~kVLIvGaGGLGs~VA~~La~~ 360 (664)
T TIGR01381 298 ISVDLSKEFDPKRLAERSVDLNLKLMK--------------WRLH-PD--LQLERYSQLKVLLLGAGTLGCNVARCLIGW 360 (664)
T ss_pred eEechhhhcCHHHHHHHHHHHHHHHHh--------------hhcC-Ch--hhHHHHhcCeEEEECCcHHHHHHHHHHHHc
Confidence 444433 33557788888877776663 3211 00 122568999999999999999999999999
Q ss_pred CC-EEEEECCCCCC------------------CC----------ccccC-----Cce-e-------c------------C
Q 007040 185 KM-SVLYFDVPEGK------------------GK----------VTFPS-----AAR-R-------M------------D 210 (620)
Q Consensus 185 G~-~V~~~dr~~~~------------------~~----------~~~~~-----g~~-~-------~------------~ 210 (620)
|. +++.+|...-. +. ..... +.. . . .
T Consensus 361 GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~ 440 (664)
T TIGR01381 361 GVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIA 440 (664)
T ss_pred CCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHH
Confidence 99 78888853210 00 00000 000 0 0 2
Q ss_pred CHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 211 sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
.+.+++.++|+|+.++- +.+++-+++.....+ +..+|+.+
T Consensus 441 ~l~~Li~~~DvV~d~tD-n~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 441 RLEQLIKDHDVVFLLLD-SREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred HHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence 36678999999998885 678898888655543 44666654
No 339
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.55 E-value=0.28 Score=43.18 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=44.7
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCCE-EEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSL-SFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
..++.|+|+|++|++++.... ..|+. +.++|..+...-... .++..+.+++++.+. .|+.++++|..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence 356999999999999985543 45653 456666654333222 345555577777766 99999999943
No 340
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.51 E-value=0.061 Score=56.70 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=48.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-----CCc--eecCC---HHhhhcCCcEEEEcccC
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-----SAA--RRMDT---LNDLLAASDVISLHCAV 228 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~-----~g~--~~~~s---L~eLL~~sDvVil~lPl 228 (620)
+.|+++.|+|.|..|++++-.|...|+ +|+++||+......... .+. ....+ +.+.+..+|+|+.+.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 468899999999999999999999998 79999998643321110 010 01112 23456678999988885
Q ss_pred C
Q 007040 229 T 229 (620)
Q Consensus 229 T 229 (620)
.
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 4
No 341
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.47 E-value=0.37 Score=51.64 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=60.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccCC-----cee--c-CCHHhhhcCCcEEEEcccCC-
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPSA-----ARR--M-DTLNDLLAASDVISLHCAVT- 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~~~~~-~~~~~g-----~~~--~-~sL~eLL~~sDvVil~lPlT- 229 (620)
++|+|||. |.+|..+|-.|...|. ++..+|.....+. ....+. +.. . +++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 47999999 9999999999987775 8999998721111 011111 111 1 23457889999999876542
Q ss_pred -h-hhHh-hc--CH-------HHhhccCCCcEEEEcCCC
Q 007040 230 -D-ETIQ-II--NA-------ECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 230 -~-~T~~-lI--~~-------~~L~~MK~gAiLINvgRG 256 (620)
| +|+- ++ |. +.+..-.|.+++||++-.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 2 2222 22 21 244445789999998764
No 342
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.43 E-value=0.079 Score=53.66 Aligned_cols=90 Identities=16% Similarity=0.043 Sum_probs=59.7
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCc----eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAA----RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~----~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
.++.|++|.|||-|..|..=|+.+...|.+|+++++........ ...+. ...-.+++ +..+++|+.+++..
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~--- 83 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE--- 83 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH---
Confidence 57999999999999999999999999999999999887211100 00000 11112333 33488888777654
Q ss_pred HhhcCHHHhhccCCCcEEEEc
Q 007040 233 IQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINv 253 (620)
-+|+..+..+++-.++||+
T Consensus 84 --~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 --ELNERIAKAARERRILVNV 102 (210)
T ss_pred --HHHHHHHHHHHHhCCceec
Confidence 3345555556666677775
No 343
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.38 E-value=0.66 Score=49.86 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=61.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC---cccc-------CCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK---VTFP-------SAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~---~~~~-------~g~~~~~sL~eLL~~sDvV 222 (620)
++|+|||. |.+|..+|..|...|. ++..+|..... .. .... ..+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 47999999 9999999999986665 79999985422 11 0000 1112224556788999999
Q ss_pred EEcccCCh---hhHh-hc--CH-------HHhhccC-CCcEEEEcCCChhhcHHH
Q 007040 223 SLHCAVTD---ETIQ-II--NA-------ECLQHIK-PGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 223 il~lPlT~---~T~~-lI--~~-------~~L~~MK-~gAiLINvgRG~vVDe~A 263 (620)
+++.-... +|+- ++ |. ..+.... |.+++|+++ ..+|.-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA 135 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence 99875421 1221 11 11 2333344 588999987 4455444
No 344
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.38 E-value=0.2 Score=57.83 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=52.1
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCC---HHhhhcCCcEEEEcccCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDT---LNDLLAASDVISLHCAVT 229 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~s---L~eLL~~sDvVil~lPlT 229 (620)
+.....++|||||-|..|+.++..++.+|++|+++|+.+......+.+... .+.+ +.++..++|+|+......
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 345788999999999999999999999999999999876432211111111 1223 556678899997765544
No 345
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.22 Score=49.58 Aligned_cols=36 Identities=11% Similarity=-0.063 Sum_probs=32.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.|+++.|.|. |.||+.+++.|...|++|++++++.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57889999996 9999999999999999999988764
No 346
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.36 E-value=0.17 Score=50.01 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=33.2
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.|+++.|.|. |.||..+++.|...|++|++.+++..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999986 77999999999999999999998763
No 347
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.33 E-value=0.85 Score=48.68 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=82.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------CCCccc-cCC----ceecCCHHhhhcCCcEEEEcccCChh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------KGKVTF-PSA----ARRMDTLNDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~------~~~~~~-~~g----~~~~~sL~eLL~~sDvVil~lPlT~~ 231 (620)
++|.|+|.|.||.-+|.+|...|..|..+.|... .+-... ..+ ......-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 5799999999999999999999988888877663 110000 011 111223345667899999998644 4
Q ss_pred hHhhcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCC--CCCCCccccCCCcEEEcCCCCCCc
Q 007040 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYS 307 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~--P~~~~spL~~~pNVIlTPHiAg~T 307 (620)
|...+ +.....+++.++++-.=-| +=.++.+.+.+...+|. .++..+.. ..+..-.......+.+.+..++..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 44444 3456677888777644333 22333555555555444 24443321 111122223356677777666655
No 348
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.32 E-value=0.095 Score=59.94 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=59.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~~ 234 (620)
.++.|+|+|++|+.+|+.|+..|.+|++.|.++...+.....+.. ..+.|+++ ++++|.|+++++..+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 568899999999999999999999999999887543322222221 11123222 5689999999998777665
Q ss_pred hcCHHHhhccCCCcEEEE
Q 007040 235 IINAECLQHIKPGAFLVN 252 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLIN 252 (620)
++-. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 5533 233345555554
No 349
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.31 E-value=0.61 Score=49.27 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=74.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHh-------
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ------- 234 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~------- 234 (620)
|++++|||--.=-..+++.|...|++|..|.-..... .+ .++......++.+.++|+|++-+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLED--GF-TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccc--cc-ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 6789999999988999999999999987776432111 12 2455555667779999999999997655211
Q ss_pred ---hcCHHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 235 ---IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 235 ---lI~~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
.++++.|+.|+++++ +-+|. +..++.++.++..|.
T Consensus 78 ~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVK 115 (287)
T ss_pred CCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCe
Confidence 246889999998654 55554 344555566666665
No 350
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.29 E-value=0.14 Score=56.22 Aligned_cols=39 Identities=5% Similarity=0.025 Sum_probs=34.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|...+|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 37 q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 356899999999999999999999999998 788888653
No 351
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.25 E-value=0.11 Score=54.46 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.3
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCC--C-EEEEECCCCCCCCcc-ccCCc-eecCCHHhhhcC--CcEEEEcccCCh
Q 007040 163 LVLGIVGRSASAR-ALATRSLSFK--M-SVLYFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDVISLHCAVTD 230 (620)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafG--~-~V~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--sDvVil~lPlT~ 230 (620)
.++||||+|.|++ ..+..+...+ + -|.++|++....... ...++ ..+.+++++++. .|+|++++|..-
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~ 79 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL 79 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh
Confidence 4799999997775 5888888776 3 455668887543311 11233 356799999987 499999999663
No 352
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.20 E-value=0.15 Score=57.25 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=62.1
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-CC-c--eecCCHHhhhcCCcEEEEcccCChhh
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA-A--RRMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~-~g-~--~~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
+.+|.|++|.|||-|.+|..=++.|..+|++|+++.+.......... .+ + ..-.-..+.+..+++|+.++...
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~--- 83 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD--- 83 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH---
Confidence 35799999999999999999999999999999999886532211110 11 1 11111234567888888776644
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
-+|......++...+++|++
T Consensus 84 --~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 --AVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HHhHHHHHHHHHcCcEEEEC
Confidence 24555555566666788864
No 353
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.20 E-value=2.4 Score=43.49 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=35.4
Q ss_pred eeecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..+.|++|.|||-|.+|..=++.|..+|.+|+++.|...
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 467899999999999999999999999999999998763
No 354
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.16 E-value=0.4 Score=51.63 Aligned_cols=97 Identities=11% Similarity=0.193 Sum_probs=59.3
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhh--CCCEEEEECCCCCCCC-cc----ccC-Cceec---CCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLS--FKMSVLYFDVPEGKGK-VT----FPS-AARRM---DTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~Lka--fG~~V~~~dr~~~~~~-~~----~~~-g~~~~---~sL~eLL~~sDvVil~lP 227 (620)
+..++|+|||. |.||..+|..|.. ...++..+|....... .. ... .+... .+..+.++.||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 46679999999 9999999999984 4458999998432221 01 001 11111 122578999999998775
Q ss_pred CChh---hH-hhcCH------H---HhhccCCCcEEEEcCCC
Q 007040 228 VTDE---TI-QIINA------E---CLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 228 lT~~---T~-~lI~~------~---~L~~MK~gAiLINvgRG 256 (620)
.... ++ .++.. . .+..-.+.++++.++-+
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 4221 11 12211 2 23334667788887654
No 355
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=93.15 E-value=1.2 Score=48.23 Aligned_cols=67 Identities=6% Similarity=0.044 Sum_probs=50.9
Q ss_pred ecCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------cCC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|.+|++||-+ ++..+++..+..+|++|.+..|..-.....+ ..| +....++++.++.+|||..-.
T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 679999999986 7899999999999999999998652211100 012 344678999999999999753
No 356
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=93.12 E-value=0.34 Score=54.10 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=50.9
Q ss_pred ecCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|++|++||-+ ++..+++..+..+ |++|.+..|..-.....+ ...+....++++.++.+|||....
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 689999999994 8899999998877 999999998653221111 112345689999999999999844
No 357
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.07 E-value=0.19 Score=57.88 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=48.7
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------------------ccCCceecCCHHhhh
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT----------------------FPSAARRMDTLNDLL 216 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----------------------~~~g~~~~~sL~eLL 216 (620)
-.|++|.|.|. |.||+.+++.|...|++|++++|+....... ....+...+++.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 36889999986 9999999999999999999999875432100 000011122345667
Q ss_pred cCCcEEEEcccCC
Q 007040 217 AASDVISLHCAVT 229 (620)
Q Consensus 217 ~~sDvVil~lPlT 229 (620)
..+|+||+++...
T Consensus 158 ggiDiVVn~AG~~ 170 (576)
T PLN03209 158 GNASVVICCIGAS 170 (576)
T ss_pred cCCCEEEEccccc
Confidence 8899999887543
No 358
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=93.07 E-value=1.5 Score=52.34 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=118.6
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH
Q 007040 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (620)
Q Consensus 102 erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (620)
+..|+|.|..-.. +|=-+++-+|+.+|-. .+.+...+|.|.|.|.-|-.+|+.|
T Consensus 151 ~~~ip~f~DD~~G---Ta~v~lA~l~na~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l 204 (752)
T PRK07232 151 RMDIPVFHDDQHG---TAIISAAALLNALELV-----------------------GKKIEDVKIVVSGAGAAAIACLNLL 204 (752)
T ss_pred hcCCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEECccHHHHHHHHHH
Confidence 4478998884433 3334566677766421 1347889999999999999999999
Q ss_pred hhCCC---EEEEECCCCC---CC----C---ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 182 LSFKM---SVLYFDVPEG---KG----K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 182 kafG~---~V~~~dr~~~---~~----~---~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
...|. +++.+|+..- .. . ..+... ....+|.|++..+|+++=.- +-++|+++.+..|.+..
T Consensus 205 ~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 278 (752)
T PRK07232 205 VALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADNP 278 (752)
T ss_pred HHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 99998 8999998741 10 0 011111 22358999999999887532 24899999999999999
Q ss_pred EEEEcCCChhh-cHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHH
Q 007040 249 FLVNTGSSQLL-DDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVL 322 (620)
Q Consensus 249 iLINvgRG~vV-De~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL 322 (620)
++.=.+..... ..+..+++ ..|.|.+.+- ...|- +..|+++=|-++-.. ....++|.-.+++.|
T Consensus 279 iifalsNP~~E~~p~~a~~~-~~~~i~atGr--s~~pn-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 348 (752)
T PRK07232 279 IIFALANPDPEITPEEAKAV-RPDAIIATGR--SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAI 348 (752)
T ss_pred EEEecCCCCccCCHHHHHHh-cCCEEEEECC--cCCCC-------cccceeecchhhHHHHHcCCccCCHHHHHHHHHHH
Confidence 99999987642 22222222 2233433321 11121 567899999754322 223467777777777
Q ss_pred HHH
Q 007040 323 QTF 325 (620)
Q Consensus 323 ~~~ 325 (620)
...
T Consensus 349 a~~ 351 (752)
T PRK07232 349 AEL 351 (752)
T ss_pred Hhh
Confidence 775
No 359
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.05 E-value=0.17 Score=56.83 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=69.0
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccCCcee--cCCHHhhhcCCcEEEEcc--cCC-hh
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAARR--MDTLNDLLAASDVISLHC--AVT-DE 231 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~~~g~~~--~~sL~eLL~~sDvVil~l--PlT-~~ 231 (620)
+.|++|+|+|+|..|.+.|+.|+..|++|+++|........ ....++.. .....+.+..+|+|+..- |.+ |.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 46889999999999999999999999999999965422111 11111111 111235567899988753 332 21
Q ss_pred h-------HhhcCHHHh--hc-cC-----CCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 T-------IQIINAECL--QH-IK-----PGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T-------~~lI~~~~L--~~-MK-----~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
. ..++++-.| .. ++ ...+-|--+-|+.--..-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 124444333 33 32 1345555566888877778878764
No 360
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.01 E-value=0.14 Score=52.73 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=31.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..+++.++++|.+ |++.+++..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 588999999999999999999999996 888876653
No 361
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.99 E-value=0.18 Score=55.93 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=67.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---CCceecC--CHHhhhcCCcEEEEcc--cCC-hh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRMD--TLNDLLAASDVISLHC--AVT-DE 231 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~---~g~~~~~--sL~eLL~~sDvVil~l--PlT-~~ 231 (620)
.+-+++|||+|.+|.++|+.|+..|++|.++|....... .... .++.... .-.+.+.++|+|+..- |.+ |+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 356799999999999999999999999999997653211 1111 1332211 1234567899887743 322 22
Q ss_pred hH-------hhcCH-HHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 TI-------QIINA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T~-------~lI~~-~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.. .++.. +.+.. ++...+-|--+.|+.--..-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11 13332 33333 343345555566888887778888875
No 362
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=92.98 E-value=0.15 Score=54.57 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=44.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc--eecCC---HHhhhcCCcEEEEc
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDT---LNDLLAASDVISLH 225 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~--~~~~s---L~eLL~~sDvVil~ 225 (620)
+|||||-|..|+.++..++.+|++|+++|+++......+.+.. ..+.+ +.+++..+|+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5999999999999999999999999999987643331122111 11223 67788889988543
No 363
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.97 E-value=0.13 Score=59.68 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=63.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce-------ecCCHHhh-hcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~sDvVil~lPlT~~T~ 233 (620)
..++.|+|+|++|+.+|+.|...|.++++.|.++...+.....+.. ..+.|+++ +.+||+|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4579999999999999999999999999999887543322222211 11223333 678999999999876665
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
.++ .....+.|...+|-.+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 554 23455666766665544
No 364
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.95 E-value=0.24 Score=49.11 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|+|.|.+|+.+++.++..|.+|++.+++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57889999999999999999999999999998875
No 365
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.87 E-value=0.4 Score=51.06 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=56.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCC--CCCC---ccc-----cCC----ceecCCHHhhhcCCcEEEEc
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPE--GKGK---VTF-----PSA----ARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~--~V~~~dr~~--~~~~---~~~-----~~g----~~~~~sL~eLL~~sDvVil~ 225 (620)
++|+|||. |.+|..+|..|...|. +|+.+|+.. .... ... ..+ +....+. +.+..||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999997 9999999999998876 599999854 2111 000 011 1122344 458999999999
Q ss_pred ccCChh---hH--------hhcC--HHHhhccCCCcEEEEcC
Q 007040 226 CAVTDE---TI--------QIIN--AECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPlT~~---T~--------~lI~--~~~L~~MK~gAiLINvg 254 (620)
...... ++ .++. ...+....|++++|+++
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~ 121 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT 121 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 863221 21 1121 12344455677888776
No 366
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.76 E-value=0.27 Score=49.04 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=34.7
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
...|++.+|.|||+|.+|.++|+.|...|. ++..+|...
T Consensus 14 q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356899999999999999999999999999 588888664
No 367
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.65 E-value=0.33 Score=51.52 Aligned_cols=89 Identities=11% Similarity=0.191 Sum_probs=57.0
Q ss_pred EEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccCCceecCCHHhhhcCCcEEEEcccCC--h-h
Q 007040 167 IVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCAVT--D-E 231 (620)
Q Consensus 167 IIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~sDvVil~lPlT--~-~ 231 (620)
|||.|.+|..+|..|...+. ++..+|....... ...........+-.+.+++||+|+++.-.. + .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999987666 7999998764322 001111222223457889999999976542 1 1
Q ss_pred --------hHhhcC--HHHhhccCCCcEEEEcCC
Q 007040 232 --------TIQIIN--AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 232 --------T~~lI~--~~~L~~MK~gAiLINvgR 255 (620)
+..++. ...+....|.+++|+++-
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 222221 234445678999999873
No 368
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.64 E-value=0.71 Score=42.99 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=29.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+|.|||+|.+|..+|+.|...|+ ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999764
No 369
>PLN02214 cinnamoyl-CoA reductase
Probab=92.60 E-value=0.37 Score=51.43 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=49.2
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----c----------ccCCceecCCHHhhhcCCcEEE
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----T----------FPSAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~----------~~~g~~~~~sL~eLL~~sDvVi 223 (620)
.+.+++|.|.|. |-||+.+++.|...|++|.+..+....... . ..........+.+++..+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367899999997 999999999999999999999876532110 0 0001112234667788899888
Q ss_pred EcccC
Q 007040 224 LHCAV 228 (620)
Q Consensus 224 l~lPl 228 (620)
.+...
T Consensus 87 h~A~~ 91 (342)
T PLN02214 87 HTASP 91 (342)
T ss_pred EecCC
Confidence 77643
No 370
>PRK06398 aldose dehydrogenase; Validated
Probab=92.60 E-value=0.42 Score=48.43 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=33.6
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.| .|.||.++|+.|...|++|+..+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 46899999998 469999999999999999999998754
No 371
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.58 E-value=0.13 Score=46.43 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred eCChhhHHHHHHHhhC----CCEEEEE-CCC--CCCCCccccCCceecCCHHhhhc--CCcEEEEcccCChhhHhhcCHH
Q 007040 169 GRSASARALATRSLSF----KMSVLYF-DVP--EGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 169 GlG~IG~~vA~~Lkaf----G~~V~~~-dr~--~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPlT~~T~~lI~~~ 239 (620)
|+|.||+.+++.+... +++|.++ +++ ................++++++. ..|+|+=|.+..+- . .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-A----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-H----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-H----HH
Confidence 8999999999999865 6776654 565 11111111123345678999998 89999999554322 2 23
Q ss_pred HhhccCCCcEEEEcCCChhh
Q 007040 240 CLQHIKPGAFLVNTGSSQLL 259 (620)
Q Consensus 240 ~L~~MK~gAiLINvgRG~vV 259 (620)
....|+.|.-+|-.+-+.+.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHH
T ss_pred HHHHHHCCCeEEEECHHHhh
Confidence 45567789999999888888
No 372
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.49 E-value=0.67 Score=49.85 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=57.7
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCC-------CEEEEECCCCCC--CC---ccccC-------CceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGR-SASARALATRSLSFK-------MSVLYFDVPEGK--GK---VTFPS-------AARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG-------~~V~~~dr~~~~--~~---~~~~~-------g~~~~~sL~eLL~~sDvVi 223 (620)
+|+|+|. |.+|..+|..|...+ .+|..+|+.... .. ....+ .+....++.+.++.||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 5999999 999999999998744 489999985422 11 00110 1112356778899999999
Q ss_pred EcccCCh---hhHh-hc--CH-------HHhhcc-CCCcEEEEcC
Q 007040 224 LHCAVTD---ETIQ-II--NA-------ECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 224 l~lPlT~---~T~~-lI--~~-------~~L~~M-K~gAiLINvg 254 (620)
.+.-... .++. ++ |. ..+... +|++++|.++
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8765422 1211 11 22 233444 5789999887
No 373
>PRK10206 putative oxidoreductase; Provisional
Probab=92.46 E-value=0.16 Score=54.67 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=44.0
Q ss_pred EEEEEeCChhhHH-HHHHHhh--CCCEEE-EECCCCCCCCccccC-CceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 164 VLGIVGRSASARA-LATRSLS--FKMSVL-YFDVPEGKGKVTFPS-AARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 164 tVGIIGlG~IG~~-vA~~Lka--fG~~V~-~~dr~~~~~~~~~~~-g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
++||||+|.|++. .+..+.. -+++|. ++|+........... +...+.+++++|. +.|+|++++|...
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 6999999998864 3454432 367776 578865332211111 2345678999996 5699999999653
No 374
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=92.46 E-value=0.46 Score=42.86 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=57.3
Q ss_pred eEEEEEEecCCceEEeeecccccceEEeeeccccCCCccceEEE-EecCccccccccccCCceeeecccceEEEeecccc
Q 007040 507 YVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFD 585 (620)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (620)
-.|+|++ ..|.||+.+. .|. ++.+.+ .+|..+|-+ +.+..++=|||- .||.|.+++.=-+....|+-+
T Consensus 44 g~v~Lrs--~~G~yls~~~--~g~----l~~~~~-~~~~e~F~~e~~~~g~~al~~~--~G~yl~~~~~g~l~~~~~~~~ 112 (119)
T cd00257 44 GKYALRS--HDGKYLSADS--DGG----VQLEGH-PNADCRFTLEFHGDGKWALRAE--NGRYLGGDGSGTLKASSETVG 112 (119)
T ss_pred CeEEEEE--CCCcEEEEEC--CCC----EEecCC-CCCCcEEEEEECCCCeEEEEcC--CCCEEeecCCCeEEEecCCCC
Confidence 4568886 6999999863 443 244566 789999999 888789999965 999999987555555556679
Q ss_pred cccccee
Q 007040 586 AWESWAI 592 (620)
Q Consensus 586 ~~~~~~~ 592 (620)
-||.|.+
T Consensus 113 ~~e~f~~ 119 (119)
T cd00257 113 PDELFEL 119 (119)
T ss_pred ccceecC
Confidence 9999874
No 375
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.41 E-value=0.86 Score=50.17 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=68.1
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----c--cCCceec--CCHHhhhcCCcEEEEcc--cC-Chhh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----F--PSAARRM--DTLNDLLAASDVISLHC--AV-TDET 232 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~--~~g~~~~--~sL~eLL~~sDvVil~l--Pl-T~~T 232 (620)
++.|||+|.+|.++|+.|+..|++|.++|......... . ..|+... .+ .+.+..+|+|+..- |. .|+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 37899999999999999999999999999765422211 1 1233321 23 34567899888754 32 2221
Q ss_pred H-------hhcCH-HHhhc-cCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 007040 233 I-------QIINA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (620)
Q Consensus 233 ~-------~lI~~-~~L~~-MK~gAiLINvgRG~vVDe~AL~~AL~~G~ 272 (620)
. .++.. +.+.. ++...+-|.-+.|+.--..-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 12333 23333 34345556666799888888888887543
No 376
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=92.36 E-value=4.2 Score=45.38 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=118.1
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHH
Q 007040 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (620)
Q Consensus 102 erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (620)
+..|+|.|..-.. +|=-+++-+|+.+|-. .+.|...+|.|.|.|.-|-++|+.+
T Consensus 165 ~~~IPvFhDDqqG---Taiv~lA~llnalk~~-----------------------gk~l~d~kiv~~GAGAAgiaia~~l 218 (432)
T COG0281 165 RMNIPVFHDDQQG---TAIVTLAALLNALKLT-----------------------GKKLKDQKIVINGAGAAGIAIADLL 218 (432)
T ss_pred cCCCCcccccccH---HHHHHHHHHHHHHHHh-----------------------CCCccceEEEEeCCcHHHHHHHHHH
Confidence 4578888875543 3444566677666421 1358899999999999999999999
Q ss_pred hhCCC---EEEEECCCCCCCC--cc--cc-CCce-------ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCC
Q 007040 182 LSFKM---SVLYFDVPEGKGK--VT--FP-SAAR-------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246 (620)
Q Consensus 182 kafG~---~V~~~dr~~~~~~--~~--~~-~g~~-------~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~ 246 (620)
++.|+ +|+.+|+..--.+ .. .. .... .... ++.+..+|+++-+-- .|.|.++.++.|.+
T Consensus 219 ~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~ 292 (432)
T COG0281 219 VAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAK 292 (432)
T ss_pred HHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhcc
Confidence 99999 6999998742111 01 00 0000 0011 447788998875432 28999999999999
Q ss_pred CcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcH-----HHHHHHHHHHHHH
Q 007040 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISV 321 (620)
Q Consensus 247 gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~-----ea~~~~~~~a~en 321 (620)
..++.=.+-....-..+.+..-.+ |+++=.+-.|.+++ +..||++=|.+.-..- ..-++|.-.+++.
T Consensus 293 ~PiIfalaNP~pEi~Pe~a~~~~~----~aaivaTGrsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~A 364 (432)
T COG0281 293 HPIIFALANPTPEITPEDAKEWGD----GAAIVATGRSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEA 364 (432)
T ss_pred CCEEeecCCCCccCCHHHHhhcCC----CCEEEEeCCCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHHHHHH
Confidence 999998887653221221111111 23333333344333 7789999998654332 2357777778888
Q ss_pred HHHHH
Q 007040 322 LQTFF 326 (620)
Q Consensus 322 L~~~L 326 (620)
|..+.
T Consensus 365 iA~~~ 369 (432)
T COG0281 365 IADLA 369 (432)
T ss_pred HHhhc
Confidence 88863
No 377
>PRK06392 homoserine dehydrogenase; Provisional
Probab=92.34 E-value=0.61 Score=50.29 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=63.3
Q ss_pred EEEEEeCChhhHHHHHHHhh--------CCCEEEEE-CCCCCCCCcc----------ccCC---ceecC--CHHhhh-cC
Q 007040 164 VLGIVGRSASARALATRSLS--------FKMSVLYF-DVPEGKGKVT----------FPSA---ARRMD--TLNDLL-AA 218 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lka--------fG~~V~~~-dr~~~~~~~~----------~~~g---~~~~~--sL~eLL-~~ 218 (620)
+|+|||+|++|+.+++.|.. ++++|.++ |++....... ...+ ..... ++++++ ..
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 69999999999999999875 56776654 5443111000 0000 01111 455553 45
Q ss_pred CcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 007040 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (620)
Q Consensus 219 sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~I 273 (620)
+|+|+=+.|....-... -.-....|+.|.-+|-..-|.+. .-..|.++.+++..
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence 79999998753210001 11234557788888888777775 44556666665543
No 378
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.30 E-value=0.15 Score=59.40 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=60.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce----ecCC---HHh-hhcCCcEEEEcccCChhhH
Q 007040 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR----RMDT---LND-LLAASDVISLHCAVTDETI 233 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~----~~~s---L~e-LL~~sDvVil~lPlT~~T~ 233 (620)
..++-|+|+|++|+.+|+.|.+.|.++++.|.++...+.....+.. ...+ |++ -+.++|.|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4679999999999999999999999999999887543322112221 1122 222 2568999999998776655
Q ss_pred hhcCHHHhhccCCCcEEEEcC
Q 007040 234 QIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvg 254 (620)
.++ ...+.+.|+..+|--+
T Consensus 480 ~i~--~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIARA 498 (621)
T ss_pred HHH--HHHHHhCCCCeEEEEE
Confidence 543 2344455665555433
No 379
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.29 E-value=0.43 Score=50.65 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=35.5
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+..|...+|.|+|+|.+|.++|+.|...|. +|..+|...
T Consensus 14 q~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 14 MKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 467899999999999999999999999999 799999765
No 380
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.28 E-value=0.91 Score=48.84 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=60.6
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCC--CCCC---ccccC-------CceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGR-SASARALATRSLSFKM-------SVLYFDVPE--GKGK---VTFPS-------AARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~--~~~~---~~~~~-------g~~~~~sL~eLL~~sDvVi 223 (620)
+|+|||. |.||..+|..|...|. .+..+|... .... ....+ ......+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 6999999 9999999999886443 599999876 2221 00001 1111245678899999999
Q ss_pred EcccCC--h-hhHh--------hcC--HHHhhcc-CCCcEEEEcCCChhhcHHH
Q 007040 224 LHCAVT--D-ETIQ--------IIN--AECLQHI-KPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 224 l~lPlT--~-~T~~--------lI~--~~~L~~M-K~gAiLINvgRG~vVDe~A 263 (620)
++.-.. + +|+- ++. ...+... +|++++|.++ ..+|.-+
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 876432 2 1222 121 1234445 5888998885 4455444
No 381
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.27 E-value=0.23 Score=52.07 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=49.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
.|.++.|+|.|.||...++.++.+|++ |+++|+.......+..... .+.-++.-...|+|+-+..... .+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~----~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPS----LI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHH----HH-HH
Confidence 467899999999999999999999997 5566665432221111111 1111111123566666655321 11 23
Q ss_pred HhhccCCCcEEEEcC
Q 007040 240 CLQHIKPGAFLVNTG 254 (620)
Q Consensus 240 ~L~~MK~gAiLINvg 254 (620)
.++.|+++..++.+|
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 456666666666664
No 382
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.22 E-value=0.75 Score=49.54 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=58.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC--------c--cccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK--------V--TFPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~--------~--~~~~g~~~~~sL~eLL~~sDvV 222 (620)
.+|+|||. |.+|..+|-.|...|. ++..+|..... .. . ..........+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 46999998 9999999999987665 79999985421 11 0 0101112223556788999999
Q ss_pred EEcccCCh---hhHh-hc--CH-------HHhhccCC-CcEEEEcC
Q 007040 223 SLHCAVTD---ETIQ-II--NA-------ECLQHIKP-GAFLVNTG 254 (620)
Q Consensus 223 il~lPlT~---~T~~-lI--~~-------~~L~~MK~-gAiLINvg 254 (620)
+++.-... +|+. ++ |. ..+....| .+++|.++
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 99765421 2222 11 11 23334444 89999987
No 383
>PRK07877 hypothetical protein; Provisional
Probab=92.22 E-value=0.2 Score=59.26 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=60.6
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC------------------------ccccC--Cce-
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK------------------------VTFPS--AAR- 207 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~--~V~~~dr~~~~~~------------------------~~~~~--g~~- 207 (620)
...|.+++|+|||+| +|..+|..|...|. +++.+|...-... ..... .+.
T Consensus 102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 356899999999999 89999999998884 7888876421100 00000 011
Q ss_pred -----ecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhc
Q 007040 208 -----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQH 243 (620)
Q Consensus 208 -----~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~ 243 (620)
..+++++++..+|+|+-|+- +-+++.+|+.....+
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 12367889999999998886 568899998876665
No 384
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.18 E-value=0.25 Score=51.89 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=46.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lP 227 (620)
++|.|.| .|.||+.+++.|...|++|.+++|+..........++ ....++.+++..+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4688998 6999999999999999999999987532210001111 123356778899999887643
No 385
>PRK15076 alpha-galactosidase; Provisional
Probab=92.09 E-value=0.24 Score=55.24 Aligned_cols=103 Identities=12% Similarity=0.208 Sum_probs=64.3
Q ss_pred cEEEEEeCChhhHHHHH--HH---hhC-CCEEEEECCCCCCCC----------ccc--cCCceecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVGRSASARALAT--RS---LSF-KMSVLYFDVPEGKGK----------VTF--PSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~--~L---kaf-G~~V~~~dr~~~~~~----------~~~--~~g~~~~~sL~eLL~~sDvVil 224 (620)
++|+|||.|.+|...+- .+ .++ |.+|+.||....... ... ...+....++.+.+..||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999999965544 22 233 569999998764322 001 1123335678899999999999
Q ss_pred cccCC--h--------------------hhH-------h-----hc--CHHHhhccCCCcEEEEcCCChhhcHHHHH
Q 007040 225 HCAVT--D--------------------ETI-------Q-----II--NAECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 225 ~lPlT--~--------------------~T~-------~-----lI--~~~~L~~MK~gAiLINvgRG~vVDe~AL~ 265 (620)
++-.. . +|. . ++ -.+.+....|+++|||++-..=+-..++.
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~ 158 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN 158 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh
Confidence 88653 1 110 0 01 01234455689999999886645555554
No 386
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.04 E-value=0.51 Score=50.76 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=59.5
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC---cccc-------CCceecCCHHhhhcCCcEEE
Q 007040 164 VLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK---VTFP-------SAARRMDTLNDLLAASDVIS 223 (620)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~---~~~~-------~g~~~~~sL~eLL~~sDvVi 223 (620)
+|+|||. |.+|..+|..|...|+ .+..+|..... .. .... .......+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 4899999 9999999999987555 59999985432 11 0000 11111224568889999999
Q ss_pred EcccCCh---hhH-hhc--C-------HHHhhcc-CCCcEEEEcCCChhhcHHH
Q 007040 224 LHCAVTD---ETI-QII--N-------AECLQHI-KPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 224 l~lPlT~---~T~-~lI--~-------~~~L~~M-K~gAiLINvgRG~vVDe~A 263 (620)
+..-... +|+ .++ | ...+... +|.+++|+++ ..+|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8765421 121 122 1 1234445 5888999887 3344444
No 387
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.03 E-value=0.3 Score=52.83 Aligned_cols=67 Identities=16% Similarity=0.042 Sum_probs=44.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CC-----ceecCCHHhhhcCCcEEEEccc
Q 007040 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SA-----ARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g-----~~~~~sL~eLL~~sDvVil~lP 227 (620)
.+++|.|.|- |-||+.+++.|...|++|+++++.......... .. ......+..++..+|+|+-+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 5688999987 999999999999999999999975421110000 00 1111234455678898886653
No 388
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.02 E-value=0.55 Score=50.39 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=57.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---c----------------------cccCC--ce----ecCC
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---V----------------------TFPSA--AR----RMDT 211 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~----------------------~~~~g--~~----~~~s 211 (620)
+|.|||+|.+|.++|+.|...|. ++..+|...-... . ..... +. ...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 48999999999999999999998 7888886532111 0 00000 00 1111
Q ss_pred ---HHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 212 ---LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 212 ---L~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
..+++.+.|+|+.++ .+.+++..++.-.... +.-+|..+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHHC---CCCEEEEec
Confidence 236788899988887 4566777787765553 345777654
No 389
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.02 E-value=0.16 Score=50.83 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=47.3
Q ss_pred EEEEEeCChhhHHHHHHH--hhCCCEEE-EECCCCCCCCccc-cCCceecCCHHhhhc--CCcEEEEcccCCh
Q 007040 164 VLGIVGRSASARALATRS--LSFKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~L--kafG~~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~--~sDvVil~lPlT~ 230 (620)
++.|||.|++|++++..= +..||++. +||..+...-... ...+...++|+..++ +.|+.++|+|...
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 589999999999999763 46789755 7887764322111 122345667888887 6889999999543
No 390
>PRK08324 short chain dehydrogenase; Validated
Probab=91.93 E-value=0.14 Score=59.95 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=34.9
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
..+.|+++.|.| .|.||..+|+.|...|++|++++++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 356899999999 699999999999999999999998763
No 391
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=91.89 E-value=0.65 Score=50.34 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=65.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-------CCCEEE--EECCCCCCC-C------------------ccccCCceecCCH
Q 007040 161 RGLVLGIVGRSASARALATRSLS-------FKMSVL--YFDVPEGKG-K------------------VTFPSAARRMDTL 212 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-------fG~~V~--~~dr~~~~~-~------------------~~~~~g~~~~~sL 212 (620)
.-.+|+|||.|+=|.++|+.+.. |..+|. +|.-..... . ...+..+....+|
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 44679999999999999998852 333444 333222110 0 1233445667889
Q ss_pred HhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCC
Q 007040 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 213 ~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG 256 (620)
.+++.+||+++..+|.+ -..-|-.++..+.|+++..|...-|
T Consensus 100 ~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecc
Confidence 99999999999999966 2233345677889999999998766
No 392
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.89 E-value=0.34 Score=54.24 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--cc-cCCceecCCHHhhhcCCcEEEEcc--cCC-hhh--
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--TF-PSAARRMDTLNDLLAASDVISLHC--AVT-DET-- 232 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~--~~-~~g~~~~~sL~eLL~~sDvVil~l--PlT-~~T-- 232 (620)
.|++|+|+|+|..|.++|+.|+. |++|+++|........ .. ...... ....+.+..+|+|+..= |.+ |..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vV~SPgI~~~~p~~~~ 82 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIA-ALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceec-cCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence 57899999999999999999996 9999999954322110 00 000111 11234567899888753 322 221
Q ss_pred -----HhhcCHHHh--hccCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 233 -----IQIINAECL--QHIKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 233 -----~~lI~~~~L--~~MK~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
..++++-.| ..+++ ..+-|--+-|+.--..-|...|+.
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123433333 23333 234444456888888888888875
No 393
>PRK05442 malate dehydrogenase; Provisional
Probab=91.85 E-value=0.75 Score=49.61 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=60.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC---c-------cccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK---V-------TFPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~-------~V~~~dr~~~~--~~---~-------~~~~g~~~~~sL~eLL~~sDvV 222 (620)
.+|+|||. |.+|..+|-.|...|+ ++..+|..... .. . .+........+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 47999998 9999999998875444 79999985421 11 0 0101122234566888999999
Q ss_pred EEcccCC--h-hhHh-hc--CHH-------Hhhc-cCCCcEEEEcCCChhhcHHH
Q 007040 223 SLHCAVT--D-ETIQ-II--NAE-------CLQH-IKPGAFLVNTGSSQLLDDCA 263 (620)
Q Consensus 223 il~lPlT--~-~T~~-lI--~~~-------~L~~-MK~gAiLINvgRG~vVDe~A 263 (620)
+++.-.. + +|+- ++ |.+ .+.. .+|.+++|.++ ..+|.-.
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 9976531 1 1222 11 211 2333 44789999988 3444444
No 394
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.83 E-value=0.36 Score=53.26 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=66.8
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccccCCceec--CCHHhhhcCCcEEEEcccCChhhHh--
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRM--DTLNDLLAASDVISLHCAVTDETIQ-- 234 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~~g~~~~--~sL~eLL~~sDvVil~lPlT~~T~~-- 234 (620)
+.++++.|||+|.+|.+.++.|+..|++|.++|....... .....++... ....+.+...|+|+.. |.-+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence 5688999999999999999999999999999997653221 1122233221 1122445678876653 33222111
Q ss_pred ---------hcCH-HHhhcc-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 235 ---------IINA-ECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 235 ---------lI~~-~~L~~M-K~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++.. +++..+ +.-.+-|--+.|+.--..-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 333333 32344455556888777778888874
No 395
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.71 E-value=0.34 Score=53.66 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=68.7
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---CCceec--CCHHhhhcCCcEEEEcccCCh---
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRM--DTLNDLLAASDVISLHCAVTD--- 230 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-~~~~---~g~~~~--~sL~eLL~~sDvVil~lPlT~--- 230 (620)
+.++++.|+|.|.+|.++|+.|...|+.|.++|....... .... .++... ..-+.++..+|+|+..--..+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 4688999999999999999999999999999997654311 0111 233221 112344567999988543332
Q ss_pred hhH-------hhcC-HHHhhc-cC---CCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 231 ETI-------QIIN-AECLQH-IK---PGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 231 ~T~-------~lI~-~~~L~~-MK---~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
... .++. .+.+.. ++ ...|-|--+-|+.--..-+...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 211 1222 233333 32 2345555556888777777788865
No 396
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=91.70 E-value=0.68 Score=50.21 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=48.8
Q ss_pred eecCcEEEEEeC---ChhhHHHHHHHh-hCCCEEEEECCCCCCCCccc-------cCCceecCCHHhhhcCCcEEEEc
Q 007040 159 RCRGLVLGIVGR---SASARALATRSL-SFKMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLH 225 (620)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~Lk-afG~~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~sDvVil~ 225 (620)
.+.|.+|++||- +++..+++..|. -+|++|.+..|..-.....+ ...+....++++.++.+|||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 368999999999 577888888766 44999999998653211111 11234567999999999999983
No 397
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.66 E-value=0.29 Score=51.87 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=56.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCH-HhhhcCCcEEEEcccCChhhHhhcCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL-NDLLAASDVISLHCAVTDETIQIINAE 239 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL-~eLL~~sDvVil~lPlT~~T~~lI~~~ 239 (620)
.|.+|.|.|.|.+|...+..++++|++|++.+++....+.....|.....+. +..-...|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 4889999999999999999999999999999887654332233333221111 11112346665554432 1 12 23
Q ss_pred HhhccCCCcEEEEcCC
Q 007040 240 CLQHIKPGAFLVNTGS 255 (620)
Q Consensus 240 ~L~~MK~gAiLINvgR 255 (620)
.++.++++..++.+|-
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 5666777777777653
No 398
>PRK06128 oxidoreductase; Provisional
Probab=91.63 E-value=0.39 Score=50.00 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=31.8
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
..+.|+++.|.|. |.||+++|+.|...|++|++..+.
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 3578999999975 899999999999999999877654
No 399
>PRK14851 hypothetical protein; Provisional
Probab=91.62 E-value=0.28 Score=57.78 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=33.3
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|++.+|+|||+|.+|..+|..|...|. ++..+|..
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 357899999999999999999999999998 67777754
No 400
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.57 E-value=0.32 Score=54.27 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=68.1
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----ccccCCceec--CCHHhhhcCCcEEEEccc---C
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRM--DTLNDLLAASDVISLHCA---V 228 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~-----~~~~~g~~~~--~sL~eLL~~sDvVil~lP---l 228 (620)
.+.++++.|||.|.+|.++|..|+..|++|.++|....... .....|+... .... +...+|+|++..- .
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcCCC
Confidence 46789999999999999999999999999999996542111 0111233221 1121 3456899998763 3
Q ss_pred Chh-----hHh--hcCH-HHh-hccCC----CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 229 TDE-----TIQ--IINA-ECL-QHIKP----GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 229 T~~-----T~~--lI~~-~~L-~~MK~----gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++. ..+ +++. +.+ ..+.+ ..|-|--+-|+.--..=|...|+.
T Consensus 92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 332 111 2333 232 33422 234455556888777777777765
No 401
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.45 E-value=0.42 Score=49.62 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=46.3
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc---------------cccCCceecCCHHhhhcCCcEEEE
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV---------------TFPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---------------~~~~g~~~~~sL~eLL~~sDvVil 224 (620)
.|++|.|.| .|-||+.+++.|...|++|.++++....... ...........+++++..+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 468899999 6999999999999999999988876432110 000011122346777888898877
Q ss_pred ccc
Q 007040 225 HCA 227 (620)
Q Consensus 225 ~lP 227 (620)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 664
No 402
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.43 E-value=0.68 Score=47.48 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=45.7
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----ccCCceecCCHHhhh------cC-CcEEEEcccCC
Q 007040 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT----FPSAARRMDTLNDLL------AA-SDVISLHCAVT 229 (620)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~~g~~~~~sL~eLL------~~-sDvVil~lPlT 229 (620)
|.|+|. |.||+.+++.|...|++|.+..|++...... ........++|.+++ .. +|.|+++.|..
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 667776 9999999999999999999999887432210 111112234566666 45 89999888854
No 403
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=91.40 E-value=2.1 Score=44.75 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=103.8
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCC-----------EEEEECCCCC---CCC------cc---ccCCceecCCHHhh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKM-----------SVLYFDVPEG---KGK------VT---FPSAARRMDTLNDL 215 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~-----------~V~~~dr~~~---~~~------~~---~~~g~~~~~sL~eL 215 (620)
.|.+.+|.|+|.|..|-.+|+.|...++ +++.+|+..- ... .. +........+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 4788999999999999999999987776 6999998741 100 00 11111233589999
Q ss_pred hc--CCcEEEEcccCChhhHhhcCHHHhhccC---CCcEEEEcCCChhhcHHHHHHHHHc--C-CcceeEeecCCCCCCC
Q 007040 216 LA--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLID--G-TLAGCALDGAEGPQWM 287 (620)
Q Consensus 216 L~--~sDvVil~lPlT~~T~~lI~~~~L~~MK---~gAiLINvgRG~vVDe~AL~~AL~~--G-~I~GAaLDV~E~P~~~ 287 (620)
+. +.|+++=..- .-++|.++.+..|. +..++.=.|....-.|..-.++.+- | .|.+.+- |.++
T Consensus 102 v~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGs-----pf~p 172 (254)
T cd00762 102 VEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGS-----PFHP 172 (254)
T ss_pred HHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECC-----CCCC
Confidence 99 9999986432 24799999999998 9999999998776334333333332 3 2322111 2111
Q ss_pred C------ccccCCCcEEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 007040 288 E------AWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 288 ~------spL~~~pNVIlTPHiAg~T~-----ea~~~~~~~a~enL~~~L 326 (620)
. ...-+..|+++=|=++-... ..-++|.-.+++.|..+.
T Consensus 173 v~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v 222 (254)
T cd00762 173 VELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSV 222 (254)
T ss_pred cccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhC
Confidence 1 11225679999997654322 224677777777777754
No 404
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.29 E-value=0.39 Score=50.49 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.++.|.|.|.+|..++..++++|++|++.++...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~ 204 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPS 204 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 577899999999999999999999999999987753
No 405
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.24 E-value=0.73 Score=49.48 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=31.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|+|.|.||..++..++++|.+|++.+...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999999998887654
No 406
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.23 E-value=0.32 Score=51.02 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..++..++.+|++ |++.+++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 488999999999999999999999998 999887653
No 407
>PRK12862 malic enzyme; Reviewed
Probab=91.15 E-value=2.3 Score=50.87 Aligned_cols=181 Identities=16% Similarity=0.202 Sum_probs=118.7
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHh
Q 007040 103 LGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (620)
Q Consensus 103 rGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (620)
.+|+|.|..-.. +|=-+++-+|+.+|-. .+.+...+|.|.|.|.-|-.+|+.|.
T Consensus 160 ~~ip~f~DD~~G---Ta~v~la~l~~a~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~ 213 (763)
T PRK12862 160 MKIPVFHDDQHG---TAIIVAAALLNGLKLV-----------------------GKDIEDVKLVASGAGAAALACLDLLV 213 (763)
T ss_pred CCCceEecCccc---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEEChhHHHHHHHHHHH
Confidence 469999985433 3444566777766421 13478899999999999999999999
Q ss_pred hCCC---EEEEECCCCC----C-C--C---ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcE
Q 007040 183 SFKM---SVLYFDVPEG----K-G--K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (620)
Q Consensus 183 afG~---~V~~~dr~~~----~-~--~---~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAi 249 (620)
..|. +++.+|+..- . . . ..+... ....+|.|++..+|+++=.-- -++|+++.++.|.+..+
T Consensus 214 ~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~-~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~pi 287 (763)
T PRK12862 214 SLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK-TDARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPL 287 (763)
T ss_pred HcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh-cccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCE
Confidence 9999 8999997641 1 0 1 011111 123589999999999885432 47999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHc--CCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHH
Q 007040 250 LVNTGSSQLLDDCAVKQLLID--GTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVL 322 (620)
Q Consensus 250 LINvgRG~vVDe~AL~~AL~~--G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL 322 (620)
+.=.+.... |..-.++.+- |.|.+.+- ...| -+..|+++=|-++-.. ....++|.-.+++.|
T Consensus 288 ifalsNP~~--E~~p~~a~~~~~~~i~atGr--s~~p-------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 356 (763)
T PRK12862 288 IFALANPTP--EILPEEARAVRPDAIIATGR--SDYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAI 356 (763)
T ss_pred EEeCCCCcc--cCCHHHHHHhcCCEEEEECC--cCCC-------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHH
Confidence 999998764 2222223332 23433221 1112 1467899999754332 223467777777777
Q ss_pred HHHH
Q 007040 323 QTFF 326 (620)
Q Consensus 323 ~~~L 326 (620)
..+.
T Consensus 357 a~~~ 360 (763)
T PRK12862 357 AELA 360 (763)
T ss_pred Hhcc
Confidence 7753
No 408
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=91.04 E-value=0.51 Score=50.04 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=54.0
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEE-ECCCCCCCC--ccccCCce-ecCCHHhhhc--CCcEEEEcccCChhhHhh
Q 007040 163 LVLGIVGRSASARALATRSLS-FKMSVLY-FDVPEGKGK--VTFPSAAR-RMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fG~~V~~-~dr~~~~~~--~~~~~g~~-~~~sL~eLL~--~sDvVil~lPlT~~T~~l 235 (620)
.+|||||.|.||+..+..+.. -++++.+ +|+.+.... .+...|+. ...+.+++++ +.|+|+++.|.... .-
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H--~e 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH--AR 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH--HH
Confidence 369999999999988766664 4677664 566654321 12223443 3457888886 57889999996532 21
Q ss_pred cCHHHhhccCCCcEEEEcC
Q 007040 236 INAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvg 254 (620)
+ ....++.|..+|+-.
T Consensus 80 ~---a~~al~aGk~VIdek 95 (285)
T TIGR03215 80 H---ARLLAELGKIVIDLT 95 (285)
T ss_pred H---HHHHHHcCCEEEECC
Confidence 1 233345566665543
No 409
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=90.96 E-value=0.43 Score=51.00 Aligned_cols=157 Identities=9% Similarity=0.075 Sum_probs=85.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCCEEE-EECCCCCCC--CccccCCcee-cCCHHhhhc-----CCcEEEEcccCChh
Q 007040 162 GLVLGIVGRSASARALATRSLS-FKMSVL-YFDVPEGKG--KVTFPSAARR-MDTLNDLLA-----ASDVISLHCAVTDE 231 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG~~V~-~~dr~~~~~--~~~~~~g~~~-~~sL~eLL~-----~sDvVil~lPlT~~ 231 (620)
..++||||.|.||...+..+.. -++++. ++|+++... ..+...|+.. ..+++++++ +.|+|+.+.|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 3579999999999997766664 466665 456655321 1122234443 467899985 58899999985422
Q ss_pred hHhhcCHHHhhccCCCcEEEEcC---CChh----hcHHHHHHHHHcCCcceeEeecCCCCCC-CCcccc--CCCcEEE--
Q 007040 232 TIQIINAECLQHIKPGAFLVNTG---SSQL----LDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVR--EMPNVLI-- 299 (620)
Q Consensus 232 T~~lI~~~~L~~MK~gAiLINvg---RG~v----VDe~AL~~AL~~G~I~GAaLDV~E~P~~-~~spL~--~~pNVIl-- 299 (620)
.- -.....+.|..+|+-. +|++ |+.+++.++ .+-++..+.--.+- |.. .=+|+- ..-.|+-
T Consensus 84 --~e---~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~-~~~~iia~p~~ati-~~v~Al~~v~~~~~~eIvat~ 156 (302)
T PRK08300 84 --VR---HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDA-PNVNMVTCGGQATI-PIVAAVSRVAPVHYAEIVASI 156 (302)
T ss_pred --HH---HHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcc-cCCCEEECccHHHH-HHHHHhcccCcCceeeeeeee
Confidence 11 1233456788888876 4555 444444222 11122211111000 100 000111 2334442
Q ss_pred cCC-CCCCcHHHHHHHHHHHHHHHHHH
Q 007040 300 LPR-SADYSEEVWMEIRDKAISVLQTF 325 (620)
Q Consensus 300 TPH-iAg~T~ea~~~~~~~a~enL~~~ 325 (620)
.-- .+..|....+++.+....-|+.|
T Consensus 157 ~s~s~g~gtr~nidE~~~~t~~~~~~~ 183 (302)
T PRK08300 157 ASKSAGPGTRANIDEFTETTSRAIEKV 183 (302)
T ss_pred hhhccCCcccccHHHHHHHHHHHHHHh
Confidence 112 25566888888888888888885
No 410
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.87 E-value=0.44 Score=48.33 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=34.0
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468899999985 99999999999999999999998753
No 411
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=90.87 E-value=1.5 Score=49.28 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=63.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-------CC--EEEEECCCCCCCC--------c--cccCCceecCCHHhhhcCCcEE
Q 007040 163 LVLGIVGR-SASARALATRSLSF-------KM--SVLYFDVPEGKGK--------V--TFPSAARRMDTLNDLLAASDVI 222 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-------G~--~V~~~dr~~~~~~--------~--~~~~g~~~~~sL~eLL~~sDvV 222 (620)
.+|+|||. |.+|..+|-.|... |. +++.+|.+..... . .+...+....+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 46999999 99999999998765 44 7899998765433 0 0111222123445788999999
Q ss_pred EEcccCC--h-hh--------HhhcC--HHHhhc-cCCCcEEEEcCCChhhcHHHHH
Q 007040 223 SLHCAVT--D-ET--------IQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVK 265 (620)
Q Consensus 223 il~lPlT--~-~T--------~~lI~--~~~L~~-MK~gAiLINvgRG~vVDe~AL~ 265 (620)
++..-.. + .+ ..++. ...+.. -.|++++|.++ ..+|.-+.+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v 235 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI 235 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence 9987542 1 11 12221 123444 47899999887 344544433
No 412
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=90.82 E-value=0.4 Score=51.68 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=24.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCC----CEEEEECC
Q 007040 164 VLGIVGRSASARALATRSLSFK----MSVLYFDV 193 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG----~~V~~~dr 193 (620)
+|||+|+|+||+.+.+.|...+ ++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 4899999999999999988653 78777754
No 413
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.74 E-value=0.78 Score=50.55 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=53.6
Q ss_pred ecCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEccc
Q 007040 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lP 227 (620)
..|++|+|+|+. .-+..+++.|...|.+|.+|||...... ..+....+++.+++..||+|++..-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 478999999993 5677999999999999999999854332 2367778999999999999998664
No 414
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.73 E-value=0.38 Score=49.67 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=45.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCc-------eecCCHHhhhcCCcEEEEccc
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCA 227 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~sDvVil~lP 227 (620)
+++.|+| .|.||+.+++.|...|++|++++++..........++ ...+.+.+++..+|+|+.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 3688998 5999999999999999999999987643221111111 112346677888998887764
No 415
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=90.73 E-value=1.8 Score=46.02 Aligned_cols=107 Identities=13% Similarity=0.054 Sum_probs=71.1
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCChhhHhhcC
Q 007040 162 GLVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT~~T~~lI~ 237 (620)
..+|.|+|. |.+|..+.+.|..+|++ |+.++|..... .-.|...+.++.++-.. .|++++++|.. .+...+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~---~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l~ 83 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAIL 83 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCC---eEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHHH
Confidence 456888887 77999999999999885 44567652011 12456667899999887 89999999943 3334432
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
+..+.=-+.++++..|-+ +-++..|.+..+++.+.
T Consensus 84 -e~~~~gvk~avI~s~Gf~-~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 84 -EAIDAGIDLIVCITEGIP-VLDMLEVKAYLERKKTR 118 (291)
T ss_pred -HHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCE
Confidence 233322335556555543 45556888888887665
No 416
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=90.72 E-value=0.82 Score=49.15 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=51.9
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHH
Q 007040 163 LVLGIVG-RSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~ 240 (620)
.+|+||| .|-.|+++.+.|..... ++.....+.... . ...+++++++|+||+++|.... ..+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~---~-------~~~~~~~~~~DvvFlalp~~~s-~~~----- 66 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD---A-------AARRELLNAADVAILCLPDDAA-REA----- 66 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc---c-------cCchhhhcCCCEEEECCCHHHH-HHH-----
Confidence 4699999 89999999999987653 665554332211 0 2345667889999999995522 222
Q ss_pred hhc-cCCCcEEEEcCC
Q 007040 241 LQH-IKPGAFLVNTGS 255 (620)
Q Consensus 241 L~~-MK~gAiLINvgR 255 (620)
... .+.|+.+||.+.
T Consensus 67 ~~~~~~~g~~VIDlSa 82 (313)
T PRK11863 67 VALIDNPATRVIDAST 82 (313)
T ss_pred HHHHHhCCCEEEECCh
Confidence 222 246899999874
No 417
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=90.70 E-value=0.7 Score=44.19 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=56.4
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC--
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~-- 237 (620)
..|++|++||+= +++++.|+..+.+|+++|+++...... .+.......++++++||+|++.-. -++|
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs------TlvN~T 77 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS------TLVNGT 77 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH------HCCTTT
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee------eeecCC
Confidence 478999999961 247888888899999999988443211 111234567899999999997643 1333
Q ss_pred -HHHhhccCCCcEEEEcCC
Q 007040 238 -AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 238 -~~~L~~MK~gAiLINvgR 255 (620)
...|++.++++.+|=+|-
T Consensus 78 i~~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 78 IDDILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHHHTTTSSEEEEESC
T ss_pred HHHHHHhCccCCeEEEEec
Confidence 346777777777777663
No 418
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.68 E-value=0.76 Score=49.47 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=53.6
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccCCc-eecCCHH-hhhcCCcEEEEcccCChhhHhh
Q 007040 162 GLVLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~sDvVil~lPlT~~T~~l 235 (620)
+++|+||| .|.+|+.+.+.|...|+ ++.++.+.........-.+. ....+++ ..+..+|+|++++|.. .+..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 35799997 59999999999998665 44666544333221111111 1111222 3457899999999854 23333
Q ss_pred cCHHHhhccCCCcEEEEcCC
Q 007040 236 INAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgR 255 (620)
.. ..++.|+++|+.+.
T Consensus 80 ~~----~~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 AP----KAAAAGAVVIDNSS 95 (334)
T ss_pred HH----HHHhCCCEEEECCc
Confidence 22 12356889998874
No 419
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.66 E-value=0.83 Score=51.05 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=45.4
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----cc-CCc--eecCCHHhhhcCCcEEEEcc
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FP-SAA--RRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~-~g~--~~~~sL~eLL~~sDvVil~l 226 (620)
.-.+++|.|.| .|-||+.+++.|...|.+|+++|+........ +. ... ...+-++.++..+|+|+-+.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlA 191 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLA 191 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEee
Confidence 34779999998 69999999999999999999998643211100 00 011 12233455666789887655
No 420
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.64 E-value=0.26 Score=45.58 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=30.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~ 195 (620)
+.++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 35789999999999999999999999 899999764
No 421
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=90.53 E-value=0.63 Score=53.31 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=87.0
Q ss_pred eecCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcC
Q 007040 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
.+.|++..+||-..| |..+|..|+....+|..+.... .+|.+.+.++|+|+.++--. +++-
T Consensus 159 ~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT--------------~~lae~v~~ADIvIvAiG~P----efVK 220 (935)
T KOG4230|consen 159 FVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT--------------RNLAEKVSRADIVIVAIGQP----EFVK 220 (935)
T ss_pred ccccceeEEEecccccCChHHHHHHhcCceEEEecCCC--------------ccHHHHhccCCEEEEEcCCc----ceee
Confidence 478999999999875 9999999999999999886533 37889999999999998643 3443
Q ss_pred HHHhhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceeEeecCCCCCCCCccccCCCcEEEcCCCCCCcHHHHHHHHHH
Q 007040 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDK 317 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T~ea~~~~~~~ 317 (620)
. .++|||+++|++|---+-|... ++|.- +.=||--+... +. -=.|||-=+|.-+=+..-+.+.
T Consensus 221 g---dWiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ak------ev-as~ITPVPGGVGPMTVAMLmqN 283 (935)
T KOG4230|consen 221 G---DWIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAK------EV-ASFITPVPGGVGPMTVAMLMQN 283 (935)
T ss_pred c---ccccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhh------hh-hhccccCCCCcchHHHHHHHHH
Confidence 3 4689999999999755544322 22322 34466322110 00 1247887666655443334444
Q ss_pred HHHHHHHHH
Q 007040 318 AISVLQTFF 326 (620)
Q Consensus 318 a~enL~~~L 326 (620)
+++.-++++
T Consensus 284 tveaAKR~r 292 (935)
T KOG4230|consen 284 TVEAAKRQR 292 (935)
T ss_pred HHHHHHHHH
Confidence 444444444
No 422
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=90.44 E-value=0.81 Score=49.62 Aligned_cols=89 Identities=11% Similarity=0.200 Sum_probs=55.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh--C-CCEEEEECCCCCCCCccccCC-ceecCCHHhh-hcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVGR-SASARALATRSLS--F-KMSVLYFDVPEGKGKVTFPSA-ARRMDTLNDL-LAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka--f-G~~V~~~dr~~~~~~~~~~~g-~~~~~sL~eL-L~~sDvVil~lPlT~~T~~ 234 (620)
.+.+|+|||. |-+|+.+.+.|.. | ..++..+......+......+ .....++++. +.++|+|++++|.. .
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~--- 78 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-A--- 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-H---
Confidence 4678999997 9999999999987 4 346666654433333111111 1122245554 37899999999954 2
Q ss_pred hcCHHHhhc-cCCCcEEEEcCC
Q 007040 235 IINAECLQH-IKPGAFLVNTGS 255 (620)
Q Consensus 235 lI~~~~L~~-MK~gAiLINvgR 255 (620)
..+.... .+.|+.+|+.+.
T Consensus 79 --s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 79 --SAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred --HHHHHHHHHHCCCEEEECCh
Confidence 2222222 256999999883
No 423
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.38 E-value=0.62 Score=48.47 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=33.8
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
..+.|+++.|.| .|.||..+|+.|.+.|++|+.+++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467899999998 48899999999999999999998765
No 424
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=90.19 E-value=1 Score=48.91 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=52.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccCCc-eecCCHH-hhhcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~sDvVil~lPlT~~T~~ 234 (620)
...+|+||| .|.+|+.+.+.|...++ ++.++......+......+. ....+++ +.+..+|+|++++|.. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 456899997 58999999999987554 44444332222221111111 1112222 4458899999999965 2333
Q ss_pred hcCHHHhhccCCCcEEEEcC
Q 007040 235 IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvg 254 (620)
+.. + ..+.|+.+|+.+
T Consensus 85 ~~~-~---~~~~g~~VIDlS 100 (344)
T PLN02383 85 FGP-I---AVDKGAVVVDNS 100 (344)
T ss_pred HHH-H---HHhCCCEEEECC
Confidence 322 1 124699999988
No 425
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=90.14 E-value=1.9 Score=40.75 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCC---cccc-CCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 175 RALATRSLSFKMSVLYFDVPEGKGK---VTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 175 ~~vA~~LkafG~~V~~~dr~~~~~~---~~~~-~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
=..++.|...|++|++=.-...... ..+. .|+....+-++++++||+|+-.=|.+ .+.++.|++|.++
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l 88 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence 4567788888999998765432211 2222 35566666779999999999887765 5578999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceeEeecCC
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~I~GAaLDV~E 282 (620)
|-..... ....+++.|.+.++...++|-..
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~ip 118 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALELIP 118 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence 9876654 58889999999999877777644
No 426
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.12 E-value=0.52 Score=39.57 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=31.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~ 198 (620)
++.|||-|.+|-.+|..|+.+|.+|..+.+...-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 47899999999999999999999999999877543
No 427
>PRK04148 hypothetical protein; Provisional
Probab=90.05 E-value=0.35 Score=45.90 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=46.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee-----cCCHHhhhcCCcEEEEcccCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~~sDvVil~lPlT 229 (620)
.++++.+||+| -|..+|..|...|++|++.|.++.........+... ...--++-..+|+|--.-|..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 56789999999 899999999999999999999875433111111110 111224566777776666633
No 428
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.98 E-value=0.44 Score=50.60 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=32.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..++..+++.|.+|++.+++..
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 488999999999999999999999999999987653
No 429
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.91 E-value=0.26 Score=51.72 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=44.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHH-hh-hcCCcEEEEcccCC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN-DL-LAASDVISLHCAVT 229 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~-eL-L~~sDvVil~lPlT 229 (620)
++++.|+|.|..|++++..|...|+ +|++++|+.......... .. .+.. ++ ...+|+||++.|..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~-~~--~~~~~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL-YG--YEWRPDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-hC--CcchhhcccccCCEEEECCccc
Confidence 4589999999999999999999998 699999987443311100 00 0111 11 24578888888854
No 430
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.91 E-value=0.74 Score=49.77 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=52.0
Q ss_pred EEEEEe-CChhhHHHHHHHhhCCCE---EEEECCCCCCCCccccCCc-eecCCH-HhhhcCCcEEEEcccCChhhHhhcC
Q 007040 164 VLGIVG-RSASARALATRSLSFKMS---VLYFDVPEGKGKVTFPSAA-RRMDTL-NDLLAASDVISLHCAVTDETIQIIN 237 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~LkafG~~---V~~~dr~~~~~~~~~~~g~-~~~~sL-~eLL~~sDvVil~lPlT~~T~~lI~ 237 (620)
+|+||| .|.+|+.+++.|...++. +.++.+...........+. ....++ .+.+..+|+|++++|.. .+..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 489999 899999999999986664 3444444333221111111 111122 23457899999999955 222221
Q ss_pred HHHhhccCCCcEEEEcCC
Q 007040 238 AECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 238 ~~~L~~MK~gAiLINvgR 255 (620)
.. ..+.|+++|+.+.
T Consensus 79 ~~---~~~~G~~VID~ss 93 (339)
T TIGR01296 79 PK---AAKCGAIVIDNTS 93 (339)
T ss_pred HH---HHHCCCEEEECCH
Confidence 11 2356888998874
No 431
>PRK12742 oxidoreductase; Provisional
Probab=89.88 E-value=1.1 Score=44.21 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=30.7
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDV 193 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr 193 (620)
.+.|+++.|.|. |.||+.+|+.|...|++|+...+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 367899999985 89999999999999999987754
No 432
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.82 E-value=1.8 Score=48.02 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=66.9
Q ss_pred eecC-cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCC-ccccCCceec---CCHHhhhcCCcEEEEcc--cC-
Q 007040 159 RCRG-LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGK-VTFPSAARRM---DTLNDLLAASDVISLHC--AV- 228 (620)
Q Consensus 159 ~L~G-ktVGIIGlG~IG~~vA~~Lkaf--G~~V~~~dr~~~~~~-~~~~~g~~~~---~sL~eLL~~sDvVil~l--Pl- 228 (620)
++.+ ++|.|||+|.+|.+.++.|... |+.|.++|....... .....++... .+. +.+.++|+|+..- |.
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~ 81 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNL-EWLLEADLVVTNPGIALA 81 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCCh-HHhccCCEEEECCCCCCC
Confidence 3566 7899999999999999999987 689999997543211 1122233321 122 3457899887754 32
Q ss_pred ChhhH-------hhcCH-HHhh-ccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 229 TDETI-------QIINA-ECLQ-HIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 229 T~~T~-------~lI~~-~~L~-~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.|+.. .++.. +++. .++...+-|--+-|+.--..-|...|+.
T Consensus 82 ~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 82 TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 22211 12322 3333 3443444455456888777777777764
No 433
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.80 E-value=1.4 Score=47.30 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=55.6
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEEEEECCCCCCCC---cccc-----C--CceecC-CHHhhhcCCcEEEEcc--c
Q 007040 163 LVLGIVGRSASARALATRSLS--FKMSVLYFDVPEGKGK---VTFP-----S--AARRMD-TLNDLLAASDVISLHC--A 227 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fG~~V~~~dr~~~~~~---~~~~-----~--g~~~~~-sL~eLL~~sDvVil~l--P 227 (620)
++|+|||.|.||+.+|-.|.. ++-++..||....... .... . ...... .=.+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 479999999999999999963 4558999998843222 0011 1 111111 1146778999999998 6
Q ss_pred CChh-hHh-hc--CH-------HHhhccCCCcEEEEcC
Q 007040 228 VTDE-TIQ-II--NA-------ECLQHIKPGAFLVNTG 254 (620)
Q Consensus 228 lT~~-T~~-lI--~~-------~~L~~MK~gAiLINvg 254 (620)
..|. ||. ++ |. ..+..-.|+++++.++
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 5553 333 22 22 2233334567777654
No 434
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.79 E-value=0.42 Score=49.71 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=55.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCCce---ecC--CHH--h--hhcCCcEEEEcccCCh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAAR---RMD--TLN--D--LLAASDVISLHCAVTD 230 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g~~---~~~--sL~--e--LL~~sDvVil~lPlT~ 230 (620)
.|.+|.|+|.|.+|+.++..+++.|++ |++.+++..........+.. ... +.. . .....|+|+.+++..+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 578899999999999999999999998 88887765322211001110 000 110 0 1134677776665221
Q ss_pred hhHhhcCHHHhhccCCCcEEEEcCCCh
Q 007040 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (620)
Q Consensus 231 ~T~~lI~~~~L~~MK~gAiLINvgRG~ 257 (620)
.....+..|+++..+|+++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 1233456677777777776543
No 435
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=89.74 E-value=3.9 Score=43.13 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCCcc-----ccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCc
Q 007040 174 ARALATRSLSFKMSVLYFDVPEGKGKVT-----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (620)
Q Consensus 174 G~~vA~~LkafG~~V~~~dr~~~~~~~~-----~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gA 248 (620)
|..||-.+...|+.|+..+|+..-.... ...|+...++-.+..+.+.+.++..|-...|.++. .+.+.+++.||
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 6788888889999999999987443311 23466667777788899999999999998888876 56899999999
Q ss_pred EEEEcCCChhhcHHHHHHHH
Q 007040 249 FLVNTGSSQLLDDCAVKQLL 268 (620)
Q Consensus 249 iLINvgRG~vVDe~AL~~AL 268 (620)
++.|+...+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999875543 344444
No 436
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.73 E-value=0.58 Score=49.77 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=47.9
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cc--cCCc-------eecCCHHhhhcCCcEEEE
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV---TF--PSAA-------RRMDTLNDLLAASDVISL 224 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~---~~--~~g~-------~~~~sL~eLL~~sDvVil 224 (620)
++..+++|.|.| .|-||+.+++.|...|++|++.++....... .. ...+ .....+.+++...|+|+.
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 567899999998 6999999999999999999998776432110 00 0001 112235566777898776
Q ss_pred cccC
Q 007040 225 HCAV 228 (620)
Q Consensus 225 ~lPl 228 (620)
+...
T Consensus 86 ~A~~ 89 (353)
T PLN02896 86 VAAS 89 (353)
T ss_pred CCcc
Confidence 6543
No 437
>PRK12861 malic enzyme; Reviewed
Probab=89.73 E-value=1.3 Score=53.00 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=116.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCCCCcceeecCcEEEEEeCChhhHHHHHHHhh
Q 007040 104 GLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLS 183 (620)
Q Consensus 104 GI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lka 183 (620)
.|++.|..-.. +|=-+++-+|+.+|-. .+.+...+|.|.|.|.-|..+|+.|..
T Consensus 157 ~ipvf~DD~qG---Ta~v~lA~llnal~~~-----------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~ 210 (764)
T PRK12861 157 KIPVFHDDQHG---TAITVSAAFINGLKVV-----------------------GKSIKEVKVVTSGAGAAALACLDLLVD 210 (764)
T ss_pred CCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhHcEEEEECHhHHHHHHHHHHHH
Confidence 78998884433 3334566777776521 134788999999999999999999999
Q ss_pred CCC---EEEEECCCC-----CCC--C---ccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHhhccCCCcEE
Q 007040 184 FKM---SVLYFDVPE-----GKG--K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (620)
Q Consensus 184 fG~---~V~~~dr~~-----~~~--~---~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiL 250 (620)
.|. +++.+|+.. ... . ..+... ....+|.|++..+|+++=. . +-++|+++.+..|.+..++
T Consensus 211 ~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~-~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PII 284 (764)
T PRK12861 211 LGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE-TDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLI 284 (764)
T ss_pred cCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh-cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEE
Confidence 999 799999764 110 0 011111 1235899999999987643 2 2489999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCC-cceeEeecCCCCCCCCccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHHHH
Q 007040 251 VNTGSSQLLDDCAVKQLLIDGT-LAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVLQT 324 (620)
Q Consensus 251 INvgRG~vVDe~AL~~AL~~G~-I~GAaLDV~E~P~~~~spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL~~ 324 (620)
.=.+.....-..+.+.. ..|. |.+. -....++ +..|+++=|-++-.. ....++|.-.+++.|..
T Consensus 285 FaLsNPtpE~~pe~a~~-~~g~aivaT-----Grs~~pn----Q~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~ 354 (764)
T PRK12861 285 LALANPTPEIFPELAHA-TRDDVVIAT-----GRSDYPN----QVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAG 354 (764)
T ss_pred EECCCCCccCCHHHHHh-cCCCEEEEe-----CCcCCCC----ccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHh
Confidence 99998764211121122 2233 3211 1111111 567999999754322 22346777777777777
Q ss_pred HH
Q 007040 325 FF 326 (620)
Q Consensus 325 ~L 326 (620)
+.
T Consensus 355 ~~ 356 (764)
T PRK12861 355 LA 356 (764)
T ss_pred hC
Confidence 53
No 438
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=89.72 E-value=1 Score=48.27 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=49.9
Q ss_pred eecCcEEEEEe---CChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccC---CceecCCHHhhhcCCcEEEE
Q 007040 159 RCRGLVLGIVG---RSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPS---AARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 159 ~L~GktVGIIG---lG~IG~~vA~~LkafG~~V~~~dr~~~~~~----~~~~~---g~~~~~sL~eLL~~sDvVil 224 (620)
++.|.+|+|+| +|+...+.+..|..||.+|..+.|..-... ..... .....+.+++.+.++||+.+
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 37899999999 899999999999999999999998753331 11111 12334556669999999954
No 439
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=89.71 E-value=1.1 Score=51.40 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=47.1
Q ss_pred ecCcEEEEEeC---ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc-----cCC--ceecCCHHhhhcCCcE
Q 007040 160 CRGLVLGIVGR---SASARALATRSLSFK-MSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDV 221 (620)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG-~~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~sDv 221 (620)
+.|.+|++||- +++..+++..|..|| ++|.+..|..-.....+ ..| +....++++.++.||+
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 67999999998 588999999999998 99999998653211111 112 3456789999999995
No 440
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.70 E-value=0.59 Score=46.88 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.6
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 468999999985 9999999999999999999999875
No 441
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.69 E-value=1.1 Score=49.95 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=61.9
Q ss_pred eecCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHh-hhcCCcEEEEccc
Q 007040 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND-LLAASDVISLHCA 227 (620)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~e-LL~~sDvVil~lP 227 (620)
.+.|++|+|+|+ ..-+..+++.|...|.+|.+|||...........+. ..+++ .+..||+|+++..
T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~---~~~~~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGI---IPVSEVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCc---ccchhhhhcCCCEEEEccC
Confidence 478999999998 567899999999999999999998432110000111 11222 3678999999998
Q ss_pred CChhhHhhcCHHHhh-ccCCCcEEEEcCCChh
Q 007040 228 VTDETIQIINAECLQ-HIKPGAFLVNTGSSQL 258 (620)
Q Consensus 228 lT~~T~~lI~~~~L~-~MK~gAiLINvgRG~v 258 (620)
..+ -+ -++-+.+. .|+...++|+ +|+-+
T Consensus 388 h~~-f~-~~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 388 HQQ-FK-QMGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred CHH-hh-cCCHHHHHHhcCCCCEEEE-CCCCC
Confidence 653 22 24444444 4564568888 45544
No 442
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=89.61 E-value=0.82 Score=49.62 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=32.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|.|.|.||..++..++++|++|++.++..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999987654
No 443
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.59 E-value=1.1 Score=47.50 Aligned_cols=33 Identities=18% Similarity=-0.014 Sum_probs=29.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++|.|.| .|-||+.+++.|...|++|+++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 4677887 59999999999999999999998765
No 444
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=89.56 E-value=0.72 Score=51.70 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=51.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC------EEEEECCCCCCCC---cc--c---cCCce----ecCCHHhhhcCCcEEEEc
Q 007040 164 VLGIVGRSASARALATRSLSFKM------SVLYFDVPEGKGK---VT--F---PSAAR----RMDTLNDLLAASDVISLH 225 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~------~V~~~dr~~~~~~---~~--~---~~g~~----~~~sL~eLL~~sDvVil~ 225 (620)
+|.|||.|.+|.++++.|...|. ++.++|...-... .. + ..|.. ....+.++-....+....
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 47899999999999999999988 8999997642211 00 0 00110 111233444455555555
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEc
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNT 253 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINv 253 (620)
...+++|..+++.+.+... .++||+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~---DvVi~a 105 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKL---DGVANA 105 (435)
T ss_pred cccChhhhhhhhHHHhcCC---CEEEEC
Confidence 5555666666655555433 355554
No 445
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.54 E-value=1.1 Score=48.35 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=50.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCC-CCCCcc---ccC-----------Cce-ecCCHHhhhcCCcEEEE
Q 007040 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVPE-GKGKVT---FPS-----------AAR-RMDTLNDLLAASDVISL 224 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-~~V~~~dr~~-~~~~~~---~~~-----------g~~-~~~sL~eLL~~sDvVil 224 (620)
.+|+|+| .|.||+.+++.|..+. +++.++..+. ...... .+. ... ...+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 5799998 9999999999998764 4888873222 121110 000 001 1123444 478999999
Q ss_pred cccCChhhHhhcCHHHhhcc-CCCcEEEEcC
Q 007040 225 HCAVTDETIQIINAECLQHI-KPGAFLVNTG 254 (620)
Q Consensus 225 ~lPlT~~T~~lI~~~~L~~M-K~gAiLINvg 254 (620)
++|.... ..++ ..+ +.|..+|+.+
T Consensus 83 a~p~~~s-~~~~-----~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVA-GEVE-----EEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhHH-HHHH-----HHHHHCCCEEEECC
Confidence 9996522 2222 222 3567677665
No 446
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=89.51 E-value=0.81 Score=49.27 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=42.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCce--ecCC---HHhhhc--CCcEEEEc
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDT---LNDLLA--ASDVISLH 225 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~--~~~s---L~eLL~--~sDvVil~ 225 (620)
+|||||-|..|..+++.++.+|++|+++|+++......+.+... ...+ +.+++. ++|+|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 58999999999999999999999999999876433211221111 1123 444555 58887643
No 447
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.47 E-value=0.57 Score=51.27 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=33.5
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
...|++|.|+|. |.||+.+++.|...|++|++++|+..
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 457889999985 99999999999999999999998753
No 448
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.46 E-value=0.6 Score=50.40 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=54.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-CCceecCCH---------Hhhh--cCCcEEEEcccC
Q 007040 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTL---------NDLL--AASDVISLHCAV 228 (620)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~-~g~~~~~sL---------~eLL--~~sDvVil~lPl 228 (620)
+.++.|+|.|.||...+..++.+|. +|++.|++....+.+.. .+.....+. .++. ..+|+++-|..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999999999999999997 78888887755442222 122211111 1222 23777777776
Q ss_pred ChhhHhhcCHHHhhccCCCcEEEEcCC
Q 007040 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 229 T~~T~~lI~~~~L~~MK~gAiLINvgR 255 (620)
++. .+ ...+...+++..++.+|-
T Consensus 248 ~~~---~~-~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 SPP---AL-DQALEALRPGGTVVVVGV 270 (350)
T ss_pred CHH---HH-HHHHHHhcCCCEEEEEec
Confidence 222 11 234556666666666653
No 449
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.43 E-value=0.71 Score=45.73 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=33.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.++++.|+|. |.||..+++.|...|++|++++|+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67889999985 89999999999999999999999863
No 450
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=89.30 E-value=1.3 Score=47.58 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=52.3
Q ss_pred EEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCccccCCceecCCHHhhhcCCcEEEEcccCChhhHhhcCHHHh
Q 007040 164 VLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (620)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L 241 (620)
+|+|+| .|-+|.++.++|... .+++........ +. ..+.++++.++|+|++++|.. ....+.. ..
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~~-----~~~~~~~~~~~D~vFlalp~~-~s~~~~~-~~- 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----KD-----AAERAKLLNAADVAILCLPDD-AAREAVS-LV- 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----cC-----cCCHhHhhcCCCEEEECCCHH-HHHHHHH-HH-
Confidence 689997 588999999999976 456666643321 10 124567888999999999955 2333321 11
Q ss_pred hccCCCcEEEEcCC
Q 007040 242 QHIKPGAFLVNTGS 255 (620)
Q Consensus 242 ~~MK~gAiLINvgR 255 (620)
...|+.+||.+-
T Consensus 70 --~~~g~~VIDlSa 81 (310)
T TIGR01851 70 --DNPNTCIIDAST 81 (310)
T ss_pred --HhCCCEEEECCh
Confidence 246889999873
No 451
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.30 E-value=0.53 Score=48.95 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=56.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee---cC--C-HHhhhcCCcEEEEcccCChhhHh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---MD--T-LNDLLAASDVISLHCAVTDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~---~~--s-L~eLL~~sDvVil~lPlT~~T~~ 234 (620)
.|.+|.|+|.|.+|+.+++.++++|++|++.+++..........+... .. . ........|+|+.++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 578899999999999999999999999999987764322111111100 00 0 0011134677776654321
Q ss_pred hcCHHHhhccCCCcEEEEcCC
Q 007040 235 IINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvgR 255 (620)
.....+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12445677888888888763
No 452
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.24 E-value=0.65 Score=49.50 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=32.9
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+++++|.|.| .|-||..+++.|...|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 36789999998 59999999999999999999999754
No 453
>PRK12937 short chain dehydrogenase; Provisional
Probab=89.21 E-value=1.5 Score=43.43 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=30.7
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCC
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
+.++++.|.| .|.||+.+|+.|...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 5788999998 5999999999999999999877654
No 454
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.15 E-value=0.65 Score=46.97 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=46.6
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--CCce----e----cCCHHhhh-cCCcEEEEcc
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAAR----R----MDTLNDLL-AASDVISLHC 226 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~--~g~~----~----~~sL~eLL-~~sDvVil~l 226 (620)
...+++|.|+| .|.||+.+++.|...|++|+++.|+......... .++. . ...+.+.+ ...|+|+++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 45788999999 5999999999999999999998876532111010 0111 0 11233445 5789999776
Q ss_pred cC
Q 007040 227 AV 228 (620)
Q Consensus 227 Pl 228 (620)
+.
T Consensus 94 g~ 95 (251)
T PLN00141 94 GF 95 (251)
T ss_pred CC
Confidence 54
No 455
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.05 E-value=0.48 Score=46.93 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=33.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.|+++.|+|. |.||..+|+.|...|++|+.++++.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999997 9999999999999999999999875
No 456
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.00 E-value=0.66 Score=46.96 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=56.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCccccCC-ceecCC-HHhh--hcCCcEEEEcccCChhhHhh
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSA-ARRMDT-LNDL--LAASDVISLHCAVTDETIQI 235 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~~~~~~~~g-~~~~~s-L~eL--L~~sDvVil~lPlT~~T~~l 235 (620)
.|.++.|.|.|.+|..++..++++|.+ |++.++...........+ ...... .+.. -...|+|+.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 578899999999999999999999999 999887643322111111 000000 1111 124677776655332 1
Q ss_pred cCHHHhhccCCCcEEEEcCCC
Q 007040 236 INAECLQHIKPGAFLVNTGSS 256 (620)
Q Consensus 236 I~~~~L~~MK~gAiLINvgRG 256 (620)
-...+..|+++..++++|-.
T Consensus 173 -~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 -LETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -HHHHHHHhcCCcEEEEEecc
Confidence 13456778888888887643
No 457
>PLN02427 UDP-apiose/xylose synthase
Probab=88.82 E-value=0.68 Score=49.96 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=47.1
Q ss_pred eeecCcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------cCCc-------eecCCHHhhhcCCcE
Q 007040 158 RRCRGLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAA-------RRMDTLNDLLAASDV 221 (620)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~Lkaf-G~~V~~~dr~~~~~~~~~-------~~g~-------~~~~sL~eLL~~sDv 221 (620)
+.+..++|.|.| .|-||+.+++.|... |++|+++++......... ...+ .....+.+++..+|+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 456778999998 699999999999987 599999997642211000 0011 112345677888998
Q ss_pred EEEcc
Q 007040 222 ISLHC 226 (620)
Q Consensus 222 Vil~l 226 (620)
|+-+.
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 87655
No 458
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.81 E-value=0.28 Score=48.83 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=52.9
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC--ccccCCc-------eecCCHHhhhcCCcEEEEcccCC-h---
Q 007040 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK--VTFPSAA-------RRMDTLNDLLAASDVISLHCAVT-D--- 230 (620)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~--~~~~~g~-------~~~~sL~eLL~~sDvVil~lPlT-~--- 230 (620)
|.|+|. |.+|+.+++.|..-+++|.+.-|...... .....|+ ...++|.++++.+|+|++++|.. +
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 678885 99999999999999999999988763211 0011122 12346778899999999999954 1
Q ss_pred -hhHhhcCHHHh
Q 007040 231 -ETIQIINAECL 241 (620)
Q Consensus 231 -~T~~lI~~~~L 241 (620)
....++++..=
T Consensus 81 ~~~~~li~Aa~~ 92 (233)
T PF05368_consen 81 EQQKNLIDAAKA 92 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhHHHhhhc
Confidence 24445555443
No 459
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.72 E-value=1.1 Score=45.30 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.4
Q ss_pred eeecCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCC
Q 007040 158 RRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVP 194 (620)
Q Consensus 158 ~~L~GktVGIIGlG---~IG~~vA~~LkafG~~V~~~dr~ 194 (620)
..+.|+++.|.|.+ .||+.+|+.|.+.|++|+..++.
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~ 41 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWT 41 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecc
Confidence 35889999999985 79999999999999999987643
No 460
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.72 E-value=1.2 Score=47.49 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=52.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCccccCCceecCCHHhhhc--CCcEEEEcccC--ChhhHh
Q 007040 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAV--TDETIQ 234 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~sDvVil~lPl--T~~T~~ 234 (620)
.|.+|.|+|.|.||..++..++. +| .+|++++++....+.....+... .++++.. ..|+|+-++.. ++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~~~~~--- 237 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGRGSQS--- 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCCccHH---
Confidence 58899999999999999988885 54 68999998764433211111111 1122212 25777766653 111
Q ss_pred hcCHHHhhccCCCcEEEEcC
Q 007040 235 IINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 235 lI~~~~L~~MK~gAiLINvg 254 (620)
.+ ...+..++++..+|.+|
T Consensus 238 ~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 238 AI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HH-HHHHHhCcCCcEEEEEe
Confidence 12 23466677777777664
No 461
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=88.71 E-value=1 Score=45.73 Aligned_cols=63 Identities=17% Similarity=0.038 Sum_probs=43.2
Q ss_pred EEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCcee--cCCHHhhhcCCcEEEEcccC
Q 007040 166 GIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR--MDTLNDLLAASDVISLHCAV 228 (620)
Q Consensus 166 GIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~--~~sL~eLL~~sDvVil~lPl 228 (620)
.|.| .|-||+.+++.|..-|++|++++|+.............. ...+.+.+..+|+|+.+...
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGE 67 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCC
Confidence 4565 699999999999999999999999875433211111111 13445667889998877753
No 462
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.71 E-value=0.55 Score=49.09 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=40.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhcC--CcEEEEcccCC
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--sDvVil~lPlT 229 (620)
|+|.|+| -|-+|+.+++.|...|++|+++++..-.. ...+.+.+++.+ .|+|+.|...+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl--------~d~~~~~~~~~~~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDL--------TDPEAVAKLLEAFKPDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-T--------TSHHHHHHHHHHH--SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCC--------CCHHHHHHHHHHhCCCeEeccceee
Confidence 5799999 69999999999999999999998763221 112345566554 79999987654
No 463
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.58 E-value=1.6 Score=47.65 Aligned_cols=88 Identities=17% Similarity=0.306 Sum_probs=53.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCE---EEEECCCCCCCCcc-cc-CCce-ecCCHHhhhcCCcEEEEcccCChhh
Q 007040 161 RGLVLGIVGR-SASARALATRSLS-FKMS---VLYFDVPEGKGKVT-FP-SAAR-RMDTLNDLLAASDVISLHCAVTDET 232 (620)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fG~~---V~~~dr~~~~~~~~-~~-~g~~-~~~sL~eLL~~sDvVil~lPlT~~T 232 (620)
++.+|||||. |..|+.+.+.|.. -.+. +..+......+... +. .... ...+.++ +.++|+|++++|.. ..
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence 4568999997 9999999999984 5665 54454333222211 11 1111 1123333 47899999999854 22
Q ss_pred HhhcCHHHhhccCCCcEEEEcC
Q 007040 233 IQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 233 ~~lI~~~~L~~MK~gAiLINvg 254 (620)
..+.. . ..+.|+.+|+.+
T Consensus 82 ~~~~~-~---~~~~G~~VID~S 99 (347)
T PRK06728 82 RQFVN-Q---AVSSGAIVIDNT 99 (347)
T ss_pred HHHHH-H---HHHCCCEEEECc
Confidence 22322 1 235689999987
No 464
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.56 E-value=0.65 Score=48.53 Aligned_cols=36 Identities=8% Similarity=-0.059 Sum_probs=31.7
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|.| .|.+|..+++.++.+|++|++.+++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~ 174 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE 174 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 578899999 599999999999999999998887653
No 465
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=88.45 E-value=0.72 Score=48.84 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=46.6
Q ss_pred eCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhhc-CCcEEEEccc
Q 007040 169 GRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCA 227 (620)
Q Consensus 169 GlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~sDvVil~lP 227 (620)
|.|-||+++..+|...|++|++..|++..........+...+.+.+... .+|+||+.+-
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG 65 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAG 65 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCC
Confidence 7899999999999999999999999986655444434444566777776 6999998764
No 466
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.40 E-value=0.68 Score=46.42 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=32.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
++.|+++.|.|. |.||+++|+.|...|++|+..+++.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 367999999985 7899999999999999999999875
No 467
>PRK06500 short chain dehydrogenase; Provisional
Probab=88.31 E-value=0.85 Score=45.22 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=32.8
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~ 40 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP 40 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence 357889999985 9999999999999999999998864
No 468
>PRK14852 hypothetical protein; Provisional
Probab=88.25 E-value=0.76 Score=56.01 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=33.3
Q ss_pred ceeecCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 007040 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (620)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~ 194 (620)
...|+..+|+|||+|.+|..+|..|...|. ++..+|..
T Consensus 327 Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 327 QRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 357999999999999999999999999998 67777754
No 469
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.13 E-value=0.37 Score=51.76 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=41.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccCCceecCCHH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN 213 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~~~~~~g~~~~~sL~ 213 (620)
.|.+++|+|+|.+|.+++.-++++|. +|+++|.++..-+.+...|+...-+..
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 68999999999999999999999999 899999988655544444444333333
No 470
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=88.12 E-value=0.84 Score=48.47 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=32.7
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.|++|.|.|. |-||..+++.|...|++|+++++...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 36789999984 99999999999999999999997654
No 471
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=88.12 E-value=0.92 Score=45.56 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=49.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----cCCceecCCHHhhhcCCcEEEEcccCC
Q 007040 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDLLAASDVISLHCAVT 229 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eLL~~sDvVil~lPlT 229 (620)
++|+|||. |.+|..+++-+..-|++|+++-|++....... ...+.....+.+.+..-|+||...-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 57999985 99999999999999999999999875543211 111222344557788899999877544
No 472
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=88.11 E-value=1.1 Score=46.81 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=45.9
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---------------ccCCceecCCHHhhhcCCcEEEE
Q 007040 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT---------------FPSAARRMDTLNDLLAASDVISL 224 (620)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~---------------~~~g~~~~~sL~eLL~~sDvVil 224 (620)
.|+++.|.| .|-||+.+++.|...|++|++..+........ ..........+.+++...|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 478899998 59999999999999999998876654321100 00011123346677888898887
Q ss_pred ccc
Q 007040 225 HCA 227 (620)
Q Consensus 225 ~lP 227 (620)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 764
No 473
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.11 E-value=3.2 Score=45.86 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=63.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccCCceecCCHHhhh--cCCcEEEEc--ccCC-hh---hHh
Q 007040 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL--AASDVISLH--CAVT-DE---TIQ 234 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL--~~sDvVil~--lPlT-~~---T~~ 234 (620)
++|.|+|+|..|.++|+.|+ .|+.|.++|....... ....++... + ++.+ .++|+|+.. +|.+ |+ .+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 35899999999999999999 9999999995532211 111133222 2 2233 468988765 3322 22 122
Q ss_pred hcCHH-HhhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 007040 235 IINAE-CLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 235 lI~~~-~L~~MK~gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
++..- .+..+.+..+-|--+-|+.--..-+...|..
T Consensus 77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 33332 3333223355565567888887778888875
No 474
>PRK05865 hypothetical protein; Provisional
Probab=88.10 E-value=2.1 Score=51.89 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=58.4
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc----cccCCceecCCHHhhhcCCcEEEEcccCChhh--Hhh
Q 007040 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRMDTLNDLLAASDVISLHCAVTDET--IQI 235 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~----~~~~g~~~~~sL~eLL~~sDvVil~lPlT~~T--~~l 235 (620)
++|.|.| .|.||+.+++.|.+.|++|++++++...... ...........+.+++..+|+|+.+....... .++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 4688998 5999999999999999999999986422110 00001112234567788899998877543210 011
Q ss_pred c-CHHHhhccCCC--cEEEEcCCCh
Q 007040 236 I-NAECLQHIKPG--AFLVNTGSSQ 257 (620)
Q Consensus 236 I-~~~~L~~MK~g--AiLINvgRG~ 257 (620)
. ....+..|+.. ..||.+|.+.
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 12234444332 3688888875
No 475
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.05 E-value=0.92 Score=44.83 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=33.5
Q ss_pred eecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.+.++++.|.| .|.||..+++.|...|++|++.+|+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36789999998 79999999999999999999999875
No 476
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=88.04 E-value=0.83 Score=47.95 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=32.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
.|.+|.|.|.|.+|..++..++++|.+|++.++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 57889999999999999999999999999998765
No 477
>PRK12367 short chain dehydrogenase; Provisional
Probab=88.02 E-value=0.92 Score=46.29 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.5
Q ss_pred eeecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
..+.|+++.|.|. |.||+++|+.+...|++|++.+++.
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 3578999999986 7899999999999999999998865
No 478
>PRK13529 malate dehydrogenase; Provisional
Probab=88.02 E-value=6 Score=45.80 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=134.2
Q ss_pred HHhcCCCCeEEEEecccCCc-cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHhCCCCCCCCCC
Q 007040 75 AQRRLRPYQLILCLGSSDRT-VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153 (620)
Q Consensus 75 ~l~~lp~LK~I~~~gaG~D~-VD~~aa~erGI~VtNtpg~~a~aVAE~aLaLiLal~Rrl~~~~~~~~~~g~W~~~~~~~ 153 (620)
+...+|+. +|+.=-.+..+ +.+..-.+..|++.|..--.+ |=-++|-+|+.+|-.
T Consensus 234 v~~~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGT---aaV~LAgll~A~r~~-------------------- 289 (563)
T PRK13529 234 VKRRFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDIQGT---GAVTLAGLLAALKIT-------------------- 289 (563)
T ss_pred HHHhCCCe-EEehhhcCCchHHHHHHHhccCCCeeccccchH---HHHHHHHHHHHHHHh--------------------
Confidence 34555664 66654433332 344444445788888865444 444677777777521
Q ss_pred CCcceeecCcEEEEEeCChhhHHHHHHHhh----CCC-------EEEEECCCCC---CCC------ccccCCce------
Q 007040 154 CRGMRRCRGLVLGIVGRSASARALATRSLS----FKM-------SVLYFDVPEG---KGK------VTFPSAAR------ 207 (620)
Q Consensus 154 ~~~~~~L~GktVGIIGlG~IG~~vA~~Lka----fG~-------~V~~~dr~~~---~~~------~~~~~g~~------ 207 (620)
...|.+.+|.|+|.|..|-.+|+.+.. .|+ +++.+|+..- ... ..+.....
T Consensus 290 ---g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~ 366 (563)
T PRK13529 290 ---GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWD 366 (563)
T ss_pred ---CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccc
Confidence 024788999999999999999999986 588 8999998741 111 00100000
Q ss_pred ---ecCCHHhhhcCC--cEEEEcccCChhhHhhcCHHHhhccCC---CcEEEEcCCChhhcHHHHHHHHH--cCC-ccee
Q 007040 208 ---RMDTLNDLLAAS--DVISLHCAVTDETIQIINAECLQHIKP---GAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGC 276 (620)
Q Consensus 208 ---~~~sL~eLL~~s--DvVil~lPlT~~T~~lI~~~~L~~MK~---gAiLINvgRG~vVDe~AL~~AL~--~G~-I~GA 276 (620)
...+|.|++..+ |+++=+-- .-+.|+++.++.|.+ ..|+.=.|......|+.-.+|.+ +|+ |.+.
T Consensus 367 ~~~~~~~L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~At 442 (563)
T PRK13529 367 TEGDVISLLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVAT 442 (563)
T ss_pred cccCCCCHHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEE
Confidence 124799999988 98885432 237999999999987 89999999877654544444444 343 3322
Q ss_pred EeecCCCCCCC-C---ccccCCCcEEEcCCCCCCc-----HHHHHHHHHHHHHHHHHHH
Q 007040 277 ALDGAEGPQWM-E---AWVREMPNVLILPRSADYS-----EEVWMEIRDKAISVLQTFF 326 (620)
Q Consensus 277 aLDV~E~P~~~-~---spL~~~pNVIlTPHiAg~T-----~ea~~~~~~~a~enL~~~L 326 (620)
+-- | ||.. + ..--+..|+++=|=++-.. ...-++|.-.+++.|..+.
T Consensus 443 Gsp-f--~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v 498 (563)
T PRK13529 443 GSP-F--APVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCV 498 (563)
T ss_pred CCC-C--CCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhC
Confidence 210 1 1110 0 0112467899989755432 2234677777788777764
No 479
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=87.99 E-value=0.85 Score=48.93 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=67.7
Q ss_pred eecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------ccccCCcee----------cCCHHh
Q 007040 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARR----------MDTLND 214 (620)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~--------------~~~~~g~~~----------~~sL~e 214 (620)
...+.++.++|+|-+|-..+...+..|+-|..+|-.+...+ +.-..|... ..-+.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999997653211 000111111 112346
Q ss_pred hhcCCcEEEEc--ccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 215 LLAASDVISLH--CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 215 LL~~sDvVil~--lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
..++.||||.. +|.-|. --++.++.++.||||+++|+.+
T Consensus 241 ~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 67889999975 454443 2478899999999999999974
No 480
>PLN02740 Alcohol dehydrogenase-like
Probab=87.97 E-value=0.91 Score=49.02 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~ 196 (620)
.|.+|.|+|.|.||..++..++.+|. +|++.++...
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 58899999999999999999999999 6999987653
No 481
>PRK12828 short chain dehydrogenase; Provisional
Probab=87.93 E-value=1.6 Score=42.65 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.|. |.||+.+|+.|...|++|++++++..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 367999999975 99999999999999999999998763
No 482
>PRK08374 homoserine dehydrogenase; Provisional
Probab=87.92 E-value=1.9 Score=46.62 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=58.4
Q ss_pred cEEEEEeCChhhHHHHHHHhh--------CC--CEEEEE-CCCCCC----C-C--cc---c-cCC----c-----eecCC
Q 007040 163 LVLGIVGRSASARALATRSLS--------FK--MSVLYF-DVPEGK----G-K--VT---F-PSA----A-----RRMDT 211 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--------fG--~~V~~~-dr~~~~----~-~--~~---~-~~g----~-----~~~~s 211 (620)
.+|+|+|+|++|+.+++.|.. +| .+|.++ |++... . . .. . ..+ . ....+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 479999999999999999876 56 566544 433210 0 0 00 0 000 0 00125
Q ss_pred HHhhh--cCCcEEEEcccCChhhHhhcCHHHhhccCCCcEEEEcCCChhh-cHHHHHHHHHcCC
Q 007040 212 LNDLL--AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGT 272 (620)
Q Consensus 212 L~eLL--~~sDvVil~lPlT~~T~~lI~~~~L~~MK~gAiLINvgRG~vV-De~AL~~AL~~G~ 272 (620)
+++++ ..+|+|+-+.+.. ....+ ....++.|.-+|-..-|.+- ..++|.+..+.+.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~ 141 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERN 141 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcC
Confidence 67777 4789999777532 22222 23445566666655555443 4445665555443
No 483
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=87.84 E-value=1.2 Score=47.64 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=51.0
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC------c-cccC-CceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK------V-TFPS-AARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~~~~------~-~~~~-g~~~~~sL~eLL~~sDvVil~l 226 (620)
+.|++|++||- +++..+++..+..||++|.+..|...... . .... .+....++++.++.+|+|..-.
T Consensus 151 l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 151 LNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 68999999998 78999999999999999999998652211 0 0011 2334578999999999999743
No 484
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.76 E-value=0.53 Score=57.84 Aligned_cols=151 Identities=8% Similarity=-0.008 Sum_probs=90.9
Q ss_pred ecCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC---------CCCc-----c-------------------cc---
Q 007040 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG---------KGKV-----T-------------------FP--- 203 (620)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~---------~~~~-----~-------------------~~--- 203 (620)
+.-.++.|+|.|+.|+..++.+..+|++ . .++..- .... . +.
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 4457899999999999999999988766 1 222110 0000 0 00
Q ss_pred --CCc-eecCC-HHhhhcCCcEEEEcccCChhhHhhcCHH-HhhccCCCc----EEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 204 --SAA-RRMDT-LNDLLAASDVISLHCAVTDETIQIINAE-CLQHIKPGA----FLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 204 --~g~-~~~~s-L~eLL~~sDvVil~lPlT~~T~~lI~~~-~L~~MK~gA----iLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
..- .+... +++.+..+|+||.++-..+.+-.+|..+ ..+.||+|. +|++++=- . .|-|.
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D----~--------gG~ie 346 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCD----I--------GGSIE 346 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccC----C--------CCCee
Confidence 000 00011 4578899999999997777777889888 777899998 88887521 0 11111
Q ss_pred eeEeecCCCCCCCCccccC-------------CCcEE--EcCCCCCC-cHHHHHHHHHHHHHHHHHHHHcC
Q 007040 275 GCALDGAEGPQWMEAWVRE-------------MPNVL--ILPRSADY-SEEVWMEIRDKAISVLQTFFFDG 329 (620)
Q Consensus 275 GAaLDV~E~P~~~~spL~~-------------~pNVI--lTPHiAg~-T~ea~~~~~~~a~enL~~~L~~G 329 (620)
....+-..+.|.+. -+.|+ .=+|+.+. ..++-+.+.+..+.-+...+..|
T Consensus 347 -----~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~lPr~AS~~f~n~llpyv~~la~~g 412 (1042)
T PLN02819 347 -----FLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEASQHFGNILSPFVGSLASMK 412 (1042)
T ss_pred -----ecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11112223333333 33443 55777665 45677777777777777765444
No 485
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.76 E-value=0.9 Score=48.43 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~-V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.+|..++..++++|.+ |++.+++...
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~ 213 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRK 213 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 478999999999999999999999995 9998876543
No 486
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=87.70 E-value=1.6 Score=47.16 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=49.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEE-CCCCCCCCcc---cc------C-C-ce--ecCCH-HhhhcCCcEEEEc
Q 007040 163 LVLGIVG-RSASARALATRSLSFK-MSVLYF-DVPEGKGKVT---FP------S-A-AR--RMDTL-NDLLAASDVISLH 225 (620)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-~~V~~~-dr~~~~~~~~---~~------~-g-~~--~~~sL-~eLL~~sDvVil~ 225 (620)
.+|+|+| .|.+|+.+++.|.... ++|.++ +......... .+ . + .. ...++ .+.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 3699999 5999999999998765 687776 4432221110 10 0 0 01 11111 2345889999999
Q ss_pred ccCChhhHhhcCHHHhhccCCCcEEEEcC
Q 007040 226 CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~gAiLINvg 254 (620)
+|..- +..+. . .+ +..|..+|+.+
T Consensus 81 ~p~~~-s~~~~-~-~~--~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEV-AEEVE-P-KL--AEAGKPVFSNA 104 (341)
T ss_pred CCHHH-HHHHH-H-HH--HHCCCEEEECC
Confidence 99652 22222 2 12 23576666654
No 487
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.66 E-value=0.68 Score=46.42 Aligned_cols=38 Identities=26% Similarity=0.102 Sum_probs=33.4
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
++.++++.|.|. |.||.++|+.|...|++|+..+++..
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~ 41 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA 41 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999985 78999999999999999999998753
No 488
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.65 E-value=0.89 Score=48.79 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~ 197 (620)
.|.+|.|+|.|.||..++..++..|+ +|++.+++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 47899999999999999999999999 69999876543
No 489
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=87.54 E-value=1.5 Score=46.36 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=32.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~ 196 (620)
.|.+|.|.|.|.+|..+++.+++.|+ +|++.+++..
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~ 208 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEA 208 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 57899999999999999999999999 8988887653
No 490
>PRK06196 oxidoreductase; Provisional
Probab=87.52 E-value=0.9 Score=47.60 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=33.7
Q ss_pred eecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999987 88999999999999999999998753
No 491
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.49 E-value=0.72 Score=45.67 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=32.4
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.++++.|.|. |.||+.+|+.|...|++|++++++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999985 9999999999999999999998765
No 492
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=87.45 E-value=1.2 Score=47.79 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=52.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCcee---c---CCHHhhhcCCcEEEEcccCChhhH
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARR---M---DTLNDLLAASDVISLHCAVTDETI 233 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~-~~~g~~~---~---~sL~eLL~~sDvVil~lPlT~~T~ 233 (620)
.|.++.|+|.|.+|..++..++..|.+|++.+......... ...|... . ..+.++....|+|+-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 57889999999999999999999999998887654221100 0011110 0 0122222345666666553211
Q ss_pred hhcCHHHhhccCCCcEEEEcCC
Q 007040 234 QIINAECLQHIKPGAFLVNTGS 255 (620)
Q Consensus 234 ~lI~~~~L~~MK~gAiLINvgR 255 (620)
+ ...+..++++..+|.+|.
T Consensus 258 --~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 --L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --H-HHHHHHhccCCEEEEECC
Confidence 1 224556666776766653
No 493
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=87.40 E-value=0.94 Score=46.95 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=32.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 007040 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
.|.+|.|+|.|.+|..+++.++..|.+|++...+..
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~ 190 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSE 190 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 578899999999999999999999999998887653
No 494
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=87.37 E-value=0.71 Score=50.15 Aligned_cols=107 Identities=7% Similarity=-0.030 Sum_probs=67.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCcc-ccCCceecCCHHhhhcCCcEEEEcccCC-h-hhHhhc
Q 007040 163 LVLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVT-D-ETIQII 236 (620)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--G~~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~sDvVil~lPlT-~-~T~~lI 236 (620)
.+|||||. .+|+..++.++.. ++++. ++|+........ ...++..+.++++++.+.|++++++|.+ + .++.-+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 57999999 6899999888765 47766 467776433311 1224456789999999999999999853 2 222222
Q ss_pred CHHHhhccCCCc-EEEEcCCChhhcHHHHHHHHHcCCcc
Q 007040 237 NAECLQHIKPGA-FLVNTGSSQLLDDCAVKQLLIDGTLA 274 (620)
Q Consensus 237 ~~~~L~~MK~gA-iLINvgRG~vVDe~AL~~AL~~G~I~ 274 (620)
. .+.|+.|. +|+--==. +-+.++|+++.++..+.
T Consensus 83 a---~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 83 A---RALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR 117 (343)
T ss_pred H---HHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence 2 33344443 33322111 45666688888776665
No 495
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=87.34 E-value=1.8 Score=46.14 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=57.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cc----------------------ccCC--ce----ec-C
Q 007040 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VT----------------------FPSA--AR----RM-D 210 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~-~V~~~dr~~~~~~---~~----------------------~~~g--~~----~~-~ 210 (620)
+|.|||.|.+|.++++.|...|+ ++..+|...-... .. .... +. .. +
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 48899999999999999998888 7888886531111 00 0000 00 01 1
Q ss_pred CHHhhhcCCcEEEEcccCChhhHhhcCHHHhhcc-----CCCcEEEEcCCC
Q 007040 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHI-----KPGAFLVNTGSS 256 (620)
Q Consensus 211 sL~eLL~~sDvVil~lPlT~~T~~lI~~~~L~~M-----K~gAiLINvgRG 256 (620)
.-.+++.+.|+|+.++- +.+++..++....... +.+.-||..|..
T Consensus 81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~ 130 (291)
T cd01488 81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTE 130 (291)
T ss_pred hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEc
Confidence 12467788888888765 4467777777655543 234557776653
No 496
>PRK08862 short chain dehydrogenase; Provisional
Probab=87.31 E-value=0.79 Score=46.04 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=33.1
Q ss_pred ecCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 007040 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (620)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafG~~V~~~dr~~~ 196 (620)
+.|+++.|.|.+. ||+++|+.|...|++|+.++++..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 6789999998766 999999999999999999998753
No 497
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=87.28 E-value=1.2 Score=49.58 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=44.4
Q ss_pred ecCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----cc-CC--ceecCCHHhhhcCCcEEEEcc
Q 007040 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FP-SA--ARRMDTLNDLLAASDVISLHC 226 (620)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafG~~V~~~dr~~~~~~~~----~~-~g--~~~~~sL~eLL~~sDvVil~l 226 (620)
-..++|.|.| .|-||+.+++.|.+.|++|+++|+........ .. .. ....+-++..+..+|+|+-+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlA 192 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLA 192 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECc
Confidence 3667899998 69999999999999999999999753211100 00 01 112233445566789887665
No 498
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=87.25 E-value=1.9 Score=46.75 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=49.9
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccCCc-eecCCHH-hhhcCCcEEEEcccCChhhHhhc
Q 007040 163 LVLGIVGR-SASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQII 236 (620)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG~---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~sDvVil~lPlT~~T~~lI 236 (620)
.+|+|||. |.+|+++.+.|...++ ++.++......+......+. ....+++ +.++.+|+|++++|.. ....++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~-~s~~~v 83 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAA-VSRSFA 83 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHH-HHHHHH
Confidence 57999996 9999999999994433 44444333222221111111 1112222 2258899999999942 233322
Q ss_pred CHHHhhccCCCcEEEEcC
Q 007040 237 NAECLQHIKPGAFLVNTG 254 (620)
Q Consensus 237 ~~~~L~~MK~gAiLINvg 254 (620)
. .. .+.|..+|+.+
T Consensus 84 ~-~~---~~~G~~VIDlS 97 (336)
T PRK05671 84 E-KA---RAAGCSVIDLS 97 (336)
T ss_pred H-HH---HHCCCeEEECc
Confidence 2 11 24588899987
No 499
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.25 E-value=1 Score=49.98 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=64.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----cccCCceec--CCH-----HhhhcCCcEEEEcccCChh
Q 007040 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----TFPSAARRM--DTL-----NDLLAASDVISLHCAVTDE 231 (620)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG~~V~~~dr~~~~~~~-----~~~~g~~~~--~sL-----~eLL~~sDvVil~lPlT~~ 231 (620)
+|.|||+|..|.+.|+.|...|+.|.++|........ ....++... ... .+.+...|+|+..-...+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 5899999999999999999999999999976543211 111232221 112 2467789998884433322
Q ss_pred hH----------hhcCHH-Hh-hccCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 007040 232 TI----------QIINAE-CL-QHIKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (620)
Q Consensus 232 T~----------~lI~~~-~L-~~MK~-gAiLINvgRG~vVDe~AL~~AL~~ 270 (620)
.- .++..- .+ ..+++ ..+-|--+-|+.--..-|...|..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 123322 22 33333 344455556888777777777764
No 500
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=87.19 E-value=0.96 Score=44.98 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=32.9
Q ss_pred ecCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 007040 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (620)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafG~~V~~~dr~~ 195 (620)
+.|+++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 68999999997 7999999999999999999999754
Done!