RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007040
(620 letters)
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 135 bits (343), Expect = 8e-36
Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 17/226 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
A+ +A+ +ALLL +R + + V + +G + ++G
Sbjct: 83 ADAVAEFALALLLAPYKRIIQYGE-KMKRGDYGRDV-----EIPLIQGEKVAVLGLGEIG 136
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
+ + V F K R ++L + L + + T
Sbjct: 137 TRVGKILAALGAQVRGFS-RTPK-----EGPWRFTNSLEEALREARAAVCALPLNKHTRG 190
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVR 292
++ + L + A VN G +++LD V ++L + A D +A
Sbjct: 191 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 250
Query: 293 EMPNVLILP--RSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
+PNV+ P +E VW ++ +A+ L T + G P+N
Sbjct: 251 SLPNVVATPWVAGGYGNERVWRQMVMEAVRNLIT-YATGGRPRNIA 295
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 131 bits (332), Expect = 6e-34
Identities = 53/244 (21%), Positives = 95/244 (38%), Gaps = 5/244 (2%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALS--ASGWLGSVQP 152
+D + G+ + + +D + L+L + R R A + +
Sbjct: 94 LDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLE 153
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATR-SLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
+ + RG VLG VG A + +A + M ++Y+DV + A R+D+
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L +L SD +S+ T +I+ +KPG+ +VNT ++ A+ L G
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 272 TLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330
L LD E PQ + + EM +V + + E + E ++ + F G
Sbjct: 274 KLLSAGLDVHEFEPQ-VSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGK 332
Query: 331 IPKN 334
Sbjct: 333 PLLT 336
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 131 bits (331), Expect = 8e-34
Identities = 77/250 (30%), Positives = 134/250 (53%), Gaps = 14/250 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW---LGSVQ 151
+D A DLG+ + +V + EE AD+ + +L L RR L + AL + ++
Sbjct: 99 IDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ-ALREGTRVQSVEQIR 157
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRM 209
+ G R RG LGI+G +A+A R+ +F +VL++D + +G + +R+
Sbjct: 158 EVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERAL---GLQRV 214
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
TL DLL SD ++LHC + + +IN ++ ++ GAFLVNT L+D+ A+ Q L
Sbjct: 215 STLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 274
Query: 270 DGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDK-AISVLQTFF 326
+G + G ALD +E + + +++ PN++ P +A YSE+ +E+R++ A + +
Sbjct: 275 EGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRR--A 332
Query: 327 FDGVIPKNAI 336
G IP +
Sbjct: 333 ITGRIPDSLK 342
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 129 bits (327), Expect = 2e-33
Identities = 71/321 (22%), Positives = 124/321 (38%), Gaps = 48/321 (14%)
Query: 49 LGRLADGKIEAAAA---VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADL-G 104
+ + ++ V A A + L + + G + + L
Sbjct: 36 VEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGG-AG-LSNEWMEKLPS 93
Query: 105 LRLI--------HVDTSRA---------------EEIADTVMALLLGLLRRTHLLARHAL 141
L +I VD +RA +++AD +AL+L +LRR R +
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL-V 152
Query: 142 SASGWLGSVQ-PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGK 197
W Q PL + R +G++G RALA+R+ +F MSV Y++ +
Sbjct: 153 REGRWAAGEQLPLGHSPKGKR---IGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-- 207
Query: 198 GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257
+ DL SDV+++ A + T I++A LQ + P +VN
Sbjct: 208 ------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261
Query: 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316
++D+ A+ + L GT+AG LD P + PN +++P + E M +
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEF-HTTPNTVLMPHQGSATVETRMAMGK 320
Query: 317 KAISVLQTFFFDGVIPKNAIS 337
++ L F G N ++
Sbjct: 321 LVLANLAA-HFAGEKAPNTVN 340
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 128 bits (324), Expect = 5e-33
Identities = 64/294 (21%), Positives = 106/294 (36%), Gaps = 33/294 (11%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSAL--AADLGLRLI--------HVDTSRAEE-- 117
+ + +L + ++ + ++ I H+D +
Sbjct: 33 ITIDEMIETAKSVDALLITLN-EK-CRKEVIDRIPENIKCISTYSIGFDHIDLDACKARG 90
Query: 118 I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
I A+ M LLLG RR + + W G G +
Sbjct: 91 IKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM-IRTRSWPGWEPLELVGEK-LDNKT 148
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
LGI G + +ALA R+ F M + YFD A D+L+ LL+ S SL
Sbjct: 149 LGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSL 208
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
+ T ET N ++ + GA +VNT L+D+ V L G LA D G
Sbjct: 209 NAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 268
Query: 284 PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P E + ++PN + P + + ++ +A ++ F G A++
Sbjct: 269 PNINEGY-YDLPNTFLFPHIGSAATQAREDMAHQANDLIDA-LFGGADMSYALA 320
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 127 bits (321), Expect = 1e-32
Identities = 64/351 (18%), Positives = 126/351 (35%), Gaps = 63/351 (17%)
Query: 4 NRFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAV 63
+ + + R + V+ + + + ++ L + L R +
Sbjct: 8 HHHSSGLVPRGSHMEAIGVLMMCPMSTYLEQE-------LDKRFKLFRYWTQPAQRDFLA 60
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADL-GLRLI--------HVDTSR 114
+ + ++ ++ D+ L L L ++ VD +
Sbjct: 61 -------------LQAESIRAVVGNSNA--GADAELIDALPKLEIVSSFSVGLDKVDLIK 105
Query: 115 A---------------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRR 159
+++AD + L+L +LRR ++ + W L
Sbjct: 106 CEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY-VRRGAWKFGDFKLTTKFSG 164
Query: 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDTLNDLL 216
R +GI+G A+A R+ +F + YF P + ++ +L
Sbjct: 165 KR---VGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN--------TNYTYYGSVVELA 213
Query: 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276
+ SD++ + C +T ET IIN E + + P L+N G +D+ + L++G L G
Sbjct: 214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGA 273
Query: 277 ALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
LD E P+ E + NV++LP + E + D + L+ F
Sbjct: 274 GLDVFEREPEVPEKL-FGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 125 bits (315), Expect = 9e-32
Identities = 57/261 (21%), Positives = 94/261 (36%), Gaps = 32/261 (12%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A +LG + V IA+ + + LLR T + + V
Sbjct: 83 IDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAY-TTSRTAKKNF--KVDAFM 139
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM----D 210
+ R +G+VG R A +V+ DV F
Sbjct: 140 FS-KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDV--------FEIKGIEDYCTQV 190
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L+++L SD+I++H E ++ + L+ +K GA LVN QL+D AV + +
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 271 GTLAGCALD--GAEGPQWMEAW-------------VREMPNVLILPRSADYSEEVWMEIR 315
G L G D E + + V P VLI P Y++E +
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 316 DKAISVLQTFFFDGVIPKNAI 336
+ + L+ + N I
Sbjct: 311 EVSYQNLKD-LAETGDCPNKI 330
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 125 bits (315), Expect = 1e-31
Identities = 60/263 (22%), Positives = 91/263 (34%), Gaps = 35/263 (13%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D G+RL +V IA+ + L LLR + L A +
Sbjct: 82 IDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGK-VQAQLQAGDY--EKAGTF 138
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD---- 210
G + +G++G + F V+ +D +P D
Sbjct: 139 IG-KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP--------YPMKGDHPDFDYV 189
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L DL SDVI LH ++ IIN +KPGA ++NT L+D A+ L
Sbjct: 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS 249
Query: 271 GTLAGCALD--GAEGPQWMEAWV------------REMPNVLILPRSADYSEEVWMEIRD 316
G LAG +D E + MPNV++ P A Y+E +
Sbjct: 250 GKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNM-- 307
Query: 317 KAISVLQTF--FFDGVIPKNAIS 337
LQ F ++
Sbjct: 308 -VYFSLQHLVDFLTKGETSTEVT 329
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 125 bits (315), Expect = 1e-31
Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 35/294 (11%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLG--LRLI--------HVDTSRA---- 115
L + R +++ + + + + + L L+ I H+D + A
Sbjct: 60 LTPSGIASRAHGAEVLFVTAT-EA-ITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLG 117
Query: 116 -----------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
+ A+ M L+L RR + R + + W G G G
Sbjct: 118 IKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM-VRSGSWPGWGPTQLLG-MGLTGRR 175
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
LGI G RA+ATR+ F +++ Y + + A DTL+ LL ASD+ +
Sbjct: 176 LGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEG--AIYHDTLDSLLGASDIFLI 233
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
E ++ + + I GA ++N L++D A+ + L L LD
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293
Query: 284 PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P + R + N+ + P + E + I ++ +P N IS
Sbjct: 294 PAIDPRY-RSLDNIFLTPHIGSATHETRDAMGWLLIQGIEA-LNQSDVPDNLIS 345
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 123 bits (312), Expect = 2e-31
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 41/265 (15%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHL----LARHALSASGWLGSV 150
+D A A +LG ++ +V IA+ +LR+ +ARH L + +G
Sbjct: 84 IDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG-- 141
Query: 151 QPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--- 207
R R V+G+VG + F V+ +D+ F +
Sbjct: 142 -------REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI--------FRNPELEKK 186
Query: 208 --RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265
+D+L+DL +DVISLH + +IN E + +K +VN L+D AV
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 266 QLLIDGTLAGCALD--GAEGPQWMEAWV------------REMPNVLILPRSADYSEEVW 311
+ L G + G A+D E + E W PNVL+ P++A Y+
Sbjct: 247 RGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAV 306
Query: 312 MEIRDKAISVLQTFFFDGVIPKNAI 336
+ KA +G + +
Sbjct: 307 RNMVVKAFDNNLE-LVEGKEAETPV 330
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 123 bits (311), Expect = 3e-31
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 34/263 (12%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D G+ + H+ E +A+ A++L L++R + + S
Sbjct: 78 IDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKR-IEDRVKKLNF--SQDSEI 134
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RM 209
R L LG++G +A L+F M VL +DV
Sbjct: 135 LA-RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDV--------VKREDLKEKGCVY 185
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
+L++LL SDVISLH T ET +IN E + +K G +L+NT +++D A+ +
Sbjct: 186 TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQ 245
Query: 270 DGTLAGCALD--------------GAEGPQWMEAWVR--EMPNVLILPRSADYSEEVWME 313
G +G LD + + NV+I P A Y+++
Sbjct: 246 RGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLER 305
Query: 314 IRDKAISVLQTFFFDGVIPKNAI 336
IR++ + V++ F G + +
Sbjct: 306 IREETVKVVKA-FVKGDLEQIKG 327
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 122 bits (308), Expect = 7e-31
Identities = 72/298 (24%), Positives = 112/298 (37%), Gaps = 38/298 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI--------HVDTSRA------ 115
L R RR R Q ++ DR L A LR+I + D
Sbjct: 34 LTREEILRRCRDAQAMMAF-MPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVW 92
Query: 116 ---------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166
A+ + L +GL R + + + G QP G +G
Sbjct: 93 LTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF-VRSGKFRG-WQPRFYG-TGLDNATVG 149
Query: 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226
+G A A+A R + ++ Y + + R++ ++L A+SD I L
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVA-CSELFASSDFILLAL 208
Query: 227 AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD------- 279
+ +T+ ++NAE L ++PGA LVN ++D+ AV L G L G A D
Sbjct: 209 PLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDW 268
Query: 280 -GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
A+ PQ ++ + PN L P V +EI A + G P NA+
Sbjct: 269 ARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQ-ALAGERPINAV 325
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 121 bits (305), Expect = 1e-30
Identities = 85/304 (27%), Positives = 126/304 (41%), Gaps = 37/304 (12%)
Query: 58 EAAAAVLLHSLAYLPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI-------- 108
E V +H +LP+A +R+ ++ DR + GL++I
Sbjct: 19 ERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVE-DRIDAEVMDRAKGLKVIACYSVGVD 77
Query: 109 HVDTSRAEE--I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153
HVD A E I AD +ALLL + RR A + W L
Sbjct: 78 HVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY-ARDGLWKAWHPEL 136
Query: 154 CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN 213
G +GL LG+VG +A+A R+L+F M V+Y F S L
Sbjct: 137 LLG-LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLS-------LE 188
Query: 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273
+LL +DV+SLH +T ET +++N E L +K GA L+NT L+D A+ + L G L
Sbjct: 189 ELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHL 247
Query: 274 AGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332
G LD + P + +PN +I P + + A+ L +G P
Sbjct: 248 FGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLA-VLEGREP 306
Query: 333 KNAI 336
N +
Sbjct: 307 PNPV 310
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 119 bits (302), Expect = 5e-30
Identities = 56/258 (21%), Positives = 96/258 (37%), Gaps = 32/258 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSAL--AADLGLRLI--------HVDTSRAEE-- 117
+P +R + +LCL S D VD + AA L++I H+ ++
Sbjct: 42 IPAKELERGVAGAHGLLCLLS-DH-VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRG 99
Query: 118 I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
I A+ ++LLL RR + GW G
Sbjct: 100 IRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEE-VKNGGWTSWKPLWLCG-YGLTQST 157
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
+GI+G +A+A R F + + + + + A + +L A SD I +
Sbjct: 158 VGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVS-TPELAAQSDFIVV 216
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
C++T T + N + Q +K A +N +++ + Q L G +A LD
Sbjct: 217 ACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276
Query: 284 PQWMEAWVREMPNVLILP 301
P + + N +ILP
Sbjct: 277 PLPTNHPLLTLKNCVILP 294
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 118 bits (298), Expect = 4e-29
Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 23/252 (9%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
VD A D + + V + +A+ V+ ++L L+R + GW ++
Sbjct: 127 VDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP-SHEWARKGGW--NIADCV 183
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214
+ +G V A+ R F + + Y D V T D
Sbjct: 184 SHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATRED 243
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
+ DV++L+C + ET +IN E L+ K GA++VNT +L D AV + L G LA
Sbjct: 244 MYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 303
Query: 275 GCALD--GAEGPQWMEAWVREMPNVLILP------RSA--DYSEEVWMEIRDKAISVLQT 324
G A D + W R MP + P +A Y+ +
Sbjct: 304 GYAGDVWFPQPAPKDHPW-RTMPYNGMTPHISGTTLTAQARYAAGTREILEC-------- 354
Query: 325 FFFDGVIPKNAI 336
FF+G ++
Sbjct: 355 -FFEGRPIRDEY 365
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 116 bits (292), Expect = 1e-28
Identities = 67/296 (22%), Positives = 115/296 (38%), Gaps = 38/296 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI--------HVDTSRAEE--I- 118
+PR ++++ ++ + S+R LR++ ++D A + I
Sbjct: 34 IPREILLKKVKEVDALVTM-LSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIY 92
Query: 119 ------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM---RRCRGL 163
AD ALLL R R + + W G
Sbjct: 93 VTNTPDVLTDATADLAFALLLATARHVVKGDR-FVRSGEWKKRGVAWHPKWFLGYDVYGK 151
Query: 164 VLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDTLNDLLAASD 220
+GI+G +A+A R+ F M +LY+ E + ++ A L DLL SD
Sbjct: 152 TIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVEREL----NAEFKP-LEDLLRESD 206
Query: 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280
+ L +T ET +IN E L+ +K A L+N +++D A+ + L +G +AG LD
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266
Query: 281 AEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
E + + ++ NV++ P S + + L F G IP +
Sbjct: 267 FEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA-FKRGEIPPTLV 321
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 113 bits (284), Expect = 1e-27
Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 23/252 (9%)
Query: 95 VDSALAADLGLRLIHVDTSR---AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ 151
VD L + V + A+ I+++V+A +L ++R H + A W
Sbjct: 72 VDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALP-- 129
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
G L I G ++LA ++ + M V+ + G
Sbjct: 130 ---MTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVN-TTGH-PADHFHETVAFTA 184
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
D LA ++ I +T T + + E Q K L+N G +D A+ L
Sbjct: 185 TADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHH 244
Query: 272 TLAGCALD-------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQT 324
L+ ALD + P W + +VLI P + + +
Sbjct: 245 QLSMAALDVTEPEPLPTDHPLW------QRDDVLITPHISGQIAHFRATVFPIFAANFAQ 298
Query: 325 FFFDGVIPKNAI 336
F DG + +N +
Sbjct: 299 FVKDGTLVRNQV 310
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 106 bits (266), Expect = 1e-25
Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 34/193 (17%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ ALLL + + A + S G LGI+G R +A
Sbjct: 86 AEHAFALLLAHAKNILE-NNELMKAGIFRQS-----PTTL-LYGKALGILGYGGIGRRVA 138
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR---RMDTLNDLLAASDVISLHCAVTDETIQI 235
+ +F M V+ + ++ DL SD + + +TD+T +
Sbjct: 139 HLAKAFGMRVIAYTR--------SSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGM 190
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVRE-- 293
+N+ L + + +VN + ++ + L + + D W E
Sbjct: 191 VNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSD---------VWWNEPE 241
Query: 294 -----MPNVLILP 301
+ N ++ P
Sbjct: 242 ITETNLRNAILSP 254
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 106 bits (267), Expect = 3e-25
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 12/215 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D D G+ ++ S A+ AL++ RR +L W S
Sbjct: 89 IDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQ-YVASLKHGAWQQSGLKST 146
Query: 155 RGMRRC------RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR 208
+G LGI G + +A +F M+VL + E +
Sbjct: 147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWG-RENSKERARADGFAV 205
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
++ + L SDV+S+H + DET II L +KP A VNT ++L+++ + L
Sbjct: 206 AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTAL 265
Query: 269 IDGTLAGCALD--GAEGPQWMEAWVREMPNVLILP 301
G A+D E M N + P
Sbjct: 266 NRGRPGMAAIDVFETEPILQGHTL-LRMENCICTP 299
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 104 bits (262), Expect = 9e-25
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGS--VQP 152
+D A G+ + V +E +A+ + L++ L+R+ H A + W +
Sbjct: 78 IDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHY-ADKFIRRGEWESHAKIWT 136
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD-- 210
+ + G +GI+G A +A+A R + F + + Y+ K + + +
Sbjct: 137 GFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWS-RHRK-----VNVEKELKAR 190
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+++LL SD++ L +T +T IIN E ++ ++ G +LVN G L+D+ AV + +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAI 249
Query: 269 IDGTLAGCALD-GAEGPQWMEAWVREMPNVLILP 301
G L G A D + P + ++ P
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTP 283
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 104 bits (261), Expect = 2e-24
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 10/211 (4%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D AA GL + V S +A+ + +L L+R + + W +V +
Sbjct: 100 IDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVP-GYNQVVKGEW--NVAGIA 156
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDT 211
G +G VG + L R F ++LY D + K T A+ ++
Sbjct: 157 YRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET---GAKFVED 213
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
LN++L DVI ++ +T++T + N E + +K G +VN +++ AV + G
Sbjct: 214 LNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESG 273
Query: 272 TLAGCALD-GAEGPQWMEAWVREMPNVLILP 301
+ G + D P + R MPN + P
Sbjct: 274 HIGGYSGDVWDPQPAPKDHPWRYMPNQAMTP 304
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 103 bits (258), Expect = 9e-24
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 24/190 (12%)
Query: 122 VMALLLGLLRRTHLLARHALSASG-W----LGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
V+ LL LLR + +A + G GS + RG LGI+G
Sbjct: 110 VIGELLLLLR--GVPEANAKAHRGVGNKLAAGSFE--------ARGKKLGIIGYGHIGTQ 159
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
L + S M V ++D+ A ++ L+DLL SDV+SLH T ++
Sbjct: 160 LGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM 215
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWV--- 291
A+ + +KPG+ L+N ++D A+ L LAG A+D E + +
Sbjct: 216 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 275
Query: 292 REMPNVLILP 301
E NVL+ P
Sbjct: 276 AEFDNVLLTP 285
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 101 bits (254), Expect = 3e-23
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 122 VMALLLGLLRRTHLLARHALSASG-W----LGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
V+ ++ L+R + R + +G W +GS + RG LGIVG
Sbjct: 121 VIGEIIMLMR--RIFPRSVSAHAGGWEKTAIGSRE--------VRGKTLGIVGYGNIGSQ 170
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
+ + S M+V Y+D + + +L++LL SDV+SLH + T ++I
Sbjct: 171 VGNLAESLGMTVRYYDTSDKLQYGN----VKPAASLDELLKTSDVVSLHVPSSKSTSKLI 226
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWV--- 291
L+ +K GAFL+N +D A+ ++L +G LAG A+D E E +
Sbjct: 227 TEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPL 286
Query: 292 REMPNVLILP 301
+ + NV++ P
Sbjct: 287 QGLENVILTP 296
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 98.5 bits (246), Expect = 2e-22
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ V+ +L L+R A + W V + + G + +G +
Sbjct: 124 AEHVVMTMLVLVRNFVP-AHEQIINHDW--EVAAIAKDAYDIEGKTIATIGAGRIGYRVL 180
Query: 179 TRSLSFKMSVLYFD----VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
R + F L + +P+ + ARR++ + +L+A +D+++++ + T
Sbjct: 181 ERLVPFNPKELLYYDYQALPKDAEEKV---GARRVENIEELVAQADIVTVNAPLHAGTKG 237
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
+IN E L K GA+LVNT + V L G L G D
Sbjct: 238 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGD 282
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 95.3 bits (238), Expect = 8e-22
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ + L+ + R+ A + W G+ G +GI+G +A
Sbjct: 104 AELAVGLMFSVARKIAF-ADRKMREGVWAKK---EAMGIE-LEGKTIGIIGFGRIGYQVA 158
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDLLAASDVISLHCAVTDET 232
+ + M++L +D +P+ R + L LL SDV+++H + + T
Sbjct: 159 KIANALGMNILLYDP--------YPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVEST 210
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-GAEGPQWMEAWV 291
+IN E L+ +K A L+NT ++D A+ + L +G +AG LD E P + +
Sbjct: 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPL 270
Query: 292 REMPNVLILP 301
+ NV++ P
Sbjct: 271 TKFDNVVLTP 280
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 94.6 bits (236), Expect = 2e-21
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW---LGSVQ 151
+D+ A +++++ + + + + L++ R+ + + + + G
Sbjct: 82 IDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT-SMALAKSGIFKKIEGL-- 138
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD- 210
G +GIVG + + + M VL +D+ + A +++
Sbjct: 139 -------ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDI------LDIREKAEKINA 185
Query: 211 ---TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
+L +LL SDVISLH V+ + II+ + +K +VNT + ++ A+
Sbjct: 186 KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDY 245
Query: 268 LIDGTLAGCALD 279
+ G + A D
Sbjct: 246 IKKGKVYAYATD 257
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 93.0 bits (232), Expect = 9e-21
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 19/167 (11%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ +++ L R+ A ++ W G G LGI+G R +A
Sbjct: 127 AELTCGMIMCLARQIPQ-ATASMKDGKWERK---KFMGTE-LNGKTLGILGLGRIGREVA 181
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDLLAASDVISLHCAVTDET 232
TR SF M + +D S + L ++ D I++H + T
Sbjct: 182 TRMQSFGMKTIGYDP--------IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 233
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
++N K G +VN ++D+ A+ + L G AG ALD
Sbjct: 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 280
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 94.3 bits (235), Expect = 2e-20
Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 46/295 (15%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
VD A G+ +++ TS A+ +ALLL R+ A +L W S
Sbjct: 80 VDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPA-ADASLREHTWKRS---SF 135
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMD-- 210
G G +G+VG + +A R +F V+ +D V + A ++
Sbjct: 136 SGTE-IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR--------AAQLGIE 186
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+L+DLLA +D IS+H T ET +I+ E L KPG +VN L+D+ A+ +
Sbjct: 187 LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI 246
Query: 269 IDGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSADYSEE----VWMEIRDKAISVL 322
G + LD E ++ + E+ V++ P + E ++ + L
Sbjct: 247 TGGHVRAAGLDVFATEPCT--DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 304
Query: 323 QTFFFDGVIPKNAISDTEGCEN----EIDDEIEQYNKLDKVSTLEGSVGGQLTDD 373
G +A+ N +++E+ + L V L G + G L+D+
Sbjct: 305 -----AGEFVPDAV-------NVGGGVVNEEVAPWLDL--VRKL-GVLAGVLSDE 344
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 86.6 bits (215), Expect = 2e-18
Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 55/212 (25%)
Query: 95 VDSALAADLGLRLI--------HVDTSRAEE---------------IADTVMALLLGLLR 131
V+ +L + + + HVD + ++ + + V + LL L
Sbjct: 52 VNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111
Query: 132 RTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYF 191
R G+ R +GIVG L TR + + L
Sbjct: 112 RD-----------GFS------------LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC 148
Query: 192 DVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPG 247
D P TL++L+ +DV++ H + + T+ + + ++ +KPG
Sbjct: 149 DPPRAA-----RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPG 203
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
A L+N ++D+ A+ L G LD
Sbjct: 204 AILINACRGPVVDNAALLARLNAGQPLSVVLD 235
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 84.3 bits (209), Expect = 6e-18
Identities = 63/288 (21%), Positives = 96/288 (33%), Gaps = 50/288 (17%)
Query: 33 LEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92
L+ L + ++ EA + + A A +L +
Sbjct: 22 LKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLS---WFQSTYAG- 77
Query: 93 RTVDSALAADL--GLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV 150
VD L A +L +V +++ V LL L+R+ L W
Sbjct: 78 --VDVLLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQ-KQRLW---- 130
Query: 151 QPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL----------YFDVPEGKGKV 200
Q + +G L I+G + + +A F M VL FD
Sbjct: 131 QS--HPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQ---- 184
Query: 201 TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260
+ LN +LA +DVI T ET + A +H KPGA L N G ++
Sbjct: 185 --------LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 261 DCAVKQLLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
+ + L G L LD A+ P W PN++I P
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLW------GQPNLIITP 278
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 84.3 bits (209), Expect = 1e-17
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD----TLNDLL 216
G+VG L VL D P AR D +L LL
Sbjct: 115 AERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---------QAREPDGEFVSLERLL 165
Query: 217 AASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
A +DVISLH + + T +++ L ++PG +LVN ++D+ A+++LL G
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225
Query: 273 LAGCALD 279
ALD
Sbjct: 226 DLEVALD 232
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 82.7 bits (205), Expect = 2e-17
Identities = 52/281 (18%), Positives = 85/281 (30%), Gaps = 56/281 (19%)
Query: 46 HVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLG-------SSDRTVDSA 98
H + G A L + P R + + LG S
Sbjct: 28 HARVREWKVGDNNPADYAL----VWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEM 83
Query: 99 LAADLGL-RLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM 157
L A + L RL DT ++ + ++ +L RR A W +P
Sbjct: 84 LDASIPLFRL--EDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQAL-W----KP--LPE 134
Query: 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVL----------YFDVPEGKGKVTFPSAAR 207
+GI+G +A ++ + + G
Sbjct: 135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG----------- 183
Query: 208 RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
+ L L + V+ T +T+ IIN+E L + GA+++N + + +
Sbjct: 184 -REELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAA 242
Query: 268 LIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
L G L G LD E P W P V + P
Sbjct: 243 LDSGKLKGAMLDVFSQEPLPQESPLW------RHPRVAMTP 277
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 3e-11
Identities = 85/532 (15%), Positives = 148/532 (27%), Gaps = 161/532 (30%)
Query: 2 MKNRFPAAMPHR-------DNPTPLPSVVA--LNCIEDCVLEQDSLAGVALVEHVPLGR- 51
++ +F +P D PT +V L + V ++ L
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-LTEF 91
Query: 52 ----LADGKIEAAAAVLLHSLAYLPRAAQRRLRPY-QLILCLGSS-DRTVDSAL--AADL 103
L I A AA LL + ++ Y + D+ +SAL A
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 104 G--------------------LRLIHVDTSRA--EEIADTVMALLLGLLRRTHLLAR--- 138
G LR ++ T ++ L L+R T +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 139 HALSASGWL----------------------GSVQPLCRGMRRCR--GL--------VLG 166
L+ WL G +Q L + + G + G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKG 269
Query: 167 IVGRSA---SARALAT-------RSLSFKMSVLYFDVPEG-KGKVTFPSAARRMDTLNDL 215
G S +A A+A K + F + G + +P+ + L D
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDS 327
Query: 216 LAASD--------VISLHCAVTDETIQIINAECL---QHIK------PGAFLVNTGSSQL 258
L ++ + +L + + N+ L + ++ +V +G Q
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLVV-SGPPQS 385
Query: 259 LDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLI--LPRSA----DYSEEV 310
L + L A LD + P + R+ LP ++
Sbjct: 386 L--YGLNLTL-RKAKAPSGLDQSRIPFSE------RK-LKFSNRFLPVASPFHSHLLVPA 435
Query: 311 WMEIRDKAISVLQTFFFDGV---IPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVG 367
I + F+ IP + DT + + L GS+
Sbjct: 436 SDLINKDLVK--NNVSFNAKDIQIP---VYDTFDGSD--------------LRVLSGSIS 476
Query: 368 GQLTDDIQVSP---EDSLKKGISWSRD-SPSQLQGSG--FSQNSANTKSDGR 413
++ D I P E + + + D P G G +N DG
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN-----KDGT 523
Score = 37.7 bits (87), Expect = 0.012
Identities = 37/232 (15%), Positives = 69/232 (29%), Gaps = 79/232 (34%)
Query: 77 RRLRP-YQLILCLGSSDRTVDSALAADLGLRLIHVDTSR------AEEIADTVM---ALL 126
+R+R Y ++ + VD L + + I+ ++ ++ T AL
Sbjct: 1682 KRIRENYSAMIF----ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 127 L------------GLLRRTHLLARHAL---SASGWLGSVQPLCRGMRRCRGLVLGIVGRS 171
L GL+ A H+L +A L V+ I
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAA---------LA-----SLADVMSI---E 1780
Query: 172 ASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAA---RRMDTLNDLLAASDVISLHCA 227
+ + R ++ + VP + G+ + A R+ A V+
Sbjct: 1781 SLVEVVFYRGMT-----MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
T ++I+N + +Q + G L ALD
Sbjct: 1836 RTGWLVEIVN----------------------YNVENQQYVAAGDLR--ALD 1863
Score = 34.6 bits (79), Expect = 0.11
Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 59/212 (27%)
Query: 425 HARQ------KSLQKPDDPSALEKESTS-------------HKEDDTAMSGTDQASSRCA 465
A Q K L +P + A + E T+ + + + DQ +
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN--L 86
Query: 466 SPEELRS---RKTPIESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRP----- 517
E + I ++ +K L + L + E +K+ Y+ A RP
Sbjct: 87 CLTEFENCYLEGNDIHAL---AAKLLQENDTTLVKTK-ELIKN-YITARIMAKRPFDKKS 141
Query: 518 --AL--HISRQRHK-----GG-GWI---LETMSNVTKR-DPAAQFLICKSKDTIGLRSFT 563
AL + + GG G E + ++ + LI S +T+
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL------ 195
Query: 564 AGGKLLQINRRMEFVFASHSFDAWESWAIEGP 595
+L++ E VF + + W +E P
Sbjct: 196 --SELIRTTLDAEKVF-TQGLNI-LEW-LENP 222
Score = 33.5 bits (76), Expect = 0.30
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 43/130 (33%)
Query: 499 SGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKDTIG 558
G+ +++ Y ++ + + K I E ++ T R K +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKE---INEHSTSYTFRSE---------KGLLS 1727
Query: 559 LRSFTAGGKLLQ---------INRRME--------FVFASHS---FDAWESWAIEG--PL 596
FT Q ++ FA HS + A S A +
Sbjct: 1728 ATQFT------QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA--DVMSI 1779
Query: 597 EE-CRLVNCR 605
E +V R
Sbjct: 1780 ESLVEVVFYR 1789
Score = 32.7 bits (74), Expect = 0.52
Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 35/156 (22%)
Query: 148 GSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV-------PEGKGKV 200
GS Q +GM G+ L S +A+ + R+ + F + P +
Sbjct: 1625 GS-Q--EQGM----GMDL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-TI 1674
Query: 201 TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI--KPGAFLVNTGSSQ- 257
F + N + I T++ + IN + L T +Q
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 258 --LLDDCAVKQLL-------IDGTLAG------CAL 278
L + A + L D T AG AL
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 6e-06
Identities = 82/509 (16%), Positives = 151/509 (29%), Gaps = 156/509 (30%)
Query: 210 DTLNDLLAASDVISLHCA-VTDETIQIINAECLQHI--KPGAFLVNTGSSQLLDDCAVKQ 266
D L+ A V + C V D I++ E + HI A +G+ +L KQ
Sbjct: 20 DILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQ 75
Query: 267 LLIDGTLAGCALDGAEGP--QW-MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQ 323
+ ++ ++ M E R +++E RD+ + Q
Sbjct: 76 ----EEMVQKFVEEVLRINYKFLMSPIKTE-------QRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 324 TFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVG-GQ--LTDDIQVSPED 380
F K +S + ++ + + V ++G +G G+ + + V
Sbjct: 125 VF------AKYNVSRLQ-PYLKLRQALLELRPAKNV-LIDGVLGSGKTWVA--LDVCLSY 174
Query: 381 SLKK----GISW----SRDSPS----QLQ------GSGFSQNSANTKSDGRRSRSGKKAK 422
++ I W + +SP LQ ++ S ++ + R S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 423 KRHARQKSLQKP----DD---PSALEK----------------------ESTSHKEDDTA 453
+R + K + + A +T+H D
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 454 MSG--TDQASSRCA-----SPEELRSRKT---P--IESIQESTSKKLSR-------SSKK 494
D+ S P++L P + I ES L+ + K
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 495 LS---EVSGETLKDGYVVALYARD----RPALHISRQRHKGGGWILETM-SNVTKRDPA- 545
L+ E S L+ ++ P+ HI +L + +V K D
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTI-------LLSLIWFDVIKSDVMV 406
Query: 546 -AQFLICKS---KD----TIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLE 597
L S K TI + S L++ ++E +A H
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKLENEYALHR-------------- 447
Query: 598 ECRLVNCRNPLVFFFF----------YFF 616
+V+ N F YF+
Sbjct: 448 --SIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Score = 47.5 bits (112), Expect = 1e-05
Identities = 72/407 (17%), Positives = 131/407 (32%), Gaps = 131/407 (32%)
Query: 73 RAAQRRL---RPYQ---LILCLGSSD-----RTVDSALAADLGLR-LIHVDTSRAEEIAD 120
+A RRL +PY+ L+L + + A +L + L+ T+R +++ D
Sbjct: 231 QAELRRLLKSKPYENCLLVL-----LNVQNAKAWN---AFNLSCKILL---TTRFKQVTD 279
Query: 121 TVMALLLGLLRRTHLLARH-----------ALSASGWLG-SVQPLCRGMRRCRGLVLGIV 168
+ A TH+ H +L +L Q L R + L I+
Sbjct: 280 FLSA-----ATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSII 333
Query: 169 GRSASARALATR------------SLSFKMSVLYFDVPEGKGK----VTFPSAAR----- 207
S R + + S+ + E + FP +A
Sbjct: 334 A--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 208 ------------RMDTLNDLLAASDV--------ISLHCAVTDETIQIINAECLQHIKPG 247
M +N L S V IS+ + +++ N L H
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRS-- 448
Query: 248 AFLV---NTGSSQLLDDCAVKQLLIDGTLA---GCALDGAEGPQWMEAWVREMPNVLILP 301
+V N + DD L D G L E P+ M V +
Sbjct: 449 --IVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNIEHPERMT----LFRMVFL-- 498
Query: 302 RSADYSEEVWME--IRDKAI------SVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQY 353
D+ ++E IR + S+L T K I D + + + I +
Sbjct: 499 ---DFR---FLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 354 NKLDKVSTLEGSVGGQLTDDIQVS---PEDSLKKGISWSRDSPSQLQ 397
L K+ E + + TD ++++ ++++ + ++ Q+Q
Sbjct: 552 --LPKIE--ENLICSKYTDLLRIALMAEDEAIFE------EAHKQVQ 588
Score = 41.0 bits (95), Expect = 0.001
Identities = 54/385 (14%), Positives = 117/385 (30%), Gaps = 108/385 (28%)
Query: 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN------AISDTEGCENE 345
E+ ++++ + + ++ + K ++Q F + V+ N I TE +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIK-TEQRQPS 106
Query: 346 IDDE--IEQYNKLDKVSTLEGSVGGQLTDDIQVS---PEDSLKKGISWSRDSPSQ---LQ 397
+ IEQ ++L Q+ VS P L++ + P++ +
Sbjct: 107 MMTRMYIEQRDRLYN--------DNQVFAKYNVSRLQPYLKLRQAL--LELRPAKNVLID 156
Query: 398 GSGFSQNSANTKSDGRRSRSGK-----KAKKRHARQK---------SLQKPDDPSALEK- 442
G G SGK + Q +L+ + P + +
Sbjct: 157 GVL-----------G----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 443 -ESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLSRSSKK-----LS 496
+ ++ D + + + + K I SIQ + L + L
Sbjct: 202 LQKLLYQID----------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 497 EV-SGETLK--DGYV-VALYARDRP---ALHISRQRHKGGGWILETMSNVTKRDPA---A 546
V + + + + L R + L + H + +T +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLL 308
Query: 547 QFLICKSKDTIGLRSFTAGGKLLQINRRMEFVFA---SHSFDAWESW------AIEGPLE 597
++L C+ +D L +++ + A W++W + +E
Sbjct: 309 KYLDCRPQD---LPREVLTTNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 598 ECRLVNCRNPLVF--FFFYF--FPK 618
+N P + F FP
Sbjct: 361 SS--LNVLEPAEYRKMFDRLSVFPP 383
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 44.2 bits (104), Expect = 6e-05
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 7/99 (7%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAA 218
G + ++G ++A + + V + L
Sbjct: 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRD 213
Query: 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257
DV ++ A L + F+++ S
Sbjct: 214 VDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKP 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.002
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 19/43 (44%)
Query: 482 ESTS-KKLSRSSKKLSEVSGETLKDGYVVALYARDR-PALHIS 522
E + KKL S LK LYA D PAL I
Sbjct: 18 EKQALKKLQAS-----------LK------LYADDSAPALAIK 43
Score = 32.2 bits (72), Expect = 0.20
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 419 KKA-KKRHARQKSLQKPDDPSALEKEST 445
K+A KK A K L D AL ++T
Sbjct: 19 KQALKKLQASLK-LYADDSAPALAIKAT 45
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A*
2k7s_A 2a24_B
Length = 121
Score = 32.2 bits (74), Expect = 0.15
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 501 ETLKDGYVVALYARDRPALHISRQRHKGGGWI-LETMSNVTKRDP---AAQFLICKSKD 555
+ L+D + + + + + R R K W+ + T S ++P +++IC + +
Sbjct: 57 QLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTF-QNPYSDEIEYIICTNTN 114
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 33.5 bits (76), Expect = 0.19
Identities = 12/92 (13%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVIS 223
+LG G+ + + + ++ +G+ + + + +DV+
Sbjct: 16 ILGAGGKMGARITRKIHDSAHH--LAAIEIAP-EGRDRLQGMGIPLTDGDGWIDEADVVV 72
Query: 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255
L A+ D I+ + + + ++PG ++ +
Sbjct: 73 L--ALPDNIIEKVAEDIVPRVRPGTIVLILDA 102
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian
clock, PAS domain, transcription, activator, biolo
rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Length = 121
Score = 30.7 bits (70), Expect = 0.51
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 501 ETLKDGYVVALYARDRPALHISRQRHKGGGWI-LETMSNVTKRDP---AAQFLICKSKDT 556
L D + L ++++ + R K G ++ L++ +P ++++ +
Sbjct: 58 NNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQWFSF-TNPDTKELEYIVSVNTLV 116
Query: 557 IG 558
+G
Sbjct: 117 LG 118
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 30.4 bits (69), Expect = 1.8
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 29/87 (33%)
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLN------------------DLLAASDVISLHCAVT 229
VL+ + GK K R + N + +D+ +
Sbjct: 162 VLFSEDDVGKNKTE--VIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIW-VVS--A 216
Query: 230 D---ETIQIINAECLQHIKP---GAFL 250
D I +N C++ +P ++
Sbjct: 217 DHPFNLINWVNKYCVRANQPYINAGYV 243
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 30.5 bits (69), Expect = 2.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 519 LHISR-QRHKGGGWILETMSNVTKRDPAAQFLIC 551
+SR KG ++E V ++ P Q L+
Sbjct: 235 TQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLV 268
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.2
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
Query: 372 DDIQVSPEDSLKKGISW---------SRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAK 422
D + PE S++K W D+ S++ + + + + + +S + K
Sbjct: 78 DRLTQEPE-SIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 423 -KRHARQKS---LQKPDD 436
K + R Q+PD
Sbjct: 134 NKINNRIADKAFYQQPDA 151
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 29.0 bits (65), Expect = 3.2
Identities = 8/56 (14%), Positives = 22/56 (39%)
Query: 414 RSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEE 469
R GK A+ + R + ++ + +++ + T +++ +PE
Sbjct: 108 RELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPET 163
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 29.1 bits (64), Expect = 4.3
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 453 AMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLSRSSKKLSEVSG 500
+ S RC E L ESI+ S+ + LS+
Sbjct: 27 SDEALPLGSPRCDLKENLLKDNCAPESIEFPVSEARVLEDRPLSDKGS 74
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A
3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A*
1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Length = 136
Score = 28.1 bits (61), Expect = 5.4
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 406 ANTKSDGRRSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTD-QASSRC 464
A TK R+S GK +K+ A + + + ++K Q S+
Sbjct: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 61
Query: 465 ASPEELRSRKTP 476
+ R
Sbjct: 62 LIRKLPFQRLVR 73
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 28.9 bits (64), Expect = 6.0
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 3/131 (2%)
Query: 377 SPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHARQKSLQKPDD 436
S+ W+R P K + G R R D
Sbjct: 27 KGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSR-DRNIGAPGQDT 85
Query: 437 PSALEKEST--SHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLSRSSKK 494
P + S + A + + S P L S P + + + ++ +
Sbjct: 86 PGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEG 145
Query: 495 LSEVSGETLKD 505
SG L+
Sbjct: 146 EPGRSGLELEP 156
>3ccy_A Putative TETR-family transcriptional regulator; APC88698,
structural G PSI-2, protein structure initiative; HET:
MSE; 2.01A {Bordetella parapertussis 12822}
Length = 203
Score = 28.1 bits (63), Expect = 6.9
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 23/99 (23%)
Query: 59 AAAAVLLHSLAYLPRAAQRRLRPYQ--------LILCLGSSD---RTVDSALAADLGLRL 107
V+L L LP ++ L Q L D + + L +
Sbjct: 107 DRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLFFGM 166
Query: 108 IHVDTSR---------AEEIADTVMALLLGLLRRTHLLA 137
I+ T + +A+ + L L +LL+
Sbjct: 167 IN-WTYTWYKADGSVSPDALAERTVQLFLDGYL--NLLS 202
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 28.8 bits (64), Expect = 7.2
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 12/49 (24%)
Query: 267 LLID------GTL---AGCALDGAEGPQWMEAWVRE---MPNVLILPRS 303
+L+D GTL AG +DG + W+E E L R+
Sbjct: 155 MLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRT 203
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 28.3 bits (64), Expect = 7.2
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 296 NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNK 355
NV I RS++ EE I +S Q ++ +G + I+ ++Q+ K
Sbjct: 32 NVTITGRSSERLEETRQIILKSGVSEKQVNSVVA-----DVTTEDGQDQIINSTLKQFGK 86
Query: 356 LD 357
+D
Sbjct: 87 ID 88
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 28.5 bits (63), Expect = 7.3
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 458 DQASSRCASPEELRSRKTPIESIQESTSKKLSRSSKKLSEVSG 500
S RC E L ESI+ S+ + LS+
Sbjct: 32 PLGSPRCDLKENLLKDNCAPESIEFPVSEARVLEDRPLSDKGS 74
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker
complexed with non-BRCT protein, three-helix bundle,
parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4
c.15.1.4 PDB: 1gzh_B
Length = 259
Score = 28.2 bits (62), Expect = 7.6
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 483 STSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKR 542
+TS KL+ SK +G + ++ + + ++ + Q G G+ILE +
Sbjct: 27 TTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQ--YTESQLRAGAGYILEDFNEAQCN 84
Query: 543 DPAAQFLICKS 553
LI
Sbjct: 85 TAYQCLLIADQ 95
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 28.5 bits (63), Expect = 8.1
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 461 SSRCASPEELRSRKTPIESIQESTSKKLSRSSKKLSEV 498
S RC + +L R + I + TS ++ +
Sbjct: 37 SIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQK 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,370,107
Number of extensions: 574381
Number of successful extensions: 1367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 75
Length of query: 620
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 521
Effective length of database: 3,937,614
Effective search space: 2051496894
Effective search space used: 2051496894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)