Query 007043
Match_columns 620
No_of_seqs 53 out of 55
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 18:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 99.9 5.4E-21 1.2E-25 208.3 44.2 280 1-306 32-423 (522)
2 PF05701 WEMBL: Weak chloropla 99.1 6.8E-06 1.5E-10 91.0 44.3 349 83-445 59-442 (522)
3 KOG0161 Myosin class II heavy 98.9 0.00082 1.8E-08 84.1 55.1 328 2-350 1103-1484(1930)
4 PRK02224 chromosome segregatio 98.6 0.0024 5.2E-08 73.8 54.6 31 145-175 366-396 (880)
5 PF10174 Cast: RIM-binding pro 98.6 0.0035 7.7E-08 73.1 48.1 240 151-412 289-578 (775)
6 PRK02224 chromosome segregatio 98.5 0.0045 9.8E-08 71.6 55.7 6 574-579 820-825 (880)
7 TIGR00606 rad50 rad50. This fa 98.5 0.0071 1.5E-07 73.8 53.8 353 88-451 711-1088(1311)
8 PF10174 Cast: RIM-binding pro 98.5 0.0068 1.5E-07 70.9 50.1 353 1-385 1-409 (775)
9 TIGR02169 SMC_prok_A chromosom 98.4 0.0066 1.4E-07 70.9 42.0 106 222-331 303-408 (1164)
10 KOG0161 Myosin class II heavy 98.3 0.036 7.9E-07 70.1 56.7 165 221-385 1288-1480(1930)
11 COG1196 Smc Chromosome segrega 98.2 0.021 4.5E-07 69.1 41.1 16 118-133 169-184 (1163)
12 TIGR00606 rad50 rad50. This fa 98.0 0.084 1.8E-06 64.8 49.8 282 67-373 798-1087(1311)
13 TIGR02169 SMC_prok_A chromosom 98.0 0.067 1.4E-06 62.8 45.7 29 84-112 182-210 (1164)
14 TIGR02168 SMC_prok_B chromosom 98.0 0.068 1.5E-06 62.3 54.7 44 225-268 675-718 (1179)
15 PF07888 CALCOCO1: Calcium bin 97.9 0.076 1.7E-06 60.2 39.6 116 224-371 280-395 (546)
16 TIGR02168 SMC_prok_B chromosom 97.8 0.14 2.9E-06 59.9 58.6 37 408-444 899-935 (1179)
17 PF07888 CALCOCO1: Calcium bin 97.8 0.13 2.8E-06 58.3 41.9 163 189-386 280-449 (546)
18 PF00261 Tropomyosin: Tropomyo 97.7 0.036 7.7E-07 55.9 26.0 160 77-258 76-235 (237)
19 COG1196 Smc Chromosome segrega 97.6 0.4 8.6E-06 58.4 43.6 73 222-294 844-916 (1163)
20 KOG4674 Uncharacterized conser 97.5 0.54 1.2E-05 59.6 49.9 264 76-357 813-1123(1822)
21 PF00261 Tropomyosin: Tropomyo 97.5 0.052 1.1E-06 54.7 24.5 218 85-303 7-224 (237)
22 KOG4673 Transcription factor T 97.3 0.62 1.4E-05 54.3 42.6 301 6-343 342-672 (961)
23 PRK03918 chromosome segregatio 97.2 0.71 1.5E-05 53.6 55.9 13 412-424 682-694 (880)
24 PF01576 Myosin_tail_1: Myosin 97.2 9.4E-05 2E-09 86.5 0.0 44 1-44 44-87 (859)
25 PF00038 Filament: Intermediat 97.1 0.39 8.5E-06 49.3 30.9 94 76-176 44-137 (312)
26 KOG4674 Uncharacterized conser 96.8 2.9 6.3E-05 53.5 51.6 267 138-410 936-1292(1822)
27 KOG0971 Microtubule-associated 96.7 2.4 5.2E-05 51.0 34.9 246 114-397 265-519 (1243)
28 PF09787 Golgin_A5: Golgin sub 96.5 1.6 3.6E-05 48.9 26.6 274 145-451 105-398 (511)
29 PRK11637 AmiB activator; Provi 96.5 1.7 3.8E-05 47.2 26.7 83 222-304 49-131 (428)
30 PF01576 Myosin_tail_1: Myosin 96.4 0.00075 1.6E-08 79.2 0.0 329 1-371 326-689 (859)
31 PF00038 Filament: Intermediat 96.4 1.4 3E-05 45.3 31.1 82 336-427 198-279 (312)
32 PF09726 Macoilin: Transmembra 96.4 2.5 5.5E-05 49.6 27.8 204 189-421 422-647 (697)
33 KOG0994 Extracellular matrix g 96.0 6.1 0.00013 48.9 31.5 177 16-200 1421-1634(1758)
34 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 1.1 2.3E-05 41.8 17.9 126 227-363 3-128 (132)
35 PRK03918 chromosome segregatio 95.9 5.1 0.00011 46.8 57.3 10 24-33 145-154 (880)
36 KOG0250 DNA repair protein RAD 95.6 8.4 0.00018 47.3 33.5 260 83-395 156-428 (1074)
37 PRK04778 septation ring format 95.4 6.7 0.00014 44.6 34.8 114 338-451 315-431 (569)
38 KOG0971 Microtubule-associated 95.1 11 0.00025 45.7 30.1 188 192-394 255-474 (1243)
39 PF12128 DUF3584: Protein of u 94.9 14 0.0003 45.8 48.2 96 221-319 463-558 (1201)
40 PF12718 Tropomyosin_1: Tropom 94.8 1.9 4.1E-05 41.1 15.9 123 34-176 3-128 (143)
41 COG1842 PspA Phage shock prote 94.6 4.6 0.0001 41.4 19.0 167 2-172 30-220 (225)
42 PF05557 MAD: Mitotic checkpoi 94.5 0.34 7.3E-06 56.1 12.3 69 222-290 359-427 (722)
43 PHA02562 46 endonuclease subun 94.5 9.4 0.0002 42.2 27.3 204 224-430 178-392 (562)
44 PRK11637 AmiB activator; Provi 94.5 9 0.00019 41.8 27.1 28 84-111 45-72 (428)
45 PF09730 BicD: Microtubule-ass 93.9 5.8 0.00013 46.9 20.4 136 253-427 32-170 (717)
46 PF05483 SCP-1: Synaptonemal c 93.7 19 0.00042 42.6 49.2 305 6-328 313-681 (786)
47 KOG0999 Microtubule-associated 93.5 19 0.0004 41.9 23.5 196 189-396 12-225 (772)
48 PF15254 CCDC14: Coiled-coil d 93.4 8.5 0.00018 45.9 20.2 170 226-395 355-542 (861)
49 PF09730 BicD: Microtubule-ass 93.1 24 0.00052 42.0 38.3 112 2-118 33-160 (717)
50 PRK09039 hypothetical protein; 92.6 17 0.00037 39.2 20.1 55 189-243 113-167 (343)
51 PRK09039 hypothetical protein; 92.5 15 0.00033 39.6 19.6 24 222-245 76-99 (343)
52 PF15070 GOLGA2L5: Putative go 92.1 29 0.00063 40.6 35.3 276 89-412 11-309 (617)
53 PRK04863 mukB cell division pr 91.9 47 0.001 42.6 45.1 210 221-451 450-665 (1486)
54 KOG0996 Structural maintenance 91.6 45 0.00097 41.8 39.9 58 398-455 544-601 (1293)
55 PF04012 PspA_IM30: PspA/IM30 91.6 15 0.00033 36.3 19.7 165 3-171 30-218 (221)
56 KOG0996 Structural maintenance 91.0 52 0.0011 41.3 50.7 106 341-453 929-1034(1293)
57 PF05557 MAD: Mitotic checkpoi 91.0 0.066 1.4E-06 61.8 0.0 126 315-448 230-367 (722)
58 PRK04778 septation ring format 90.7 36 0.00077 38.9 39.6 36 222-257 284-319 (569)
59 PF05622 HOOK: HOOK protein; 90.6 0.076 1.7E-06 61.2 0.0 76 94-177 347-426 (713)
60 PF10481 CENP-F_N: Cenp-F N-te 90.5 3.3 7.2E-05 44.0 11.8 59 115-176 4-73 (307)
61 PF09726 Macoilin: Transmembra 90.5 44 0.00096 39.7 27.0 64 89-152 421-501 (697)
62 PF05622 HOOK: HOOK protein; 90.0 0.091 2E-06 60.6 0.0 74 84-158 265-344 (713)
63 KOG0250 DNA repair protein RAD 89.9 61 0.0013 40.3 34.1 65 228-292 324-388 (1074)
64 TIGR01005 eps_transp_fam exopo 89.3 49 0.0011 38.7 21.1 135 102-236 189-332 (754)
65 KOG0999 Microtubule-associated 88.6 56 0.0012 38.3 25.9 172 218-412 6-186 (772)
66 KOG0977 Nuclear envelope prote 88.3 56 0.0012 37.9 31.2 76 150-233 142-217 (546)
67 KOG0933 Structural maintenance 88.0 80 0.0017 39.3 32.1 250 150-443 678-932 (1174)
68 COG0419 SbcC ATPase involved i 87.6 73 0.0016 38.4 55.6 87 84-170 359-445 (908)
69 PF04111 APG6: Autophagy prote 87.2 11 0.00024 40.2 13.1 123 297-445 12-134 (314)
70 KOG0612 Rho-associated, coiled 87.2 95 0.0021 39.3 39.5 93 83-175 505-610 (1317)
71 PF15070 GOLGA2L5: Putative go 86.9 71 0.0015 37.5 25.7 34 394-427 200-233 (617)
72 PF14662 CCDC155: Coiled-coil 85.7 45 0.00097 34.1 20.0 123 189-315 64-186 (193)
73 PF07111 HCR: Alpha helical co 85.4 90 0.002 37.4 36.1 149 225-384 483-633 (739)
74 PF10473 CENP-F_leu_zip: Leuci 84.8 39 0.00085 32.7 17.0 21 157-177 11-31 (140)
75 KOG0977 Nuclear envelope prote 84.6 87 0.0019 36.5 27.7 214 221-450 114-358 (546)
76 PF12128 DUF3584: Protein of u 84.6 1.2E+02 0.0026 38.0 53.3 39 327-365 719-757 (1201)
77 PF12325 TMF_TATA_bd: TATA ele 84.5 15 0.00033 34.5 11.1 46 1-46 21-66 (120)
78 PF14662 CCDC155: Coiled-coil 83.8 55 0.0012 33.5 15.3 64 336-399 4-70 (193)
79 PF15290 Syntaphilin: Golgi-lo 83.5 4.3 9.4E-05 43.3 7.9 59 264-322 70-138 (305)
80 PF08317 Spc7: Spc7 kinetochor 83.5 67 0.0014 34.2 18.0 127 224-354 153-283 (325)
81 PF12325 TMF_TATA_bd: TATA ele 81.7 47 0.001 31.3 13.3 54 337-390 65-118 (120)
82 TIGR02680 conserved hypothetic 81.6 1.6E+02 0.0036 37.4 30.5 30 149-178 749-778 (1353)
83 COG5185 HEC1 Protein involved 81.6 1.1E+02 0.0024 35.4 29.2 257 121-431 295-572 (622)
84 PF06160 EzrA: Septation ring 81.4 1.1E+02 0.0023 35.2 36.3 249 83-339 105-375 (560)
85 PLN03229 acetyl-coenzyme A car 80.0 94 0.002 37.5 17.6 91 36-131 513-614 (762)
86 KOG0976 Rho/Rac1-interacting s 79.6 1.6E+02 0.0035 36.2 47.1 386 26-455 129-603 (1265)
87 PF15290 Syntaphilin: Golgi-lo 79.3 23 0.0005 38.0 11.4 71 70-176 63-137 (305)
88 PF05010 TACC: Transforming ac 78.4 84 0.0018 32.2 24.3 49 298-346 52-100 (207)
89 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.3 59 0.0013 30.3 16.1 108 193-307 4-111 (132)
90 PF06818 Fez1: Fez1; InterPro 78.1 87 0.0019 32.2 15.9 112 142-279 59-183 (202)
91 PRK01156 chromosome segregatio 77.7 1.6E+02 0.0035 35.1 55.4 33 6-38 193-225 (895)
92 COG1579 Zn-ribbon protein, pos 76.7 1E+02 0.0022 32.3 21.9 72 221-292 11-82 (239)
93 PF06008 Laminin_I: Laminin Do 76.5 96 0.0021 31.8 27.7 181 265-450 69-253 (264)
94 KOG0978 E3 ubiquitin ligase in 75.6 1.9E+02 0.0041 34.8 32.0 262 2-302 349-620 (698)
95 PF06160 EzrA: Septation ring 75.2 1.6E+02 0.0035 33.9 34.8 118 335-452 308-428 (560)
96 PHA02562 46 endonuclease subun 75.2 1.4E+02 0.0031 33.2 31.0 27 335-363 414-440 (562)
97 PRK01156 chromosome segregatio 74.7 1.9E+02 0.0042 34.5 56.4 6 574-579 834-839 (895)
98 COG0419 SbcC ATPase involved i 74.7 2E+02 0.0044 34.7 49.4 44 90-133 386-429 (908)
99 PF05911 DUF869: Plant protein 74.3 94 0.002 37.5 15.8 95 84-178 594-688 (769)
100 KOG0249 LAR-interacting protei 74.1 1.2E+02 0.0027 36.6 16.2 101 221-335 164-264 (916)
101 PRK10698 phage shock protein P 74.0 1.1E+02 0.0024 31.3 19.2 161 5-172 33-217 (222)
102 PF00769 ERM: Ezrin/radixin/mo 73.6 94 0.002 32.2 13.9 46 83-135 79-124 (246)
103 PRK10884 SH3 domain-containing 73.3 36 0.00077 34.6 10.6 43 84-136 91-133 (206)
104 cd07655 F-BAR_PACSIN The F-BAR 72.2 1.2E+02 0.0027 31.2 14.5 84 224-307 116-199 (258)
105 PF09789 DUF2353: Uncharacteri 72.0 1.6E+02 0.0034 32.3 20.7 92 278-412 135-226 (319)
106 KOG0994 Extracellular matrix g 71.9 3E+02 0.0064 35.4 38.6 33 229-261 1544-1576(1758)
107 KOG0995 Centromere-associated 71.8 2.1E+02 0.0046 33.7 36.3 204 145-362 290-532 (581)
108 PF12718 Tropomyosin_1: Tropom 71.1 1E+02 0.0022 29.6 14.7 15 163-177 35-49 (143)
109 PF13851 GAS: Growth-arrest sp 71.0 1.2E+02 0.0026 30.5 14.3 79 372-450 52-133 (201)
110 KOG0963 Transcription factor/C 69.8 2.4E+02 0.0052 33.5 38.0 338 112-457 5-423 (629)
111 COG1579 Zn-ribbon protein, pos 69.6 1.5E+02 0.0033 31.1 22.3 23 273-295 28-50 (239)
112 PF10146 zf-C4H2: Zinc finger- 68.5 1.3E+02 0.0029 31.2 13.6 89 317-430 13-101 (230)
113 PF06156 DUF972: Protein of un 68.2 27 0.00059 32.2 7.8 54 336-389 4-57 (107)
114 PF12329 TMF_DNA_bd: TATA elem 67.8 49 0.0011 28.6 8.8 50 83-132 2-51 (74)
115 KOG4807 F-actin binding protei 67.5 2.3E+02 0.0049 32.3 22.0 220 188-430 294-532 (593)
116 PRK10884 SH3 domain-containing 66.0 88 0.0019 31.9 11.6 55 330-384 115-169 (206)
117 KOG0964 Structural maintenance 65.9 3.6E+02 0.0077 34.0 36.4 304 68-401 180-500 (1200)
118 PF04949 Transcrip_act: Transc 65.3 1.5E+02 0.0033 29.5 14.8 75 293-367 69-143 (159)
119 TIGR03185 DNA_S_dndD DNA sulfu 65.1 2.7E+02 0.0059 32.4 33.6 51 375-425 421-471 (650)
120 TIGR02977 phageshock_pspA phag 65.1 1.6E+02 0.0035 29.7 19.2 52 4-55 32-83 (219)
121 TIGR03017 EpsF chain length de 64.8 2.1E+02 0.0046 31.0 21.7 127 108-238 172-300 (444)
122 PF08317 Spc7: Spc7 kinetochor 62.6 2.2E+02 0.0048 30.4 20.1 128 318-447 129-267 (325)
123 PRK13169 DNA replication intia 62.1 39 0.00085 31.5 7.6 52 336-387 4-55 (110)
124 PF08614 ATG16: Autophagy prot 60.8 41 0.00089 33.2 8.1 113 344-456 71-187 (194)
125 KOG4360 Uncharacterized coiled 60.6 3.2E+02 0.0068 32.1 15.6 85 84-172 164-249 (596)
126 PF03915 AIP3: Actin interacti 59.4 3.1E+02 0.0066 31.1 15.2 212 217-445 82-310 (424)
127 COG1340 Uncharacterized archae 58.5 2.7E+02 0.006 30.2 31.5 93 190-296 163-255 (294)
128 PF10473 CENP-F_leu_zip: Leuci 57.9 1.9E+02 0.0041 28.2 14.8 74 187-260 19-92 (140)
129 KOG0612 Rho-associated, coiled 57.8 5.2E+02 0.011 33.3 39.8 207 90-322 547-767 (1317)
130 cd07653 F-BAR_CIP4-like The F- 57.4 2.2E+02 0.0047 28.7 17.7 87 223-309 108-194 (251)
131 smart00787 Spc7 Spc7 kinetocho 57.1 2.8E+02 0.0061 30.0 16.6 14 307-320 270-283 (312)
132 PF09789 DUF2353: Uncharacteri 56.9 3E+02 0.0065 30.2 21.5 37 257-304 191-227 (319)
133 PF10205 KLRAQ: Predicted coil 56.7 1.2E+02 0.0026 28.2 9.7 68 375-449 5-72 (102)
134 KOG0249 LAR-interacting protei 56.4 3.1E+02 0.0066 33.5 15.0 32 84-115 161-196 (916)
135 KOG0980 Actin-binding protein 55.8 5E+02 0.011 32.4 32.0 270 2-333 342-643 (980)
136 PRK15178 Vi polysaccharide exp 55.0 3.2E+02 0.0069 31.1 14.5 173 103-290 212-386 (434)
137 PF15619 Lebercilin: Ciliary p 55.0 2.4E+02 0.0052 28.5 21.2 27 211-237 80-106 (194)
138 PF08614 ATG16: Autophagy prot 54.9 95 0.0021 30.7 9.5 64 342-412 118-181 (194)
139 cd07665 BAR_SNX1 The Bin/Amphi 54.6 2.7E+02 0.0059 29.0 20.0 92 220-315 105-198 (234)
140 PF13851 GAS: Growth-arrest sp 53.5 2.5E+02 0.0055 28.3 22.9 135 222-363 22-159 (201)
141 KOG4643 Uncharacterized coiled 53.5 5.7E+02 0.012 32.4 39.3 113 66-178 175-316 (1195)
142 KOG0239 Kinesin (KAR3 subfamil 53.3 4.7E+02 0.01 31.3 19.5 105 189-293 111-220 (670)
143 KOG1003 Actin filament-coating 53.2 2.8E+02 0.0061 28.8 22.2 89 217-305 106-194 (205)
144 PF14197 Cep57_CLD_2: Centroso 53.2 1.4E+02 0.003 25.7 9.0 65 345-430 3-67 (69)
145 PLN03229 acetyl-coenzyme A car 53.1 5.1E+02 0.011 31.7 22.0 113 7-125 433-569 (762)
146 PF05278 PEARLI-4: Arabidopsis 52.3 3.1E+02 0.0068 29.5 13.2 75 323-401 180-254 (269)
147 PF04156 IncA: IncA protein; 52.0 2.3E+02 0.005 27.4 14.8 96 352-447 93-188 (191)
148 PRK11281 hypothetical protein; 52.0 6.1E+02 0.013 32.3 26.1 36 257-292 301-336 (1113)
149 PF07889 DUF1664: Protein of u 51.6 2.2E+02 0.0048 27.2 10.9 29 138-166 39-67 (126)
150 PF10498 IFT57: Intra-flagella 51.0 2.2E+02 0.0047 31.5 12.2 62 214-275 260-321 (359)
151 PF10498 IFT57: Intra-flagella 49.4 4E+02 0.0087 29.4 14.9 130 89-260 198-327 (359)
152 KOG0933 Structural maintenance 48.6 6.8E+02 0.015 31.8 36.2 201 84-296 682-884 (1174)
153 TIGR01843 type_I_hlyD type I s 48.0 3.6E+02 0.0078 28.5 20.9 26 268-293 202-227 (423)
154 KOG1029 Endocytic adaptor prot 46.8 6.6E+02 0.014 31.2 28.7 58 228-295 525-582 (1118)
155 cd07673 F-BAR_FCHO2 The F-BAR 46.5 3.7E+02 0.008 28.2 19.3 105 190-305 65-179 (269)
156 TIGR03007 pepcterm_ChnLen poly 46.4 4.5E+02 0.0098 29.1 22.2 119 113-238 167-293 (498)
157 PLN02939 transferase, transfer 46.3 7.1E+02 0.015 31.4 21.4 77 84-178 262-339 (977)
158 KOG0964 Structural maintenance 46.0 7.4E+02 0.016 31.5 34.1 147 6-159 187-345 (1200)
159 PF05667 DUF812: Protein of un 45.9 5.7E+02 0.012 30.2 28.4 137 226-377 327-463 (594)
160 PF05276 SH3BP5: SH3 domain-bi 45.8 3.8E+02 0.0083 28.1 23.6 185 90-304 18-212 (239)
161 PF15294 Leu_zip: Leucine zipp 45.7 3.2E+02 0.007 29.4 12.2 136 5-172 134-276 (278)
162 PF04111 APG6: Autophagy prote 45.6 4E+02 0.0086 28.7 13.0 84 222-316 52-135 (314)
163 KOG1003 Actin filament-coating 42.8 4.1E+02 0.0089 27.6 23.4 152 84-257 51-202 (205)
164 PF15294 Leu_zip: Leucine zipp 42.6 2.9E+02 0.0063 29.8 11.3 40 346-385 131-170 (278)
165 PF09787 Golgin_A5: Golgin sub 42.3 5.7E+02 0.012 29.2 29.3 26 407-432 396-421 (511)
166 TIGR02680 conserved hypothetic 41.8 8.9E+02 0.019 31.2 32.5 51 402-452 1092-1145(1353)
167 PF11559 ADIP: Afadin- and alp 41.3 3.1E+02 0.0067 25.8 13.2 58 307-364 65-125 (151)
168 PF04012 PspA_IM30: PspA/IM30 40.9 3.7E+02 0.0081 26.6 17.1 70 320-389 10-79 (221)
169 COG1340 Uncharacterized archae 40.8 5.2E+02 0.011 28.2 29.4 107 150-273 77-183 (294)
170 PF04871 Uso1_p115_C: Uso1 / p 40.6 3.4E+02 0.0073 26.0 12.4 75 96-176 37-111 (136)
171 KOG0804 Cytoplasmic Zn-finger 40.5 4E+02 0.0086 30.8 12.3 96 76-175 348-447 (493)
172 TIGR01843 type_I_hlyD type I s 39.9 4.8E+02 0.01 27.6 22.5 10 597-606 411-420 (423)
173 smart00787 Spc7 Spc7 kinetocho 39.8 5.2E+02 0.011 28.0 19.0 124 319-451 125-259 (312)
174 PF10226 DUF2216: Uncharacteri 39.7 4.5E+02 0.0097 27.2 11.9 93 337-429 20-134 (195)
175 KOG4673 Transcription factor T 39.4 8.1E+02 0.018 30.1 40.8 270 98-396 384-685 (961)
176 PF05565 Sipho_Gp157: Siphovir 39.3 2.6E+02 0.0056 27.2 9.6 67 309-389 23-89 (162)
177 KOG0946 ER-Golgi vesicle-tethe 39.0 8.6E+02 0.019 30.3 26.3 262 113-452 656-939 (970)
178 PF10455 BAR_2: Bin/amphiphysi 37.4 5.2E+02 0.011 28.0 12.2 85 269-355 155-244 (289)
179 KOG2264 Exostosin EXT1L [Signa 36.8 2.1E+02 0.0047 34.0 9.8 69 248-327 79-147 (907)
180 PRK06569 F0F1 ATP synthase sub 36.7 2.8E+02 0.006 27.4 9.4 56 275-330 43-99 (155)
181 TIGR01010 BexC_CtrB_KpsE polys 36.1 5.7E+02 0.012 27.3 16.4 43 91-135 156-198 (362)
182 PF04849 HAP1_N: HAP1 N-termin 35.5 6.3E+02 0.014 27.7 17.1 182 253-453 80-284 (306)
183 cd00176 SPEC Spectrin repeats, 33.3 3.8E+02 0.0083 24.5 18.3 71 277-347 41-111 (213)
184 PRK13729 conjugal transfer pil 33.0 1.2E+02 0.0026 34.8 7.1 55 113-174 68-122 (475)
185 PF06008 Laminin_I: Laminin Do 32.4 5.7E+02 0.012 26.3 28.4 68 221-288 46-113 (264)
186 KOG4196 bZIP transcription fac 32.1 2.2E+02 0.0047 27.8 7.6 55 65-126 31-114 (135)
187 PF04912 Dynamitin: Dynamitin 31.9 7.1E+02 0.015 27.2 22.3 66 162-233 208-281 (388)
188 PF09728 Taxilin: Myosin-like 31.8 6.8E+02 0.015 27.0 31.5 152 218-374 72-264 (309)
189 TIGR03321 alt_F1F0_F0_B altern 31.4 5.9E+02 0.013 26.1 12.3 24 293-316 82-105 (246)
190 PF15619 Lebercilin: Ciliary p 31.3 5.7E+02 0.012 25.9 21.7 74 228-301 27-107 (194)
191 PF10212 TTKRSYEDQ: Predicted 31.2 7.8E+02 0.017 28.9 13.0 45 260-304 460-508 (518)
192 KOG0993 Rab5 GTPase effector R 30.9 8.6E+02 0.019 28.1 12.9 47 6-59 34-80 (542)
193 PF00769 ERM: Ezrin/radixin/mo 30.5 6.4E+02 0.014 26.2 16.1 36 401-436 87-122 (246)
194 cd07675 F-BAR_FNBP1L The F-BAR 30.4 6.8E+02 0.015 26.5 15.2 82 224-312 110-198 (252)
195 PF08647 BRE1: BRE1 E3 ubiquit 29.8 4.1E+02 0.0089 23.8 9.0 62 144-206 5-66 (96)
196 KOG0946 ER-Golgi vesicle-tethe 29.4 1.2E+03 0.026 29.1 19.6 49 257-305 680-728 (970)
197 PF11559 ADIP: Afadin- and alp 28.4 5.1E+02 0.011 24.4 13.3 87 222-315 61-147 (151)
198 PF15450 DUF4631: Domain of un 28.3 1E+03 0.023 28.0 32.3 152 83-272 269-422 (531)
199 PF07106 TBPIP: Tat binding pr 28.2 4.2E+02 0.0091 25.5 9.0 21 187-207 111-131 (169)
200 KOG1962 B-cell receptor-associ 28.2 5.7E+02 0.012 26.7 10.4 50 257-306 153-202 (216)
201 PF05335 DUF745: Protein of un 28.2 6.5E+02 0.014 25.6 12.3 91 84-174 72-162 (188)
202 PF12777 MT: Microtubule-bindi 28.1 4.2E+02 0.009 28.6 9.9 97 224-327 211-310 (344)
203 PRK00409 recombination and DNA 27.6 1.2E+03 0.026 28.4 15.1 53 331-383 511-563 (782)
204 TIGR02977 phageshock_pspA phag 27.5 6.5E+02 0.014 25.4 15.9 127 318-455 9-137 (219)
205 TIGR01010 BexC_CtrB_KpsE polys 27.3 7.9E+02 0.017 26.2 15.1 89 142-236 170-258 (362)
206 COG1382 GimC Prefoldin, chaper 26.8 5.7E+02 0.012 24.5 11.1 58 1-62 8-65 (119)
207 cd07664 BAR_SNX2 The Bin/Amphi 26.7 7.4E+02 0.016 25.7 22.0 90 221-314 106-197 (234)
208 KOG4657 Uncharacterized conser 26.6 8.1E+02 0.018 26.1 15.8 15 482-496 176-190 (246)
209 PF07139 DUF1387: Protein of u 26.2 9E+02 0.019 26.6 15.5 112 278-400 155-267 (302)
210 PRK09973 putative outer membra 26.0 2.7E+02 0.0058 25.3 6.7 46 4-49 25-70 (85)
211 PRK08476 F0F1 ATP synthase sub 25.8 5.7E+02 0.012 24.2 12.7 48 284-331 49-97 (141)
212 PF09325 Vps5: Vps5 C terminal 25.7 6.4E+02 0.014 24.7 22.5 95 222-316 109-203 (236)
213 smart00150 SPEC Spectrin repea 25.5 3.7E+02 0.0079 21.8 7.6 61 277-337 39-99 (101)
214 CHL00019 atpF ATP synthase CF0 24.8 6.6E+02 0.014 24.5 12.2 42 275-316 82-124 (184)
215 PF15254 CCDC14: Coiled-coil d 24.6 6.5E+02 0.014 31.0 11.2 162 246-422 361-541 (861)
216 TIGR00219 mreC rod shape-deter 24.2 1.6E+02 0.0036 31.0 5.9 12 373-384 71-82 (283)
217 TIGR03545 conserved hypothetic 24.1 7.1E+02 0.015 29.1 11.3 120 283-426 164-285 (555)
218 PF07412 Geminin: Geminin; In 24.1 1.3E+02 0.0029 30.9 5.0 54 395-452 117-170 (200)
219 PF14712 Snapin_Pallidin: Snap 23.9 4.7E+02 0.01 22.5 8.5 49 111-159 4-52 (92)
220 PF06810 Phage_GP20: Phage min 23.6 5.3E+02 0.011 25.1 8.8 63 264-334 15-77 (155)
221 PF06428 Sec2p: GDP/GTP exchan 23.5 2.1E+02 0.0047 26.3 5.7 40 11-50 2-42 (100)
222 PF07412 Geminin: Geminin; In 23.4 4E+02 0.0087 27.6 8.2 35 338-372 130-164 (200)
223 cd07656 F-BAR_srGAP The F-BAR 23.0 8.7E+02 0.019 25.2 12.8 90 225-314 115-221 (241)
224 TIGR03495 phage_LysB phage lys 22.9 7.1E+02 0.015 24.2 11.2 32 404-435 69-100 (135)
225 COG4372 Uncharacterized protei 22.7 1.2E+03 0.026 26.8 28.1 90 189-306 78-167 (499)
226 COG1842 PspA Phage shock prote 22.7 8.8E+02 0.019 25.2 17.2 132 323-458 14-147 (225)
227 PF13514 AAA_27: AAA domain 22.6 1.6E+03 0.034 28.2 47.0 87 221-307 751-839 (1111)
228 TIGR01005 eps_transp_fam exopo 22.5 1.3E+03 0.029 27.2 26.7 91 101-207 162-252 (754)
229 KOG4593 Mitotic checkpoint pro 22.4 1.5E+03 0.032 27.7 48.6 163 254-453 376-541 (716)
230 KOG0243 Kinesin-like protein [ 22.3 1.7E+03 0.037 28.4 39.9 218 88-320 406-651 (1041)
231 PF05667 DUF812: Protein of un 22.3 1.4E+03 0.029 27.2 33.0 56 115-174 350-405 (594)
232 PF14988 DUF4515: Domain of un 22.0 8.6E+02 0.019 24.8 21.5 112 153-275 51-176 (206)
233 PF11932 DUF3450: Protein of u 21.9 8.4E+02 0.018 24.9 10.3 76 95-177 23-98 (251)
234 PF07106 TBPIP: Tat binding pr 21.8 7.1E+02 0.015 23.9 9.3 20 317-336 147-166 (169)
235 PF14197 Cep57_CLD_2: Centroso 21.3 5.3E+02 0.012 22.2 7.7 58 373-430 3-60 (69)
236 PF10186 Atg14: UV radiation r 21.3 8.5E+02 0.018 24.5 15.5 22 307-328 26-47 (302)
237 cd07680 F-BAR_PACSIN1 The F-BA 21.2 9.9E+02 0.022 25.3 14.5 37 271-307 163-199 (258)
238 COG2433 Uncharacterized conser 21.1 1.5E+03 0.033 27.4 14.4 107 252-371 389-512 (652)
239 PF14992 TMCO5: TMCO5 family 21.1 9.5E+02 0.021 26.1 10.7 112 336-447 21-160 (280)
240 PF13514 AAA_27: AAA domain 21.0 1.7E+03 0.037 27.9 46.4 95 84-178 478-586 (1111)
241 PRK15396 murein lipoprotein; P 20.6 4.5E+02 0.0097 23.4 6.9 47 3-49 25-71 (78)
242 KOG0995 Centromere-associated 20.6 1.5E+03 0.032 27.1 32.4 53 125-177 221-273 (581)
243 cd07654 F-BAR_FCHSD The F-BAR 20.5 7.9E+02 0.017 26.0 10.0 42 226-274 116-157 (264)
244 PF11172 DUF2959: Protein of u 20.3 9.8E+02 0.021 24.9 19.9 114 232-350 26-143 (201)
245 TIGR03185 DNA_S_dndD DNA sulfu 20.2 1.4E+03 0.031 26.7 33.1 17 189-205 297-313 (650)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.92 E-value=5.4e-21 Score=208.29 Aligned_cols=280 Identities=32% Similarity=0.431 Sum_probs=234.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhh----------------
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNE---------------- 64 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~e~~---------------- 64 (620)
.|.+|..+|++|.++++||..++.+|.+|++||..+||++++.+.+|+.+...++.|...++..
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~ 111 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEAS 111 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccch
Confidence 3789999999999999999999999999999999999999999999999999999988655320
Q ss_pred -------------------hh---HHHHHHH--------------H---------------------HhhHHhhH-----
Q 007043 65 -------------------TL---SKELKVK--------------E---------------------KNIESLKK----- 82 (620)
Q Consensus 65 -------------------~l---~~EL~i~--------------e---------------------~~i~~LK~----- 82 (620)
.| .+||... . .+|..||+
T Consensus 112 ~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 112 VAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1444200 0 13555554
Q ss_pred -----------------------HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH-------
Q 007043 83 -----------------------EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEK------- 132 (620)
Q Consensus 83 -----------------------~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~------- 132 (620)
.|+..|.+.+..|+.|+.++..++..+++.... ..-+..|..+|..
T Consensus 192 ~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a----~~~l~~Lq~El~~~~~~~l~ 267 (522)
T PF05701_consen 192 KLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEA----SAELESLQAELEAAKESKLE 267 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 378889999999999999999999888855432 2333333333333
Q ss_pred ----hhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHH
Q 007043 133 ----RKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKL 208 (620)
Q Consensus 133 ----a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~ 208 (620)
.+.....+..+|.+++++|++++..|+.++.++.+|+..| ++|+++|..++.+.
T Consensus 268 ~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~v----------------------esL~~ELe~~K~el 325 (522)
T PF05701_consen 268 EEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASV----------------------ESLRSELEKEKEEL 325 (522)
T ss_pred hhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 3445555667799999999999999999999999888865 55667778888888
Q ss_pred HhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 007043 209 AISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEEL 288 (620)
Q Consensus 209 ~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~L 288 (620)
....+++..+.+.|+.|..++++++.+|..++.++.+.+.+|++|..+|+.++.|+.++|......+.|+..++.+++..
T Consensus 326 ~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ 405 (522)
T PF05701_consen 326 ERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQT 405 (522)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHh
Q 007043 289 KLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 289 k~~Lk~teekye~mLDEa 306 (620)
+..++.++.+|+.++.++
T Consensus 406 ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 406 KAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999874
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.10 E-value=6.8e-06 Score=90.96 Aligned_cols=349 Identities=25% Similarity=0.254 Sum_probs=206.8
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHh------hhhHHhhhhhHHHHHHHHHhhhh
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKR------KESEKKMFDSFAAQTKQLEQTMI 156 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a------~esE~~~~eSL~sqtKqLE~tk~ 156 (620)
.+-..|-.--..|++|+..|..+......|..-..--+-++.+|+.....- .+.+ .+=+-..+++..|+.++-
T Consensus 59 ~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele-~~~~q~~~~~~eL~~~k~ 137 (522)
T PF05701_consen 59 QALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELE-SAREQYASAVAELDSVKQ 137 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344555566778999999999999888888887777788888887654321 0111 011334455555555555
Q ss_pred hhhhhhhhHHHHHH-HHHhhhhh--hhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHH
Q 007043 157 VFEESKFEINSLRE-KLKKLESR--DLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLK 233 (620)
Q Consensus 157 lLeeaesEIasLke-kv~~LE~~--~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~ 233 (620)
-|.-.+.+++++-+ +...+-.. +... +-.....|+.|..++..+++..-.+.-.-.-+--...++..++....
T Consensus 138 EL~~lr~e~~~~~~~k~~A~~~aeea~~~----a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~ 213 (522)
T PF05701_consen 138 ELEKLRQELASALDAKNAALKQAEEAVSA----AEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDA 213 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666543 33333221 1111 11234567777777777777665442211111222333333333333
Q ss_pred HHHhHh-HHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHh-h-----------------HHHHHHHHHh
Q 007043 234 NELKLV-TGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKA-E-----------------SEELKLKLKN 294 (620)
Q Consensus 234 ~EL~~a-~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~a-q-----------------ie~Lk~~Lk~ 294 (620)
..++.. .+.+++...--.++ .+...+-...-.+...+...|.+|..+.. . +...+.-|..
T Consensus 214 ~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ 292 (522)
T PF05701_consen 214 EEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEE 292 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHH
Confidence 333332 22333333333333 55566666666677777777777776665 2 2222333333
Q ss_pred hHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 007043 295 IEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAK 374 (620)
Q Consensus 295 teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~ 374 (620)
+ ..-|+.++.|+.+|+.+|+.|+.|....+.+-.. +-.....+.-.+.++..+++++-.-|..+.......+
T Consensus 293 a----k~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~----lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k 364 (522)
T PF05701_consen 293 A----KKELEKAKEEASSLRASVESLRSELEKEKEELER----LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK 364 (522)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh
Confidence 3 3346677778899999999999998776644321 1111233344556666666666655544444444445
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHH
Q 007043 375 EETLKLRDILKQAINEANV-------AKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKK 445 (620)
Q Consensus 375 eE~~kLrd~LKqa~~Ean~-------a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~ 445 (620)
+.-..|--.|.++-.|+.. +++-+..++.|..+.|-.+..-+.-|+....+.+..|..|+.|+..|+-|+.
T Consensus 365 ~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e 442 (522)
T PF05701_consen 365 EAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSE 442 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555566666655555555 4445555577777888889999999999999999999999999999998765
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.89 E-value=0.00082 Score=84.07 Aligned_cols=328 Identities=19% Similarity=0.210 Sum_probs=151.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhh-HHHHh-hhhhhhhhhhhhhhHHHHHHHHHhhHH
Q 007043 2 QQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRL-SETMS-TRKAADIYTMNETLSKELKVKEKNIES 79 (620)
Q Consensus 2 q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL-~eal~-a~k~ae~~~e~~~l~~EL~i~e~~i~~ 79 (620)
|+++.-++++|..-+.+...+++.|..+..+|...+.--++..... .-... .+++++...-+..+..+----+..|..
T Consensus 1103 ~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~ 1182 (1930)
T KOG0161|consen 1103 EARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEE 1182 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5677778888888888888888888888888888887777773322 22222 222222221110011111111122333
Q ss_pred hhHHHHHHHHhhhhhHHHHh----------------------------hhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 007043 80 LKKEWEIKLVEKDASLDELK----------------------------GTLSNAKSSEAHAMSLYSESKKKLQELELEVE 131 (620)
Q Consensus 80 LK~~~E~kl~E~e~~ie~L~----------------------------~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele 131 (620)
|+......++++...+++|. .+-.++-.........+.+...++..+...+-
T Consensus 1183 lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~ 1262 (1930)
T KOG0161|consen 1183 LRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRN 1262 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433 33333322222222333333333333333221
Q ss_pred HhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh-hhhhcccC------------cccchhhHHHHH
Q 007043 132 KRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESR-DLNASQSG------------LAGTNETVEFLN 198 (620)
Q Consensus 132 ~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~-~~~~~~~e------------~~~lq~~ve~Lk 198 (620)
..+.-..-.|.++......|++++..+.++......+... .....+.+ ...++.++..|+
T Consensus 1263 -------~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~ 1335 (1930)
T KOG0161|consen 1263 -------DLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLR 1335 (1930)
T ss_pred -------HHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223334455555555555666665555544444322 00011100 122233334444
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHH-------
Q 007043 199 SELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKL------- 271 (620)
Q Consensus 199 sele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekl------- 271 (620)
..++.-.+.+..- .+..+-....+.+.+.+....+....++-+..||-.-....++.+.--.+...-..|
T Consensus 1336 e~leee~e~~~~l---~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l 1412 (1930)
T KOG0161|consen 1336 EQLEEEQEAKNEL---ERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRL 1412 (1930)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222211 112222222333344444444444333333333333333333333333333222222
Q ss_pred ----hhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHH
Q 007043 272 ----TSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEE 347 (620)
Q Consensus 272 ----l~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEE 347 (620)
-+.+.++++.+.-+..|...++ +|..+|++ |++..+.+..+.+.+..+|+..++.+..|....++
T Consensus 1413 ~~el~d~~~d~~~~~~~~~~le~k~k----~f~k~l~e-------~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1413 QQELEDLQLDLERSRAAVAALEKKQK----RFEKLLAE-------WKKKLEKLQAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2223333333333333333333 34556654 78889999999999999999999999988888776
Q ss_pred HHh
Q 007043 348 ERD 350 (620)
Q Consensus 348 E~~ 350 (620)
-+.
T Consensus 1482 ~~e 1484 (1930)
T KOG0161|consen 1482 LLE 1484 (1930)
T ss_pred HHH
Confidence 544
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=98.65 E-value=0.0024 Score=73.81 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHhh
Q 007043 145 AAQTKQLEQTMIVFEESKFEINSLREKLKKL 175 (620)
Q Consensus 145 ~sqtKqLE~tk~lLeeaesEIasLkekv~~L 175 (620)
...+++++.....++..+.++..|+..+..+
T Consensus 366 ~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444
No 5
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.60 E-value=0.0035 Score=73.12 Aligned_cols=240 Identities=25% Similarity=0.340 Sum_probs=149.1
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHhhhhhhhh-------------hcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 007043 151 LEQTMIVFEESKFEINSLREKLKKLESRDLN-------------ASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKE 217 (620)
Q Consensus 151 LE~tk~lLeeaesEIasLkekv~~LE~~~~~-------------~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ 217 (620)
++..+.-|..++.||-.|+-++..+...+.. +-.....-||..|+.|+.+|+....-. +-
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l-----~k-- 361 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL-----EK-- 361 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HH--
Confidence 5566666666666666666666555443100 011123568999999999998865443 11
Q ss_pred HHHHHhhHHHHHHHHHHHHhHhHHHHHhhh-------hhHHHHHHHHHHHhHHHHHHHHHHh---------hhHHHHHHH
Q 007043 218 SLLKVRSLLEEVRFLKNELKLVTGAEENNQ-------KALDDLALALKEVALEASQAKEKLT---------STEAELEVK 281 (620)
Q Consensus 218 ass~i~~L~EEk~~L~~EL~~a~~eEEKsK-------KAMEdLA~AL~EVS~EAreaKekll---------~~Q~ElE~a 281 (620)
..-++..+.+|+..+..||..-++.-++.. +-.|.|-..|++=.......++||. ..+..|+-|
T Consensus 362 k~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea 441 (775)
T PF10174_consen 362 KQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEA 441 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 233577788888888888877766655443 4478888889998899999999999 566777788
Q ss_pred HhhHHHHHHHHHhhHHHHH----HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHH-----------------H
Q 007043 282 KAESEELKLKLKNIEDSHK----LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFV-----------------D 340 (620)
Q Consensus 282 ~aqie~Lk~~Lk~teekye----~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV-----------------~ 340 (620)
..+-+++...|....+..+ .=++--+.++.-|+.+++.|+.+. -.+++.|. +
T Consensus 442 ~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-------sEk~~~l~~~kee~s~l~s~~~K~~s 514 (775)
T PF10174_consen 442 LREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-------SEKELQLEDAKEEASKLASSQEKKDS 514 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHhhhHHHHHhhccchhhh
Confidence 8877777777765432221 233444445555555555555443 33333222 1
Q ss_pred HHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhH
Q 007043 341 CIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDAL 412 (620)
Q Consensus 341 ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L 412 (620)
-|++.+-++...+.+..+|..-+.. .+. +.++++-+.....++...++-++-|++|.-+|-+.|
T Consensus 515 ~i~~l~I~lEk~rek~~kl~~ql~k-------~~~-~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L 578 (775)
T PF10174_consen 515 EIERLEIELEKKREKHEKLEKQLEK-------LRA-NAELRDRIQQLEQEVTRYREESEKAQAEVERLLDIL 578 (775)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-------HHh-CHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455555555555555555554433 111 234555556666777778888888999999988875
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=98.55 E-value=0.0045 Score=71.61 Aligned_cols=6 Identities=17% Similarity=-0.069 Sum_probs=2.5
Q ss_pred CCCCCC
Q 007043 574 DLDNLE 579 (620)
Q Consensus 574 ~fD~~d 579 (620)
.|-++|
T Consensus 820 p~~~lD 825 (880)
T PRK02224 820 PTVFLD 825 (880)
T ss_pred CcccCC
Confidence 344444
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=0.0071 Score=73.77 Aligned_cols=353 Identities=12% Similarity=0.114 Sum_probs=174.5
Q ss_pred HHhhhhhHHHHhhhHHHhhhhHHHHh-------hHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhh
Q 007043 88 LVEKDASLDELKGTLSNAKSSEAHAM-------SLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEE 160 (620)
Q Consensus 88 l~E~e~~ie~L~~el~~Ak~aes~a~-------~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLee 160 (620)
..++++.+...+..+...+....... .-+.+++.++..++.++.....--..+--.|...+..++...+++.+
T Consensus 711 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~ 790 (1311)
T TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD 790 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555555555555554432221 22445666666777666655543333333344444555555555554
Q ss_pred h------hhhHHHHHHHHHhhhhhhh-hhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHH-
Q 007043 161 S------KFEINSLREKLKKLESRDL-NASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFL- 232 (620)
Q Consensus 161 a------esEIasLkekv~~LE~~~~-~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L- 232 (620)
. ..+|..|+.+|..|+.... ..++.....++..|..+..++..+..... .....+..+..++..|
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e-------~l~~e~e~~~~eI~~Lq 863 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE-------LNRKLIQDQQEQIQHLK 863 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4 7788888888888876411 11111122344444444444444433221 1222344444445555
Q ss_pred --HHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHH
Q 007043 233 --KNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEA 310 (620)
Q Consensus 233 --~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~ 310 (620)
..++..-+..-.+.-.-..+|...|.+...+..+....+.....+++.....++.+...+..+....+.....+..++
T Consensus 864 ~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1311)
T TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV 943 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222233444455555555555555554444444454444555555544444444455556666666
Q ss_pred HHHHhhHHHHHHHH---HHHHHHHhHhhhhHHHH---HHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007043 311 DLYRNTADRLTLEA---EESLLAWNEKETRFVDC---IKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDIL 384 (620)
Q Consensus 311 ~~lk~tverl~~Ea---~~s~~eW~~KE~~fV~c---iK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~L 384 (620)
.-|+.++..+..-. ..+...= ....+-.| +...+..+..++.++..+-..++...............+++.|
T Consensus 944 ~~~~~~~~~~~~~~~~i~~y~~~~--~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL 1021 (1311)
T TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDG--KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL 1021 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665554332 2222211 11112111 1222455666777777777777777777777777777777777
Q ss_pred HHH--HHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhh
Q 007043 385 KQA--INEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESS 451 (620)
Q Consensus 385 Kqa--~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~ 451 (620)
... ..+.......+..=..++..+ ....=..++..+..++..|...=+..+..++.|...|....
T Consensus 1022 ~~~~~~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~ 1088 (1311)
T TIGR00606 1022 TLRKRENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFK 1088 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 533 444444444333333333332 11233444555666666666666666666666665555543
No 8
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.49 E-value=0.0068 Score=70.85 Aligned_cols=353 Identities=18% Similarity=0.247 Sum_probs=181.3
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHH--------HHHHHHHHHHHHHhhHHHHhhhhhhhhhhhh-----hhhH
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDE--------LHEMKRMAQEANMRLSETMSTRKAADIYTMN-----ETLS 67 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dE--------L~eakk~AdEan~kL~eal~a~k~ae~~~e~-----~~l~ 67 (620)
+|+||..+|.+.-..+.-|.....+=++...+ |+..+-+.++.+.+|.-.=.-=+..-...++ ..|.
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq 80 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ 80 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47888888888777777777766665555544 4557777887777764332111111122222 2345
Q ss_pred HHHHHHHHhhHHhhHHHHHHHHhhh---------hhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 007043 68 KELKVKEKNIESLKKEWEIKLVEKD---------ASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEK 138 (620)
Q Consensus 68 ~EL~i~e~~i~~LK~~~E~kl~E~e---------~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~ 138 (620)
.|| .+..+|.+|...++..-.+.+ +.+..|..+...+..-=.....-+++...+++.+-..++++..+=.
T Consensus 81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~ 159 (775)
T PF10174_consen 81 EEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIE 159 (775)
T ss_pred HHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677 666677777774433333332 3333344443333332222223333333333333344445555544
Q ss_pred hhhhhHHH------HHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhh--h-h------hcccCcc---cchhhHHHHHHH
Q 007043 139 KMFDSFAA------QTKQLEQTMIVFEESKFEINSLREKLKKLESRD--L-N------ASQSGLA---GTNETVEFLNSE 200 (620)
Q Consensus 139 ~~~eSL~s------qtKqLE~tk~lLeeaesEIasLkekv~~LE~~~--~-~------~~~~e~~---~lq~~ve~Lkse 200 (620)
++.+-|.+ ...+-......+.+.+..+..|+.-+...+... . . ...++.. .+|+.|+---
T Consensus 160 kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd-- 237 (775)
T PF10174_consen 160 KLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKD-- 237 (775)
T ss_pred HHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHH--
Confidence 55554410 011111233356667777777776666666541 0 0 0111111 1222222221
Q ss_pred HHHHHHHHHhhhhhhhhHHH--HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHH-------HHhHHHHHHHHHH
Q 007043 201 LQLAKDKLAISEKNEKESLL--KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALK-------EVALEASQAKEKL 271 (620)
Q Consensus 201 le~~~e~~~~Al~nEk~ass--~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~-------EVS~EAreaKekl 271 (620)
.+.++. ++..|-.|+.+|.+-+..+...-+.--|.|+.-=+... .+..+....+.-+
T Consensus 238 --------------~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~ 303 (775)
T PF10174_consen 238 --------------TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSEL 303 (775)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112221 34445666666666555444432222223332222222 2333333333333
Q ss_pred hhhHHHHHH-------HHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHh
Q 007043 272 TSTEAELEV-------KKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKR 344 (620)
Q Consensus 272 l~~Q~ElE~-------a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~ 344 (620)
..+|..++. ++.-|+-|+.+|.+.+. +...|..-|++|+.+.+......+.|... |-.
T Consensus 304 ~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~-----------~~~~Lqsdve~Lr~rle~k~~~l~kk~~~----~~~ 368 (775)
T PF10174_consen 304 EALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ-----------EAEMLQSDVEALRFRLEEKNSQLEKKQAQ----IEK 368 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 333333332 23334444444444444 44455555899999999999888888765 455
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007043 345 AEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILK 385 (620)
Q Consensus 345 sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LK 385 (620)
+.+|.+.+..|+..|-+-+.-++..+.++......|.+.|+
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888777777777666666663
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.42 E-value=0.0066 Score=70.94 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=48.9
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
+..+..++..+..+|........+..+.++.+...+.+...+..+....+...+.++..+..++..++..+...+..|.
T Consensus 303 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~- 381 (1164)
T TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA- 381 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333444444444444444444444444444444444444444444555555555555555555555444443333332
Q ss_pred HHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 007043 302 QLDELKKEADLYRNTADRLTLEAEESLLAW 331 (620)
Q Consensus 302 mLDEa~~E~~~lk~tverl~~Ea~~s~~eW 331 (620)
+...++.-+++.+..+..+.......+
T Consensus 382 ---~~~~~~~~~~~~l~~l~~~~~~~~~~~ 408 (1164)
T TIGR02169 382 ---ETRDELKDYREKLEKLKREINELKREL 408 (1164)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444555555544444443333
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.28 E-value=0.036 Score=70.08 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=102.3
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhH----
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIE---- 296 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~te---- 296 (620)
.+.++...+..+...|+..+...+..-++--.|+.+|+-+.-++...++.|-.-|.......-++.....-+....
T Consensus 1288 ~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e 1367 (1930)
T KOG0161|consen 1288 KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFE 1367 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666777777777776677777777777777777777777766665554433333333333222222
Q ss_pred ---------------------HHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHh---hhhHHHHHHhhHHHHhhH
Q 007043 297 ---------------------DSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEK---ETRFVDCIKRAEEERDGA 352 (620)
Q Consensus 297 ---------------------ekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~K---E~~fV~ciK~sEEE~~s~ 352 (620)
+.++.+++.++--++.|-++--+|..|++....+-... -..+=--+|+++.-++..
T Consensus 1368 ~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~ 1447 (1930)
T KOG0161|consen 1368 EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEW 1447 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666666666666554333 333334567777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007043 353 QQEHEAMLESLKEAENTTRAAKEETLKLRDILK 385 (620)
Q Consensus 353 ~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LK 385 (620)
+.-.+++..-+..++.+.+....+..+|+..|.
T Consensus 1448 k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~le 1480 (1930)
T KOG0161|consen 1448 KKKLEKLQAELDAAQRELRQLSTELQKLKNALE 1480 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777888888887777777766666666665553
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.22 E-value=0.021 Score=69.10 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 007043 118 ESKKKLQELELEVEKR 133 (620)
Q Consensus 118 EwK~Kv~~LE~ele~a 133 (620)
.++.+.+..+.+|+..
T Consensus 169 ~y~~r~~ea~~~L~~~ 184 (1163)
T COG1196 169 KYKERKEEAERKLERT 184 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=0.084 Score=64.76 Aligned_cols=282 Identities=14% Similarity=0.127 Sum_probs=126.4
Q ss_pred HHHHHHHHHhhHHhhHHH-----HHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 007043 67 SKELKVKEKNIESLKKEW-----EIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMF 141 (620)
Q Consensus 67 ~~EL~i~e~~i~~LK~~~-----E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~ 141 (620)
..++...+..|..|...+ ...+.+++..|..++.++......-.........+...+..|+.++...........
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555521 124455555666666666666555555566666677777777555554443333333
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007043 142 DSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLK 221 (620)
Q Consensus 142 eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~ 221 (620)
. +..+..+..--|.+...++..+...+..+... ...+...+..+.+++..+..........-......
T Consensus 878 ~----~l~~r~~le~~L~el~~el~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1311)
T TIGR00606 878 T----NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ--------DSPLETFLEKDQQEKEELISSKETSNKKAQDKVND 945 (1311)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 22244444444555555555555555444321 11234444555555544444333332222222223
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
++....++..|-.++..-.+. ..-.-.+++...|..+.... ...+.++.....+|..++..+.+.....+.
T Consensus 946 ~~~~~~~~~~~~~~i~~y~~~--~~~~qL~~~e~el~~~~~~i-------e~le~e~~~l~~~i~~l~kel~~~~~~kr~ 1016 (1311)
T TIGR00606 946 IKEKVKNIHGYMKDIENKIQD--GKDDYLKQKETELNTVNAQL-------EECEKHQEKINEDMRLMRQDIDTQKIQERW 1016 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443322111 11222333444444333333 333333444444444444443333333333
Q ss_pred HHHHhhhHHHHH--HhhHHHHHHHHHHHHHHHhHhh-hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 007043 302 QLDELKKEADLY--RNTADRLTLEAEESLLAWNEKE-TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAA 373 (620)
Q Consensus 302 mLDEa~~E~~~l--k~tverl~~Ea~~s~~eW~~KE-~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~ 373 (620)
+-|. +..+ .+-+..+..+....-..|.... ..|-.......++++.+....+.+..-++.-+.+....
T Consensus 1017 l~dn----L~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l 1087 (1311)
T TIGR00606 1017 LQDN----LTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHF 1087 (1311)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 1111 2223333333333333332221 44556666666666666666666666665555544433
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.01 E-value=0.067 Score=62.79 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHH
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHA 112 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a 112 (620)
....+.++...+..|...+..++.....+
T Consensus 182 ~~~~l~el~~~~~~L~~q~~~l~~~~e~~ 210 (1164)
T TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKA 210 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665554433
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.99 E-value=0.068 Score=62.32 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 007043 225 LLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAK 268 (620)
Q Consensus 225 L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaK 268 (620)
+..++..|..++......-......+..+...+..+..+.+++.
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~ 718 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333333
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.91 E-value=0.076 Score=60.18 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Q 007043 224 SLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQL 303 (620)
Q Consensus 224 ~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mL 303 (620)
.+..+...|+.+|+.+.+.-..++....-|+.-|+.+++- + -...++|..++.|...|+..|..+
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~----R---Drt~aeLh~aRLe~aql~~qLad~-------- 344 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNV----R---DRTMAELHQARLEAAQLKLQLADA-------- 344 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHhhhhHHHHHHHHHHH--------
Confidence 4455666777777777777777777777777766555442 2 344568888888888888766433
Q ss_pred HHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007043 304 DELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTR 371 (620)
Q Consensus 304 DEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~ 371 (620)
..++++...-|..-=..|-..+....+++..+..|+.++-+.+++...+..
T Consensus 345 -----------------~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~q 395 (546)
T PF07888_consen 345 -----------------SLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQ 395 (546)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455666665555566666777778888888888888888765544444
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.81 E-value=0.14 Score=59.92 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=14.4
Q ss_pred hhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 007043 408 LQDALHAKEEALNFICRENEDLKMNEAANIESMKELK 444 (620)
Q Consensus 408 LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs 444 (620)
+...+..-+..+..+.++...++..-......+..+.
T Consensus 899 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~ 935 (1179)
T TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443333333333333
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.76 E-value=0.13 Score=58.35 Aligned_cols=163 Identities=22% Similarity=0.256 Sum_probs=86.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHH-------HHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHh
Q 007043 189 GTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEE-------VRFLKNELKLVTGAEENNQKALDDLALALKEVA 261 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EE-------k~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS 261 (620)
.++.+++.|+-+|+.+++...-.. .++..|..| ..+...||-.|+-+.+..+....|.+++|++..
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSq-------q~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~ 352 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQ-------QEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR 352 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345666677777766655432111 112222222 245666777777666666665566666665554
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHH
Q 007043 262 LEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDC 341 (620)
Q Consensus 262 ~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~c 341 (620)
+.--+-+. ..|...+..+.+|++|+.-+..+++.|. |-+.|...|..-+.+.. +|
T Consensus 353 ~q~~qEk~---~l~~~~e~~k~~ie~L~~el~~~e~~lq----Eer~E~qkL~~ql~ke~------------------D~ 407 (546)
T PF07888_consen 353 SQWAQEKQ---ALQHSAEADKDEIEKLSRELQMLEEHLQ----EERMERQKLEKQLGKEK------------------DC 407 (546)
T ss_pred HHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh------------------hh
Confidence 33333333 2234456667788888888877766554 44444444443333211 33
Q ss_pred HHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007043 342 IKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQ 386 (620)
Q Consensus 342 iK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKq 386 (620)
-+- -++-.++|+..|-.+|+-+..+-.-..+|++.|.+-+.+
T Consensus 408 n~v---qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 408 NRV---QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 345556666666666665555555555555555555433
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.71 E-value=0.036 Score=55.87 Aligned_cols=160 Identities=26% Similarity=0.330 Sum_probs=112.0
Q ss_pred hHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhh
Q 007043 77 IESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMI 156 (620)
Q Consensus 77 i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~ 156 (620)
+.+--..+|.+...-+.-|+.|...|..|+..-..+..-+.+-..|+..+|..|+.+.. .++.+.+..++|
T Consensus 76 ~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe----R~e~~E~ki~eL----- 146 (237)
T PF00261_consen 76 SERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE----RAEAAESKIKEL----- 146 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhchhHHHH-----
Confidence 33333478999999999999999999999999999999999999999999999998776 334444444444
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHH
Q 007043 157 VFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNEL 236 (620)
Q Consensus 157 lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL 236 (620)
+.+|..+...+.+||......+..+ ..+...|..|...|..+... --.+-..|..|-.++..|..+|
T Consensus 147 -----E~el~~~~~~lk~lE~~~~~~~~re-~~~e~~i~~L~~~lkeaE~R-------ae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 147 -----EEELKSVGNNLKSLEASEEKASERE-DEYEEKIRDLEEKLKEAENR-------AEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777888888887522222110 12344455555444444332 2344457888888899999999
Q ss_pred hHhHHHHHhhhhhHHHHHHHHH
Q 007043 237 KLVTGAEENNQKALDDLALALK 258 (620)
Q Consensus 237 ~~a~~eEEKsKKAMEdLA~AL~ 258 (620)
...+..-...++=||..-.-|+
T Consensus 214 ~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 214 EKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877777777766544443
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.4 Score=58.42 Aligned_cols=73 Identities=30% Similarity=0.358 Sum_probs=43.1
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHh
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKN 294 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~ 294 (620)
+..+...+..+...++.....-+..++.+.+|...|...-.+..+....+-.....+..++.+++.+...+..
T Consensus 844 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666666666666666666666666666655555555555555555555543
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.55 E-value=0.54 Score=59.60 Aligned_cols=264 Identities=17% Similarity=0.205 Sum_probs=130.8
Q ss_pred hhHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHH--------------HHHHHHHHHHhh-------
Q 007043 76 NIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKK--------------LQELELEVEKRK------- 134 (620)
Q Consensus 76 ~i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~K--------------v~~LE~ele~a~------- 134 (620)
++..||..++.+.-+...+...+..+|..+++-=.........|++- +..|+.+|....
T Consensus 813 el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~ 892 (1822)
T KOG4674|consen 813 ELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLD 892 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 36666667777777777888888888888888777777777777633 333333333211
Q ss_pred -----hhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHH
Q 007043 135 -----ESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLA 209 (620)
Q Consensus 135 -----esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~ 209 (620)
.-.....++|----.+...++.-|-.+.++|-.+++.+.+++ ..++..+++|+-.+....
T Consensus 893 ~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e---------------qsl~~~ks~lde~~~~~e 957 (1822)
T KOG4674|consen 893 SKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE---------------QSLESVKSELDETRLELE 957 (1822)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhH
Confidence 111111122222222333335555555555555555554444 344455555554443332
Q ss_pred hhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHH-HHHHHHHHhHHHHHH---HHHHhhhHHHHHHHHhhH
Q 007043 210 ISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDD-LALALKEVALEASQA---KEKLTSTEAELEVKKAES 285 (620)
Q Consensus 210 ~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEd-LA~AL~EVS~EArea---Kekll~~Q~ElE~a~aqi 285 (620)
--+.... -.+-.|-+++..|..++..-.+..+.+.|-|++ ++.+..+.+.=-.+. ......+-.-+..++-++
T Consensus 958 a~ie~~~---~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl 1034 (1822)
T KOG4674|consen 958 AKIESLH---KKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDL 1034 (1822)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222110 122233333444444444444444555555555 333333333222222 222222222223333333
Q ss_pred HHHHHHHHhhHHHHH-----------------HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHH
Q 007043 286 EELKLKLKNIEDSHK-----------------LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEE 348 (620)
Q Consensus 286 e~Lk~~Lk~teekye-----------------~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE 348 (620)
.-....++.+..+|+ .-+..++-+.--|+++.+...+...+....|..++..+-.-+--+..-
T Consensus 1035 ~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~ 1114 (1822)
T KOG4674|consen 1035 KTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKR 1114 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 333334444444443 223344445566677777777777777777777777766655555555
Q ss_pred HhhHHHHHH
Q 007043 349 RDGAQQEHE 357 (620)
Q Consensus 349 ~~s~~~E~~ 357 (620)
+.++..+|.
T Consensus 1115 ~~~L~~qNs 1123 (1822)
T KOG4674|consen 1115 IESLEKQNS 1123 (1822)
T ss_pred HHHHHHHHH
Confidence 555555554
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.55 E-value=0.052 Score=54.73 Aligned_cols=218 Identities=18% Similarity=0.233 Sum_probs=124.8
Q ss_pred HHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 007043 85 EIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFE 164 (620)
Q Consensus 85 E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesE 164 (620)
...+-+.+.-+..+...|..+......+..-+.....|++.||-.|+.+...=..+..-|....+.++...-.+..-+..
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r 86 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR 86 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444455556666667777777777777788888999999999999887765555666666666666666666555666
Q ss_pred HHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHH
Q 007043 165 INSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEE 244 (620)
Q Consensus 165 IasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEE 244 (620)
....-+++..||..-..+ ..-+-......+....+|..+......|-..--.+-+.|..|.+++..+.+-|+.--..++
T Consensus 87 ~~~~eeri~~lE~~l~ea-~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 87 EQSDEERIEELEQQLKEA-KRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 666666666666540000 0000112222333333344444444444333334555666666666666666666555555
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Q 007043 245 NNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQL 303 (620)
Q Consensus 245 KsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mL 303 (620)
+.=.-.+.+-.-++.+....+++--++-.+.........+|++|...|..++.+|..+-
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444555555555555555555555555555555555555666666655555555443
No 22
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.28 E-value=0.62 Score=54.31 Aligned_cols=301 Identities=18% Similarity=0.222 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH-HHHhhHHHHhhh-----hhhhhhhhhhhhHHHH--H------
Q 007043 6 RTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQE-ANMRLSETMSTR-----KAADIYTMNETLSKEL--K------ 71 (620)
Q Consensus 6 ~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdE-an~kL~eal~a~-----k~ae~~~e~~~l~~EL--~------ 71 (620)
..+|-+|-|.+.++.++.. +|. -.+|+-.+++ +|+.|-++..++ +++..++.+.+|+.|. +
T Consensus 342 d~~q~eLdK~~~~i~~Ln~----~le-aReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEk 416 (961)
T KOG4673|consen 342 DDVQLELDKTKKEIKMLNN----ALE-AREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEK 416 (961)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHH
Confidence 4478899999999877643 221 3456656655 577777754443 3444444443333222 1
Q ss_pred -----HHH-----HhhHHhhHH-----HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 007043 72 -----VKE-----KNIESLKKE-----WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKES 136 (620)
Q Consensus 72 -----i~e-----~~i~~LK~~-----~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~es 136 (620)
++| .+|.+||.+ .=.-|+|++.+|.+|-.+=+.--+--..-...+-....|+. ++.-.
T Consensus 417 Kvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~k-------e~etl 489 (961)
T KOG4673|consen 417 KVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIK-------EAETL 489 (961)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------hhhHH
Confidence 111 357777774 23457888888888866543322211111111111112221 22222
Q ss_pred HHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh-hhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhh
Q 007043 137 EKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESR-DLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNE 215 (620)
Q Consensus 137 E~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~-~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nE 215 (620)
+.+.++-..-.-.++...+..|...+-=--.+++.|..+-.. .++.. +.+.++.-++.|.+++.... |-+++
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~--~~~~sr~~~~~le~~~~a~q-----at~d~ 562 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKD--YYSNSRALAAALEAQALAEQ-----ATNDE 562 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHH-----Hhhhh
Confidence 222333333333455555555655443334455555555443 22111 12233444444443333321 11111
Q ss_pred hhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhh
Q 007043 216 KESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNI 295 (620)
Q Consensus 216 k~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~t 295 (620)
-. +=+.--|+|. -+.+++.+.----++.||-.+|+-.- . ..+.-| ...+.+|++|.--|..+
T Consensus 563 a~------~Dlqk~nrlk--Qdear~~~~~lvqqv~dLR~~L~~~E--------q-~aarrE-d~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 563 AR------SDLQKENRLK--QDEARERESMLVQQVEDLRQTLSKKE--------Q-QAARRE-DMFRGEIEDLQRRLQAA 624 (961)
T ss_pred hh------hhHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 00 0000112222 22566666666667777776665211 0 111122 46788999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHH
Q 007043 296 EDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIK 343 (620)
Q Consensus 296 eekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK 343 (620)
+-+.+.+.-.+-.=-.-|-..++.|..-......+|+--|..+...+-
T Consensus 625 E~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~ 672 (961)
T KOG4673|consen 625 ERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLS 672 (961)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 988888776643222334444788887778888999999999887665
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=97.21 E-value=0.71 Score=53.64 Aligned_cols=13 Identities=23% Similarity=0.135 Sum_probs=4.7
Q ss_pred HhhhHHHHHHHHH
Q 007043 412 LHAKEEALNFICR 424 (620)
Q Consensus 412 L~dKEneLq~i~q 424 (620)
+...+..++.+..
T Consensus 682 ~~~l~~~i~~l~~ 694 (880)
T PRK03918 682 LEELEKRREEIKK 694 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.16 E-value=9.4e-05 Score=86.51 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEAN 44 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan 44 (620)
+|+++.-++++|-.-+.--..+++.|.-+-.||.+++.--+++.
T Consensus 44 lq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~ 87 (859)
T PF01576_consen 44 LQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAG 87 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47778888888888888778888888888888877765544443
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.14 E-value=0.39 Score=49.29 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=61.5
Q ss_pred hhHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhh
Q 007043 76 NIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTM 155 (620)
Q Consensus 76 ~i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk 155 (620)
.+..++..|+..+.++-..|+.+..+-+........+..-+.+++.|....-.. -..+-.-+...-+.++...
T Consensus 44 ~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~-------~~~le~el~~lrk~ld~~~ 116 (312)
T PF00038_consen 44 EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAE-------RKDLEEELESLRKDLDEET 116 (312)
T ss_dssp --HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhhhh
Confidence 355566679999999999998888888888887777777888887766654111 1111122333446677766
Q ss_pred hhhhhhhhhHHHHHHHHHhhh
Q 007043 156 IVFEESKFEINSLREKLKKLE 176 (620)
Q Consensus 156 ~lLeeaesEIasLkekv~~LE 176 (620)
...-+.+.+|.+|++.+..+-
T Consensus 117 ~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 117 LARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHH
Confidence 666666777777777666553
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.78 E-value=2.9 Score=53.46 Aligned_cols=267 Identities=18% Similarity=0.185 Sum_probs=125.3
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh--------hhhhc-----cc----CcccchhhHHHHHHH
Q 007043 138 KKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESR--------DLNAS-----QS----GLAGTNETVEFLNSE 200 (620)
Q Consensus 138 ~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~--------~~~~~-----~~----e~~~lq~~ve~Lkse 200 (620)
..+..||.++-..|+.+. .+....|..++.++.+||.. ..... .. .+..+..++.+++++
T Consensus 936 ~s~eqsl~~~ks~lde~~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne 1012 (1822)
T KOG4674|consen 936 SSLEQSLESVKSELDETR---LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNE 1012 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHH
Confidence 344455555555566555 22334455666666666632 00000 00 024445566666666
Q ss_pred HHHHHHHHHhhhhhhhhH---------------------HHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHH
Q 007043 201 LQLAKDKLAISEKNEKES---------------------LLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKE 259 (620)
Q Consensus 201 le~~~e~~~~Al~nEk~a---------------------ss~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~E 259 (620)
+.-+.....+|....... ...-+.+.+.+.+|..++-.|.++-.+-++-.+.+.++|.+
T Consensus 1013 ~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e 1092 (1822)
T KOG4674|consen 1013 LKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSE 1092 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhh
Confidence 655555444443322111 11233455666667777777777777777777777777766
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhh------------------------------------HHHHHHHH
Q 007043 260 VALEASQAKEKLTSTEAELEVKKAESEELKLKLKNI------------------------------------EDSHKLQL 303 (620)
Q Consensus 260 VS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~t------------------------------------eekye~mL 303 (620)
.-.--.+.+..|. .++.-+..+|.+|....+.- .+-...=+
T Consensus 1093 ~~~~w~E~~~~Le---qe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~ 1169 (1822)
T KOG4674|consen 1093 QERDWSEKEDALE---QEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKL 1169 (1822)
T ss_pred cccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhH
Confidence 5443333333221 12223333333333322222 22222233
Q ss_pred HHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhH---HHHHHhhH-------------HHHhhHHHHHHHHHHHHHHHH
Q 007043 304 DELKKEADLYRNTADRLTLEAEESLLAWNEKETRF---VDCIKRAE-------------EERDGAQQEHEAMLESLKEAE 367 (620)
Q Consensus 304 DEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~f---V~ciK~sE-------------EE~~s~~~E~~rL~esl~~aE 367 (620)
+-++.|...|+..|.-+...+......-...+..| +-.+...+ |-+..+|.++.++.+-+++-.
T Consensus 1170 ~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~ 1249 (1822)
T KOG4674|consen 1170 DTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELR 1249 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444555566665555555555555555555555 22222221 223444555555555555444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhH
Q 007043 368 NTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQD 410 (620)
Q Consensus 368 ~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd 410 (620)
.....++.+..-|+..|++--.+.--..-.+...+-|+.+||-
T Consensus 1250 ~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~ 1292 (1822)
T KOG4674|consen 1250 DKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQ 1292 (1822)
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555554444333333333344444555555553
No 27
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.67 E-value=2.4 Score=51.03 Aligned_cols=246 Identities=22% Similarity=0.290 Sum_probs=127.4
Q ss_pred hHHHHHHHHHH----HHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCccc
Q 007043 114 SLYSESKKKLQ----ELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAG 189 (620)
Q Consensus 114 ~l~~EwK~Kv~----~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~ 189 (620)
..+.|||.|+. .|+++|-.++.--+-+.+-=.--+.+|..+-...+=+-++-.--.++..+|.. +.-.
T Consensus 265 eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~--------eve~ 336 (1243)
T KOG0971|consen 265 EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQ--------EVEA 336 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHH
Confidence 47889988775 46666655554333333322222333333322222222211111122222211 1112
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 007043 190 TNETVEFLNSELQLAKDKLAISEKNEK-ESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAK 268 (620)
Q Consensus 190 lq~~ve~Lksele~~~e~~~~Al~nEk-~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaK 268 (620)
++..|++|.-+|+.++.+...-=.+.. .++-+|..|..+-.+|+.=| .-|+..++..++-.
T Consensus 337 lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal------------------VrLRDlsA~ek~d~ 398 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL------------------VRLRDLSASEKQDH 398 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH------------------HHHHhcchHHHHHH
Confidence 333445555555555544322211111 23337777777777765433 33566677766666
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHH-HHHHHHHHHHHHhHhhhhHHHHHHhhHH
Q 007043 269 EKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADR-LTLEAEESLLAWNEKETRFVDCIKRAEE 347 (620)
Q Consensus 269 ekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tver-l~~Ea~~s~~eW~~KE~~fV~ciK~sEE 347 (620)
.|+ +.|+|.-+.++.+|+ .+.+++..-+|.+-.=|.-|+..|+- |.+ +.--.-..+|=..+=+.||..||
T Consensus 399 qK~---~kelE~k~sE~~eL~----r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA--E~MV~qLtdknlnlEekVklLee 469 (1243)
T KOG0971|consen 399 QKL---QKELEKKNSELEELR----RQKERLSRELDQAESTIADLKEQVDAALGA--EEMVEQLTDKNLNLEEKVKLLEE 469 (1243)
T ss_pred HHH---HHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHhhccCHHHHHHHHHH
Confidence 664 557888888877654 45566666666666566666666553 222 33445556778888999999999
Q ss_pred HHhhHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007043 348 ERDGAQ---QEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEA 397 (620)
Q Consensus 348 E~~s~~---~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Ea 397 (620)
++..+. +=+..|+++-++.|...+ +|...+.-..+.+....+.++|.
T Consensus 470 tv~dlEalee~~EQL~Esn~ele~DLr---eEld~~~g~~kel~~r~~aaqet 519 (1243)
T KOG0971|consen 470 TVGDLEALEEMNEQLQESNRELELDLR---EELDMAKGARKELQKRVEAAQET 519 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHH
Confidence 988653 223467777776665433 44444333333334444444433
No 28
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.54 E-value=1.6 Score=48.87 Aligned_cols=274 Identities=22% Similarity=0.227 Sum_probs=155.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh-h-hhhcccCcccc-hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007043 145 AAQTKQLEQTMIVFEESKFEINSLREKLKKLESR-D-LNASQSGLAGT-NETVEFLNSELQLAKDKLAISEKNEKESLLK 221 (620)
Q Consensus 145 ~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~-~-~~~~~~e~~~l-q~~ve~Lksele~~~e~~~~Al~nEk~ass~ 221 (620)
.+...|+-..++-|.+...|+..|+..+..+... . ..........+ ...+++|+.+|..+......-..|-..+...
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~ 184 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVE 184 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 3344477777899999999999999998887322 0 00000001122 2345889999999887776666665555554
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHh---HHHHHHHHHHhhhHHHHHHHH-------hhHHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVA---LEASQAKEKLTSTEAELEVKK-------AESEELKLK 291 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS---~EAreaKekll~~Q~ElE~a~-------aqie~Lk~~ 291 (620)
|-.=+-.++....+|..... |+..+..-|.++. .-.+-++.-+-....++..|+ .--+.|...
T Consensus 185 fl~rtl~~e~~~~~L~~~~~-------A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~ 257 (511)
T PF09787_consen 185 FLKRTLKKEIERQELEERPK-------ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIES 257 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44334444444444443222 4444444433221 122222333333333444444 233444455
Q ss_pred HHh--hHHHHH-----HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHH
Q 007043 292 LKN--IEDSHK-----LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLK 364 (620)
Q Consensus 292 Lk~--teekye-----~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~ 364 (620)
||. ..+-+. +=|++.++|.+.++.-+..|+........+|+..|..+..-...++.....+..-+..++.
T Consensus 258 LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~--- 334 (511)
T PF09787_consen 258 LKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELT--- 334 (511)
T ss_pred HHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc---
Confidence 555 111111 1278999999999999999999999999999999999988887777665555433333222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 007043 365 EAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELK 444 (620)
Q Consensus 365 ~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs 444 (620)
+|.+.. .+...|.....+.+..+ +-+.-.+.+|++++|.++......- + ...-.+|-
T Consensus 335 -~e~e~~-------l~~~el~~~~ee~~~~~----------s~~~~k~~~ke~E~q~lr~~l~~~~-~----~s~~~elE 391 (511)
T PF09787_consen 335 -TEAELR-------LYYQELYHYREELSRQK----------SPLQLKLKEKESEIQKLRNQLSARA-S----SSSWNELE 391 (511)
T ss_pred -hHHHHH-------HHHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHHHHHHHHHHHHh-c----cCCcHhHH
Confidence 233333 33333333333333222 2455667788999999988765522 1 11223555
Q ss_pred HHHHhhh
Q 007043 445 KLLSESS 451 (620)
Q Consensus 445 ~lL~ea~ 451 (620)
+.|...|
T Consensus 392 ~rl~~lt 398 (511)
T PF09787_consen 392 SRLTQLT 398 (511)
T ss_pred HHHhhcc
Confidence 5555544
No 29
>PRK11637 AmiB activator; Provisional
Probab=96.49 E-value=1.7 Score=47.21 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=54.8
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
+..+..++..+..++...........+.+.+|-..|.......+.+...+...+.++...+.+|..++..+....+.|..
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666665555555666666777777777777777777777777777777777777777777666666665
Q ss_pred HHH
Q 007043 302 QLD 304 (620)
Q Consensus 302 mLD 304 (620)
++-
T Consensus 129 rlr 131 (428)
T PRK11637 129 QLD 131 (428)
T ss_pred HHH
Confidence 554
No 30
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.44 E-value=0.00075 Score=79.16 Aligned_cols=329 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhh------------hhhhhHH
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYT------------MNETLSK 68 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~------------e~~~l~~ 68 (620)
++.++..+++.|--++.....+++-|.|+-+|+..+.---+.++......=..|+..+-.. +.+++.+
T Consensus 326 L~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~ 405 (859)
T PF01576_consen 326 LERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQR 405 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888888888888888888888777777655433333333322100 1123336
Q ss_pred HHHHHHHhhHHhhHH---HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHH
Q 007043 69 ELKVKEKNIESLKKE---WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFA 145 (620)
Q Consensus 69 EL~i~e~~i~~LK~~---~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~ 145 (620)
|.+....+|-.|+.. +...+..++...-.|..+|.+....-+.+...+.+..+....||.++++...
T Consensus 406 e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~---------- 475 (859)
T PF01576_consen 406 EARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQE---------- 475 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHH----------
Confidence 666777788888884 4556666777778888888888888888877788887777788877654433
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh-h--hhhcccC-----------cccchhhHHHHHHHHHHHHHHHHhh
Q 007043 146 AQTKQLEQTMIVFEESKFEINSLREKLKKLESR-D--LNASQSG-----------LAGTNETVEFLNSELQLAKDKLAIS 211 (620)
Q Consensus 146 sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~-~--~~~~~~e-----------~~~lq~~ve~Lksele~~~e~~~~A 211 (620)
+|+.....| -.+..++..|+.+ . +...+.. -..++..|++|...|+.-...++.|
T Consensus 476 ----~leE~E~~l-------~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~ 544 (859)
T PF01576_consen 476 ----QLEEAEDAL-------EAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEA 544 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 233322222 2333333333332 0 0000111 1345667777777776543333222
Q ss_pred hhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 007043 212 EKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLK 291 (620)
Q Consensus 212 l~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~ 291 (620)
...+.+|.++|......-+-.-++.+++.-.|+. .+..+-..|..++.+....+++...
T Consensus 545 --------------~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk-------~q~qlkdlq~~lee~~~~~~~~~~~ 603 (859)
T PF01576_consen 545 --------------LREKKKLESDLNELEIQLDHANRANEEAQKQLKK-------LQAQLKDLQRELEEAQRAREELREQ 603 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2234444444433333333333444444444333 3333334445555555555555555
Q ss_pred HHhhHHHHHHHHHH---hhhHH---HHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHH
Q 007043 292 LKNIEDSHKLQLDE---LKKEA---DLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKE 365 (620)
Q Consensus 292 Lk~teekye~mLDE---a~~E~---~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~ 365 (620)
+..++.++..|-.+ ++-.. +.-+..++.-..++..-...-...=..+++-.++.|.++..+..++.-..+.+..
T Consensus 604 ~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~ 683 (859)
T PF01576_consen 604 LAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA 683 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444433322 11111 1111122222222222222222223345556666666666666666655555554
Q ss_pred HHHHHH
Q 007043 366 AENTTR 371 (620)
Q Consensus 366 aE~e~~ 371 (620)
+....+
T Consensus 684 ~~ek~k 689 (859)
T PF01576_consen 684 AEEKAK 689 (859)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444333
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.41 E-value=1.4 Score=45.32 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=44.0
Q ss_pred hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhh
Q 007043 336 TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAK 415 (620)
Q Consensus 336 ~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dK 415 (620)
..+-..+......+.+++.|+..+-..+.....+....+..+..|...|....... ..+...+...+..+
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~----------~~~~~~~~~~i~~l 267 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL----------DEEREEYQAEIAEL 267 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH----------HHHHHHHHHhhhcc
Confidence 33344444555666666666666666665555555555555555555543222211 12233566666666
Q ss_pred HHHHHHHHHhhh
Q 007043 416 EEALNFICRENE 427 (620)
Q Consensus 416 EneLq~i~qEne 427 (620)
|.+|..++.+..
T Consensus 268 e~el~~l~~~~~ 279 (312)
T PF00038_consen 268 EEELAELREEMA 279 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 666666665543
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.39 E-value=2.5 Score=49.59 Aligned_cols=204 Identities=23% Similarity=0.272 Sum_probs=103.4
Q ss_pred cchhhHHHHHHHHHHHHHH---HHh----hhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHH-
Q 007043 189 GTNETVEFLNSELQLAKDK---LAI----SEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEV- 260 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~e~---~~~----Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EV- 260 (620)
.|..+|+.||++|+..+.. ... -.++|...-+.++.+..+...|++.|-.......+-|-.|..|--=|.+-
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888887765432 111 23445556666666666666666666655555555555555554444331
Q ss_pred ----hHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhh
Q 007043 261 ----ALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKET 336 (620)
Q Consensus 261 ----S~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~ 336 (620)
+.|+.=..++=..+++|--.|++-+ .+.-.++ | -.+-++.....|+.|.+....+...||-
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~-------~~~~~r~-----e---~~e~~r~r~~~lE~E~~~lr~elk~kee 566 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALA-------QAQATRQ-----E---CAESCRQRRRQLESELKKLRRELKQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccc-------cchhccc-----h---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122212222222222211111100 0000001 0 1123566667777777777777777764
Q ss_pred hHHHHHHhhHHHHhhHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHhhh
Q 007043 337 RFVDCIKRAEEERDGAQQ-------EHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEAN---VAKEASGIARAENA 406 (620)
Q Consensus 337 ~fV~ciK~sEEE~~s~~~-------E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean---~a~Eale~AkaEn~ 406 (620)
. +...|.++..++. +..-|+..| .+++|.++.|-..|- .|.. .+=-|||.||.+..
T Consensus 567 ~----~~~~e~~~~~lr~~~~e~~~~~e~L~~aL-------~amqdk~~~LE~sLs---aEtriKldLfsaLg~akrq~e 632 (697)
T PF09726_consen 567 Q----IRELESELQELRKYEKESEKDTEVLMSAL-------SAMQDKNQHLENSLS---AETRIKLDLFSALGDAKRQLE 632 (697)
T ss_pred H----HHHHHHHHHHHHHHHhhhhhhHHHHHHHH-------HHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344444433332 233444443 577777778777773 1111 13457788888877
Q ss_pred hhhHhHhhhHHHHHH
Q 007043 407 RLQDALHAKEEALNF 421 (620)
Q Consensus 407 ~LKd~L~dKEneLq~ 421 (620)
-+...+..||.++..
T Consensus 633 i~~~~~~~~d~ei~~ 647 (697)
T PF09726_consen 633 IAQGQLRKKDKEIEE 647 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666655433
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.03 E-value=6.1 Score=48.93 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhh-----hhhHHHHH------------HHH----
Q 007043 16 KDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMN-----ETLSKELK------------VKE---- 74 (620)
Q Consensus 16 keql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~e~-----~~l~~EL~------------i~e---- 74 (620)
-.+|..+-.|-++++-=+.+++.-|.||-.+-+.|+..-+..-...+. +.|-+.++ |.+
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEE 1500 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 456777778888888888999999999998888887544333222211 00112221 222
Q ss_pred ----------HhhHHhhHHH---HHHHHhhhhhHHHHhhhHHHhhhhHHHHh---hHHHHHHHHHHHHHHHHHHhhhhHH
Q 007043 75 ----------KNIESLKKEW---EIKLVEKDASLDELKGTLSNAKSSEAHAM---SLYSESKKKLQELELEVEKRKESEK 138 (620)
Q Consensus 75 ----------~~i~~LK~~~---E~kl~E~e~~ie~L~~el~~Ak~aes~a~---~l~~EwK~Kv~~LE~ele~a~esE~ 138 (620)
..|..|-+.+ =.+|...|.+|-.-+.|++.|.+-.++|. ..+..-|..++..-.-|++|.+
T Consensus 1501 vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~--- 1577 (1758)
T KOG0994|consen 1501 VLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADV--- 1577 (1758)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---
Confidence 2366666533 34556678888888999998888887774 3333344445554444555544
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHH
Q 007043 139 KMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSE 200 (620)
Q Consensus 139 ~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lkse 200 (620)
+..-++.-+.++...++.++--|+..++....-|.....+++ -+..|.+.++.||.+
T Consensus 1578 ----Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q-~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1578 ----AQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQ-QLGELETRMEELKHK 1634 (1758)
T ss_pred ----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666555543222221 134456666666544
No 34
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.92 E-value=1.1 Score=41.76 Aligned_cols=126 Identities=22% Similarity=0.327 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHh
Q 007043 227 EEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 227 EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa 306 (620)
.++..|..++.......+.....+..+-.-|..++.-+++|+.+|-.==.-+-.+-..+..||..+ .+.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~-----------~~~ 71 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREEL-----------QEL 71 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHH
Confidence 356667777777777777777777777777888888899999888543222222223333333333 445
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHH
Q 007043 307 KKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESL 363 (620)
Q Consensus 307 ~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl 363 (620)
+.+|.-|+..++........+...|...+..|-..|..++.-+..+...|.=|.+-|
T Consensus 72 ~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 72 QQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777788888888999999999999999999999999988888887776544
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=95.86 E-value=5.1 Score=46.78 Aligned_cols=10 Identities=10% Similarity=0.587 Sum_probs=4.9
Q ss_pred HhhhHHhHHH
Q 007043 24 KERDRALDEL 33 (620)
Q Consensus 24 ~Ek~r~~dEL 33 (620)
.+|.++|++|
T Consensus 145 ~~r~~~~~~~ 154 (880)
T PRK03918 145 ESREKVVRQI 154 (880)
T ss_pred HHHHHHHHHH
Confidence 3455555554
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.59 E-value=8.4 Score=47.26 Aligned_cols=260 Identities=23% Similarity=0.264 Sum_probs=136.2
Q ss_pred HHHHHHHhhhhhHHHHhhhHHH--hhhhHHHHhhHHHHHH--HHHHHH--HHHHHHhhhhHHhhhhhHHHHHHHHHhhhh
Q 007043 83 EWEIKLVEKDASLDELKGTLSN--AKSSEAHAMSLYSESK--KKLQEL--ELEVEKRKESEKKMFDSFAAQTKQLEQTMI 156 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~--Ak~aes~a~~l~~EwK--~Kv~~L--E~ele~a~esE~~~~eSL~sqtKqLE~tk~ 156 (620)
.+=.|-.+++.+|+-.+..|.+ --++...|++.+.... .+-..+ =.+|+.-+ +|+.+-+.-|+.++.
T Consensus 156 vVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~-------~~~~~~~~~~~~~~~ 228 (1074)
T KOG0250|consen 156 VVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQIT-------ESYSEIMESLDHAKE 228 (1074)
T ss_pred cccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4566778889999999888886 4678888888887663 222221 12333334 455555555555555
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHH
Q 007043 157 VFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNEL 236 (620)
Q Consensus 157 lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL 236 (620)
+++..+-+|..|+.++...+.-- .--..++.+...++.++...+=|.-+
T Consensus 229 ~i~~~~e~i~~l~k~i~e~~e~~---------~~~~~~e~~~~~l~~Lk~k~~W~~V~---------------------- 277 (1074)
T KOG0250|consen 229 LIDLKEEEIKNLKKKIKEEEEKL---------DNLEQLEDLKENLEQLKAKMAWAWVN---------------------- 277 (1074)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 55556666666666554443200 00001122222222222222211111
Q ss_pred hHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhh---hHHHHH
Q 007043 237 KLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELK---KEADLY 313 (620)
Q Consensus 237 ~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~---~E~~~l 313 (620)
+-.-.|...-.+-+-.+++...+|..++.....+++++..|...+.+..-..||++ -|+.++
T Consensus 278 ---------------~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~ 342 (1074)
T KOG0250|consen 278 ---------------EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEA 342 (1074)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 11122222333333344444445555555555555555555555555555555443 477778
Q ss_pred HhhHHHHHHHHHHHHHHHhHhhhh---HHHHHHhhHHHHhhHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007043 314 RNTADRLTLEAEESLLAWNEKETR---FVDCIKRAEEERDGAQQEH-EAMLESLKEAENTTRAAKEETLKLRDILKQAIN 389 (620)
Q Consensus 314 k~tverl~~Ea~~s~~eW~~KE~~---fV~ciK~sEEE~~s~~~E~-~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~ 389 (620)
+.+|..++.++.......+..+-. .=.|+...+..|..++.+. ..+..-+-..++...-+..+..+|+..+.+...
T Consensus 343 r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 343 RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777666665555533 3456666666666666665 333344444555555555555555555544444
Q ss_pred HHHHHH
Q 007043 390 EANVAK 395 (620)
Q Consensus 390 Ean~a~ 395 (620)
|.|..+
T Consensus 423 e~~~~~ 428 (1074)
T KOG0250|consen 423 ELNEVK 428 (1074)
T ss_pred HHHHHH
Confidence 444433
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.36 E-value=6.7 Score=44.64 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=82.4
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhh
Q 007043 338 FVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRA---AKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHA 414 (620)
Q Consensus 338 fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~---~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~d 414 (620)
+-+.+....+.+..+..|+.+|-.+..-++++... ...+...|...++.....++....++.....+...|.+.+..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 55667777888888888899888883333333222 223333444455555555555555567777777788888888
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhh
Q 007043 415 KEEALNFICRENEDLKMNEAANIESMKELKKLLSESS 451 (620)
Q Consensus 415 KEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~ 451 (620)
=++....+......||..|..|..++..+...|....
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999988664
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.07 E-value=11 Score=45.68 Aligned_cols=188 Identities=19% Similarity=0.201 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHH
Q 007043 192 ETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKL 271 (620)
Q Consensus 192 ~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekl 271 (620)
.+++.++..++.+.+-+++-+. ++-.|..++.+-+.|++.|.+.-++-|.-|.|+|-+.-=.+-+--=|-||-
T Consensus 255 ~ElekmkiqleqlqEfkSkim~-------qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERa 327 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEFKSKIME-------QQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERA 327 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4677888888888776544322 345677788888999999999999999999999998754443333344444
Q ss_pred hhhHHHHHHHHhh--------------------------------HHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHH
Q 007043 272 TSTEAELEVKKAE--------------------------------SEELKLKLKNIEDSHKLQLDELKKEADLYRNTADR 319 (620)
Q Consensus 272 l~~Q~ElE~a~aq--------------------------------ie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tver 319 (620)
-..|-|++..+-. ++.-+.-||.|=-+++.++-..++++..+.+-+|+
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~ 407 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEK 407 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444444433333 33444567777778888888888888888888888
Q ss_pred HHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007043 320 LTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVA 394 (620)
Q Consensus 320 l~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a 394 (620)
...|..+.. +.||. |-.-+-.+|--|..+++.+|--+ .||.|+.-+-+.|-.|-|..+....+++.+
T Consensus 408 k~sE~~eL~---r~kE~-Lsr~~d~aEs~iadlkEQVDAAl----GAE~MV~qLtdknlnlEekVklLeetv~dl 474 (1243)
T KOG0971|consen 408 KNSELEELR---RQKER-LSRELDQAESTIADLKEQVDAAL----GAEEMVEQLTDKNLNLEEKVKLLEETVGDL 474 (1243)
T ss_pred HhhHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHhhccCHHHHHHHHHHHHHHH
Confidence 888876653 22332 33445556666777777776544 468899989999999999999888888863
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.90 E-value=14 Score=45.83 Aligned_cols=96 Identities=23% Similarity=0.245 Sum_probs=71.9
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK 300 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye 300 (620)
....+.+++..+...++.+...-..+..++..+-..+.+.-..-.++...|-..+.++..++.++..|...|......+-
T Consensus 463 ~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~ 542 (1201)
T PF12128_consen 463 YTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLL 542 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH
Confidence 34556778888888888888888888888888888888888888888888888888888888889888887765555555
Q ss_pred HHHHHhhhHHHHHHhhHHH
Q 007043 301 LQLDELKKEADLYRNTADR 319 (620)
Q Consensus 301 ~mLDEa~~E~~~lk~tver 319 (620)
.-|. .+..-|..|+++
T Consensus 543 ~fL~---~~~p~We~tIGK 558 (1201)
T PF12128_consen 543 EFLR---KNKPGWEQTIGK 558 (1201)
T ss_pred HHHH---hCCCcHHHHhHh
Confidence 4442 235555555433
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.83 E-value=1.9 Score=41.13 Aligned_cols=123 Identities=24% Similarity=0.295 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHh
Q 007043 34 HEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAM 113 (620)
Q Consensus 34 ~eakk~AdEan~kL~eal~a~k~ae~~~e~~~l~~EL~i~e~~i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~ 113 (620)
..++--+|.|..+...+ ......+-+++.-++.+|.+|.. |+.-++.-|+.+...|..++..-..+.
T Consensus 3 ~~lk~E~d~a~~r~e~~---------e~~~K~le~~~~~~E~EI~sL~~----K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 3 QALKLEADNAQDRAEEL---------EAKVKQLEQENEQKEQEITSLQK----KNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566667777666555 11122223444556667777655 444455556666666666655544444
Q ss_pred hH---HHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhh
Q 007043 114 SL---YSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLE 176 (620)
Q Consensus 114 ~l---~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE 176 (620)
.. ++-...||+.||-+|+.+.. .|...|..|.++.....+.+-.+.+|......+|
T Consensus 70 ~~~~~~E~l~rriq~LEeele~ae~-------~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 70 KRKSNAEQLNRRIQLLEEELEEAEK-------KLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 33 34578999999999998875 5667777777766666666666555555444443
No 41
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.57 E-value=4.6 Score=41.41 Aligned_cols=167 Identities=22% Similarity=0.258 Sum_probs=122.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhh--hh----hh----hhhHHHHH
Q 007043 2 QQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADI--YT----MN----ETLSKELK 71 (620)
Q Consensus 2 q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~--~~----e~----~~l~~EL~ 71 (620)
++.+.-.+.+|.+++..++.+-...-+.-.+|+++...+..--.+-.-||.++.-.-- .. .+ ..+.+.+.
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~ 109 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQ 109 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999888888888888877752220 00 01 12446677
Q ss_pred HHHHhhHHhhH---HHHHHHHhhhhhHHHHhhhHHHhhhhHH-----------HHhhHHHHHHHHHHHHHHHHHHhhhhH
Q 007043 72 VKEKNIESLKK---EWEIKLVEKDASLDELKGTLSNAKSSEA-----------HAMSLYSESKKKLQELELEVEKRKESE 137 (620)
Q Consensus 72 i~e~~i~~LK~---~~E~kl~E~e~~ie~L~~el~~Ak~aes-----------~a~~l~~EwK~Kv~~LE~ele~a~esE 137 (620)
.....+..|+. .++.|+.++....+.|+.....++-.+. .|...|+.-..||...|.+.+.+.++.
T Consensus 110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~ 189 (225)
T COG1842 110 QAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELA 189 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 77777888888 6899999999998888888777765443 556778888999999999999888876
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 007043 138 KKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKL 172 (620)
Q Consensus 138 ~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv 172 (620)
. .+=....++|.+..+ =-...++++.|+.+.
T Consensus 190 ~---~~~~dl~~e~a~~~~-~~~v~~~La~lka~~ 220 (225)
T COG1842 190 E---GSGDDLDKEFAQAGA-QSAVDSRLAALKARM 220 (225)
T ss_pred c---cCcccHHHHHHHhcc-cccHHHHHHHHHHhh
Confidence 3 333444556655544 222455666666654
No 42
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.55 E-value=0.34 Score=56.10 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKL 290 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~ 290 (620)
++.+.-++..|...+.....+......-++++-..+.......+...-+......|.+..+++++..-.
T Consensus 359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444444445555555555554444555555555555566666665555443
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.54 E-value=9.4 Score=42.23 Aligned_cols=204 Identities=15% Similarity=0.168 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhH---HHHH
Q 007043 224 SLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIE---DSHK 300 (620)
Q Consensus 224 ~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~te---ekye 300 (620)
.+..++..|..++......-+.-.++.+.+...+.. .....+..+.....+......++..|+..|.+.. +.|.
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~---~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~ 254 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE---NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 333344444444444444444444444444443321 2223333344444444444455555555444443 2366
Q ss_pred HHHHHhhhHHHHHHhhHHHHHHHHHHHHH--HHhHhhhhH---HHHHHhhHHHHhhHHHHHHHHHHHHHHHHH---HHHH
Q 007043 301 LQLDELKKEADLYRNTADRLTLEAEESLL--AWNEKETRF---VDCIKRAEEERDGAQQEHEAMLESLKEAEN---TTRA 372 (620)
Q Consensus 301 ~mLDEa~~E~~~lk~tverl~~Ea~~s~~--eW~~KE~~f---V~ciK~sEEE~~s~~~E~~rL~esl~~aE~---e~~~ 372 (620)
..|..++-++.-++..+..+.....-... .|--=...| .+.+-...+.+..++.+...+-..+...+. +...
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~ 334 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNE 334 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777666554421 110001111 344445555666666666666666553322 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 373 AKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 373 ~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
.......++..+...-..+..+.......+.+-..|.....+-+.+|..+..+.+.++
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 2223333333332222222222222233344444555555555555555555555554
No 44
>PRK11637 AmiB activator; Provisional
Probab=94.49 E-value=9 Score=41.82 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=14.9
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHH
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAH 111 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~ 111 (620)
...++.++...|.++..++...+.....
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~ 72 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRAS 72 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444433
No 45
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.94 E-value=5.8 Score=46.91 Aligned_cols=136 Identities=28% Similarity=0.320 Sum_probs=87.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHh
Q 007043 253 LALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWN 332 (620)
Q Consensus 253 LA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~ 332 (620)
|..-+.++-+|.++++.-+...++|.++-.....+| +.+..|+-.-..+|+.|.+++ .
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~------------------~~~~~~~e~~~~~lr~e~ke~----K 89 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQEL------------------RKECEDLELERKRLREEIKEY----K 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH----H
Confidence 455556666666666655555554444433333333 334455555577888887765 4
Q ss_pred HhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 007043 333 EKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRD---ILKQAINEANVAKEASGIARAENARLQ 409 (620)
Q Consensus 333 ~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd---~LKqa~~Ean~a~Eale~AkaEn~~LK 409 (620)
.+|..++.-.--.|||+++++..++-|-.+.-+-| .++-|+.+|.+ .|..++.|+..+++.++ .+|-
T Consensus 90 ~rE~rll~dyselEeENislQKqvs~Lk~sQvefE----~~Khei~rl~Ee~~~l~~qlee~~rLk~iae------~qle 159 (717)
T PF09730_consen 90 FREARLLQDYSELEEENISLQKQVSVLKQSQVEFE----GLKHEIKRLEEEIELLNSQLEEAARLKEIAE------KQLE 159 (717)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 68999999999999999999988877766654444 56666666654 34677788887774444 2444
Q ss_pred HhHhhhHHHHHHHHHhhh
Q 007043 410 DALHAKEEALNFICRENE 427 (620)
Q Consensus 410 d~L~dKEneLq~i~qEne 427 (620)
|+ |.+|..|-|
T Consensus 160 EA-------Lesl~~ERe 170 (717)
T PF09730_consen 160 EA-------LESLKSERE 170 (717)
T ss_pred HH-------HHHHHHHHH
Confidence 44 666666543
No 46
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.66 E-value=19 Score=42.61 Aligned_cols=305 Identities=22% Similarity=0.286 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH-------HHHhhHHHHhhhhhhhhhhh--hhhhHHHHHH----
Q 007043 6 RTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQE-------ANMRLSETMSTRKAADIYTM--NETLSKELKV---- 72 (620)
Q Consensus 6 ~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdE-------an~kL~eal~a~k~ae~~~e--~~~l~~EL~i---- 72 (620)
..++.+|-.|..-+...-++++--+.|++.++-.-.- +--.|++.|...-.-....+ ...+.-||+.
T Consensus 313 ~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~e 392 (786)
T PF05483_consen 313 KALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSE 392 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Confidence 4566777777777888888888888888877643211 11223333322111111111 1112244432
Q ss_pred ----------HHHhhHHhhHHHHH--HHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhh
Q 007043 73 ----------KEKNIESLKKEWEI--KLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKM 140 (620)
Q Consensus 73 ----------~e~~i~~LK~~~E~--kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~ 140 (620)
++.++.-|+..+.. ++..-... +..-.+..+.++-.-..++.---.+|+.||.+|.....++...
T Consensus 393 leEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~---~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~y 469 (786)
T PF05483_consen 393 LEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQ---FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHY 469 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHH
Confidence 22234444442221 12222222 2233344566777778888888899999999999999888766
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007043 141 FDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLL 220 (620)
Q Consensus 141 ~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass 220 (620)
+- |++..+.-|+.-++-.+-|-.+...|..+ ...++.+..++-+++....+...-.-..+--..-
T Consensus 470 sk-------QVeeLKtELE~EkLKN~ELt~~~nkLslE--------kk~laQE~~~~~~elKk~qedi~~~k~qee~~~k 534 (786)
T PF05483_consen 470 SK-------QVEELKTELEQEKLKNTELTVNCNKLSLE--------KKQLAQETSDMALELKKQQEDINNSKKQEEKMLK 534 (786)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 54 44444444444444444444444333322 0112222223333333222221111111223444
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhh----------------------------hHHHHHHHHHH-----------Hh
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQK----------------------------ALDDLALALKE-----------VA 261 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKK----------------------------AMEdLA~AL~E-----------VS 261 (620)
+|+.|.+....|+++|++.+.+-.+-.- ..+.-...|+- .-
T Consensus 535 qie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLq 614 (786)
T PF05483_consen 535 QIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQ 614 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7888888888888888876654322111 11111112221 11
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH
Q 007043 262 LEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESL 328 (620)
Q Consensus 262 ~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~ 328 (620)
-+-.-.|-+...-=.-+-.+...|..|...+.+++-+++.|.|--.++|+-=+-..+.|..|++...
T Consensus 615 qeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k 681 (786)
T PF05483_consen 615 QENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAK 681 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1111112222222222335677888999999999999999999888888876666777776666554
No 47
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=19 Score=41.95 Aligned_cols=196 Identities=21% Similarity=0.221 Sum_probs=104.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHH--
Q 007043 189 GTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQ-- 266 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAre-- 266 (620)
.++.+|+.|.-+|..+..++.||-+-+=..--.-..|-.....|..++++++.+-++-+-|.-.--+ -|-+++.--.
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s-~hkk~~~~g~e~ 90 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRS-QHKKVARDGEER 90 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccchhh
Confidence 4677788888888888887777765442111122333334444555666666666665555432221 1222222211
Q ss_pred ---------HHHHH-hhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHh---hHHHHHHHHHHHHHHHhH
Q 007043 267 ---------AKEKL-TSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRN---TADRLTLEAEESLLAWNE 333 (620)
Q Consensus 267 ---------aKekl-l~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~---tverl~~Ea~~s~~eW~~ 333 (620)
+|+.| +.+=.+|+ ++.-.|+..|-+..+..+.|.-..-..++.=.. ---||+.|.+++ .-
T Consensus 91 EesLLqESaakE~~yl~kI~ele---neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~----Kf 163 (772)
T KOG0999|consen 91 EESLLQESAAKEEYYLQKILELE---NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY----KF 163 (772)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH----HH
Confidence 12211 11111111 122223333333333333333322222211111 124666666655 56
Q ss_pred hhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHH
Q 007043 334 KETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLR---DILKQAINEANVAKE 396 (620)
Q Consensus 334 KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLr---d~LKqa~~Ean~a~E 396 (620)
+|..++.----.|||+++++..++-|-.+. -+-..++-++-+|- ++|++++.|+..+++
T Consensus 164 RE~RllseYSELEEENIsLQKqVs~LR~sQ----VEyEglkheikRleEe~elln~q~ee~~~Lk~ 225 (772)
T KOG0999|consen 164 REARLLSEYSELEEENISLQKQVSNLRQSQ----VEYEGLKHEIKRLEEETELLNSQLEEAIRLKE 225 (772)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987766655544 34446666666665 467888888887774
No 48
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.36 E-value=8.5 Score=45.90 Aligned_cols=170 Identities=21% Similarity=0.206 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhHhHHHHHhhh---hhHHHHHHHHHHHhHHHHHHHHHHhhh-HH--HHHHHHhhHH----HHH-HHHHh
Q 007043 226 LEEVRFLKNELKLVTGAEENNQ---KALDDLALALKEVALEASQAKEKLTST-EA--ELEVKKAESE----ELK-LKLKN 294 (620)
Q Consensus 226 ~EEk~~L~~EL~~a~~eEEKsK---KAMEdLA~AL~EVS~EAreaKekll~~-Q~--ElE~a~aqie----~Lk-~~Lk~ 294 (620)
+-|+.+|..|++.+.---=-+. .-==..|+||+.+-.|--+.+-+|-.. |- |-|.+....+ .|- .+|++
T Consensus 355 DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqS 434 (861)
T PF15254_consen 355 DSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQS 434 (861)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHH
Confidence 5588888888888764322221 112357899999999998888877543 22 2233332221 111 35666
Q ss_pred hHHHHHHHHHHhhhHHHHHH-------hhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHH
Q 007043 295 IEDSHKLQLDELKKEADLYR-------NTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAE 367 (620)
Q Consensus 295 teekye~mLDEa~~E~~~lk-------~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE 367 (620)
.+-.++.-|.|..+..+.|. ++++..+-|-+........|+..|+..=+.++-|+..++.|++..+.-++...
T Consensus 435 lN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q 514 (861)
T PF15254_consen 435 LNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQ 514 (861)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777888888888888777 45666667777777888888888888888888888888888877777766655
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007043 368 NTTRAAKEETLKLRDILKQAINEANVAK 395 (620)
Q Consensus 368 ~e~~~~~eE~~kLrd~LKqa~~Ean~a~ 395 (620)
-...++.-||.-|.=.|.|-.+|++.++
T Consensus 515 ~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 515 FKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred hhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 5555666666666666666666655443
No 49
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.07 E-value=24 Score=41.99 Aligned_cols=112 Identities=23% Similarity=0.313 Sum_probs=64.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH---HHHHHhhHHHHhhhhhhh-----hhhhh--hhhHHHHH
Q 007043 2 QQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMA---QEANMRLSETMSTRKAAD-----IYTMN--ETLSKELK 71 (620)
Q Consensus 2 q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~A---dEan~kL~eal~a~k~ae-----~~~e~--~~l~~EL~ 71 (620)
+.++..+|.+||.++-.+.-.-.|.+|+.....++++.. +---..|++-|.--|..+ .|++. +.++
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis---- 108 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS---- 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----
Confidence 456778889999999999888888888765555554433 222334444444333333 22221 0111
Q ss_pred HHHHhhHHhhH---HHH---HHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHH
Q 007043 72 VKEKNIESLKK---EWE---IKLVEKDASLDELKGTLSNAKSSEAHAMSLYSE 118 (620)
Q Consensus 72 i~e~~i~~LK~---~~E---~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~E 118 (620)
-.+.|.+||+ +|| -.+.-++.-++-|+..|+.|-+-.--|...++|
T Consensus 109 -lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleE 160 (717)
T PF09730_consen 109 -LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEE 160 (717)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1145777777 232 233445666788888888776665555554444
No 50
>PRK09039 hypothetical protein; Validated
Probab=92.62 E-value=17 Score=39.24 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHH
Q 007043 189 GTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAE 243 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eE 243 (620)
.++..+..|..+|...+...+.+.+.=..-..+|..|..++..|..+|..+....
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655444444455555555444444444444433
No 51
>PRK09039 hypothetical protein; Validated
Probab=92.53 E-value=15 Score=39.59 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHh
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEEN 245 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEK 245 (620)
...|...+..|...|..+......
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~ 99 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSR 99 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666655544443
No 52
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.10 E-value=29 Score=40.58 Aligned_cols=276 Identities=21% Similarity=0.218 Sum_probs=126.4
Q ss_pred HhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHH
Q 007043 89 VEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSL 168 (620)
Q Consensus 89 ~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasL 168 (620)
+|++.+.++|+.+.+ -|+.|+..|-.++..-+. +.+....-.++-+..|.-|
T Consensus 11 ~Erd~ya~~lk~e~a--------------~~qqr~~qmseev~~L~e--------------Ek~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 11 AERDQYAQQLKEESA--------------QWQQRMQQMSEEVRTLKE--------------EKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 455666666665532 388888766665554333 3333333333344445555
Q ss_pred HHHHHhhhhhhhhhcccCc-ccchhhHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhh
Q 007043 169 REKLKKLESRDLNASQSGL-AGTNETVEFLNSELQLAKDKL-AISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENN 246 (620)
Q Consensus 169 kekv~~LE~~~~~~~~~e~-~~lq~~ve~Lksele~~~e~~-~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKs 246 (620)
+..+...-....+++..+. -.++.+++.|+-+++.+.+.. ++.-+|+.+ ..|..+...-..||+.....-.-
T Consensus 63 k~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~L-----s~L~~EqEerL~ELE~~le~~~e- 136 (617)
T PF15070_consen 63 KNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQL-----SRLNQEQEERLAELEEELERLQE- 136 (617)
T ss_pred HHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5443322110111111111 246677788888887776543 334455543 33333333333344322211110
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHH
Q 007043 247 QKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEE 326 (620)
Q Consensus 247 KKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~ 326 (620)
=..|...=|.. +-+=.+-+-+|-+|--.||.-|....+.|-.|..+ |-|...=--+-.....|...
T Consensus 137 --~~~D~~kLLe~-----------lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne-~~elt~~lq~Eq~~~keL~~ 202 (617)
T PF15070_consen 137 --QQEDRQKLLEQ-----------LQSDKATASRALSQNRELKEQLAELQDAFVKLTNE-NMELTSALQSEQHVKKELQK 202 (617)
T ss_pred --HHHHHHHHHhh-----------hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hhHhhHHHHHHHHHHHHHHH
Confidence 01122222211 22222345566777777777777777777777654 22221111111111111111
Q ss_pred HHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHH
Q 007043 327 SLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEE---------------------TLKLRDILK 385 (620)
Q Consensus 327 s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE---------------------~~kLrd~LK 385 (620)
-...-..+=-.+..-|+.-..|+.+++.+.+.++.-|....-....+..+ +.+-+..+.
T Consensus 203 kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E 282 (617)
T PF15070_consen 203 KLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLE 282 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 11111111112234566667788888888887776665433211222222 222222333
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHhH
Q 007043 386 QAINEANVAKEASGIARAENARLQDAL 412 (620)
Q Consensus 386 qa~~Ean~a~Eale~AkaEn~~LKd~L 412 (620)
.+..|..-+++-|+-+.-+|-+|+..|
T Consensus 283 ~~~~ELq~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 283 MAHQELQEAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444555666666666666666664
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.92 E-value=47 Score=42.63 Aligned_cols=210 Identities=15% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHH---hhHHHHHHHHHhhHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKK---AESEELKLKLKNIED 297 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~---aqie~Lk~~Lk~tee 297 (620)
.+..+..+...+..+|..+...-+...+++..+....-.|+-. .|..|...+-..+...+ .+..-|+..|...+-
T Consensus 450 klee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (1486)
T PRK04863 450 KEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRS--EAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH--HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 3555566777777777777777777777777777777776543 33333333322333333 344556666666555
Q ss_pred HHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007043 298 SHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEET 377 (620)
Q Consensus 298 kye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~ 377 (620)
.|+.- .++.|+-.+|..-...--.-+-.|....-..|..+..+..+...+.+-.-....+...+....
T Consensus 528 ~~~~q------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i 595 (1486)
T PRK04863 528 RLRQQ------------QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARI 595 (1486)
T ss_pred HHHHH------------HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 224444444433111111112333333333444444443333333333222222222111221
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhh
Q 007043 378 LKLRDIL---KQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESS 451 (620)
Q Consensus 378 ~kLrd~L---Kqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~ 451 (620)
++|.-.= -++-.-+..+.+-.+....-+.++-.. +|.+....-.+++...-...++.-|...+...+
T Consensus 596 ~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~-------mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~ 665 (1486)
T PRK04863 596 QRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEY-------MQQLLERERELTVERDELAARKQALDEEIERLS 665 (1486)
T ss_pred HHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1211110 022222333444444333333333332 455555555566666666666777777776554
No 54
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.63 E-value=45 Score=41.80 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=46.9
Q ss_pred HhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhccc
Q 007043 398 SGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKES 455 (620)
Q Consensus 398 le~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k~~ 455 (620)
+.--+.+...||+-+.+++..|..++.+-..|+....+.+.++.|+++.++..+.+..
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~k 601 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNK 601 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3334555668888888889999999999999999999999999999998888776533
No 55
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.61 E-value=15 Score=36.33 Aligned_cols=165 Identities=24% Similarity=0.310 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhh--hhhh----h----hhhHHHHHH
Q 007043 3 QYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAAD--IYTM----N----ETLSKELKV 72 (620)
Q Consensus 3 ~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae--~~~e----~----~~l~~EL~i 72 (620)
+.+.-+++.|.+++..++..-..+.++-.++.++.+.+.+-..+...||.++.--- ..-. + ..+.+.+..
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~ 109 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQ 109 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999988874211 1111 1 123345555
Q ss_pred HHHhhHHhhH---HHHHHHHhhhhhHHHHhhhHHHhhhhH-----------HHHhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 007043 73 KEKNIESLKK---EWEIKLVEKDASLDELKGTLSNAKSSE-----------AHAMSLYSESKKKLQELELEVEKRKESEK 138 (620)
Q Consensus 73 ~e~~i~~LK~---~~E~kl~E~e~~ie~L~~el~~Ak~ae-----------s~a~~l~~EwK~Kv~~LE~ele~a~esE~ 138 (620)
....|..|+. .++.++.++..-...|......|+... +.+...|+.|..|+..+|.+.+...++.-
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~ 189 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD 189 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566777766 577777777777777766665554332 23456788999999999999998887553
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 007043 139 KMFDSFAAQTKQLEQTMIVFEESKFEINSLREK 171 (620)
Q Consensus 139 ~~~eSL~sqtKqLE~tk~lLeeaesEIasLkek 171 (620)
-..++.....+++..... - ..+++.|+.+
T Consensus 190 -~~~~~e~~l~~~~~~~~~-~--~~~La~LK~~ 218 (221)
T PF04012_consen 190 -SDQDLEAELEELERDSSV-S--EDELAALKAK 218 (221)
T ss_pred -CcccHHHHHHHhcCCCcc-h--HHHHHHHHhH
Confidence 112355555555543333 1 5556666553
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.01 E-value=52 Score=41.32 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=74.9
Q ss_pred HHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHH
Q 007043 341 CIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALN 420 (620)
Q Consensus 341 ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq 420 (620)
.|+.+.--+..++..+.+|-.-...++.+...+.++...+....-....+.+.+.+++.+++.+...++.. +.
T Consensus 929 ~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~-------~e 1001 (1293)
T KOG0996|consen 929 AIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSE-------LE 1001 (1293)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 45566666666666666666666777777777777777777777777788888889999999998888887 56
Q ss_pred HHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhc
Q 007043 421 FICRENEDLKMNEAANIESMKELKKLLSESSSK 453 (620)
Q Consensus 421 ~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k 453 (620)
++.+....|+...-..--++.+....|.+.-.+
T Consensus 1002 ~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~ 1034 (1293)
T KOG0996|consen 1002 NIKKSENELKAERIDIENKLEAINGELNEIESK 1034 (1293)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Confidence 666666666665555555666666666555443
No 57
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.98 E-value=0.066 Score=61.76 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHH-hHh-hhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007043 315 NTADRLTLEAEESLLAW-NEK-ETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEAN 392 (620)
Q Consensus 315 ~tverl~~Ea~~s~~eW-~~K-E~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean 392 (620)
..+.+|+.+.......+ -.| -..-|..|+..|.++..+..|+.+|-...... ..+++++..|+..|..+..
T Consensus 230 ~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~----elLeEe~~sLq~kl~~~E~--- 302 (722)
T PF05557_consen 230 QKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENV----ELLEEEKRSLQRKLERLEE--- 302 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHH---
Confidence 33555655544433322 011 12357889999999999999998888776543 4778888888888864432
Q ss_pred HHHHHHhHHHHhhhhhhHhHhhhHHHHH----------HHHHhhhhhhhhhhhhHHhHHHHHHHHH
Q 007043 393 VAKEASGIARAENARLQDALHAKEEALN----------FICRENEDLKMNEAANIESMKELKKLLS 448 (620)
Q Consensus 393 ~a~Eale~AkaEn~~LKd~L~dKEneLq----------~i~qEne~Lr~~EaaA~ekikELs~lL~ 448 (620)
+..-+..+..++..|.+-+.+=..-++ .|.+.+..||...+.-.+++..+..-+.
T Consensus 303 -~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 303 -LEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp ------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 222334445555555554433222222 2344455555555555555444444333
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.69 E-value=36 Score=38.94 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=13.8
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALAL 257 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL 257 (620)
+..+.+.+..|-.=|+.-..+.-.+.+.+..+...|
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l 319 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFL 319 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333444433333333333333333333333333
No 59
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.57 E-value=0.076 Score=61.25 Aligned_cols=76 Identities=33% Similarity=0.390 Sum_probs=0.0
Q ss_pred hHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhh----hhhhHHHHH
Q 007043 94 SLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEE----SKFEINSLR 169 (620)
Q Consensus 94 ~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLee----aesEIasLk 169 (620)
.+..|-.++..+.. ....+..++..+..|+.++..... ..+.|..-.++|......|+. ...+...|+
T Consensus 347 ~~~~LEeel~~~~~----~~~qle~~k~qi~eLe~~l~~~~~----~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 347 TKAMLEEELKKARA----LKSQLEEYKKQIQELEQKLSEESR----RADKLEFENKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544332 234677788888888887764332 223333333333332222222 233555666
Q ss_pred HHHHhhhh
Q 007043 170 EKLKKLES 177 (620)
Q Consensus 170 ekv~~LE~ 177 (620)
+.+..|+.
T Consensus 419 e~~eeL~~ 426 (713)
T PF05622_consen 419 ETNEELEC 426 (713)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 66666654
No 60
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.54 E-value=3.3 Score=44.04 Aligned_cols=59 Identities=31% Similarity=0.370 Sum_probs=43.5
Q ss_pred HHHHHH--------HHHHHHHHHHHHhhhh---HHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhh
Q 007043 115 LYSESK--------KKLQELELEVEKRKES---EKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLE 176 (620)
Q Consensus 115 l~~EwK--------~Kv~~LE~ele~a~es---E~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE 176 (620)
.++||| .||++||.+|++-+.- --+-+|||.. -|...+.-.++.+.+++.|+....+|=
T Consensus 4 a~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEA---aLqKQKqK~e~ek~e~s~LkREnq~l~ 73 (307)
T PF10481_consen 4 AVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEA---ALQKQKQKVEEEKNEYSALKRENQSLM 73 (307)
T ss_pred hHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 478998 7999999999965542 2344555554 466777778888899999988776663
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.47 E-value=44 Score=39.66 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=40.7
Q ss_pred HhhhhhHHHHhhhHHHhhhhHHHHhhH--------------HHHHHHHHHHHHHHHH---HhhhhHHhhhhhHHHHHHHH
Q 007043 89 VEKDASLDELKGTLSNAKSSEAHAMSL--------------YSESKKKLQELELEVE---KRKESEKKMFDSFAAQTKQL 151 (620)
Q Consensus 89 ~E~e~~ie~L~~el~~Ak~aes~a~~l--------------~~EwK~Kv~~LE~ele---~a~esE~~~~eSL~sqtKqL 151 (620)
..+|.-|..|+.||...+..|.+-++. ++.-+...++|+.++. .+++.++.-+.+|.-..++.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777888888888777777665 5556666777776554 45666665555554443333
Q ss_pred H
Q 007043 152 E 152 (620)
Q Consensus 152 E 152 (620)
-
T Consensus 501 ~ 501 (697)
T PF09726_consen 501 R 501 (697)
T ss_pred H
Confidence 3
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.98 E-value=0.091 Score=60.62 Aligned_cols=74 Identities=28% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHH---hhHHHHHHHH---HHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHA---MSLYSESKKK---LQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIV 157 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a---~~l~~EwK~K---v~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~l 157 (620)
++.++.+++..|..|+.....-...-..+ .+-++.|+.+ +.-||..++.-++ -..-+..|-.+++.|+.-+..
T Consensus 265 ~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKk-KLed~~~lk~qvk~Lee~N~~ 343 (713)
T PF05622_consen 265 LKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKK-KLEDLEDLKRQVKELEEDNAV 343 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666655553322222222 4567788764 4556666664443 111123445566666664443
Q ss_pred h
Q 007043 158 F 158 (620)
Q Consensus 158 L 158 (620)
|
T Consensus 344 l 344 (713)
T PF05622_consen 344 L 344 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.85 E-value=61 Score=40.30 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=42.7
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Q 007043 228 EVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKL 292 (620)
Q Consensus 228 Ek~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~L 292 (620)
.+..+..|-..-..+-+-.++.|+++...-.++-.+-+.+.-.+-..+.++...+-+|.+++..+
T Consensus 324 ~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 324 KIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556667777777776666666666666666666667777777777777666
No 64
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.28 E-value=49 Score=38.66 Aligned_cols=135 Identities=9% Similarity=0.063 Sum_probs=63.2
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhh-hhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhh
Q 007043 102 LSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMF-DSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDL 180 (620)
Q Consensus 102 l~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~-eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~ 180 (620)
...+..+-..-...+.+-+.++...|.+++.=+....... +.-...+.+|.+.+..|..++.+....+-....+...-.
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444555555566666666554443221111 111112355666666666666666665555555543200
Q ss_pred hhccc--------CcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHH
Q 007043 181 NASQS--------GLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNEL 236 (620)
Q Consensus 181 ~~~~~--------e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL 236 (620)
..... ........|..|+.++..++...++....=....-.|..+..++..|...+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 269 NGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred cCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 001223567778777777665544332221122234666666666665554
No 65
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.62 E-value=56 Score=38.27 Aligned_cols=172 Identities=28% Similarity=0.313 Sum_probs=112.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHH
Q 007043 218 SLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIED 297 (620)
Q Consensus 218 ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~tee 297 (620)
+-+.++-|..|+.+|-.||..++. ++.+-|==+|+ |--|-...+.+|-.-+++++.++.+++.++..|.....
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~--e~~qaAeyGL~-----lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTE--EKIQAAEYGLE-----LLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999988764 45555555553 33455678889999999999999999999999976665
Q ss_pred HHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH-HHHhHhhhhHHHHH-------HhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 007043 298 SHKLQLDELKKEADLYRNTADRLTLEAEESL-LAWNEKETRFVDCI-------KRAEEERDGAQQEHEAMLESLKEAENT 369 (620)
Q Consensus 298 kye~mLDEa~~E~~~lk~tverl~~Ea~~s~-~eW~~KE~~fV~ci-------K~sEEE~~s~~~E~~rL~esl~~aE~e 369 (620)
.++..- +-..+-++|. .+.-+||..++-.| |++.-++...+.|+.||......--.-
T Consensus 79 ~hkk~~---------------~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~ 143 (772)
T KOG0999|consen 79 QHKKVA---------------RDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES 143 (772)
T ss_pred HHHHhh---------------ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 555432 2222333333 45566777666555 566666667777777777666555555
Q ss_pred HHHhHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHhhhhhhHhH
Q 007043 370 TRAAKEETLKLRDILKQA-INEANVAKEASGIARAENARLQDAL 412 (620)
Q Consensus 370 ~~~~~eE~~kLrd~LKqa-~~Ean~a~Eale~AkaEn~~LKd~L 412 (620)
...+-++.-+||+-||.- .-|+.-+++= .+---||..|+-.+
T Consensus 144 ~~~~E~qR~rlr~elKe~KfRE~RllseY-SELEEENIsLQKqV 186 (772)
T KOG0999|consen 144 NAAVEDQRRRLRDELKEYKFREARLLSEY-SELEEENISLQKQV 186 (772)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHH
Confidence 666777788888888732 2333333322 22345566665554
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.33 E-value=56 Score=37.93 Aligned_cols=76 Identities=30% Similarity=0.389 Sum_probs=38.9
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHH
Q 007043 150 QLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEV 229 (620)
Q Consensus 150 qLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk 229 (620)
.+...-..|-+.+.++..++-.+..||.. ...+.+++..|+..|..++...-+....=.....+++.|++++
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e--------~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDE--------LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444555666666666666666643 1113334444444444444444333333333344677777777
Q ss_pred HHHH
Q 007043 230 RFLK 233 (620)
Q Consensus 230 ~~L~ 233 (620)
+.+.
T Consensus 214 ~f~~ 217 (546)
T KOG0977|consen 214 AFLK 217 (546)
T ss_pred HHHH
Confidence 7776
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.01 E-value=80 Score=39.29 Aligned_cols=250 Identities=18% Similarity=0.190 Sum_probs=112.8
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHH
Q 007043 150 QLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEV 229 (620)
Q Consensus 150 qLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk 229 (620)
-|-+...-|+.-..+++.|...+.+|+.. +..-..|+.+|++..-..+...++ ...+.+..+..+.
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~------------~~kf~~l~~ql~l~~~~l~l~~~r--~~~~e~~~~~~~~ 743 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQ------------SQKFRDLKQQLELKLHELALLEKR--LEQNEFHKLLDDL 743 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH--HhcChHhhHHHHH
Confidence 33444444555666666666666666642 223345566666555554444433 2223344444455
Q ss_pred HHHHHHHhHhHHHH----HhhhhhHHHHHHHHHHHhHHHHHHH-HHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Q 007043 230 RFLKNELKLVTGAE----ENNQKALDDLALALKEVALEASQAK-EKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLD 304 (620)
Q Consensus 230 ~~L~~EL~~a~~eE----EKsKKAMEdLA~AL~EVS~EAreaK-ekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLD 304 (620)
..+..+++.+...= ..-|+.++-. +-|--.-.++.--+ -+|-..+.+|.-+...++.-...++..+..|+.+.=
T Consensus 744 ~~~~e~v~e~~~~Ike~~~~~k~~~~~i-~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~l 822 (1174)
T KOG0933|consen 744 KELLEEVEESEQQIKEKERALKKCEDKI-STLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQL 822 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444443322 1222222211 11111111222111 234445556666666666665555555555554444
Q ss_pred HhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007043 305 ELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDIL 384 (620)
Q Consensus 305 Ea~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~L 384 (620)
| ++.|..+...+.-.|.+.+.. +.++..|+..|-..+..++.....+-.+.......+
T Consensus 823 E-----------~e~l~~e~~~~k~~l~~~~~~-----------~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~ 880 (1174)
T KOG0933|consen 823 E-----------HEELEKEISSLKQQLEQLEKQ-----------ISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQ 880 (1174)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 3 566666666666666655432 333444444444444444444443333333333333
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHH
Q 007043 385 KQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKEL 443 (620)
Q Consensus 385 Kqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikEL 443 (620)
...--+++-.--.-+.-..|++..+. +.+-+.+|.+.+....+++..+|.-|
T Consensus 881 ~~~dt~i~~~~~~~e~~~~e~~~~~l-------~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 881 RDIDTEISGLLTSQEKCLSEKSDGEL-------ERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred HhhhHHHhhhhhHHHHHHHHhhcccc-------hHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 33333332111111111233333333 34455566666666666665555443
No 68
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.59 E-value=73 Score=38.39 Aligned_cols=87 Identities=23% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKF 163 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaes 163 (620)
.+....++...++.|...+.+.-.-.-.-.--...|+.+...+...+....+.-...-..+...+..|++....+...+.
T Consensus 359 ~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~ 438 (908)
T COG0419 359 LEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEE 438 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555655555433333333445566666666666666666665555555555555556555555555555
Q ss_pred hHHHHHH
Q 007043 164 EINSLRE 170 (620)
Q Consensus 164 EIasLke 170 (620)
.+..+..
T Consensus 439 ~~~~~~~ 445 (908)
T COG0419 439 QINQLES 445 (908)
T ss_pred HHHHHHH
Confidence 5555544
No 69
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.20 E-value=11 Score=40.19 Aligned_cols=123 Identities=24% Similarity=0.300 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007043 297 DSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEE 376 (620)
Q Consensus 297 ekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE 376 (620)
+.+..-++.+.+|.++|..-+.++. .+..--..+...+.++..+..|-.++..-|...|.+...+..+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~e 79 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLE------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQE 79 (314)
T ss_dssp ------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667888899999999888887 2223345567778888888888888888888777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHH
Q 007043 377 TLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKK 445 (620)
Q Consensus 377 ~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~ 445 (620)
...|...++....+ |. +.-.......-++..+..+.+.|...=..+...+.-|++
T Consensus 80 l~~le~e~~~l~~e-------------E~-~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 80 LEELEEELEELDEE-------------EE-EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHH-------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHH-------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544322111 11 222222333333444555555555554455555555554
No 70
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.18 E-value=95 Score=39.28 Aligned_cols=93 Identities=26% Similarity=0.296 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHH-HHHHHHHHHHHHhhhhH------------HhhhhhHHHHHH
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESK-KKLQELELEVEKRKESE------------KKMFDSFAAQTK 149 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK-~Kv~~LE~ele~a~esE------------~~~~eSL~sqtK 149 (620)
..+++...+++.|-+|.-+|.+++...+.+.+.....- .+.+..++.++-..+++ .+.+.++.+.+.
T Consensus 505 ~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~ 584 (1317)
T KOG0612|consen 505 EEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENR 584 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccc
Confidence 45667777788888888888888777777765554432 22222223332222222 112223333333
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHhh
Q 007043 150 QLEQTMIVFEESKFEINSLREKLKKL 175 (620)
Q Consensus 150 qLE~tk~lLeeaesEIasLkekv~~L 175 (620)
.++++..+|+.+++....+..++...
T Consensus 585 ~~~d~l~~le~~k~~ls~~~~~~~~~ 610 (1317)
T KOG0612|consen 585 DLEDKLSLLEESKSKLSKENKKLRSE 610 (1317)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777766666666555544
No 71
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.94 E-value=71 Score=37.54 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhh
Q 007043 394 AKEASGIARAENARLQDALHAKEEALNFICRENE 427 (620)
Q Consensus 394 a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne 427 (620)
+..-++......-.|++.|..|+.+++++.++++
T Consensus 200 L~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 200 LQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455566666666888888888888888766554
No 72
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.71 E-value=45 Score=34.07 Aligned_cols=123 Identities=16% Similarity=0.164 Sum_probs=68.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 007043 189 GTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAK 268 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaK 268 (620)
.+..++++||+-+...++.....+.--+..-...+.|..++..|..|..--..+-++.++.+.+|+.-=...-...-+..
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34567777777777777766555544333444456666666666666666666677888888888651100000111111
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHh
Q 007043 269 EKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRN 315 (620)
Q Consensus 269 ekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~ 315 (620)
.-+...-+.+..--.+|++|+..+ +-|..+..+.|-||-.|-.
T Consensus 144 ~l~~~~da~l~e~t~~i~eL~~~i----eEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 144 SLICQRDAILSERTQQIEELKKTI----EEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 222223333444445666666555 6677777776666655543
No 73
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=85.45 E-value=90 Score=37.37 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhHhHHH-HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Q 007043 225 LLEEVRFLKNELKLVTGA-EENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQL 303 (620)
Q Consensus 225 L~EEk~~L~~EL~~a~~e-EEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mL 303 (620)
|.+|.++|..||..+-.- .-++..|=|..-+-+...+..+++....|...|..+.....|.+ .+...|+.-
T Consensus 483 LReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~-------~Ar~~lqes- 554 (739)
T PF07111_consen 483 LREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLE-------AARKSLQES- 554 (739)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHH-
Confidence 355778888887754433 35666777777777777777777777777777666655544444 444444322
Q ss_pred HHhhhHHHHHHhhHHHHHHHHHHHHH-HHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007043 304 DELKKEADLYRNTADRLTLEAEESLL-AWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRD 382 (620)
Q Consensus 304 DEa~~E~~~lk~tverl~~Ea~~s~~-eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd 382 (620)
..+..+|+--+.+.......... -...=|..+..-+...|--.+-++.|.++-|-+|+..+-....-++-+..++.
T Consensus 555 ---~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~ 631 (739)
T PF07111_consen 555 ---TEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRR 631 (739)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 23455666666666655554443 33345777888889999999999999999999999999877776766777766
Q ss_pred HH
Q 007043 383 IL 384 (620)
Q Consensus 383 ~L 384 (620)
.-
T Consensus 632 lq 633 (739)
T PF07111_consen 632 LQ 633 (739)
T ss_pred HH
Confidence 64
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.84 E-value=39 Score=32.69 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=15.4
Q ss_pred hhhhhhhhHHHHHHHHHhhhh
Q 007043 157 VFEESKFEINSLREKLKKLES 177 (620)
Q Consensus 157 lLeeaesEIasLkekv~~LE~ 177 (620)
-|..++++-++|+++|.+||.
T Consensus 11 kLK~~~~e~dsle~~v~~LEr 31 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLER 31 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHH
Confidence 355677888888888777765
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.64 E-value=87 Score=36.48 Aligned_cols=214 Identities=24% Similarity=0.283 Sum_probs=129.3
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK 300 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye 300 (620)
.|..|-+|...|+.-+..+.....-.+.=.++.-.+|.++-++-..+|.|.-...+++.+.++++.+|...|+.+.
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r---- 189 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR---- 189 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----
Confidence 3667777777777777777666666677788899999999999999999999999999999999999999998874
Q ss_pred HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHH--HhhHHHHhhHHHHH---------HHHHHHHHHHHHH
Q 007043 301 LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCI--KRAEEERDGAQQEH---------EAMLESLKEAENT 369 (620)
Q Consensus 301 ~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ci--K~sEEE~~s~~~E~---------~rL~esl~~aE~e 369 (620)
..||...-=..-+-+.+.-|. .|+.|+..+ ....++..-++... ++|-.++++-..+
T Consensus 190 ~~ld~Etllr~d~~n~~q~Ll------------eel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaq 257 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLL------------EELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQ 257 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHH------------HHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH
Confidence 333332111111222222221 233444333 22334444444444 3444444433222
Q ss_pred H----HHhHHHHH-HHHHHH-------HHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh-------
Q 007043 370 T----RAAKEETL-KLRDIL-------KQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLK------- 430 (620)
Q Consensus 370 ~----~~~~eE~~-kLrd~L-------Kqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr------- 430 (620)
- ...|.+.. -.+..+ ..+..+.|++.|=+...|.-...|+-.|.+=|..-..+...+++|+
T Consensus 258 ye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~ 337 (546)
T KOG0977|consen 258 YEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQ 337 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhh
Confidence 1 11222111 111111 1233456667777777777777787777777776666666666554
Q ss_pred -hhhhhhHHhHHHHHHHHHhh
Q 007043 431 -MNEAANIESMKELKKLLSES 450 (620)
Q Consensus 431 -~~EaaA~ekikELs~lL~ea 450 (620)
..|++--+|..++-+|=.++
T Consensus 338 r~~e~~L~~kd~~i~~mReec 358 (546)
T KOG0977|consen 338 RSFEQALNDKDAEIAKMREEC 358 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 45666666666655554444
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.61 E-value=1.2e+02 Score=38.02 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=24.2
Q ss_pred HHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHH
Q 007043 327 SLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKE 365 (620)
Q Consensus 327 s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~ 365 (620)
....|...+..+=.-|.....++...+.+...-+..+..
T Consensus 719 ~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~ 757 (1201)
T PF12128_consen 719 LKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQ 757 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777766666666666666666666655544443
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.54 E-value=15 Score=34.52 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=39.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHh
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMR 46 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~k 46 (620)
||+++.....++...+.+|..++.+|+.+-+||-..-...++....
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999998877766666443
No 78
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.76 E-value=55 Score=33.47 Aligned_cols=64 Identities=23% Similarity=0.357 Sum_probs=53.1
Q ss_pred hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 007043 336 TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILK---QAINEANVAKEASG 399 (620)
Q Consensus 336 ~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LK---qa~~Ean~a~Eale 399 (620)
..++.||.-.+--+..+..||.+|--++-.++.-+.....++..|+.-++ +++..+..+.+-++
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEle 70 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELE 70 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999998875 55555544444444
No 79
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.54 E-value=4.3 Score=43.28 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHH----------HHHHHHhhhHHHHHHhhHHHHHH
Q 007043 264 ASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSH----------KLQLDELKKEADLYRNTADRLTL 322 (620)
Q Consensus 264 AreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teeky----------e~mLDEa~~E~~~lk~tverl~~ 322 (620)
.|-.|.||...+.-|..-.++|++||.-|-.+.+-+ ++.|-|||+||--||-.||-+++
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888888888877654 57888888888888888888754
No 80
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.45 E-value=67 Score=34.25 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh----hhHHHHHHHHhhHHHHHHHHHhhHHHH
Q 007043 224 SLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLT----STEAELEVKKAESEELKLKLKNIEDSH 299 (620)
Q Consensus 224 ~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll----~~Q~ElE~a~aqie~Lk~~Lk~teeky 299 (620)
+|.+....|..+...-....+.....+..|..-...+..+....+.... .-+.+|+.++.++..+...+...+
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k--- 229 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKK--- 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3344455555555555555566666666666555555555555555433 224455555555555555543332
Q ss_pred HHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHH
Q 007043 300 KLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQ 354 (620)
Q Consensus 300 e~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~ 354 (620)
.-+++.+.+..-+...++.+..+-.....+=..-+...-.|=.-+..|+..++.
T Consensus 230 -~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 230 -KELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 223344444444444444444444444443333333333333333333333333
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.66 E-value=47 Score=31.28 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=48.2
Q ss_pred hHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007043 337 RFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINE 390 (620)
Q Consensus 337 ~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~E 390 (620)
..+.++...+.++..++...+-+++.+.+...++...+....-|+++.+..+.+
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788899999999999999999999999999999999999999988764
No 82
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.59 E-value=1.6e+02 Score=37.45 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=14.9
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHhhhhh
Q 007043 149 KQLEQTMIVFEESKFEINSLREKLKKLESR 178 (620)
Q Consensus 149 KqLE~tk~lLeeaesEIasLkekv~~LE~~ 178 (620)
.+|......+.....+|+.|...+..|..+
T Consensus 749 ~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 749 ARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555443
No 83
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=81.58 E-value=1.1e+02 Score=35.41 Aligned_cols=257 Identities=18% Similarity=0.173 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhHHHHHHH--------HHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchh
Q 007043 121 KKLQELELEVEKRKESEKKMFDSFAAQTKQ--------LEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNE 192 (620)
Q Consensus 121 ~Kv~~LE~ele~a~esE~~~~eSL~sqtKq--------LE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~ 192 (620)
.+++.|+.+--+ =++.-.|+++-.++||+ |++.++-.+..+.||.+|+.+...|-.
T Consensus 295 ~~i~~l~ek~r~-l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~--------------- 358 (622)
T COG5185 295 QKIKTLREKWRA-LKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHK--------------- 358 (622)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------------
Confidence 344444443322 23455677777788776 667777777788888888887655521
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 007043 193 TVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLT 272 (620)
Q Consensus 193 ~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll 272 (620)
. +.+--.+.++|.-...|+..|-+||+--.-.-++-.|-+-+--.-.++...+.--.=-+|-
T Consensus 359 -------q-----------~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~ 420 (622)
T COG5185 359 -------Q-----------LRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYD 420 (622)
T ss_pred -------H-----------HHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111245556777777777777777655444333333222211111111111111111122
Q ss_pred hhHHHHHHHHhhHHH-------------HHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHH
Q 007043 273 STEAELEVKKAESEE-------------LKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFV 339 (620)
Q Consensus 273 ~~Q~ElE~a~aqie~-------------Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV 339 (620)
..-.+|-.-++||.- +.-.--..+++..-...|.|.+|+.+-.|-+.--.-.++....-++-=..+-
T Consensus 421 sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~ 500 (622)
T COG5185 421 SLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELT 500 (622)
T ss_pred HHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHH
Confidence 222222222233221 1111113455666677777777777666644321111111111122222334
Q ss_pred HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHH
Q 007043 340 DCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEAL 419 (620)
Q Consensus 340 ~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneL 419 (620)
+.....|.+.+.+ +.....+-..+|++..+.+-|-.+|-..|.+.-- --+-++++=|.-+
T Consensus 501 ~~l~~~e~~L~~a---~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL-----------------~s~ts~l~~eq~v 560 (622)
T COG5185 501 QILEKLELELSEA---NSKFELSKEENERELVAQRIEIEKLEKELNDLNL-----------------LSKTSILDAEQLV 560 (622)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh-----------------hccchHhhHHHHH
Confidence 4455555555555 3444445556677777777777776555422111 2245566667777
Q ss_pred HHHHHhhhhhhh
Q 007043 420 NFICRENEDLKM 431 (620)
Q Consensus 420 q~i~qEne~Lr~ 431 (620)
|++.=+.+.+.+
T Consensus 561 qs~~i~ld~~~~ 572 (622)
T COG5185 561 QSTEIKLDELKV 572 (622)
T ss_pred HHHHhhHHHHHH
Confidence 777777766664
No 84
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=81.38 E-value=1.1e+02 Score=35.22 Aligned_cols=249 Identities=19% Similarity=0.175 Sum_probs=136.2
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHh---------
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQ--------- 153 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~--------- 153 (620)
.++..|...+..|..+..+|..-...+..-+.-+.+.+.+-+.|-..|-.-+-+==...+.|..+..+++.
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt 184 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELT 184 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888888888888888888888887775554444444444444443332
Q ss_pred -------hhhhhhhhhhhHHHHHHHHHhhhhh-hhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhH
Q 007043 154 -------TMIVFEESKFEINSLREKLKKLESR-DLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSL 225 (620)
Q Consensus 154 -------tk~lLeeaesEIasLkekv~~LE~~-~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L 225 (620)
+.-.|...+.++..|.+.+..+..- ..... .+-..++.|+.-.+.+.... ..++. -.....|..+
T Consensus 185 ~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~-----~~P~ql~eL~~gy~~m~~~g-y~l~~-~~i~~~i~~i 257 (560)
T PF06160_consen 185 ENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQK-----EFPDQLEELKEGYREMEEEG-YYLEH-LDIEEEIEQI 257 (560)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HhHHHHHHHHHHHHHHHHCC-CCCCC-CCHHHHHHHH
Confidence 3334444444555555544433221 00000 11223334444333333321 11221 1222334444
Q ss_pred HHHHHHHHH-----HHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 007043 226 LEEVRFLKN-----ELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK 300 (620)
Q Consensus 226 ~EEk~~L~~-----EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye 300 (620)
.+.+..+.. +|+.+...-+......|.|-..|.-=-.--+.+...+-....-|.|++.+...|...+.....+|.
T Consensus 258 ~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 258 EEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT 337 (560)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444443333 233334444444444444444443322233455666666666778888888888888888888885
Q ss_pred HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHH
Q 007043 301 LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFV 339 (620)
Q Consensus 301 ~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV 339 (620)
.--+|. ...--|.+.+..+...+......+......|-
T Consensus 338 L~~~e~-~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS 375 (560)
T PF06160_consen 338 LNHNEL-EIVRELEKQLKELEKRYEDLEERIEEQQVPYS 375 (560)
T ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH
Confidence 433332 12234445566666667766777777766554
No 85
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.96 E-value=94 Score=37.47 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhhhhhhhhhhHHHHHHHH-----HhhHHhhHHHHHHHHh------hhhhHHHHhhhHHH
Q 007043 36 MKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKE-----KNIESLKKEWEIKLVE------KDASLDELKGTLSN 104 (620)
Q Consensus 36 akk~AdEan~kL~eal~a~k~ae~~~e~~~l~~EL~i~e-----~~i~~LK~~~E~kl~E------~e~~ie~L~~el~~ 104 (620)
+.++=+|-|-+|.+|+.--..-.- .+.|..+-+.+- ..-..||.++-.|+.| .-.-+|-|+.++..
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~K---le~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~ 589 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYK---LDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVAS 589 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHH---HHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 677778999999887543221110 022222222111 1255677777777777 66666777777666
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 007043 105 AKSSEAHAMSLYSESKKKLQELELEVE 131 (620)
Q Consensus 105 Ak~aes~a~~l~~EwK~Kv~~LE~ele 131 (620)
.. +. ....+-.+.|.||..+=.+++
T Consensus 590 ~g-~s-~~~~~~~~lkeki~~~~~Ei~ 614 (762)
T PLN03229 590 SG-AS-SGDELDDDLKEKVEKMKKEIE 614 (762)
T ss_pred cC-cc-ccCCCCHHHHHHHHHHHHHHH
Confidence 33 22 223777888999888876555
No 86
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.62 E-value=1.6e+02 Score=36.17 Aligned_cols=386 Identities=19% Similarity=0.173 Sum_probs=185.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHhh---HHHHhhhhhhhhhh----------hhhhhHHHHHHHHHhhHHhhHH-------HH
Q 007043 26 RDRALDELHEMKRMAQEANMRL---SETMSTRKAADIYT----------MNETLSKELKVKEKNIESLKKE-------WE 85 (620)
Q Consensus 26 k~r~~dEL~eakk~AdEan~kL---~eal~a~k~ae~~~----------e~~~l~~EL~i~e~~i~~LK~~-------~E 85 (620)
+..+-+.|++++-.-++.|..| -.+|+|+.. +++. ++..+.-+++.+..++.+++.. +.
T Consensus 129 i~~~q~d~ke~etelE~~~srlh~le~eLsAk~~-eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 129 IQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH-DIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH-HHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777654 345555432 1111 1123446777888888888874 34
Q ss_pred HHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHH---------HHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhh
Q 007043 86 IKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESK---------KKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMI 156 (620)
Q Consensus 86 ~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK---------~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~ 156 (620)
+.+.+.+..+-.++.+-..-+..=.+..+|-+... .+++++-+-|+..+. -+.--|.||+.-++
T Consensus 208 e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak-------~ieE~m~qlk~kns 280 (1265)
T KOG0976|consen 208 EDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAK-------EIEEKMRQLKAKNS 280 (1265)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44445555555555554444444444444444332 233344333333222 12223445555555
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHH----HHhhHHHHHHHH
Q 007043 157 VFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLL----KVRSLLEEVRFL 232 (620)
Q Consensus 157 lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass----~i~~L~EEk~~L 232 (620)
.|.+-.|+ ...-|..+.-+|++.++..++|+..=--|.- .+-.++.+|--|
T Consensus 281 ~L~~ElSq-------------------------keelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadi 335 (1265)
T KOG0976|consen 281 VLGDELSQ-------------------------KEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI 335 (1265)
T ss_pred HHhhhhhH-------------------------HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443 2233444444444444444444332111111 222344445555
Q ss_pred HHHHhHhHH----------HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH-----------
Q 007043 233 KNELKLVTG----------AEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLK----------- 291 (620)
Q Consensus 233 ~~EL~~a~~----------eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~----------- 291 (620)
+..|.-++- +-||-+.-..-=+--|+++----++-+..|+.-|++++ -||+.||.-
T Consensus 336 rc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerq---eQidelKn~if~~e~~~~dh 412 (1265)
T KOG0976|consen 336 RCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQ---EQIDELKNHIFRLEQGKKDH 412 (1265)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhccchh
Confidence 555444432 22332222222244566666666777778888777754 577777653
Q ss_pred ------HHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHH----------HHhhHHHH
Q 007043 292 ------LKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEE----------ERDGAQQE 355 (620)
Q Consensus 292 ------Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEE----------E~~s~~~E 355 (620)
|..|.++.-.|=-+ +-.+|---.+.--|..-++-+...--+.=..+|+.|+.... +..-++.|
T Consensus 413 e~~kneL~~a~ekld~mgth-l~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKae 491 (1265)
T KOG0976|consen 413 EAAKNELQEALEKLDLMGTH-LSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAE 491 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhHH-HHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHH
Confidence 33333333222110 00000001111222222222222222222345555554433 33333333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhHHHHhhhhhhHhHhhhH
Q 007043 356 HEAMLESLKEAENTTRAAKEETLKLRDILKQ-------------------AINEANVAKEASGIARAENARLQDALHAKE 416 (620)
Q Consensus 356 ~~rL~esl~~aE~e~~~~~eE~~kLrd~LKq-------------------a~~Ean~a~Eale~AkaEn~~LKd~L~dKE 416 (620)
+.|-..- ..-.+++.++.+=-+.+ +-.|...|+.+....++.|-++.-.|..=-
T Consensus 492 n~rqakk-------iefmkEeiQethldyR~els~lA~r~ag~h~adssqrdselrsAkktIqevkadn~k~q~lL~evr 564 (1265)
T KOG0976|consen 492 NERQAKK-------IEFMKEEIQETHLDYRSELSELAHRKAGDHPADSSQRDSELRSAKKTIQEVKADNPKAQSLLAEVR 564 (1265)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccHHHHHHHHHHHhccccCHHHHHHhhchh
Confidence 3322111 11223333333222223 333444577777777888887777765544
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhccc
Q 007043 417 EALNFICRENEDLKMNEAANIESMKELKKLLSESSSKES 455 (620)
Q Consensus 417 neLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k~~ 455 (620)
.--.-+-.+|.-||--=+.|..+|.+-...--++...++
T Consensus 565 q~q~k~leenv~lRkgma~a~~kIee~kr~w~nsret~e 603 (1265)
T KOG0976|consen 565 QRQKKSLEENVFLRKGMARAHHKIEERKRVWLNSRETKE 603 (1265)
T ss_pred hhhhhccChHHHHHHHHHHHHhhhHHHHhhhhhhHHHHH
Confidence 444445678899998888999999998877666554443
No 87
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.31 E-value=23 Score=38.03 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=52.7
Q ss_pred HHHHHHhhHHhhH---HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHH-HHHHHHHHHHHhhhhHHhhhhhHH
Q 007043 70 LKVKEKNIESLKK---EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKK-KLQELELEVEKRKESEKKMFDSFA 145 (620)
Q Consensus 70 L~i~e~~i~~LK~---~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~-Kv~~LE~ele~a~esE~~~~eSL~ 145 (620)
||.||..|-+||. +-+.+|-++|.-|++||.+|.. | =++|-. --.-.|++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~R--M--------rEDWIEEECHRVEAQ---------------- 116 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLAR--M--------REDWIEEECHRVEAQ---------------- 116 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--H--------HHHHHHHHHHHHHHH----------------
Confidence 6889999999998 7999999999999999999964 2 246642 11222333
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHhhh
Q 007043 146 AQTKQLEQTMIVFEESKFEINSLREKLKKLE 176 (620)
Q Consensus 146 sqtKqLE~tk~lLeeaesEIasLkekv~~LE 176 (620)
-.|-||+.||-+|++=|...=
T Consensus 117 ----------LALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 117 ----------LALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888776553
No 88
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.42 E-value=84 Score=32.20 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhH
Q 007043 298 SHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAE 346 (620)
Q Consensus 298 kye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sE 346 (620)
..--|+.+..+........+.++..|-+...+.-++=|.+|-+..++.|
T Consensus 52 ~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 52 TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344555555555555555666666666666666666666666666555
No 89
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.32 E-value=59 Score=30.35 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 007043 193 TVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLT 272 (620)
Q Consensus 193 ~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll 272 (620)
++.+|.+++..+.... ..+...+..+.+++.....-...|..-.|..=--=-+.+-+|..+-.++..++..+.
T Consensus 4 e~~~l~~e~~~~~~~~-------~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQE-------EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444332 233345666666666666666655554443322222336666667777777777776
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhh
Q 007043 273 STEAELEVKKAESEELKLKLKNIEDSHKLQLDELK 307 (620)
Q Consensus 273 ~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~ 307 (620)
..+.+.+.|+...+..+.+...-+..|+.=+++++
T Consensus 77 ~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~ 111 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEASWEEQKEQLEKELSELE 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66667777776666666666666666665555443
No 90
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.14 E-value=87 Score=32.21 Aligned_cols=112 Identities=26% Similarity=0.268 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHH-------------HHHH
Q 007043 142 DSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLA-------------KDKL 208 (620)
Q Consensus 142 eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~-------------~e~~ 208 (620)
+++.+-+-+|+.+..-|+-..+++..|++++..|+.+ |-.|+..+..+ .+.+
T Consensus 59 ~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~E---------------l~~Lr~~l~~~~~~~~~~~~l~~~deak 123 (202)
T PF06818_consen 59 DSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAE---------------LAELREELACAGRLKRQCQLLSESDEAK 123 (202)
T ss_pred HHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHH---------------HHHHHHHHHhhccchhhhccccccchhH
Confidence 5677778899999999999999999999999999854 11122221111 1111
Q ss_pred HhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHH
Q 007043 209 AISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELE 279 (620)
Q Consensus 209 ~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE 279 (620)
++-.+ ...-+++|..+..+|+.||..-+..- ++.++.+..==--=.+-|++++.-|..|-
T Consensus 124 ~~~~~----~~~~~~~l~~e~erL~aeL~~er~~~-------e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ 183 (202)
T PF06818_consen 124 AQRQA----GEDELGSLRREVERLRAELQRERQRR-------EEQRSSFEQERRTWQEEKEKVIRYQKQLQ 183 (202)
T ss_pred Hhhcc----ccccchhHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11236777888888888887655443 44444444333333455777777776654
No 91
>PRK01156 chromosome segregation protein; Provisional
Probab=77.70 E-value=1.6e+02 Score=35.12 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 007043 6 RTVEDTLKMTKDRLDAAEKERDRALDELHEMKR 38 (620)
Q Consensus 6 ~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk 38 (620)
..++.+|...+.++...+.....+..++...+.
T Consensus 193 ~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~ 225 (895)
T PRK01156 193 KSSNLELENIKKQIADDEKSHSITLKEIERLSI 225 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444544444444444444444333
No 92
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.67 E-value=1e+02 Score=32.32 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKL 292 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~L 292 (620)
.|+.|+-++.+|......-..+-.+.+-=.+.+--+|-..-.+.-..+..+..-+.+|..++.++.++...|
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555443333332222222222222222233333344455555566666666666666655
No 93
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.47 E-value=96 Score=31.84 Aligned_cols=181 Identities=15% Similarity=0.218 Sum_probs=84.2
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhh-HH---HHHHhhHHHHHHHHHHHHHHHhHhhhhHHH
Q 007043 265 SQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKK-EA---DLYRNTADRLTLEAEESLLAWNEKETRFVD 340 (620)
Q Consensus 265 reaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~-E~---~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ 340 (620)
..+-.+-.......+.....+.+|...+.+.......++..+.+ -- ..-..++.++-.++.....+-+.+ .|..
T Consensus 69 ~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~ 146 (264)
T PF06008_consen 69 TKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR--DFTP 146 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc--cchh
Confidence 33333333334444455555555555555555555544444311 00 111223666666677666666655 6888
Q ss_pred HHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHH
Q 007043 341 CIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALN 420 (620)
Q Consensus 341 ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq 420 (620)
+-..++.|...+..=.+++-..+..-- ...+.-...+++.|.+-......+++++..|.+=..+--+....=...|.
T Consensus 147 ~~~~Ae~El~~A~~LL~~v~~~~~~~~---~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~ 223 (264)
T PF06008_consen 147 QRQNAEDELKEAEDLLSRVQKWFQKPQ---QENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLE 223 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777543333333321111 11111122345555555555666666666664433332233222233333
Q ss_pred HHHHhhhhhhhhhhhhHHhHHHHHHHHHhh
Q 007043 421 FICRENEDLKMNEAANIESMKELKKLLSES 450 (620)
Q Consensus 421 ~i~qEne~Lr~~EaaA~ekikELs~lL~ea 450 (620)
.+..-...++-.-..+.+-|.+=..+|..+
T Consensus 224 ~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a 253 (264)
T PF06008_consen 224 DLEKKKQELSEQQNEVSETLKEAEDLLDQA 253 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444333
No 94
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.63 E-value=1.9e+02 Score=34.80 Aligned_cols=262 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhH-HHHhhhhhhhhhhhhhhhHHHHH-HHHHhhHH
Q 007043 2 QQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLS-ETMSTRKAADIYTMNETLSKELK-VKEKNIES 79 (620)
Q Consensus 2 q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~-eal~a~k~ae~~~e~~~l~~EL~-i~e~~i~~ 79 (620)
+..+..+-.+-.++++-++......-.+--=|...+-+-++.+.+|+ -| ..|.++++|.|. +...++..
T Consensus 349 ~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka---------~~E~e~l~q~l~~~~k~e~~e 419 (698)
T KOG0978|consen 349 KILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKA---------RAETESLLQRLKALDKEERSE 419 (698)
T ss_pred HhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhH----HHHHHHHhhhhhHHHHhhhHHHhh--hhHHHH-hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 007043 80 LKK----EWEIKLVEKDASLDELKGTLSNAK--SSEAHA-MSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLE 152 (620)
Q Consensus 80 LK~----~~E~kl~E~e~~ie~L~~el~~Ak--~aes~a-~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE 152 (620)
++. .++-+..+....++.|.+-..+.+ .++..+ -+.+++......-|=.+|.++..-..++.-+.+.+.....
T Consensus 420 ~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k 499 (698)
T KOG0978|consen 420 IRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHK 499 (698)
T ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhh-hhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHH
Q 007043 153 QTMIVFEESKFEINSLREKLKKLESR-DLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRF 231 (620)
Q Consensus 153 ~tk~lLeeaesEIasLkekv~~LE~~-~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~ 231 (620)
-....+.....+|.+|...+..++.. +....+ +..-++.++++..+...
T Consensus 500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq------------------------------~~~lt~~~~~l~~el~~ 549 (698)
T KOG0978|consen 500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQ------------------------------ERGLTSNESKLIKELTT 549 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHhhHhhhhhHHHHHH
Q ss_pred HHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 007043 232 LKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQ 302 (620)
Q Consensus 232 L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~m 302 (620)
+..=|+..+----..++-.++|=..+....+...+.+..|...-.+|+.-.-..-+|...+...+-+|+.+
T Consensus 550 ~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 550 LTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 95
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.23 E-value=1.6e+02 Score=33.85 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=85.2
Q ss_pred hhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHhhhhhhHh
Q 007043 335 ETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILK---QAINEANVAKEASGIARAENARLQDA 411 (620)
Q Consensus 335 E~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LK---qa~~Ean~a~Eale~AkaEn~~LKd~ 411 (620)
=..+.+.|......+..+..|+++|-.+-.-..++....+.-..+|..+-+ ......+.-.-+......+-..+.+.
T Consensus 308 ~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~ 387 (560)
T PF06160_consen 308 LKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQ 387 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 345677788888889999999999988877666666555555555444433 22222222222334445556677888
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhh
Q 007043 412 LHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSS 452 (620)
Q Consensus 412 L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~ 452 (620)
|..=+.....+......||-.|..|.+++..|+..|.++--
T Consensus 388 l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 388 LEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999998853
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.21 E-value=1.4e+02 Score=33.18 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=13.6
Q ss_pred hhhHHHHHHhhHHHHhhHHHHHHHHHHHH
Q 007043 335 ETRFVDCIKRAEEERDGAQQEHEAMLESL 363 (620)
Q Consensus 335 E~~fV~ciK~sEEE~~s~~~E~~rL~esl 363 (620)
..||.+.|-.. -+-.+-..+++++..+
T Consensus 414 ~~g~~~~i~~~--~l~~~n~~~~~~L~~l 440 (562)
T PHA02562 414 DSGIKASIIKK--YIPYFNKQINHYLQIM 440 (562)
T ss_pred hhhHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 35666544422 2333344566666665
No 97
>PRK01156 chromosome segregation protein; Provisional
Probab=74.73 E-value=1.9e+02 Score=34.51 Aligned_cols=6 Identities=17% Similarity=0.075 Sum_probs=2.9
Q ss_pred CCCCCC
Q 007043 574 DLDNLE 579 (620)
Q Consensus 574 ~fD~~d 579 (620)
-|.++|
T Consensus 834 pt~~lD 839 (895)
T PRK01156 834 PTAFLD 839 (895)
T ss_pred CCCcCC
Confidence 444554
No 98
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.67 E-value=2e+02 Score=34.74 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=20.6
Q ss_pred hhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHh
Q 007043 90 EKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKR 133 (620)
Q Consensus 90 E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a 133 (620)
.....+..++..+.....+-..+...+.+-...+..++..++..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~ 429 (908)
T COG0419 386 QLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEEL 429 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444445555554443
No 99
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.27 E-value=94 Score=37.55 Aligned_cols=95 Identities=24% Similarity=0.284 Sum_probs=66.0
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKF 163 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaes 163 (620)
.+.+|..++...+.|...|..+..-=-....-+.+...++.+|..+|+.++.|...+=.-|..++...+....-+.+.+.
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44444444444455555444444333334455677778888888888888888877777777777777777777888888
Q ss_pred hHHHHHHHHHhhhhh
Q 007043 164 EINSLREKLKKLESR 178 (620)
Q Consensus 164 EIasLkekv~~LE~~ 178 (620)
|+..|+.||.+||.+
T Consensus 674 E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 674 EAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899998888875
No 100
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.10 E-value=1.2e+02 Score=36.60 Aligned_cols=101 Identities=24% Similarity=0.281 Sum_probs=69.3
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK 300 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye 300 (620)
-+..|.++..++..||..|++.++.+----..|... +-+||...-.|.-.|.-.+++|-..+..+.
T Consensus 164 r~~kl~~~~qe~naeL~rarqreemneeh~~rlsdt----------vdErlqlhlkermaAle~kn~L~~e~~s~k---- 229 (916)
T KOG0249|consen 164 RTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDT----------VDERLQLHLKERMAALEDKNRLEQELESVK---- 229 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 467788899999999999999988764443333221 227777776777777777777777665554
Q ss_pred HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhh
Q 007043 301 LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKE 335 (620)
Q Consensus 301 ~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE 335 (620)
..|++++|+.+.|.+-.++|+.+.+--...-..++
T Consensus 230 k~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 230 KQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 44566778888888888888877766553333333
No 101
>PRK10698 phage shock protein PspA; Provisional
Probab=73.99 E-value=1.1e+02 Score=31.28 Aligned_cols=161 Identities=21% Similarity=0.240 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhh---------h-hhhhHHHHHHHH
Q 007043 5 MRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYT---------M-NETLSKELKVKE 74 (620)
Q Consensus 5 l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~---------e-~~~l~~EL~i~e 74 (620)
+..++++|.+++..++..--.+-++-..+..+...++.-..+-.-||.++.-.--.. + ...|..++....
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~ 112 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVD 112 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888877777777777788888888877777777776664321000 0 012334444444
Q ss_pred HhhHHhhH---HHHHHHHhhhhhHHHHhhhHHHhhhh-----------HHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhh
Q 007043 75 KNIESLKK---EWEIKLVEKDASLDELKGTLSNAKSS-----------EAHAMSLYSESKKKLQELELEVEKRKESEKKM 140 (620)
Q Consensus 75 ~~i~~LK~---~~E~kl~E~e~~ie~L~~el~~Ak~a-----------es~a~~l~~EwK~Kv~~LE~ele~a~esE~~~ 140 (620)
..+..|+. .++.++.+...--..|..-...|+.- -..+..-|+....||..+|.+.+..... .
T Consensus 113 ~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~---~ 189 (222)
T PRK10698 113 ETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFG---K 189 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhcc---C
Confidence 44555554 34444444444444443333333221 1234456667788888888888875431 2
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 007043 141 FDSFAAQTKQLEQTMIVFEESKFEINSLREKL 172 (620)
Q Consensus 141 ~eSL~sqtKqLE~tk~lLeeaesEIasLkekv 172 (620)
..||...-.+|+.. ..-..|++.|+.++
T Consensus 190 ~~~l~~e~~~le~~----~~ve~ELa~LK~~~ 217 (222)
T PRK10698 190 QKSLDQQFAELKAD----DEISEQLAALKAKM 217 (222)
T ss_pred CCCHHHHHHHhhcc----chHHHHHHHHHHHh
Confidence 35677776666542 13466777777664
No 102
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.56 E-value=94 Score=32.20 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKE 135 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~e 135 (620)
.++.++.+....|..|..+... ...-+..|+.++..-...+.+++.
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~-------ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESER-------KEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776655432 223566788776666665555554
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.28 E-value=36 Score=34.65 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKES 136 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~es 136 (620)
+=.+|..++..+..|+.+|+++. .+|..+..+|...+..++..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~----------~~~~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID----------NTWNQRTAEMQQKVAQSDSV 133 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777776644 45888888888877775553
No 104
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=72.23 E-value=1.2e+02 Score=31.20 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Q 007043 224 SLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQL 303 (620)
Q Consensus 224 ~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mL 303 (620)
.+.....+++.-+......-+|+||+-+...-.........+-++..-...+.+++-++..+......+..++..|...|
T Consensus 116 ~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l 195 (258)
T cd07655 116 EAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKAL 195 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666777788887777655444333333333322445578899999999999999999999999998
Q ss_pred HHhh
Q 007043 304 DELK 307 (620)
Q Consensus 304 DEa~ 307 (620)
..++
T Consensus 196 ~~~n 199 (258)
T cd07655 196 EDLN 199 (258)
T ss_pred HHHH
Confidence 8754
No 105
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.98 E-value=1.6e+02 Score=32.26 Aligned_cols=92 Identities=33% Similarity=0.398 Sum_probs=55.9
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHH
Q 007043 278 LEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHE 357 (620)
Q Consensus 278 lE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~ 357 (620)
||.++.++..|.--+++.-+-- .|+.-|.|.|++.|+||-.|.--. -++.+..+|| |
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEk----eEl~~ERD~yk~K~~RLN~ELn~~---L~g~~~rivD--------I-------- 191 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEK----EELVTERDAYKCKAHRLNHELNYI---LNGDENRIVD--------I-------- 191 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCccc--------H--------
Confidence 5666666666655554443222 246678999999999997776322 2344433322 1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhH
Q 007043 358 AMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDAL 412 (620)
Q Consensus 358 rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L 412 (620)
.++=.||--|++.|+++.+|.+-++-++. +.|-.|
T Consensus 192 -------------DaLi~ENRyL~erl~q~qeE~~l~k~~i~-------KYK~~l 226 (319)
T PF09789_consen 192 -------------DALIMENRYLKERLKQLQEEKELLKQTIN-------KYKSAL 226 (319)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 23335566778888888888776665555 666654
No 106
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.95 E-value=3e+02 Score=35.41 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=27.9
Q ss_pred HHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHh
Q 007043 229 VRFLKNELKLVTGAEENNQKALDDLALALKEVA 261 (620)
Q Consensus 229 k~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS 261 (620)
-+.|..+-+.|+..-+..+++|++...||.+..
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999988887643
No 107
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.80 E-value=2.1e+02 Score=33.66 Aligned_cols=204 Identities=20% Similarity=0.186 Sum_probs=115.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh-hhh--------hcccCcccchhhHHHHHHHHHHHHHHHHhhhhhh
Q 007043 145 AAQTKQLEQTMIVFEESKFEINSLREKLKKLESR-DLN--------ASQSGLAGTNETVEFLNSELQLAKDKLAISEKNE 215 (620)
Q Consensus 145 ~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~-~~~--------~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nE 215 (620)
...++-|++.+.-+++.++||..|+.++..|-.- ..| ....+.-.+..+|..+.+++...... .++.
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~----vw~~ 365 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKE----VWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhH
Confidence 3445667777788888888888888888877543 111 11222344555666666666554322 3333
Q ss_pred hh----HHHHHhhHHHHHHHHHHHHhHh-----H--------------HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 007043 216 KE----SLLKVRSLLEEVRFLKNELKLV-----T--------------GAEENNQKALDDLALALKEVALEASQAKEKLT 272 (620)
Q Consensus 216 k~----ass~i~~L~EEk~~L~~EL~~a-----~--------------~eEEKsKKAMEdLA~AL~EVS~EAreaKekll 272 (620)
+. .--+++.+.-+.+.|+..|... + +--..++.+.. .-+.+.+.+..++...+.
T Consensus 366 ~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~---el~~ei~~~~~~~~~~~~ 442 (581)
T KOG0995|consen 366 KLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLK---ELLDEISEELHEAENELE 442 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 22 1225666777777777777665 1 11123333333 346677888888888888
Q ss_pred hhHHHHHHHHhhHHHHHHHHHh-------hHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhh
Q 007043 273 STEAELEVKKAESEELKLKLKN-------IEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRA 345 (620)
Q Consensus 273 ~~Q~ElE~a~aqie~Lk~~Lk~-------teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~s 345 (620)
.-|.-+.+-..-|++++-.+.. ++.+|+..-.++..+-.--+.-++.|..+... =.+.+-..++.+
T Consensus 443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~-------l~l~~~~~m~~a 515 (581)
T KOG0995|consen 443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLN-------LKLVLNTSMKEA 515 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 8888888887777777665544 44444444444433322222223333222222 223344556666
Q ss_pred HHHHhhHHHHHHHHHHH
Q 007043 346 EEERDGAQQEHEAMLES 362 (620)
Q Consensus 346 EEE~~s~~~E~~rL~es 362 (620)
++.+-+++-+.++++..
T Consensus 516 ~~~v~s~e~el~~~~~~ 532 (581)
T KOG0995|consen 516 EELVKSIELELDRMVAT 532 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666554
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.08 E-value=1e+02 Score=29.62 Aligned_cols=15 Identities=47% Similarity=0.565 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHhhhh
Q 007043 163 FEINSLREKLKKLES 177 (620)
Q Consensus 163 sEIasLkekv~~LE~ 177 (620)
-+|.+|..++..||.
T Consensus 35 ~EI~sL~~K~~~lE~ 49 (143)
T PF12718_consen 35 QEITSLQKKNQQLEE 49 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555543
No 109
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=71.01 E-value=1.2e+02 Score=30.54 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHH
Q 007043 372 AAKEETLKLRDILKQAINEANVAKEASGIA---RAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLS 448 (620)
Q Consensus 372 ~~~eE~~kLrd~LKqa~~Ean~a~Eale~A---kaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ 448 (620)
.+..||.+|.+-|+.|..|...++.-+..- +.--..+|..+..-+..|..+..|++-|..+=..-..--++|+.-..
T Consensus 52 ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 52 EISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554444444333322 22222556666666777777777777776554444444555555444
Q ss_pred hh
Q 007043 449 ES 450 (620)
Q Consensus 449 ea 450 (620)
.+
T Consensus 132 ~~ 133 (201)
T PF13851_consen 132 SA 133 (201)
T ss_pred HH
Confidence 33
No 110
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=69.84 E-value=2.4e+02 Score=33.51 Aligned_cols=338 Identities=20% Similarity=0.208 Sum_probs=211.9
Q ss_pred HhhHHHHHH-HHHHHHHHHHHHhh-------hhHHhhhhhHHHHHHHHHh---------hhhhhhhhhhhHHHHHHHHHh
Q 007043 112 AMSLYSESK-KKLQELELEVEKRK-------ESEKKMFDSFAAQTKQLEQ---------TMIVFEESKFEINSLREKLKK 174 (620)
Q Consensus 112 a~~l~~EwK-~Kv~~LE~ele~a~-------esE~~~~eSL~sqtKqLE~---------tk~lLeeaesEIasLkekv~~ 174 (620)
+......|+ -.++.|.++|++.. ..-..-=..|+..|+++.. .+-+|--.++||..|-..-..
T Consensus 5 ~~~~~~~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~ 84 (629)
T KOG0963|consen 5 VGSVTQYWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKF 84 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667786 46677777776321 1111222467777777654 345566677888777766555
Q ss_pred hhhh--hhh-----hcccC-----c-------ccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHH
Q 007043 175 LESR--DLN-----ASQSG-----L-------AGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNE 235 (620)
Q Consensus 175 LE~~--~~~-----~~~~e-----~-------~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~E 235 (620)
-|.. +.. +.|+- + .....+++.|+..++-++.+ +.+.++--..|..|-+...++...
T Consensus 85 aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~e----l~~~k~qq~~v~~l~e~l~k~~~~ 160 (629)
T KOG0963|consen 85 AEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNE----LADLKTQQVTVRNLKERLRKLEQL 160 (629)
T ss_pred hHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH----HhhhhhhHHHHHhHHHHHHHHHHH
Confidence 5544 211 11211 0 11123566677777666655 345566666788888777777777
Q ss_pred HhHhHH--HHHhhhh-------hHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH----HHhhHHHHHHH
Q 007043 236 LKLVTG--AEENNQK-------ALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLK----LKNIEDSHKLQ 302 (620)
Q Consensus 236 L~~a~~--eEEKsKK-------AMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~----Lk~teekye~m 302 (620)
+..... +..+-++ =+.+|-.-...+....+++..+....|.-++.++.+..+++.. ...-.+-|-.+
T Consensus 161 ~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~li 240 (629)
T KOG0963|consen 161 LEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLI 240 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence 666554 2233333 3556666667778888888889999999999999998888876 33333444444
Q ss_pred ---HHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHh------hhhHHHHH---------HhhHHHHhhHHHHHHHHHHHHH
Q 007043 303 ---LDELKKEADLYRNTADRLTLEAEESLLAWNEK------ETRFVDCI---------KRAEEERDGAQQEHEAMLESLK 364 (620)
Q Consensus 303 ---LDEa~~E~~~lk~tverl~~Ea~~s~~eW~~K------E~~fV~ci---------K~sEEE~~s~~~E~~rL~esl~ 364 (620)
|+.|++=|.-|-.-++.|+.........-... =.+||-|- .-.+-.-.+...++.....-+.
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~ 320 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQIS 320 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777777777777776655443222211 12333333 2233344566677777777777
Q ss_pred HHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHhHH-----HHhh---hhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 365 EAENTTRAAKEETLKLRDILK------QAINEANVAKEASGIA-----RAEN---ARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 365 ~aE~e~~~~~eE~~kLrd~LK------qa~~Ean~a~Eale~A-----kaEn---~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
.-|.++.+.+.+...|+..|+ ..-.|.+.++ +.+.+ -+++ .-|--.|++|+.-|| .||-.||
T Consensus 321 ~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk-~ief~~se~a~~~~~~~~~leslLl~knr~lq---~e~a~Lr 396 (629)
T KOG0963|consen 321 ALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK-AIEFGDSEEANDEDETAKTLESLLLEKNRKLQ---NENASLR 396 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH-HhhcCCcccccccccccchHHHHHHHHHhhhh---HHHHHHh
Confidence 888888888888888888885 3444555555 33443 3443 356667889988776 5889999
Q ss_pred hhhhhhHHhHHHHHHHHHhhhhcccch
Q 007043 431 MNEAANIESMKELKKLLSESSSKESKL 457 (620)
Q Consensus 431 ~~EaaA~ekikELs~lL~ea~~k~~~~ 457 (620)
+.=+.....|.++++-.++...+....
T Consensus 397 ~~n~~~~~~~~~~~~~~~el~~~~~~~ 423 (629)
T KOG0963|consen 397 VANSGLSGRITELSKKGEELEAKATEQ 423 (629)
T ss_pred ccccccchhHHHHHhhhhhhHHHHHHH
Confidence 988888888888888888777665443
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.60 E-value=1.5e+02 Score=31.12 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=10.7
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhh
Q 007043 273 STEAELEVKKAESEELKLKLKNI 295 (620)
Q Consensus 273 ~~Q~ElE~a~aqie~Lk~~Lk~t 295 (620)
..+..|..+++++++++-.+-++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~ 50 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEAL 50 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 112
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.53 E-value=1.3e+02 Score=31.18 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007043 317 ADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKE 396 (620)
Q Consensus 317 verl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~E 396 (620)
.+++..+.-.....|+..+. ||.....|+..+..|-...++-|+ -+.++...|-.+++++..|-+.
T Consensus 13 lek~k~~i~~e~~~~e~ee~----~L~e~~kE~~~L~~Er~~h~eeLr-------qI~~DIn~lE~iIkqa~~er~~--- 78 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEK----CLEEYRKEMEELLQERMAHVEELR-------QINQDINTLENIIKQAESERNK--- 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---
Confidence 56666666666777777774 444455566667777777766653 3444444566666666555554
Q ss_pred HHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 397 ASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 397 ale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
.++.+.-+..++.-+..+.+.+|
T Consensus 79 -----------~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 79 -----------RQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555554
No 113
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.25 E-value=27 Score=32.23 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=44.7
Q ss_pred hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007043 336 TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAIN 389 (620)
Q Consensus 336 ~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~ 389 (620)
..|.+.|..+|..+..+-.++..|-..+...-.++..++-||+.||+.|.+...
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888888888888888888888888888888888865543
No 114
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.84 E-value=49 Score=28.56 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=40.3
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEK 132 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~ 132 (620)
.++.+|+|++..|.+|..+-.+--..+-.-...+-..+.++..+|..+..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~ 51 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKE 51 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999888887777777777777777777755443
No 115
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=67.51 E-value=2.3e+02 Score=32.35 Aligned_cols=220 Identities=15% Similarity=0.176 Sum_probs=111.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHH--------HHHHHHH
Q 007043 188 AGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDD--------LALALKE 259 (620)
Q Consensus 188 ~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEd--------LA~AL~E 259 (620)
-+|.++|..|+..|+..+..- .|+.+. +.-.-.+-+.-+..+...+|++=-||+. |---=.-
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~-e~~q~~---------~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqR 363 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQG-EAPQSA---------LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQR 363 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCchhh---------HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999998888887654 222221 1223334455666777777777766654 3322222
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH---HhhhHHHHHHhh----HHHHHHHHHHHHHHHh
Q 007043 260 VALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLD---ELKKEADLYRNT----ADRLTLEAEESLLAWN 332 (620)
Q Consensus 260 VS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLD---Ea~~E~~~lk~t----verl~~Ea~~s~~eW~ 332 (620)
----.|+-|.||+.-. .-+-|.-..++-++-.+..+--|. -+|..++.|+.. |+.+..|.+-...-+-
T Consensus 364 ELekLreEKdrLLAEE-----TAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYS 438 (593)
T KOG4807|consen 364 ELEKLREEKDRLLAEE-----TAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYS 438 (593)
T ss_pred HHHHHHHHHHhhhhhh-----hhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234556666666431 112222222222222222222121 123344555443 5555566666666666
Q ss_pred HhhhhHHHHHHhhHHHHhhHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-hh
Q 007043 333 EKETRFVDCIKRAEEERDGAQ---QEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENA-RL 408 (620)
Q Consensus 333 ~KE~~fV~ciK~sEEE~~s~~---~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~-~L 408 (620)
+|=+.....++..|++...++ +|+..|.. ....-+..+..|..+||-.|-..=. --+...|..-.+ -|
T Consensus 439 QKCLEnahLaqalEaerqaLRqCQrEnQELna---HNQELnnRLaaEItrLRtlltgdGg-----GtGsplaqgkdayEL 510 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQCQRENQELNA---HNQELNNRLAAEITRLRTLLTGDGG-----GTGSPLAQGKDAYEL 510 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHhhHHHHHHHHHHHHhccCCC-----CCCCccccCcchhhH
Confidence 666666666666666665543 34433322 2223344555666666665521000 000111111111 23
Q ss_pred hHhHhhhHHHHHHHHHhhhhhh
Q 007043 409 QDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 409 Kd~L~dKEneLq~i~qEne~Lr 430 (620)
-=.|-=||+++|-++||+.+||
T Consensus 511 EVLLRVKEsEiQYLKqEissLk 532 (593)
T KOG4807|consen 511 EVLLRVKESEIQYLKQEISSLK 532 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3446679999999999999998
No 116
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.96 E-value=88 Score=31.87 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=38.0
Q ss_pred HHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007043 330 AWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDIL 384 (620)
Q Consensus 330 eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~L 384 (620)
.|.+.-.++-..+..++..++.+..+|.+|-+-+..+.+++..+..++..+++..
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 115 TWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666667777777888888887777777777777777777666654
No 117
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.95 E-value=3.6e+02 Score=34.02 Aligned_cols=304 Identities=18% Similarity=0.218 Sum_probs=139.7
Q ss_pred HHHHHHHHhhHHhhHHHHHHHHhhhhhHHHHhh--hHHHhhhhHHHH--hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 007043 68 KELKVKEKNIESLKKEWEIKLVEKDASLDELKG--TLSNAKSSEAHA--MSLYSESKKKLQELELEVEKRKESEKKMFDS 143 (620)
Q Consensus 68 ~EL~i~e~~i~~LK~~~E~kl~E~e~~ie~L~~--el~~Ak~aes~a--~~l~~EwK~Kv~~LE~ele~a~esE~~~~eS 143 (620)
+|-..+..-|.-|=+-+|++|-++|.--++|.. .|..-++.=-|+ +.-+.|--.++..|+.....+.+....+.+-
T Consensus 180 ~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~ 259 (1200)
T KOG0964|consen 180 EETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDA 259 (1200)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 555556666777777899999999988777764 444444444444 4555555666666666666666554444444
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 007043 144 FAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVR 223 (620)
Q Consensus 144 L~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~ 223 (620)
|..+--..+..+.-+-+-+..+..|+.-.+.+...--.... ..-.|.-.|.+|.-++.--.+ ..+.+.-..+
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k-~kt~lel~~kdlq~~i~~n~q-------~r~~~l~~l~ 331 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISK-KKTKLELKIKDLQDQITGNEQ-------QRNLALHVLQ 331 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHhhhhhh-------hhhhHHHHHH
Confidence 44333333333333333333333333322222111000000 000111122222222111111 1122222333
Q ss_pred hHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHH----------HHHhhHHHHHHHHH
Q 007043 224 SLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELE----------VKKAESEELKLKLK 293 (620)
Q Consensus 224 ~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE----------~a~aqie~Lk~~Lk 293 (620)
.+...+..-..||..-.-.-.... +=..-+..--+.+++.+--|+.+|...- --+.+|.+|+..+.
T Consensus 332 ~~~~ki~e~~~EL~~I~Pky~~l~----~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~ 407 (1200)
T KOG0964|consen 332 KVKDKIEEKKDELSKIEPKYNSLV----DEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN 407 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH----hHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333332211111110 1111222223344444555556654332 24678999999998
Q ss_pred hhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHH---HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007043 294 NIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFV---DCIKRAEEERDGAQQEHEAMLESLKEAENTT 370 (620)
Q Consensus 294 ~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV---~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~ 370 (620)
++.+.-..+-.| .+.++.+.+.-....+.=+.++= ..|-.+-.++.++.++.+.+..- .
T Consensus 408 ~~ke~e~~lq~e-----------~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~-------R 469 (1200)
T KOG0964|consen 408 DTKEQENILQKE-----------IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK-------R 469 (1200)
T ss_pred hhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 888776666554 45555555544433332222211 12223333344444444443333 3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007043 371 RAAKEETLKLRDILKQAINEANVAKEASGIA 401 (620)
Q Consensus 371 ~~~~eE~~kLrd~LKqa~~Ean~a~Eale~A 401 (620)
+.+|-|..+||..+-.....++.++..|..+
T Consensus 470 k~lWREE~~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 470 KELWREEKKLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777776655555555555444433
No 118
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=65.27 E-value=1.5e+02 Score=29.50 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=59.6
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHH
Q 007043 293 KNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAE 367 (620)
Q Consensus 293 k~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE 367 (620)
.-+.+-+++|-|=.|+|+..+++.++...-+.+-...-|+-||..+-.|+..+.|-..---.=+++|++++...|
T Consensus 69 a~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 69 AEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445578999999999999999999999999999999999999999999998754433333667777765544
No 119
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.10 E-value=2.7e+02 Score=32.38 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHh
Q 007043 375 EETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRE 425 (620)
Q Consensus 375 eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qE 425 (620)
+...+|.+.|..+..+...++..++....+...++..+..-++.+..+...
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666655555555555555555555666655555555444333
No 120
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.09 E-value=1.6e+02 Score=29.69 Aligned_cols=52 Identities=10% Similarity=0.154 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhh
Q 007043 4 YMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRK 55 (620)
Q Consensus 4 ~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k 55 (620)
.+..++++|.+++..|+..--.+.++-..+.++...+..-..+-.-||.++.
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~ 83 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR 83 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4566778888888888888888888888888888888888888777777664
No 121
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.78 E-value=2.1e+02 Score=31.00 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=58.1
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhh--hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhccc
Q 007043 108 SEAHAMSLYSESKKKLQELELEVEKRKESEKKM--FDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQS 185 (620)
Q Consensus 108 aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~--~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~ 185 (620)
+.......+.+-+.++...|.+|..=++...-. .+.+.-.+.+|.+.+..|..++.+...++.+....+.. ...
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~ 247 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGK----DAL 247 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----ccc
Confidence 333334445555555555555555433322111 01112223455555555666665555554443322211 000
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhH
Q 007043 186 GLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKL 238 (620)
Q Consensus 186 e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~ 238 (620)
........|..|+.+|..++...+.....=....-.|..+..++..|...|..
T Consensus 248 ~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 248 PEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 11122345566666666666655444222112233566666677666666643
No 122
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.65 E-value=2.2e+02 Score=30.44 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHH--
Q 007043 318 DRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLK-------EAENTTRAAKEETLKLRDILKQAI-- 388 (620)
Q Consensus 318 erl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~-------~aE~e~~~~~eE~~kLrd~LKqa~-- 388 (620)
.-.+.+++..--+|+.+ .+-+-....++....++.....|...+. ........+..+...|+.......
T Consensus 129 ~~aRl~aK~~WYeWR~~--ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~ 206 (325)
T PF08317_consen 129 TYARLEAKKMWYEWRMQ--LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC 206 (325)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33455677777888865 2222233344444455555444444433 333333333333333333322110
Q ss_pred --HHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHH
Q 007043 389 --NEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLL 447 (620)
Q Consensus 389 --~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL 447 (620)
.+.+.++..+.....+....+..+.+.+.+++.+....+.+...=......|.++.+.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333333333333344444444444444444444444433333344444444433
No 123
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.08 E-value=39 Score=31.51 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=46.4
Q ss_pred hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007043 336 TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQA 387 (620)
Q Consensus 336 ~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa 387 (620)
..+.+.+...|..+..+-.++..|-..+...-.++.+++-||..||+.|.+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888999999999999999999999999999999999999999998754
No 124
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.81 E-value=41 Score=33.18 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=47.4
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHH
Q 007043 344 RAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFIC 423 (620)
Q Consensus 344 ~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~ 423 (620)
..+.-+..++.|++.+--.-...-........+...++..+..-...+..+..-+.--+.+...|.+.|.+|...++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444333333333344445555556555554444444444444445666688889999999999999
Q ss_pred HhhhhhhhhhhhhHHhHHHHH----HHHHhhhhcccc
Q 007043 424 RENEDLKMNEAANIESMKELK----KLLSESSSKESK 456 (620)
Q Consensus 424 qEne~Lr~~EaaA~ekikELs----~lL~ea~~k~~~ 456 (620)
.|+..|++.=...-+++..|. .|+.--+.++..
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887677777777664 345444544443
No 125
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.64 E-value=3.2e+02 Score=32.12 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=50.3
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHH-HHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQ-ELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESK 162 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~-~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeae 162 (620)
+=.+|..++.-+.+|+++.---|-.. -.+.+|+.-.- .+..+|...|--=+.+.+-|.+-|++|-+-.--+-.-.
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et----~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLl 239 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTET----LTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLL 239 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776654433322 35778876554 77777777777666666666666666654333333333
Q ss_pred hhHHHHHHHH
Q 007043 163 FEINSLREKL 172 (620)
Q Consensus 163 sEIasLkekv 172 (620)
++|++|+.|+
T Consensus 240 sql~d~qkk~ 249 (596)
T KOG4360|consen 240 SQLVDLQKKI 249 (596)
T ss_pred HHHHhhHHHH
Confidence 4444444443
No 126
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=59.43 E-value=3.1e+02 Score=31.15 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=58.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHhHhHHHH-Hhhhhh-------HHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 007043 217 ESLLKVRSLLEEVRFLKNELKLVTGAE-ENNQKA-------LDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEEL 288 (620)
Q Consensus 217 ~ass~i~~L~EEk~~L~~EL~~a~~eE-EKsKKA-------MEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~L 288 (620)
...+.|++|.+.+..|+.+|......- .+.+.. |-..++|...+++-.....-..... .-..++..|
T Consensus 82 h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~Ev~~L 156 (424)
T PF03915_consen 82 HIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSK-----SDLKEVQSL 156 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCc-----chHHHHHHH
Confidence 344566777777777666665544333 121111 2233444443333222211111111 015566666
Q ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHH
Q 007043 289 KLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAEN 368 (620)
Q Consensus 289 k~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~ 368 (620)
+..|....--|.....+.+.-|.-++..+..+..- +...-.+-.+.+|+.-+. .+..+.++|+.-+.+-+.
T Consensus 157 RreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~---s~~~~~~~~R~~~~~~k~------~L~~~sd~Ll~kVdDLQD 227 (424)
T PF03915_consen 157 RRELAVLRQLYSEFQSEVKESISSIREKIKKVKSA---STNASGDSNRAYMESGKK------KLSEESDRLLTKVDDLQD 227 (424)
T ss_dssp ----------------------------------------------HHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccccchhHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 66666666667766666666666666666655441 111114467777765543 466677777777766666
Q ss_pred HHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHhHH----HHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHh
Q 007043 369 TTRAAKEETLKLR-----DILKQAINEANVAKEASGIA----RAENARLQDALHAKEEALNFICRENEDLKMNEAANIES 439 (620)
Q Consensus 369 e~~~~~eE~~kLr-----d~LKqa~~Ean~a~Eale~A----kaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ek 439 (620)
-...+|.+..+=+ ..|+....+...+.-.+... ..+.-.||-.. |.+|+.|++|-.-|..-|--..+=
T Consensus 228 ~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW---E~EL~~V~eEQqfL~~QedL~~DL 304 (424)
T PF03915_consen 228 LVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW---ESELQKVCEEQQFLKLQEDLLSDL 304 (424)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555543311 22233334444433333322 33444555544 789999999999999888543333
Q ss_pred HHHHHH
Q 007043 440 MKELKK 445 (620)
Q Consensus 440 ikELs~ 445 (620)
-++|.+
T Consensus 305 ~eDl~k 310 (424)
T PF03915_consen 305 KEDLKK 310 (424)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 127
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=58.49 E-value=2.7e+02 Score=30.23 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=68.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 007043 190 TNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKE 269 (620)
Q Consensus 190 lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKe 269 (620)
+..+|+.|+.+.....+. |..|..+......++--+-.+-+..+|=.|.+-.-+-+-+..+.+.++
T Consensus 163 l~aei~~lk~~~~e~~ek--------------i~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~e 228 (294)
T COG1340 163 LKAEIDELKKKAREIHEK--------------IQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHE 228 (294)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445566666555554332 666777777777777777777788888888888778888888888888
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHhhH
Q 007043 270 KLTSTEAELEVKKAESEELKLKLKNIE 296 (620)
Q Consensus 270 kll~~Q~ElE~a~aqie~Lk~~Lk~te 296 (620)
.+-..|.+|.-+...|-.|+....++.
T Consensus 229 e~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 229 EFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877777766664
No 128
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.90 E-value=1.9e+02 Score=28.15 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=44.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHH
Q 007043 187 LAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEV 260 (620)
Q Consensus 187 ~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EV 260 (620)
...++..|.+|..+|+.+..++..+...--++-.-|.+|-+++..+..+|.....+-...++=-+.|+--|++.
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888888777775443355555555555555555555555444444444445555555444
No 129
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.75 E-value=5.2e+02 Score=33.25 Aligned_cols=207 Identities=19% Similarity=0.160 Sum_probs=94.5
Q ss_pred hhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHH-------HHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhh
Q 007043 90 EKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQ-------ELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESK 162 (620)
Q Consensus 90 E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~-------~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeae 162 (620)
+++.....++.+.+++++-+-.. .++...++ .++..+.-...++...+.-..-+.-.++...-...+..
T Consensus 547 ~le~~~~d~~~e~~~~~kl~~~~----~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~ 622 (1317)
T KOG0612|consen 547 QLEEAELDMRAESEDAGKLRKHS----KELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEIS 622 (1317)
T ss_pred HHHHhhhhhhhhHHHHhhHhhhh----hhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554443332 23333333 34444444445555555555555555555555555566
Q ss_pred hhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHH
Q 007043 163 FEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGA 242 (620)
Q Consensus 163 sEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~e 242 (620)
-.++.|+..+.+|+.+-. + +..++..+.- +.....+ ..-++|+. +.. -.+.-++..+.++|+..+.+
T Consensus 623 e~~~~l~~~i~sL~~~~~-~-------~~~~l~k~~e-l~r~~~e--~~~~~ek~-~~e-~~~e~~lk~~q~~~eq~~~E 689 (1317)
T KOG0612|consen 623 EIIAELKEEISSLEETLK-A-------GKKELLKVEE-LKRENQE--RISDSEKE-ALE-IKLERKLKMLQNELEQENAE 689 (1317)
T ss_pred HHHHHHHhHHHHHHHHHH-h-------hhhHHHHHHH-HHHHHHH--HHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 667777777777764310 0 0111111111 1111111 11222332 111 12344555666666666555
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhh-------hHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHh
Q 007043 243 EENNQKALDDLALALKEVALEASQAKEKLTS-------TEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRN 315 (620)
Q Consensus 243 EEKsKKAMEdLA~AL~EVS~EAreaKekll~-------~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~ 315 (620)
...- -|+++ .....+.-.||.. .+.-+--..++.+-|+..++.++++.+-+.-..+-.+.-..+
T Consensus 690 ~~~~-----~L~~~----e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~ 760 (1317)
T KOG0612|consen 690 HHRL-----RLQDK----EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLK 760 (1317)
T ss_pred HHHH-----HHhhH----HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHH
Confidence 5444 34433 2333333333332 122222255677788888888887766655544444444444
Q ss_pred hHHHHHH
Q 007043 316 TADRLTL 322 (620)
Q Consensus 316 tverl~~ 322 (620)
-.-+|+.
T Consensus 761 Lq~~LEq 767 (1317)
T KOG0612|consen 761 LQSMLEQ 767 (1317)
T ss_pred HHHHHHH
Confidence 4444433
No 130
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=57.43 E-value=2.2e+02 Score=28.69 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 007043 223 RSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQ 302 (620)
Q Consensus 223 ~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~m 302 (620)
..+.++..+|..++..+...-+|+|+.-+.+.-...........+.........+++-++.....-...+..++..|...
T Consensus 108 K~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~ 187 (251)
T cd07653 108 KKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQ 187 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888877766555544443333333333344566777777777777777888999888
Q ss_pred HHHhhhH
Q 007043 303 LDELKKE 309 (620)
Q Consensus 303 LDEa~~E 309 (620)
+..+|..
T Consensus 188 l~~~N~~ 194 (251)
T cd07653 188 LQKFNKE 194 (251)
T ss_pred HHHHHHH
Confidence 8887644
No 131
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.09 E-value=2.8e+02 Score=29.95 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=6.8
Q ss_pred hhHHHHHHhhHHHH
Q 007043 307 KKEADLYRNTADRL 320 (620)
Q Consensus 307 ~~E~~~lk~tverl 320 (620)
++||..|+..+..|
T Consensus 270 ~~Ei~~Lk~~~~~L 283 (312)
T smart00787 270 FKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554444
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.85 E-value=3e+02 Score=30.18 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Q 007043 257 LKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLD 304 (620)
Q Consensus 257 L~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLD 304 (620)
+..+-+|-|-.|+++..+|.|...++ .+=.||..|||
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k-----------~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLK-----------QTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 45577899999999999999866544 44467777776
No 133
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=56.73 E-value=1.2e+02 Score=28.24 Aligned_cols=68 Identities=32% Similarity=0.378 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHh
Q 007043 375 EETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSE 449 (620)
Q Consensus 375 eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~e 449 (620)
.|-++||-- +.|++.|+=.-.+=+..|++.|-.||.+|--+.|||+.|-.+=--=-..|.-|..=|..
T Consensus 5 ~eYsKLraQ-------~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 5 QEYSKLRAQ-------NQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666644 56677777777777889999999999999999999999988766666667777766653
No 134
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.41 E-value=3.1e+02 Score=33.51 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhh----hhHHHHhhH
Q 007043 84 WEIKLVEKDASLDELKGTLSNAK----SSEAHAMSL 115 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak----~aes~a~~l 115 (620)
.++++--++..++.|+.+|..|+ |.+.++..+
T Consensus 161 ~eer~~kl~~~~qe~naeL~rarqreemneeh~~rl 196 (916)
T KOG0249|consen 161 IEERTRKLEEQLEELNAELQRARQREKMNEEHNKRL 196 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 56677777778888888887774 444455433
No 135
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=55.79 E-value=5e+02 Score=32.38 Aligned_cols=270 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhHHh
Q 007043 2 QQYMRTVED-TLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESL 80 (620)
Q Consensus 2 q~~l~~~qe-~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~e~~~l~~EL~i~e~~i~~L 80 (620)
+++++...+ ..--|+..+...+..-...-.+|.+.++.++++
T Consensus 342 ~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~------------------------------------- 384 (980)
T KOG0980|consen 342 VAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN------------------------------------- 384 (980)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------------------------------------
Q ss_pred hHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhh
Q 007043 81 KKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEE 160 (620)
Q Consensus 81 K~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLee 160 (620)
.+-.++|....+...--+.++.+|..--..+..-+.-|+++.+.|=.....-.+----++.-+...+|||+-+.-...+
T Consensus 385 -~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~ 463 (980)
T KOG0980|consen 385 -REEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDD 463 (980)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred hhhhHHHHHHHHHhhhhhhhh---hcccCcccchhhHHHHHHHHHHHHHHHHhhhhh-hhhHHH------HHhhHHHHHH
Q 007043 161 SKFEINSLREKLKKLESRDLN---ASQSGLAGTNETVEFLNSELQLAKDKLAISEKN-EKESLL------KVRSLLEEVR 230 (620)
Q Consensus 161 aesEIasLkekv~~LE~~~~~---~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~n-Ek~ass------~i~~L~EEk~ 230 (620)
.+-++..|-++|..+....-. +.. +....+++|+-+|.+.-.+..+..-+ ...+.+ ++..++.+|.
T Consensus 464 ~~~~~~~L~d~le~~~~~~~~~~~K~e----~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD 539 (980)
T KOG0980|consen 464 VEEENTNLNDQLEELQRAAGRAETKTE----SQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKD 539 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHhHhHH-HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHH------HhhHHHH--HHHHHhhHHHHHH
Q 007043 231 FLKNELKLVTG-AEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVK------KAESEEL--KLKLKNIEDSHKL 301 (620)
Q Consensus 231 ~L~~EL~~a~~-eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a------~aqie~L--k~~Lk~teekye~ 301 (620)
++..++..-.+ .+...++|-.+ ..|.+|++. .+|+.+. +..|...-..-..
T Consensus 540 ~~~~~~~~~~~e~~~~~~e~e~s--------------------i~ql~l~~~~~~ea~~tQ~~~~~~~~il~~~~~~~~q 599 (980)
T KOG0980|consen 540 RLAAELVAREEEREALRLEAERS--------------------INQLELDSSASTEAGITQLQDDLNDPILDGSLASGIQ 599 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------------------HHHhhcccccchHHHHHHHHHHhccHHHHHHHHHHHH
Q ss_pred HHHHhhhHHH------------HHHhhHHHHHHHHHHHHHHHhH
Q 007043 302 QLDELKKEAD------------LYRNTADRLTLEAEESLLAWNE 333 (620)
Q Consensus 302 mLDEa~~E~~------------~lk~tverl~~Ea~~s~~eW~~ 333 (620)
.|+++-|..+ -|-.|++..-.-+......|+.
T Consensus 600 ~lq~al~~ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~ 643 (980)
T KOG0980|consen 600 ALQNALYQLDSPLHWRCLTSPDFLLSTAENASVNATQFETSFNN 643 (980)
T ss_pred HHHHHHHhcCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHhh
No 136
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=55.03 E-value=3.2e+02 Score=31.15 Aligned_cols=173 Identities=12% Similarity=0.144 Sum_probs=95.6
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhh
Q 007043 103 SNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNA 182 (620)
Q Consensus 103 ~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~ 182 (620)
-++..|..-+..++.+.-..|-.| +.+..-|.+.....+++.+..-|.++...+...+.+.+-+-.. +
T Consensus 212 F~PedA~~ia~aLL~~sE~~VN~L---------s~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~---~ 279 (434)
T PRK15178 212 RSAKQAEFFAQRILSFAEQHVNTV---------SARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPK---E 279 (434)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChH---H
Confidence 344455555555555555544443 3344457788888888888888888888888888876555321 0
Q ss_pred cccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHH--hhhhhHHHHHHHHHHH
Q 007043 183 SQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEE--NNQKALDDLALALKEV 260 (620)
Q Consensus 183 ~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEE--KsKKAMEdLA~AL~EV 260 (620)
.+...-..|-.|..+|-..+-+......+=...+.+|..|..++..|...+..-+..-= ..-..+-++++--...
T Consensus 280 ---~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L 356 (434)
T PRK15178 280 ---TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDL 356 (434)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 01122234444444444444433322221111223455555555555444432111110 0001223344444778
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Q 007043 261 ALEASQAKEKLTSTEAELEVKKAESEELKL 290 (620)
Q Consensus 261 S~EAreaKekll~~Q~ElE~a~aqie~Lk~ 290 (620)
..+..=|...|..+..-+|.|+.++.+-..
T Consensus 357 ~le~efAe~~y~sAlaaLE~AR~EA~RQ~~ 386 (434)
T PRK15178 357 RLQSEIAKARWESALQTLQQGKLQALRERQ 386 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888888899999999999999988876443
No 137
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.01 E-value=2.4e+02 Score=28.51 Aligned_cols=27 Identities=37% Similarity=0.361 Sum_probs=13.7
Q ss_pred hhhhhhhHHHHHhhHHHHHHHHHHHHh
Q 007043 211 SEKNEKESLLKVRSLLEEVRFLKNELK 237 (620)
Q Consensus 211 Al~nEk~ass~i~~L~EEk~~L~~EL~ 237 (620)
..+.+....-.+.....++.++..+|.
T Consensus 80 ~q~~~r~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 80 SQEQERELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555544
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.90 E-value=95 Score=30.66 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=29.1
Q ss_pred HHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhH
Q 007043 342 IKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDAL 412 (620)
Q Consensus 342 iK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L 412 (620)
|...+.++..++.++..|-..+++...-+..++||..-|+ -+.|++.+-+.-...||..|=+.+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~-------l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ-------LQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433333333333332 344555555555555555554444
No 139
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=54.63 E-value=2.7e+02 Score=29.00 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=71.6
Q ss_pred HHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHH--hhhHHHHHHHHhhHHHHHHHHHhhHH
Q 007043 220 LKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKL--TSTEAELEVKKAESEELKLKLKNIED 297 (620)
Q Consensus 220 s~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekl--l~~Q~ElE~a~aqie~Lk~~Lk~tee 297 (620)
..++..+.|..+|.+=.+.+-...-|.-...-.+-.-|+- -+....+| ...++-+-.+..++.+|......++.
T Consensus 105 ~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~k----Kr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~ 180 (234)
T cd07665 105 FLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQK----KREAEARLLWANKPDKLQQAKDEIAEWESRVTQYER 180 (234)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999988888887776666655554433 34455565 34567788889999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHh
Q 007043 298 SHKLQLDELKKEADLYRN 315 (620)
Q Consensus 298 kye~mLDEa~~E~~~lk~ 315 (620)
.|+.|.+-.+.|++.+..
T Consensus 181 ~fe~is~~ik~El~rFe~ 198 (234)
T cd07665 181 DFERISATVRKEVIRFEK 198 (234)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988888877654
No 140
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.55 E-value=2.5e+02 Score=28.31 Aligned_cols=135 Identities=21% Similarity=0.265 Sum_probs=78.0
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
+.+-+.-|..|+.++..-+.-++..+|-|.+++.--...+.-...+......-+..+ .+.+..+.+|.++..+|..
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L----~~y~kdK~~L~~~k~rl~~ 97 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL----KNYEKDKQSLQNLKARLKE 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 444567788888888888889999999887776655555555555554444333333 3455677888888888765
Q ss_pred H---HHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHH
Q 007043 302 Q---LDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESL 363 (620)
Q Consensus 302 m---LDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl 363 (620)
+ |...+.|-+.|.-.+.++..|-++...-.+ ..+.+.-.++.--+..+..-+.-|.+.|
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~---~~i~evqQk~~~kn~lLEkKl~~l~~~l 159 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE---SAIQEVQQKTGLKNLLLEKKLQALSEQL 159 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 334445555555555555555443332221 2233333444444444444444444443
No 141
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.53 E-value=5.7e+02 Score=32.42 Aligned_cols=113 Identities=27% Similarity=0.328 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhHHhhHHHHHH----------HHhhhhhHHHHhhh----HHHhhhhHHHHhhH------HHHH----HH
Q 007043 66 LSKELKVKEKNIESLKKEWEIK----------LVEKDASLDELKGT----LSNAKSSEAHAMSL------YSES----KK 121 (620)
Q Consensus 66 l~~EL~i~e~~i~~LK~~~E~k----------l~E~e~~ie~L~~e----l~~Ak~aes~a~~l------~~Ew----K~ 121 (620)
|.-+|-.++..|..|..++|+| |-.+++-|+.|+-+ +..|+.|..|+..+ +..| |.
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 3355566777777777755544 33334444444443 23456666665332 2223 33
Q ss_pred HHHHH---HHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhh--hhhhhhHHHHHHHHHhhhhh
Q 007043 122 KLQEL---ELEVEKRKESEKKMFDSFAAQTKQLEQTMIVF--EESKFEINSLREKLKKLESR 178 (620)
Q Consensus 122 Kv~~L---E~ele~a~esE~~~~eSL~sqtKqLE~tk~lL--eeaesEIasLkekv~~LE~~ 178 (620)
++..+ =.+|++.++-.+-.+++..+.-.||..+..-= ..-+++|-.|+.++..+...
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~e 316 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSE 316 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHh
Confidence 33333 33566666666666677777777777665544 45567777777777777653
No 142
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.30 E-value=4.7e+02 Score=31.34 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=51.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHh--HhHHHHH---hhhhhHHHHHHHHHHHhHH
Q 007043 189 GTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELK--LVTGAEE---NNQKALDDLALALKEVALE 263 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~--~a~~eEE---KsKKAMEdLA~AL~EVS~E 263 (620)
.+|..+..+...+........++-.........+..+..+...+...+. ....... -.-|.++.+..-+.....+
T Consensus 111 ~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 190 (670)
T KOG0239|consen 111 ELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLESDLGDLVTE 190 (670)
T ss_pred ccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444555555555555555544433333333333333333333322222 1111111 3345555556666666666
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Q 007043 264 ASQAKEKLTSTEAELEVKKAESEELKLKLK 293 (620)
Q Consensus 264 AreaKekll~~Q~ElE~a~aqie~Lk~~Lk 293 (620)
...++.........++.+..+...|...+.
T Consensus 191 l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 191 LEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 666666666666666665555555555443
No 143
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=53.23 E-value=2.8e+02 Score=28.76 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=60.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhH
Q 007043 217 ESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIE 296 (620)
Q Consensus 217 ~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~te 296 (620)
.+-|++..|.++..-+.+.|++-...+++----.|..=--|+.+|.-.+++--+--...--.-.-..++++|--.+.++.
T Consensus 106 ~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 106 AAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 56678999999999999999988777666555555555555666655555433322222222333457889999999999
Q ss_pred HHHHHHHHH
Q 007043 297 DSHKLQLDE 305 (620)
Q Consensus 297 ekye~mLDE 305 (620)
++|..|-++
T Consensus 186 ~ky~~~~~e 194 (205)
T KOG1003|consen 186 EKYEEAKKE 194 (205)
T ss_pred HHHHHHHHH
Confidence 999887665
No 144
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.22 E-value=1.4e+02 Score=25.66 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=32.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHH
Q 007043 345 AEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICR 424 (620)
Q Consensus 345 sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~q 424 (620)
.|-++++++.-++++..-+..-+...+.++.|+.. +--.++.|..++.+||+- +..+.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~--------------~~~~l~~a~~e~~~Lk~E-------~e~L~~ 61 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDS--------------AERQLGDAYEENNKLKEE-------NEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 45566666666666655544444433433333322 223445566666666665 344455
Q ss_pred hhhhhh
Q 007043 425 ENEDLK 430 (620)
Q Consensus 425 Ene~Lr 430 (620)
|++.+|
T Consensus 62 el~~~r 67 (69)
T PF14197_consen 62 ELEELR 67 (69)
T ss_pred HHHHhh
Confidence 554443
No 145
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=53.12 E-value=5.1e+02 Score=31.68 Aligned_cols=113 Identities=25% Similarity=0.348 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhhHHHHHHH---------
Q 007043 7 TVEDTLKMTKDRLDAAEKERD----RALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVK--------- 73 (620)
Q Consensus 7 ~~qe~Lkkakeql~~~e~Ek~----r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~e~~~l~~EL~i~--------- 73 (620)
-++++|-+.|+|+..+..=.. -+|+|- ..|.-+|.|-.|.+|.-+-.--.-. +.|+.|+-.+
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~--IeKLk~E~d~e~S~A~~~~gLk~kL---~~Lr~E~sKa~~~~~~~~~ 507 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEM--IEKLKKEIDLEYTEAVIAMGLQERL---ENLREEFSKANSQDQLMHP 507 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHH--HHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHhcccccccccH
Confidence 467888999999988853223 344443 3577888998888885432211110 1222233211
Q ss_pred -H-HhhHHhhHHHHHHHHh------hhhhHHHHhhhHHHhhhhHH---HHhhHHHHHHHHHHH
Q 007043 74 -E-KNIESLKKEWEIKLVE------KDASLDELKGTLSNAKSSEA---HAMSLYSESKKKLQE 125 (620)
Q Consensus 74 -e-~~i~~LK~~~E~kl~E------~e~~ie~L~~el~~Ak~aes---~a~~l~~EwK~Kv~~ 125 (620)
. ..|+.||.++-.+|.+ +-.-++-|+... .||..-+ .+..|=++.++|+-+
T Consensus 508 ~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s~g~~~a~~Lk~ei~kki~e 569 (762)
T PLN03229 508 VLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALSEKKSKAEKLKAEINKKFKE 569 (762)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-HhhhhcccchhhhhhhHHHHHHHHH
Confidence 1 1299999999999986 555566677666 3333322 366677777777766
No 146
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=52.30 E-value=3.1e+02 Score=29.47 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=50.7
Q ss_pred HHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007043 323 EAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIA 401 (620)
Q Consensus 323 Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~A 401 (620)
++......|+..+...=.|-|. +...+.|+..+.+-|+.+|.+.+.+++-....+..|-++..+-..+...+..+
T Consensus 180 Ea~e~~~~~~~~e~eke~~~r~----l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 180 EAKEIYDQHETREEEKEEKDRK----LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677776666555555 55677888889999999998888777777777777655555555444444433
No 147
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.00 E-value=2.3e+02 Score=27.36 Aligned_cols=96 Identities=26% Similarity=0.307 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhh
Q 007043 352 AQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKM 431 (620)
Q Consensus 352 ~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~ 431 (620)
+..|++.+-+.+.+........++....++.-++........+.+.......+...|...+.+-...++....+...++.
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 172 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQE 172 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445544445555555555555555555555555555555555555555555544
Q ss_pred hhhhhHHhHHHHHHHH
Q 007043 432 NEAANIESMKELKKLL 447 (620)
Q Consensus 432 ~EaaA~ekikELs~lL 447 (620)
.=..-...+.+++.++
T Consensus 173 ~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 173 NLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4344444444444443
No 148
>PRK11281 hypothetical protein; Provisional
Probab=51.95 E-value=6.1e+02 Score=32.26 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=22.1
Q ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Q 007043 257 LKEVALEASQAKEKLTSTEAELEVKKAESEELKLKL 292 (620)
Q Consensus 257 L~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~L 292 (620)
+..++.+-.+++.++.....-..+-+.||+=|+.++
T Consensus 301 ~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~ 336 (1113)
T PRK11281 301 LNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSL 336 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 445556666666666666655666666666666544
No 149
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.59 E-value=2.2e+02 Score=27.23 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=26.0
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhhhhhhHH
Q 007043 138 KKMFDSFAAQTKQLEQTMIVFEESKFEIN 166 (620)
Q Consensus 138 ~~~~eSL~sqtKqLE~tk~lLeeaesEIa 166 (620)
+.|.+...+++|||++....|..++-++.
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999998865
No 150
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=51.04 E-value=2.2e+02 Score=31.45 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=51.3
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhH
Q 007043 214 NEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTE 275 (620)
Q Consensus 214 nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q 275 (620)
-||.-+.+++.+..+...++.+|..++..-.-.-..+..++-.|.++|.+..++|...-..-
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36677778999999999999999999988888888888888889888888888877665543
No 151
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.35 E-value=4e+02 Score=29.43 Aligned_cols=130 Identities=20% Similarity=0.265 Sum_probs=74.1
Q ss_pred HhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHH
Q 007043 89 VEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSL 168 (620)
Q Consensus 89 ~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasL 168 (620)
.|.|.+.-+||+-+... ..+|...++.. ++...... ..+..++..|.--..+|..-
T Consensus 198 lEvERV~PqLKv~~~~d----------~kDWR~hleqm-------~~~~~~I~-------~~~~~~~~~L~kl~~~i~~~ 253 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRAD----------AKDWRSHLEQM-------KQHKKSIE-------SALPETKSQLDKLQQDISKT 253 (359)
T ss_pred HHHHHHhhhheeeccCC----------cchHHHHHHHH-------HHHHHHHH-------HhhhHHHHHHHHHHHHHHHH
Confidence 46677777887655432 27888755433 33332222 33444444455566667776
Q ss_pred HHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhh
Q 007043 169 REKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQK 248 (620)
Q Consensus 169 kekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKK 248 (620)
-++|.+-|.. +...++.|..+.+.+....+.+..-=+.++..|..++.+.+.|..+|+ +.|.
T Consensus 254 lekI~sREk~-----------iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe-------~vK~ 315 (359)
T PF10498_consen 254 LEKIESREKY-----------INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE-------QVKQ 315 (359)
T ss_pred HHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHH
Confidence 7777777652 223345555555566555555555555566667777777777766665 4555
Q ss_pred hHHHHHHHHHHH
Q 007043 249 ALDDLALALKEV 260 (620)
Q Consensus 249 AMEdLA~AL~EV 260 (620)
-|++-.+.+..-
T Consensus 316 emeerg~~mtD~ 327 (359)
T PF10498_consen 316 EMEERGSSMTDG 327 (359)
T ss_pred HHHHhcCCCCCC
Confidence 566655544443
No 152
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.57 E-value=6.8e+02 Score=31.82 Aligned_cols=201 Identities=19% Similarity=0.254 Sum_probs=102.9
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhH-HhhhhhHHHHHHHHHhhhhhhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESE-KKMFDSFAAQTKQLEQTMIVFEESK 162 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE-~~~~eSL~sqtKqLE~tk~lLeeae 162 (620)
++.++-....-++.|..+|..-+..-..-+.+-++|-.+.+.|-.=.....+++ ...++-+...-..++.+..-+.+..
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~ 761 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKE 761 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555566666655555555557788888766665544333333322 2333334444444444333333333
Q ss_pred hhHHHHHHHHHhhhhh-hhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHH
Q 007043 163 FEINSLREKLKKLESR-DLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTG 241 (620)
Q Consensus 163 sEIasLkekv~~LE~~-~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~ 241 (620)
-=+-.-.++|..||.. .--. ......+..|..++...+....+.-+. ...-..+...|.-|.+.-..
T Consensus 762 ~~~k~~~~~i~~lE~~~~d~~-----~~re~rlkdl~keik~~k~~~e~~~~~-------~ek~~~e~e~l~lE~e~l~~ 829 (1174)
T KOG0933|consen 762 RALKKCEDKISTLEKKMKDAK-----ANRERRLKDLEKEIKTAKQRAEESSKE-------LEKRENEYERLQLEHEELEK 829 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHhh-----hhhHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555543 0001 112344555555555554432222221 12222344444444444444
Q ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhH
Q 007043 242 AEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIE 296 (620)
Q Consensus 242 eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~te 296 (620)
+-...+.-|..+-..++...++.-..+.++...+.++..+.+++.+.+..+...+
T Consensus 830 e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d 884 (1174)
T KOG0933|consen 830 EISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID 884 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 4445555555555566666666666777777888888888888888877776554
No 153
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=47.95 E-value=3.6e+02 Score=28.48 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=11.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHH
Q 007043 268 KEKLTSTEAELEVKKAESEELKLKLK 293 (620)
Q Consensus 268 Kekll~~Q~ElE~a~aqie~Lk~~Lk 293 (620)
+..|...+.++..+++++..++..+.
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 154
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.83 E-value=6.6e+02 Score=31.21 Aligned_cols=58 Identities=22% Similarity=0.227 Sum_probs=35.0
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhh
Q 007043 228 EVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNI 295 (620)
Q Consensus 228 Ek~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~t 295 (620)
+.+.-..+|+.++...+-.+++..|-+.. ++.|-+ ++-.+++..+.|..+||.-+..-
T Consensus 525 ~~~~~~s~L~aa~~~ke~irq~ikdqlde---lskE~e-------sk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 525 ETTQRKSELEAARRKKELIRQAIKDQLDE---LSKETE-------SKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHhhhhHHHHHHHHHHHHHHH
Confidence 44445677888888888788877775443 343322 22235666777777777665443
No 155
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.54 E-value=3.7e+02 Score=28.18 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHh----HhHHHHHhhhhhHHHHHHHHHHHhHHHH
Q 007043 190 TNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELK----LVTGAEENNQKALDDLALALKEVALEAS 265 (620)
Q Consensus 190 lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~----~a~~eEEKsKKAMEdLA~AL~EVS~EAr 265 (620)
+....+.++.+++.+-..+ ...+. ++..+.+++..+..+.. ..++.+....+|.--++..+ ....
T Consensus 65 ~~~~~~~~~~e~e~~a~~H------~~la~-~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~----~~~~ 133 (269)
T cd07673 65 FAPVWDVFKTSTEKLANCH------LELVR-KLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSIT----QALQ 133 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH----HHHH
Confidence 4555666666666553322 22221 22334455555554443 22333445555554444433 3334
Q ss_pred HHHHHHhhhHHHHHHH------HhhHHHHHHHHHhhHHHHHHHHHH
Q 007043 266 QAKEKLTSTEAELEVK------KAESEELKLKLKNIEDSHKLQLDE 305 (620)
Q Consensus 266 eaKekll~~Q~ElE~a------~aqie~Lk~~Lk~teekye~mLDE 305 (620)
-+|.+|-..=-+.+++ +.+++-++..++.+.+.|+..++.
T Consensus 134 KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~ 179 (269)
T cd07673 134 KSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEK 179 (269)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666555455544 466777777777777777777654
No 156
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.39 E-value=4.5e+02 Score=29.13 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHh-hhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh-h-hhh-----cc
Q 007043 113 MSLYSESKKKLQELELEVEKRKESEKK-MFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESR-D-LNA-----SQ 184 (620)
Q Consensus 113 ~~l~~EwK~Kv~~LE~ele~a~esE~~-~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~-~-~~~-----~~ 184 (620)
...+.+-+.++...|.++..=+..... ..+.......++.+.+..+..++.+++.++.++..|... . .+. ..
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~ 246 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSS 246 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccc
Confidence 344444455555555555533321111 112222344566666666777777777777777766542 1 000 01
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhH
Q 007043 185 SGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKL 238 (620)
Q Consensus 185 ~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~ 238 (620)
.....++..+-.|++++..+...+..- ...|..+..++..|...+..
T Consensus 247 ~~~~~l~~~l~~l~~~l~~l~~~y~~~-------hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 247 VANSELDGRIEALEKQLDALRLRYTDK-------HPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhccc-------ChHHHHHHHHHHHHHHHHHh
Confidence 112334445555555555554433221 23566677777776666544
No 157
>PLN02939 transferase, transferring glycosyl groups
Probab=46.34 E-value=7.1e+02 Score=31.38 Aligned_cols=77 Identities=27% Similarity=0.349 Sum_probs=43.8
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhh-HHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMS-LYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESK 162 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~-l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeae 162 (620)
+|..-+=++.++-+|..-+..|..-=+.-.. .++-|-.||+-|+.=|+. .|+|-|++-..|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--- 324 (977)
T PLN02939 262 LEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDR--------------ATNQVEKAALVLD--- 324 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhc---
Confidence 3333344455555555555444432222211 134488888888765553 4566666666654
Q ss_pred hhHHHHHHHHHhhhhh
Q 007043 163 FEINSLREKLKKLESR 178 (620)
Q Consensus 163 sEIasLkekv~~LE~~ 178 (620)
+...|++||..||..
T Consensus 325 -~~~~~~~~~~~~~~~ 339 (977)
T PLN02939 325 -QNQDLRDKVDKLEAS 339 (977)
T ss_pred -cchHHHHHHHHHHHH
Confidence 345788888888865
No 158
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.96 E-value=7.4e+02 Score=31.50 Aligned_cols=147 Identities=16% Similarity=0.254 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH--HhHHHHHHHHH---------HHHHHHhhHHHHhhhhhhh-hhhhhhhhHHHHHHH
Q 007043 6 RTVEDTLKMTKDRLDAAEKERDR--ALDELHEMKRM---------AQEANMRLSETMSTRKAAD-IYTMNETLSKELKVK 73 (620)
Q Consensus 6 ~~~qe~Lkkakeql~~~e~Ek~r--~~dEL~eakk~---------AdEan~kL~eal~a~k~ae-~~~e~~~l~~EL~i~ 73 (620)
..|++-|+-.-++|..+|.||.- ...+|.-.+|. -.|+|.+|. .|...+.+. +.+. .+.+.|.-+
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~-~le~~r~~~~e~s~--~~~~~~~~~ 263 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELE-RLEEDRSSAPEESE--QYIDALDKV 263 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHH-HHHHHHhccchhhh--hHHHHHHHH
Confidence 45666677777777777766642 23444444332 234555442 222222222 1111 123444444
Q ss_pred HHhhHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHh
Q 007043 74 EKNIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQ 153 (620)
Q Consensus 74 e~~i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~ 153 (620)
+..|..|+ ..+.+++..+..|+.|.+-++.-+..+...---..=++..|..+++-..+.....+.+|.-+--..++
T Consensus 264 ~d~~~~~~----~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e 339 (1200)
T KOG0964|consen 264 EDESEDLK----CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEE 339 (1200)
T ss_pred HHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 45555444 45677788888888888877777666655555555566677777776666666666655554444444
Q ss_pred hhhhhh
Q 007043 154 TMIVFE 159 (620)
Q Consensus 154 tk~lLe 159 (620)
.+--|.
T Consensus 340 ~~~EL~ 345 (1200)
T KOG0964|consen 340 KKDELS 345 (1200)
T ss_pred HHHHHH
Confidence 433333
No 159
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=45.94 E-value=5.7e+02 Score=30.20 Aligned_cols=137 Identities=16% Similarity=0.225 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q 007043 226 LEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDE 305 (620)
Q Consensus 226 ~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDE 305 (620)
..|+..|..+|......-+.....|+.|...+..|..+..+.+......+.++. --..+. .||.+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~----l~~k~~-----------~lL~d 391 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK----LKKKTV-----------ELLPD 391 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-----------HHhcC
Confidence 446777777777777788888888888888888877777666555444333322 112222 23333
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007043 306 LKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEET 377 (620)
Q Consensus 306 a~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~ 377 (620)
+-.=+.-|..-|+....-..+-...|.....-+++-++...+....-..|..+.+.-++......+.+-.+.
T Consensus 392 ~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 392 AEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555566666677777888999999999999998887766555555555555554444444444333
No 160
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=45.76 E-value=3.8e+02 Score=28.15 Aligned_cols=185 Identities=20% Similarity=0.174 Sum_probs=98.8
Q ss_pred hhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH----------hhhhHHhhhhhHHHHHHHHHhhhhhhh
Q 007043 90 EKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEK----------RKESEKKMFDSFAAQTKQLEQTMIVFE 159 (620)
Q Consensus 90 E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~----------a~esE~~~~eSL~sqtKqLE~tk~lLe 159 (620)
.--..|..|-.+|..|+.+- +.++.+|..++..|=..|-. +..--+..-.-....+-+++.++.++.
T Consensus 18 ~atd~IN~lE~~L~~ar~~f---r~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~ 94 (239)
T PF05276_consen 18 QATDEINRLENELDEARATF---RRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHA 94 (239)
T ss_pred HhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777776443 56888999888888888762 333333333444556667777777777
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHh
Q 007043 160 ESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLV 239 (620)
Q Consensus 160 eaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a 239 (620)
-++--|+.++..+..-.. ...+ -.-.+.|. .++..|-....++.....+-...
T Consensus 95 aAKe~v~laEq~l~~~~~-----~~~D----~~wqEmLn------------------~A~~kVneAE~ek~~ae~eH~~~ 147 (239)
T PF05276_consen 95 AAKEMVALAEQSLMSDSN-----WTFD----PAWQEMLN------------------HATQKVNEAEQEKTRAEREHQRR 147 (239)
T ss_pred HHHHHHHHHHHHHhcCCc-----cccc----HHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666555422210 0111 01112222 22233333333333333333333
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Q 007043 240 TGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLD 304 (620)
Q Consensus 240 ~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLD 304 (620)
.......-.-|-.|--.|+-.-.-++=-=+--...+..|+..+..|+.|...+..++..|...|.
T Consensus 148 ~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALr 212 (239)
T PF05276_consen 148 ARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALR 212 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223333333333333333222222335677888899999999999999999988774
No 161
>PF15294 Leu_zip: Leucine zipper
Probab=45.71 E-value=3.2e+02 Score=29.45 Aligned_cols=136 Identities=24% Similarity=0.332 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHh-------HHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhhHHHHHHHHHhh
Q 007043 5 MRTVEDTLKMTKDRLDAAEKERDRAL-------DELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNI 77 (620)
Q Consensus 5 l~~~qe~Lkkakeql~~~e~Ek~r~~-------dEL~eakk~AdEan~kL~eal~a~k~ae~~~e~~~l~~EL~i~e~~i 77 (620)
....|++..++|.+|-..++.=..++ ..|++.+.++- +.+-...+ -.. .+++---+..+
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~--~~~~k~~~------~~~------~q~l~dLE~k~ 199 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG--DQKGKKDL------SFK------AQDLSDLENKM 199 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccccc------ccc------ccchhhHHHHH
Confidence 35567777777777777666544444 44444444221 11110000 000 13333344567
Q ss_pred HHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhh
Q 007043 78 ESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIV 157 (620)
Q Consensus 78 ~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~l 157 (620)
..||.+++..+-..+.....|..+|..+|.. |-.-...+..-+.+|++ .-++|.+.-.-+.+
T Consensus 200 a~lK~e~ek~~~d~~~~~k~L~e~L~~~Khe-------lL~~QeqL~~aekeLek-----------KfqqT~ay~NMk~~ 261 (278)
T PF15294_consen 200 AALKSELEKALQDKESQQKALEETLQSCKHE-------LLRVQEQLSLAEKELEK-----------KFQQTAAYRNMKEI 261 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcchhhhcchhhHHH-----------HhCccHHHHHhHHH
Confidence 7788888888888888888888888877532 11112223333333332 22456777777777
Q ss_pred hhhhhhhHHHHHHHH
Q 007043 158 FEESKFEINSLREKL 172 (620)
Q Consensus 158 LeeaesEIasLkekv 172 (620)
|.-..-+|..|+.++
T Consensus 262 ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 262 LTKKNEQIKELRKRL 276 (278)
T ss_pred HHhccHHHHHHHHHh
Confidence 777788888888765
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.63 E-value=4e+02 Score=28.72 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=37.8
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
+..|..|...|..||+....+.+...+.+.+|..-+.+...+-.+ ...+.-....+.-++...+.+.+..|..
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~-------~~~~~n~~~~~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE-------YWREYNELQLELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666655555555555554444433333322222 2222223333333344444444444444
Q ss_pred HHHHhhhHHHHHHhh
Q 007043 302 QLDELKKEADLYRNT 316 (620)
Q Consensus 302 mLDEa~~E~~~lk~t 316 (620)
+.+ .+++|++|
T Consensus 125 ~~~----~L~~L~kt 135 (314)
T PF04111_consen 125 ASN----QLDRLRKT 135 (314)
T ss_dssp HHH----HHHCHHT-
T ss_pred HHH----HHHHHHhc
Confidence 443 45666665
No 163
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=42.80 E-value=4.1e+02 Score=27.63 Aligned_cols=152 Identities=24% Similarity=0.284 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKF 163 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaes 163 (620)
++.+.--.+..++.+...|..||.-.-.|+.=+.+--.++--+|..|+.+-+ ..+.-.|...+|+.
T Consensus 51 ~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee----raE~~Es~~~eLeE---------- 116 (205)
T KOG1003|consen 51 IENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE----RAEAAESQSEELEE---------- 116 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHH----------
Confidence 4555555566666666777777777777777777777777777777764433 22333344444443
Q ss_pred hHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHH
Q 007043 164 EINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAE 243 (620)
Q Consensus 164 EIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eE 243 (620)
++..+...+.+|+...- .+....+...-++..+-...-+|-.....+...|+.|-.++..|...|...+...
T Consensus 117 e~~~~~~nlk~l~~~ee--------~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky 188 (205)
T KOG1003|consen 117 DLRILDSNLKSLSAKEE--------KLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKY 188 (205)
T ss_pred HHHHhHhHHHHHHHHHH--------HHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHH
Confidence 22222334444432200 0111223334444444444444544444666788888888888888888877766
Q ss_pred HhhhhhHHHHHHHH
Q 007043 244 ENNQKALDDLALAL 257 (620)
Q Consensus 244 EKsKKAMEdLA~AL 257 (620)
...++-.|.....|
T Consensus 189 ~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 189 EEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555444443
No 164
>PF15294 Leu_zip: Leucine zipper
Probab=42.64 E-value=2.9e+02 Score=29.80 Aligned_cols=40 Identities=38% Similarity=0.431 Sum_probs=27.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007043 346 EEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILK 385 (620)
Q Consensus 346 EEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LK 385 (620)
-.||..++.||.+|-+-|+..+......-+|..+|...|+
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~ 170 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLK 170 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777766666666666666665
No 165
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=42.28 E-value=5.7e+02 Score=29.16 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=16.6
Q ss_pred hhhHhHhhhHHHHHHHHHhhhhhhhh
Q 007043 407 RLQDALHAKEEALNFICRENEDLKMN 432 (620)
Q Consensus 407 ~LKd~L~dKEneLq~i~qEne~Lr~~ 432 (620)
.|-+.|..|-..|..+.-|+-.|++.
T Consensus 396 ~lt~~Li~KQ~~lE~l~~ek~al~lq 421 (511)
T PF09787_consen 396 QLTESLIQKQTQLESLGSEKNALRLQ 421 (511)
T ss_pred hccHHHHHHHHHHHHHHhhhhhcccc
Confidence 45566666666666666666666653
No 166
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=41.80 E-value=8.9e+02 Score=31.24 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHhhhhhhHhHhhhHHHHH--HHHHhh-hhhhhhhhhhHHhHHHHHHHHHhhhh
Q 007043 402 RAENARLQDALHAKEEALN--FICREN-EDLKMNEAANIESMKELKKLLSESSS 452 (620)
Q Consensus 402 kaEn~~LKd~L~dKEneLq--~i~qEn-e~Lr~~EaaA~ekikELs~lL~ea~~ 452 (620)
..+....+..|.++|.+|- .|..++ .-||-+=-.|..-|+.+...|....+
T Consensus 1092 ~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1092 EQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566677888888888862 222222 22333335566668888888877654
No 167
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.29 E-value=3.1e+02 Score=25.80 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=31.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHH---HHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHH
Q 007043 307 KKEADLYRNTADRLTLEAEES---LLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLK 364 (620)
Q Consensus 307 ~~E~~~lk~tverl~~Ea~~s---~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~ 364 (620)
.++++.|.+.+++|+.....+ ...|..++..+-.-++..+.-+-..+.|+.|+...+.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554433332 2455666666666666665555555556665555543
No 168
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=40.91 E-value=3.7e+02 Score=26.64 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007043 320 LTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAIN 389 (620)
Q Consensus 320 l~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~ 389 (620)
+++-+......+..-+.-|=-+|+..++.+..++.-+.+++...+..+.+.........++......|+.
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666777778888888888888888888888888888887777777777777666655544
No 169
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.81 E-value=5.2e+02 Score=28.22 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=55.6
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHH
Q 007043 150 QLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEV 229 (620)
Q Consensus 150 qLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk 229 (620)
..+.+++-|++--.++..|.++..-. . .....|.+|+-+++.+..-. ....++...=.-+.+.+
T Consensus 77 kR~ein~kl~eL~~~~~~l~e~~~~~-----~-------~~~~~~~~ler~i~~Le~~~----~T~~L~~e~E~~lvq~I 140 (294)
T COG1340 77 KRDEINAKLQELRKEYRELKEKRNEF-----N-------LGGRSIKSLEREIERLEKKQ----QTSVLTPEEERELVQKI 140 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-----h-------ccCCCHHHHHHHHHHHHHHH----HhcCCChHHHHHHHHHH
Confidence 34555555555445555555442111 0 12233455555555443322 22223333344566778
Q ss_pred HHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhh
Q 007043 230 RFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTS 273 (620)
Q Consensus 230 ~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~ 273 (620)
..|..+|..+....+-.-+.++-+|-+. +.-.+|++-++++..
T Consensus 141 ~~L~k~le~~~k~~e~~~~~~el~aei~-~lk~~~~e~~eki~~ 183 (294)
T COG1340 141 KELRKELEDAKKALEENEKLKELKAEID-ELKKKAREIHEKIQE 183 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8899999998887777777666555443 233445555554433
No 170
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.56 E-value=3.4e+02 Score=25.99 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=44.4
Q ss_pred HHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhh
Q 007043 96 DELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKL 175 (620)
Q Consensus 96 e~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~L 175 (620)
..|+.++...+.+.......+..-...+..|+....+... +++...-++++..-++|-+-..-|..++.++..|
T Consensus 37 ~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~------E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 37 KRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKE------EARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 3333333333333333333344455555555555544432 3445566788888888888888888888888777
Q ss_pred h
Q 007043 176 E 176 (620)
Q Consensus 176 E 176 (620)
-
T Consensus 111 G 111 (136)
T PF04871_consen 111 G 111 (136)
T ss_pred C
Confidence 4
No 171
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.55 E-value=4e+02 Score=30.84 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=50.5
Q ss_pred hhHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHH----HHHH
Q 007043 76 NIESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQ----TKQL 151 (620)
Q Consensus 76 ~i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sq----tKqL 151 (620)
.+...|..++.++.+.. .|+.++.++..+.--+...+.....|+..+..++..-++.++.+-.-+..- .+.-
T Consensus 348 qlen~k~~~e~~~~e~~----~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 348 QLENQKQYYELLITEAD----SLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHhHHHHHHHHHHHHH----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555555555443 344444444444444555555566666666666665555555544443322 2222
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHhh
Q 007043 152 EQTMIVFEESKFEINSLREKLKKL 175 (620)
Q Consensus 152 E~tk~lLeeaesEIasLkekv~~L 175 (620)
++-+..+......|..|+++|+-|
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333444444566777777777666
No 172
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.90 E-value=4.8e+02 Score=27.58 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.3
Q ss_pred HHHHHhhHHH
Q 007043 597 ALIRRFGDIL 606 (620)
Q Consensus 597 allrkFGdll 606 (620)
||.+.|+-.|
T Consensus 411 ~~~~~~~~~~ 420 (423)
T TIGR01843 411 PITDSVQEAL 420 (423)
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.76 E-value=5.2e+02 Score=27.98 Aligned_cols=124 Identities=22% Similarity=0.225 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHH------
Q 007043 319 RLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDIL---KQAIN------ 389 (620)
Q Consensus 319 rl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~L---Kqa~~------ 389 (620)
-.+.+++..-=+|+.+= +-+.....++.+..++.+-..|..-+...-.-.-.+++..+.|+..+ ++...
T Consensus 125 ~aRl~ak~~WYeWR~kl--legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d 202 (312)
T smart00787 125 FARLEAKKMWYEWRMKL--LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD 202 (312)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 34557788888998873 33444445555566666555555444333333333333333443333 22222
Q ss_pred --HHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhh
Q 007043 390 --EANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESS 451 (620)
Q Consensus 390 --Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~ 451 (620)
|...+++.+..-..+.+..+..+.+++.+|+.+...++.. -.++.++...|.++.
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~-------~~~k~e~~~~I~~ae 259 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL-------TNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666666555555543 344555555555554
No 174
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=39.69 E-value=4.5e+02 Score=27.19 Aligned_cols=93 Identities=26% Similarity=0.371 Sum_probs=50.0
Q ss_pred hHHHHHHhhHHHHhhHHHHHHHHHHHH----HHHHHHHHH-------hHHHHHHHHHHHH----------HHHHHHH-HH
Q 007043 337 RFVDCIKRAEEERDGAQQEHEAMLESL----KEAENTTRA-------AKEETLKLRDILK----------QAINEAN-VA 394 (620)
Q Consensus 337 ~fV~ciK~sEEE~~s~~~E~~rL~esl----~~aE~e~~~-------~~eE~~kLrd~LK----------qa~~Ean-~a 394 (620)
.+|.++|+.|.|..++-.+..+|+.-+ ...=++.+. ..++|+.|||..= ..-.|-. .-
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFG 99 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFG 99 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhh
Confidence 478999999999777655555444322 111223333 4456666665541 1111100 01
Q ss_pred HHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhh
Q 007043 395 KEASGIARAENARLQDALHAKEEALNFICRENEDL 429 (620)
Q Consensus 395 ~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~L 429 (620)
.-+...-+-|.+.-...|.+=|.-.+.+.+||-+|
T Consensus 100 ryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eL 134 (195)
T PF10226_consen 100 RYTASVMRQEVAQYQQKLKELEDKQEELIRENLEL 134 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 11234445566666666666677777777777665
No 175
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.35 E-value=8.1e+02 Score=30.09 Aligned_cols=270 Identities=23% Similarity=0.204 Sum_probs=123.1
Q ss_pred HhhhHHH--hhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH---h---hhhhhhhhhhhHHHHH
Q 007043 98 LKGTLSN--AKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLE---Q---TMIVFEESKFEINSLR 169 (620)
Q Consensus 98 L~~el~~--Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE---~---tk~lLeeaesEIasLk 169 (620)
+|..+++ .|.++|....+..++..||-.||..+..+.. |+ +.|--++|.|- + .+..|-+.--.|+.|.
T Consensus 384 ~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~k-ER---Dalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm 459 (961)
T KOG4673|consen 384 LNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTK-ER---DALRREQKSLKKELAAALLKDELAEKDEIINQLM 459 (961)
T ss_pred hhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH-hH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444444 3444555577888888888888888875543 11 33333333221 1 1234445555566666
Q ss_pred HHHHhhhhhhhhhc---------ccC----cccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHH
Q 007043 170 EKLKKLESRDLNAS---------QSG----LAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNEL 236 (620)
Q Consensus 170 ekv~~LE~~~~~~~---------~~e----~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL 236 (620)
..-..|-..-...+ +.+ ...+-..|-.|.++++.++.-+..--.-|| .+.|-+.++..|+
T Consensus 460 ~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek-------~~~E~I~k~~ae~ 532 (961)
T KOG4673|consen 460 AEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEK-------LLQETIEKHQAEL 532 (961)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHH
Confidence 65444432200000 000 011122334444444444333211111111 2233444555555
Q ss_pred hHhHHHHHhhhhhHHHH---HHHHHHHhHHHHH-HHHHHhhhH----HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhh
Q 007043 237 KLVTGAEENNQKALDDL---ALALKEVALEASQ-AKEKLTSTE----AELEVKKAESEELKLKLKNIEDSHKLQLDELKK 308 (620)
Q Consensus 237 ~~a~~eEEKsKKAMEdL---A~AL~EVS~EAre-aKekll~~Q----~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~ 308 (620)
..-.+.--+++--|++| +.|++..-.+|+- .+-.--.+| .+...+--|+++|+..|.-++-..---=|--|+
T Consensus 533 ~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~ 612 (961)
T KOG4673|consen 533 TRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRG 612 (961)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554 3344444444443 211111122 223344456677777666655332221222244
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH--
Q 007043 309 EADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEE-TLKLRDILK-- 385 (620)
Q Consensus 309 E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE-~~kLrd~LK-- 385 (620)
||.-|-.....-+.-.+++... +.+.-.=.-|-+++|+++......+|+- ...|-+.|-
T Consensus 613 Ei~~LqrRlqaaE~R~eel~q~------------------v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dS 674 (961)
T KOG4673|consen 613 EIEDLQRRLQAAERRCEELIQQ------------------VPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDS 674 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------------------ccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Confidence 4444433222222111111111 1111112335677788888877777776 667777775
Q ss_pred HHHHHHHHHHH
Q 007043 386 QAINEANVAKE 396 (620)
Q Consensus 386 qa~~Ean~a~E 396 (620)
|.+--+||..+
T Consensus 675 Qtllr~~v~~e 685 (961)
T KOG4673|consen 675 QTLLRINVLEE 685 (961)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 176
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=39.29 E-value=2.6e+02 Score=27.18 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=50.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007043 309 EADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAI 388 (620)
Q Consensus 309 E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~ 388 (620)
+-+.+..|++.+ ..+|..|=-+++-.||..+-++..+..|..||-+.-+..++... .|++.|..+.
T Consensus 23 d~e~~~dtLe~i-------~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~-------~Lk~yL~~~m 88 (162)
T PF05565_consen 23 DEEAIADTLESI-------EDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRID-------RLKEYLLDAM 88 (162)
T ss_pred CHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 345555566554 45566677789999999999999999999999999887777666 6777765554
Q ss_pred H
Q 007043 389 N 389 (620)
Q Consensus 389 ~ 389 (620)
.
T Consensus 89 ~ 89 (162)
T PF05565_consen 89 E 89 (162)
T ss_pred H
Confidence 4
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.02 E-value=8.6e+02 Score=30.31 Aligned_cols=262 Identities=21% Similarity=0.230 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh-hh-hhcccCcccc
Q 007043 113 MSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESR-DL-NASQSGLAGT 190 (620)
Q Consensus 113 ~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~-~~-~~~~~e~~~l 190 (620)
......+|.-+.+|..+.+.-++.++ ..+-+-++.+..+++--+++++|++++..|... +. ..++.+...
T Consensus 656 ~~~~~kyK~lI~~lD~~~e~lkQ~~~-------~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q- 727 (970)
T KOG0946|consen 656 DDIQQKYKGLIRELDYQIENLKQMEK-------ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ- 727 (970)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh-
Confidence 34456678888888888877777332 223445555667777888888899888888765 21 111111000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhh--------------hHHHHHHH
Q 007043 191 NETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQK--------------ALDDLALA 256 (620)
Q Consensus 191 q~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKK--------------AMEdLA~A 256 (620)
.. +....+|+| ++++..|.++|.+....+..+-+|-.- +|..++.+
T Consensus 728 ------------~~--e~~~t~~ee------l~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~ 787 (970)
T KOG0946|consen 728 ------------GA--EASKTQNEE------LNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDN 787 (970)
T ss_pred ------------HH--HhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhh
Confidence 00 001112222 333344444444443333333222111 12222222
Q ss_pred HH--HHhHH----HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Q 007043 257 LK--EVALE----ASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLA 330 (620)
Q Consensus 257 L~--EVS~E----AreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~e 330 (620)
|+ +...| ..+-+-++..-|.++-..+.|+.-+-.-..+. -++...
T Consensus 788 ~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~-----------------------------a~~le~ 838 (970)
T KOG0946|consen 788 LGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAA-----------------------------ADSLES 838 (970)
T ss_pred hhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------------hhhhHH
Confidence 22 11111 12222334444444444444444443333332 233444
Q ss_pred HhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhH
Q 007043 331 WNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQD 410 (620)
Q Consensus 331 W~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd 410 (620)
-..-+..+-+-.+..|.+.+.++++..-.-+..+ +.-+....|. -|+.. --+..|+...+.+|..||
T Consensus 839 m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~-------~ltEk~~sl~---~qads--e~l~ka~~~~k~~nl~lk- 905 (970)
T KOG0946|consen 839 MGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIK-------ELTEKISSLE---AQADS--ETLSKALKTVKSENLSLK- 905 (970)
T ss_pred hhccccchhhHHHHHHHHHHHHHHHhhhhhhHHH-------HHhhhhhhHH---Hhhcc--hHHHHHHHHhhcccchhc-
Confidence 4555666666666777777777665554444432 1111111111 12222 223445555566665555
Q ss_pred hHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhh
Q 007043 411 ALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSS 452 (620)
Q Consensus 411 ~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~ 452 (620)
.-+..||+++|-+-=+.--++|.-|+..|...-.
T Consensus 906 --------i~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q 939 (970)
T KOG0946|consen 906 --------IVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ 939 (970)
T ss_pred --------ccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 4567899999999888888888888888776643
No 178
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=37.38 E-value=5.2e+02 Score=28.00 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=60.6
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHh-----hhhHHHHHH
Q 007043 269 EKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEK-----ETRFVDCIK 343 (620)
Q Consensus 269 ekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~K-----E~~fV~ciK 343 (620)
.+|..++..+..||.+.+.+ ..+..+.+++..|..-=..+.-+|+.|+..|..++..+..-..+ +-.+---+-
T Consensus 155 ~~~S~~~~~I~~aRL~qD~~--I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE 232 (289)
T PF10455_consen 155 LKYSSAYEKIAQARLEQDQL--IQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNKAKPEKEEQLRVELE 232 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHH
Confidence 46778889999999888864 44556667777777777788899999999999999888877663 233344455
Q ss_pred hhHHHHhhHHHH
Q 007043 344 RAEEERDGAQQE 355 (620)
Q Consensus 344 ~sEEE~~s~~~E 355 (620)
.+|+|.+++-.+
T Consensus 233 ~aEDeFv~aTee 244 (289)
T PF10455_consen 233 QAEDEFVSATEE 244 (289)
T ss_pred HHHHHHHHHHHH
Confidence 556655555444
No 179
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.78 E-value=2.1e+02 Score=33.97 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHH
Q 007043 248 KALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEES 327 (620)
Q Consensus 248 KAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s 327 (620)
+++.++.--+.-||-|.+|...|-...|.|++..++.|++||..+-+.+ -|...|+..+++.+-..++.
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q-----------~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQ-----------LELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHhHHHHHHHHHHHH
Confidence 4467777778889999999999999999999999999999998885543 34555666666655444443
No 180
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.70 E-value=2.8e+02 Score=27.44 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=44.6
Q ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhh-HHHHHHHHHHHHHH
Q 007043 275 EAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNT-ADRLTLEAEESLLA 330 (620)
Q Consensus 275 Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~t-verl~~Ea~~s~~e 330 (620)
+..+...-.++++.+.........|+..|.+|+.++..++.. .+++.+++......
T Consensus 43 ~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~ 99 (155)
T PRK06569 43 QTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKN 99 (155)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777788888888899999999999999988877 88888887665543
No 181
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.06 E-value=5.7e+02 Score=27.31 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=30.4
Q ss_pred hhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 007043 91 KDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKE 135 (620)
Q Consensus 91 ~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~e 135 (620)
.+..|..++... ++.+.......+.+-+.++...|.+|..=+.
T Consensus 156 ~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 156 GERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677664333 6677777888888888888888888875444
No 182
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.54 E-value=6.3e+02 Score=27.70 Aligned_cols=182 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHH-HHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 007043 253 LALAL-KEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAW 331 (620)
Q Consensus 253 LA~AL-~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW 331 (620)
||+-+ +..-..=+..-+++......|..+..+|..|+-.|.--.+=++...+. .--...-......|
T Consensus 80 laA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~------------~ee~~~~~~~~~~~ 147 (306)
T PF04849_consen 80 LAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSND------------DEESEPESSESTPL 147 (306)
T ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH------------hhhcccccCCCccc
Q ss_pred hHhh-----------hhHHHHHHhhHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007043 332 NEKE-----------TRFVDCIKRAEEERDGAQQEHEAML-----------ESLKEAENTTRAAKEETLKLRDILKQAIN 389 (620)
Q Consensus 332 ~~KE-----------~~fV~ciK~sEEE~~s~~~E~~rL~-----------esl~~aE~e~~~~~eE~~kLrd~LKqa~~ 389 (620)
+..+ -.|=.-+|..|+|+..++.|.++|. -++.+.=.+...++...+.|.+-|-.--.
T Consensus 148 ~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 148 RRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTE 227 (306)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhc
Q 007043 390 EANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSK 453 (620)
Q Consensus 390 Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k 453 (620)
+...-++-+. +|.-.+.|-+..++.+..||++|+..=.++.+.=..|..-|.+.-.|
T Consensus 228 e~~rQQEEIt-------~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 228 ENRRQQEEIT-------SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 183
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=33.30 E-value=3.8e+02 Score=24.53 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHH
Q 007043 277 ELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEE 347 (620)
Q Consensus 277 ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEE 347 (620)
.+.....++...+..+......+..++....+...-+..++++|..-|......|..+...+-.++.....
T Consensus 41 ~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~ 111 (213)
T cd00176 41 KHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQF 111 (213)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666777777777888888778899999999999999999999999999888887766543
No 184
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.00 E-value=1.2e+02 Score=34.82 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHh
Q 007043 113 MSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKK 174 (620)
Q Consensus 113 ~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~ 174 (620)
..-+.+++.|+.+||.+|+.-+. ++...++++......|++-+.+|..|+.++..
T Consensus 68 qSALteqQ~kasELEKqLaaLrq-------Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRR-------ELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999998754 23334466667777788888899999998844
No 185
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=32.40 E-value=5.7e+02 Score=26.28 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEEL 288 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~L 288 (620)
++..+..++..|..+.+.-.....+.-.=...+..+...+...|.+....+-..+..+...-.++..|
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444333333333333333444444444444444444444444444333333333
No 186
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=32.12 E-value=2.2e+02 Score=27.84 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=39.6
Q ss_pred hhH-HHHHHHH-----HhhHHhhH-----------------------HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhH
Q 007043 65 TLS-KELKVKE-----KNIESLKK-----------------------EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSL 115 (620)
Q Consensus 65 ~l~-~EL~i~e-----~~i~~LK~-----------------------~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l 115 (620)
++| +||-... .+|.+||+ ++|..-.++...|++|+.+++.+++ -
T Consensus 31 smSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~-------E 103 (135)
T KOG4196|consen 31 SMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRR-------E 103 (135)
T ss_pred HhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 445 7776555 46888887 5888888888888888888876665 4
Q ss_pred HHHHHHHHHHH
Q 007043 116 YSESKKKLQEL 126 (620)
Q Consensus 116 ~~EwK~Kv~~L 126 (620)
++-|+.|.+-|
T Consensus 104 ~da~k~k~e~l 114 (135)
T KOG4196|consen 104 LDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHH
Confidence 56677766554
No 187
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=31.90 E-value=7.1e+02 Score=27.23 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhhhhh-hhhh-------cccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHH
Q 007043 162 KFEINSLREKLKKLESR-DLNA-------SQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLK 233 (620)
Q Consensus 162 esEIasLkekv~~LE~~-~~~~-------~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~ 233 (620)
-..++.|..++..||.. |... .+.....+...|..|..++.++...+-.+ ....++.|+.++..|.
T Consensus 208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~------i~~rl~~L~~~~~~l~ 281 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDS------IERRLKSLLSELEELA 281 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHH------HHHHHHHHHHHHHHHH
Confidence 35689999999999987 4411 12224567788999998888874332111 2234555555555543
No 188
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=31.82 E-value=6.8e+02 Score=26.98 Aligned_cols=152 Identities=24% Similarity=0.322 Sum_probs=86.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhH-----hHHHHHhhhhhHHHHHHHHHHHhHHHHHHH--------------HHHhh--hHH
Q 007043 218 SLLKVRSLLEEVRFLKNELKL-----VTGAEENNQKALDDLALALKEVALEASQAK--------------EKLTS--TEA 276 (620)
Q Consensus 218 ass~i~~L~EEk~~L~~EL~~-----a~~eEEKsKKAMEdLA~AL~EVS~EAreaK--------------ekll~--~Q~ 276 (620)
+-+..++||.|..+-...|.. ++.++++-+-..+-+-.+|.+|+.-..+-. ++|-. -|-
T Consensus 72 ~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQy 151 (309)
T PF09728_consen 72 AKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQY 151 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445688888887766665553 555666666666778888888876543322 22211 111
Q ss_pred H--------------H--HHHHhhHHHHHHHHHhhHHHH---H-HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhh
Q 007043 277 E--------------L--EVKKAESEELKLKLKNIEDSH---K-LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKET 336 (620)
Q Consensus 277 E--------------l--E~a~aqie~Lk~~Lk~teeky---e-~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~ 336 (620)
+ | .-+.|-++..+..+....++. . .||+++. .+.-++.|- .+...=...|..|=-
T Consensus 152 e~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~-~~~~~~~~E----~~Lr~QL~~Y~~Kf~ 226 (309)
T PF09728_consen 152 ELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAA-QVQTLKETE----KELREQLNLYSEKFE 226 (309)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 1 1 111122222222222211111 1 1333333 222333333 333444556777777
Q ss_pred hHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 007043 337 RFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAK 374 (620)
Q Consensus 337 ~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~ 374 (620)
.|-+++.+|-+=..+.+.||.++....+.-|.++...+
T Consensus 227 efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k 264 (309)
T PF09728_consen 227 EFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWK 264 (309)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999887777666433
No 189
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=31.40 E-value=5.9e+02 Score=26.11 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=14.5
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHhh
Q 007043 293 KNIEDSHKLQLDELKKEADLYRNT 316 (620)
Q Consensus 293 k~teekye~mLDEa~~E~~~lk~t 316 (620)
..++.-++.++++|+.|++.++..
T Consensus 82 ~eA~~~~~~i~~~A~~ea~~~~~~ 105 (246)
T TIGR03321 82 EEAQAERQRLLDEAREEADEIREK 105 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777776655543
No 190
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.29 E-value=5.7e+02 Score=25.90 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhH-------HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 007043 228 EVRFLKNELKLVTGAEENNQKAL-------DDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK 300 (620)
Q Consensus 228 Ek~~L~~EL~~a~~eEEKsKKAM-------EdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye 300 (620)
.+..|..|.+.-+.=.-+-.||. -+|.-.|+-+..|.|-.+++|-..|.-.-.....+-+...-|..+++.+.
T Consensus 27 ~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 27 KLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444454 46667778888888888888877777666666666655555555555444
Q ss_pred H
Q 007043 301 L 301 (620)
Q Consensus 301 ~ 301 (620)
.
T Consensus 107 ~ 107 (194)
T PF15619_consen 107 H 107 (194)
T ss_pred H
Confidence 3
No 191
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.22 E-value=7.8e+02 Score=28.88 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHHhhhHHHHH----HHHhhHHHHHHHHHhhHHHHHHHHH
Q 007043 260 VALEASQAKEKLTSTEAELE----VKKAESEELKLKLKNIEDSHKLQLD 304 (620)
Q Consensus 260 VS~EAreaKekll~~Q~ElE----~a~aqie~Lk~~Lk~teekye~mLD 304 (620)
+..+.+++..++...|+||+ +|..|+.-+-.-|-+.+++.-.--|
T Consensus 460 l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~e 508 (518)
T PF10212_consen 460 LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQRE 508 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777777776 5677888887777777777665555
No 192
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.87 E-value=8.6e+02 Score=28.13 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Q 007043 6 RTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADI 59 (620)
Q Consensus 6 ~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~ 59 (620)
.+.|.||-...-||.. +..|+.-+|-+|.=.-.--.||+++.++++.
T Consensus 34 qa~q~dl~~lrtql~~-------a~aeme~ikaia~vsE~tk~EaV~av~rq~~ 80 (542)
T KOG0993|consen 34 QAAQDDLGHLRTQLWE-------AQAEMENIKAIATVSEPTKSEAVSAVVRQEE 80 (542)
T ss_pred hhhcchHHHHHHHHHH-------HHHHHHHHHHHHHhcCcchHHHHHHHHHhhc
Confidence 4455555555555544 4556667777887777777888888888773
No 193
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=30.45 E-value=6.4e+02 Score=26.23 Aligned_cols=36 Identities=33% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhh
Q 007043 401 ARAENARLQDALHAKEEALNFICRENEDLKMNEAAN 436 (620)
Q Consensus 401 AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA 436 (620)
+..+..+|.+....|+.+...+.++...-|..+-.+
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~a 122 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEAREDEEEA 122 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666666555544333
No 194
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.40 E-value=6.8e+02 Score=26.50 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhh-------hHHHHHHHHhhHHHHHHHHHhhH
Q 007043 224 SLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTS-------TEAELEVKKAESEELKLKLKNIE 296 (620)
Q Consensus 224 ~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~-------~Q~ElE~a~aqie~Lk~~Lk~te 296 (620)
..+.+-.+|...|..+-..-+|+||.-+. +--++..|+.++.. .++.++-++.+...=...+..+.
T Consensus 110 ~~~~~~~klqk~l~~~~~~leksKk~Y~~-------acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aK 182 (252)
T cd07675 110 MHLQEGRKAQQYLDMCWKQMDNSKKKFER-------ECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESK 182 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677788888888888888888873 33345555555443 55566777777777777888899
Q ss_pred HHHHHHHHHhhhHHHH
Q 007043 297 DSHKLQLDELKKEADL 312 (620)
Q Consensus 297 ekye~mLDEa~~E~~~ 312 (620)
..|...|..+|..-..
T Consensus 183 n~Y~~~L~~~N~~q~k 198 (252)
T cd07675 183 NEYAAQLQNFNGEQHK 198 (252)
T ss_pred HHHHHHHHHHHHhhHh
Confidence 9999999988765555
No 195
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=29.77 E-value=4.1e+02 Score=23.77 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHH
Q 007043 144 FAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKD 206 (620)
Q Consensus 144 L~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e 206 (620)
|.+.+..++.+...+.....+++.|.+++..|+.+ +.+++..-+...+..++|..++..++.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~E-k~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAE-KAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 67788889999999999999999999999999874 223444445566666777666666543
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.39 E-value=1.2e+03 Score=29.13 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q 007043 257 LKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDE 305 (620)
Q Consensus 257 L~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDE 305 (620)
+.+++.|-.+..+++...+.++-.-.-|.+.||.-|+....+...|+..
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~ 728 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQG 728 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhH
Confidence 4566677777777787777777777778888888888777777777654
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.39 E-value=5.1e+02 Score=24.39 Aligned_cols=87 Identities=22% Similarity=0.320 Sum_probs=39.3
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
+..+.-++..|...+...++.-+.....+..+ -...+.++..+-..+.-+...+.++..++..+......|..
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~-------~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~ 133 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASA-------EEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH 133 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333333322 22333344444444444455555566666666666655554
Q ss_pred HHHHhhhHHHHHHh
Q 007043 302 QLDELKKEADLYRN 315 (620)
Q Consensus 302 mLDEa~~E~~~lk~ 315 (620)
=+-=-..|++.|++
T Consensus 134 e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 134 ELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 44333334444443
No 198
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.30 E-value=1e+03 Score=28.00 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=95.3
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHH-HHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhh
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSES-KKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEES 161 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~Ew-K~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeea 161 (620)
.+.+.|+-++.+|.+.++-|...-.||..|+.+=... ..+++.|+..|. +.|..+-.- -+..-++.
T Consensus 269 ~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~----------~~lea~q~a---gkla~Qe~ 335 (531)
T PF15450_consen 269 KLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQ----------ENLEAMQLA---GKLAQQET 335 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHH----------HHHHHHHHh---hhhhHhhh
Confidence 4788899999999999999999999998886654443 355555555544 344333322 56667888
Q ss_pred hhhHHHHHHHHHhhhhh-hhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhH
Q 007043 162 KFEINSLREKLKKLESR-DLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVT 240 (620)
Q Consensus 162 esEIasLkekv~~LE~~-~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~ 240 (620)
.+.+..|+++-..|+.. .....+ ...|..-|..|.+++.. +.++|.--+..+.+
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~--lkDLd~~~~aLs~rld~-----------------qEqtL~~rL~e~~~------ 390 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQ--LKDLDDHILALSWRLDL-----------------QEQTLNLRLSEAKN------ 390 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhH-----------------HHHHHHHHHHHHHH------
Confidence 89999999988888764 111111 11122222233322222 22222222222222
Q ss_pred HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 007043 241 GAEENNQKALDDLALALKEVALEASQAKEKLT 272 (620)
Q Consensus 241 ~eEEKsKKAMEdLA~AL~EVS~EAreaKekll 272 (620)
+=+...|+.|++|+.--.++..-.++.++++-
T Consensus 391 e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd 422 (531)
T PF15450_consen 391 EWESDERKSLEKLDQWQNEMEKHLKEVQEKVD 422 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556789999999988888888888877764
No 199
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.24 E-value=4.2e+02 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=10.6
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 007043 187 LAGTNETVEFLNSELQLAKDK 207 (620)
Q Consensus 187 ~~~lq~~ve~Lksele~~~e~ 207 (620)
...+...|..|+.++..+...
T Consensus 111 ~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEK 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 200
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.22 E-value=5.7e+02 Score=26.73 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHh
Q 007043 257 LKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 257 L~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa 306 (620)
......+..-.++.+-.++.+|+.+..+...|+.-..+.+.-|-.+++|.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 34455566667777778888888888888888888888877777777763
No 201
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=28.18 E-value=6.5e+02 Score=25.58 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhh
Q 007043 84 WEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKF 163 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaes 163 (620)
+|..+.|.+.+|.+....|..+...=.-|...+..-...+..|-.-|..++..-..+--.....-.+|..-..+|+.++.
T Consensus 72 Le~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~ 151 (188)
T PF05335_consen 72 LEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKR 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHh
Q 007043 164 EINSLREKLKK 174 (620)
Q Consensus 164 EIasLkekv~~ 174 (620)
-+..|...+..
T Consensus 152 Rve~L~~QL~~ 162 (188)
T PF05335_consen 152 RVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHH
No 202
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.15 E-value=4.2e+02 Score=28.57 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH---
Q 007043 224 SLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK--- 300 (620)
Q Consensus 224 ~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye--- 300 (620)
.+...+.=++..|..+...-...... |.+.-.+..+...+|...+.+++.+..+..+|...++.+..++.
T Consensus 211 ~v~~~V~P~~~~l~~a~~~l~~~~~~-------L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~ 283 (344)
T PF12777_consen 211 EVNKEVEPKRQKLEEAEAELEEAEEQ-------LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAE 283 (344)
T ss_dssp HHCCCCCHHHHHHHHCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 33333444555555554444333333 33444444455555555555555555555555555555544443
Q ss_pred HHHHHhhhHHHHHHhhHHHHHHHHHHH
Q 007043 301 LQLDELKKEADLYRNTADRLTLEAEES 327 (620)
Q Consensus 301 ~mLDEa~~E~~~lk~tverl~~Ea~~s 327 (620)
.+++-...|..+|..++..+.......
T Consensus 284 ~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 284 KLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 355555567888888888887666543
No 203
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.56 E-value=1.2e+03 Score=28.39 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=32.0
Q ss_pred HhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007043 331 WNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDI 383 (620)
Q Consensus 331 W~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~ 383 (620)
+......|=..|...+.+...+.++...+-..+..++...+....+..+|...
T Consensus 511 ~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777666666666666666665555555555444443
No 204
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.49 E-value=6.5e+02 Score=25.38 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHH
Q 007043 318 DRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEAN--VAK 395 (620)
Q Consensus 318 erl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean--~a~ 395 (620)
.-+++-+-........-+..+=-+|+..++.+..++..+.+++...+..+.+.........++...-..|+.--+ -|+
T Consensus 9 ~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr 88 (219)
T TIGR02977 9 DIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR 88 (219)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 334555556667777788888889999999999999999999999888887777666666666666555544211 133
Q ss_pred HHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhccc
Q 007043 396 EASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKES 455 (620)
Q Consensus 396 Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k~~ 455 (620)
+|+. ....-+..+..+..+++.++..=.....+|.+|..-|.++-+++.
T Consensus 89 ~Al~-----------~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 89 AALI-----------EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 111223445556666666666666666667777777777665544
No 205
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.28 E-value=7.9e+02 Score=26.25 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007043 142 DSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLK 221 (620)
Q Consensus 142 eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~ 221 (620)
+.+.-..+||+..+.-|..++..+...+.+...+-.+. ........|..|+.++..++...+.....--...-.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~------~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKA------QSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 55666778888888888888888888888754442110 011223345555555555554443332111011224
Q ss_pred HhhHHHHHHHHHHHH
Q 007043 222 VRSLLEEVRFLKNEL 236 (620)
Q Consensus 222 i~~L~EEk~~L~~EL 236 (620)
|..+..++..|...|
T Consensus 244 v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 244 VPSLQARIKSLRKQI 258 (362)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444454554444443
No 206
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=5.7e+02 Score=24.47 Aligned_cols=58 Identities=10% Similarity=0.186 Sum_probs=44.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhh
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTM 62 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~e 62 (620)
||+++...| ....+|....-.|..+=-+|+++++|-+|.+--=.+|-+.+.+......
T Consensus 8 ~q~~l~q~Q----qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk 65 (119)
T COG1382 8 VQAQLAQLQ----QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVK 65 (119)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhh
Confidence 345555444 5678888888999999999999999999988777777777777765544
No 207
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.67 E-value=7.4e+02 Score=25.74 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=71.4
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHH--hhhHHHHHHHHhhHHHHHHHHHhhHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKL--TSTEAELEVKKAESEELKLKLKNIEDS 298 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekl--l~~Q~ElE~a~aqie~Lk~~Lk~teek 298 (620)
.++..+.+..++.+=.+.+-...-|+-......-..|+- .|...+|| ..+++-+..++.++.++......+...
T Consensus 106 ~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~k----kr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~ 181 (234)
T cd07664 106 LFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQK----KREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERD 181 (234)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999998888888877777666666655543 33444555 356778889999999999999999999
Q ss_pred HHHHHHHhhhHHHHHH
Q 007043 299 HKLQLDELKKEADLYR 314 (620)
Q Consensus 299 ye~mLDEa~~E~~~lk 314 (620)
|+.|.+-.+.|+.++.
T Consensus 182 fe~Is~~~k~El~rFe 197 (234)
T cd07664 182 FEQISKTIRKEVGRFE 197 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888888885
No 208
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.55 E-value=8.1e+02 Score=26.15 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=11.4
Q ss_pred CCCCccccccccccc
Q 007043 482 NGNGKKLFESFSISV 496 (620)
Q Consensus 482 ~~~~k~~~~~~S~~l 496 (620)
+++.|-+..+|||++
T Consensus 176 nIdpkdp~~~FsF~v 190 (246)
T KOG4657|consen 176 NIDPKDPTREFSFTV 190 (246)
T ss_pred ccCCCCCccceeeEE
Confidence 667788888888853
No 209
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=26.18 E-value=9e+02 Score=26.56 Aligned_cols=112 Identities=16% Similarity=0.230 Sum_probs=72.8
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHH
Q 007043 278 LEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHE 357 (620)
Q Consensus 278 lE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~ 357 (620)
||..-..+.+.-.+| .+|++||.| |+ ..++-+++.-|.+..-.-..||..|+.-+.+.=+|...+-...-
T Consensus 155 IEKSvKDLqRctvSL----~RYr~~lke---e~---d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRq 224 (302)
T PF07139_consen 155 IEKSVKDLQRCTVSL----TRYRVVLKE---EM---DSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQ 224 (302)
T ss_pred HHHHHHHHHHHHHHH----HhhhhHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666 689999987 44 46788888889998999999999999887777666554433322
Q ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007043 358 AMLESLK-EAENTTRAAKEETLKLRDILKQAINEANVAKEASGI 400 (620)
Q Consensus 358 rL~esl~-~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~ 400 (620)
+-.+.|+ -+.--.+-.-+....||--+|+.|.|=.| -|.||-
T Consensus 225 kkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~-de~lg~ 267 (302)
T PF07139_consen 225 KKAEELKRLTDRASQMSEEQLAELRADIKHFVSERKY-DEELGR 267 (302)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhh-HHHHhH
Confidence 2222221 12222233345667888888888887765 444443
No 210
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.03 E-value=2.7e+02 Score=25.28 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHH
Q 007043 4 YMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSE 49 (620)
Q Consensus 4 ~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~e 49 (620)
++.+++.+....+.+...+...=.-+-.....||-.|..||.+|+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677778888888888888888888888888899999999999965
No 211
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=25.80 E-value=5.7e+02 Score=24.16 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhh-HHHHHHHHHHHHHHH
Q 007043 284 ESEELKLKLKNIEDSHKLQLDELKKEADLYRNT-ADRLTLEAEESLLAW 331 (620)
Q Consensus 284 qie~Lk~~Lk~teekye~mLDEa~~E~~~lk~t-verl~~Ea~~s~~eW 331 (620)
.++.++..+......|+..|..|+.|+..+... ++.-+.+++.-...|
T Consensus 49 ~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A 97 (141)
T PRK08476 49 KVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAK 97 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556677777777777776665443 344444444444444
No 212
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=25.71 E-value=6.4e+02 Score=24.71 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=54.0
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
++..+.+..+...=++.+.....+.--..+.+...|.-.-.....++..-...+.-++.+..++..+......++.+|+.
T Consensus 109 l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~ 188 (236)
T PF09325_consen 109 LGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEE 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555444444444444333333333333332222222222211223566777888888888888899999999
Q ss_pred HHHHhhhHHHHHHhh
Q 007043 302 QLDELKKEADLYRNT 316 (620)
Q Consensus 302 mLDEa~~E~~~lk~t 316 (620)
+...++.|++.|...
T Consensus 189 is~~~k~E~~rf~~~ 203 (236)
T PF09325_consen 189 ISENIKKELERFEKE 203 (236)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888877654
No 213
>smart00150 SPEC Spectrin repeats.
Probab=25.50 E-value=3.7e+02 Score=21.79 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=40.5
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhh
Q 007043 277 ELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETR 337 (620)
Q Consensus 277 ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~ 337 (620)
.+.....++...+..+.........++....++.+-+...++.|...|..-...|..+...
T Consensus 39 ~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 99 (101)
T smart00150 39 KHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQK 99 (101)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555555566666556677788888899988888888877776543
No 214
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.77 E-value=6.6e+02 Score=24.54 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHHHHHhhHHHHH-HHHHhhHHHHHHHHHHhhhHHHHHHhh
Q 007043 275 EAELEVKKAESEELK-LKLKNIEDSHKLQLDELKKEADLYRNT 316 (620)
Q Consensus 275 Q~ElE~a~aqie~Lk-~~Lk~teekye~mLDEa~~E~~~lk~t 316 (620)
+..+..|+.++.... ..-..++.-+..++++|+.+++.+...
T Consensus 82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~ 124 (184)
T CHL00019 82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENY 124 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433322 233344555666677777666655443
No 215
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.58 E-value=6.5e+02 Score=31.03 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=83.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHH----HhhHHHHHHHHHhhHHHHHH----H----HHHhhhHHHHH
Q 007043 246 NQKALDDLALALKEVALEASQAKEKLTSTEAELEVK----KAESEELKLKLKNIEDSHKL----Q----LDELKKEADLY 313 (620)
Q Consensus 246 sKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a----~aqie~Lk~~Lk~teekye~----m----LDEa~~E~~~l 313 (620)
-=.-+|...+-|-.|+.-. ..|.||--| |.+.-.|+--|+-.+..++. . --+-++|+..|
T Consensus 361 LitEvE~cislLPav~g~t--------niq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sL 432 (861)
T PF15254_consen 361 LITEVEACISLLPAVSGST--------NIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSL 432 (861)
T ss_pred HHHHHHHHHHhhhhhhccc--------cchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHH
Confidence 3455777888888887643 345554433 33444455555555444432 1 02346777777
Q ss_pred HhhHHHHHHHHHHHHH---HHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHH
Q 007043 314 RNTADRLTLEAEESLL---AWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKE----ETLKLRDILKQ 386 (620)
Q Consensus 314 k~tverl~~Ea~~s~~---eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~e----E~~kLrd~LKq 386 (620)
..----|+....++.- ..++|=-.++- -+.+.+.||-|+...+++.+.+.-..++ |.++++=-+.+
T Consensus 433 qSlN~~Lq~ql~es~k~~e~lq~kneellk-------~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~e 505 (861)
T PF15254_consen 433 QSLNMSLQNQLQESLKSQELLQSKNEELLK-------VIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEE 505 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6655555555555542 22333222222 2334566777777777666655544432 44444444455
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHH
Q 007043 387 AINEANVAKEASGIARAENARLQDALHAKEEALNFI 422 (620)
Q Consensus 387 a~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i 422 (620)
|+......+=.|+.|.-||+-|.=.|--++.++.-|
T Consensus 506 al~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 506 ALVNVKSLQFKLEASEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred HHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 555555555555555555555555544444443333
No 216
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.21 E-value=1.6e+02 Score=31.05 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHH
Q 007043 373 AKEETLKLRDIL 384 (620)
Q Consensus 373 ~~eE~~kLrd~L 384 (620)
+.+||.+||..+
T Consensus 71 l~~EN~~Lr~e~ 82 (283)
T TIGR00219 71 LEYENYKLRQEL 82 (283)
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 217
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.13 E-value=7.1e+02 Score=29.13 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHh--hhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHH
Q 007043 283 AESEELKLKLKNIEDSHKLQLDEL--KKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAML 360 (620)
Q Consensus 283 aqie~Lk~~Lk~teekye~mLDEa--~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~ 360 (620)
..+++++..++.....|....++. +.+++-|++.|+.++. +-...+.-|.++-+ |.++|.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~-----------~~ik~p~~i~~~~~-------e~d~lk 225 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK-----------KDIKNPLELQKIKE-------EFDKLK 225 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh-----------ccCCCHHHHHHHHH-------HHHHHH
Confidence 556666666666666666666665 6677777777777754 12223333344444 444444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhh
Q 007043 361 ESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICREN 426 (620)
Q Consensus 361 esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEn 426 (620)
.-.+..-...+..+.+-...++.+++.+.++..|. ...-.+|+....=..-.+.++.+-.
T Consensus 226 ~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap------~~D~~~L~~~~~~~~~~~~~~~~~L 285 (555)
T TIGR03545 226 KEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAP------QNDLKRLENKYAIKSGDLKNFAVDL 285 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc------HhHHHHHHHHhCCCcccHHHHHHHH
Confidence 44444444445555555566666666555444322 2233355555544455555555543
No 218
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=24.07 E-value=1.3e+02 Score=30.91 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=42.5
Q ss_pred HHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhh
Q 007043 395 KEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSS 452 (620)
Q Consensus 395 ~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~ 452 (620)
+-||..|=.||.+|...+-.|++++.-++.||+.|+. . -+-++-|-.+|...+.
T Consensus 117 R~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~e--l--ae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 117 RKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKE--L--AEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--H--HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHhc
Confidence 4577888889999999999999999999999999984 2 2335666666766663
No 219
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=23.95 E-value=4.7e+02 Score=22.52 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhh
Q 007043 111 HAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFE 159 (620)
Q Consensus 111 ~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLe 159 (620)
=|.++++-|.-.+..+...|.+...|-..+..++......|..++....
T Consensus 4 La~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~ 52 (92)
T PF14712_consen 4 LAEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQ 52 (92)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567899999999999999999999888888888888888877665443
No 220
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.57 E-value=5.3e+02 Score=25.15 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHh
Q 007043 264 ASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEK 334 (620)
Q Consensus 264 AreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~K 334 (620)
-...|.+|.....++..++.|+......|+.... ....++-|+..++.|+...+.....|..+
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~--------~~~d~eeLk~~i~~lq~~~~~~~~~~e~~ 77 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK--------SAKDNEELKKQIEELQAKNKTAKEEYEAK 77 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555555555555544332 23355666777777777777777776654
No 221
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.47 E-value=2.1e+02 Score=26.27 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHH-HHHHHHHhhHHH
Q 007043 11 TLKMTKDRLDAAEKERDRALDELHEMKR-MAQEANMRLSET 50 (620)
Q Consensus 11 ~Lkkakeql~~~e~Ek~r~~dEL~eakk-~AdEan~kL~ea 50 (620)
+|...+.+-..++.++.++=.||.+.-- +-+|||.+...|
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~a 42 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADA 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888899999999999988754 459999988666
No 222
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.38 E-value=4e+02 Score=27.56 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007043 338 FVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRA 372 (620)
Q Consensus 338 fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~ 372 (620)
|-.+|-..++||..++.|+..|.++...+..++.+
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ 164 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEV 164 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777788888888888777775555444443
No 223
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.98 E-value=8.7e+02 Score=25.24 Aligned_cols=90 Identities=21% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh-----------------hhHHHHHHHHhhHHH
Q 007043 225 LLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLT-----------------STEAELEVKKAESEE 287 (620)
Q Consensus 225 L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll-----------------~~Q~ElE~a~aqie~ 287 (620)
..+.-..|..||..+..+-+++||--+.+-..-..+-..+++|-..+. ..+.+.+-++.....
T Consensus 115 ~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~ 194 (241)
T cd07656 115 CREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSE 194 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888888888887765544444444444444432 133555677777777
Q ss_pred HHHHHHhhHHHHHHHHHHhhhHHHHHH
Q 007043 288 LKLKLKNIEDSHKLQLDELKKEADLYR 314 (620)
Q Consensus 288 Lk~~Lk~teekye~mLDEa~~E~~~lk 314 (620)
-...+.++..-|-..|.-||....-|-
T Consensus 195 ~~~k~~~akNeYll~l~~aN~~~~~yy 221 (241)
T cd07656 195 AKLKCTKARNEYLLNLAAANATIHKYF 221 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888887776655543
No 224
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.87 E-value=7.1e+02 Score=24.21 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=23.7
Q ss_pred hhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhh
Q 007043 404 ENARLQDALHAKEEALNFICRENEDLKMNEAA 435 (620)
Q Consensus 404 En~~LKd~L~dKEneLq~i~qEne~Lr~~Eaa 435 (620)
...+..-.+..-+..+..|.+||+.||.+=.+
T Consensus 69 ~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t 100 (135)
T TIGR03495 69 QLAQARALLAQREQRIERLKRENEDLRRWADT 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence 33345556777788899999999999976443
No 225
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=22.74 E-value=1.2e+03 Score=26.85 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=67.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 007043 189 GTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAK 268 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaK 268 (620)
.+++.+..+|-+|.++.+++.++-. |.+...+||..++.+.+ -|-.+..+++
T Consensus 78 di~~qlr~~rtel~~a~~~k~~~e~--------------er~~~~~El~~~r~e~~--------------~v~~~~~~a~ 129 (499)
T COG4372 78 DIRPQLRALRTELGTAQGEKRAAET--------------EREAARSELQKARQERE--------------AVRQELAAAR 129 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 3566677777777777766644422 66777788888877654 2446777888
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHh
Q 007043 269 EKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 269 ekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa 306 (620)
..|+.+|-++-+...|..+|..-|++.-+-|.-+..++
T Consensus 130 ~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~ 167 (499)
T COG4372 130 QNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQA 167 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999888888776543
No 226
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.72 E-value=8.8e+02 Score=25.21 Aligned_cols=132 Identities=23% Similarity=0.231 Sum_probs=100.0
Q ss_pred HHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHhH
Q 007043 323 EAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEAN--VAKEASGI 400 (620)
Q Consensus 323 Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean--~a~Eale~ 400 (620)
.+-.....-...+.-+=-.|+..+.++..+++...+++...+..+.+.........++...=..|+.=.| -|.+++
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al-- 91 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREAL-- 91 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--
Confidence 3333344444555555568999999999999999999999999999888888888888887666665322 133333
Q ss_pred HHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhcccchh
Q 007043 401 ARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKESKLE 458 (620)
Q Consensus 401 AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k~~~~e 458 (620)
.+-..|.+.+.--+..++....-.+.||.+-.....||.+|...+....++.....
T Consensus 92 --~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 92 --EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777787888888888899999999999999999999998888877766543
No 227
>PF13514 AAA_27: AAA domain
Probab=22.64 E-value=1.6e+03 Score=28.15 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=62.4
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHh--hhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEEN--NQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDS 298 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEK--sKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teek 298 (620)
.|..+..+...+...+..-...-.- .....++....|...-..+++....+...+..++.++.+++.+...+...+..
T Consensus 751 ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 830 (1111)
T PF13514_consen 751 RIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAE 830 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444333222 12233467778888888899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 007043 299 HKLQLDELK 307 (620)
Q Consensus 299 ye~mLDEa~ 307 (620)
+..++..+.
T Consensus 831 l~~L~~~a~ 839 (1111)
T PF13514_consen 831 LAELLEQAG 839 (1111)
T ss_pred HHHHHHhcc
Confidence 988887553
No 228
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.55 E-value=1.3e+03 Score=27.20 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=49.9
Q ss_pred hHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhh
Q 007043 101 TLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDL 180 (620)
Q Consensus 101 el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~ 180 (620)
.-.+...|..-++.+++.+-. ..++.+.+.+.. ..+-| ..||...+..|..++.++...+.+...+-.
T Consensus 162 ~~~dP~~Aa~iaN~la~~Y~~--~~~~~k~~~~~~----a~~~L---~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~--- 229 (754)
T TIGR01005 162 RSEDPKLAAAIPDAIAAAYIA--GQGAAKSESNTA----AADFL---APEIADLSKQSRDAEAEVAAYRAQSDLLMG--- 229 (754)
T ss_pred ecCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCccc---
Confidence 344566666666777777643 233443333332 33333 456666777888888888888886544311
Q ss_pred hhcccCcccchhhHHHHHHHHHHHHHH
Q 007043 181 NASQSGLAGTNETVEFLNSELQLAKDK 207 (620)
Q Consensus 181 ~~~~~e~~~lq~~ve~Lksele~~~e~ 207 (620)
+ ........+..|...|..++..
T Consensus 230 ---~-~~~~~~~~L~~l~~ql~~a~~~ 252 (754)
T TIGR01005 230 ---N-NATLATQQLAELNTELSRARAN 252 (754)
T ss_pred ---C-CccchHHHHHHHHHHHHHHHHH
Confidence 1 1112235566666666555443
No 229
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.41 E-value=1.5e+03 Score=27.74 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=96.9
Q ss_pred HHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHH---HHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Q 007043 254 ALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIED---SHKLQLDELKKEADLYRNTADRLTLEAEESLLA 330 (620)
Q Consensus 254 A~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~tee---kye~mLDEa~~E~~~lk~tverl~~Ea~~s~~e 330 (620)
++-+.++++-.++..+.|-.-+...-.+.+|+.+|+..+.+..+ +...+|.-...+.+.|
T Consensus 376 ~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reql----------------- 438 (716)
T KOG4593|consen 376 VAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQL----------------- 438 (716)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHH-----------------
Confidence 44556677888888888888888888899999998877655433 3333333333332222
Q ss_pred HhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhH
Q 007043 331 WNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQD 410 (620)
Q Consensus 331 W~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd 410 (620)
.|+|.-+...=-+..+.-.++.+++.. -....+++..-+|--....+...-.+..+|-++--|.+
T Consensus 439 -----k~lV~~~~k~~~e~e~s~~~~~~~i~~----------~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e 503 (716)
T KOG4593|consen 439 -----KGLVQKVDKHSLEMEASMEELYREITG----------QKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLRE 503 (716)
T ss_pred -----HHHHHHHHHhhHhhhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 234444444333333333333333322 23344455555555555555555566777777777777
Q ss_pred hHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhc
Q 007043 411 ALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSK 453 (620)
Q Consensus 411 ~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k 453 (620)
.+.+=..++..+.+||+.|| ++=-+..|..-.++..++
T Consensus 504 ~i~~~~ke~~~Le~En~rLr-----~~~e~~~l~gd~~~~~~r 541 (716)
T KOG4593|consen 504 KIEQYLKELELLEEENDRLR-----AQLERRLLQGDYEENITR 541 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhccc
Confidence 77777788888999999999 333355555555544433
No 230
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.35 E-value=1.7e+03 Score=28.44 Aligned_cols=218 Identities=18% Similarity=0.212 Sum_probs=117.6
Q ss_pred HHhhhhhHHHHhhhHHHhhh-------hHHH---------HhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHH
Q 007043 88 LVEKDASLDELKGTLSNAKS-------SEAH---------AMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQL 151 (620)
Q Consensus 88 l~E~e~~ie~L~~el~~Ak~-------aes~---------a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqL 151 (620)
+.++=..|+.|+.||.+|+. -+.| ...++.+...+++.++.+|....+.-...++.=.-.++++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45556678888888888874 2233 2345566666666777777676666666677777889999
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHH
Q 007043 152 EQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRF 231 (620)
Q Consensus 152 E~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~ 231 (620)
+.++.-|+..-.++.++++.+..+..+ |..+ +.+.+.++..+...... ...-....+.-..++..
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~-----------l~~~-e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKAT-----------LKEE-EEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSS 550 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 999999999999999999887666542 1111 11111122221111111 00111223333445555
Q ss_pred HHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhH-HHHHHHHhhH-----------HHHHHHHHhhHHHH
Q 007043 232 LKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTE-AELEVKKAES-----------EELKLKLKNIEDSH 299 (620)
Q Consensus 232 L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q-~ElE~a~aqi-----------e~Lk~~Lk~teeky 299 (620)
|-.-|..-.-.....+.+.+++..-|.+...-....-.-.+..| .-+..-.++. +.++..+.....-|
T Consensus 551 l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~ 630 (1041)
T KOG0243|consen 551 LFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDIL 630 (1041)
T ss_pred HHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHH
Confidence 55555555555666777777777766654433332222222222 1222222222 44444444444455
Q ss_pred HHHHHHhhhHHHHHHhhHHHH
Q 007043 300 KLQLDELKKEADLYRNTADRL 320 (620)
Q Consensus 300 e~mLDEa~~E~~~lk~tverl 320 (620)
-..++..+..+..+++.++-+
T Consensus 631 ~~~~e~~q~~~~~~k~~~~s~ 651 (1041)
T KOG0243|consen 631 SEVLESLQQLQEVLKKDSESC 651 (1041)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 555555555555555544433
No 231
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.26 E-value=1.4e+03 Score=27.23 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHh
Q 007043 115 LYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKK 174 (620)
Q Consensus 115 l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~ 174 (620)
-+..++..+..++.+++.... -...+..+.+-.+.+..+|.+++--|+.|+.-|..
T Consensus 350 ~~~~l~~~~~q~~~e~~~~~~----~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 350 EIKMLKSSLKQLEEELEEKEA----ENEELEEELKLKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334444444444444443222 22344555555566666666666666666655443
No 232
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=21.99 E-value=8.6e+02 Score=24.83 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=72.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHH
Q 007043 153 QTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFL 232 (620)
Q Consensus 153 ~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L 232 (620)
.....|.+.+.+++.|+..+..|......... ...+|..|+-++..+...++..+..-+ ...+.|+..|
T Consensus 51 ~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~-----qe~eI~~Le~e~~~~~~e~~~~l~~~~------~qfl~EK~~L 119 (206)
T PF14988_consen 51 ELQDQLLQKEKEQAKLQQELQALKEFRRLKEQ-----QEREIQTLEEELEKMRAEHAEKLQEAE------SQFLQEKARL 119 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 33345666777788888888888765322222 356777777777777666655444332 3457799999
Q ss_pred HHHH---hHhHHHHHhhhh-----------hHHHHHHHHHHHhHHHHHHHHHHhhhH
Q 007043 233 KNEL---KLVTGAEENNQK-----------ALDDLALALKEVALEASQAKEKLTSTE 275 (620)
Q Consensus 233 ~~EL---~~a~~eEEKsKK-----------AMEdLA~AL~EVS~EAreaKekll~~Q 275 (620)
..++ ....-++...+. |...+.-.=+.|-.|-++.+..|+.--
T Consensus 120 Eke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~ 176 (206)
T PF14988_consen 120 EKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLI 176 (206)
T ss_pred HHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8866 555555665555 777777777777777777766665443
No 233
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.88 E-value=8.4e+02 Score=24.93 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=40.3
Q ss_pred HHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHh
Q 007043 95 LDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKK 174 (620)
Q Consensus 95 ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~ 174 (620)
++.+.......-.+...+....+.|...-+.|..++...+.- .++|.. +.++....+..-+.+|++|+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e----~e~L~~---~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLERE----IENLEV---YNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555666667777777777777666544431 122222 2333333444555566666666555
Q ss_pred hhh
Q 007043 175 LES 177 (620)
Q Consensus 175 LE~ 177 (620)
++.
T Consensus 96 ~~~ 98 (251)
T PF11932_consen 96 IEE 98 (251)
T ss_pred HHH
Confidence 554
No 234
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.84 E-value=7.1e+02 Score=23.91 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHhhh
Q 007043 317 ADRLTLEAEESLLAWNEKET 336 (620)
Q Consensus 317 verl~~Ea~~s~~eW~~KE~ 336 (620)
+.++..++......|..+=+
T Consensus 147 ~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 147 KEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888876543
No 235
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.32 E-value=5.3e+02 Score=22.18 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 373 AKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 373 ~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
+..++..||.-|.++.-.+.+-......-+.|+...=-.|.++=.+...++.||+.|+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888877766655555555555444444444444444555555444
No 236
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.28 E-value=8.5e+02 Score=24.53 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=10.2
Q ss_pred hhHHHHHHhhHHHHHHHHHHHH
Q 007043 307 KKEADLYRNTADRLTLEAEESL 328 (620)
Q Consensus 307 ~~E~~~lk~tverl~~Ea~~s~ 328 (620)
+..+.-++...+.++.......
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455544444443
No 237
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=21.24 E-value=9.9e+02 Score=25.29 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=31.0
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhh
Q 007043 271 LTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELK 307 (620)
Q Consensus 271 ll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~ 307 (620)
-.....+++-++..++.-+.....++..|+..|...+
T Consensus 163 ~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln 199 (258)
T cd07680 163 QSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVG 199 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999999999999999999988743
No 238
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=1.5e+03 Score=27.36 Aligned_cols=107 Identities=26% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHH----------------HHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHh
Q 007043 252 DLALALKEVALEAS----------------QAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRN 315 (620)
Q Consensus 252 dLA~AL~EVS~EAr----------------eaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~ 315 (620)
.|+.||..|-.+.+ .....+.....-++....++..|+.-+ ++-+.+|.-|++
T Consensus 389 ~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~-----------ee~k~eie~L~~ 457 (652)
T COG2433 389 PLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKREL-----------EELKREIEKLES 457 (652)
T ss_pred cHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHhHhhhh-HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007043 316 TADRLTLEAEESLLAWNEKETR-FVDCIKRAEEERDGAQQEHEAMLESLKEAENTTR 371 (620)
Q Consensus 316 tverl~~Ea~~s~~eW~~KE~~-fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~ 371 (620)
-+++++.+.. ...|..+|.. .=..|...+-++..-...++.|-.-|...+.+..
T Consensus 458 ~l~~~~r~~~--~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 458 ELERFRREVR--DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 239
>PF14992 TMCO5: TMCO5 family
Probab=21.10 E-value=9.5e+02 Score=26.09 Aligned_cols=112 Identities=14% Similarity=0.227 Sum_probs=74.3
Q ss_pred hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HH-------HHHHHH---------H-
Q 007043 336 TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDI------LK-------QAINEA---------N- 392 (620)
Q Consensus 336 ~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~------LK-------qa~~Ea---------n- 392 (620)
-+|+--|...|+.+.++..|++++...+..-+.+.+.+-+-..-|++. |. +-+.|. +
T Consensus 21 q~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 21 QSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 367777888888888888888888887777777766664444444221 10 000111 0
Q ss_pred -----HHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHH
Q 007043 393 -----VAKEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLL 447 (620)
Q Consensus 393 -----~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL 447 (620)
.++-++...+....++...+...|+.+-.+-..+....--+..+-.-|++|+.-|
T Consensus 101 ~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 101 QCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred CCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1445566666666688888888888888887777776666666667788888877
No 240
>PF13514 AAA_27: AAA domain
Probab=21.02 E-value=1.7e+03 Score=27.90 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=50.0
Q ss_pred HHHHHHhhhhhHHHHh--------hhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhh------HHhhhhhHHHHHH
Q 007043 84 WEIKLVEKDASLDELK--------GTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKES------EKKMFDSFAAQTK 149 (620)
Q Consensus 84 ~E~kl~E~e~~ie~L~--------~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~es------E~~~~eSL~sqtK 149 (620)
+...+...+..+..|. .+|..|+..+..++.+..-...-+..+|.-+..++.. +..-.--+....-
T Consensus 478 ~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~~~aD~laD~~~~~a~~~a~~~~l~~ 557 (1111)
T PF13514_consen 478 LEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAVREADELADRRLREAERAARLAQLRA 557 (1111)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554 3477788888888777444455556666666555442 1122223334444
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHhhhhh
Q 007043 150 QLEQTMIVFEESKFEINSLREKLKKLESR 178 (620)
Q Consensus 150 qLE~tk~lLeeaesEIasLkekv~~LE~~ 178 (620)
+++.+...+......++.+......|...
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1111)
T PF13514_consen 558 RLEEARARLARAQARLAAAEAALAALEAA 586 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554433
No 241
>PRK15396 murein lipoprotein; Provisional
Probab=20.59 E-value=4.5e+02 Score=23.39 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHH
Q 007043 3 QYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSE 49 (620)
Q Consensus 3 ~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~e 49 (620)
+++.+++.+....+.+...+...-.-+......|+-.|.-||.+|+.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 242
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.56 E-value=1.5e+03 Score=27.07 Aligned_cols=53 Identities=26% Similarity=0.286 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhh
Q 007043 125 ELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLES 177 (620)
Q Consensus 125 ~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~ 177 (620)
+|..+|++-..+--.-+++|..+--.|+.--..++.-..-+.+|+++...|..
T Consensus 221 Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~ 273 (581)
T KOG0995|consen 221 ELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQD 273 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHh
Confidence 34444544444444444444444444443333334444556666666665643
No 243
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.48 E-value=7.9e+02 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhh
Q 007043 226 LEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTST 274 (620)
Q Consensus 226 ~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~ 274 (620)
.+.-..|..||..+..+-+|+||--+..-. .+.++++|+-.+
T Consensus 116 ~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~-------~~~~ar~K~~~a 157 (264)
T cd07654 116 TEQLQRAQAEVQQTVRELSKSRKTYFEREQ-------VAHLAREKAADV 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHH
Confidence 567788889999999999999999864433 445556665543
No 244
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.31 E-value=9.8e+02 Score=24.88 Aligned_cols=114 Identities=20% Similarity=0.353 Sum_probs=80.8
Q ss_pred HHHHHhHhHHHHHhhhhhHHHHHHHHHHHhH----HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhh
Q 007043 232 LKNELKLVTGAEENNQKALDDLALALKEVAL----EASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELK 307 (620)
Q Consensus 232 L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~----EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~ 307 (620)
|..-.+.|++.-...+. ...+||...++ ..-....+|-....+++..+..+++++.-+...++-=+.+++|=.
T Consensus 26 lvdrVe~Ardsq~eaqe---QF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe 102 (201)
T PF11172_consen 26 LVDRVEDARDSQQEAQE---QFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWE 102 (201)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555443 34444444333 334567777778888888888888888888888888888888888
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHh
Q 007043 308 KEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERD 350 (620)
Q Consensus 308 ~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~ 350 (620)
.|++.|.+. .|+.....-...-+.+=..++..++++|.-+.
T Consensus 103 ~EL~~Y~~~--sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~ 143 (201)
T PF11172_consen 103 QELDQYSNA--SLRRASEQKLAETRRRYAQLIKAMRRAESKMQ 143 (201)
T ss_pred HHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888776 66666666667777777778888888776543
No 245
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.20 E-value=1.4e+03 Score=26.68 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=10.1
Q ss_pred cchhhHHHHHHHHHHHH
Q 007043 189 GTNETVEFLNSELQLAK 205 (620)
Q Consensus 189 ~lq~~ve~Lksele~~~ 205 (620)
-....+..++..++...
T Consensus 297 l~~~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 297 LIPNLLDSTKAQLQKEE 313 (650)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34566666766666554
Done!