Query 007043
Match_columns 620
No_of_seqs 53 out of 55
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.3 0.0028 9.7E-08 58.3 39.4 24 12-35 8-31 (284)
2 1c1g_A Tropomyosin; contractIl 98.0 0.011 3.7E-07 54.4 40.5 11 120-130 19-29 (284)
3 1i84_S Smooth muscle myosin he 97.6 8.3E-05 2.8E-09 87.3 8.7 31 6-36 860-890 (1184)
4 1i84_S Smooth muscle myosin he 97.5 0.00026 8.8E-09 83.2 10.3 49 83-131 882-930 (1184)
5 3u1c_A Tropomyosin alpha-1 cha 95.6 0.21 7.1E-06 43.7 12.6 90 77-177 11-100 (101)
6 3u59_A Tropomyosin beta chain; 95.4 0.27 9.1E-06 42.8 12.5 90 77-177 11-100 (101)
7 3o0z_A RHO-associated protein 93.9 4.7 0.00016 38.7 18.1 149 121-301 6-154 (168)
8 3vkg_A Dynein heavy chain, cyt 93.1 15 0.0005 48.4 26.1 80 77-160 1901-1980(3245)
9 3na7_A HP0958; flagellar bioge 92.0 10 0.00034 37.3 21.2 6 226-231 96-101 (256)
10 3na7_A HP0958; flagellar bioge 91.7 11 0.00037 37.1 20.8 74 221-294 12-85 (256)
11 2v71_A Nuclear distribution pr 88.8 18 0.00063 35.1 18.9 110 338-457 36-149 (189)
12 3vkg_A Dynein heavy chain, cyt 87.3 34 0.0012 45.3 21.9 55 366-420 2019-2073(3245)
13 3oja_B Anopheles plasmodium-re 84.0 12 0.00042 39.7 13.6 126 256-392 457-582 (597)
14 2b9c_A Striated-muscle alpha t 80.8 19 0.00066 33.4 12.0 123 1-178 1-123 (147)
15 2dfs_A Myosin-5A; myosin-V, in 80.5 26 0.0009 41.5 15.8 61 220-290 984-1044(1080)
16 2x3v_A Syndapin I, protein kin 79.9 37 0.0013 33.8 14.6 81 226-306 133-213 (337)
17 2v71_A Nuclear distribution pr 77.9 53 0.0018 31.9 21.5 101 263-370 18-118 (189)
18 2w6b_A RHO guanine nucleotide 77.8 8.6 0.00029 31.0 7.3 49 334-385 4-52 (56)
19 1t6f_A Geminin; coiled-coil, c 76.5 2.9 9.9E-05 31.1 3.9 34 397-430 1-34 (37)
20 1wlq_A Geminin; coiled-coil; 2 73.4 4.1 0.00014 35.2 4.7 36 395-430 30-65 (83)
21 2dfs_A Myosin-5A; myosin-V, in 71.9 1.1E+02 0.0039 36.3 17.9 23 340-362 1023-1045(1080)
22 2efr_A General control protein 71.6 69 0.0023 30.2 17.5 89 217-305 39-127 (155)
23 3mq7_A Bone marrow stromal ant 70.1 58 0.002 29.8 11.6 79 352-433 30-108 (121)
24 2efr_A General control protein 69.6 76 0.0026 29.9 21.4 102 68-169 49-153 (155)
25 1uii_A Geminin; human, DNA rep 69.5 5.8 0.0002 34.3 4.8 36 395-430 38-73 (83)
26 3tnu_A Keratin, type I cytoske 69.0 63 0.0021 28.9 11.8 71 255-325 31-101 (131)
27 3abh_A Pacsin2, protein kinase 68.9 47 0.0016 32.7 12.0 79 228-306 144-222 (312)
28 3tnu_B Keratin, type II cytosk 68.8 64 0.0022 28.7 12.6 69 257-325 31-99 (129)
29 3ol1_A Vimentin; structural ge 65.9 73 0.0025 28.3 11.7 53 6-58 16-68 (119)
30 3o0z_A RHO-associated protein 65.4 99 0.0034 29.7 19.2 126 221-389 7-132 (168)
31 3aco_A Pacsin2, protein kinase 62.2 40 0.0014 34.0 10.2 79 228-306 144-222 (350)
32 3i00_A HIP-I, huntingtin-inter 61.7 31 0.0011 31.2 8.3 45 284-328 16-60 (120)
33 3haj_A Human pacsin2 F-BAR; pa 61.6 80 0.0027 33.6 12.8 79 228-306 137-215 (486)
34 2no2_A HIP-I, huntingtin-inter 60.6 82 0.0028 27.8 10.7 57 143-203 9-65 (107)
35 2zxx_A Geminin; coiled-coil, c 60.5 22 0.00077 30.4 6.7 36 395-430 26-61 (79)
36 3oja_B Anopheles plasmodium-re 59.4 1E+02 0.0035 32.7 13.2 33 415-447 535-567 (597)
37 3a7p_A Autophagy protein 16; c 58.7 1.2E+02 0.004 28.8 11.9 75 338-412 59-133 (152)
38 3trt_A Vimentin; cytoskeleton, 52.8 90 0.0031 25.2 9.3 69 252-327 6-75 (77)
39 2i1j_A Moesin; FERM, coiled-co 50.7 11 0.00036 41.7 4.0 30 222-253 513-542 (575)
40 2efl_A Formin-binding protein 50.3 1.8E+02 0.0061 27.9 19.8 82 226-307 122-203 (305)
41 3hnw_A Uncharacterized protein 48.6 92 0.0031 28.6 9.3 38 263-300 69-106 (138)
42 2wvr_A Geminin; DNA replicatio 48.3 27 0.00093 34.5 6.0 53 395-451 107-159 (209)
43 3tnu_B Keratin, type II cytosk 46.0 1.6E+02 0.0055 26.1 11.5 38 303-340 31-68 (129)
44 2oto_A M protein; helical coil 45.9 1.8E+02 0.006 26.6 17.1 90 366-455 55-145 (155)
45 2efk_A CDC42-interacting prote 45.8 2.1E+02 0.0073 27.5 20.8 83 225-307 114-196 (301)
46 1x8y_A Lamin A/C; structural p 45.6 39 0.0013 28.5 5.9 50 275-324 2-51 (86)
47 1gk4_A Vimentin; intermediate 45.4 1.1E+02 0.0036 25.7 8.5 48 277-324 2-49 (84)
48 3tnu_A Keratin, type I cytoske 44.7 1.7E+02 0.0058 26.1 10.8 29 302-330 32-60 (131)
49 3swk_A Vimentin; cytoskeleton, 44.5 1.4E+02 0.0047 25.3 9.1 41 13-53 3-43 (86)
50 3cvf_A Homer-3, homer protein 43.5 79 0.0027 26.9 7.4 52 117-168 23-74 (79)
51 1urf_A Protein kinase C-like 1 42.7 66 0.0023 27.7 6.7 59 77-135 10-71 (81)
52 1ic2_A Tropomyosin alpha chain 42.6 1.4E+02 0.0049 24.6 10.2 63 267-333 4-66 (81)
53 2fxo_A Myosin heavy chain, car 41.7 1.9E+02 0.0065 25.8 14.3 51 83-133 38-88 (129)
54 2zxx_A Geminin; coiled-coil, c 40.9 85 0.0029 26.8 7.2 36 338-373 39-74 (79)
55 3a7p_A Autophagy protein 16; c 40.8 2.2E+02 0.0076 26.9 10.7 51 407-457 86-140 (152)
56 4e61_A Protein BIM1; EB1-like 40.6 34 0.0012 30.7 4.9 38 141-178 3-40 (106)
57 3cve_A Homer protein homolog 1 40.2 1E+02 0.0034 25.9 7.4 50 117-166 17-66 (72)
58 3ghg_A Fibrinogen alpha chain; 38.3 2.5E+02 0.0084 31.5 12.1 96 86-206 57-152 (562)
59 3mqp_B Phorbol-12-myristate-13 36.1 14 0.00049 25.2 1.4 12 598-609 10-21 (25)
60 2zqm_A Prefoldin beta subunit 34.5 1.6E+02 0.0054 24.9 8.1 43 2-44 5-47 (117)
61 2b5u_A Colicin E3; high resolu 34.5 5.3E+02 0.018 28.8 19.5 75 271-353 323-408 (551)
62 3i2w_A Syndapin, LD46328P; EFC 34.1 77 0.0026 30.8 6.8 30 277-306 171-200 (290)
63 3l4f_A RHO guanine nucleotide 34.0 1.4E+02 0.005 24.4 7.1 49 335-386 2-50 (61)
64 1x79_B RAB GTPase binding effe 32.9 2.7E+02 0.0094 25.0 12.5 62 282-354 5-66 (112)
65 2eqb_B RAB guanine nucleotide 32.9 2.6E+02 0.0088 24.7 12.0 94 197-296 3-96 (97)
66 2v66_B Nuclear distribution pr 32.1 2.8E+02 0.0096 24.9 14.0 48 229-279 54-101 (111)
67 3oja_A Leucine-rich immune mol 31.5 85 0.0029 32.7 7.0 52 1-52 426-477 (487)
68 2jm6_A NOXA; apoptosis, BCL-2, 30.9 23 0.00077 24.7 1.7 13 597-609 9-21 (27)
69 2e7s_A RAB guanine nucleotide 30.8 3.2E+02 0.011 25.4 9.8 37 223-259 42-85 (135)
70 3ol1_A Vimentin; structural ge 30.0 2.9E+02 0.0099 24.4 14.3 42 343-384 65-106 (119)
71 1ic2_A Tropomyosin alpha chain 29.8 2.3E+02 0.008 23.3 10.1 34 259-292 38-71 (81)
72 1avy_A Fibritin, gpwac M; bact 28.9 58 0.002 27.5 4.1 37 335-371 3-39 (74)
73 3htk_A Structural maintenance 27.6 2.1E+02 0.0071 21.9 7.4 34 142-175 26-59 (60)
74 1deq_A Fibrinogen (alpha chain 26.5 6E+02 0.02 27.3 12.3 72 80-172 54-129 (390)
75 1uii_A Geminin; human, DNA rep 25.9 3.2E+02 0.011 23.6 8.5 30 337-366 50-79 (83)
76 3qh9_A Liprin-beta-2; coiled-c 25.5 2.8E+02 0.0096 23.8 7.8 47 379-425 30-76 (81)
77 3s9g_A Protein hexim1; cyclin 24.6 2.1E+02 0.0071 25.6 7.1 50 333-382 37-86 (104)
78 2a1j_A DNA repair endonuclease 24.3 22 0.00074 28.2 0.7 16 591-606 13-28 (63)
79 3m91_A Proteasome-associated A 23.9 2.1E+02 0.0073 22.4 6.3 33 345-377 14-46 (51)
80 1wlq_A Geminin; coiled-coil; 2 23.8 2.9E+02 0.01 23.8 7.7 35 338-372 43-77 (83)
81 2e7s_A RAB guanine nucleotide 23.2 4.5E+02 0.015 24.4 10.2 29 402-430 102-130 (135)
82 1vp7_A Exodeoxyribonuclease VI 21.7 2.3E+02 0.0077 25.1 6.8 51 83-133 31-84 (100)
83 3nmd_A CGMP dependent protein 20.7 2.5E+02 0.0085 23.6 6.5 45 379-430 23-67 (72)
84 4dk0_A Putative MACA; alpha-ha 20.4 5.5E+02 0.019 25.2 10.3 26 265-290 80-105 (369)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.25 E-value=0.0028 Score=58.28 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHH
Q 007043 12 LKMTKDRLDAAEKERDRALDELHE 35 (620)
Q Consensus 12 Lkkakeql~~~e~Ek~r~~dEL~e 35 (620)
+...+..+..+......+-.+|..
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~ 31 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKA 31 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.97 E-value=0.011 Score=54.41 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 007043 120 KKKLQELELEV 130 (620)
Q Consensus 120 K~Kv~~LE~el 130 (620)
...+..|+.++
T Consensus 19 ~~~~~~l~~~l 29 (284)
T 1c1g_A 19 LDRADEAEADK 29 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.63 E-value=8.3e-05 Score=87.34 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 007043 6 RTVEDTLKMTKDRLDAAEKERDRALDELHEM 36 (620)
Q Consensus 6 ~~~qe~Lkkakeql~~~e~Ek~r~~dEL~ea 36 (620)
...+++|...+..|...+..+..+-..+...
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444443333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.49 E-value=0.00026 Score=83.25 Aligned_cols=49 Identities=24% Similarity=0.115 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVE 131 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele 131 (620)
+++.++..++..+..|..++......-..+...+..+..+...|+.+++
T Consensus 882 ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ 930 (1184)
T 1i84_S 882 ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445455555555544444444444444444444444444444444
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.56 E-value=0.21 Score=43.72 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=68.3
Q ss_pred hHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhh
Q 007043 77 IESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMI 156 (620)
Q Consensus 77 i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~ 156 (620)
|..||.+.|.-+- -++++..++..+......+..-+..+.+|++.||.+|+.+. +.|......|+...-
T Consensus 11 m~~lk~e~e~a~d----rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~e-------e~L~ea~~kLee~ek 79 (101)
T 3u1c_A 11 MQMLKLDKENALD----RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL-------EELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4455554443333 23455555555556666677788889999999999999875 477888889999999
Q ss_pred hhhhhhhhHHHHHHHHHhhhh
Q 007043 157 VFEESKFEINSLREKLKKLES 177 (620)
Q Consensus 157 lLeeaesEIasLkekv~~LE~ 177 (620)
.+.+++.+|++|..+|+.||-
T Consensus 80 ~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 80 NAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999984
No 6
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.35 E-value=0.27 Score=42.80 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=66.6
Q ss_pred hHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhh
Q 007043 77 IESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMI 156 (620)
Q Consensus 77 i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~ 156 (620)
|..||.+.|.-+-. ++++..++..+......+..-+..+++|++.||.+++.+. +.|......|+...-
T Consensus 11 m~~lk~e~e~a~d~----ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~-------e~l~~a~~kLe~~ek 79 (101)
T 3u59_A 11 MQMLKLDKENAIDR----AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS-------ESVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 44555544433332 3344445555555555566778889999999999999765 477788889999999
Q ss_pred hhhhhhhhHHHHHHHHHhhhh
Q 007043 157 VFEESKFEINSLREKLKKLES 177 (620)
Q Consensus 157 lLeeaesEIasLkekv~~LE~ 177 (620)
.+.+++.+|++|..+|+.||-
T Consensus 80 ~~~~AE~evasLnRriqllEE 100 (101)
T 3u59_A 80 KATDAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999974
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.90 E-value=4.7 Score=38.70 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHH
Q 007043 121 KKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSE 200 (620)
Q Consensus 121 ~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lkse 200 (620)
.|+-.||.+|++++..=+.=+|+-.-.=|+.-...-.+...+.-+--|++++..|+.. . ..|+..+-.|.+.
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~---k-----~~Leke~~~LQa~ 77 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS---K-----SQTDKDYYQLQAI 77 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHH
Confidence 4677788888888887777777776666666666666666777777888888888753 1 1366777777777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHH
Q 007043 201 LQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEV 280 (620)
Q Consensus 201 le~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~ 280 (620)
|..-+....++-. .|.-|..-+..|..||+..+.. +.-|.++-++..+++..- |-+.
T Consensus 78 L~qEr~~r~q~se-------~~~elq~ri~~L~~El~~~k~~--------------~~k~~~e~r~L~Ekl~~l--EKe~ 134 (168)
T 3o0z_A 78 LEAERRDRGHDSE-------MIGDLQARITSLQEEVKHLKHN--------------LEKVEGERKEAQDMLNHS--EKEK 134 (168)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH--HHHH
Confidence 7766555433321 2444555666677777666554 455678889999999887 5556
Q ss_pred HHhhHHHHHHHHHhhHHHHHH
Q 007043 281 KKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 281 a~aqie~Lk~~Lk~teekye~ 301 (620)
+..+| +|.-.||+...+|+-
T Consensus 135 a~~ei-d~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 135 NNLEI-DLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHH-HHHHHHHHHHHHHHH
T ss_pred HhhhH-HHHHHHHHHHHHHHH
Confidence 66666 467788888888874
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.10 E-value=15 Score=48.45 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=48.6
Q ss_pred hHHhhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhh
Q 007043 77 IESLKKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMI 156 (620)
Q Consensus 77 i~~LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~ 156 (620)
|...+.-+..|-.++...+..|+.=|.+-..| ...|++-+..+..++.+|+++++-=-.+++-+...+.+-+..+.
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~GL~KL~et----~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~ 1976 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDT----EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK 1976 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666666666666666666655544 35666777777777777777666444566666666655555544
Q ss_pred hhhh
Q 007043 157 VFEE 160 (620)
Q Consensus 157 lLee 160 (620)
..+.
T Consensus 1977 ~v~~ 1980 (3245)
T 3vkg_A 1977 DARE 1980 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.01 E-value=10 Score=37.34 Aligned_cols=6 Identities=17% Similarity=-0.180 Sum_probs=2.1
Q ss_pred HHHHHH
Q 007043 226 LEEVRF 231 (620)
Q Consensus 226 ~EEk~~ 231 (620)
..|+..
T Consensus 96 ~kEie~ 101 (256)
T 3na7_A 96 NIEEDI 101 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.74 E-value=11 Score=37.13 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHh
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKN 294 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~ 294 (620)
.++.++-++..|...+...-.+-..-...+..|...+..+.++....+..+.....++..+++.|.+.+..|.+
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666667777777776665555555555566666666666666666666666666666666666666666654
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.77 E-value=18 Score=35.14 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=68.6
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHhhhhhhHhHh
Q 007043 338 FVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANV----AKEASGIARAENARLQDALH 413 (620)
Q Consensus 338 fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~----a~Eale~AkaEn~~LKd~L~ 413 (620)
|+.+-|..|.|+ ..++..+=.-.+.....+.....|...+++++++...|++. ++.-+..-+..+..|+-.
T Consensus 36 FqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~-- 110 (189)
T 2v71_A 36 FQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY-- 110 (189)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 444444444432 22233333333333444455566667788888877777544 333333334444444444
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhhhcccch
Q 007043 414 AKEEALNFICRENEDLKMNEAANIESMKELKKLLSESSSKESKL 457 (620)
Q Consensus 414 dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~~k~~~~ 457 (620)
+-.|-|-|++|=-.+-+...++..+.+.|..+..+..=.
T Consensus 111 -----ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 111 -----VRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999999998765443
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.30 E-value=34 Score=45.25 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=23.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHH
Q 007043 366 AENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALN 420 (620)
Q Consensus 366 aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq 420 (620)
++.+...+.+.-...++.|+........+++-+..+.+|-..|++.+..=+.-|+
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444454455444433333333
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.00 E-value=12 Score=39.71 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhh
Q 007043 256 ALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKE 335 (620)
Q Consensus 256 AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE 335 (620)
.+.++..+.+..++++...+..+...+.+++..+ ..|+++-++.....+.+..++..++....... .+=
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~ 525 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL-------RRYRLPKDGLARSSDNLNKVFTHLKERQAFKL----RET 525 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhcCccccccCCHHHHHHHHHHHHHhhhhhhH----HHH
Confidence 4444445555555555555444444444444433 44444444444455555555555544332222 122
Q ss_pred hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007043 336 TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEAN 392 (620)
Q Consensus 336 ~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean 392 (620)
..|...+..-.++.-.+++|+.++-.-+..........++|++.++..+|+.+...+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 224444444455555666666666666666666666667777777766666665443
No 14
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.82 E-value=19 Score=33.41 Aligned_cols=123 Identities=26% Similarity=0.373 Sum_probs=72.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhHHh
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAADIYTMNETLSKELKVKEKNIESL 80 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae~~~e~~~l~~EL~i~e~~i~~L 80 (620)
||-++..+.++|.++.++|..+ ..=|.+|-+.|||+.-..
T Consensus 1 l~Rri~llEeeLer~eerl~~a-------~~kLeeaek~adE~eR~~--------------------------------- 40 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATA-------LQKLEEAEKAADESERGM--------------------------------- 40 (147)
T ss_dssp ----------CCGGGGTTTTHH-------HHHHHHHHHHHHHHTHHH---------------------------------
T ss_pred CchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------------------------------
Confidence 3455666667777666665443 334566666666665332
Q ss_pred hHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhh
Q 007043 81 KKEWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEE 160 (620)
Q Consensus 81 K~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLee 160 (620)
..+|.+-..-+..|++|-..|.-|+..--.|..-+.+--.|+..+|..|+.+.+ ..+...+...+|+
T Consensus 41 -k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraee----Rae~aE~k~~eLE-------- 107 (147)
T 2b9c_A 41 -KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE----RAELSEGKCAELE-------- 107 (147)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--------
T ss_pred -HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--------
Confidence 123444444455666777777778877778888888888999999999987765 2344444444444
Q ss_pred hhhhHHHHHHHHHhhhhh
Q 007043 161 SKFEINSLREKLKKLESR 178 (620)
Q Consensus 161 aesEIasLkekv~~LE~~ 178 (620)
-++..+-.++.+||..
T Consensus 108 --eeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 108 --EELKTVTNNLKSLEDK 123 (147)
T ss_dssp --HHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHhhHHh
Confidence 3566666777777764
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.54 E-value=26 Score=41.51 Aligned_cols=61 Identities=23% Similarity=0.265 Sum_probs=35.6
Q ss_pred HHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Q 007043 220 LKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKL 290 (620)
Q Consensus 220 s~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~ 290 (620)
.+|..|.+++..|..++..+..+-+.-....+.+-. +..+++..-+.+....+.|+++|..
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~----------~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH----------ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777766666655544444444433332 3336666666666666777777763
No 16
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=79.91 E-value=37 Score=33.78 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q 007043 226 LEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDE 305 (620)
Q Consensus 226 ~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDE 305 (620)
.....++...|..+...-+|+|+..+.+.--+.........++..-...+.+++-++...+.++..+..++..|...+..
T Consensus 133 ~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~ 212 (337)
T 2x3v_A 133 EDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLED 212 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777665543322221222222122345677777777888888888888888877766
Q ss_pred h
Q 007043 306 L 306 (620)
Q Consensus 306 a 306 (620)
+
T Consensus 213 ~ 213 (337)
T 2x3v_A 213 V 213 (337)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.94 E-value=53 Score=31.93 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHH
Q 007043 263 EASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCI 342 (620)
Q Consensus 263 EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ci 342 (620)
.+.+.+..|...+.|+.-+...+-+|-..| +.=|+.+.+=.--|+..+.+|+.|.+..+.-...-=..+...|
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE~EL-------E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELEAEL-------EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666655555 4446666666666777777777776655444444334444557
Q ss_pred HhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007043 343 KRAEEERDGAQQEHEAMLESLKEAENTT 370 (620)
Q Consensus 343 K~sEEE~~s~~~E~~rL~esl~~aE~e~ 370 (620)
-..+.++..++..+..|..-++..|..+
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888877776433
No 18
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=77.84 E-value=8.6 Score=30.99 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=40.3
Q ss_pred hhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007043 334 KETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILK 385 (620)
Q Consensus 334 KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LK 385 (620)
.|.++|+.|-..=+++..+++|+.+|--+| |.++++.++-+.-+|..|+
T Consensus 4 eEKSlVDtVYaLkDqV~eL~qe~k~m~k~l---EeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 4 GSKSLVDTVYALKDEVQELRQDNKKMKKSL---EEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999998876 6667777776666666665
No 19
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=76.50 E-value=2.9 Score=31.12 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=30.4
Q ss_pred HHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 397 ASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 397 ale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
||..|-.||.+|.-.+-.|+++.-.++.||++|+
T Consensus 1 aL~~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 1 TLYEALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3566778999999999999999999999999986
No 20
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=73.42 E-value=4.1 Score=35.19 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 395 KEASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 395 ~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
+-||+.|=.||.+|.+.+..|++++..++.+|+.|+
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999999999999999999999997
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.95 E-value=1.1e+02 Score=36.28 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=13.9
Q ss_pred HHHHhhHHHHhhHHHHHHHHHHH
Q 007043 340 DCIKRAEEERDGAQQEHEAMLES 362 (620)
Q Consensus 340 ~ciK~sEEE~~s~~~E~~rL~es 362 (620)
+-|...+.++..++++++.|-..
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666533
No 22
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=71.63 E-value=69 Score=30.22 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=74.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhH
Q 007043 217 ESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIE 296 (620)
Q Consensus 217 ~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~te 296 (620)
.+-++|..|.+++..+-+-|++--..+++.-.-++.+-.-++..+...++|-.++-.+.--+.--...|++|--.|...+
T Consensus 39 ~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 39 LSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888888888888888888888888888888888888888888888888887777777888888888888888
Q ss_pred HHHHHHHHH
Q 007043 297 DSHKLQLDE 305 (620)
Q Consensus 297 ekye~mLDE 305 (620)
.+|..+.++
T Consensus 119 ek~~~i~~e 127 (155)
T 2efr_A 119 LKYKAISEE 127 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877665
No 23
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.15 E-value=58 Score=29.81 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhh
Q 007043 352 AQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLKM 431 (620)
Q Consensus 352 ~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~ 431 (620)
++.+.++--++|+.+|.++..-+.=.--|++.|+.-..-. +.=+.+-.+|+-.|+..|-+..-++.-++.+|+.|.+
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 4455555556666666666555555556666664211111 2224556677888888888888888888888888876
Q ss_pred hh
Q 007043 432 NE 433 (620)
Q Consensus 432 ~E 433 (620)
+=
T Consensus 107 r~ 108 (121)
T 3mq7_A 107 RI 108 (121)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 24
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=69.61 E-value=76 Score=29.92 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=62.2
Q ss_pred HHHHHHHHhhHHhhH---HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhH
Q 007043 68 KELKVKEKNIESLKK---EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSF 144 (620)
Q Consensus 68 ~EL~i~e~~i~~LK~---~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL 144 (620)
.+|++.-..+.+|-. .+-.+-...+..|..|...|..|-.---.|...|....+-+.-||-+|...+.--+.+.+-|
T Consensus 49 eeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 49 EELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444555544 23333334444444555444444333333456777777888888888888888777777777
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHH
Q 007043 145 AAQTKQLEQTMIVFEESKFEINSLR 169 (620)
Q Consensus 145 ~sqtKqLE~tk~lLeeaesEIasLk 169 (620)
.....+|-...+-+-+-..+|+-|+
T Consensus 129 d~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 129 KQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHhh
Confidence 7777777776666666666666654
No 25
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=69.48 E-value=5.8 Score=34.25 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=33.0
Q ss_pred HHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 395 KEASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 395 ~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
+-||..|=.||..|.+.+..++.++..++++|+.||
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999998
No 26
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.98 E-value=63 Score=28.94 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=47.9
Q ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Q 007043 255 LALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAE 325 (620)
Q Consensus 255 ~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~ 325 (620)
.+|+-.-+|..+.+-.+...+.||+..+.+...|...|..++..|...+..++.-|..|...+.+++.+..
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677778888888999999999999999999999999998888776666555555555555443
No 27
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=68.93 E-value=47 Score=32.68 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHh
Q 007043 228 EVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 228 Ek~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa 306 (620)
...++...+......-+|+|+.-+.++-.+.........++..-...+.+++-++..+..+...+..++..|...+..+
T Consensus 144 ~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~ 222 (312)
T 3abh_A 144 GFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 222 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777777666665554444333333222333457788888888888888888888998888764
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.76 E-value=64 Score=28.75 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=50.3
Q ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Q 007043 257 LKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAE 325 (620)
Q Consensus 257 L~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~ 325 (620)
|+-.-+|..+.+-.+...+.||+..+.+...|...|..++..|...+..++.-|..|...+.+++.+..
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344566777788888899999999999999999999999998888776666665555555555443
No 29
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.85 E-value=73 Score=28.31 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhhhhhhh
Q 007043 6 RTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMSTRKAAD 58 (620)
Q Consensus 6 ~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a~k~ae 58 (620)
..++..+..++.||..+..+++++.-|+.-++-+++.--.|..+-+..+..++
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E 68 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999988776554443
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=65.41 E-value=99 Score=29.67 Aligned_cols=126 Identities=12% Similarity=0.161 Sum_probs=82.7
Q ss_pred HHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 007043 221 KVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK 300 (620)
Q Consensus 221 ~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye 300 (620)
.|-.|--+++.+..-|+.=.+...|.||.--+|..+++..-.-+|+.++++...+..-..-..++-.|...|..
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q------ 80 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA------ 80 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 36667777888888888889999999999999999999999999999999988876655555555555544421
Q ss_pred HHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007043 301 LQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKL 380 (620)
Q Consensus 301 ~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kL 380 (620)
=...|..- -..|+-.+.-+.++..|+.++...+..++.+.+ +|
T Consensus 81 --------------------------Er~~r~q~----se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r-------~L 123 (168)
T 3o0z_A 81 --------------------------ERRDRGHD----SEMIGDLQARITSLQEEVKHLKHNLEKVEGERK-------EA 123 (168)
T ss_dssp --------------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred --------------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 12222221 123444555677777777777777654444333 66
Q ss_pred HHHHHHHHH
Q 007043 381 RDILKQAIN 389 (620)
Q Consensus 381 rd~LKqa~~ 389 (620)
.+.+-...-
T Consensus 124 ~Ekl~~lEK 132 (168)
T 3o0z_A 124 QDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666543333
No 31
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=62.22 E-value=40 Score=33.95 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=50.2
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHh
Q 007043 228 EVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 228 Ek~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa 306 (620)
...+++..+......-+|+|+.-+.++-.+...-.....++..-...+.+++-++..+..++..+..++..|...+..+
T Consensus 144 ~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~ 222 (350)
T 3aco_A 144 GFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 222 (350)
T ss_dssp HHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666777777777776655433222111111111123467888888899999999999999999888765
No 32
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.74 E-value=31 Score=31.19 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH
Q 007043 284 ESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESL 328 (620)
Q Consensus 284 qie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~ 328 (620)
+|+.|+..+......++.+.-|++.-|.-|+.-|-.|++|.....
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555566677888888888888888888888776
No 33
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=61.61 E-value=80 Score=33.60 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHh
Q 007043 228 EVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 228 Ek~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa 306 (620)
...++...|..+...-+|+|+.-+...--........+.++......+.+++-++......+..+..++..|...+..+
T Consensus 137 ~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~ 215 (486)
T 3haj_A 137 GFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 215 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444332211111111111111112234555555555555556666666666555543
No 34
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=60.63 E-value=82 Score=27.82 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHH
Q 007043 143 SFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQL 203 (620)
Q Consensus 143 SL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~ 203 (620)
-.+-++|||-.++..-.+....+..|..+|..+......+.. .-...|++|+.+|..
T Consensus 9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~----eq~~~le~lk~eL~~ 65 (107)
T 2no2_A 9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQ----EQLEVLESLKQELAT 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 356688999999999999999999999998886532111111 112345666666555
No 35
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=60.55 E-value=22 Score=30.36 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=32.8
Q ss_pred HHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 395 KEASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 395 ~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
+-||..|=.||.+|...+..|.+++..+.+||..|+
T Consensus 26 R~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999995
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.36 E-value=1e+02 Score=32.72 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHH
Q 007043 415 KEEALNFICRENEDLKMNEAANIESMKELKKLL 447 (620)
Q Consensus 415 KEneLq~i~qEne~Lr~~EaaA~ekikELs~lL 447 (620)
+...++.+.++++.++-.--...+++.+|+.-+
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 333334444444444433333333344444333
No 37
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.68 E-value=1.2e+02 Score=28.78 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhH
Q 007043 338 FVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEANVAKEASGIARAENARLQDAL 412 (620)
Q Consensus 338 fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L 412 (620)
+|+..+..-..+..++.|...|-.-++.-+.+.+.-..-++.|+|-+-..-.+.|++.+.+.-...||..|=+.+
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333333433444445555555445567777777777777777666655
No 38
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=52.80 E-value=90 Score=25.19 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=41.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHHH-HHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHH
Q 007043 252 DLALALKEVALEASQAKEKLTSTEAELE-VKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEES 327 (620)
Q Consensus 252 dLA~AL~EVS~EAreaKekll~~Q~ElE-~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s 327 (620)
||+.+|.+|=+.--..=. ..+.|+| -|+.++++|..... ++...+--++-||.-|+.++.+|+.|....
T Consensus 6 DL~~il~eiRaQYE~ia~---knr~EaE~~y~~k~eel~~~~~----~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAA---KNLQEAEEWYKSKFADLSEAAN----RNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777776544322211 1233443 35666776665443 333345567788888999999998887643
No 39
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.72 E-value=11 Score=41.69 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=20.9
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDL 253 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdL 253 (620)
-..|-.+...|.+||..+++++- .-++|-|
T Consensus 513 n~~lq~qL~~L~~el~~~r~~~k--~t~~D~l 542 (575)
T 2i1j_A 513 NERLHNQLKALKQDLARSCDETK--ETAMDKI 542 (575)
T ss_dssp CHHHHHHHHHHHHHHHTTBCGGG--CCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhh--cchhHHH
Confidence 34567788899999999997654 3345543
No 40
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=50.30 E-value=1.8e+02 Score=27.91 Aligned_cols=82 Identities=7% Similarity=0.088 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q 007043 226 LEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDE 305 (620)
Q Consensus 226 ~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDE 305 (620)
.++..++..++..+...-+|+|+.-+.++-.+..+-.....+.........+++.++......+..+..++..|...+..
T Consensus 122 ~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~ 201 (305)
T 2efl_A 122 FHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQK 201 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666665554443333333333233344566666666666666677777777777666
Q ss_pred hh
Q 007043 306 LK 307 (620)
Q Consensus 306 a~ 307 (620)
++
T Consensus 202 ~n 203 (305)
T 2efl_A 202 FN 203 (305)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.64 E-value=92 Score=28.56 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 007043 263 EASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHK 300 (620)
Q Consensus 263 EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye 300 (620)
|.-.++..+...+.+++...-++.+||..|..+..+|+
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443
No 42
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=48.31 E-value=27 Score=34.51 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=41.0
Q ss_pred HHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHhhh
Q 007043 395 KEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKKLLSESS 451 (620)
Q Consensus 395 ~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~lL~ea~ 451 (620)
+-||..|=.||..|.+.+..|++++..+++||+.||.- .+.+.-|-.+|...+
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL----ae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV----AEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 55788888899999999999999999999999999821 122444555565555
No 43
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.03 E-value=1.6e+02 Score=26.14 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHH
Q 007043 303 LDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVD 340 (620)
Q Consensus 303 LDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ 340 (620)
+.-++-||.-|+.++.+|+.|......--.+=|..+.+
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455566666666777766665554443333333333
No 44
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.93 E-value=1.8e+02 Score=26.57 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=57.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 007043 366 AENTTRAAKEETLKLRDILKQAINEANVA-KEASGIARAENARLQDALHAKEEALNFICRENEDLKMNEAANIESMKELK 444 (620)
Q Consensus 366 aE~e~~~~~eE~~kLrd~LKqa~~Ean~a-~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs 444 (620)
.......+...+..|+..|+.....-.-+ ..-.....+-...|++..-.-+.+|+.+....-.+...+..+-.+-.++.
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~~e 134 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALE 134 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777766544333222 22222233334466666666666788888877788888988888888999
Q ss_pred HHHHhhhhccc
Q 007043 445 KLLSESSSKES 455 (620)
Q Consensus 445 ~lL~ea~~k~~ 455 (620)
+.|+.|+....
T Consensus 135 k~ls~As~~~~ 145 (155)
T 2oto_A 135 LAIDQASQDYN 145 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999854433
No 45
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=45.75 E-value=2.1e+02 Score=27.47 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Q 007043 225 LLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLD 304 (620)
Q Consensus 225 L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLD 304 (620)
+.+...++..+|..+...-+|+|+.-+.+.--+..+......+.......+.+++-++.........+..++..|...+.
T Consensus 114 ~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~ 193 (301)
T 2efk_A 114 HFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQ 193 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777777766654444433333333222333456666666677777777777777777776
Q ss_pred Hhh
Q 007043 305 ELK 307 (620)
Q Consensus 305 Ea~ 307 (620)
.+|
T Consensus 194 ~~n 196 (301)
T 2efk_A 194 RFN 196 (301)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 46
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.55 E-value=39 Score=28.54 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHH
Q 007043 275 EAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEA 324 (620)
Q Consensus 275 Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea 324 (620)
+.|++..+.+...|...|..++..|...+...+.-|..|..-+.+++.+.
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARM 51 (86)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888889999999999998888776655555555555554443
No 47
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=45.38 E-value=1.1e+02 Score=25.65 Aligned_cols=48 Identities=13% Similarity=0.303 Sum_probs=35.4
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHH
Q 007043 277 ELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEA 324 (620)
Q Consensus 277 ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea 324 (620)
|++..+.+...|...|..++..|...+...+.-|..|...+.+++.+.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888989988888888776655555555555555544
No 48
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.72 E-value=1.7e+02 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=12.7
Q ss_pred HHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Q 007043 302 QLDELKKEADLYRNTADRLTLEAEESLLA 330 (620)
Q Consensus 302 mLDEa~~E~~~lk~tverl~~Ea~~s~~e 330 (620)
.+--++-||.-|+.++.+|++|......-
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445666677777777777766554433
No 49
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.46 E-value=1.4e+02 Score=25.31 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHhh
Q 007043 13 KMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMST 53 (620)
Q Consensus 13 kkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~a 53 (620)
.-.+.||..+-.+++++.-|+.-|+-.++.-..|..+-+.-
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~ 43 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ 43 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999988888655443
No 50
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=43.51 E-value=79 Score=26.93 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHHHH
Q 007043 117 SESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEINSL 168 (620)
Q Consensus 117 ~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIasL 168 (620)
.+|..+|+.|+.+|+.++..--..-.-|...+.+|+.--.-|+|-.-.++.|
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4588888888888888887766666777888888888555555544444443
No 51
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=42.65 E-value=66 Score=27.68 Aligned_cols=59 Identities=14% Similarity=0.284 Sum_probs=41.3
Q ss_pred hHHhhH--HHHHHHHh-hhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 007043 77 IESLKK--EWEIKLVE-KDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKE 135 (620)
Q Consensus 77 i~~LK~--~~E~kl~E-~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~e 135 (620)
|..|+. .+|.+++. .|++|.-+..--..=|+.-+.|.+.+.++|.||+.|-+++..+.+
T Consensus 10 l~~L~kqL~IElkVK~GAENmi~~y~~g~~~drKlLaeAQqmL~DSk~KIe~lRmqI~k~~q 71 (81)
T 1urf_A 10 VAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQ 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554 34445443 355555554444445788899999999999999999999987665
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.63 E-value=1.4e+02 Score=24.59 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=45.8
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhH
Q 007043 267 AKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNE 333 (620)
Q Consensus 267 aKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~ 333 (620)
.|.|+...+.+.++|...++.+...|+.++..+... -.|+..|.+.+-.|+.+++.+......
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~----E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQL----EDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888887766443 335777777777777777766555443
No 53
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.73 E-value=1.9e+02 Score=25.76 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHh
Q 007043 83 EWEIKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKR 133 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a 133 (620)
.+|.+.+.+..-...|...|..-+..-+++...+.....+-..||..|...
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666666666544
No 54
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=40.87 E-value=85 Score=26.81 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 007043 338 FVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAA 373 (620)
Q Consensus 338 fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~ 373 (620)
|-.+|-.-.++|+.+++||..|.+++..+..++.++
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888887776666555543
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.85 E-value=2.2e+02 Score=26.91 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=28.2
Q ss_pred hhhHhHhhhHHHHHHHHHhhhhhhhhhhhhHHhHHHHHH----HHHhhhhcccch
Q 007043 407 RLQDALHAKEEALNFICRENEDLKMNEAANIESMKELKK----LLSESSSKESKL 457 (620)
Q Consensus 407 ~LKd~L~dKEneLq~i~qEne~Lr~~EaaA~ekikELs~----lL~ea~~k~~~~ 457 (620)
+|.+.+..|...++.+..|+..|++.=..+.+++..|.. |+.-.+.++..+
T Consensus 86 dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qE 140 (152)
T 3a7p_A 86 RLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKE 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666555555555544433 444445444443
No 56
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=40.59 E-value=34 Score=30.66 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhh
Q 007043 141 FDSFAAQTKQLEQTMIVFEESKFEINSLREKLKKLESR 178 (620)
Q Consensus 141 ~eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~LE~~ 178 (620)
+-|+.+++++|.+++.-+.+-..+|..|+..|..||.+
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999864
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.17 E-value=1e+02 Score=25.92 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhHH
Q 007043 117 SESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEIN 166 (620)
Q Consensus 117 ~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEIa 166 (620)
.+|..+|+.|+.+|+.++..--..-.-|...+.+|+.--.-|+|-.-.++
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45788888888888888776666666777777777775444444333333
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.31 E-value=2.5e+02 Score=31.46 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=45.2
Q ss_pred HHHHhhhhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhhhhhhhhhhhH
Q 007043 86 IKLVEKDASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTMIVFEESKFEI 165 (620)
Q Consensus 86 ~kl~E~e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk~lLeeaesEI 165 (620)
..=..+...|++||..|..-.+....+.+.+ +...+.|..++..+++.+ ......+.+ -+..|
T Consensus 57 kqErDltkrINELKnqLEdlsKnsKdseqy~---k~~~E~Lr~rq~q~~dNd----NtynE~S~E----------LRRrI 119 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLT---TNIMEILRGDFSSANNRD----NTYNRVSED----------LRSRI 119 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHTTSSHHHHHHHHH----HHHHHTTHH----------HHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHhhchhHHHHH---HHHHHHHHHHHHhhhccc----hhHHHHHHH----------HHHHH
Confidence 3334445667777777776655554444432 233333333333333322 112222222 33344
Q ss_pred HHHHHHHHhhhhhhhhhcccCcccchhhHHHHHHHHHHHHH
Q 007043 166 NSLREKLKKLESRDLNASQSGLAGTNETVEFLNSELQLAKD 206 (620)
Q Consensus 166 asLkekv~~LE~~~~~~~~~e~~~lq~~ve~Lksele~~~e 206 (620)
..|+++|..- ..+ ...||.-|+.++++++.++.
T Consensus 120 qyLKekVdnQ------lsn--IrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 120 EVLKRKVIEK------VQH--IQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4455444221 111 13467777888777777644
No 59
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=36.15 E-value=14 Score=25.24 Aligned_cols=12 Identities=58% Similarity=0.947 Sum_probs=9.4
Q ss_pred HHHHhhHHHHhh
Q 007043 598 LIRRFGDILLMR 609 (620)
Q Consensus 598 llrkFGdll~rr 609 (620)
-||||||.|--|
T Consensus 10 qlrr~gdkln~r 21 (25)
T 3mqp_B 10 QLRRFGDKLNFR 21 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 489999998544
No 60
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.52 E-value=1.6e+02 Score=24.93 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 007043 2 QQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEAN 44 (620)
Q Consensus 2 q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan 44 (620)
|+++......+.....++..+...+..+-.++.+...|.+|-.
T Consensus 5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666777777788888888887778888877777654
No 61
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=34.47 E-value=5.3e+02 Score=28.78 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=41.3
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH-----------HHHhHhhhhHH
Q 007043 271 LTSTEAELEVKKAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESL-----------LAWNEKETRFV 339 (620)
Q Consensus 271 ll~~Q~ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~-----------~eW~~KE~~fV 339 (620)
|..+++||+.|..-+.+++..+. +-..+++..|.+.|..-++|.+..++.++.- --|++ .++
T Consensus 323 ~e~a~ael~~a~k~~a~~~er~~----~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~--~~~- 395 (551)
T 2b5u_A 323 YERARAELNQANEDVARNQERQA----KAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQM--AGL- 395 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHH--HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhh--ccc-
Confidence 44444455544444444444333 2345555666666666667777766666554 67888 332
Q ss_pred HHHHhhHHHHhhHH
Q 007043 340 DCIKRAEEERDGAQ 353 (620)
Q Consensus 340 ~ciK~sEEE~~s~~ 353 (620)
.|++..+++..++
T Consensus 396 -~~~~~~~dv~~~~ 408 (551)
T 2b5u_A 396 -KAQRAQTDVNNKQ 408 (551)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hhhhhhhhhhhHH
Confidence 6777666644443
No 62
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=34.06 E-value=77 Score=30.79 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=13.6
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHh
Q 007043 277 ELEVKKAESEELKLKLKNIEDSHKLQLDEL 306 (620)
Q Consensus 277 ElE~a~aqie~Lk~~Lk~teekye~mLDEa 306 (620)
+++-++..++.....+..++..|...+..+
T Consensus 171 ~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~ 200 (290)
T 3i2w_A 171 QVKKMHDRVQKTKDQVQKCREKYEQAIAEI 200 (290)
T ss_dssp -----CTTSSTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455666666666666543
No 63
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=33.98 E-value=1.4e+02 Score=24.39 Aligned_cols=49 Identities=31% Similarity=0.429 Sum_probs=38.7
Q ss_pred hhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007043 335 ETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQ 386 (620)
Q Consensus 335 E~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKq 386 (620)
|..+|+.|-.+=+++..+++++.++--.+ +.++++.+.-+.-+|..+++
T Consensus 2 EkSLVDtVYalkDev~eLk~e~k~~k~~l---e~eqraRk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 2 EKSLVDTVYALKDEVQELRQDNKKMKKSL---EEEQRARKDLEKLVRKVLKN 50 (61)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999887765 56667666666666666655
No 64
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=32.95 E-value=2.7e+02 Score=25.03 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=28.9
Q ss_pred HhhHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHHHhhHHHHhhHHH
Q 007043 282 KAESEELKLKLKNIEDSHKLQLDELKKEADLYRNTADRLTLEAEESLLAWNEKETRFVDCIKRAEEERDGAQQ 354 (620)
Q Consensus 282 ~aqie~Lk~~Lk~teekye~mLDEa~~E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ciK~sEEE~~s~~~ 354 (620)
+.|.+-|...+..+++-+..+.++- ..|...|..+..+...+=..|...+..+|-.+..+++
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r-----------~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDK-----------QELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444444444432 3333334444444444444455555555554444443
No 65
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.93 E-value=2.6e+02 Score=24.70 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHH
Q 007043 197 LNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEA 276 (620)
Q Consensus 197 Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ 276 (620)
|.+.++.+++...++...-......+..|..+...-+.--..|-....+.-.=+|||+++|=+ +|-.-+..+.-
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~ar~ 76 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADARK 76 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHhhH
Q 007043 277 ELEVKKAESEELKLKLKNIE 296 (620)
Q Consensus 277 ElE~a~aqie~Lk~~Lk~te 296 (620)
+...+.-..+.|+..|+.++
T Consensus 77 e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.06 E-value=2.8e+02 Score=24.88 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHH
Q 007043 229 VRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELE 279 (620)
Q Consensus 229 k~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE 279 (620)
...-.++|+.+-|.-|+..++. ++.|..+-+-.++|=|+-..-+.||+
T Consensus 54 l~~~iReLEq~NDDLER~~R~t---~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 54 LHKYVRELEQANDDLERAKRAT---IVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567777888777777774 56777777788888888777777776
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.48 E-value=85 Score=32.71 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHhhHHHHh
Q 007043 1 MQQYMRTVEDTLKMTKDRLDAAEKERDRALDELHEMKRMAQEANMRLSETMS 52 (620)
Q Consensus 1 ~q~~l~~~qe~Lkkakeql~~~e~Ek~r~~dEL~eakk~AdEan~kL~eal~ 52 (620)
||.-...+..+.+...+++....+++.|+-.++.+....-.+|+++|++|.+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
No 68
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=30.87 E-value=23 Score=24.69 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=10.2
Q ss_pred HHHHHhhHHHHhh
Q 007043 597 ALIRRFGDILLMR 609 (620)
Q Consensus 597 allrkFGdll~rr 609 (620)
|-||||||.+--|
T Consensus 9 aqlr~~gdkln~r 21 (27)
T 2jm6_A 9 AQLRRIGDKVNLR 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH
Confidence 4699999998544
No 69
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.78 E-value=3.2e+02 Score=25.38 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHhHhH---H----HHHhhhhhHHHHHHHHHH
Q 007043 223 RSLLEEVRFLKNELKLVT---G----AEENNQKALDDLALALKE 259 (620)
Q Consensus 223 ~~L~EEk~~L~~EL~~a~---~----eEEKsKKAMEdLA~AL~E 259 (620)
..+..++..|..+|...+ . ...+.-.=+|||+++|=+
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666554322 1 222334457899999854
No 70
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.99 E-value=2.9e+02 Score=24.40 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=26.6
Q ss_pred HhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007043 343 KRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDIL 384 (620)
Q Consensus 343 K~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~L 384 (620)
...|.++..++..++...=.--+.|.....+++|..=|+..-
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666555566666666666666555443
No 71
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.80 E-value=2.3e+02 Score=23.27 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Q 007043 259 EVALEASQAKEKLTSTEAELEVKKAESEELKLKL 292 (620)
Q Consensus 259 EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~L 292 (620)
..-.+....+-++...+.+++.+...+......|
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555554444444433
No 72
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.85 E-value=58 Score=27.49 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=27.3
Q ss_pred hhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007043 335 ETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTR 371 (620)
Q Consensus 335 E~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~ 371 (620)
|+|+++.||..|-.|+++..|++-+--.+-.+|-..+
T Consensus 3 ErGl~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vq 39 (74)
T 1avy_A 3 ESGLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQ 39 (74)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcccccchhhhheeeccccchhhhhhhhhH
Confidence 7899999999999999999999877777666665444
No 73
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.57 E-value=2.1e+02 Score=21.92 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhh
Q 007043 142 DSFAAQTKQLEQTMIVFEESKFEINSLREKLKKL 175 (620)
Q Consensus 142 eSL~sqtKqLE~tk~lLeeaesEIasLkekv~~L 175 (620)
..+.+.+..|.+...-|.....+|..++.+|.++
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555566666666666677777777766543
No 74
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.51 E-value=6e+02 Score=27.31 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhhhhhHHHHhhhHHHhhhhHHHH----hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHhhh
Q 007043 80 LKKEWEIKLVEKDASLDELKGTLSNAKSSEAHA----MSLYSESKKKLQELELEVEKRKESEKKMFDSFAAQTKQLEQTM 155 (620)
Q Consensus 80 LK~~~E~kl~E~e~~ie~L~~el~~Ak~aes~a----~~l~~EwK~Kv~~LE~ele~a~esE~~~~eSL~sqtKqLE~tk 155 (620)
|++.+...=......|+.|+..|..-+..=..+ ..+.+-||.++ ..++..+ ..+..++.+|++
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~-------~q~~dnd----n~~~e~s~eLe~-- 120 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDF-------AKANNND----NTFKQINEDLRS-- 120 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------Hhhccch----HHHHHHHHHHHH--
Confidence 444333333666788999999998887766555 44555555543 3334433 444555555554
Q ss_pred hhhhhhhhhHHHHHHHH
Q 007043 156 IVFEESKFEINSLREKL 172 (620)
Q Consensus 156 ~lLeeaesEIasLkekv 172 (620)
.|.-|+++|
T Consensus 121 --------~i~~lk~~V 129 (390)
T 1deq_A 121 --------RIEILRRKV 129 (390)
T ss_pred --------HHHHHHHHH
Confidence 677777776
No 75
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.91 E-value=3.2e+02 Score=23.56 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=20.2
Q ss_pred hHHHHHHhhHHHHhhHHHHHHHHHHHHHHH
Q 007043 337 RFVDCIKRAEEERDGAQQEHEAMLESLKEA 366 (620)
Q Consensus 337 ~fV~ciK~sEEE~~s~~~E~~rL~esl~~a 366 (620)
.|-.+|-..++|++.++.++..|-++...+
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777665433
No 76
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=25.52 E-value=2.8e+02 Score=23.85 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHh
Q 007043 379 KLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRE 425 (620)
Q Consensus 379 kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qE 425 (620)
.||-.+....+|=+.----|.-.++|.+.|+..|..|+.++..+.-+
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555555555444445555678888888888888887777544
No 77
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.63 E-value=2.1e+02 Score=25.57 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=34.0
Q ss_pred HhhhhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007043 333 EKETRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRD 382 (620)
Q Consensus 333 ~KE~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd 382 (620)
..=+.+-.|+-+.|+|...++.........+++-+.++..++.||+.|+.
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33345556667777777777777666666677777777777777777764
No 78
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=24.27 E-value=22 Score=28.21 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.0
Q ss_pred hhhhhhHHHHHhhHHH
Q 007043 591 NTRKKKALIRRFGDIL 606 (620)
Q Consensus 591 ~~kKkkallrkFGdll 606 (620)
..++++.||++||++=
T Consensus 13 G~kr~~~LL~~Fgs~~ 28 (63)
T 2a1j_A 13 NAKNCRSLMHHVKNIA 28 (63)
T ss_dssp CHHHHHHHHHHCSSHH
T ss_pred CHHHHHHHHHHcCCHH
Confidence 3577888999999974
No 79
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.88 E-value=2.1e+02 Score=22.41 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=18.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007043 345 AEEERDGAQQEHEAMLESLKEAENTTRAAKEET 377 (620)
Q Consensus 345 sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~ 377 (620)
....+..+..-|.+|++.|+.|..+...++++.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666777665555444444333
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.84 E-value=2.9e+02 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=22.1
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007043 338 FVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRA 372 (620)
Q Consensus 338 fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~ 372 (620)
|-.+|-.-++|++.++.||..|-++-..+..++.+
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~ 77 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777775555544443
No 81
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.24 E-value=4.5e+02 Score=24.35 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=14.2
Q ss_pred HHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 402 RAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 402 kaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
.--|.+|+..+.||+.-|.++..+..+|+
T Consensus 102 e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 102 EILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466888899999988888877766665
No 82
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=21.71 E-value=2.3e+02 Score=25.07 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhhHHHHhh---hHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHh
Q 007043 83 EWEIKLVEKDASLDELKG---TLSNAKSSEAHAMSLYSESKKKLQELELEVEKR 133 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~~---el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a 133 (620)
.||+.+.+++.+|.+|.. .|+.+-..=-++..|+.....++..-|.+++.-
T Consensus 31 sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 31 DFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999954 466655555555666666666666666555544
No 83
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.69 E-value=2.5e+02 Score=23.61 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHhHhhhHHHHHHHHHhhhhhh
Q 007043 379 KLRDILKQAINEANVAKEASGIARAENARLQDALHAKEEALNFICRENEDLK 430 (620)
Q Consensus 379 kLrd~LKqa~~Ean~a~Eale~AkaEn~~LKd~L~dKEneLq~i~qEne~Lr 430 (620)
.|++.|+....|...-.+-. ..|...|.+||.+++.+.-+.+.+|
T Consensus 23 eLq~~L~~K~eELr~kd~~I-------~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALI-------DELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555544322222 2677788889999999988888876
No 84
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.36 E-value=5.5e+02 Score=25.24 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=13.0
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHH
Q 007043 265 SQAKEKLTSTEAELEVKKAESEELKL 290 (620)
Q Consensus 265 reaKekll~~Q~ElE~a~aqie~Lk~ 290 (620)
.+++..|..+++.++.|+.+.++++.
T Consensus 80 ~~~~a~l~~a~~~~~~a~~~~~r~~~ 105 (369)
T 4dk0_A 80 ASYQAQLVARKTAYDVALSNYQRLSK 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555443
Done!