Query 007043
Match_columns 620
No_of_seqs 53 out of 55
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 15:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007043.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007043hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efka1 a.238.1.4 (A:10-288) C 50.1 76 0.0056 27.4 26.2 87 222-308 104-190 (279)
2 d1urfa_ a.2.6.1 (A:) Protein k 31.9 59 0.0043 25.6 6.8 45 92-136 28-72 (81)
3 d1s35a1 a.7.1.1 (A:1063-1168) 28.3 1.1E+02 0.0079 22.8 9.1 66 277-342 40-106 (106)
4 d1vp7a_ a.7.13.1 (A:) Exonucle 16.9 1.4E+02 0.01 22.4 6.1 49 83-131 7-58 (68)
5 d2efla1 a.238.1.4 (A:1-288) Fo 16.6 2.9E+02 0.021 23.4 25.8 85 223-307 114-198 (288)
6 d1qvra2 c.37.1.20 (A:149-535) 13.7 5E+02 0.036 24.6 12.7 44 92-135 231-274 (387)
7 d2a1ja1 a.60.2.5 (A:837-898) D 11.8 31 0.0022 25.3 0.7 15 592-606 13-27 (62)
8 d1r44a_ d.65.1.4 (A:) D-Ala-D- 8.8 1.2E+02 0.0091 27.0 4.0 32 570-601 136-168 (202)
9 d2gtsa1 a.25.5.1 (A:4-80) Hypo 8.8 3.7E+02 0.027 20.4 6.1 54 336-392 9-62 (77)
10 d1qvra2 c.37.1.20 (A:149-535) 8.3 4.4E+02 0.032 25.0 8.1 45 190-238 287-331 (387)
No 1
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.11 E-value=76 Score=27.37 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=54.9
Q ss_pred HhhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 007043 222 VRSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKL 301 (620)
Q Consensus 222 i~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~ 301 (620)
...+.++..++..+|......-+|+|+-.+.....+.........+.......+..+..+..........+..+...|..
T Consensus 104 ~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~y~~ 183 (279)
T d2efka1 104 RKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAA 183 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777666555544444333333333334445566677777777777777777777887
Q ss_pred HHHHhhh
Q 007043 302 QLDELKK 308 (620)
Q Consensus 302 mLDEa~~ 308 (620)
.+..+|.
T Consensus 184 ~l~~~n~ 190 (279)
T d2efka1 184 QLQRFNR 190 (279)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 2
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.94 E-value=59 Score=25.61 Aligned_cols=45 Identities=9% Similarity=0.224 Sum_probs=34.6
Q ss_pred hhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 007043 92 DASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKES 136 (620)
Q Consensus 92 e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~es 136 (620)
|+++.-|...-..=+++-++|...+.++..|++.|-+.|.+.+++
T Consensus 28 Enm~k~~~~~~~~DrK~l~eaq~~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 28 ENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555554433346777899999999999999999999988875
No 3
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.35 E-value=1.1e+02 Score=22.75 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=48.6
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHhhh-HHHHHHhhHHHHHHHHHHHHHHHhHhhhhHHHHH
Q 007043 277 ELEVKKAESEELKLKLKNIEDSHKLQLDELKK-EADLYRNTADRLTLEAEESLLAWNEKETRFVDCI 342 (620)
Q Consensus 277 ElE~a~aqie~Lk~~Lk~teekye~mLDEa~~-E~~~lk~tverl~~Ea~~s~~eW~~KE~~fV~ci 342 (620)
.+.....+|..-+..+.........+++...+ +...++..+..|...|......|..|-.-|-.|+
T Consensus 40 ~h~~l~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~I~~~l~~L~~~w~~L~~~~~~R~~~Le~aL 106 (106)
T d1s35a1 40 QHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCL 106 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455556666666666666666777655443 6788999999999999999999999887776653
No 4
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=16.92 E-value=1.4e+02 Score=22.42 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhhHHHHh---hhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 007043 83 EWEIKLVEKDASLDELK---GTLSNAKSSEAHAMSLYSESKKKLQELELEVE 131 (620)
Q Consensus 83 ~~E~kl~E~e~~ie~L~---~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele 131 (620)
.||+.+.+++..|.+|. ..|+.+-..=-....|+...+.+++.-|.++.
T Consensus 7 sfEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~ 58 (68)
T d1vp7a_ 7 DFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVK 58 (68)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888998888884 34555555555556666666666666665554
No 5
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.64 E-value=2.9e+02 Score=23.36 Aligned_cols=85 Identities=8% Similarity=0.093 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHhHhHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 007043 223 RSLLEEVRFLKNELKLVTGAEENNQKALDDLALALKEVALEASQAKEKLTSTEAELEVKKAESEELKLKLKNIEDSHKLQ 302 (620)
Q Consensus 223 ~~L~EEk~~L~~EL~~a~~eEEKsKKAMEdLA~AL~EVS~EAreaKekll~~Q~ElE~a~aqie~Lk~~Lk~teekye~m 302 (620)
..+..+..++..++......-+|+|+......-.+...-.....+.........+++..+.........+..+...|...
T Consensus 114 K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~ 193 (288)
T d2efla1 114 KSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSI 193 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666554443333332222223333333344566666666666677777777777777
Q ss_pred HHHhh
Q 007043 303 LDELK 307 (620)
Q Consensus 303 LDEa~ 307 (620)
+..+|
T Consensus 194 v~~~n 198 (288)
T d2efla1 194 LQKFN 198 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=13.72 E-value=5e+02 Score=24.59 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=27.3
Q ss_pred hhhHHHHhhhHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 007043 92 DASLDELKGTLSNAKSSEAHAMSLYSESKKKLQELELEVEKRKE 135 (620)
Q Consensus 92 e~~ie~L~~el~~Ak~aes~a~~l~~EwK~Kv~~LE~ele~a~e 135 (620)
+..|+-|..-.+.+++.-+-.-.-++.++.++..|+.+.+....
T Consensus 231 dKAidlld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~k 274 (387)
T d1qvra2 231 DKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKK 274 (387)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555545555555554555677888888888887775544
No 7
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.77 E-value=31 Score=25.26 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=12.2
Q ss_pred hhhhhHHHHHhhHHH
Q 007043 592 TRKKKALIRRFGDIL 606 (620)
Q Consensus 592 ~kKkkallrkFGdll 606 (620)
.+..+.|+++||++=
T Consensus 13 ~~~~~~Ll~~f~Si~ 27 (62)
T d2a1ja1 13 AKNCRSLMHHVKNIA 27 (62)
T ss_dssp HHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhccHH
Confidence 466778999999874
No 8
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]}
Probab=8.81 E-value=1.2e+02 Score=27.04 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCC-CCCCCCcchhhhhhhHHHHH
Q 007043 570 IIPDDLDNLEGT-HLDDPDGDRNTRKKKALIRR 601 (620)
Q Consensus 570 ~~~~~fD~~dg~-h~~d~e~~~~~kKkkallrk 601 (620)
+-|-.||.++.. |.+....+...+..|.||+.
T Consensus 136 dMGt~fD~f~~~s~~~~~~~s~~~~~NR~lL~~ 168 (202)
T d1r44a_ 136 PMGSRFDFMDERSHHAANGISCNEAQNRRRLRS 168 (202)
T ss_dssp CCSSCTTCCSGGGSTTCSSSCHHHHHHHHHHHH
T ss_pred cCCCccCCCChhhcccccCCCHHHHHHHHHHHH
Confidence 455689998854 77777777778888888875
No 9
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=8.77 E-value=3.7e+02 Score=20.41 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=41.1
Q ss_pred hhHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007043 336 TRFVDCIKRAEEERDGAQQEHEAMLESLKEAENTTRAAKEETLKLRDILKQAINEAN 392 (620)
Q Consensus 336 ~~fV~ciK~sEEE~~s~~~E~~rL~esl~~aE~e~~~~~eE~~kLrd~LKqa~~Ean 392 (620)
++||..+.++-| .+..|++-|-.-....+.=+.+.++.-..+.|.||..-+|-.
T Consensus 9 r~fv~hlerfke---llndevngls~hf~nl~swqd~~rd~fsevldnlk~tfnefd 62 (77)
T d2gtsa1 9 REFVGHLERFKE---LLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFD 62 (77)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHhhHHHhhcchHhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 578888877755 456678888777665565566778888999999998888754
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=8.31 E-value=4.4e+02 Score=25.03 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHHHHHHHHHHHhH
Q 007043 190 TNETVEFLNSELQLAKDKLAISEKNEKESLLKVRSLLEEVRFLKNELKL 238 (620)
Q Consensus 190 lq~~ve~Lksele~~~e~~~~Al~nEk~ass~i~~L~EEk~~L~~EL~~ 238 (620)
+...+..|+.++..+... ...++.....+..|.+++..++.+++.
T Consensus 287 le~el~~lee~~~~L~~~----w~~ek~~l~~i~~Lk~~Le~lr~~le~ 331 (387)
T d1qvra2 287 IEAEIAKLTEEIAKLRAE----WEREREILRKLREAQHRLDEVRREIEL 331 (387)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444443222 233443333444444444444444433
Done!