Query 007044
Match_columns 620
No_of_seqs 512 out of 4138
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 18:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 3.3E-78 7.2E-83 666.8 53.7 494 108-620 5-545 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 1.2E-79 2.7E-84 638.3 33.7 360 110-475 92-458 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 1.1E-78 2.3E-83 591.8 32.7 368 105-488 57-430 (476)
4 KOG0338 ATP-dependent RNA heli 100.0 4.4E-76 9.6E-81 589.6 29.7 368 108-488 180-559 (691)
5 COG0513 SrmB Superfamily II DN 100.0 2.1E-73 4.5E-78 617.9 40.2 372 109-492 29-409 (513)
6 KOG0342 ATP-dependent RNA heli 100.0 1.4E-72 2.9E-77 565.0 34.3 373 108-491 81-460 (543)
7 KOG0328 Predicted ATP-dependen 100.0 7.5E-72 1.6E-76 521.7 27.2 369 103-487 21-395 (400)
8 KOG0340 ATP-dependent RNA heli 100.0 1.4E-71 3E-76 535.9 28.7 371 107-490 5-386 (442)
9 KOG0345 ATP-dependent RNA heli 100.0 1.4E-69 3.1E-74 539.3 35.4 408 109-526 4-425 (567)
10 KOG0347 RNA helicase [RNA proc 100.0 4.1E-71 9E-76 558.5 23.7 388 105-496 177-601 (731)
11 KOG0343 RNA Helicase [RNA proc 100.0 1.8E-69 4E-74 546.5 31.8 371 105-487 65-444 (758)
12 KOG0333 U5 snRNP-like RNA heli 100.0 2.8E-69 6.1E-74 542.9 31.5 362 108-474 244-633 (673)
13 PRK11776 ATP-dependent RNA hel 100.0 7.9E-68 1.7E-72 574.0 44.3 433 108-618 3-442 (460)
14 KOG0326 ATP-dependent RNA heli 100.0 1.4E-68 3E-73 507.6 21.8 364 105-485 81-449 (459)
15 PRK04837 ATP-dependent RNA hel 100.0 6.5E-66 1.4E-70 553.1 40.4 373 108-487 7-384 (423)
16 KOG0336 ATP-dependent RNA heli 100.0 1.2E-66 2.7E-71 508.7 28.1 349 109-466 219-572 (629)
17 PTZ00110 helicase; Provisional 100.0 3E-65 6.4E-70 559.4 40.2 363 106-476 127-495 (545)
18 KOG0335 ATP-dependent RNA heli 100.0 6.2E-66 1.3E-70 526.7 29.8 356 109-466 74-444 (482)
19 PRK10590 ATP-dependent RNA hel 100.0 5.9E-64 1.3E-68 541.5 40.6 369 110-488 2-375 (456)
20 KOG0348 ATP-dependent RNA heli 100.0 1.5E-64 3.3E-69 509.4 32.7 366 106-476 133-565 (708)
21 PRK04537 ATP-dependent RNA hel 100.0 1.4E-63 3E-68 547.9 40.3 369 109-484 9-383 (572)
22 PLN00206 DEAD-box ATP-dependen 100.0 7.2E-63 1.6E-67 539.2 40.0 363 106-477 118-487 (518)
23 KOG0346 RNA helicase [RNA proc 100.0 8E-64 1.7E-68 493.9 27.9 360 109-476 19-421 (569)
24 PRK11192 ATP-dependent RNA hel 100.0 5.1E-62 1.1E-66 525.3 40.9 362 110-483 2-370 (434)
25 KOG0341 DEAD-box protein abstr 100.0 1.1E-64 2.3E-69 491.9 14.3 351 106-466 167-528 (610)
26 KOG0339 ATP-dependent RNA heli 100.0 2.8E-62 6.2E-67 489.6 29.1 351 106-466 220-575 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 1.4E-60 3E-65 518.7 43.4 376 105-488 83-464 (475)
28 KOG0332 ATP-dependent RNA heli 100.0 4.4E-62 9.6E-67 472.7 25.7 369 107-494 88-473 (477)
29 KOG0350 DEAD-box ATP-dependent 100.0 1.6E-60 3.5E-65 477.4 33.2 360 109-479 127-554 (620)
30 KOG0327 Translation initiation 100.0 1.7E-60 3.6E-65 466.5 23.8 362 108-487 25-392 (397)
31 KOG0334 RNA helicase [RNA proc 100.0 1.6E-59 3.4E-64 510.6 30.2 369 107-487 363-740 (997)
32 PTZ00424 helicase 45; Provisio 100.0 6.4E-58 1.4E-62 489.7 39.8 364 108-487 27-396 (401)
33 KOG0337 ATP-dependent RNA heli 100.0 1E-58 2.2E-63 455.7 20.4 364 108-485 20-388 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 1.8E-54 4E-59 487.2 40.1 365 115-501 20-425 (742)
35 KOG4284 DEAD box protein [Tran 100.0 4.9E-56 1.1E-60 455.5 24.0 352 105-473 21-388 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 1.8E-54 4E-59 444.6 25.1 353 114-476 141-506 (593)
37 PLN03137 ATP-dependent DNA hel 100.0 6.8E-50 1.5E-54 446.2 35.1 338 112-474 440-796 (1195)
38 KOG0329 ATP-dependent RNA heli 100.0 4.2E-51 9.1E-56 377.2 14.5 336 102-483 35-374 (387)
39 TIGR00614 recQ_fam ATP-depende 100.0 4.2E-49 9.1E-54 427.0 32.4 325 126-475 6-343 (470)
40 PRK02362 ski2-like helicase; P 100.0 3.7E-48 8.1E-53 440.8 31.6 334 110-466 2-397 (737)
41 PRK13767 ATP-dependent helicas 100.0 4.8E-47 1E-51 435.5 37.5 371 116-494 18-430 (876)
42 PRK11057 ATP-dependent DNA hel 100.0 2.6E-47 5.6E-52 423.5 33.7 334 114-474 7-352 (607)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.2E-47 4.7E-52 421.1 31.4 314 127-465 12-390 (844)
44 TIGR01389 recQ ATP-dependent D 100.0 5.9E-46 1.3E-50 414.0 32.0 325 123-474 4-340 (591)
45 PRK00254 ski2-like helicase; P 100.0 1.6E-45 3.6E-50 418.2 34.6 333 110-466 2-388 (720)
46 TIGR00580 mfd transcription-re 100.0 4E-44 8.7E-49 406.8 34.9 319 114-466 434-770 (926)
47 PRK01172 ski2-like helicase; P 100.0 1.1E-43 2.4E-48 401.6 31.1 330 110-466 2-378 (674)
48 PRK10689 transcription-repair 100.0 4.9E-43 1.1E-47 406.0 33.1 314 118-465 588-918 (1147)
49 PRK09401 reverse gyrase; Revie 100.0 1.7E-42 3.6E-47 402.5 36.7 286 122-438 71-410 (1176)
50 PHA02653 RNA helicase NPH-II; 100.0 1.3E-42 2.7E-47 382.0 33.3 314 134-474 167-523 (675)
51 TIGR00643 recG ATP-dependent D 100.0 3.7E-42 8E-47 383.9 35.2 317 118-464 223-564 (630)
52 PRK09751 putative ATP-dependen 100.0 1.5E-42 3.2E-47 403.4 32.7 339 151-497 1-420 (1490)
53 COG1201 Lhr Lhr-like helicases 100.0 1.2E-42 2.5E-47 381.6 29.9 359 116-488 8-387 (814)
54 PRK10917 ATP-dependent DNA hel 100.0 5.1E-42 1.1E-46 385.1 34.8 314 118-464 248-587 (681)
55 KOG0349 Putative DEAD-box RNA 100.0 8.4E-44 1.8E-48 350.6 16.9 277 186-466 285-615 (725)
56 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.9E-41 2.1E-45 375.5 33.1 298 135-466 6-336 (819)
57 TIGR01054 rgy reverse gyrase. 100.0 2.2E-40 4.8E-45 385.3 34.1 289 118-438 65-409 (1171)
58 PRK11664 ATP-dependent RNA hel 100.0 1.7E-40 3.8E-45 374.5 29.0 297 136-466 10-339 (812)
59 COG0514 RecQ Superfamily II DN 100.0 3.7E-40 8E-45 349.8 28.0 328 122-475 7-347 (590)
60 PRK12898 secA preprotein trans 100.0 6.2E-40 1.3E-44 354.9 29.7 321 127-472 100-592 (656)
61 PRK14701 reverse gyrase; Provi 100.0 6E-40 1.3E-44 388.4 28.2 322 119-471 67-462 (1638)
62 PRK09200 preprotein translocas 100.0 2E-38 4.3E-43 350.3 33.6 321 127-471 75-546 (790)
63 TIGR01587 cas3_core CRISPR-ass 100.0 9.8E-39 2.1E-43 336.1 24.7 296 148-466 1-336 (358)
64 TIGR00963 secA preprotein tran 100.0 5.4E-38 1.2E-42 341.3 26.8 320 127-471 53-522 (745)
65 TIGR03714 secA2 accessory Sec 100.0 1.9E-37 4.1E-42 339.2 29.2 320 127-470 67-541 (762)
66 PHA02558 uvsW UvsW helicase; P 100.0 1.6E-37 3.5E-42 338.2 27.2 307 129-463 112-449 (501)
67 COG1204 Superfamily II helicas 100.0 4.9E-37 1.1E-41 342.2 27.7 334 115-466 15-408 (766)
68 COG1202 Superfamily II helicas 100.0 3.6E-37 7.7E-42 313.9 23.7 341 106-467 191-554 (830)
69 COG1111 MPH1 ERCC4-like helica 100.0 3.3E-36 7.1E-41 305.6 29.9 321 128-466 12-481 (542)
70 PRK11131 ATP-dependent RNA hel 100.0 1.6E-36 3.4E-41 347.3 27.4 294 135-466 78-411 (1294)
71 PRK13766 Hef nuclease; Provisi 100.0 7.2E-35 1.6E-39 335.9 34.0 319 128-466 12-479 (773)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 6.7E-35 1.4E-39 304.2 28.5 289 135-451 1-357 (357)
73 COG1205 Distinct helicase fami 100.0 1.6E-34 3.4E-39 326.6 29.7 334 116-466 55-422 (851)
74 KOG0351 ATP-dependent DNA heli 100.0 1.1E-33 2.4E-38 317.1 27.4 330 122-475 255-602 (941)
75 KOG0352 ATP-dependent DNA heli 100.0 6.3E-34 1.4E-38 280.8 19.7 330 119-475 6-372 (641)
76 KOG0354 DEAD-box like helicase 100.0 4E-33 8.6E-38 299.3 25.6 322 128-466 59-529 (746)
77 TIGR00603 rad25 DNA repair hel 100.0 1.2E-32 2.7E-37 301.6 29.2 306 130-466 254-607 (732)
78 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.9E-32 6.3E-37 313.6 29.0 305 128-466 61-404 (1283)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 6E-32 1.3E-36 292.7 29.1 337 125-473 104-499 (1230)
80 PRK05580 primosome assembly pr 100.0 3.8E-31 8.3E-36 296.1 34.8 315 130-473 143-557 (679)
81 PRK13104 secA preprotein trans 100.0 1.8E-31 3.8E-36 294.2 27.3 324 127-470 79-591 (896)
82 KOG0353 ATP-dependent DNA heli 100.0 2.2E-31 4.8E-36 259.1 23.1 335 108-466 70-467 (695)
83 PRK04914 ATP-dependent helicas 100.0 2.7E-30 5.9E-35 292.7 34.7 356 130-504 151-644 (956)
84 PRK12899 secA preprotein trans 100.0 2E-30 4.3E-35 285.2 29.6 149 111-274 64-228 (970)
85 cd00268 DEADc DEAD-box helicas 100.0 1.4E-30 3.1E-35 251.6 25.0 197 111-317 1-197 (203)
86 COG1200 RecG RecG-like helicas 100.0 4.2E-30 9.1E-35 272.1 28.4 321 114-467 245-592 (677)
87 KOG0948 Nuclear exosomal RNA h 100.0 1.8E-31 3.9E-36 279.3 17.5 308 130-466 128-539 (1041)
88 KOG0947 Cytoplasmic exosomal R 100.0 6.3E-30 1.4E-34 273.9 25.7 308 130-466 296-723 (1248)
89 PRK12904 preprotein translocas 100.0 2.7E-29 5.9E-34 277.0 29.3 319 127-471 78-578 (830)
90 PRK12906 secA preprotein trans 100.0 2.9E-29 6.2E-34 275.7 25.9 320 127-471 77-558 (796)
91 PRK09694 helicase Cas3; Provis 100.0 6.3E-29 1.4E-33 280.0 28.6 311 129-455 284-664 (878)
92 TIGR00595 priA primosomal prot 100.0 7.6E-29 1.6E-33 268.1 26.4 291 150-471 1-387 (505)
93 COG4581 Superfamily II RNA hel 100.0 1.6E-28 3.4E-33 273.9 26.3 316 125-466 114-537 (1041)
94 KOG0951 RNA helicase BRR2, DEA 100.0 1.4E-28 3.1E-33 269.5 24.2 337 116-466 296-702 (1674)
95 PRK13107 preprotein translocas 100.0 6.2E-28 1.4E-32 265.4 24.3 324 127-470 79-595 (908)
96 COG1061 SSL2 DNA or RNA helica 100.0 1.8E-27 3.9E-32 254.5 24.3 293 129-452 34-375 (442)
97 COG1197 Mfd Transcription-repa 100.0 2.8E-26 6E-31 256.0 31.1 320 114-466 577-913 (1139)
98 PF00270 DEAD: DEAD/DEAH box h 100.0 7.5E-27 1.6E-31 218.7 21.2 167 133-310 1-168 (169)
99 KOG0922 DEAH-box RNA helicase 99.9 3.9E-26 8.5E-31 239.6 21.6 302 133-466 53-390 (674)
100 KOG0950 DNA polymerase theta/e 99.9 1.1E-25 2.3E-30 243.7 20.6 327 120-473 212-619 (1008)
101 COG1643 HrpA HrpA-like helicas 99.9 5.8E-25 1.3E-29 244.3 25.5 303 133-466 52-387 (845)
102 COG4098 comFA Superfamily II D 99.9 3.4E-24 7.3E-29 207.5 27.2 299 131-466 97-416 (441)
103 PRK11448 hsdR type I restricti 99.9 2.8E-24 6E-29 249.3 27.8 306 130-454 412-801 (1123)
104 KOG0923 mRNA splicing factor A 99.9 2.9E-24 6.4E-29 223.0 22.5 304 128-466 262-606 (902)
105 KOG0926 DEAH-box RNA helicase 99.9 7.3E-25 1.6E-29 231.2 15.4 306 137-466 262-704 (1172)
106 PLN03142 Probable chromatin-re 99.9 1.7E-23 3.7E-28 238.3 26.3 316 131-466 169-599 (1033)
107 PRK12900 secA preprotein trans 99.9 9E-24 1.9E-28 233.5 21.7 123 347-471 581-716 (1025)
108 COG1110 Reverse gyrase [DNA re 99.9 1.1E-21 2.4E-26 213.7 32.5 346 122-499 73-596 (1187)
109 TIGR01407 dinG_rel DnaQ family 99.9 1.5E-21 3.2E-26 225.6 32.9 343 116-477 231-828 (850)
110 KOG0924 mRNA splicing factor A 99.9 1.9E-22 4.2E-27 209.8 22.5 308 127-466 352-697 (1042)
111 TIGR00631 uvrb excinuclease AB 99.9 7.2E-22 1.6E-26 218.8 25.7 125 350-475 429-563 (655)
112 KOG0920 ATP-dependent RNA heli 99.9 4.9E-22 1.1E-26 220.0 22.9 324 118-466 160-544 (924)
113 COG1203 CRISPR-associated heli 99.9 1.5E-21 3.2E-26 221.1 23.2 323 131-466 195-550 (733)
114 PRK05298 excinuclease ABC subu 99.9 1.3E-20 2.9E-25 210.4 25.9 135 350-485 433-586 (652)
115 COG0556 UvrB Helicase subunit 99.9 8.6E-21 1.9E-25 193.8 21.9 163 294-466 386-557 (663)
116 COG1198 PriA Primosomal protei 99.9 3.6E-20 7.8E-25 203.4 27.8 317 130-475 197-613 (730)
117 PRK12326 preprotein translocas 99.9 7.5E-20 1.6E-24 197.4 28.5 323 127-473 75-554 (764)
118 PRK13103 secA preprotein trans 99.9 1.4E-19 3E-24 200.0 26.6 325 127-471 79-596 (913)
119 KOG0925 mRNA splicing factor A 99.9 2.6E-20 5.6E-25 187.7 18.7 318 108-466 24-387 (699)
120 smart00487 DEXDc DEAD-like hel 99.8 3.3E-19 7.2E-24 170.6 21.7 179 126-317 3-183 (201)
121 KOG0385 Chromatin remodeling c 99.8 1.2E-18 2.6E-23 184.4 24.2 326 131-476 167-612 (971)
122 KOG0949 Predicted helicase, DE 99.8 2.1E-19 4.5E-24 194.0 18.8 159 131-306 511-673 (1330)
123 PRK07246 bifunctional ATP-depe 99.8 3E-18 6.5E-23 195.5 27.1 328 126-477 241-797 (820)
124 KOG0387 Transcription-coupled 99.8 4E-18 8.7E-23 181.4 22.3 323 114-466 196-658 (923)
125 PRK12903 secA preprotein trans 99.8 1.1E-17 2.5E-22 183.0 25.2 324 127-470 75-543 (925)
126 TIGR00348 hsdR type I site-spe 99.8 4.1E-17 9E-22 183.2 26.5 309 132-465 239-650 (667)
127 CHL00122 secA preprotein trans 99.8 4.5E-17 9.7E-22 179.5 25.9 130 127-274 73-209 (870)
128 COG4096 HsdR Type I site-speci 99.8 1.4E-17 3.1E-22 179.5 18.2 294 129-453 163-525 (875)
129 KOG4150 Predicted ATP-dependen 99.8 4.1E-17 8.9E-22 167.2 20.4 346 124-486 279-663 (1034)
130 TIGR03117 cas_csf4 CRISPR-asso 99.8 4.2E-16 9.1E-21 170.4 29.5 114 362-477 469-629 (636)
131 KOG0392 SNF2 family DNA-depend 99.7 4.4E-17 9.6E-22 179.8 19.0 332 131-476 975-1466(1549)
132 KOG0390 DNA repair protein, SN 99.7 1.7E-16 3.7E-21 173.5 22.9 320 131-466 238-707 (776)
133 PF06862 DUF1253: Protein of u 99.7 9.1E-16 2E-20 159.7 26.0 289 186-478 36-425 (442)
134 PRK12902 secA preprotein trans 99.7 4E-16 8.7E-21 171.6 24.2 130 127-274 82-218 (939)
135 KOG0384 Chromodomain-helicase 99.7 2.6E-17 5.7E-22 182.3 14.3 313 130-466 369-811 (1373)
136 KOG2340 Uncharacterized conser 99.7 2.8E-16 6.1E-21 160.4 19.5 337 129-466 214-668 (698)
137 KOG1123 RNA polymerase II tran 99.7 1.3E-16 2.8E-21 161.7 15.9 308 130-466 301-653 (776)
138 PRK08074 bifunctional ATP-depe 99.7 2.9E-15 6.3E-20 174.2 29.4 116 362-477 751-907 (928)
139 cd00079 HELICc Helicase superf 99.7 5.1E-17 1.1E-21 144.9 11.3 124 338-462 3-131 (131)
140 cd00046 DEXDc DEAD-like helica 99.7 1.7E-15 3.8E-20 136.2 17.2 144 147-304 1-144 (144)
141 KOG0953 Mitochondrial RNA heli 99.7 8.8E-16 1.9E-20 157.9 16.2 295 145-493 190-505 (700)
142 PF00271 Helicase_C: Helicase 99.7 9.2E-17 2E-21 129.5 6.6 70 385-454 9-78 (78)
143 KOG0389 SNF2 family DNA-depend 99.7 6.9E-15 1.5E-19 156.9 20.6 325 132-475 400-899 (941)
144 COG4889 Predicted helicase [Ge 99.6 5.8E-16 1.3E-20 165.7 11.6 327 119-463 149-585 (1518)
145 PRK12901 secA preprotein trans 99.6 7.9E-15 1.7E-19 163.1 19.1 118 351-470 616-745 (1112)
146 KOG1000 Chromatin remodeling p 99.6 8.6E-14 1.9E-18 141.3 23.6 325 129-477 196-617 (689)
147 COG1199 DinG Rad3-related DNA 99.6 2.3E-13 4.9E-18 154.6 25.6 105 362-466 478-617 (654)
148 KOG0951 RNA helicase BRR2, DEA 99.6 4.9E-14 1.1E-18 156.5 19.1 309 131-473 1143-1502(1674)
149 PF04851 ResIII: Type III rest 99.6 1.2E-14 2.7E-19 137.5 12.7 152 131-305 3-183 (184)
150 PRK11747 dinG ATP-dependent DN 99.5 3.3E-12 7.1E-17 144.3 30.0 112 362-476 533-687 (697)
151 KOG0391 SNF2 family DNA-depend 99.5 9.1E-13 2E-17 144.9 21.9 120 347-466 1259-1387(1958)
152 PRK14873 primosome assembly pr 99.5 1.1E-12 2.5E-17 145.4 23.1 282 152-473 166-546 (665)
153 KOG1002 Nucleotide excision re 99.5 1.5E-12 3.2E-17 132.2 20.4 119 364-482 639-767 (791)
154 smart00490 HELICc helicase sup 99.5 7.3E-14 1.6E-18 113.4 6.5 70 385-454 13-82 (82)
155 TIGR02562 cas3_yersinia CRISPR 99.5 2.5E-12 5.5E-17 144.1 19.9 322 129-466 406-895 (1110)
156 TIGR00604 rad3 DNA repair heli 99.4 3.6E-11 7.9E-16 136.9 26.1 72 129-210 8-83 (705)
157 KOG0386 Chromatin remodeling c 99.4 1.4E-12 3E-17 142.8 9.5 317 130-466 393-838 (1157)
158 PF08152 GUCT: GUCT (NUC152) d 99.3 2.1E-12 4.6E-17 106.8 4.6 77 543-619 1-77 (97)
159 PF02399 Herpes_ori_bp: Origin 99.3 2.4E-10 5.3E-15 125.4 21.2 288 146-466 49-388 (824)
160 COG0653 SecA Preprotein transl 99.2 3.1E-10 6.7E-15 125.4 19.0 322 131-471 80-550 (822)
161 KOG0388 SNF2 family DNA-depend 99.2 3.5E-10 7.6E-15 119.6 16.9 120 347-466 1027-1154(1185)
162 KOG0921 Dosage compensation co 99.2 1.8E-10 3.8E-15 124.8 13.7 304 138-466 385-774 (1282)
163 KOG1015 Transcription regulato 99.2 4.1E-10 8.8E-15 122.4 15.6 118 349-466 1127-1277(1567)
164 PF07652 Flavi_DEAD: Flaviviru 99.2 2.2E-10 4.7E-15 100.4 9.9 137 145-308 3-140 (148)
165 COG0553 HepA Superfamily II DN 99.1 1.1E-09 2.4E-14 129.2 19.3 119 348-466 692-822 (866)
166 KOG4439 RNA polymerase II tran 99.1 8.4E-10 1.8E-14 117.1 15.4 114 362-475 745-869 (901)
167 PF00176 SNF2_N: SNF2 family N 99.1 6.2E-10 1.3E-14 114.1 13.7 154 135-304 1-172 (299)
168 smart00488 DEXDc2 DEAD-like he 99.1 1.3E-09 2.8E-14 110.4 14.1 73 131-210 8-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 1.3E-09 2.8E-14 110.4 14.1 73 131-210 8-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 5.3E-09 1.2E-13 103.1 15.2 130 127-274 74-210 (266)
171 PF03880 DbpA: DbpA RNA bindin 98.7 1.8E-08 3.9E-13 79.6 4.4 58 560-620 1-59 (74)
172 COG0610 Type I site-specific r 98.7 3.1E-06 6.7E-11 98.8 23.5 137 147-304 274-413 (962)
173 TIGR00596 rad1 DNA repair prot 98.4 4.7E-06 1E-10 94.8 16.8 68 234-303 4-71 (814)
174 KOG0952 DNA/RNA helicase MER3/ 98.4 1.1E-07 2.4E-12 105.6 3.2 259 132-410 928-1206(1230)
175 PRK15483 type III restriction- 98.4 2.5E-06 5.4E-11 97.1 12.9 69 409-477 501-580 (986)
176 PF13086 AAA_11: AAA domain; P 98.3 1.7E-06 3.8E-11 84.9 8.6 74 131-209 1-75 (236)
177 KOG1016 Predicted DNA helicase 98.2 2.5E-05 5.4E-10 84.4 15.0 98 364-461 720-842 (1387)
178 PF13604 AAA_30: AAA domain; P 98.2 9.9E-06 2.1E-10 77.4 10.8 122 131-301 1-128 (196)
179 KOG1132 Helicase of the DEAD s 98.2 8.1E-06 1.8E-10 90.0 9.9 142 130-275 20-261 (945)
180 KOG1802 RNA helicase nonsense 98.1 3.3E-05 7.1E-10 82.5 13.9 82 125-222 404-485 (935)
181 COG3587 Restriction endonuclea 98.1 7.5E-05 1.6E-09 82.3 16.8 71 408-478 482-566 (985)
182 PF02562 PhoH: PhoH-like prote 98.1 5.5E-06 1.2E-10 78.7 6.4 144 129-300 2-152 (205)
183 PF13872 AAA_34: P-loop contai 98.0 8E-05 1.7E-09 74.0 13.4 177 108-310 20-226 (303)
184 PF13307 Helicase_C_2: Helicas 98.0 2.3E-05 4.9E-10 72.8 8.4 108 355-466 3-150 (167)
185 KOG1803 DNA helicase [Replicat 97.9 5.3E-05 1.2E-09 80.6 10.7 65 130-207 184-249 (649)
186 KOG1001 Helicase-like transcri 97.9 8.7E-05 1.9E-09 82.8 11.6 113 364-476 540-662 (674)
187 PF09848 DUF2075: Uncharacteri 97.9 7.2E-05 1.6E-09 78.4 10.3 108 148-288 3-117 (352)
188 TIGR00376 DNA helicase, putati 97.8 0.00014 3.1E-09 81.6 12.9 67 130-209 156-223 (637)
189 PRK10536 hypothetical protein; 97.8 0.00024 5.3E-09 69.4 12.1 145 127-299 55-208 (262)
190 PF14617 CMS1: U3-containing 9 97.7 9.4E-05 2E-09 72.3 7.9 88 184-272 123-212 (252)
191 PF13245 AAA_19: Part of AAA d 97.7 0.00014 3E-09 57.7 7.0 60 139-207 2-62 (76)
192 PRK10875 recD exonuclease V su 97.7 0.00045 9.7E-09 76.9 13.3 139 132-301 153-299 (615)
193 PF12340 DUF3638: Protein of u 97.7 0.00041 9E-09 66.5 11.3 150 111-275 5-186 (229)
194 TIGR01447 recD exodeoxyribonuc 97.6 0.0008 1.7E-08 74.7 14.0 139 133-301 147-293 (586)
195 TIGR01448 recD_rel helicase, p 97.5 0.00098 2.1E-08 76.2 13.6 129 130-301 322-450 (720)
196 PRK13889 conjugal transfer rel 97.3 0.0036 7.9E-08 73.0 14.5 127 127-303 343-470 (988)
197 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0063 1.4E-07 69.9 15.0 123 130-301 351-474 (744)
198 COG3421 Uncharacterized protei 97.2 0.0017 3.6E-08 69.2 9.0 152 152-316 3-176 (812)
199 PF13401 AAA_22: AAA domain; P 97.1 0.0012 2.5E-08 58.4 6.9 22 145-166 3-24 (131)
200 PF00580 UvrD-helicase: UvrD/R 97.1 0.0014 3.1E-08 67.3 8.3 123 132-271 1-125 (315)
201 PRK04296 thymidine kinase; Pro 97.1 0.002 4.3E-08 61.2 8.1 109 147-303 3-114 (190)
202 cd00009 AAA The AAA+ (ATPases 96.8 0.017 3.8E-07 51.3 11.9 17 146-162 19-35 (151)
203 PRK13826 Dtr system oriT relax 96.8 0.024 5.2E-07 66.8 15.2 139 115-303 366-505 (1102)
204 PRK08181 transposase; Validate 96.7 0.021 4.6E-07 57.1 12.2 23 143-165 103-125 (269)
205 PRK06526 transposase; Provisio 96.7 0.0089 1.9E-07 59.4 9.4 31 142-172 94-124 (254)
206 PRK11889 flhF flagellar biosyn 96.7 0.044 9.6E-07 57.1 14.5 129 147-316 242-375 (436)
207 KOG1805 DNA replication helica 96.7 0.0076 1.7E-07 67.9 9.4 125 129-274 667-809 (1100)
208 PRK14974 cell division protein 96.6 0.021 4.7E-07 58.9 12.1 55 260-316 221-276 (336)
209 PRK12723 flagellar biosynthesi 96.6 0.046 1E-06 57.5 14.6 133 146-316 174-310 (388)
210 PF05970 PIF1: PIF1-like helic 96.6 0.0089 1.9E-07 62.9 9.4 123 131-291 1-131 (364)
211 TIGR02760 TraI_TIGR conjugativ 96.6 0.14 3E-06 65.0 21.0 210 131-384 429-647 (1960)
212 PF13871 Helicase_C_4: Helicas 96.5 0.009 2E-07 59.4 8.1 67 400-466 52-127 (278)
213 PRK14722 flhF flagellar biosyn 96.5 0.017 3.7E-07 60.3 10.4 132 146-316 137-270 (374)
214 PRK07952 DNA replication prote 96.4 0.036 7.9E-07 54.6 11.6 44 259-303 160-204 (244)
215 COG1419 FlhF Flagellar GTP-bin 96.4 0.045 9.8E-07 56.9 12.6 132 146-317 203-337 (407)
216 COG1875 NYN ribonuclease and A 96.4 0.015 3.2E-07 59.0 8.7 143 127-300 224-384 (436)
217 KOG0298 DEAD box-containing he 96.4 0.013 2.9E-07 67.7 9.2 156 146-308 374-554 (1394)
218 KOG0701 dsRNA-specific nucleas 96.3 0.0028 6.2E-08 75.9 3.8 91 364-454 293-399 (1606)
219 PHA02533 17 large terminase pr 96.3 0.028 6E-07 61.9 11.2 151 130-304 58-210 (534)
220 smart00382 AAA ATPases associa 96.3 0.0095 2.1E-07 52.6 6.4 19 146-164 2-20 (148)
221 PRK05703 flhF flagellar biosyn 96.2 0.1 2.2E-06 55.9 14.8 130 146-316 221-355 (424)
222 PRK06893 DNA replication initi 96.2 0.016 3.4E-07 56.9 8.0 48 259-307 89-137 (229)
223 KOG0989 Replication factor C, 96.2 0.019 4.1E-07 57.0 8.1 45 256-303 124-168 (346)
224 smart00492 HELICc3 helicase su 96.1 0.017 3.6E-07 51.8 7.0 75 392-466 30-138 (141)
225 PRK05642 DNA replication initi 96.1 0.018 3.9E-07 56.6 7.8 46 259-306 95-141 (234)
226 TIGR01075 uvrD DNA helicase II 96.1 0.02 4.3E-07 66.0 9.2 71 130-211 3-73 (715)
227 PF00448 SRP54: SRP54-type pro 96.0 0.015 3.2E-07 55.4 6.6 55 260-316 82-137 (196)
228 PRK11331 5-methylcytosine-spec 96.0 0.022 4.9E-07 60.4 8.4 33 132-164 180-212 (459)
229 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.046 9.9E-07 53.3 9.8 21 145-165 37-57 (226)
230 PF03354 Terminase_1: Phage Te 95.9 0.023 4.9E-07 62.3 8.2 149 134-301 1-160 (477)
231 TIGR01074 rep ATP-dependent DN 95.9 0.03 6.4E-07 64.2 9.5 69 132-211 2-70 (664)
232 cd01120 RecA-like_NTPases RecA 95.9 0.064 1.4E-06 48.9 10.0 21 149-169 2-22 (165)
233 PRK08084 DNA replication initi 95.8 0.043 9.2E-07 54.0 9.0 44 262-306 98-142 (235)
234 PRK11773 uvrD DNA-dependent he 95.8 0.029 6.3E-07 64.7 9.0 71 130-211 8-78 (721)
235 PRK08727 hypothetical protein; 95.8 0.046 1E-06 53.7 9.2 17 147-163 42-58 (233)
236 smart00491 HELICc2 helicase su 95.8 0.02 4.2E-07 51.5 5.8 70 397-466 32-139 (142)
237 TIGR01547 phage_term_2 phage t 95.8 0.039 8.4E-07 58.9 9.1 147 149-317 4-153 (396)
238 PRK11054 helD DNA helicase IV; 95.7 0.041 9E-07 62.5 9.5 71 130-211 195-265 (684)
239 cd01122 GP4d_helicase GP4d_hel 95.7 0.035 7.7E-07 55.9 8.2 120 143-276 27-155 (271)
240 PRK05707 DNA polymerase III su 95.7 0.055 1.2E-06 55.9 9.5 41 131-172 3-47 (328)
241 PRK06921 hypothetical protein; 95.7 0.12 2.6E-06 51.8 11.6 27 145-172 116-142 (266)
242 PRK12377 putative replication 95.7 0.12 2.6E-06 51.1 11.3 47 146-206 101-147 (248)
243 PRK12727 flagellar biosynthesi 95.6 0.53 1.2E-05 51.2 16.8 23 145-167 349-371 (559)
244 PRK10919 ATP-dependent DNA hel 95.6 0.027 5.8E-07 64.3 7.6 70 131-211 2-71 (672)
245 PRK12726 flagellar biosynthesi 95.6 0.29 6.3E-06 51.0 14.2 24 146-169 206-229 (407)
246 cd01124 KaiC KaiC is a circadi 95.6 0.067 1.5E-06 50.3 9.2 49 149-211 2-50 (187)
247 TIGR00064 ftsY signal recognit 95.5 0.18 3.8E-06 50.7 12.2 57 260-316 153-214 (272)
248 PF05876 Terminase_GpA: Phage 95.4 0.024 5.3E-07 62.9 6.2 126 130-274 15-147 (557)
249 PRK14712 conjugal transfer nic 95.4 0.12 2.7E-06 63.1 12.2 63 131-204 835-901 (1623)
250 PRK00771 signal recognition pa 95.4 0.12 2.6E-06 55.3 11.0 53 262-316 176-229 (437)
251 PRK06995 flhF flagellar biosyn 95.4 0.19 4.1E-06 54.4 12.4 23 146-168 256-278 (484)
252 KOG1131 RNA polymerase II tran 95.3 0.1 2.2E-06 55.2 9.8 46 129-174 14-63 (755)
253 PRK06731 flhF flagellar biosyn 95.3 0.52 1.1E-05 47.2 14.5 131 145-316 74-209 (270)
254 PRK14964 DNA polymerase III su 95.3 0.27 5.8E-06 53.4 13.3 43 259-305 114-156 (491)
255 PRK14721 flhF flagellar biosyn 95.3 0.16 3.4E-06 54.0 11.3 23 145-167 190-212 (420)
256 PRK06835 DNA replication prote 95.2 0.22 4.7E-06 51.5 12.0 20 145-164 182-201 (329)
257 PRK08116 hypothetical protein; 95.2 0.52 1.1E-05 47.3 14.5 26 147-173 115-140 (268)
258 PRK12724 flagellar biosynthesi 95.2 0.42 9.1E-06 50.6 14.0 57 260-316 298-357 (432)
259 TIGR02881 spore_V_K stage V sp 95.2 0.12 2.7E-06 51.7 9.8 18 147-164 43-60 (261)
260 PRK13709 conjugal transfer nic 95.1 0.23 5E-06 61.6 13.7 66 130-204 966-1033(1747)
261 COG1435 Tdk Thymidine kinase [ 95.1 0.21 4.5E-06 46.6 10.2 105 147-289 5-109 (201)
262 PRK08903 DnaA regulatory inact 95.1 0.12 2.6E-06 50.5 9.4 44 261-306 90-133 (227)
263 TIGR02785 addA_Gpos recombinat 95.1 0.11 2.3E-06 63.5 10.8 124 131-272 1-126 (1232)
264 PF05127 Helicase_RecD: Helica 95.1 0.011 2.3E-07 54.9 1.7 124 150-305 1-124 (177)
265 PF00308 Bac_DnaA: Bacterial d 95.0 0.1 2.3E-06 50.6 8.5 49 259-308 95-144 (219)
266 KOG0383 Predicted helicase [Ge 95.0 0.0015 3.4E-08 72.2 -4.8 73 350-422 617-696 (696)
267 PRK08769 DNA polymerase III su 95.0 0.24 5.1E-06 50.9 11.4 43 129-172 2-51 (319)
268 PRK14723 flhF flagellar biosyn 95.0 0.19 4.2E-06 57.0 11.5 130 146-316 185-318 (767)
269 PRK00149 dnaA chromosomal repl 94.9 0.27 5.9E-06 53.4 12.3 48 260-308 210-258 (450)
270 COG1444 Predicted P-loop ATPas 94.9 0.12 2.5E-06 58.3 9.4 156 116-305 199-357 (758)
271 CHL00181 cbbX CbbX; Provisiona 94.9 0.5 1.1E-05 47.9 13.3 21 146-166 59-79 (287)
272 PRK13833 conjugal transfer pro 94.8 0.11 2.4E-06 53.3 8.2 66 122-200 121-187 (323)
273 PRK14956 DNA polymerase III su 94.7 0.16 3.5E-06 54.6 9.6 19 148-166 42-60 (484)
274 PRK14955 DNA polymerase III su 94.7 0.8 1.7E-05 48.9 15.0 41 259-303 125-165 (397)
275 PLN03025 replication factor C 94.7 0.32 7E-06 50.2 11.7 18 147-164 35-52 (319)
276 TIGR01425 SRP54_euk signal rec 94.7 0.37 8.1E-06 51.3 12.2 53 262-316 183-236 (429)
277 PF05621 TniB: Bacterial TniB 94.7 0.2 4.4E-06 50.3 9.5 124 147-303 62-188 (302)
278 PRK13894 conjugal transfer ATP 94.7 0.11 2.3E-06 53.5 7.8 68 120-200 123-191 (319)
279 TIGR00362 DnaA chromosomal rep 94.6 0.23 5.1E-06 53.2 10.7 44 261-306 199-243 (405)
280 KOG1133 Helicase of the DEAD s 94.6 1.6 3.6E-05 48.1 16.7 110 353-466 621-780 (821)
281 TIGR03499 FlhF flagellar biosy 94.6 0.079 1.7E-06 53.7 6.7 23 146-168 194-216 (282)
282 PRK12402 replication factor C 94.5 0.24 5.2E-06 51.5 10.3 17 148-164 38-54 (337)
283 COG3973 Superfamily I DNA and 94.5 0.23 5E-06 53.8 9.8 91 115-212 188-285 (747)
284 PRK07764 DNA polymerase III su 94.5 0.44 9.6E-06 55.3 13.0 22 147-168 38-59 (824)
285 TIGR02760 TraI_TIGR conjugativ 94.4 0.26 5.7E-06 62.6 12.0 63 130-204 1018-1085(1960)
286 PTZ00112 origin recognition co 94.3 0.6 1.3E-05 53.5 13.1 27 260-287 868-894 (1164)
287 PRK00411 cdc6 cell division co 94.3 0.17 3.8E-06 53.9 9.0 17 147-163 56-72 (394)
288 PHA02544 44 clamp loader, smal 94.3 0.21 4.5E-06 51.5 9.1 40 261-303 100-139 (316)
289 TIGR00959 ffh signal recogniti 94.2 0.48 1E-05 50.7 11.8 22 148-169 101-122 (428)
290 PRK12422 chromosomal replicati 94.2 0.45 9.8E-06 51.4 11.7 54 259-313 200-254 (445)
291 PHA03333 putative ATPase subun 94.1 0.69 1.5E-05 51.5 12.9 150 131-304 169-332 (752)
292 PRK14087 dnaA chromosomal repl 94.1 0.35 7.7E-06 52.3 10.8 111 147-308 142-253 (450)
293 PRK14088 dnaA chromosomal repl 94.1 0.57 1.2E-05 50.6 12.3 50 261-311 194-244 (440)
294 PRK05563 DNA polymerase III su 94.1 0.37 8E-06 53.7 11.1 43 259-305 117-159 (559)
295 PRK14961 DNA polymerase III su 94.1 0.24 5.2E-06 52.1 9.3 18 148-165 40-57 (363)
296 COG1474 CDC6 Cdc6-related prot 94.1 0.71 1.5E-05 48.5 12.6 54 247-306 113-166 (366)
297 PRK09183 transposase/IS protei 94.0 0.37 8E-06 48.1 9.9 25 143-167 99-123 (259)
298 PRK07003 DNA polymerase III su 94.0 0.42 9E-06 54.1 11.0 18 148-165 40-57 (830)
299 PRK06645 DNA polymerase III su 94.0 0.51 1.1E-05 51.7 11.6 20 147-166 44-63 (507)
300 TIGR02880 cbbX_cfxQ probable R 93.9 0.65 1.4E-05 47.1 11.7 18 146-163 58-75 (284)
301 PRK10416 signal recognition pa 93.9 0.6 1.3E-05 48.1 11.4 57 260-316 195-256 (318)
302 cd00561 CobA_CobO_BtuR ATP:cor 93.9 1.2 2.6E-05 40.7 12.0 53 259-313 93-147 (159)
303 TIGR03015 pepcterm_ATPase puta 93.9 0.58 1.3E-05 46.9 11.2 36 129-164 21-61 (269)
304 PRK14963 DNA polymerase III su 93.8 0.36 7.7E-06 53.0 10.2 41 259-303 114-154 (504)
305 TIGR01073 pcrA ATP-dependent D 93.8 0.15 3.3E-06 58.9 7.8 72 130-212 3-74 (726)
306 PRK14958 DNA polymerase III su 93.8 0.28 6E-06 53.9 9.3 19 148-166 40-58 (509)
307 PF00004 AAA: ATPase family as 93.8 0.65 1.4E-05 40.5 10.2 16 262-277 59-74 (132)
308 TIGR02782 TrbB_P P-type conjug 93.8 0.29 6.2E-06 50.0 8.8 68 120-200 107-175 (299)
309 PRK14954 DNA polymerase III su 93.8 0.75 1.6E-05 51.7 12.7 41 259-303 125-165 (620)
310 PRK14959 DNA polymerase III su 93.7 0.23 5E-06 55.3 8.5 44 259-306 117-160 (624)
311 PRK14949 DNA polymerase III su 93.7 0.4 8.7E-06 55.2 10.5 17 149-165 41-57 (944)
312 PRK14962 DNA polymerase III su 93.7 0.22 4.8E-06 54.1 8.2 18 148-165 38-55 (472)
313 PRK14951 DNA polymerase III su 93.7 1.3 2.8E-05 49.7 14.3 43 260-306 123-165 (618)
314 PRK06964 DNA polymerase III su 93.6 0.73 1.6E-05 47.8 11.6 41 132-173 2-47 (342)
315 COG0470 HolB ATPase involved i 93.6 0.79 1.7E-05 47.2 12.1 41 259-303 107-147 (325)
316 PRK08533 flagellar accessory p 93.6 0.88 1.9E-05 44.5 11.7 53 144-210 22-74 (230)
317 PRK14960 DNA polymerase III su 93.6 0.28 6E-06 54.7 8.8 20 147-166 38-57 (702)
318 PRK07940 DNA polymerase III su 93.5 0.19 4.1E-06 53.2 7.3 44 259-306 115-158 (394)
319 KOG0991 Replication factor C, 93.5 0.16 3.5E-06 48.5 5.8 18 147-164 49-66 (333)
320 COG4962 CpaF Flp pilus assembl 93.5 0.17 3.6E-06 51.5 6.3 62 128-203 154-216 (355)
321 PRK05986 cob(I)alamin adenolsy 93.5 1.3 2.7E-05 41.8 11.8 146 144-313 20-167 (191)
322 PRK08939 primosomal protein Dn 93.5 0.48 1E-05 48.5 9.9 20 146-165 156-175 (306)
323 PRK09111 DNA polymerase III su 93.4 0.4 8.6E-06 53.7 9.8 21 147-167 47-67 (598)
324 PRK07994 DNA polymerase III su 93.3 0.33 7E-06 54.5 9.0 19 149-167 41-59 (647)
325 PTZ00293 thymidine kinase; Pro 93.3 0.56 1.2E-05 44.9 9.3 38 146-196 4-41 (211)
326 PRK10867 signal recognition pa 93.3 0.69 1.5E-05 49.6 11.0 54 261-316 183-237 (433)
327 PF13173 AAA_14: AAA domain 93.3 0.98 2.1E-05 39.6 10.4 37 261-303 61-97 (128)
328 PRK06871 DNA polymerase III su 93.3 0.33 7.1E-06 50.0 8.3 35 132-166 3-44 (325)
329 PF07728 AAA_5: AAA domain (dy 93.3 0.023 5.1E-07 50.7 -0.1 15 148-162 1-15 (139)
330 PRK10917 ATP-dependent DNA hel 93.2 0.16 3.5E-06 58.2 6.6 90 344-433 290-389 (681)
331 PHA03368 DNA packaging termina 93.2 0.74 1.6E-05 51.1 11.2 134 147-306 255-392 (738)
332 PRK09112 DNA polymerase III su 93.2 0.58 1.3E-05 48.9 10.2 25 148-173 47-71 (351)
333 PRK13342 recombination factor 93.2 0.55 1.2E-05 50.4 10.3 39 261-306 92-130 (413)
334 PRK06090 DNA polymerase III su 93.2 0.68 1.5E-05 47.5 10.4 41 131-172 3-50 (319)
335 PRK08699 DNA polymerase III su 93.2 0.81 1.7E-05 47.3 11.0 35 132-166 2-41 (325)
336 PRK14950 DNA polymerase III su 93.2 0.74 1.6E-05 51.7 11.6 41 259-303 118-158 (585)
337 PF01695 IstB_IS21: IstB-like 93.1 0.21 4.6E-06 46.7 6.2 46 144-203 45-90 (178)
338 PRK05896 DNA polymerase III su 93.0 0.6 1.3E-05 51.8 10.3 20 147-166 39-58 (605)
339 TIGR00708 cobA cob(I)alamin ad 93.0 0.47 1E-05 43.9 8.0 53 259-313 95-149 (173)
340 cd03115 SRP The signal recogni 93.0 1.3 2.7E-05 41.2 11.2 55 260-316 81-136 (173)
341 PF05496 RuvB_N: Holliday junc 92.9 0.85 1.8E-05 43.9 9.8 17 147-163 51-67 (233)
342 COG2804 PulE Type II secretory 92.9 0.21 4.6E-06 53.4 6.4 42 133-175 243-286 (500)
343 COG2256 MGS1 ATPase related to 92.9 0.37 7.9E-06 49.9 7.8 37 263-306 106-142 (436)
344 PF13177 DNA_pol3_delta2: DNA 92.8 0.33 7.2E-06 44.6 6.9 43 260-306 101-143 (162)
345 PRK12323 DNA polymerase III su 92.8 0.31 6.8E-06 54.2 7.7 19 148-166 40-58 (700)
346 TIGR02928 orc1/cdc6 family rep 92.8 0.36 7.9E-06 50.8 8.2 17 147-163 41-57 (365)
347 COG2805 PilT Tfp pilus assembl 92.8 0.21 4.6E-06 49.7 5.7 52 106-176 103-154 (353)
348 PRK08691 DNA polymerase III su 92.7 0.54 1.2E-05 52.8 9.5 20 147-166 39-58 (709)
349 PRK13900 type IV secretion sys 92.7 0.32 6.9E-06 50.4 7.2 45 143-201 157-201 (332)
350 PRK13851 type IV secretion sys 92.6 0.19 4.2E-06 52.1 5.6 44 143-200 159-202 (344)
351 PRK14086 dnaA chromosomal repl 92.5 0.9 1.9E-05 50.5 10.8 49 259-308 375-424 (617)
352 PRK13341 recombination factor 92.5 0.64 1.4E-05 53.2 10.0 47 261-314 109-155 (725)
353 PRK07471 DNA polymerase III su 92.5 0.87 1.9E-05 47.8 10.3 25 147-172 42-66 (365)
354 PRK07993 DNA polymerase III su 92.4 0.34 7.4E-06 50.2 7.0 41 131-172 2-49 (334)
355 PRK14957 DNA polymerase III su 92.3 0.93 2E-05 50.1 10.5 20 148-167 40-59 (546)
356 PRK14952 DNA polymerase III su 92.2 1.1 2.3E-05 50.0 11.1 20 148-167 37-56 (584)
357 cd00984 DnaB_C DnaB helicase C 92.2 0.97 2.1E-05 44.5 9.8 30 144-173 11-40 (242)
358 TIGR00678 holB DNA polymerase 92.2 1.3 2.9E-05 41.7 10.4 41 259-303 94-134 (188)
359 COG0593 DnaA ATPase involved i 92.2 0.84 1.8E-05 48.1 9.6 48 261-309 175-223 (408)
360 KOG0344 ATP-dependent RNA heli 92.1 3.9 8.5E-05 44.4 14.5 98 154-271 365-466 (593)
361 PRK04195 replication factor C 92.1 0.89 1.9E-05 49.9 10.3 18 146-163 39-56 (482)
362 PRK11823 DNA repair protein Ra 92.1 0.71 1.5E-05 49.9 9.3 53 145-211 79-131 (446)
363 PRK05580 primosome assembly pr 92.1 0.34 7.4E-06 55.4 7.2 90 345-435 171-266 (679)
364 KOG1133 Helicase of the DEAD s 91.9 0.23 5E-06 54.5 5.1 42 130-171 14-59 (821)
365 KOG0733 Nuclear AAA ATPase (VC 91.8 0.74 1.6E-05 50.2 8.7 47 260-306 603-657 (802)
366 COG4626 Phage terminase-like p 91.8 1.3 2.9E-05 48.0 10.6 147 130-302 60-223 (546)
367 KOG0745 Putative ATP-dependent 91.7 0.2 4.4E-06 52.1 4.4 27 145-173 225-251 (564)
368 PRK14965 DNA polymerase III su 91.7 1.6 3.4E-05 49.0 11.8 18 148-165 40-57 (576)
369 PF02534 T4SS-DNA_transf: Type 91.7 0.23 5.1E-06 54.3 5.3 50 147-211 45-94 (469)
370 PRK00440 rfc replication facto 91.6 2.2 4.7E-05 43.8 12.2 17 148-164 40-56 (319)
371 PRK06647 DNA polymerase III su 91.6 1.4 3E-05 49.1 11.1 42 259-304 117-158 (563)
372 PRK07399 DNA polymerase III su 91.6 2 4.3E-05 44.2 11.5 129 147-301 27-160 (314)
373 TIGR00595 priA primosomal prot 91.6 0.39 8.5E-06 52.8 6.8 87 347-434 8-100 (505)
374 COG1484 DnaC DNA replication p 91.4 0.5 1.1E-05 47.0 6.7 50 145-208 104-153 (254)
375 TIGR03877 thermo_KaiC_1 KaiC d 91.4 0.32 7E-06 47.8 5.4 53 145-211 20-72 (237)
376 TIGR03881 KaiC_arch_4 KaiC dom 91.3 1.6 3.5E-05 42.5 10.2 52 145-210 19-70 (229)
377 cd01126 TraG_VirD4 The TraG/Tr 91.2 0.14 3.1E-06 54.4 2.8 48 148-210 1-48 (384)
378 PRK14948 DNA polymerase III su 91.2 1 2.2E-05 50.8 9.6 20 147-166 39-58 (620)
379 COG0466 Lon ATP-dependent Lon 91.2 0.46 9.9E-06 52.8 6.5 62 221-289 382-445 (782)
380 TIGR00580 mfd transcription-re 91.1 0.39 8.5E-06 56.5 6.5 89 345-433 481-579 (926)
381 COG0552 FtsY Signal recognitio 91.1 2.8 6E-05 42.7 11.5 133 148-316 141-281 (340)
382 PRK07133 DNA polymerase III su 91.1 0.8 1.7E-05 52.0 8.6 44 259-306 116-159 (725)
383 PRK10689 transcription-repair 91.1 1.7 3.7E-05 52.5 11.9 79 187-273 809-891 (1147)
384 TIGR00643 recG ATP-dependent D 91.1 0.34 7.4E-06 55.0 5.8 89 345-433 265-363 (630)
385 PRK14953 DNA polymerase III su 91.0 1.1 2.4E-05 49.0 9.4 41 259-303 117-157 (486)
386 COG2109 BtuR ATP:corrinoid ade 91.0 2 4.2E-05 40.0 9.4 142 149-315 31-176 (198)
387 PHA00729 NTP-binding motif con 90.9 2.2 4.8E-05 41.3 10.3 16 148-163 19-34 (226)
388 KOG1513 Nuclear helicase MOP-3 90.8 0.26 5.6E-06 54.8 4.2 158 129-303 262-453 (1300)
389 PRK06904 replicative DNA helic 90.8 2.9 6.3E-05 45.6 12.4 117 143-274 218-347 (472)
390 TIGR03600 phage_DnaB phage rep 90.7 1.8 4E-05 46.5 10.8 40 128-168 176-215 (421)
391 PRK14969 DNA polymerase III su 90.6 1.1 2.4E-05 49.6 9.1 19 148-166 40-58 (527)
392 PRK10436 hypothetical protein; 90.5 1.2 2.5E-05 48.4 8.9 47 123-173 196-244 (462)
393 cd01121 Sms Sms (bacterial rad 90.3 1.5 3.2E-05 46.2 9.3 91 145-274 81-171 (372)
394 PRK14971 DNA polymerase III su 90.3 1.7 3.8E-05 48.9 10.4 41 259-303 119-159 (614)
395 PF06745 KaiC: KaiC; InterPro 90.2 0.4 8.7E-06 46.7 4.7 130 145-303 18-159 (226)
396 PRK05973 replicative DNA helic 90.2 0.53 1.1E-05 46.1 5.5 55 142-210 60-114 (237)
397 PRK13897 type IV secretion sys 90.1 0.28 6.1E-06 54.8 3.9 49 147-210 159-207 (606)
398 TIGR01650 PD_CobS cobaltochela 90.1 1 2.2E-05 46.2 7.6 25 139-163 57-81 (327)
399 cd01130 VirB11-like_ATPase Typ 90.1 0.74 1.6E-05 43.4 6.3 38 124-163 4-42 (186)
400 PRK08451 DNA polymerase III su 90.0 1.7 3.7E-05 47.8 9.8 18 148-165 38-55 (535)
401 PF06733 DEAD_2: DEAD_2; Inte 90.0 0.2 4.3E-06 46.8 2.2 44 232-275 114-159 (174)
402 PF05729 NACHT: NACHT domain 89.9 2.5 5.3E-05 38.4 9.6 26 148-174 2-27 (166)
403 PF02572 CobA_CobO_BtuR: ATP:c 89.8 5.4 0.00012 37.0 11.4 140 149-312 6-147 (172)
404 KOG0742 AAA+-type ATPase [Post 89.7 0.67 1.5E-05 48.0 5.9 16 147-162 385-400 (630)
405 KOG2036 Predicted P-loop ATPas 89.7 7.4 0.00016 43.2 13.9 134 133-305 255-412 (1011)
406 TIGR03819 heli_sec_ATPase heli 89.7 0.85 1.8E-05 47.4 6.9 65 120-200 153-218 (340)
407 COG1221 PspF Transcriptional r 89.7 1.4 3.1E-05 46.3 8.5 21 144-164 99-119 (403)
408 KOG2170 ATPase of the AAA+ sup 89.7 1.2 2.6E-05 44.5 7.3 54 263-317 180-238 (344)
409 COG1198 PriA Primosomal protei 89.6 0.97 2.1E-05 51.3 7.7 91 342-433 223-319 (730)
410 KOG0741 AAA+-type ATPase [Post 89.6 4.7 0.0001 43.4 12.1 69 113-196 493-573 (744)
411 PF03969 AFG1_ATPase: AFG1-lik 89.5 5.4 0.00012 41.8 12.7 110 146-307 62-171 (362)
412 PRK14970 DNA polymerase III su 89.1 2.9 6.4E-05 44.0 10.6 18 147-164 40-57 (367)
413 PRK14873 primosome assembly pr 89.0 1.2 2.5E-05 50.6 7.8 89 346-435 170-265 (665)
414 COG2255 RuvB Holliday junction 89.0 1.4 3E-05 43.7 7.2 27 244-274 90-116 (332)
415 COG0630 VirB11 Type IV secreto 88.9 0.86 1.9E-05 46.8 6.1 59 129-201 125-184 (312)
416 TIGR02397 dnaX_nterm DNA polym 88.8 2.8 6E-05 43.8 10.2 25 147-172 37-61 (355)
417 COG1618 Predicted nucleotide k 88.8 0.31 6.8E-06 44.0 2.5 117 147-288 6-129 (179)
418 PRK11034 clpA ATP-dependent Cl 88.8 3.9 8.5E-05 47.2 11.9 43 263-307 280-326 (758)
419 TIGR00631 uvrb excinuclease AB 88.8 5.9 0.00013 45.1 13.2 116 186-311 441-560 (655)
420 PRK06067 flagellar accessory p 88.7 5.2 0.00011 39.1 11.4 52 146-211 25-76 (234)
421 PRK08506 replicative DNA helic 88.5 2.4 5.2E-05 46.3 9.6 113 145-274 191-315 (472)
422 COG1219 ClpX ATP-dependent pro 88.4 0.27 5.8E-06 49.3 2.0 28 144-173 95-122 (408)
423 COG2909 MalT ATP-dependent tra 88.3 1.4 3E-05 50.1 7.5 43 262-306 130-172 (894)
424 TIGR02524 dot_icm_DotB Dot/Icm 88.1 0.63 1.4E-05 48.7 4.6 27 145-172 133-159 (358)
425 PF00437 T2SE: Type II/IV secr 88.0 0.38 8.2E-06 48.3 2.9 53 136-201 116-169 (270)
426 PRK06305 DNA polymerase III su 88.0 3.9 8.5E-05 44.3 10.8 21 147-167 40-60 (451)
427 PRK09087 hypothetical protein; 87.9 1.8 3.9E-05 42.2 7.4 39 264-306 90-128 (226)
428 cd01125 repA Hexameric Replica 87.8 5.6 0.00012 39.1 11.0 57 148-205 3-62 (239)
429 PRK04328 hypothetical protein; 87.8 1 2.2E-05 44.7 5.7 53 145-211 22-74 (249)
430 PF12846 AAA_10: AAA-like doma 87.7 0.89 1.9E-05 46.1 5.5 43 146-201 1-43 (304)
431 PRK13850 type IV secretion sys 87.7 0.5 1.1E-05 53.5 3.8 49 147-210 140-188 (670)
432 KOG2028 ATPase related to the 87.7 1.6 3.4E-05 44.7 6.8 47 263-316 224-270 (554)
433 TIGR02525 plasmid_TraJ plasmid 87.7 0.92 2E-05 47.6 5.5 27 145-172 148-174 (372)
434 PF03237 Terminase_6: Terminas 87.5 7.1 0.00015 40.7 12.4 142 150-316 1-151 (384)
435 cd03239 ABC_SMC_head The struc 87.3 0.85 1.8E-05 42.7 4.6 43 259-302 114-156 (178)
436 TIGR02012 tigrfam_recA protein 87.2 1.1 2.4E-05 45.9 5.7 29 145-173 54-82 (321)
437 TIGR00635 ruvB Holliday juncti 87.2 0.96 2.1E-05 46.3 5.4 17 147-163 31-47 (305)
438 COG1110 Reverse gyrase [DNA re 87.1 1.1 2.4E-05 51.7 5.9 58 362-419 124-191 (1187)
439 TIGR00767 rho transcription te 87.1 1 2.2E-05 47.4 5.3 27 145-172 167-193 (415)
440 PF01443 Viral_helicase1: Vira 87.0 0.42 9E-06 46.7 2.4 23 413-435 184-206 (234)
441 TIGR00763 lon ATP-dependent pr 87.0 2.2 4.7E-05 49.8 8.7 18 146-163 347-364 (775)
442 TIGR02538 type_IV_pilB type IV 86.7 1.2 2.5E-05 49.9 6.0 46 123-172 294-341 (564)
443 PRK05748 replicative DNA helic 86.6 4.2 9.1E-05 44.2 10.1 27 144-171 201-227 (448)
444 PRK07004 replicative DNA helic 86.6 2.4 5.2E-05 46.1 8.2 26 144-170 211-236 (460)
445 PHA00350 putative assembly pro 86.4 2.1 4.6E-05 45.2 7.3 26 149-174 4-30 (399)
446 PLN00020 ribulose bisphosphate 86.4 0.51 1.1E-05 48.9 2.7 17 147-163 149-165 (413)
447 TIGR02639 ClpA ATP-dependent C 86.3 7.2 0.00016 45.2 12.4 36 128-163 179-220 (731)
448 cd01129 PulE-GspE PulE/GspE Th 86.3 1.7 3.7E-05 43.5 6.4 46 123-172 58-105 (264)
449 COG5008 PilU Tfp pilus assembl 86.2 0.64 1.4E-05 45.4 3.1 16 149-164 130-145 (375)
450 TIGR00665 DnaB replicative DNA 86.1 4.2 9.2E-05 43.9 9.9 25 145-170 194-218 (434)
451 PRK08058 DNA polymerase III su 86.1 3.1 6.7E-05 43.2 8.4 41 259-303 108-148 (329)
452 KOG0744 AAA+-type ATPase [Post 86.0 4.2 9E-05 41.2 8.7 113 146-277 177-325 (423)
453 PF03796 DnaB_C: DnaB-like hel 85.9 2.4 5.2E-05 42.3 7.3 141 145-303 18-179 (259)
454 COG3972 Superfamily I DNA and 85.9 2.1 4.5E-05 45.6 6.8 153 120-286 152-319 (660)
455 KOG2004 Mitochondrial ATP-depe 85.9 5.7 0.00012 44.4 10.3 95 131-274 415-518 (906)
456 TIGR03878 thermo_KaiC_2 KaiC d 85.8 1.9 4.1E-05 43.0 6.4 29 145-173 35-63 (259)
457 cd03276 ABC_SMC6_euk Eukaryoti 85.7 6.1 0.00013 37.6 9.7 45 259-303 129-174 (198)
458 COG1122 CbiO ABC-type cobalt t 85.7 3 6.5E-05 40.9 7.6 32 261-292 156-187 (235)
459 PRK13876 conjugal transfer cou 85.6 0.77 1.7E-05 51.9 3.9 49 147-210 145-193 (663)
460 PRK08840 replicative DNA helic 85.4 5.9 0.00013 43.1 10.4 42 128-170 199-240 (464)
461 TIGR03743 SXT_TraD conjugative 85.3 2.2 4.7E-05 48.3 7.3 54 146-212 176-231 (634)
462 TIGR02868 CydC thiol reductant 85.1 1.3 2.9E-05 49.2 5.5 17 145-161 360-376 (529)
463 PRK09354 recA recombinase A; P 85.0 3.2 7E-05 43.0 7.8 44 145-201 59-102 (349)
464 TIGR02533 type_II_gspE general 84.9 1.4 3.1E-05 48.1 5.5 46 123-172 220-267 (486)
465 KOG0732 AAA+-type ATPase conta 84.9 1.8 3.8E-05 50.7 6.3 54 109-163 262-316 (1080)
466 cd00983 recA RecA is a bacter 84.9 2.9 6.3E-05 43.0 7.3 44 145-201 54-97 (325)
467 PRK04537 ATP-dependent RNA hel 84.8 3.7 8E-05 46.1 8.8 73 187-269 257-333 (572)
468 PRK13764 ATPase; Provisional 84.8 1.8 3.8E-05 48.3 6.1 27 145-172 256-282 (602)
469 PHA00012 I assembly protein 84.7 3 6.6E-05 42.4 7.1 26 149-174 4-29 (361)
470 TIGR02767 TraG-Ti Ti-type conj 84.6 0.94 2E-05 50.9 3.9 49 147-210 212-260 (623)
471 KOG0058 Peptide exporter, ABC 84.5 2.8 6.1E-05 46.9 7.4 142 145-302 493-660 (716)
472 TIGR02788 VirB11 P-type DNA tr 84.4 1 2.3E-05 46.2 4.0 20 143-162 141-160 (308)
473 PRK13880 conjugal transfer cou 84.2 0.86 1.9E-05 51.5 3.5 46 147-207 176-221 (636)
474 KOG0737 AAA+-type ATPase [Post 84.1 6.6 0.00014 40.5 9.3 55 109-163 89-144 (386)
475 PHA03372 DNA packaging termina 84.1 9 0.0002 42.3 10.8 128 147-304 203-337 (668)
476 COG0467 RAD55 RecA-superfamily 84.0 1.8 4E-05 43.1 5.5 54 145-212 22-75 (260)
477 PRK13822 conjugal transfer cou 84.0 0.93 2E-05 51.2 3.6 49 147-210 225-273 (641)
478 TIGR02640 gas_vesic_GvpN gas v 84.0 1 2.3E-05 45.0 3.7 26 138-163 13-38 (262)
479 KOG1513 Nuclear helicase MOP-3 83.7 1.9 4.2E-05 48.3 5.6 53 403-455 851-911 (1300)
480 TIGR03346 chaperone_ClpB ATP-d 83.5 12 0.00026 44.2 12.7 19 146-164 194-212 (852)
481 cd00267 ABC_ATPase ABC (ATP-bi 83.4 2.4 5.2E-05 38.5 5.6 41 261-303 98-138 (157)
482 COG1485 Predicted ATPase [Gene 83.3 13 0.00028 38.3 11.0 109 147-307 66-174 (367)
483 TIGR01243 CDC48 AAA family ATP 83.3 7.1 0.00015 45.3 10.6 18 145-162 211-228 (733)
484 cd03221 ABCF_EF-3 ABCF_EF-3 E 83.1 4 8.7E-05 36.6 6.8 31 259-289 86-116 (144)
485 KOG3089 Predicted DEAD-box-con 83.1 1.2 2.5E-05 42.1 3.2 34 236-269 195-228 (271)
486 PF01637 Arch_ATPase: Archaeal 83.0 0.76 1.7E-05 44.5 2.2 57 244-305 105-166 (234)
487 TIGR00602 rad24 checkpoint pro 83.0 4.8 0.0001 45.4 8.6 48 106-164 78-128 (637)
488 KOG0730 AAA+-type ATPase [Post 83.0 4.9 0.00011 44.5 8.4 56 105-163 427-485 (693)
489 PRK08760 replicative DNA helic 82.9 6.6 0.00014 42.9 9.6 113 145-274 228-352 (476)
490 PRK08006 replicative DNA helic 82.9 13 0.00028 40.6 11.7 114 145-274 223-349 (471)
491 PF04665 Pox_A32: Poxvirus A32 82.8 1.7 3.6E-05 42.6 4.4 25 148-173 15-39 (241)
492 TIGR03754 conj_TOL_TraD conjug 82.5 3.9 8.4E-05 45.9 7.6 55 146-213 180-236 (643)
493 COG3267 ExeA Type II secretory 82.5 9 0.00019 37.6 9.1 31 141-172 45-76 (269)
494 KOG0333 U5 snRNP-like RNA heli 82.4 6.2 0.00013 42.4 8.5 70 187-266 517-590 (673)
495 PF13555 AAA_29: P-loop contai 82.2 1.2 2.5E-05 33.6 2.4 17 146-162 23-39 (62)
496 TIGR02639 ClpA ATP-dependent C 82.1 1.9 4.2E-05 49.9 5.3 16 148-163 486-501 (731)
497 COG4185 Uncharacterized protei 82.0 0.67 1.4E-05 41.8 1.2 38 149-203 5-42 (187)
498 TIGR03880 KaiC_arch_3 KaiC dom 82.0 2.6 5.7E-05 40.9 5.6 52 146-211 16-67 (224)
499 COG4608 AppF ABC-type oligopep 82.0 8.1 0.00018 38.3 8.7 41 261-301 127-167 (268)
500 cd01393 recA_like RecA is a b 81.9 4.6 0.0001 39.1 7.3 27 146-172 19-45 (226)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.3e-78 Score=666.83 Aligned_cols=494 Identities=32% Similarity=0.507 Sum_probs=432.9
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|.+|+|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------~~~ 74 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------LKA 74 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----------cCC
Confidence 3469999999999999999999999999999999999999999999999999999999999988653 245
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
+++|||+|||+||.|+++.+..+.... ++.+..++||.++..+...+..+++|||+||++|++++.++.++++++++||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 789999999999999999999887654 7999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
|||||+|++++|.+++..|+..++. .+|+++||||+|..+..+.+.|+ .++..+.+... ......+.+.++.+..
T Consensus 155 lDEAd~ml~~gf~~di~~Il~~lp~--~~q~llfSAT~p~~i~~i~~~~l-~~~~~i~i~~~--~~~~~~i~q~~~~v~~ 229 (629)
T PRK11634 155 LDEADEMLRMGFIEDVETIMAQIPE--GHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSS--VTTRPDISQSYWTVWG 229 (629)
T ss_pred eccHHHHhhcccHHHHHHHHHhCCC--CCeEEEEEccCChhHHHHHHHHc-CCCeEEEccCc--cccCCceEEEEEEech
Confidence 9999999999999999999999987 78999999999999999999998 56666665433 3445677888888888
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
..+...|..++... ...++||||+|+..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 230 ~~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arG 308 (629)
T PRK11634 230 MRKNEALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 (629)
T ss_pred hhHHHHHHHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcC
Confidence 88888888888765 45789999999999999999987 57789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCCHHHHHHHHhHHHH
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAA 501 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~~~~i~~~~~~~~~ 501 (620)
||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+++. ...++.|++.++..++++.+|..+++.........
T Consensus 309 IDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~ 388 (629)
T PRK11634 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFA 388 (629)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 78899999999999999999999999887777776
Q ss_pred HHhhhh-cCCCchHHHHHHHHHHhc---cCCCHHHHHHHHHHHHcCCccc--------------cccc------------
Q 007044 502 ETITQV-SDSVIPAFKSAAEELLNN---SGLSAAELLAKALAKAVGYTEI--------------KSRS------------ 551 (620)
Q Consensus 502 ~~~~~~-~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~~--------------~~~~------------ 551 (620)
..+... .....+.|...+.++++. ...++.+++++++....+.... ..+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (629)
T PRK11634 389 AKVQQQLESSDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 (629)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccccccc
Confidence 666543 345567788888888864 2357787777777666653110 0000
Q ss_pred -----c--cC---CCCCcEEEEEEcCCC-CCCcchHHHHHHhhCCcccccceeeEEEecCCCeEEEEccCCChHHhhccC
Q 007044 552 -----L--LS---SLEDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGT 620 (620)
Q Consensus 552 -----~--~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (620)
. .. ...+++++++++|+. .+.|++++++|++..+..+ ..||+|+|++ +||+||||+++++.++++|
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ig~i~i~~--~~s~v~~~~~~~~~~~~~~ 545 (629)
T PRK11634 469 RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS-RYIGNIKLFA--SHSTIELPKGMPGEVLQHF 545 (629)
T ss_pred ccccccccccccccCCCCEEEEEecccccCCCHHHHHHHHHhhcCCCh-hhCCcEEEeC--CceEEEcChhhHHHHHHHh
Confidence 0 00 122689999999999 8999999999999999875 7999999999 8999999999999998764
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-79 Score=638.31 Aligned_cols=360 Identities=44% Similarity=0.702 Sum_probs=336.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (620)
.|+.++|++.+..+|+..||..|||||.++||.++.|+|+++.|.|||||||+|++|++.++...... ....++|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~----~~~~~~P~ 167 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK----LSRGDGPI 167 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc----ccCCCCCe
Confidence 89999999999999999999999999999999999999999999999999999999999999874221 23467899
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEecc
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDE 269 (620)
+|||+||||||.||..++..++...++++.|+|||.++..|...+.++++|+|+|||||+|+|+.+.++|+.+.|+||||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhh
Q 007044 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (620)
Q Consensus 270 ah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 349 (620)
||+|++|||.+++..|+..++.. ..|+++||||+|.+++.++..|+. ++..+.+..........++.|+...|....+
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~-~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRP-DRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCC-cccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 99999999999999999999653 359999999999999999999996 8888888876667888999999999999999
Q ss_pred hhhHHHHHHhcC--CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccC
Q 007044 350 SQVIPDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (620)
Q Consensus 350 ~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGl 423 (620)
...|..+|..+. .++++||||+|++.|++|+..+. .+..|||+.+|.+|+.+++.|++|++.||||||||+|||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 999999998874 66799999999999999999998 477999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHH
Q 007044 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (620)
Q Consensus 424 Di~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (620)
|||+|++|||||+|.++++|+||+|||||+|+.|.+++|++.. ......+.+
T Consensus 406 Di~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 406 DVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred CCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 444444443
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-78 Score=591.75 Aligned_cols=368 Identities=35% Similarity=0.525 Sum_probs=344.2
Q ss_pred CCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
.....+|.++++.++++++++..||..||+||.++||.++.|+|+|+.|+||||||.||++||+++|...+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--------- 127 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP--------- 127 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---------
Confidence 34456799999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHh-cCCccCCCcc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE-RGNIDLSSLK 263 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~-~~~~~l~~l~ 263 (620)
..+++|||+||||||.||.+.|+.++...|+++.++.||.+...|...+.+.+||+|+|||||++|+. .+.+++..++
T Consensus 128 -~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk 206 (476)
T KOG0330|consen 128 -KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLK 206 (476)
T ss_pred -CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhH
Confidence 34789999999999999999999999999999999999999999999999999999999999999998 5788999999
Q ss_pred EEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe
Q 007044 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (620)
Q Consensus 264 ~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (620)
++|+||||+++++.|.+.+..|+..+|. .+|+++||||||..+..+....+ .++..+... ..+.+..++.|.|+.
T Consensus 207 ~LVlDEADrlLd~dF~~~ld~ILk~ip~--erqt~LfsATMt~kv~kL~rasl-~~p~~v~~s--~ky~tv~~lkQ~ylf 281 (476)
T KOG0330|consen 207 FLVLDEADRLLDMDFEEELDYILKVIPR--ERQTFLFSATMTKKVRKLQRASL-DNPVKVAVS--SKYQTVDHLKQTYLF 281 (476)
T ss_pred HHhhchHHhhhhhhhHHHHHHHHHhcCc--cceEEEEEeecchhhHHHHhhcc-CCCeEEecc--chhcchHHhhhheEe
Confidence 9999999999999999999999999997 88999999999999999987777 466666554 456788899999999
Q ss_pred CCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
++...|...|..+++.. .+..+||||+|...++.++-.|. .+..|||+|+|..|.-.++.|++|.+.||||||++
T Consensus 282 v~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVa 360 (476)
T KOG0330|consen 282 VPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVA 360 (476)
T ss_pred ccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchh
Confidence 99999999999999977 67999999999999999999887 67789999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCC
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~ 488 (620)
+||+|+|.|++|||||+|.+..+||||+|||||+|++|.+|+|++.. ...+.+||..+|.+...+..+.
T Consensus 361 SRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred cccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999999999999999999999999999999999988 8889999999999887766654
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-76 Score=589.59 Aligned_cols=368 Identities=36% Similarity=0.518 Sum_probs=330.9
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
..+|.+++||.++++++..+||..|||||..+||..+.|+|+++||.||||||.||++|+|++|.-.+.+ ...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-------~~~ 252 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-------VAA 252 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-------Ccc
Confidence 3589999999999999999999999999999999999999999999999999999999999999887653 345
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCccEEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRV 266 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~~lV 266 (620)
.||||||||||||.|++..+++++.++++.++...||.+...|...|+.+|||||+|||||+|||.+ ..++++++.++|
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999977 478999999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC-
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS- 345 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~- 345 (620)
+||||+||+.||.+.+..|+..|+. ++|++||||||+..+..++...+ +.|..|.+.+. ..+...+.|-++...
T Consensus 333 lDEADRMLeegFademnEii~lcpk--~RQTmLFSATMteeVkdL~slSL-~kPvrifvd~~--~~~a~~LtQEFiRIR~ 407 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPK--NRQTMLFSATMTEEVKDLASLSL-NKPVRIFVDPN--KDTAPKLTQEFIRIRP 407 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccc--cccceeehhhhHHHHHHHHHhhc-CCCeEEEeCCc--cccchhhhHHHheecc
Confidence 9999999999999999999999998 89999999999999999999998 46666665443 355666777666544
Q ss_pred --chhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 346 --SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 346 --~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
...+...+..++... ...++|||+.|++.|+++.-+|. .+.-+||.|+|.||...++.|++++++||||||+|
T Consensus 408 ~re~dRea~l~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvA 486 (691)
T KOG0338|consen 408 KREGDREAMLASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVA 486 (691)
T ss_pred ccccccHHHHHHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechh
Confidence 334556677777665 46899999999999999988776 78899999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHH---hCCCceeeCCCC
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE---SGVKFEHISAPQ 488 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~---~~~~~~~~~~p~ 488 (620)
+|||||++|..||||++|.+.+.|+||+|||+|+|+.|.+++|+... ...++.|-+. .+.++....+|.
T Consensus 487 sRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~ 559 (691)
T KOG0338|consen 487 SRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPP 559 (691)
T ss_pred hccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCH
Confidence 99999999999999999999999999999999999999999999999 7778888776 555555555544
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-73 Score=617.88 Aligned_cols=372 Identities=38% Similarity=0.625 Sum_probs=340.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
..|++|++++.++++|.+.||..|||||.++||.++.|+|++++|+||||||+||++|+++.+..... ...+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--------~~~~ 100 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--------RKYV 100 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--------cCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999874210 1111
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
.+||++||||||.|+++.+..++.+. ++++.+++||.++..|...+..++||||||||||+||+.++.++++.++++|+
T Consensus 101 ~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 101 SALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 29999999999999999999999988 79999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||||+|+++||.+++..|+..++. ++|+++||||||..+..+++.++. +|..+.+.......+...+.|.++.+...
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~p~--~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKALPP--DRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCCH
Confidence 999999999999999999999998 789999999999999999999995 78888776544445788999999999987
Q ss_pred h-hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
. +...|..++..... .++||||+|+..++.|+..|. .+..|||+|+|.+|.++++.|++|+++||||||+++||
T Consensus 258 ~~k~~~L~~ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 258 EEKLELLLKLLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHHHHHHHHHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 6 99999999998744 589999999999999999887 68899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCce-eeCCCCHHHH
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFE-HISAPQPADI 492 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~-~~~~p~~~~i 492 (620)
||||+|++|||||+|.++++|+||+|||||+|+.|.+++|+.+. ...+..+++.++..+. ...+|..+..
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~~ 409 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPE 409 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchhh
Confidence 99999999999999999999999999999999999999999975 7889999999877766 5555554443
No 6
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-72 Score=565.02 Aligned_cols=373 Identities=34% Similarity=0.482 Sum_probs=345.5
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|+.+.|++..++++.++||..+|++|+.+|+.++.|+|+++.|.||||||+||++|+++.+...+... ..+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~------r~~ 154 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP------RNG 154 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC------CCC
Confidence 45678899999999999999999999999999999999999999999999999999999999998876532 356
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCccEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFR 265 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~~l 265 (620)
..+||+|||||||.|++.+.+.+..+. ++.+..+.||.+.......+..+++|+|+|||||+|||++ +.+-+.+++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 679999999999999999999998887 8999999999999999999988999999999999999987 34567788999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
|+||||+++++||.++++.|+..+|. .+|+++||||+|..|..+++..+..++..+++.......+...+.|.|+.++
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk--~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK--QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc--cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 99999999999999999999999997 7899999999999999999999988999999999888899999999999999
Q ss_pred chhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccc
Q 007044 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~r 421 (620)
...+..++..+++......++||||+|...+..++++|. .+..+||+++|..|..+...|++.+.-|||||||+||
T Consensus 313 ~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 313 SDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred ccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 999989999999887666999999999999999999998 7889999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCCHHH
Q 007044 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPAD 491 (620)
Q Consensus 422 GlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~~~~ 491 (620)
|+|+|+|++||+||+|.+++.||||+|||||.|..|.+++|+.|. ..+++.+. ..++++.+.|....
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~ 460 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKP 460 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCH
Confidence 999999999999999999999999999999999999999999999 67777666 56677777665433
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-72 Score=521.70 Aligned_cols=369 Identities=30% Similarity=0.470 Sum_probs=342.4
Q ss_pred CCCCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccC
Q 007044 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (620)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 182 (620)
........|+++||++.+++.+...||+.|+.+|+.|||+++.|+|+|++|+.|+|||.+|.+.+++.+.-+
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-------- 92 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-------- 92 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------
Confidence 344556789999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 183 ~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
.+..++||++||||||.|+.+.+..++.+.++.+....||.+.....+.+..|.+++.|||||++++++++.+....+
T Consensus 93 --~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~v 170 (400)
T KOG0328|consen 93 --VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAV 170 (400)
T ss_pred --cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccce
Confidence 355789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
+++|+||||.||+.||.+++-.|++.+|+ ..|++++|||+|..+.++..+|+ .+|..+-+...+ .+...++++++
T Consensus 171 kmlVLDEaDemL~kgfk~Qiydiyr~lp~--~~Qvv~~SATlp~eilemt~kfm-tdpvrilvkrde--ltlEgIKqf~v 245 (400)
T KOG0328|consen 171 KMLVLDEADEMLNKGFKEQIYDIYRYLPP--GAQVVLVSATLPHEILEMTEKFM-TDPVRILVKRDE--LTLEGIKQFFV 245 (400)
T ss_pred eEEEeccHHHHHHhhHHHHHHHHHHhCCC--CceEEEEeccCcHHHHHHHHHhc-CCceeEEEecCC--Cchhhhhhhee
Confidence 99999999999999999999999999987 78999999999999999999999 677777655443 56667999999
Q ss_pred eCCchh-hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecc
Q 007044 343 PCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (620)
Q Consensus 343 ~~~~~~-~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd 417 (620)
.+.... |.+.|+++...+ .-.+++|||||++.++.|.+.+. .+..+||+|.|++|+.+++.||+|+.+|||+||
T Consensus 246 ~ve~EewKfdtLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD 324 (400)
T KOG0328|consen 246 AVEKEEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD 324 (400)
T ss_pred eechhhhhHhHHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEec
Confidence 887665 999999999888 45789999999999999999987 677899999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|++|.+|.|+... ...++.|++++...+.+++..
T Consensus 325 VwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred hhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999998 889999999999988877654
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-71 Score=535.91 Aligned_cols=371 Identities=35% Similarity=0.485 Sum_probs=337.7
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|+.+||++|+.+.|+.+|+..|||+|..|||.|+.|+|+|++|.||||||+||.+|+++++...+ .
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP----------~ 74 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP----------Y 74 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC----------C
Confidence 346799999999999999999999999999999999999999999999999999999999999998875 3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC----CccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~----~~~l~~l 262 (620)
+..+||++||||||.|+++.|..+++..++++..++||++.-.|...|.+++||||+||||+.+++... .+.+.++
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhce
Confidence 557999999999999999999999999999999999999999999999999999999999999999864 4568899
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
+++|+||||+|++.+|.++++.++..+|. ++|+++||||+.+.+..+........ ....+.......+...+.+.|+
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~--~RQtLlfSATitd~i~ql~~~~i~k~-~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPK--PRQTLLFSATITDTIKQLFGCPITKS-IAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCC--ccceEEEEeehhhHHHHhhcCCcccc-cceEEeccCCCCchhhhhhhee
Confidence 99999999999999999999999999998 68999999999998877665444221 2222223333467778889999
Q ss_pred eCCchhhhhhHHHHHHhcCC--CCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEec
Q 007044 343 PCSSSARSQVIPDIIRCYSS--GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (620)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT 416 (620)
.++...+...+..++..+.. .+.++||+|+..+|+.|+..|. .+..+||.|+|++|...+.+|+++.++|||||
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 99999999999999998765 7899999999999999999887 67789999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCCHH
Q 007044 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPA 490 (620)
Q Consensus 417 dv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~~~ 490 (620)
|||+||+|||.|++|||||+|+++.+|+||+|||+|+|+.|.+|.|+++. ...+..||...|.++.+++.....
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~ 386 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRT 386 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchh
Confidence 99999999999999999999999999999999999999999999999998 899999999999999988765543
No 9
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-69 Score=539.28 Aligned_cols=408 Identities=30% Similarity=0.462 Sum_probs=342.8
Q ss_pred CccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 109 NAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 109 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
..|++++ |++++++++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+........ ..
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-----~~ 78 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-----PG 78 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-----cc
Confidence 3456554 6699999999999999999999999999999999999999999999999999999965443221 11
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcC-CCceEEEEeCCcchHHHHHHhc-CCCcEEEeChHHHHHHHhcCC--ccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGN--IDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~-~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~--~~l~~l 262 (620)
..-+|||+||||||.||.+.+..|..+ .++++.+++||.+.......+. .+++|+|||||||.+++.+.. +++.++
T Consensus 79 ~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 79 QVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred ceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 356999999999999999999888776 6899999999999888877765 579999999999999998843 456699
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
+++|+||||++++|||...+..|+..+|. .+++=+||||+...+..+.+..+ .++..|.+.......++..+...|+
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPK--QRRTGLFSATq~~~v~dL~raGL-RNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPK--QRRTGLFSATQTQEVEDLARAGL-RNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhccc--ccccccccchhhHHHHHHHHhhc-cCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999998 68999999999999999999999 6888888877665567888899999
Q ss_pred eCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEec
Q 007044 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (620)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT 416 (620)
.|....+...+.+++... ...++|||++|...++.....+. .+..+||.|++..|.+++..|++..-.+|+||
T Consensus 236 v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred EecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 999999999999999886 56899999999999999988876 56789999999999999999999888999999
Q ss_pred ccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCCHHH-HHH
Q 007044 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPAD-IAK 494 (620)
Q Consensus 417 dv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~~~~-i~~ 494 (620)
||+|||||||+|++||+||+|.++.+|+||+|||||+|+.|.+|+|+.|+ ..++..+.-.-...++++..|.... +..
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~~~~ 394 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVYQ 394 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999 5555555443345666666655444 121
Q ss_pred HHhHHHHHHhhhhcCCCchHHHHHHHHHHhcc
Q 007044 495 AAGVEAAETITQVSDSVIPAFKSAAEELLNNS 526 (620)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 526 (620)
... .+.-.-..+.+.-...|...++.+-+++
T Consensus 395 ~ir-~~~~~DR~~~dkG~kAFVS~VraY~~H~ 425 (567)
T KOG0345|consen 395 DIR-SIISKDRAVLDKGLKAFVSHVRAYKKHH 425 (567)
T ss_pred HHH-HHhcccHHHHhhhHHHHHHHHHHHhhcc
Confidence 111 1111111122334466777777776654
No 10
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-71 Score=558.46 Aligned_cols=388 Identities=32% Similarity=0.483 Sum_probs=328.7
Q ss_pred CCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcc-cC
Q 007044 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASK-KT 182 (620)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~-~~ 182 (620)
..+...|..|+++.+++++|..+||..|||||..+||.+..| .|+++.|.|||||||||.+||++.+......... ..
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 345567889999999999999999999999999999999988 8999999999999999999999976654321100 00
Q ss_pred CCCCCC--eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc---
Q 007044 183 GYGRAP--SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--- 257 (620)
Q Consensus 183 ~~~~~~--~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~--- 257 (620)
....+| .+||++||||||.||.+.|..++..+++++..++||.....|.+.+++.++|||+||||||.++..++.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 112344 499999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCccEEEeccchhhhhcCcHHHHHHHHHhccc---cCCceEEeecCCCCh---------------------HHHHHHH
Q 007044 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPS---------------------WVKHIST 313 (620)
Q Consensus 258 ~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~---~~~~q~ll~SATl~~---------------------~~~~~~~ 313 (620)
++.+++++|+||||+|+..|+.+.+..|+..+.. ...+|+++||||++- .+..+.+
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 5778999999999999999999999999998862 235899999999743 2333333
Q ss_pred H-hcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchh
Q 007044 314 K-FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARA 388 (620)
Q Consensus 314 ~-~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~ 388 (620)
. .++..|.+|++.... .+...+....+.|+...+...|..+|..+ .|++|||||+++.+.+|+.+|. ....
T Consensus 417 ~ig~~~kpkiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HhCccCCCeeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 3 234566778776543 55566666677888888888888887766 3899999999999999999998 5668
Q ss_pred hccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-c
Q 007044 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467 (620)
Q Consensus 389 lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~ 467 (620)
||+.|.|.+|.+.+++|++..-.|||||||||||||||+|+|||||.+|++.+-|+||+|||+||+..|++++|++|. .
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred hHHHHHHHHhCCCceeeCCCCHHHHHHHH
Q 007044 468 SSVSKIERESGVKFEHISAPQPADIAKAA 496 (620)
Q Consensus 468 ~~~~~i~~~~~~~~~~~~~p~~~~i~~~~ 496 (620)
..+.++.+.+....+--..|-.+.++...
T Consensus 573 ~~~~KL~ktL~k~~dlpifPv~~~~m~~l 601 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKEDLPIFPVETDIMDAL 601 (731)
T ss_pred HHHHHHHHHHhhccCCCceeccHHHHHHH
Confidence 88888888776654433355566665543
No 11
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-69 Score=546.47 Aligned_cols=371 Identities=30% Similarity=0.449 Sum_probs=341.4
Q ss_pred CCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
...+..|.+|+|+...++.|++.+|..||.+|+.+||..+.|+|+|+.|.||||||+||++|++++|....+..
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------ 138 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------ 138 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC------
Confidence 44566799999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCcc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~ 263 (620)
..|.-||||+||||||.|+++.+.+.+++.+++.+.+.||.........+. +.+|+|||||||+.||.. -.++.+++.
T Consensus 139 ~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQ 217 (758)
T KOG0343|consen 139 TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQ 217 (758)
T ss_pred CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcce
Confidence 456669999999999999999999999999999999999999776655554 599999999999999975 468889999
Q ss_pred EEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe
Q 007044 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (620)
Q Consensus 264 ~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (620)
++||||||+|++|||...+..|+..+|. .+|++|||||-+..+..+++..+ .+|..|.+.......++.+++|.|+.
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~--~RQTLLFSATqt~svkdLaRLsL-~dP~~vsvhe~a~~atP~~L~Q~y~~ 294 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPK--KRQTLLFSATQTKSVKDLARLSL-KDPVYVSVHENAVAATPSNLQQSYVI 294 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCCh--hheeeeeecccchhHHHHHHhhc-CCCcEEEEeccccccChhhhhheEEE
Confidence 9999999999999999999999999998 78999999999999999999988 79999998877778889999999999
Q ss_pred CCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEecc
Q 007044 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd 417 (620)
++...+...|..++..+ ...++|||+.|++++..++..+. .+..|||.|+|..|..++..|...+.-||+|||
T Consensus 295 v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred EehhhHHHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 99999999999999988 56899999999999999998886 567899999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCceeeCCC
Q 007044 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~p 487 (620)
+++||||+|.|++||++|+|.++++||||+|||+|.+..|.|++++.|. ..++..+++. ++++.++.+.
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~ 444 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKID 444 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccC
Confidence 9999999999999999999999999999999999999999999999998 5666777665 4777777654
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.8e-69 Score=542.86 Aligned_cols=362 Identities=35% Similarity=0.556 Sum_probs=330.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
..+|++.+++.++++.+...||..|+|||.++||..++.+|+|+.|.||||||+||++|++..+...+.-. .......+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~-~~en~~~g 322 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA-RLENNIEG 322 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcc-hhhhcccC
Confidence 46788999999999999999999999999999999999999999999999999999999999887765311 11234578
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
|+++|++|||+||+||.++-.+|++.++++++.++||.+...|-..+..+|+|+|+|||+|++.|++..+.++.+.+||+
T Consensus 323 pyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 323 PYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVL 402 (673)
T ss_pred ceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccC---------------------C--ceEEeecCCCChHHHHHHHHhcccCCcEEE
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDAN---------------------K--VQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~---------------------~--~q~ll~SATl~~~~~~~~~~~~~~~~~~i~ 324 (620)
||||+|+||||.+++..|+.++|..+ + +|+++||||||+.+..+++.|| ..|..+.
T Consensus 403 deadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~yl-r~pv~vt 481 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYL-RRPVVVT 481 (673)
T ss_pred cchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHh-hCCeEEE
Confidence 99999999999999999999998532 1 7999999999999999999999 5777776
Q ss_pred EecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHH
Q 007044 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400 (620)
Q Consensus 325 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~ 400 (620)
+.. .......+.|.++....+.+...|..++... ...++|||+|+++.|+.|++.|. .+..|||+-+|.+|+.
T Consensus 482 ig~--~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 482 IGS--AGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred ecc--CCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 543 3466778889999999999999999999887 55899999999999999999998 6778999999999999
Q ss_pred HHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHH
Q 007044 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (620)
Q Consensus 401 ~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~ 474 (620)
++..|++|...||||||+++||||||+|++|||||++.+.++|+||||||||||+.|.+++|+++. ...+..+.
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLk 633 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLK 633 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 44444443
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.9e-68 Score=574.00 Aligned_cols=433 Identities=33% Similarity=0.481 Sum_probs=380.9
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
..+|+.++|++.++++|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|+++++.... ..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----------~~ 72 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----------FR 72 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----------CC
Confidence 35799999999999999999999999999999999999999999999999999999999999986432 34
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
+++||++|||+||.|++++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++||
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLV 152 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEE
Confidence 679999999999999999999887654 7899999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||||+|++++|..++..++..++. .+|+++||||+|+.+..+...++ .++..+.+.... ....+.+.++.+..
T Consensus 153 iDEad~~l~~g~~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~---~~~~i~~~~~~~~~ 226 (460)
T PRK11776 153 LDEADRMLDMGFQDAIDAIIRQAPA--RRQTLLFSATYPEGIAAISQRFQ-RDPVEVKVESTH---DLPAIEQRFYEVSP 226 (460)
T ss_pred EECHHHHhCcCcHHHHHHHHHhCCc--ccEEEEEEecCcHHHHHHHHHhc-CCCEEEEECcCC---CCCCeeEEEEEeCc
Confidence 9999999999999999999999987 68999999999999999999988 566666654322 34558888888888
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
..+...+..++... ...++||||+|+..++.++..|. .+..+||+|++.+|..+++.|++|.++|||||++++||
T Consensus 227 ~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rG 305 (460)
T PRK11776 227 DERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARG 305 (460)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 88889999998766 45789999999999999999987 67789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCCHHHHHHHHhHHHH
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAA 501 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~~~~i~~~~~~~~~ 501 (620)
||+|++++|||||+|.+..+|+||+|||||+|+.|.|++|+.+. ...+..+++..+..+++..+|......
T Consensus 306 iDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~-------- 377 (460)
T PRK11776 306 LDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS-------- 377 (460)
T ss_pred cchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc--------
Confidence 99999999999999999999999999999999999999999998 778889999999888887776432110
Q ss_pred HHhhhhcCCCchHHHHHHHHHHhccCCCHHHHHHHHHHHHcCCcccccccccCCCCCcEEEEEEcCCC-CCCcchHHHHH
Q 007044 502 ETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKP-IYTPSFAFGVL 580 (620)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 580 (620)
. . .....+.++.+..|+. ...++++++++
T Consensus 378 -----------------------~---~------------------------~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 407 (460)
T PRK11776 378 -----------------------G---V------------------------PLLPEMVTLCIDGGKKDKLRPGDILGAL 407 (460)
T ss_pred -----------------------c---c------------------------cCCCCeEEEEEecccccCCCccchHHHh
Confidence 0 0 0113467888888876 56788899999
Q ss_pred HhhCCcccccceeeEEEecCCCeEEEEccCCChHHhhc
Q 007044 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 618 (620)
Q Consensus 581 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
.+..+.. ..++|.|++.+ .+++++++...++.++.
T Consensus 408 ~~~~~~~-~~~~g~~~~~~--~~~~~~~~~~~~~~~~~ 442 (460)
T PRK11776 408 TGDAGLD-GAQIGKINVTD--FHAYVAVERAVAKKALK 442 (460)
T ss_pred hcccCCC-hhhcCCccccc--ccceeecchhhHHHHHH
Confidence 8765554 36899999998 89999999998887764
No 14
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-68 Score=507.60 Aligned_cols=364 Identities=29% Similarity=0.484 Sum_probs=341.6
Q ss_pred CCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
...-+.|++|.|.++++..+.+.||+.|+|+|.++||.++.|+|+++.|..|+|||.||++|+++.+....
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------- 151 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------- 151 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc---------
Confidence 34457899999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
...+++|++||||||.|+...+..+++++++.+...+||++....+..+...++++|+||||++|++.++--.++++.+
T Consensus 152 -~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~ 230 (459)
T KOG0326|consen 152 -NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVI 230 (459)
T ss_pred -cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceE
Confidence 4668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC
Q 007044 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (620)
Q Consensus 265 lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (620)
+|+||||.|++..|...++.++..+|. .+|+++||||+|-.+..+..+++ ..|..|.+... .+...+.|+|-.+
T Consensus 231 lV~DEADKlLs~~F~~~~e~li~~lP~--~rQillySATFP~tVk~Fm~~~l-~kPy~INLM~e---Ltl~GvtQyYafV 304 (459)
T KOG0326|consen 231 LVMDEADKLLSVDFQPIVEKLISFLPK--ERQILLYSATFPLTVKGFMDRHL-KKPYEINLMEE---LTLKGVTQYYAFV 304 (459)
T ss_pred EEechhhhhhchhhhhHHHHHHHhCCc--cceeeEEecccchhHHHHHHHhc-cCcceeehhhh---hhhcchhhheeee
Confidence 999999999999999999999999998 78999999999999999999999 57888877543 5667888999999
Q ss_pred CchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccc
Q 007044 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (620)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~ 420 (620)
....|...|..+...+. -.+.|||||+...++.|+..+. .+..+|+.|.|+.|.+++..|++|.++.|||||.+.
T Consensus 305 ~e~qKvhCLntLfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~T 383 (459)
T KOG0326|consen 305 EERQKVHCLNTLFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFT 383 (459)
T ss_pred chhhhhhhHHHHHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhh
Confidence 99999999999988774 4689999999999999998776 678899999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeC
Q 007044 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (620)
Q Consensus 421 rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~ 485 (620)
||||+++|++|||||+|+++++|+||+||+||.|..|.||.|++.. ...+.+||.++|..++.++
T Consensus 384 RGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 384 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred cccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999998 8889999999999988765
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.5e-66 Score=553.09 Aligned_cols=373 Identities=32% Similarity=0.522 Sum_probs=332.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|++|+|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|+++.+........ ....+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~---~~~~~ 83 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED---RKVNQ 83 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc---cccCC
Confidence 467999999999999999999999999999999999999999999999999999999999999876432110 11346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
+++|||+|||+||.|+++.+..++...++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++||+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 89999999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||||+|++++|..++..++..++....++.++||||++..+..+...++ .++..+.+.... .....+.+.++.+...
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-~~p~~i~v~~~~--~~~~~i~~~~~~~~~~ 240 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-NNPEYVEVEPEQ--KTGHRIKEELFYPSNE 240 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-CCCEEEEEcCCC--cCCCceeEEEEeCCHH
Confidence 9999999999999999999999865567899999999999999888888 466666554332 3445677777767777
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccC
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGl 423 (620)
.+...+..++... ...++||||+++..|+.++..|. .+..+||+|++.+|..+++.|++|+++||||||+++|||
T Consensus 241 ~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 241 EKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 7888888888765 45799999999999999999987 677899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 424 Di~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
|+|+|++|||||+|.+..+|+||+|||||+|+.|.|++|+.+. ...+..+++..+..++....+
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 384 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYD 384 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCC
Confidence 9999999999999999999999999999999999999999998 778899999888877654443
No 16
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-66 Score=508.66 Aligned_cols=349 Identities=36% Similarity=0.602 Sum_probs=318.7
Q ss_pred Cccc-cCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 109 NAVS-RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 109 ~~~~-~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
..|+ .|.-.+++++.+.+.||.+|||||.++||.+|+|+|+++.|+||+|||++|++|-+-++...+... ....+
T Consensus 219 ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~----~qr~~ 294 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR----EQRNG 294 (629)
T ss_pred CcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh----hccCC
Confidence 4554 478889999999999999999999999999999999999999999999999999988877655432 24568
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
|.+|+++|||+||.|+.-+..++. +.++...|+|||.+...|...++++.+|+++|||||.++...+.++|.++.||||
T Consensus 295 p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVl 373 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVL 373 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEe
Confidence 899999999999999998887764 4578999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||||+||+|||..++..|+-.+.. .+|+++.|||+|..+..++..|+ .++..+.+. .........+.|.++.....
T Consensus 374 DEADrMLDMgFEpqIrkilldiRP--DRqtvmTSATWP~~VrrLa~sY~-Kep~~v~vG-sLdL~a~~sVkQ~i~v~~d~ 449 (629)
T KOG0336|consen 374 DEADRMLDMGFEPQIRKILLDIRP--DRQTVMTSATWPEGVRRLAQSYL-KEPMIVYVG-SLDLVAVKSVKQNIIVTTDS 449 (629)
T ss_pred cchhhhhcccccHHHHHHhhhcCC--cceeeeecccCchHHHHHHHHhh-hCceEEEec-ccceeeeeeeeeeEEecccH
Confidence 999999999999999999988876 78999999999999999999999 466655443 33345566788888888899
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccC
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGl 423 (620)
.+...+..++...++..++||||..+..|+.|..-|. ....|||+-.|.+|+..++.|++|.++||||||+++|||
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 9999999999999999999999999999999988776 567899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 424 Di~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|+++++||+|||+|.+.+.|+||+|||||+|+.|.+++|++.+
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~ 572 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRN 572 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehh
Confidence 9999999999999999999999999999999999999999988
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3e-65 Score=559.43 Aligned_cols=363 Identities=33% Similarity=0.580 Sum_probs=323.3
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
.....|+++++++.++++|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|++.++..... ....
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-----~~~~ 201 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-----LRYG 201 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-----ccCC
Confidence 34567899999999999999999999999999999999999999999999999999999999998875422 1124
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
.+|++|||+||||||.|+.+++..++...++++.+++||.+...+...+..+++|+|+||++|++++.++..+++++++|
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 57899999999999999999999999888999999999999999999999999999999999999999988899999999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
||||||+|++++|..++..|+..++. .+|+++||||+|..+..+++.++...+..+.+.... .....++.+.+..+.
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~--~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRP--DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVE 358 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCC--CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEe
Confidence 99999999999999999999999876 689999999999999999999885556655543322 234456777777777
Q ss_pred chhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccc
Q 007044 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~ 420 (620)
...+...|..++.... .+.++||||+++..|+.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~ 438 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVAS 438 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhh
Confidence 7778888888887654 67899999999999999999997 567899999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHH
Q 007044 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (620)
Q Consensus 421 rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (620)
||||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++. ......+.+.
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 5555555444
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-66 Score=526.69 Aligned_cols=356 Identities=38% Similarity=0.606 Sum_probs=322.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
..|..-.+...+...++..||..|||+|+.+||.+..|+|+++||+||||||.||++|++.++................|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 46777778899999999999999999999999999999999999999999999999999999988755433333333579
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
++||++||||||.|++++.+++....++++..+|||.++..+.+.+.+++||+|+|||||.++++++.+.|++++++|||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhh-cCcHHHHHHHHHhccc--cCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 269 EADEMLR-MGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 269 Eah~~l~-~~f~~~l~~il~~~~~--~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
|||+|+| |+|.+++..|+..+.. ...+|+++||||+|..+..++..|+..++..+.+.. ......++.|....+.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~r--vg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGR--VGSTSENITQKILFVN 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEee--eccccccceeEeeeec
Confidence 9999999 9999999999988744 347899999999999999999999865555554433 3467788999999999
Q ss_pred chhhhhhHHHHHHhcC---CCC-----eEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEE
Q 007044 346 SSARSQVIPDIIRCYS---SGG-----RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~~---~~~-----~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vL 413 (620)
...+...|..++.... ..+ .++|||.|++.|..++.+|. .+..+||+.+|.+|.+.++.|++|.+.+|
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 8888888888887553 334 79999999999999999998 67789999999999999999999999999
Q ss_pred EecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 414 vaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|||+|++||||||+|+||||||+|.+..+|+||+|||||+|+.|.++.|++..
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999955
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.9e-64 Score=541.46 Aligned_cols=369 Identities=35% Similarity=0.541 Sum_probs=329.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (620)
+|++|+|+++++++|.+.||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+....... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~----~~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA----KGRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc----ccCCCce
Confidence 588999999999999999999999999999999999999999999999999999999999987643210 1124468
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEecc
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDE 269 (620)
+|||+|||+||.|+.+.+..+....++.+..++||.+...+...+..+++|+|+||++|++++.++.+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999998889999999999999998888888999999999999999998888999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhh
Q 007044 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (620)
Q Consensus 270 ah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 349 (620)
||+|++++|..++..++..++. ..|+++||||++..+..+...++ .++..+.+... ......+.+.+..+....+
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~--~~q~l~~SAT~~~~~~~l~~~~~-~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k 232 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA--KRQNLLFSATFSDDIKALAEKLL-HNPLEIEVARR--NTASEQVTQHVHFVDKKRK 232 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc--cCeEEEEeCCCcHHHHHHHHHHc-CCCeEEEEecc--cccccceeEEEEEcCHHHH
Confidence 9999999999999999999986 68999999999999999988888 45665555432 2344567777777777777
Q ss_pred hhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCC
Q 007044 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (620)
Q Consensus 350 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi 425 (620)
..++..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||++++||||+
T Consensus 233 ~~~l~~l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 233 RELLSQMIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 77777777654 45789999999999999999997 56789999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCC
Q 007044 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (620)
Q Consensus 426 ~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~ 488 (620)
|+|++||||++|.++.+|+||+|||||+|..|.|++|+.+. ...++.+++.++.++++..++.
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~~~ 375 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPG 375 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccccCC
Confidence 99999999999999999999999999999999999999998 7889999999888876665554
No 20
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-64 Score=509.38 Aligned_cols=366 Identities=31% Similarity=0.495 Sum_probs=313.2
Q ss_pred CCCCccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
.....|..+||++.++..|.. ++|..||.+|.++||.+++|+|++|.|+||||||+||++|+++.|.....+.. +
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~----R 208 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ----R 208 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc----c
Confidence 345689999999999999965 69999999999999999999999999999999999999999999988765432 4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCC-ceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l 262 (620)
..|+.+|||+||||||.|+++.+.++.+.+. +--+.+.||.....+...++.|++|+|+|||||+|||.+ ..+.++.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 6789999999999999999999999887643 445778899999999999999999999999999999987 57889999
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhcccc-----------CCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCc--
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA-----------NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE-- 329 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~-----------~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~-- 329 (620)
+||||||||+++++||..++..|+..+... ...|.+++||||...|..++..-+ .++..|.+....
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sL-kDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSL-KDPVYISLDKSHSQ 367 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccc-cCceeeeccchhhh
Confidence 999999999999999999999999888331 137899999999999999999888 577777622110
Q ss_pred ---------------------ccccccceEEEEEeCCchhhhhhHHHHHHhc---CCCCeEEEEEcccccHHHHHHhcc-
Q 007044 330 ---------------------KMKASTNVRHIVLPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP- 384 (620)
Q Consensus 330 ---------------------~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~- 384 (620)
....+..+.|.|..++..-++-.|..+|... ....++|||+.+.+.++.-+.+|.
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 0223344556666777666666565555432 244689999999999998887774
Q ss_pred -------------------------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCC
Q 007044 385 -------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439 (620)
Q Consensus 385 -------------------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s 439 (620)
.+..|||.|+|++|..+++.|...+-.||+||||++||||+|+|++||+||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 3556899999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHH
Q 007044 440 VEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (620)
Q Consensus 440 ~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (620)
+.+|+||+|||+|+|..|.+++|+.|. ..++..+...
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999 5666666654
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-63 Score=547.92 Aligned_cols=369 Identities=35% Similarity=0.559 Sum_probs=325.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
..|++|+|++.++++|.+.||..|||+|.++||.++.|+|+|++||||||||++|++|+++++........ .....+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~---~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD---RKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc---cccCCc
Confidence 35999999999999999999999999999999999999999999999999999999999999875321100 012357
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC-CccCCCccEEEe
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVL 267 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-~~~l~~l~~lVl 267 (620)
++|||+|||+||.|+++.+..++...++++..++||.++..+...+..+++|+|+||++|++++.+. .+.+..+++|||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 8999999999999999999999999999999999999999988888889999999999999999765 577899999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||||+|++++|..++..|+..++....+|+++||||++..+..+...++. .+..+.+... ......+.+.++.+...
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~-~p~~i~v~~~--~~~~~~i~q~~~~~~~~ 242 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN-EPEKLVVETE--TITAARVRQRIYFPADE 242 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhc-CCcEEEeccc--cccccceeEEEEecCHH
Confidence 99999999999999999999998755689999999999999999988884 4444433222 23455677877777777
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccC
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGl 423 (620)
.+...+..++... .+.++||||+|+..++.++..|. .+..+||+|++.+|..+++.|++|+++||||||+++|||
T Consensus 243 ~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 243 EKQTLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 7777777777654 56799999999999999999987 678899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceee
Q 007044 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHI 484 (620)
Q Consensus 424 Di~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~ 484 (620)
|+|+|++|||||+|.+.++|+||+|||||.|+.|.|++|+.+. ...+..+++.++.++...
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999999999999988 777899998888776543
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.2e-63 Score=539.22 Aligned_cols=363 Identities=27% Similarity=0.455 Sum_probs=318.3
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
.+...|+++++++.+++.|.+.||..|||+|.++||.++.|+|+|++||||||||++|++|++.++....... ....
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~---~~~~ 194 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH---PSEQ 194 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc---cccc
Confidence 4456799999999999999999999999999999999999999999999999999999999999886432111 1123
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
.++++|||+|||+||.|+.+.+..++...++++..++||.....+...+..+++|+|+|||+|.+++.++.+.++++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 67899999999999999999999999888899999999999998888888999999999999999999988899999999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
|+||||+|+++||..++..++..++ .+|+++||||+|..+..++..++ .++..+.+... ......+.+.++.+.
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~---~~q~l~~SATl~~~v~~l~~~~~-~~~~~i~~~~~--~~~~~~v~q~~~~~~ 348 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS---QPQVLLFSATVSPEVEKFASSLA-KDIILISIGNP--NRPNKAVKQLAIWVE 348 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC---CCcEEEEEeeCCHHHHHHHHHhC-CCCEEEEeCCC--CCCCcceeEEEEecc
Confidence 9999999999999999999998885 47999999999999999988887 45666655332 234556777777777
Q ss_pred chhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
...+...+..++.... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl 428 (518)
T PLN00206 349 TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVL 428 (518)
T ss_pred chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHh
Confidence 7777777777776542 34689999999999999998885 46679999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHh
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~ 477 (620)
+||||+|+|++|||||+|.+..+|+||+|||||+|..|.+++|+++. ...+..+.+.+
T Consensus 429 ~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 429 GRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred hccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988 55555555543
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-64 Score=493.85 Aligned_cols=360 Identities=27% Similarity=0.439 Sum_probs=324.5
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
..|++|+|++.+++++.+.||..||-||..+||.+++|+|+++.|.||||||+||++|+++.+....... ....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~----~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN----DGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----cccccc
Confidence 5799999999999999999999999999999999999999999999999999999999999998765432 346789
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCC--CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC-ccCCCccEE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAV--GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFR 265 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~--~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~-~~l~~l~~l 265 (620)
.++||+||||||.|++..+.++...+ .+++.-+...++.......+...++|||+||++++.++..+. ..+..++++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 99999999999999999999877655 366666776777777778888899999999999999999887 678899999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
|+||||.|+..||.+++..+...+|. ..|.++||||+...+..+.+.++ .+|.++.+...+. .....+.|+++.|.
T Consensus 175 VvDEADLllsfGYeedlk~l~~~LPr--~~Q~~LmSATl~dDv~~LKkL~l-~nPviLkl~e~el-~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHLPR--IYQCFLMSATLSDDVQALKKLFL-HNPVILKLTEGEL-PNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhCCc--hhhheeehhhhhhHHHHHHHHhc-cCCeEEEeccccC-CCcccceEEEEEec
Confidence 99999999999999999999999997 78999999999999999999999 6888888877654 46788999999999
Q ss_pred chhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccc---
Q 007044 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV--- 418 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv--- 418 (620)
..++..++..+++..--.|++|||+||.+.|.+|.-.|. ...+|+|.|+...|..+++.|..|-++++||||.
T Consensus 251 e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 999999999998876667999999999999999998887 5678999999999999999999999999999992
Q ss_pred --------------------------------ccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 419 --------------------------------AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 419 --------------------------------~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
.+||||+..|..|||||+|.++.+||||+|||+|+|++|.+++|+.|.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 469999999999999999999999999999999999999999999999
Q ss_pred -chHHHHHHHH
Q 007044 467 -KSSVSKIERE 476 (620)
Q Consensus 467 -~~~~~~i~~~ 476 (620)
......++..
T Consensus 411 e~~g~~~le~~ 421 (569)
T KOG0346|consen 411 EEFGKESLESI 421 (569)
T ss_pred HHhhhhHHHHH
Confidence 4433444433
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.1e-62 Score=525.31 Aligned_cols=362 Identities=34% Similarity=0.531 Sum_probs=321.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (620)
.|++|++++.++++|.+.||..|+++|.++||.++.|+|++++||||||||++|++|+++.+...... ....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~------~~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR------KSGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc------CCCCce
Confidence 58999999999999999999999999999999999999999999999999999999999998754221 124578
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEecc
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDE 269 (620)
+||++||++||.|+++.+..++...++++..++||..+..+...+..+++|+|+||++|++++.++.+.+.++++||+||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh-HHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc-h
Q 007044 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-S 347 (620)
Q Consensus 270 ah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~ 347 (620)
||+|++++|...+..+...++. ..|+++||||++. .+..+...++ .++..+..... .....++.++++.+.. .
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~ 230 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW--RKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPS--RRERKKIHQWYYRADDLE 230 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc--ccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCC--cccccCceEEEEEeCCHH
Confidence 9999999999999999998876 6799999999985 5777777776 46666655432 2344567777776653 5
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccC
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGl 423 (620)
.+...+..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.++|||||+++++||
T Consensus 231 ~k~~~l~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 231 HKTALLCHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGI 309 (434)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCc
Confidence 6777788887653 45899999999999999999997 577899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCcee
Q 007044 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEH 483 (620)
Q Consensus 424 Di~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~ 483 (620)
|+|+|++|||||+|.+...|+||+|||||+|..|.+++|++.. ...+..+++.+...+..
T Consensus 310 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 310 DIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred cCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999988 77788888877765543
No 25
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-64 Score=491.92 Aligned_cols=351 Identities=35% Similarity=0.557 Sum_probs=303.0
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
.+..+|.++.++..+++.|++.|+..|||||.+.+|.+++|+|+|+.|-||||||++|.+|++.......... ....+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l--Pf~~~ 244 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML--PFARG 244 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC--ccccC
Confidence 3346888999999999999999999999999999999999999999999999999999999987765543211 12346
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcC------CCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccC
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGA------VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~------~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l 259 (620)
.+|..||+||+||||.|.++.+..+... ..++.....||.+...|....+++.+|+|+|||||.|+|.++.++|
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 7899999999999999999887765432 3478888899999999999999999999999999999999999999
Q ss_pred CCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEE
Q 007044 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 339 (620)
.-++|+++||||+|+++||.+++..|+.++.. .+|+++||||||..+..+++.-+ -.|..+++.. ....+.++-|
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~--QRQTLLFSATMP~KIQ~FAkSAL-VKPvtvNVGR--AGAAsldViQ 399 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--QRQTLLFSATMPKKIQNFAKSAL-VKPVTVNVGR--AGAASLDVIQ 399 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhh--hhheeeeeccccHHHHHHHHhhc-ccceEEeccc--ccccchhHHH
Confidence 99999999999999999999999999999987 68999999999999999999888 4666666533 2233333333
Q ss_pred EEEeCCchhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEE
Q 007044 340 IVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (620)
Q Consensus 340 ~~~~~~~~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLv 414 (620)
-+-.+.... .+..++.++. ...++||||..+.+++.++++|- .+..+||+-+|++|...++.|+.|+-+|||
T Consensus 400 evEyVkqEa---KiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 400 EVEYVKQEA---KIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLV 476 (610)
T ss_pred HHHHHHhhh---hhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEE
Confidence 222222233 3444555443 44789999999999999999886 677899999999999999999999999999
Q ss_pred ecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 415 aTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
||||++.|+|+|++.||||||+|...+.|+||+|||||.|+.|.+.+|++..
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999999999999999999999999999999999999999887
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-62 Score=489.58 Aligned_cols=351 Identities=34% Similarity=0.556 Sum_probs=320.1
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
.+...|..|+++..|..++.+.-|.+|||+|.+++|..+.|+|++..|.||||||.||+.|++.++...+. ..++
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e-----L~~g 294 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-----LKPG 294 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-----hcCC
Confidence 34467889999999999999999999999999999999999999999999999999999999999987654 3357
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
.+|..||+|||||||.||+.++++|++..|++++++|||.+...|...|..++.|||||||||++++.-+..++.++.||
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
||||||+|.++||..++..|..++.. ++|+|+||||++..+..+++.+| .++..+.. .+.......|.|.+..|+
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirp--drQtllFsaTf~~kIe~lard~L-~dpVrvVq--g~vgean~dITQ~V~V~~ 449 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRP--DRQTLLFSATFKKKIEKLARDIL-SDPVRVVQ--GEVGEANEDITQTVSVCP 449 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCC--cceEEEeeccchHHHHHHHHHHh-cCCeeEEE--eehhccccchhheeeecc
Confidence 99999999999999999999999987 78999999999999999999999 45554433 244456677888877776
Q ss_pred ch-hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccc
Q 007044 346 SS-ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (620)
Q Consensus 346 ~~-~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~ 420 (620)
+. .|...|..-|......+++|||+.-+..++.++..|. .+..+||+|.|.+|.+++..|+.+...|||+||+++
T Consensus 450 s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa 529 (731)
T KOG0339|consen 450 SEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA 529 (731)
T ss_pred CcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh
Confidence 54 4455444444444467899999999999999999987 788999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 421 rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
||+||+.+..|||||+-++.+.|.||+|||||+|..|+++++++++
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeK 575 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEK 575 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechh
Confidence 9999999999999999999999999999999999999999999988
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-60 Score=518.66 Aligned_cols=376 Identities=33% Similarity=0.536 Sum_probs=329.3
Q ss_pred CCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
......|.+++|++.++++|.+.||..|||+|.++|+.+++|+|+|+++|||||||++|++|+++.+....... ...
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~---~~~ 159 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK---ERY 159 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc---ccc
Confidence 34456799999999999999999999999999999999999999999999999999999999999987653211 111
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
...+++|||+||++||.|+++.+..+....++.+..++||.+...+...+. ..++|+|+||++|++++.++...+++++
T Consensus 160 ~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 160 MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred cCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 235789999999999999999999999888999999999999888877765 4689999999999999998888899999
Q ss_pred EEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe
Q 007044 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (620)
Q Consensus 264 ~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (620)
+|||||||++++++|...+..++..++....+|+++||||++..+..++..++ .++..+.+... .....++.+.++.
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~~~~~~~~~~ 316 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT-TDPAIVEIEPE--NVASDTVEQHVYA 316 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc-cCCEEEEeccC--cCCCCcccEEEEE
Confidence 99999999999999999999999998765567999999999999999998888 45666655433 2344556666777
Q ss_pred CCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
+....+...+..++... ...++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 317 ~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l 395 (475)
T PRK01297 317 VAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVA 395 (475)
T ss_pred ecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 77777888888887754 45799999999999999999886 56789999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCC
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~ 488 (620)
++|||+|++++||+||+|.+..+|+||+||+||.|+.|.+++|++.. ..++..+++.++.++. ..+|.
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~-~~~~~ 464 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS-CEMPP 464 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc-ccCCc
Confidence 99999999999999999999999999999999999999999999988 7778999999988764 33344
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-62 Score=472.71 Aligned_cols=369 Identities=31% Similarity=0.478 Sum_probs=327.5
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
...+|++++|+|++++.|..++|..|+.||..++|.++.. +++|.+++.|||||.||.|.++.++...
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---------- 157 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---------- 157 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----------
Confidence 3468999999999999999999999999999999999965 8999999999999999999999988765
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCcc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~ 263 (620)
...|++++|+||||||.|+.+.+...+++.+++......|... .+.-.-..+|+|+|||.+.|++.+ ..+.+..++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~---~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA---KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc---ccCCcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 4678899999999999999999999999988888777766521 111111368999999999999988 788999999
Q ss_pred EEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 264 ~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
++|+||||.|++ .||.++-..|...+|. +.|.++||||+...+..++.+++ .++..+.+...+ ....++.|+|+
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~--~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~ee--l~L~~IkQlyv 309 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPR--NQQLLLFSATFVEKVAAFALKIV-PNANVIILKREE--LALDNIKQLYV 309 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCC--cceEEeeechhHHHHHHHHHHhc-CCCceeeeehhh--ccccchhhhee
Confidence 999999999997 5799999999999986 78999999999999999999999 677777776544 56778999999
Q ss_pred eCCc-hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecc
Q 007044 343 PCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (620)
Q Consensus 343 ~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd 417 (620)
.|.. ..|..+|..+.... .-++.||||.|+..|..|+..|. .+..+||+|.-.+|..++++|+.|..+|||+|+
T Consensus 310 ~C~~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn 388 (477)
T KOG0332|consen 310 LCACRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN 388 (477)
T ss_pred eccchhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEec
Confidence 9875 56788888876655 55899999999999999999987 788999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEcCCCC------CHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCceeeCCCCH
Q 007044 418 VAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQP 489 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~------s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~p~~ 489 (620)
|+|||||++.|++|||||+|. ++++|+||+|||||.|+.|.+|.|++.. ...+..|+++.+.++.++...+.
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~ 468 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDL 468 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccH
Confidence 999999999999999999995 7999999999999999999999999988 56678999999999999888777
Q ss_pred HHHHH
Q 007044 490 ADIAK 494 (620)
Q Consensus 490 ~~i~~ 494 (620)
+++.+
T Consensus 469 ~E~ek 473 (477)
T KOG0332|consen 469 DELEK 473 (477)
T ss_pred HHHHH
Confidence 66654
No 29
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-60 Score=477.38 Aligned_cols=360 Identities=30% Similarity=0.494 Sum_probs=309.4
Q ss_pred CccccCCCCHHHH----------HHHHHCCCCCCcHHHHHHHHHHHc---------CCcEEEECCCCChhhHHhHHHHHH
Q 007044 109 NAVSRFRISVPLR----------EKLKSKGIESLFPIQAMTFDMVLD---------GSDLVGRARTGQGKTLAFVLPILE 169 (620)
Q Consensus 109 ~~~~~~~l~~~l~----------~~l~~~g~~~~~~~Q~~~i~~il~---------g~dvi~~a~TGsGKTla~~lpil~ 169 (620)
..|+.++++.... ++|.++++...+|+|..++|.++. .+|++|.||||||||++|.+||++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 4566677666544 448999999999999999999862 589999999999999999999999
Q ss_pred HHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcC-----CCcEEEeC
Q 007044 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK-----GIDVVIGT 244 (620)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~-----~~~IlV~T 244 (620)
.+...+. +..|||||+|||+|+.||++.|..++...|+.|+.+.|..+...+..++.. ..||+|+|
T Consensus 207 ~L~~R~v---------~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 207 LLSSRPV---------KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHccCCc---------cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 9987653 346899999999999999999999999999999999999999888888764 24999999
Q ss_pred hHHHHHHHhc-CCccCCCccEEEeccchhhhhcCcHHHHHHHHHhcccc-------------------------------
Q 007044 245 PGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA------------------------------- 292 (620)
Q Consensus 245 p~rl~~~l~~-~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~------------------------------- 292 (620)
||||+|||.+ ..++|.+++|+|+||||+|++..|.+++..++..+...
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 9999999984 68999999999999999999999998888877665432
Q ss_pred -CCceEEeecCCCChHHHHHHHHhcccCCcEEEEec--CcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEE
Q 007044 293 -NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG--NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIF 369 (620)
Q Consensus 293 -~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF 369 (620)
++.+.++||||+......+...-+ ..|....+.. ......+..+.+.++.+....+...+..++... ...++|+|
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l-~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf 435 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTL-HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCF 435 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhc-CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEE
Confidence 134688999999887777776666 3454444332 234566677888888888888888899999877 56899999
Q ss_pred EcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHH
Q 007044 370 TETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441 (620)
Q Consensus 370 ~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~ 441 (620)
+++...+.+++..|. .+..+.|.++.+.|.+.+++|..|.+++|||||+++||||+.+|+.|||||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999886 566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCC
Q 007044 442 AYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479 (620)
Q Consensus 442 ~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~ 479 (620)
+|+||+|||||||+.|.||++.+.. .+.+.++.+..+.
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999999988 7777777776553
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-60 Score=466.53 Aligned_cols=362 Identities=30% Similarity=0.511 Sum_probs=335.6
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
..+|++++|++.|++.+...||++|+.||+.||.++..|.|+++++++|||||.+|++++++.+.... ..
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----------ke 94 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV----------KE 94 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch----------HH
Confidence 34899999999999999999999999999999999999999999999999999999999999986543 44
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
.+||+++|||+||.|+......++...++++..+.||.++..+...+. ..++|+|+||||+.+++.++.+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 579999999999999999999999999999999999999987766665 4699999999999999999988889999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||||+|+..||.+++..|+..+|. +.|+++||||+|.|+..+.+.|+ .++..+.+...+ .+...++|+++....
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~lp~--~vQv~l~SAT~p~~vl~vt~~f~-~~pv~i~vkk~~--ltl~gikq~~i~v~k 249 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQELPS--DVQVVLLSATMPSDVLEVTKKFM-REPVRILVKKDE--LTLEGIKQFYINVEK 249 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHcCc--chhheeecccCcHHHHHHHHHhc-cCceEEEecchh--hhhhheeeeeeeccc
Confidence 9999999999999999999999998 78999999999999999999999 578887765544 567789999999888
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
..|...|+++.+ .-...+|||||++.+..+...|. .+.++||+|.+.+|..++..|+.|..+|||.|+.++||
T Consensus 250 ~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~arg 326 (397)
T KOG0327|consen 250 EEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARG 326 (397)
T ss_pred cccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccc
Confidence 889999999998 33689999999999999999997 67789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
+|+..++.||||++|...++|+||+||+||.|++|.++.|+... ...++.+++.++..+++++..
T Consensus 327 idv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 327 IDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred cchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999999999999999999999998 899999999999999987653
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-59 Score=510.57 Aligned_cols=369 Identities=34% Similarity=0.565 Sum_probs=331.1
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
+..+|.+.|++..++..|+++||..|+|||.+|||+|+.|+|||++|.||||||++|+||++.++...+. ...+.
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~-----~~~gd 437 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP-----LEEGD 437 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC-----hhhCC
Confidence 3467889999999999999999999999999999999999999999999999999999999977665543 23467
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc---cCCCcc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI---DLSSLK 263 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~---~l~~l~ 263 (620)
+|-+||++|||+||.|++++++.|.+.++++++++|||.....|+..+++++.|+||||||++|++-.... ++..+.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999865443 455556
Q ss_pred EEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe
Q 007044 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (620)
Q Consensus 264 ~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (620)
++|+||||+|+++||.+++..|+..++. .+|+++||||+|..+..++...++ .|..+.+. ........+.+.+..
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrp--drQtvlfSatfpr~m~~la~~vl~-~Pveiiv~--~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRP--DRQTVLFSATFPRSMEALARKVLK-KPVEIIVG--GRSVVCKEVTQVVRV 592 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcch--hhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEc--cceeEeccceEEEEE
Confidence 9999999999999999999999999976 789999999999999999999996 55554433 345677788888888
Q ss_pred CC-chhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccc
Q 007044 344 CS-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (620)
Q Consensus 344 ~~-~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv 418 (620)
|. ...+...|..+|..+...+++||||..+..|..+...|. .+..|||+.+|..|..+++.|++|.+.+||||++
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 88 888999999999888788999999999999999999887 4556999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 419 ~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
++||||++.+.+|||||+|..++.|+||+|||||+|++|.|++|++|. ..+.-.|.+.+ .......|
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al--~~~~~~~P 740 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL--ELSKQPVP 740 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH--HhccCCCc
Confidence 999999999999999999999999999999999999999999999997 67777777776 34444555
No 32
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.4e-58 Score=489.71 Aligned_cols=364 Identities=32% Similarity=0.524 Sum_probs=320.0
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|++++||||||||++|++|+++.+... ..+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----------~~~ 96 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----------LNA 96 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----------CCC
Confidence 4679999999999999999999999999999999999999999999999999999999999887542 134
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
+++|||+||++||.|+.+.+..++...++.+...+|+.....+...+..+++|+|+||++|.+++.++.+.++++++||+
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 57999999999999999999999888888899999999888888888888999999999999999988888999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc-
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS- 346 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~- 346 (620)
||||++++.+|...+..++..++. ..|++++|||+|+.+..+...++. .+..+.+.... .....+.+.+..+..
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLPP--DVQVALFSATMPNEILELTTKFMR-DPKRILVKKDE--LTLEGIRQFYVAVEKE 251 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCCC--CcEEEEEEecCCHHHHHHHHHHcC-CCEEEEeCCCC--cccCCceEEEEecChH
Confidence 999999999999999999988876 789999999999999888888883 45544433222 234456666665554
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
..+...+..++... ...++||||+|+..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 252 ~~~~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 252 EWKFDTLCDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 33555666666654 45789999999999999999887 57789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++. ...+..+++..+..+++....
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999999999999999999999999 888999999998887765543
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-58 Score=455.66 Aligned_cols=364 Identities=31% Similarity=0.436 Sum_probs=337.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|..+||+..+.+++.+.||..|||+|+++||.+++++|++..|.||||||.||++|+++++.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 46799999999999999999999999999999999999999999999999999999999999998764 356
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
.|+||++|||+||.|+.+.++.++.++++++.+++||.+...|...+..++|||++|||+++.+.-.-.+.|+.+.|||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 78999999999999999999999999999999999999999999999999999999999998887766789999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||||++..|||.+++..++..++. .+|+++||||+|..+..+++.-+ .+|..+.+.... ..+..++..+..+...
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~--~~QTllfSatlp~~lv~fakaGl-~~p~lVRldvet--kise~lk~~f~~~~~a 245 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPE--SRQTLLFSATLPRDLVDFAKAGL-VPPVLVRLDVET--KISELLKVRFFRVRKA 245 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCC--cceEEEEeccCchhhHHHHHccC-CCCceEEeehhh--hcchhhhhheeeeccH
Confidence 999999999999999999999998 67999999999999999999888 688888865543 5667778888888999
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccC
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGl 423 (620)
.+...|..++.......+++|||.|+..++.+...|. .+..++|.|++..|...+..|+.++..+||.||+++||+
T Consensus 246 ~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 246 EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 9999999999877666789999999999999999998 566789999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeC
Q 007044 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (620)
Q Consensus 424 Di~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~ 485 (620)
|||..+.|||||+|.+...|+||+||++|+|+.|.+|.|+.+. ..++..+.-.+|..+.-..
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 9999999999999999999999999999999999999999999 8899999988887666443
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-54 Score=487.21 Aligned_cols=365 Identities=19% Similarity=0.266 Sum_probs=285.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEc
Q 007044 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (620)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (620)
.+++.+.++|.+.||..|||+|.++||.+++|+|+++++|||||||+||++|+++.+... .++++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----------~~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----------PRATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----------CCcEEEEEc
Confidence 389999999999999999999999999999999999999999999999999999999753 246799999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC----CccCCCccEEEeccc
Q 007044 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSLKFRVLDEA 270 (620)
Q Consensus 195 PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~----~~~l~~l~~lVlDEa 270 (620)
|||+||.|+...+..++ ..++++..+.|+.+. .+...+..+++|+|+||++|...+... ...++++++||+|||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999987 457888777777764 455666778999999999997544321 123789999999999
Q ss_pred hhhhhcCcHHHHHHHHHhccc-----cCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 271 DEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 271 h~~l~~~f~~~l~~il~~~~~-----~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
|.|.+ .|..++..++..+.. ..++|+++||||+++... ++..++. .+..+ +.... .........++...
T Consensus 167 h~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g-~~~~~-i~~~~--~~~~~~~~~~~~p~ 240 (742)
T TIGR03817 167 HSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIG-APVVA-VTEDG--SPRGARTVALWEPP 240 (742)
T ss_pred hhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcC-CCeEE-ECCCC--CCcCceEEEEecCC
Confidence 99975 477777776665532 125799999999999865 4566663 33222 22211 11112222222111
Q ss_pred ----------------chhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------------cchhhccccchHH
Q 007044 346 ----------------SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQ 397 (620)
Q Consensus 346 ----------------~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------------~~~~lh~~l~~~~ 397 (620)
...+...+..++. .+.++||||+|++.++.++..+. .+..+||++++.+
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 241 LTELTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ccccccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 1123344555554 45799999999999999998754 3568999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC---chHHHHHH
Q 007044 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIE 474 (620)
Q Consensus 398 R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~---~~~~~~i~ 474 (620)
|..++++|++|++++|||||++++||||+++++|||||+|.+..+|+||+|||||.|+.|.+++++... ...+..++
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998743 45567778
Q ss_pred HHhCCCceee-CCCCHHHHHHHHhHHHH
Q 007044 475 RESGVKFEHI-SAPQPADIAKAAGVEAA 501 (620)
Q Consensus 475 ~~~~~~~~~~-~~p~~~~i~~~~~~~~~ 501 (620)
+.++..++.. ..|....+......-.+
T Consensus 398 ~~~~~~~e~~~~~~~n~~il~~hl~~aa 425 (742)
T TIGR03817 398 ALFDRPVEATVFDPDNPYVLGPHLCCAA 425 (742)
T ss_pred HHhcCCCccceeCCCcHHHHHHHHHHHH
Confidence 7888777764 33666666654444433
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.9e-56 Score=455.55 Aligned_cols=352 Identities=26% Similarity=0.457 Sum_probs=315.0
Q ss_pred CCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
...+..|+++-|..+++..|+..||..||++|..|||.++.+-|+|++|..|+|||++|.+.+++.+...
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---------- 90 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---------- 90 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc----------
Confidence 4456779999999999999999999999999999999999999999999999999999999999888764
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcC-CCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
...++++||+||||+|.||.+.+..++.. .|+++..+.||+........++. ++|+||||||+..+++.+.++.++++
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCcccee
Confidence 35678999999999999999999998874 68999999999998777666654 88999999999999999999999999
Q ss_pred EEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 264 ~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
++||||||.+++ ..|.+++..|+..+|. .+|++.||||.|..+..+..+|| .++..|.+.... .....++|+++
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~--~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~d--~~L~GikQyv~ 244 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQ--IRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNADD--VQLFGIKQYVV 244 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcch--hheeeEEeccCchhHHHHHHHHh-cccceeecccCC--ceeechhheee
Confidence 999999999998 5699999999999998 78999999999999999999999 688888775543 44567778776
Q ss_pred eCCch--------hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCc
Q 007044 343 PCSSS--------ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (620)
Q Consensus 343 ~~~~~--------~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~ 410 (620)
..... .+...|..++... +-.++||||+....|+-++.+|. .+..+.|.|+|.+|..+++.++.-.+
T Consensus 245 ~~~s~nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 245 AKCSPNNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 54432 3566777777776 45789999999999999999998 67789999999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-c-hHHHHH
Q 007044 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K-SSVSKI 473 (620)
Q Consensus 411 ~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~-~~~~~i 473 (620)
+|||+||..+||||-++|++|||.|+|.+.++|.||||||||.|..|.+++|+... . ..+..+
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999877 3 444444
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-54 Score=444.59 Aligned_cols=353 Identities=32% Similarity=0.473 Sum_probs=299.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 007044 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (620)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (620)
+..++.+++.+...||..|+|+|.+++|.++.++|++.|||||||||++|.+|++++|..... .....+.+++|+
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-----~~~~~gl~a~Il 215 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-----EKHKVGLRALIL 215 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-----ccCccceEEEEe
Confidence 567899999999999999999999999999999999999999999999999999999987643 122467899999
Q ss_pred cccHHHHHHHHHHHHHhh--cCCCceEEEEeCCcchH-HHHHHhcCCCcEEEeChHHHHHHHhcCC--ccCCCccEEEec
Q 007044 194 LPTRELAKQVHEDFDVYG--GAVGLTSCCLYGGAPYH-AQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLD 268 (620)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~--~~~~~~v~~~~gg~~~~-~~~~~l~~~~~IlV~Tp~rl~~~l~~~~--~~l~~l~~lVlD 268 (620)
.|||+||.|++.++..+. ...++++..+....... .+.......++|+|+||-++..++..+. ++++++.++|+|
T Consensus 216 ~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 216 SPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVD 295 (593)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeec
Confidence 999999999999999998 56666655544432211 1122223458999999999999998875 789999999999
Q ss_pred cchhhhhc-CcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC-Cc
Q 007044 269 EADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-SS 346 (620)
Q Consensus 269 Eah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~ 346 (620)
|||++++. +|..++..|+..+.. +...+-+||||++..+++++...+ .+...+.+.. .+.....+.|-.+.| +.
T Consensus 296 EaD~lfe~~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~~i~-~~~~~vivg~--~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 296 EADLLFEPEFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAELIK-SDLKRVIVGL--RNSANETVDQELVFCGSE 371 (593)
T ss_pred hHHhhhChhhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHHHhh-ccceeEEEec--chhHhhhhhhhheeeecc
Confidence 99999999 999999999999976 467888999999999999999888 4555554432 334456666655555 45
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcCCceEEEecccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~r 421 (620)
..+..++..++... -..++|||+.+.+.|.+|...|. .+.++||..++.+|+.++++||.|+++|||||++++|
T Consensus 372 ~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~R 450 (593)
T KOG0344|consen 372 KGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLAR 450 (593)
T ss_pred hhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhc
Confidence 56777788888765 55899999999999999999993 7889999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHH
Q 007044 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (620)
Q Consensus 422 GlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (620)
|||+.+|++|||||+|.+..+|+||+||+||+|+.|.||+||+.. ..+++.+..-
T Consensus 451 GiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 451 GIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred cccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHH
Confidence 999999999999999999999999999999999999999999988 6666665543
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.8e-50 Score=446.23 Aligned_cols=338 Identities=22% Similarity=0.261 Sum_probs=260.4
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeE
Q 007044 112 SRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (620)
Q Consensus 112 ~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (620)
..|+++..+...++. .|+..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..+
T Consensus 440 ~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--~--------------GiT 503 (1195)
T PLN03137 440 RNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--P--------------GIT 503 (1195)
T ss_pred cCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--C--------------CcE
Confidence 368888888877765 59999999999999999999999999999999999999999852 1 138
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc------CCCcEEEeChHHHHH--HHhcC---CccC
Q 007044 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK------KGIDVVIGTPGRIKD--HIERG---NIDL 259 (620)
Q Consensus 191 Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~Tp~rl~~--~l~~~---~~~l 259 (620)
|||+|+++|+.++...+.. .++....+.++.....+...+. ..++|||+||++|.. .+.+. ....
T Consensus 504 LVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~ 579 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSR 579 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhc
Confidence 9999999999855554443 4688899999998777654443 468999999999853 22211 1123
Q ss_pred CCccEEEeccchhhhhcC--cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccce
Q 007044 260 SSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~--f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 337 (620)
..+.+|||||||++++|| |++++..+-......+..++++||||++..+.......+......+ +... ....++
T Consensus 580 ~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v-fr~S---f~RpNL 655 (1195)
T PLN03137 580 GLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV-FRQS---FNRPNL 655 (1195)
T ss_pred cccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE-eecc---cCccce
Confidence 458899999999999998 8887766422111122578999999999988876665553322222 2111 122344
Q ss_pred EEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEE
Q 007044 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (620)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vL 413 (620)
...+.. ........+..++.....+..+||||+|+..++.++..|. .+..+||+|++.+|..+++.|+.|+++||
T Consensus 656 ~y~Vv~-k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 656 WYSVVP-KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred EEEEec-cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 333222 1222233455555544345789999999999999999987 67889999999999999999999999999
Q ss_pred EecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHH
Q 007044 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (620)
Q Consensus 414 vaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~ 474 (620)
|||+++++|||+|+|++||||++|.+.+.|+||+|||||.|..|.|++||++. ...++.+.
T Consensus 735 VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 735 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887 44444444
No 38
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-51 Score=377.17 Aligned_cols=336 Identities=26% Similarity=0.429 Sum_probs=295.5
Q ss_pred cCCCCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCccc
Q 007044 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181 (620)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 181 (620)
.+.+.+...|.+|-|.|++++++-+.||+.|+.+|.++||...-|-|++.+|..|.|||.+|.+.-++.+....
T Consensus 35 syv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~------ 108 (387)
T KOG0329|consen 35 SYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD------ 108 (387)
T ss_pred cEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC------
Confidence 34566778899999999999999999999999999999999999999999999999999999999999987753
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCC
Q 007044 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS 260 (620)
Q Consensus 182 ~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~ 260 (620)
....+|++|.|||||-|+..++.++.++. ++++..++||.++......+++-++|+|+||||++.+.+++.+++.
T Consensus 109 ----g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk 184 (387)
T KOG0329|consen 109 ----GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLK 184 (387)
T ss_pred ----CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchh
Confidence 24569999999999999999999998874 7899999999999999889999999999999999999999999999
Q ss_pred CccEEEeccchhhhhc-CcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEE
Q 007044 261 SLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 339 (620)
+++.+|+||||.|+.. ..+.+++.|++..|. ..|+++||||++..++...++|+ .+|..|.+... ...+...++|
T Consensus 185 ~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~--~KQvmmfsatlskeiRpvC~kFm-QdPmEi~vDdE-~KLtLHGLqQ 260 (387)
T KOG0329|consen 185 NVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCHKFM-QDPMEIFVDDE-AKLTLHGLQQ 260 (387)
T ss_pred hcceeehhhHHHHHHHHHHHHHHHHHhhcCcc--cceeeeeeeecchhhHHHHHhhh-cCchhhhccch-hhhhhhhHHH
Confidence 9999999999999864 578899999999988 67999999999999999999999 57777765543 3456667889
Q ss_pred EEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcccchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 340 ~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
+|+......+...+.++++.+. -.+++||+.+... +. | ..+ +|||+++
T Consensus 261 ~YvkLke~eKNrkl~dLLd~Le-FNQVvIFvKsv~R--------------------------l~-f---~kr-~vat~lf 308 (387)
T KOG0329|consen 261 YYVKLKENEKNRKLNDLLDVLE-FNQVVIFVKSVQR--------------------------LS-F---QKR-LVATDLF 308 (387)
T ss_pred HHHhhhhhhhhhhhhhhhhhhh-hcceeEeeehhhh--------------------------hh-h---hhh-hHHhhhh
Confidence 9999999999999999999884 4689999988654 00 3 223 8999999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCcee
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEH 483 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~ 483 (620)
+||+||..|+.|+|||+|.+..+|+||+|||||.|..|.+|+|++.. ...+..++......+.+
T Consensus 309 grgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~e 374 (387)
T KOG0329|consen 309 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKE 374 (387)
T ss_pred ccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhh
Confidence 99999999999999999999999999999999999999999999887 45566666655554443
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.2e-49 Score=427.03 Aligned_cols=325 Identities=22% Similarity=0.291 Sum_probs=248.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. . ..+|||+||++|+.|+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---~-------------~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---D-------------GITLVISPLISLMEDQVL 69 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---C-------------CcEEEEecHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998842 1 238999999999999998
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHH---Hh-cCCCcEEEeChHHHHHHH-hcCCc-cCCCccEEEeccchhhhhcC--
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEF---KL-KKGIDVVIGTPGRIKDHI-ERGNI-DLSSLKFRVLDEADEMLRMG-- 277 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l-~~~~~IlV~Tp~rl~~~l-~~~~~-~l~~l~~lVlDEah~~l~~~-- 277 (620)
.+..+ ++.+..+.++.....+.. .+ ...++|+++||+++.... ....+ ...++++||+||||++++||
T Consensus 70 ~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 88754 577777777766553322 22 345899999999985432 11122 46789999999999999987
Q ss_pred cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHH
Q 007044 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357 (620)
Q Consensus 278 f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll 357 (620)
|...+..+.......++.++++||||+++.+.......+......+.... ....++....... .......+..++
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s----~~r~nl~~~v~~~-~~~~~~~l~~~l 220 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS----FDRPNLYYEVRRK-TPKILEDLLRFI 220 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC----CCCCCcEEEEEeC-CccHHHHHHHHH
Confidence 67766554322222225789999999999876655555432222222211 1122332222222 112233344444
Q ss_pred HhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE
Q 007044 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (620)
Q Consensus 358 ~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~ 433 (620)
.....+..+||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||
T Consensus 221 ~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~ 300 (470)
T TIGR00614 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH 300 (470)
T ss_pred HHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE
Confidence 433356677999999999999999997 5778999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHH
Q 007044 434 CEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (620)
Q Consensus 434 ~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (620)
|++|.+.+.|+||+|||||.|..|.|++|+++. ...++.+..
T Consensus 301 ~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 301 YSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred eCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999998 555555543
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.7e-48 Score=440.85 Aligned_cols=334 Identities=23% Similarity=0.391 Sum_probs=262.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
.|++++|++.+++++.+.||.+|+|+|.++++. +++|+|++++||||||||++|.+|++..+..+ .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-------------~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-------------G 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------------C
Confidence 578899999999999999999999999999998 77999999999999999999999999988643 2
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
++||++||++||.|+++.|..+.. .++++..++|+...... ....++|+|+||+++..++.++..++.++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 499999999999999999998754 48899999998764432 23458999999999999988776778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccc-cCCceEEeecCCCChHHHHHHHHhcccC-----CcEEEEec----CcccccccceE
Q 007044 269 EADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSD-----KKTIDLVG----NEKMKASTNVR 338 (620)
Q Consensus 269 Eah~~l~~~f~~~l~~il~~~~~-~~~~q~ll~SATl~~~~~~~~~~~~~~~-----~~~i~~~~----~~~~~~~~~i~ 338 (620)
|+|.+.+.+++..++.++..+.. .+..|+++||||+++. ..++. |+... ...+.+.. ........ .
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~ 220 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDD--S 220 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeecccc--c
Confidence 99999998999999888776642 1358999999999873 33332 33111 01111000 00000000 0
Q ss_pred EEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----------------------------------
Q 007044 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------- 384 (620)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~---------------------------------- 384 (620)
+..+.. ..+...+..++.....++++||||+|++.|+.++..|.
T Consensus 221 ~~~~~~--~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 221 QREVEV--PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred cccCCC--ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 111111 11123344444444567899999999999887776553
Q ss_pred ------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cC-----CCCCHHHHHHHhcc
Q 007044 385 ------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-----PPRDVEAYIHRSGR 449 (620)
Q Consensus 385 ------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d-----~P~s~~~yiqr~GR 449 (620)
++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+||
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhc
Confidence 3456799999999999999999999999999999999999999999998 76 68999999999999
Q ss_pred cccCCCc--cEEEEEeCCC
Q 007044 450 TGRAGNT--GVAVMLYDPR 466 (620)
Q Consensus 450 tgR~g~~--G~~i~l~~~~ 466 (620)
|||.|.. |.|++++...
T Consensus 379 AGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 379 AGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCCCCCceEEEEecCc
Confidence 9999974 9999999775
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.8e-47 Score=435.47 Aligned_cols=371 Identities=19% Similarity=0.298 Sum_probs=264.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (620)
+++.+.+.+.+ +|..|||+|.++||.+++|+|++++||||||||++|.+|+++.+....... ....++++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----ELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc----CCCCCeEEEEEcC
Confidence 56777777665 799999999999999999999999999999999999999999887532110 1134678999999
Q ss_pred cHHHHHHHHHHHHH-------hh----cCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc--cCCC
Q 007044 196 TRELAKQVHEDFDV-------YG----GAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--DLSS 261 (620)
Q Consensus 196 treLa~Qv~~~~~~-------~~----~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~--~l~~ 261 (620)
||+||.|+++.+.. ++ ... ++++...+|+.+...+...+...++|+|+||++|..++.+..+ .+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999876542 22 223 6789999999988887777888899999999999888865433 4789
Q ss_pred ccEEEeccchhhhhcCcHHHHHHHHHhccc--cCCceEEeecCCCChHHHHHHHHhcccC-----CcEEEEecCcccccc
Q 007044 262 LKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSD-----KKTIDLVGNEKMKAS 334 (620)
Q Consensus 262 l~~lVlDEah~~l~~~f~~~l~~il~~~~~--~~~~q~ll~SATl~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~ 334 (620)
+++||+||+|.|++..++..+..++..+.. ....|+++||||+++. ..++. ++... +..+.+..... ...
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~-~L~~~~~~~~~r~~~iv~~~~-~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAK-FLVGYEDDGEPRDCEIVDARF-VKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHH-HhcCccccCCCCceEEEccCC-Ccc
Confidence 999999999999987777666655544432 1257999999999873 33333 33111 22222221110 000
Q ss_pred cceEEEE-----EeCCchhh-hhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----------cchhhccccchHHH
Q 007044 335 TNVRHIV-----LPCSSSAR-SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------GARALHGDIQQSQR 398 (620)
Q Consensus 335 ~~i~~~~-----~~~~~~~~-~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----------~~~~lh~~l~~~~R 398 (620)
..+.... ........ ......+......+.++||||||+..|+.++..|. .+..+||+|++.+|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 1111000 00111111 12222233333456889999999999999988775 36789999999999
Q ss_pred HHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCC-CccEEEEEeCCC---chHHHHHH
Q 007044 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-NTGVAVMLYDPR---KSSVSKIE 474 (620)
Q Consensus 399 ~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g-~~G~~i~l~~~~---~~~~~~i~ 474 (620)
..+++.|++|.++|||||+++++|||+|+|++||+|+.|.+..+|+||+||+||.+ ..+.++++.... ......++
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~ 409 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLK 409 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999874 333343333333 22222334
Q ss_pred HHhCCCceeeCCCC-HHHHHH
Q 007044 475 RESGVKFEHISAPQ-PADIAK 494 (620)
Q Consensus 475 ~~~~~~~~~~~~p~-~~~i~~ 494 (620)
......++.+..|. +.++..
T Consensus 410 ~~~~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 410 KAREGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred HHHhCCCCCCCCCCCcHHHHH
Confidence 44455566665553 344443
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.6e-47 Score=423.53 Aligned_cols=334 Identities=20% Similarity=0.292 Sum_probs=253.3
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE
Q 007044 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (620)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li 192 (620)
+++.....+.|++ .||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..+||
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--~--------------g~tlV 70 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--D--------------GLTLV 70 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--C--------------CCEEE
Confidence 3445555556655 59999999999999999999999999999999999999999843 1 13899
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH---h-cCCCcEEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---L-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 193 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~---l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
|+|+++|+.|+.+.+..+ ++.+.++.++.+...+... + ....+|+++||+++........+...++++||+|
T Consensus 71 isPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVID 146 (607)
T PRK11057 71 VSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVD 146 (607)
T ss_pred EecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEe
Confidence 999999999999988764 5777777777665544322 2 2458999999999974322223445578999999
Q ss_pred cchhhhhcC--cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 269 EADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 269 Eah~~l~~~--f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
|||++++|| |...+..+.......++.++++||||++..+.......+......+..... ...++..... ..
T Consensus 147 EaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~----~r~nl~~~v~--~~ 220 (607)
T PRK11057 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF----DRPNIRYTLV--EK 220 (607)
T ss_pred CccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC----CCCcceeeee--ec
Confidence 999999987 666654443222222257899999999987765444443222223322211 1223322221 12
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
......+..++... .+.++||||+|++.++.++..|. .+..+||+|++.+|..+++.|+.|+++|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred cchHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhcc
Confidence 22333444444443 56799999999999999999997 57789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHH
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~ 474 (620)
||+|+|++|||||+|.+.++|+||+|||||.|.+|.|++|+++. ...++.+.
T Consensus 300 IDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 44555444
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.2e-47 Score=421.13 Aligned_cols=314 Identities=21% Similarity=0.260 Sum_probs=245.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE-EcccHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV-LLPTRELAKQVH 204 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~-dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li-l~PtreLa~Qv~ 204 (620)
.||. |||||.++||.++.|+ ++++++|||||||.+|.++++.. ... ...|+.|| ++|||+||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----------~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----------AKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----------ccccceEEEeCchHHHHHHHH
Confidence 5897 9999999999999998 68888999999999877665522 111 23455666 669999999999
Q ss_pred HHHHHhhcCC-----------------------CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCcc---
Q 007044 205 EDFDVYGGAV-----------------------GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID--- 258 (620)
Q Consensus 205 ~~~~~~~~~~-----------------------~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~--- 258 (620)
+.+.++++.. ++++.+++||.+...|...+..+++|||||+ |++.++.++
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999888644 4889999999999999999999999999994 666666552
Q ss_pred -------------CCCccEEEeccchhhhhcCcHHHHHHHHHhc--cc-cCCceEEeecCCCChHHHHHHHHhcccCCcE
Q 007044 259 -------------LSSLKFRVLDEADEMLRMGFVEDVELILGKV--ED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (620)
Q Consensus 259 -------------l~~l~~lVlDEah~~l~~~f~~~l~~il~~~--~~-~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~ 322 (620)
+++++++|||||| ++++|.+++..|+..+ +. ..++|+++||||+|..+..+...++. ++..
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~-~p~~ 232 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA-EDYK 232 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-CCce
Confidence 7889999999999 6899999999999975 22 12369999999999988888777774 4444
Q ss_pred EEEecCcccccccceEEEEEeCCchhhhhhHH-HHHHh-cCCCCeEEEEEcccccHHHHHHhcc--cchhhccccchHHH
Q 007044 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIP-DIIRC-YSSGGRTIIFTETKESASQLADLLP--GARALHGDIQQSQR 398 (620)
Q Consensus 323 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~-~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~--~~~~lh~~l~~~~R 398 (620)
+.+... .....++.++ +.+....+...+. .+... ...++++||||||+..|+.++..|. .+..+||+|++.+|
T Consensus 233 i~V~~~--~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR 309 (844)
T TIGR02621 233 HPVLKK--RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAER 309 (844)
T ss_pred eecccc--cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHH
Confidence 444322 2334455554 3444333332222 22111 1356789999999999999999997 45789999999999
Q ss_pred H-----HHHHHhhc----CC-------ceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCc-cEEEE
Q 007044 399 E-----VTLAGFRS----GK-------FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT-GVAVM 461 (620)
Q Consensus 399 ~-----~~~~~F~~----g~-------~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~-G~~i~ 461 (620)
. .++++|++ |. .+|||||+++++||||+. ++||++..| .++|+||+||+||.|+. |..++
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 9 88999987 44 689999999999999987 899998877 69999999999999985 44466
Q ss_pred EeCC
Q 007044 462 LYDP 465 (620)
Q Consensus 462 l~~~ 465 (620)
++.+
T Consensus 387 vv~~ 390 (844)
T TIGR02621 387 VVHL 390 (844)
T ss_pred EEee
Confidence 6644
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.9e-46 Score=413.95 Aligned_cols=325 Identities=22% Similarity=0.339 Sum_probs=255.0
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 123 KLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 123 ~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
.|++ .||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. .+ .++||+|+++|+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--~g--------------~~lVisPl~sL~~ 67 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--KG--------------LTVVISPLISLMK 67 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--CC--------------cEEEEcCCHHHHH
Confidence 4544 79999999999999999999999999999999999999998842 11 3899999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchHHHHHH----hcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC
Q 007044 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (620)
Q Consensus 202 Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~ 277 (620)
|+...+..+ ++.+..+.++.+....... .....+|+++||++|........+...++++||+||||++.+||
T Consensus 68 dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 68 DQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999888764 5778888888776654332 23568999999999976444344556789999999999999887
Q ss_pred --cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHH
Q 007044 278 --FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355 (620)
Q Consensus 278 --f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 355 (620)
|...+..+.......+..++++||||++..+.......+......+.... ....++...... ...+...+..
T Consensus 144 ~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~nl~~~v~~--~~~~~~~l~~ 217 (591)
T TIGR01389 144 HDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITS----FDRPNLRFSVVK--KNNKQKFLLD 217 (591)
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC----CCCCCcEEEEEe--CCCHHHHHHH
Confidence 77776665443332224569999999999887766666532222222111 112233322222 2334455566
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 007044 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (620)
Q Consensus 356 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~V 431 (620)
++... .+.++||||+|+..++.++..|. .+..+||+|++.+|..+++.|..|.++|||||+++++|||+|+|++|
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 66554 36789999999999999999987 46789999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHH
Q 007044 432 IQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (620)
Q Consensus 432 I~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~ 474 (620)
|||++|.+.+.|+||+|||||.|..|.|+++|++. ...++.+.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 44444443
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-45 Score=418.18 Aligned_cols=333 Identities=22% Similarity=0.318 Sum_probs=259.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
.|+++++++.+.+.|.+.||..|+|+|.++++. +++|+|++++||||||||++|.+|++..+... +.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~------------~~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE------------GG 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc------------CC
Confidence 477899999999999999999999999999986 78999999999999999999999999987642 23
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
++|||+|+++||.|+++.|..+. ..++++..++|+.+.... ....++|+|+||+++..++.++..+++++++||+|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 69999999999999999998764 468999999998765432 23468999999999999888777778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccc-cc-eEEEEEeCCc
Q 007044 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TN-VRHIVLPCSS 346 (620)
Q Consensus 269 Eah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-i~~~~~~~~~ 346 (620)
|+|.+.+.++...++.++..+.. .+|++++|||+++. ..++. |+... . +. ........ .. +.+.......
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~--~~qiI~lSATl~n~-~~la~-wl~~~-~-~~--~~~rpv~l~~~~~~~~~~~~~~ 217 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLG--RAQILGLSATVGNA-EELAE-WLNAE-L-VV--SDWRPVKLRKGVFYQGFLFWED 217 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCc--CCcEEEEEccCCCH-HHHHH-HhCCc-c-cc--CCCCCCcceeeEecCCeeeccC
Confidence 99999999999999999998875 68999999999873 45544 44221 1 10 00000000 00 0000111111
Q ss_pred h--hh--hhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-------------------------------------c
Q 007044 347 S--AR--SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------------------------------------G 385 (620)
Q Consensus 347 ~--~~--~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-------------------------------------~ 385 (620)
. .+ ......+.+....++++||||+|++.|+.++..+. +
T Consensus 218 ~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g 297 (720)
T PRK00254 218 GKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGG 297 (720)
T ss_pred cchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhC
Confidence 1 00 01111122223356899999999999877654431 3
Q ss_pred chhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE-------cCCCC-CHHHHHHHhcccccCC--C
Q 007044 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ-------CEPPR-DVEAYIHRSGRTGRAG--N 455 (620)
Q Consensus 386 ~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~-------~d~P~-s~~~yiqr~GRtgR~g--~ 455 (620)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||. |+.|. +..+|+||+|||||.| .
T Consensus 298 v~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 298 VAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 678999999999999999999999999999999999999999999994 55554 5779999999999976 5
Q ss_pred ccEEEEEeCCC
Q 007044 456 TGVAVMLYDPR 466 (620)
Q Consensus 456 ~G~~i~l~~~~ 466 (620)
.|.+++++...
T Consensus 378 ~G~~ii~~~~~ 388 (720)
T PRK00254 378 VGEAIIVATTE 388 (720)
T ss_pred CceEEEEecCc
Confidence 79999998765
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4e-44 Score=406.77 Aligned_cols=319 Identities=24% Similarity=0.288 Sum_probs=248.8
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcC------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
++.+..+.+.+.+ .+| +|||+|.++|+.++++ +|++++|+||||||.+|++|++..+..+
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g------------ 500 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG------------ 500 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC------------
Confidence 4455666666655 577 5999999999999975 7999999999999999999999888653
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHH---HHhcC-CCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
.+++|++||++||.|+++.|..++...++++..++|+.+...+. ..+.. .++||||||..+ ++.+.+.++
T Consensus 501 -~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L 574 (926)
T TIGR00580 501 -KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDL 574 (926)
T ss_pred -CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccC
Confidence 36999999999999999999998888889999999887654433 33333 599999999432 345678999
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
++||+||+|++. ......+..++. ++|+++||||+.+....+....+ .+...+..... ....+.+.+.
T Consensus 575 ~llVIDEahrfg-----v~~~~~L~~~~~--~~~vL~~SATpiprtl~~~l~g~-~d~s~I~~~p~----~R~~V~t~v~ 642 (926)
T TIGR00580 575 GLLIIDEEQRFG-----VKQKEKLKELRT--SVDVLTLSATPIPRTLHMSMSGI-RDLSIIATPPE----DRLPVRTFVM 642 (926)
T ss_pred CEEEeecccccc-----hhHHHHHHhcCC--CCCEEEEecCCCHHHHHHHHhcC-CCcEEEecCCC----CccceEEEEE
Confidence 999999999852 233445555554 68999999998775555443333 34444443221 1223444444
Q ss_pred eCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEec
Q 007044 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (620)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT 416 (620)
.... ..+...+......+++++|||+++..++.++..|. .+..+||+|++.+|..++++|++|+++|||||
T Consensus 643 ~~~~---~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT 719 (926)
T TIGR00580 643 EYDP---ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT 719 (926)
T ss_pred ecCH---HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 3322 11222333444467899999999999999988876 46789999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCC-CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 417 NVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 417 dv~~rGlDi~~v~~VI~~d~P~-s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+++++|||+|++++||+++.|. +...|+||+||+||.|+.|.|++|+.+.
T Consensus 720 ~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 720 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999976 5779999999999999999999999754
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-43 Score=401.62 Aligned_cols=330 Identities=20% Similarity=0.298 Sum_probs=252.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (620)
.|++++|++.+++.+...||. |+|+|.++++.+.+|+|++++||||||||++|.+++++.+..+ .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------------~k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------------LK 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------------Cc
Confidence 477899999999999999997 9999999999999999999999999999999999999888653 24
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEecc
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDE 269 (620)
+||++|+++||.|++++|.++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++||+||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 9999999999999999998764 467888888887654332 234689999999999988887766789999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccc-cCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccce-----EEEEEe
Q 007044 270 ADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLP 343 (620)
Q Consensus 270 ah~~l~~~f~~~l~~il~~~~~-~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i-----~~~~~~ 343 (620)
||++.+.++...++.++..+.. .++.|++++|||+++. ..++. |+.... +. .... ..+..+ .+.+..
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~--~~--~~~r-~vpl~~~i~~~~~~~~~ 216 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL--IK--SNFR-PVPLKLGILYRKRLILD 216 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc--cC--CCCC-CCCeEEEEEecCeeeec
Confidence 9999988888888888765432 1268999999999873 44444 432111 10 0000 000000 011111
Q ss_pred CCchhhhhhHHHHHH-hcCCCCeEEEEEcccccHHHHHHhcc-----------------------------cchhhcccc
Q 007044 344 CSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP-----------------------------GARALHGDI 393 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~-----------------------------~~~~lh~~l 393 (620)
........ +..++. ....++++||||++++.++.++..|. ++..+||+|
T Consensus 217 ~~~~~~~~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 217 GYERSQVD-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred cccccccc-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 11111111 223333 24467899999999999998887663 245689999
Q ss_pred chHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcC---------CCCCHHHHHHHhcccccCCC--ccEEEEE
Q 007044 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE---------PPRDVEAYIHRSGRTGRAGN--TGVAVML 462 (620)
Q Consensus 394 ~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d---------~P~s~~~yiqr~GRtgR~g~--~G~~i~l 462 (620)
++.+|..+++.|++|.++|||||+++++|+|+|+..+|| +| .|.+..+|.||+|||||.|. .|.++++
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999875554 44 35688999999999999985 6778877
Q ss_pred eCCC
Q 007044 463 YDPR 466 (620)
Q Consensus 463 ~~~~ 466 (620)
+...
T Consensus 375 ~~~~ 378 (674)
T PRK01172 375 AASP 378 (674)
T ss_pred ecCc
Confidence 6554
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.9e-43 Score=406.04 Aligned_cols=314 Identities=22% Similarity=0.225 Sum_probs=245.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 007044 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (620)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~g------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~L 191 (620)
....+.....+| .||++|.++|+.++.+ +|++++|+||||||.+|+.+++..+.. +++++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------------g~qvl 653 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------------HKQVA 653 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------------CCeEE
Confidence 334455566777 7999999999999987 899999999999999999888877643 34699
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 192 il~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
||+||++||.|+++.|...+...++++.+++|+.+...+...+. ..++|+||||+.+ +..+.+.++++||+
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEE
Confidence 99999999999999999877777889999999888776654432 4689999999744 23566889999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||+|++ |+. ....+..++. ++|+++||||+++....++...+ .++..+...... ...+.+++......
T Consensus 729 DEahrf---G~~--~~e~lk~l~~--~~qvLl~SATpiprtl~l~~~gl-~d~~~I~~~p~~----r~~v~~~~~~~~~~ 796 (1147)
T PRK10689 729 DEEHRF---GVR--HKERIKAMRA--DVDILTLTATPIPRTLNMAMSGM-RDLSIIATPPAR----RLAVKTFVREYDSL 796 (1147)
T ss_pred echhhc---chh--HHHHHHhcCC--CCcEEEEcCCCCHHHHHHHHhhC-CCcEEEecCCCC----CCCceEEEEecCcH
Confidence 999987 432 2344556655 68999999998887777766666 466666542221 23344444433221
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEecccccc
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~r 421 (620)
.....++.....+++++||||++..++.++..|. .+..+||+|++.+|.+++.+|++|+++|||||+++++
T Consensus 797 ---~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIier 873 (1147)
T PRK10689 797 ---VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 (1147)
T ss_pred ---HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhc
Confidence 1223344444467899999999999888887775 5678999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCC-CCHHHHHHHhcccccCCCccEEEEEeCC
Q 007044 422 GLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGNTGVAVMLYDP 465 (620)
Q Consensus 422 GlDi~~v~~VI~~d~P-~s~~~yiqr~GRtgR~g~~G~~i~l~~~ 465 (620)
|||+|++++||..+.. .+...|+||+||+||.|+.|.|++++..
T Consensus 874 GIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999999954332 2455799999999999999999999854
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.7e-42 Score=402.46 Aligned_cols=286 Identities=22% Similarity=0.320 Sum_probs=224.8
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 122 EKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 122 ~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
+.+++ .|+ .|||+|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||+||
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------------~g~~alIL~PTreLa 136 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeccHHHH
Confidence 34444 377 8999999999999999999999999999995 66776655532 245799999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEeCCcch-----HHHHHHhc-CCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 201 KQVHEDFDVYGGAVGLTSCCLYGGAPY-----HAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~v~~~~gg~~~-----~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
.|+++.+..++...++.+..++|+.+. ..+...+. ..++|+|+||++|.+++. .+....+++||+||||+|+
T Consensus 137 ~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 137 EQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhh
Confidence 999999999998888888888877643 22233344 459999999999999887 4566779999999999999
Q ss_pred h-----------cCcH-HHHHHHHHhcccc----------------------CCceEEeecCCCChH-HHHHHHHhcccC
Q 007044 275 R-----------MGFV-EDVELILGKVEDA----------------------NKVQTLLFSATLPSW-VKHISTKFLKSD 319 (620)
Q Consensus 275 ~-----------~~f~-~~l~~il~~~~~~----------------------~~~q~ll~SATl~~~-~~~~~~~~~~~~ 319 (620)
+ +||. +++..++..++.. ...|+++||||+++. +.. .++ ..
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~-~~ 290 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLF-RE 290 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHh-hc
Confidence 6 7885 6788888777631 157999999999864 332 112 12
Q ss_pred CcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEccccc---HHHHHHhcc----cchhhccc
Q 007044 320 KKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES---ASQLADLLP----GARALHGD 392 (620)
Q Consensus 320 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~---~~~l~~~l~----~~~~lh~~ 392 (620)
...+.+... .....++.+.++.+. .+...+..++.... .++||||+++.. ++.++..|. .+..+||+
T Consensus 291 ll~~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~ 364 (1176)
T PRK09401 291 LLGFEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISG 364 (1176)
T ss_pred cceEEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCc
Confidence 222333222 235567888888765 46667777777653 579999999888 999999997 56789999
Q ss_pred cchHHHHHHHHHhhcCCceEEEe----cccccccCCCCC-ccEEEEcCCCC
Q 007044 393 IQQSQREVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR 438 (620)
Q Consensus 393 l~~~~R~~~~~~F~~g~~~vLva----Tdv~~rGlDi~~-v~~VI~~d~P~ 438 (620)
| .+.+++|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 365 l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 365 F-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred H-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9 23469999999999999 699999999999 89999999996
No 50
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.3e-42 Score=382.01 Aligned_cols=314 Identities=18% Similarity=0.231 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHcCCcEEEECCCCChhhHH---------hHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLA---------FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 134 ~~Q~~~i~~il~g~dvi~~a~TGsGKTla---------~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
.+|.++++.+++|+|+|++|+||||||.+ |++|.+..+..-.. .....+++|++|||+||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-------~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-------NFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-------ccCCcEEEEECcHHHHHHHHH
Confidence 47999999999999999999999999997 44455544432100 113457999999999999999
Q ss_pred HHHHHhhcC---CCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHH
Q 007044 205 EDFDVYGGA---VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (620)
Q Consensus 205 ~~~~~~~~~---~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~ 281 (620)
..+....+. .+..+...+||.+. .+......+.+|+|+|++.. ...++++++|||||||++..++ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hH
Confidence 998765543 46778889999873 22233334789999998631 2358899999999999998776 44
Q ss_pred HHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc----------hhhhh
Q 007044 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS----------SARSQ 351 (620)
Q Consensus 282 l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~ 351 (620)
+..++..+... .+|+++||||++..+..+ ..|+ .++..+.+.+ .+...+++.++.... ..+..
T Consensus 310 lL~llk~~~~~-~rq~ILmSATl~~dv~~l-~~~~-~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 310 IIAVARKHIDK-IRSLFLMTATLEDDRDRI-KEFF-PNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred HHHHHHHhhhh-cCEEEEEccCCcHhHHHH-HHHh-cCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 55555544321 359999999999888776 5677 4677776642 223456777664331 12222
Q ss_pred hHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHh-hcCCceEEEecccccccC
Q 007044 352 VIPDIIRCY-SSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGF-RSGKFMTLVATNVAARGL 423 (620)
Q Consensus 352 ~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F-~~g~~~vLvaTdv~~rGl 423 (620)
.+..+.... ..++++||||+++.+++.++..|. .+..+||+|++. ++.+++| ++|+.+||||||+|+|||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 333333322 235789999999999999998886 466899999975 5677787 789999999999999999
Q ss_pred CCCCccEEEEcC---CCC---------CHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHH
Q 007044 424 DINDVQLIIQCE---PPR---------DVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (620)
Q Consensus 424 Di~~v~~VI~~d---~P~---------s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~ 474 (620)
|||+|++||++| .|. |.++|+||+|||||. ++|.|+.|+++. ...+.++.
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 999999999999 665 889999999999999 899999999988 44466665
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.7e-42 Score=383.88 Aligned_cols=317 Identities=21% Similarity=0.302 Sum_probs=237.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 007044 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (620)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~g------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~L 191 (620)
..+.+.+...+| +||++|.++|+.++.+ .+.+++|+||||||++|++|++..+..+ .+++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-------------~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-------------YQVA 288 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------------CcEE
Confidence 334556678888 7999999999999876 3689999999999999999999988653 3599
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHH---HHhc-CCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 192 il~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
|++||++||.|+++.+.+++...++++..++|+.+..... ..+. ..++|+||||+++.+ .+.+.++++||+
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI 363 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII 363 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE
Confidence 9999999999999999999888899999999998766532 2333 358999999998854 456889999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||+|++.. .....++........+++++||||+.+....+. .+...+...+... ......+...++.. .
T Consensus 364 DEaH~fg~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~-~~~~l~~~~i~~~----p~~r~~i~~~~~~~--~ 432 (630)
T TIGR00643 364 DEQHRFGV----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALT-VYGDLDTSIIDEL----PPGRKPITTVLIKH--D 432 (630)
T ss_pred echhhccH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH-hcCCcceeeeccC----CCCCCceEEEEeCc--c
Confidence 99998632 222233333331124789999999755332221 1111111222111 11122333333322 2
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEccccc--------HHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEE
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKES--------ASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~~--------~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vL 413 (620)
.+..++..+......+.+++|||++... ++.++..|. .+..+||+|++.+|..+++.|++|+.+||
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 2344455555555567899999998643 444444443 47789999999999999999999999999
Q ss_pred EecccccccCCCCCccEEEEcCCCC-CHHHHHHHhcccccCCCccEEEEEeC
Q 007044 414 VATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYD 464 (620)
Q Consensus 414 vaTdv~~rGlDi~~v~~VI~~d~P~-s~~~yiqr~GRtgR~g~~G~~i~l~~ 464 (620)
|||+++++|||+|++++||+|+.|+ +...|.||+||+||.|+.|.|++++.
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999999997 57788889999999999999999993
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.5e-42 Score=403.44 Aligned_cols=339 Identities=24% Similarity=0.342 Sum_probs=244.2
Q ss_pred EECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh------------cCCCceE
Q 007044 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG------------GAVGLTS 218 (620)
Q Consensus 151 ~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~------------~~~~~~v 218 (620)
++||||||||++|.+|+++.+...............++++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999997643110000111246789999999999999999886421 1247899
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC-CccCCCccEEEeccchhhhhcCcHHH----HHHHHHhccccC
Q 007044 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVLDEADEMLRMGFVED----VELILGKVEDAN 293 (620)
Q Consensus 219 ~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-~~~l~~l~~lVlDEah~~l~~~f~~~----l~~il~~~~~~~ 293 (620)
...+|+++...+...+++.+||||+||++|..++.++ ...++++++|||||+|.|++..++.+ ++.+...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~-- 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT-- 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC--
Confidence 9999999998887777888999999999999888654 34689999999999999987654444 4444444443
Q ss_pred CceEEeecCCCChHHHHHHHHhcccC-CcEEEEecCcccccccceEEEEEeCCchhh---------------------hh
Q 007044 294 KVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSSAR---------------------SQ 351 (620)
Q Consensus 294 ~~q~ll~SATl~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------~~ 351 (620)
+.|+|+||||+++. ..++ .|+... +..+ ..... .....+. ++++...... ..
T Consensus 159 ~~QrIgLSATI~n~-eevA-~~L~g~~pv~I--v~~~~-~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~ 232 (1490)
T PRK09751 159 SAQRIGLSATVRSA-SDVA-AFLGGDRPVTV--VNPPA-MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPY 232 (1490)
T ss_pred CCeEEEEEeeCCCH-HHHH-HHhcCCCCEEE--ECCCC-CcccceE-EEEecCchhhccccccccccccchhhhhhhhHH
Confidence 68999999999983 5555 455322 3333 22111 1112222 2222211100 01
Q ss_pred hHHHHHHhcCCCCeEEEEEcccccHHHHHHhccc-------------------------------------chhhccccc
Q 007044 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG-------------------------------------ARALHGDIQ 394 (620)
Q Consensus 352 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-------------------------------------~~~lh~~l~ 394 (620)
....++.....+.++||||||+..|+.++..|.. +..+||+|+
T Consensus 233 v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS 312 (1490)
T PRK09751 233 IETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS 312 (1490)
T ss_pred HHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC
Confidence 1223444444568999999999999999977752 346899999
Q ss_pred hHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccC-CCccEEEEEeCCCchHH---
Q 007044 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-GNTGVAVMLYDPRKSSV--- 470 (620)
Q Consensus 395 ~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~-g~~G~~i~l~~~~~~~~--- 470 (620)
+.+|..+++.|++|.+++||||+.+++||||++|++||||+.|.++.+|+||+||+||. |..+.++++.......+
T Consensus 313 keeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~ 392 (1490)
T PRK09751 313 KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSA 392 (1490)
T ss_pred HHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999996 33445554443333222
Q ss_pred HHHHHHhCCCceeeCCCC-HHHHHHHHh
Q 007044 471 SKIERESGVKFEHISAPQ-PADIAKAAG 497 (620)
Q Consensus 471 ~~i~~~~~~~~~~~~~p~-~~~i~~~~~ 497 (620)
..++......++.+..|. +-++..+..
T Consensus 393 ~~ve~~l~g~iE~~~~p~nplDVLaqqi 420 (1490)
T PRK09751 393 VIVECMFAGRLENLTPPHNPLDVLAQQT 420 (1490)
T ss_pred HHHHHHhcCCCCccCCCCChHHHHHHHH
Confidence 246677777888877664 445655443
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=381.59 Aligned_cols=359 Identities=22% Similarity=0.319 Sum_probs=277.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (620)
|++.+.+++... |..|||.|.++||.+.+|+|+++.||||||||+|+.+|+++.+..... .....+..+|||+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-----~~~~~~i~~lYIsP 81 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-----GKLEDGIYALYISP 81 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-----CCCCCceEEEEeCc
Confidence 689999999998 999999999999999999999999999999999999999999987631 11235688999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC--ccCCCccEEEeccchhh
Q 007044 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADEM 273 (620)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~--~~l~~l~~lVlDEah~~ 273 (620)
.|+|.+.+...+..++...|+.+..-+|+++.....+..++.|||+|+||+.|.-++.... -.|.++++||+||.|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 9999999999999999999999999999999988888889999999999999987776532 24889999999999999
Q ss_pred hhcCcHHHHHHHHHhccccC-CceEEeecCCCChHHHHHHHHhcccCC---cEEEEecCcccccccceEEEEEeCCc---
Q 007044 274 LRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDK---KTIDLVGNEKMKASTNVRHIVLPCSS--- 346 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~-~~q~ll~SATl~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~i~~~~~~~~~--- 346 (620)
.+...+.++.--+..+.... ..|.+++|||..+. ..+ .+|+.... ..+.+... .+.+..++....
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~v-arfL~g~~~~~~Iv~~~~~------k~~~i~v~~p~~~~~ 233 (814)
T COG1201 162 AESKRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEV-AKFLVGFGDPCEIVDVSAA------KKLEIKVISPVEDLI 233 (814)
T ss_pred hccccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHH-HHHhcCCCCceEEEEcccC------CcceEEEEecCCccc
Confidence 87665555554444443222 58999999999853 333 44443332 23322211 122222221111
Q ss_pred ---hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcCCceEEEeccc
Q 007044 347 ---SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (620)
Q Consensus 347 ---~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv 418 (620)
......+..+.+.......+|||+||+..++.++..|. .+..+||.++..+|..+.++|++|+.+++|||..
T Consensus 234 ~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSS 313 (814)
T COG1201 234 YDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSS 313 (814)
T ss_pred cccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccc
Confidence 11122333343434455689999999999999998887 5678999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCCCCHHHHHHHhccccc-CCCccEEEEEeCCCchH---HHHHHHHhCCCceeeCCCC
Q 007044 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR-AGNTGVAVMLYDPRKSS---VSKIERESGVKFEHISAPQ 488 (620)
Q Consensus 419 ~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR-~g~~G~~i~l~~~~~~~---~~~i~~~~~~~~~~~~~p~ 488 (620)
++-|||+.++++||+|+.|.++..++||+||+|+ .|.....+.+....... ..-......-.++...+|.
T Consensus 314 LELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~ 387 (814)
T COG1201 314 LELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPK 387 (814)
T ss_pred hhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 9999999999999999999999999999999995 45555666665554222 2233344455566666554
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-42 Score=385.12 Aligned_cols=314 Identities=23% Similarity=0.329 Sum_probs=236.0
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHHHHcC------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeE
Q 007044 118 VPLREKL-KSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (620)
Q Consensus 118 ~~l~~~l-~~~g~~~~~~~Q~~~i~~il~g------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (620)
..+.+.+ ...+| +||++|.++++.+..+ .+++++|+||||||++|++|++..+..+ .++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------------~q~ 313 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------------YQA 313 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------------CeE
Confidence 4444444 45566 7999999999999876 4899999999999999999999988643 469
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHH---HHhcC-CCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 191 Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
+|++||++||.|+++.+..++...++++..++|+.+..... ..+.. .++|+||||+++.+ ...+.++++||
T Consensus 314 lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvV 388 (681)
T PRK10917 314 ALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVI 388 (681)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEE
Confidence 99999999999999999999988899999999999864433 33444 59999999998854 34588999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||+|++... . ...+..... .+++++||||..+....+.. +...+...++.. ......+...+...
T Consensus 389 IDE~Hrfg~~----q-r~~l~~~~~--~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~----p~~r~~i~~~~~~~-- 454 (681)
T PRK10917 389 IDEQHRFGVE----Q-RLALREKGE--NPHVLVMTATPIPRTLAMTA-YGDLDVSVIDEL----PPGRKPITTVVIPD-- 454 (681)
T ss_pred EechhhhhHH----H-HHHHHhcCC--CCCEEEEeCCCCHHHHHHHH-cCCCceEEEecC----CCCCCCcEEEEeCc--
Confidence 9999987321 1 222222222 57899999997664433322 221122222211 11123344444432
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEccccc--------HHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceE
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKES--------ASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMT 412 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~--------~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~v 412 (620)
.....++..+......+.+++|||++.++ +..+++.|. .+..+||+|++.+|..++++|++|+++|
T Consensus 455 ~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~I 534 (681)
T PRK10917 455 SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDI 534 (681)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCE
Confidence 22333444555555577899999996543 333344332 5778999999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEEcCCCCC-HHHHHHHhcccccCCCccEEEEEeC
Q 007044 413 LVATNVAARGLDINDVQLIIQCEPPRD-VEAYIHRSGRTGRAGNTGVAVMLYD 464 (620)
Q Consensus 413 LvaTdv~~rGlDi~~v~~VI~~d~P~s-~~~yiqr~GRtgR~g~~G~~i~l~~ 464 (620)
||||+++++|||+|++++||+|+.|+. ...|.||+||+||.|..|.|+++++
T Consensus 535 LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 535 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999999999999999984 6778889999999999999999995
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=8.4e-44 Score=350.58 Aligned_cols=277 Identities=32% Similarity=0.497 Sum_probs=225.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcC---CCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGA---VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~---~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.|+++|+-|.||||.|+++.++.|-.+ ..++...+.||.....|...+.++.+|+|+||||+.+.+..+.+.++.+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 5789999999999999999966655443 4567778999999999999999999999999999999999999999999
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhcccc----CCceEEeecCCCCh-HHHHHHHHhcccCCcEEEEecCcccccccce
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA----NKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~----~~~q~ll~SATl~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 337 (620)
+++|+||||.+|..|+.+.+..+...+|.. ..+|.+++|||+.. .+..+..+.| .-|..+++...+ ..+..+
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervm-hfptwVdLkgeD--~vpetv 441 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVM-HFPTWVDLKGED--LVPETV 441 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhc-cCceeEeccccc--ccchhh
Confidence 999999999999999999999888887652 36799999999865 4555666666 456666665543 333344
Q ss_pred EEEEEeCCch-hh-hhhHH-------------------------------------HHHHhcCCCCeEEEEEcccccHHH
Q 007044 338 RHIVLPCSSS-AR-SQVIP-------------------------------------DIIRCYSSGGRTIIFTETKESASQ 378 (620)
Q Consensus 338 ~~~~~~~~~~-~~-~~~l~-------------------------------------~ll~~~~~~~~~iVF~~t~~~~~~ 378 (620)
.|+...+..+ +. ..-+. ..++.+ .-.++||||+|+.+|+.
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDN 520 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchH
Confidence 4433322110 00 00000 111111 23589999999999999
Q ss_pred HHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccc
Q 007044 379 LADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (620)
Q Consensus 379 l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtg 451 (620)
|..++. .+..+||+..+.+|...++.|+.+++++|||||+++|||||.++-++||..+|.+...|+||+||+|
T Consensus 521 Ler~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvg 600 (725)
T KOG0349|consen 521 LERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVG 600 (725)
T ss_pred HHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccc
Confidence 999987 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeCCC
Q 007044 452 RAGNTGVAVMLYDPR 466 (620)
Q Consensus 452 R~g~~G~~i~l~~~~ 466 (620)
|+.+-|.+|.++...
T Consensus 601 raermglaislvat~ 615 (725)
T KOG0349|consen 601 RAERMGLAISLVATV 615 (725)
T ss_pred hhhhcceeEEEeecc
Confidence 999999999988654
No 56
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.9e-41 Score=375.47 Aligned_cols=298 Identities=21% Similarity=0.301 Sum_probs=232.1
Q ss_pred HHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH-HhhcC
Q 007044 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGA 213 (620)
Q Consensus 135 ~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~~~ 213 (620)
+-.+.+..+.++.++|++|+||||||++|.+|+++.... +.+++|+.|||++|.|+++.+. .++..
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------------~~~ilvlqPrR~aA~qiA~rva~~~~~~ 72 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------------GGKIIMLEPRRLAARSAAQRLASQLGEA 72 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------------CCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 334556677788999999999999999999999987521 2369999999999999999885 45555
Q ss_pred CCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchh-hhhcCcHHH-HHHHHHhccc
Q 007044 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-MLRMGFVED-VELILGKVED 291 (620)
Q Consensus 214 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~-~l~~~f~~~-l~~il~~~~~ 291 (620)
.+..|+..+++.+ .....++|+|+|||+|++++.+. ..++++++|||||+|+ +++.+|.-. +..+...++.
T Consensus 73 ~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~ 145 (819)
T TIGR01970 73 VGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE 145 (819)
T ss_pred cCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC
Confidence 6667766665543 23446899999999999999864 5799999999999995 777666543 3445555554
Q ss_pred cCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhh-----hhHHHHHHhcCCCCeE
Q 007044 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-----QVIPDIIRCYSSGGRT 366 (620)
Q Consensus 292 ~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~l~~ll~~~~~~~~~ 366 (620)
+.|+++||||++... ...|+ .+...+...+. ...+.+.|..+....+. ..+..++.. ..+.+
T Consensus 146 --dlqlIlmSATl~~~~---l~~~l-~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~i 212 (819)
T TIGR01970 146 --DLKILAMSATLDGER---LSSLL-PDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSI 212 (819)
T ss_pred --CceEEEEeCCCCHHH---HHHHc-CCCcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcE
Confidence 689999999999753 35666 34555554332 12356666665443332 233333332 35789
Q ss_pred EEEEcccccHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCC-
Q 007044 367 IIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR- 438 (620)
Q Consensus 367 iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~- 438 (620)
|||++++.+++.++..|. .+..+||+|++.+|.++++.|++|..+||||||++++|||||+|++|||+++|+
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 999999999999998885 356799999999999999999999999999999999999999999999999985
Q ss_pred -----------------CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 439 -----------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 439 -----------------s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|..+|+||+|||||. ++|.||.||+..
T Consensus 293 ~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 293 ARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred cccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 345699999999999 799999999866
No 57
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.2e-40 Score=385.35 Aligned_cols=289 Identities=22% Similarity=0.341 Sum_probs=220.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 118 VPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
.++.+.+.+.....|+|+|+.++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------------~g~~vLIL~PTr 131 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------------KGKRCYIILPTT 131 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeCHH
Confidence 34455565555558999999999999999999999999999996 77888776643 245799999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEE---EEeCCcchHHHHH---Hhc-CCCcEEEeChHHHHHHHhcCCccCCCccEEEeccc
Q 007044 198 ELAKQVHEDFDVYGGAVGLTSC---CLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (620)
Q Consensus 198 eLa~Qv~~~~~~~~~~~~~~v~---~~~gg~~~~~~~~---~l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEa 270 (620)
+||.|+++.+..++...++.+. .++||.+...+.. .+. .+++|+|+||++|.+++.+ +.. +++++|+|||
T Consensus 132 eLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 132 LLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeCh
Confidence 9999999999999887666543 4678888765432 333 3599999999999998875 222 8999999999
Q ss_pred hhhhh-----------cCcHHH-HHHHHH----------------------hccccCCce--EEeecCC-CChHHHHHHH
Q 007044 271 DEMLR-----------MGFVED-VELILG----------------------KVEDANKVQ--TLLFSAT-LPSWVKHIST 313 (620)
Q Consensus 271 h~~l~-----------~~f~~~-l~~il~----------------------~~~~~~~~q--~ll~SAT-l~~~~~~~~~ 313 (620)
|+|++ +||.++ ++.++. .++. .+| +++|||| +|..+..
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~q~~li~~SAT~~p~~~~~--- 283 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPG--KKRGCLIVSSATGRPRGKRA--- 283 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhh--ccCcEEEEEeCCCCccccHH---
Confidence 99998 788764 566543 2333 334 5679999 5665432
Q ss_pred HhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEccc---ccHHHHHHhcc----cc
Q 007044 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK---ESASQLADLLP----GA 386 (620)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~---~~~~~l~~~l~----~~ 386 (620)
.++ .....+.+.. ......++.+.++.+.. +...+..++... +.++||||+++ +.|+.++..|. .+
T Consensus 284 ~l~-r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a 356 (1171)
T TIGR01054 284 KLF-RELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKA 356 (1171)
T ss_pred HHc-ccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceE
Confidence 222 2333344322 23455678888775543 234566777665 36799999999 99999999997 56
Q ss_pred hhhccccchHHHHHHHHHhhcCCceEEEe----cccccccCCCCC-ccEEEEcCCCC
Q 007044 387 RALHGDIQQSQREVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR 438 (620)
Q Consensus 387 ~~lh~~l~~~~R~~~~~~F~~g~~~vLva----Tdv~~rGlDi~~-v~~VI~~d~P~ 438 (620)
..+||++++ .+++.|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 357 ~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 357 VAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred EEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 789999973 6899999999999999 599999999999 89999999883
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.7e-40 Score=374.49 Aligned_cols=297 Identities=21% Similarity=0.296 Sum_probs=230.8
Q ss_pred HHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH-HhhcCC
Q 007044 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAV 214 (620)
Q Consensus 136 Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~~~~ 214 (620)
-.+.+..+.+++++|++|+||||||++|.+|+++.... ..+++|++|||++|.|+++.+. .++...
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------------~~~ilvlqPrR~aA~qia~rva~~l~~~~ 76 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------------NGKIIMLEPRRLAARNVAQRLAEQLGEKP 76 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------------CCeEEEECChHHHHHHHHHHHHHHhCccc
Confidence 34556667788999999999999999999999875321 1369999999999999999985 455567
Q ss_pred CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchh-hhhcCcH-HHHHHHHHhcccc
Q 007044 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-MLRMGFV-EDVELILGKVEDA 292 (620)
Q Consensus 215 ~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~-~l~~~f~-~~l~~il~~~~~~ 292 (620)
+..|+..+++.+.. ...++|+|+|||+|++++.++ ..++++++|||||+|+ +++..+. ..+..++..++.
T Consensus 77 g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~- 148 (812)
T PRK11664 77 GETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD- 148 (812)
T ss_pred CceEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc-
Confidence 77888777765432 235789999999999998864 5799999999999997 4444432 223445555654
Q ss_pred CCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhh-----hHHHHHHhcCCCCeEE
Q 007044 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-----VIPDIIRCYSSGGRTI 367 (620)
Q Consensus 293 ~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~l~~ll~~~~~~~~~i 367 (620)
+.|+++||||++... ...|+ .+...+...+. ...+.+.|+......+.. .+..++.. ..+.+|
T Consensus 149 -~lqlilmSATl~~~~---l~~~~-~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iL 216 (812)
T PRK11664 149 -DLKLLIMSATLDNDR---LQQLL-PDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLL 216 (812)
T ss_pred -cceEEEEecCCCHHH---HHHhc-CCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEE
Confidence 689999999998742 34566 34555544332 124666666655444332 33333332 358999
Q ss_pred EEEcccccHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCC--
Q 007044 368 IFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR-- 438 (620)
Q Consensus 368 VF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~-- 438 (620)
||++++.+++.+++.|. .+..+||+|++.+|.+++..|++|+.+||||||++++|||||+|++|||+++|+
T Consensus 217 VFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 217 LFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred EEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 99999999999999886 256799999999999999999999999999999999999999999999988875
Q ss_pred ----------------CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 439 ----------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 439 ----------------s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|.++|+||+|||||. .+|.||.||+..
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 346899999999999 699999999865
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-40 Score=349.80 Aligned_cols=328 Identities=23% Similarity=0.302 Sum_probs=256.1
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 122 EKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 122 ~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
..|+. .||..++|-|.++|..+++|+|+++..|||.||+++|.+|.+-. .+. +|||+|..+|.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G~--------------TLVVSPLiSLM 70 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EGL--------------TLVVSPLISLM 70 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CCC--------------EEEECchHHHH
Confidence 34544 59999999999999999999999999999999999999999843 332 89999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH---hc-CCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc
Q 007044 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---LK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (620)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~---l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~ 276 (620)
....+.+... |+.+.++.+..+...+... +. ...++++-+|++|..---...+.--.+.++||||||++.+|
T Consensus 71 ~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 71 KDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhc
Confidence 9888888764 4777888777665544332 22 34899999999996543222333556789999999999999
Q ss_pred C--cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHH
Q 007044 277 G--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354 (620)
Q Consensus 277 ~--f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 354 (620)
| |++++..+-......+++.++.||||-++.+..-+...+......+..... ..+|+...+.... .......
T Consensus 147 GhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf----dRpNi~~~v~~~~-~~~~q~~- 220 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF----DRPNLALKVVEKG-EPSDQLA- 220 (590)
T ss_pred CCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC----CCchhhhhhhhcc-cHHHHHH-
Confidence 8 999988887766655578999999999998877776666444333332222 2233332222222 1122222
Q ss_pred HHHH-hcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCcc
Q 007044 355 DIIR-CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (620)
Q Consensus 355 ~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~ 429 (620)
.+.. ....++..||||.|++.++.++..|. .+..+||+|+..+|..+.++|..++++|+|||.++++|||.|+|+
T Consensus 221 fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 221 FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 2221 23355779999999999999999998 677899999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHH
Q 007044 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (620)
Q Consensus 430 ~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (620)
+|||||+|.|.++|+|-+|||||.|.+..|++||++. ....+.+..
T Consensus 301 fViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~ 347 (590)
T COG0514 301 FVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIE 347 (590)
T ss_pred EEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHH
Confidence 9999999999999999999999999999999999998 443444433
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.2e-40 Score=354.91 Aligned_cols=321 Identities=21% Similarity=0.239 Sum_probs=244.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|||+|..++|.++.|+ |+.++||+|||++|++|++.....+ ++++|++||++||.|.+++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G-------------~~v~VvTptreLA~qdae~ 163 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG-------------LPVHVITVNDYLAERDAEL 163 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC-------------CeEEEEcCcHHHHHHHHHH
Confidence 455 89999999999999999 9999999999999999999876543 4599999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcCC-------------------------ccCC
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN-------------------------IDLS 260 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~-------------------------~~l~ 260 (620)
+..+....|+++++++||.+. +.+....++||+|||...| .|+|.... ....
T Consensus 164 ~~~l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 164 MRPLYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 999999999999999999864 4555567899999999887 55553321 1235
Q ss_pred CccEEEeccchhhh----------------h--cCcHHHHHHHHHhcccc------------------------------
Q 007044 261 SLKFRVLDEADEML----------------R--MGFVEDVELILGKVEDA------------------------------ 292 (620)
Q Consensus 261 ~l~~lVlDEah~~l----------------~--~~f~~~l~~il~~~~~~------------------------------ 292 (620)
.+.+.|+||+|.+| . ..++.....+...+...
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 68899999999976 0 01111111111111100
Q ss_pred ---------------------------------C----------------------------------------------
Q 007044 293 ---------------------------------N---------------------------------------------- 293 (620)
Q Consensus 293 ---------------------------------~---------------------------------------------- 293 (620)
.
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 0
Q ss_pred ------CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhc-CCCCeE
Q 007044 294 ------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY-SSGGRT 366 (620)
Q Consensus 294 ------~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~ 366 (620)
-.++..||||.+.....+...|. .++..|.. . ... .....+.++.+....+...|..++... ..+.++
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~-l~vv~IPt--~-kp~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREVAGELWSVYG-LPVVRIPT--N-RPS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHhhHHHhcccCcChHHHHHHHHHHC-CCeEEeCC--C-CCc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 03677889998887777777776 34333322 1 111 222334455666777888888887654 246789
Q ss_pred EEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC---Ccc-----EEEEc
Q 007044 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQC 434 (620)
Q Consensus 367 iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~---~v~-----~VI~~ 434 (620)
||||+|+..++.++..|. .+..|||+++ +|+..+..|+.+...|+||||+++||+||+ +|. |||||
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 999999999999999998 5678999865 455555556666667999999999999999 676 99999
Q ss_pred CCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHHHH
Q 007044 435 EPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472 (620)
Q Consensus 435 d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~~~ 472 (620)
++|.+...|+||+|||||.|.+|.|++|++..+..+..
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~ 592 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQS 592 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHh
Confidence 99999999999999999999999999999988555543
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6e-40 Score=388.40 Aligned_cols=322 Identities=18% Similarity=0.242 Sum_probs=245.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 119 PLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 119 ~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
++.+.+++ .|| .|+++|++++|.+++|+|++++||||||||+.++++++.... .++++|||+|||
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-------------~g~~aLVl~PTr 132 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-------------KGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------------cCCeEEEEECHH
Confidence 44556665 799 699999999999999999999999999999965555544322 234699999999
Q ss_pred HHHHHHHHHHHHhhcCC--CceEEEEeCCcchHHHHH---HhcC-CCcEEEeChHHHHHHHhcCCccCCCccEEEeccch
Q 007044 198 ELAKQVHEDFDVYGGAV--GLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (620)
Q Consensus 198 eLa~Qv~~~~~~~~~~~--~~~v~~~~gg~~~~~~~~---~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah 271 (620)
+|+.|+++.+..++... ++.+..++|+.+...+.. .+.. .++|+|+||++|.+++... . ..+++++|+||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECce
Confidence 99999999999988764 467788899988776543 3444 4999999999999887642 2 2679999999999
Q ss_pred hhhh-----------cCcHHHHHH----HHH----------------------hccccCCce-EEeecCCCChHHHHHHH
Q 007044 272 EMLR-----------MGFVEDVEL----ILG----------------------KVEDANKVQ-TLLFSATLPSWVKHIST 313 (620)
Q Consensus 272 ~~l~-----------~~f~~~l~~----il~----------------------~~~~~~~~q-~ll~SATl~~~~~~~~~ 313 (620)
+|++ +||.+++.. |+. .++. .+| +++||||++... ...
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ll~~SAT~~~r~-~~~- 286 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGN--KIGCLIVASATGKAKG-DRV- 286 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCC--CccEEEEEecCCCchh-HHH-
Confidence 9986 589888864 432 1222 345 677999998631 111
Q ss_pred HhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccH---HHHHHhcc----cc
Q 007044 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESA---SQLADLLP----GA 386 (620)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~---~~l~~~l~----~~ 386 (620)
.++ ..+..+.+.. ......++.+.++.+....+ ..+..++... +..+||||+|+..+ +.++..|. .+
T Consensus 287 ~l~-~~~l~f~v~~--~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a 360 (1638)
T PRK14701 287 KLY-RELLGFEVGS--GRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKI 360 (1638)
T ss_pred HHh-hcCeEEEecC--CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeE
Confidence 222 2333344322 23455678888877655544 4666777665 46899999998864 88898887 56
Q ss_pred hhhccccchHHHHHHHHHhhcCCceEEEec----ccccccCCCCC-ccEEEEcCCCC---CHHHHHHHh-----------
Q 007044 387 RALHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPPR---DVEAYIHRS----------- 447 (620)
Q Consensus 387 ~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT----dv~~rGlDi~~-v~~VI~~d~P~---s~~~yiqr~----------- 447 (620)
..+||+ |..++++|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 361 ~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~ 435 (1638)
T PRK14701 361 ELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEIL 435 (1638)
T ss_pred EEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHH
Confidence 789985 8899999999999999999 59999999999 99999999999 888887766
Q ss_pred --cccccCCCccEEEEEeCCC-chHHH
Q 007044 448 --GRTGRAGNTGVAVMLYDPR-KSSVS 471 (620)
Q Consensus 448 --GRtgR~g~~G~~i~l~~~~-~~~~~ 471 (620)
||+||.|.++.+++.+.+. ...++
T Consensus 436 ~~~~a~~~g~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 436 KIEEELKEGIPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred HhhhhcccCCcchhHHHhHHHHHHHHH
Confidence 9999999888887555544 33343
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2e-38 Score=350.28 Aligned_cols=321 Identities=17% Similarity=0.248 Sum_probs=234.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|..+++.++.|+ |+.++||+|||++|++|++.....+. +++|++||++||.|.++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~-------------~v~VvTpt~~LA~qd~e~ 138 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK-------------GVHLITVNDYLAKRDAEE 138 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC-------------CeEEEeCCHHHHHHHHHH
Confidence 476 99999999999999887 99999999999999999986665543 499999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhhh----
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l~---- 275 (620)
+..+...+|+++++++||.+...+.+ ...++||+||||++| .|+|... ...++.+.++|+||||.|+=
T Consensus 139 ~~~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 139 MGQVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 99999999999999999998544433 335699999999999 5655432 23568899999999999861
Q ss_pred ------------cCcHHHHHHHHHhcccc------CCc------------------------------------------
Q 007044 276 ------------MGFVEDVELILGKVEDA------NKV------------------------------------------ 295 (620)
Q Consensus 276 ------------~~f~~~l~~il~~~~~~------~~~------------------------------------------ 295 (620)
..++..+..+...+... ...
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 11333333444433211 001
Q ss_pred -------------------------------------------------------------------eEEeecCCCChHH
Q 007044 296 -------------------------------------------------------------------QTLLFSATLPSWV 308 (620)
Q Consensus 296 -------------------------------------------------------------------q~ll~SATl~~~~ 308 (620)
.+.+||+|....-
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 1222222221111
Q ss_pred HHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHh-cCCCCeEEEEEcccccHHHHHHhcc---
Q 007044 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP--- 384 (620)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~--- 384 (620)
.++.+.|- -..+.+ +...+........ .+.+....+...+...+.. ...+.++||||+|+..++.++..|.
T Consensus 378 ~e~~~~Y~---l~v~~I-Pt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g 452 (790)
T PRK09200 378 KEFFEVYN---MEVVQI-PTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG 452 (790)
T ss_pred HHHHHHhC---CcEEEC-CCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 11111110 111111 1111111111111 1223445666777666654 3467899999999999999999997
Q ss_pred -cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCC---CCcc-----EEEEcCCCCCHHHHHHHhcccccCCC
Q 007044 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI---NDVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGN 455 (620)
Q Consensus 385 -~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi---~~v~-----~VI~~d~P~s~~~yiqr~GRtgR~g~ 455 (620)
.+..+||++.+.++..+...++.| +|+||||+++||+|| |+|. |||+|++|.+...|+||+|||||.|.
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGD 530 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCC
Confidence 567899999999998888888877 799999999999999 6998 99999999999999999999999999
Q ss_pred ccEEEEEeCCCchHHH
Q 007044 456 TGVAVMLYDPRKSSVS 471 (620)
Q Consensus 456 ~G~~i~l~~~~~~~~~ 471 (620)
+|.|++|++.....++
T Consensus 531 ~G~s~~~is~eD~l~~ 546 (790)
T PRK09200 531 PGSSQFFISLEDDLLK 546 (790)
T ss_pred CeeEEEEEcchHHHHH
Confidence 9999999998744443
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.8e-39 Score=336.14 Aligned_cols=296 Identities=22% Similarity=0.244 Sum_probs=209.5
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcch
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~ 227 (620)
|++++||||||||++|++|++..+... ...+++|++|+++|+.|+++.+..++.. .++.++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 689999999999999999999887543 2346999999999999999999887432 33444443321
Q ss_pred HH------------HHHHh------cCCCcEEEeChHHHHHHHhcCC----ccCC--CccEEEeccchhhhhcCcHHHHH
Q 007044 228 HA------------QEFKL------KKGIDVVIGTPGRIKDHIERGN----IDLS--SLKFRVLDEADEMLRMGFVEDVE 283 (620)
Q Consensus 228 ~~------------~~~~l------~~~~~IlV~Tp~rl~~~l~~~~----~~l~--~l~~lVlDEah~~l~~~f~~~l~ 283 (620)
.. ..... ....+|+|+||++++..+.++. +.+. ..++||+||||.+.+.++.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 10 00011 1236899999999988876521 1111 23789999999998765443 66
Q ss_pred HHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe--CCchhhhhhHHHHHHhcC
Q 007044 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP--CSSSARSQVIPDIIRCYS 361 (620)
Q Consensus 284 ~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~ll~~~~ 361 (620)
.++..+.. .+.|+++||||+|..+..+...+.. .......... .......+.+.. .....+...+..++....
T Consensus 146 ~~l~~l~~-~~~~~i~~SATlp~~l~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 146 AVLEVLKD-NDVPILLMSATLPKFLKEYAEKIGY-VEFNEPLDLK---EERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHH-cCCCEEEEecCchHHHHHHHhcCCC-cccccCCCCc---cccccccccceeeccccccCHHHHHHHHHHhh
Confidence 66666652 2579999999999877666555431 1111100000 000011222211 122344566777777666
Q ss_pred CCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHH----HHHHhhcCCceEEEecccccccCCCCCccEE
Q 007044 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREV----TLAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~----~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~V 431 (620)
.++++||||+|++.++.++..|. .+..+||++++.+|.+ +++.|++|+.+|||||+++++|||++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 77899999999999999999885 2678999999999976 48999999999999999999999995 8999
Q ss_pred EEcCCCCCHHHHHHHhcccccCCCcc----EEEEEeCCC
Q 007044 432 IQCEPPRDVEAYIHRSGRTGRAGNTG----VAVMLYDPR 466 (620)
Q Consensus 432 I~~d~P~s~~~yiqr~GRtgR~g~~G----~~i~l~~~~ 466 (620)
|++..| ..+|+||+||+||.|+.+ .++++....
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999877 789999999999998743 555555433
No 64
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.4e-38 Score=341.30 Aligned_cols=320 Identities=19% Similarity=0.243 Sum_probs=229.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|..+.+.++.|+ |+.++||+|||++|++|++.....+. +++|++||++||.|.+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~VvTpt~~LA~qdae~ 116 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-------------GVHVVTVNDYLAQRDAEW 116 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-------------CEEEEcCCHHHHHHHHHH
Confidence 455 89999999999988877 99999999999999999964444332 399999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhhhc---
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLRM--- 276 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l~~--- 276 (620)
+..+...+|+++++++||.+...+... ..++|+||||++| .|++..+ .+.++.+.++|+||+|+|+-.
T Consensus 117 ~~~l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaR 194 (745)
T TIGR00963 117 MGQVYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEAR 194 (745)
T ss_pred HHHHhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhh
Confidence 999999999999999999886544433 3589999999999 9998765 356789999999999998731
Q ss_pred ------C-------cHHHHHHHHHhcccc-------CC------------------------------------------
Q 007044 277 ------G-------FVEDVELILGKVEDA-------NK------------------------------------------ 294 (620)
Q Consensus 277 ------~-------f~~~l~~il~~~~~~-------~~------------------------------------------ 294 (620)
| .+.....|...+... ..
T Consensus 195 tpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 195 TPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 1 111112222222110 00
Q ss_pred ------------------------------------------------------------------ceEEeecCCCChHH
Q 007044 295 ------------------------------------------------------------------VQTLLFSATLPSWV 308 (620)
Q Consensus 295 ------------------------------------------------------------------~q~ll~SATl~~~~ 308 (620)
..+.+||+|.....
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 354 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH
Confidence 11122222222111
Q ss_pred HHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhH-HHHHHhcCCCCeEEEEEcccccHHHHHHhcc---
Q 007044 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI-PDIIRCYSSGGRTIIFTETKESASQLADLLP--- 384 (620)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--- 384 (620)
..+...|- -.++.+.. ..+.........++. ....+...+ ..+...+..+.++||||+|+..++.++..|.
T Consensus 355 ~E~~~iY~---l~vv~IPt-nkp~~R~d~~d~i~~-t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 355 EEFEKIYN---LEVVVVPT-NRPVIRKDLSDLVYK-TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred HHHHHHhC---CCEEEeCC-CCCeeeeeCCCeEEc-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 11111110 00111100 000000011111111 123344444 4455566788999999999999999999997
Q ss_pred -cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCC-------ccEEEEcCCCCCHHHHHHHhcccccCCCc
Q 007044 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND-------VQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456 (620)
Q Consensus 385 -~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~-------v~~VI~~d~P~s~~~yiqr~GRtgR~g~~ 456 (620)
....+||+ +.+|+..+..|+.+...|+||||+|+||+||+. ..|||++++|.|...|.||.|||||.|.+
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 45678888 889999999999999999999999999999998 55999999999999999999999999999
Q ss_pred cEEEEEeCCCchHHH
Q 007044 457 GVAVMLYDPRKSSVS 471 (620)
Q Consensus 457 G~~i~l~~~~~~~~~ 471 (620)
|.+.+|++.....++
T Consensus 508 G~s~~~ls~eD~l~~ 522 (745)
T TIGR00963 508 GSSRFFLSLEDNLMR 522 (745)
T ss_pred cceEEEEeccHHHHH
Confidence 999999998844443
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.9e-37 Score=339.22 Aligned_cols=320 Identities=18% Similarity=0.226 Sum_probs=223.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|..+...+..| .|+.++||+|||++|++|++.....+. .++|++||++||.|++++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~-------------~V~VVTpn~yLA~Rdae~ 130 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGK-------------GAMLVTTNDYLAKRDAEE 130 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCC-------------ceEEeCCCHHHHHHHHHH
Confidence 355 5666666655555555 799999999999999999887666542 399999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcc---hHHHHHHhcCCCcEEEeChHHH-HHHHhc------CCccCCCccEEEeccchhhhhc
Q 007044 207 FDVYGGAVGLTSCCLYGGAP---YHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEMLRM 276 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~---~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~------~~~~l~~l~~lVlDEah~~l~~ 276 (620)
+..+...+|+++.+++++.. ...+.+....+++|++|||++| .+++.. ....++.+.++|+||||.||-.
T Consensus 131 m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD 210 (762)
T TIGR03714 131 MGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD 210 (762)
T ss_pred HHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc
Confidence 99999999999998887632 3333444556899999999999 565532 2345788999999999998621
Q ss_pred ----------------CcHHHHHHHHHhccccC------C----------------------------------------
Q 007044 277 ----------------GFVEDVELILGKVEDAN------K---------------------------------------- 294 (620)
Q Consensus 277 ----------------~f~~~l~~il~~~~~~~------~---------------------------------------- 294 (620)
.++..+..+...+.... +
T Consensus 211 eartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~ 290 (762)
T TIGR03714 211 SAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALR 290 (762)
T ss_pred cCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHH
Confidence 12233333443332210 0
Q ss_pred ---------------------------------------------------------------------ceEEeecCCCC
Q 007044 295 ---------------------------------------------------------------------VQTLLFSATLP 305 (620)
Q Consensus 295 ---------------------------------------------------------------------~q~ll~SATl~ 305 (620)
..+.+||+|..
T Consensus 291 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 370 (762)
T TIGR03714 291 AHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK 370 (762)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh
Confidence 12222233322
Q ss_pred hHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHH-hcCCCCeEEEEEcccccHHHHHHhcc
Q 007044 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP 384 (620)
Q Consensus 306 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~ 384 (620)
....++.+.|- -.++.+.. ..+......... +.+....|...+...+. ....+.++||||+|+..++.++..|.
T Consensus 371 ~~~~Ef~~iY~---l~v~~IPt-~kp~~r~d~~d~-i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~ 445 (762)
T TIGR03714 371 VAEKEFIETYS---LSVVKIPT-NKPIIRIDYPDK-IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLL 445 (762)
T ss_pred hHHHHHHHHhC---CCEEEcCC-CCCeeeeeCCCe-EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHH
Confidence 22222221110 11111110 001111111111 22334456666655554 44577899999999999999999987
Q ss_pred ----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC---------CccEEEEcCCCCCHHHHHHHhcccc
Q 007044 385 ----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---------DVQLIIQCEPPRDVEAYIHRSGRTG 451 (620)
Q Consensus 385 ----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~---------~v~~VI~~d~P~s~~~yiqr~GRtg 451 (620)
.+..+||++.+.+|..+..+|+.| .|+||||+++||+||+ ++.+|++|++|..... +||+||||
T Consensus 446 ~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtG 522 (762)
T TIGR03714 446 REGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSG 522 (762)
T ss_pred HCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhccc
Confidence 567899999999998888888888 7999999999999999 9999999999998777 99999999
Q ss_pred cCCCccEEEEEeCCCchHH
Q 007044 452 RAGNTGVAVMLYDPRKSSV 470 (620)
Q Consensus 452 R~g~~G~~i~l~~~~~~~~ 470 (620)
|.|.+|.+++|++.....+
T Consensus 523 RqG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 523 RQGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred CCCCceeEEEEEccchhhh
Confidence 9999999999999874444
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.6e-37 Score=338.25 Aligned_cols=307 Identities=17% Similarity=0.165 Sum_probs=219.1
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
...|+++|.++++.++.+++.++++|||+|||+++...+...+.. ...++|||+||++|+.|+.+.|.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~------------~~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN------------YEGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc------------CCCeEEEEECcHHHHHHHHHHHH
Confidence 458999999999999999999999999999999765433222222 12369999999999999999999
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
.++......+..+++|.... .+.+|+|+||+++.+... ..+.++++||+||||++.. ..+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHh
Confidence 88755445566677775432 358999999999976542 2468899999999999974 345677777
Q ss_pred ccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcc----cccccceEEEEE---------------------e
Q 007044 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK----MKASTNVRHIVL---------------------P 343 (620)
Q Consensus 289 ~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~~~---------------------~ 343 (620)
++. .+++++||||++.........+..-.+....+..... ......+..... .
T Consensus 246 ~~~--~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 323 (501)
T PHA02558 246 LDN--CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYI 323 (501)
T ss_pred hhc--cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHH
Confidence 754 4689999999865322111100000111111100000 000000000000 1
Q ss_pred CCchhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEec-c
Q 007044 344 CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT-N 417 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT-d 417 (620)
.....+...+..++... ..+.++||||++.+.++.|++.|. .+..+||++++.+|..+++.|++|...||||| +
T Consensus 324 ~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~ 403 (501)
T PHA02558 324 TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYG 403 (501)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 11222333444444332 356789999999999999999987 67789999999999999999999999999999 9
Q ss_pred cccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEe
Q 007044 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~ 463 (620)
++++|+|+|++++||++++|.+...|+||+||++|.+..+...+++
T Consensus 404 ~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 404 VFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999999999999999999999997654433333
No 67
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=342.20 Aligned_cols=334 Identities=23% Similarity=0.336 Sum_probs=260.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 007044 115 RISVPLREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (620)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (620)
.+.+.+.+.+...|+.+++|.|+.++...+ .++|+|+++|||||||+.+.+.+++.+..+. .+++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------------~k~vYi 82 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG------------GKVVYI 82 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------------CcEEEE
Confidence 478888999999999999999999997754 6699999999999999999999999998752 249999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
||+|+||.+++++|.++ ...|++|...+|+...... ...+++|+|+||+++...+++...++..+++||+||+|.+
T Consensus 83 vPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 83 VPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred eChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 99999999999999944 4579999999999875542 2346999999999999888887778999999999999998
Q ss_pred hhcCcHHHHHHHHHhccccC-CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC------Cc
Q 007044 274 LRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC------SS 346 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~-~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~------~~ 346 (620)
.+...+..++.|...+.... ..|++.+|||+|+. .+++ .|++.....................+++... +.
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA-~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~ 236 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVA-DWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPL 236 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHH-HHhCCcccccCCCCcccccCCccceEEEEecCccccccc
Confidence 87767788888887776533 36999999999983 3333 3442222211111111111111222222211 11
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-----------------------------------------c
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----------------------------------------G 385 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-----------------------------------------~ 385 (620)
......+..++.....++++||||+|++.+...+..+. .
T Consensus 237 ~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~G 316 (766)
T COG1204 237 LIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRG 316 (766)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhC
Confidence 23356677777888899999999999998877766553 3
Q ss_pred chhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cC-----CCCCHHHHHHHhcccccCCC-
Q 007044 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-----PPRDVEAYIHRSGRTGRAGN- 455 (620)
Q Consensus 386 ~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d-----~P~s~~~yiqr~GRtgR~g~- 455 (620)
+..+|++|+..+|.-+.+.|+.|.++||+||.++|.|+|+|.-.+||- |+ .+.+..+|+|++|||||.|-
T Consensus 317 vafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 317 VAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred ccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC
Confidence 456899999999999999999999999999999999999998877773 77 67789999999999999986
Q ss_pred -ccEEEEEeCCC
Q 007044 456 -TGVAVMLYDPR 466 (620)
Q Consensus 456 -~G~~i~l~~~~ 466 (620)
.|.++++.+..
T Consensus 397 ~~G~~~i~~~~~ 408 (766)
T COG1204 397 DYGEAIILATSH 408 (766)
T ss_pred CCCcEEEEecCc
Confidence 57777777433
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=313.92 Aligned_cols=341 Identities=25% Similarity=0.351 Sum_probs=272.4
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
.+...++++++++.+.+.|+..|++.+.|+|..++.. +++|.|.++.++|+||||+..-+.-+..+..+..
T Consensus 191 ~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~-------- 262 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK-------- 262 (830)
T ss_pred cccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--------
Confidence 3446788999999999999999999999999999988 7899999999999999999988888877776432
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHH----HHhcCCCcEEEeChHHHHHHHhcCCccCC
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE----FKLKKGIDVVIGTPGRIKDHIERGNIDLS 260 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~----~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~ 260 (620)
+.|+|+|..+||+|-+++|..-...+++.+..-.|-..+.... ......+||||||++-+-.+|+.+ -++.
T Consensus 263 ----KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lg 337 (830)
T COG1202 263 ----KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLG 337 (830)
T ss_pred ----eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Cccc
Confidence 4899999999999999999866677888888777765443322 122346899999999997777776 6799
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhcccc-CCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEE
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~-~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 339 (620)
++..||+||+|.+-+...+..+.-++..+... +..|.+.+|||..++- .+++.+- ...+... ..+.+--.|
T Consensus 338 diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~---a~lV~y~----~RPVplErH 409 (830)
T COG1202 338 DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLG---AKLVLYD----ERPVPLERH 409 (830)
T ss_pred ccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhC---CeeEeec----CCCCChhHe
Confidence 99999999999887655555555555444321 2589999999998753 4555442 2222221 123333456
Q ss_pred EEEeCCchhhhhhHHHHHHhc-------CCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcC
Q 007044 340 IVLPCSSSARSQVIPDIIRCY-------SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408 (620)
Q Consensus 340 ~~~~~~~~~~~~~l~~ll~~~-------~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g 408 (620)
+.+.-....|.+.+..+.+.. ...|++|||++|++.|+.|+..|. .+.++|++|+..+|..+...|.++
T Consensus 410 lvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q 489 (830)
T COG1202 410 LVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ 489 (830)
T ss_pred eeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC
Confidence 666666888888888887643 234799999999999999999998 788999999999999999999999
Q ss_pred CceEEEecccccccCCCCCccEEEE---cCC-CCCHHHHHHHhcccccCCC--ccEEEEEeCCCc
Q 007044 409 KFMTLVATNVAARGLDINDVQLIIQ---CEP-PRDVEAYIHRSGRTGRAGN--TGVAVMLYDPRK 467 (620)
Q Consensus 409 ~~~vLvaTdv~~rGlDi~~v~~VI~---~d~-P~s~~~yiqr~GRtgR~g~--~G~~i~l~~~~~ 467 (620)
.+.++|+|-+++.|+|+|.-.+++- .+. .-++..|.|++|||||.+. .|.+++++.|..
T Consensus 490 ~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 490 ELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred CcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 9999999999999999997655432 233 3489999999999999986 799999999983
No 69
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-36 Score=305.61 Aligned_cols=321 Identities=24% Similarity=0.283 Sum_probs=235.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
+..+++.+|......++.+ +.+++.|||-|||+.+++.+..++.... + ++|+++||+-|+.|.+..|
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-----------~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-----------G-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-----------C-eEEEecCCchHHHHHHHHH
Confidence 3457889999988887765 8999999999999999999998887643 2 5999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHH-HHHH
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV-ELIL 286 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l-~~il 286 (620)
.++..-..-.++.++|..+..... ..+...+|+|+||+.+.+-|..|.+++.++.++|+||||+-....-+-.+ ...+
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~-~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEERE-ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHH-HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 998776667888999998877544 34456899999999999999999999999999999999996432222222 2233
Q ss_pred HhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCccccccc---ceEEEEEeC-------------------
Q 007044 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST---NVRHIVLPC------------------- 344 (620)
Q Consensus 287 ~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~i~~~~~~~------------------- 344 (620)
.. ..++.++.+|||.......+..-.-+-....|.+.......... .++..++.+
T Consensus 158 ~~---~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 158 RS---AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred Hh---ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 32 22678999999977654444332211111111111111000000 000000000
Q ss_pred ----------------------------------C-c-------------------------------------------
Q 007044 345 ----------------------------------S-S------------------------------------------- 346 (620)
Q Consensus 345 ----------------------------------~-~------------------------------------------- 346 (620)
. .
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 0 0
Q ss_pred --------------------------------hhhhhhHHHHHHhc---CCCCeEEEEEcccccHHHHHHhccc----ch
Q 007044 347 --------------------------------SARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLPG----AR 387 (620)
Q Consensus 347 --------------------------------~~~~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~ 387 (620)
..|+..+..++... ..+.++|||++.+++|+.+.+.|.. +.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 01111222222211 1335899999999999999999972 21
Q ss_pred ---------hhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccE
Q 007044 388 ---------ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458 (620)
Q Consensus 388 ---------~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~ 458 (620)
....+|+|.++..+++.|+.|.++|||||++++.|||||.|++||.|++-.|...++||.|||||. +.|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 123679999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred EEEEeCCC
Q 007044 459 AVMLYDPR 466 (620)
Q Consensus 459 ~i~l~~~~ 466 (620)
+++|+...
T Consensus 474 v~vLvt~g 481 (542)
T COG1111 474 VVVLVTEG 481 (542)
T ss_pred EEEEEecC
Confidence 99988877
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.6e-36 Score=347.33 Aligned_cols=294 Identities=21% Similarity=0.330 Sum_probs=211.0
Q ss_pred HHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc----cHHHHHHHHHHHHH-
Q 007044 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP----TRELAKQVHEDFDV- 209 (620)
Q Consensus 135 ~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P----treLa~Qv~~~~~~- 209 (620)
.-.+.+..+..++.+|++|+||||||+ .+|.+..-... +....+++..| +++||.||++++..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----------g~~g~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----------GVKGLIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----------CCCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 344556667777889999999999999 57744222111 01112445556 56999999999874
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccch-hhhhcCcHHH-HHHHHH
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVED-VELILG 287 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah-~~l~~~f~~~-l~~il~ 287 (620)
++...|+.+ .+.. ....+++|+|+|||+|++++..+.+ ++++++||||||| ++++.+|... +..+
T Consensus 146 lG~~VGY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~l-- 212 (1294)
T PRK11131 146 LGGCVGYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKEL-- 212 (1294)
T ss_pred hcceeceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHh--
Confidence 555444433 1111 1235699999999999999987654 9999999999999 5889888743 3333
Q ss_pred hccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchh---hhhhHHHHHHh-----
Q 007044 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA---RSQVIPDIIRC----- 359 (620)
Q Consensus 288 ~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~l~~ll~~----- 359 (620)
++..++.|+|+||||++. ..+.+.|. +...+.+.+.. ..+.+.|.+..... +.+.+..++..
T Consensus 213 -L~~rpdlKvILmSATid~--e~fs~~F~--~apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 213 -LPRRPDLKVIITSATIDP--ERFSRHFN--NAPIIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG 282 (1294)
T ss_pred -hhcCCCceEEEeeCCCCH--HHHHHHcC--CCCEEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHh
Confidence 333336899999999975 35555554 33455554321 23555665543321 12333333221
Q ss_pred cCCCCeEEEEEcccccHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE
Q 007044 360 YSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432 (620)
Q Consensus 360 ~~~~~~~iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI 432 (620)
....+.+|||+++..+++.+++.|. .+..+||+|++.+|.++++. .|..+||||||++++|||||+|++||
T Consensus 283 ~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 283 REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEE
Confidence 1345789999999999999999986 24579999999999999886 47889999999999999999999999
Q ss_pred EcC---------------CC---CCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 433 QCE---------------PP---RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 433 ~~d---------------~P---~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
++| +| .|.++|.||+|||||. ++|.||.||++.
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 986 34 4568999999999999 799999999976
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.2e-35 Score=335.85 Aligned_cols=319 Identities=24% Similarity=0.301 Sum_probs=232.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
+..+|+++|.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------------~~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------------KGGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------------CCCeEEEEeCcHHHHHHHHHHH
Confidence 4568999999999988877 99999999999999999999888742 2336999999999999999999
Q ss_pred HHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHH
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~ 287 (620)
..+....+..+..++|+.+... ...+..+.+|+|+||+.+...+..+.+.+.++++||+||||++........+...+.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 9876544567888888877654 344556789999999999988888888899999999999999875443333444333
Q ss_pred hccccCCceEEeecCCCChHH---HHHHHHhcccCCcEEEEecCcc----------------------------------
Q 007044 288 KVEDANKVQTLLFSATLPSWV---KHISTKFLKSDKKTIDLVGNEK---------------------------------- 330 (620)
Q Consensus 288 ~~~~~~~~q~ll~SATl~~~~---~~~~~~~~~~~~~~i~~~~~~~---------------------------------- 330 (620)
.... .+++++||||..... ..+..... ...+.+.....
T Consensus 158 ~~~~--~~~il~lTaTP~~~~~~i~~~~~~L~---i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~ 232 (773)
T PRK13766 158 EDAK--NPLVLGLTASPGSDEEKIKEVCENLG---IEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEAL 232 (773)
T ss_pred hcCC--CCEEEEEEcCCCCCHHHHHHHHHhCC---ceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHH
Confidence 3332 568999999963221 11111110 00000000000
Q ss_pred ----------ccc---c------------cceEEEE--------------------------------------------
Q 007044 331 ----------MKA---S------------TNVRHIV-------------------------------------------- 341 (620)
Q Consensus 331 ----------~~~---~------------~~i~~~~-------------------------------------------- 341 (620)
... . ..+....
T Consensus 233 ~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~ 312 (773)
T PRK13766 233 KDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLRE 312 (773)
T ss_pred HHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 000 0 0000000
Q ss_pred ----------------------------EeCCchhhhhhHHHHHHhc---CCCCeEEEEEcccccHHHHHHhcc----cc
Q 007044 342 ----------------------------LPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GA 386 (620)
Q Consensus 342 ----------------------------~~~~~~~~~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~----~~ 386 (620)
.......|...|..++... ..+.++||||++++.++.|+..|. .+
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~ 392 (773)
T PRK13766 313 EARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKA 392 (773)
T ss_pred hccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCce
Confidence 0001122334445555432 366899999999999999999985 34
Q ss_pred hhhccc--------cchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccE
Q 007044 387 RALHGD--------IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458 (620)
Q Consensus 387 ~~lh~~--------l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~ 458 (620)
..+||. |++.+|..++++|++|.+++||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.
T Consensus 393 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~ 471 (773)
T PRK13766 393 VRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GR 471 (773)
T ss_pred EEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CE
Confidence 456664 999999999999999999999999999999999999999999999999999999999999864 88
Q ss_pred EEEEeCCC
Q 007044 459 AVMLYDPR 466 (620)
Q Consensus 459 ~i~l~~~~ 466 (620)
+++|+...
T Consensus 472 v~~l~~~~ 479 (773)
T PRK13766 472 VVVLIAKG 479 (773)
T ss_pred EEEEEeCC
Confidence 88887765
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.7e-35 Score=304.21 Aligned_cols=289 Identities=19% Similarity=0.233 Sum_probs=198.5
Q ss_pred HHHHHHHHHHcCCc--EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhc
Q 007044 135 IQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (620)
Q Consensus 135 ~Q~~~i~~il~g~d--vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (620)
+|.++++.+.++.+ ++++||||||||++|++|++.. . .+++|++|+++|+.|+++.+..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---~-------------~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---E-------------NDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---C-------------CCEEEEeChHHHHHHHHHHHHHHHH
Confidence 49999999998874 7899999999999999999841 1 1389999999999999999887763
Q ss_pred C----CCceEEEEeCCcchHH--HH------------------HHhcCCCcEEEeChHHHHHHHhcC-----Cc---cCC
Q 007044 213 A----VGLTSCCLYGGAPYHA--QE------------------FKLKKGIDVVIGTPGRIKDHIERG-----NI---DLS 260 (620)
Q Consensus 213 ~----~~~~v~~~~gg~~~~~--~~------------------~~l~~~~~IlV~Tp~rl~~~l~~~-----~~---~l~ 260 (620)
. .++.+..+.|....+. .. ......++|+++||+.|..++.+. .. .+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 2 3566666666532220 00 011246889999999997655431 11 257
Q ss_pred CccEEEeccchhhhhcC-----cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcc-----
Q 007044 261 SLKFRVLDEADEMLRMG-----FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK----- 330 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~-----f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~----- 330 (620)
++++||+||+|.+...+ +.-....++..... ..+++++|||+++.+..............+.+.+...
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC--RRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN 222 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc--CCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC
Confidence 89999999999976433 11223333333332 4699999999999876666544111111222111100
Q ss_pred ------------cccccceEEEEEeCCchhhhhhHHHHHH----hc--CCCCeEEEEEcccccHHHHHHhccc------c
Q 007044 331 ------------MKASTNVRHIVLPCSSSARSQVIPDIIR----CY--SSGGRTIIFTETKESASQLADLLPG------A 386 (620)
Q Consensus 331 ------------~~~~~~i~~~~~~~~~~~~~~~l~~ll~----~~--~~~~~~iVF~~t~~~~~~l~~~l~~------~ 386 (620)
......+.+.+.. ....+...+..++. .. ..++++||||+|+..++.++..|.. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~ 301 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDI 301 (357)
T ss_pred hhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceE
Confidence 0011245555554 33333333333332 22 2567999999999999999999972 4
Q ss_pred hhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccc
Q 007044 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (620)
Q Consensus 387 ~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtg 451 (620)
..+||.+++.+|.++ ++..|||||++++||||++.+ +|| ++ |.+.++|+||+||||
T Consensus 302 ~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 302 GRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 578999999998765 378999999999999999987 666 55 899999999999997
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=326.59 Aligned_cols=334 Identities=22% Similarity=0.343 Sum_probs=263.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (620)
....+..+|.+.|+..|+++|.+|+..+.+|+|+||+.+||||||.+|++||++++...+.. ++|+|.|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 34556888999999999999999999999999999999999999999999999999987542 5899999
Q ss_pred cHHHHHHHHHHHHHhhcCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC----CccCCCccEEEecc
Q 007044 196 TRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSLKFRVLDE 269 (620)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~----~~~l~~l~~lVlDE 269 (620)
|++||+.+.+.|.++....+ +++..+.|.+..........+.++||++||.+|..++.+. .+.++++++||+||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999999887766 8888888888877776777889999999999998866543 23467899999999
Q ss_pred chhhhhcCcHHHHHHHHHhccc-----cCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC
Q 007044 270 ADEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (620)
Q Consensus 270 ah~~l~~~f~~~l~~il~~~~~-----~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (620)
+|-. .-.|+.++..+++.+.. ..++|+++.|||+.+.- .++..+...+.... +. .. .......+++...
T Consensus 204 lHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~-v~-~~--g~~~~~~~~~~~~ 277 (851)
T COG1205 204 LHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVP-VD-ED--GSPRGLRYFVRRE 277 (851)
T ss_pred ceec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceee-cc-CC--CCCCCceEEEEeC
Confidence 9987 55577777777665532 13689999999998754 44555553333331 22 11 2222333333332
Q ss_pred C---------chhhhhhHHHHHH-hcCCCCeEEEEEcccccHHHHHHhcc------------cchhhccccchHHHHHHH
Q 007044 345 S---------SSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTL 402 (620)
Q Consensus 345 ~---------~~~~~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~------------~~~~lh~~l~~~~R~~~~ 402 (620)
+ .......+..++. ....+-++|+|+.++..++.+..... .+..++|+|...+|.++.
T Consensus 278 p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 278 PPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIE 357 (851)
T ss_pred CcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHH
Confidence 2 1122223333332 22366899999999999998862221 466789999999999999
Q ss_pred HHhhcCCceEEEecccccccCCCCCccEEEEcCCCC-CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 403 ~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~-s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
..|+.|+..++++|+++.-||||.+++.||+++.|. +..+|+||.||+||.++.+..+.++..+
T Consensus 358 ~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 358 AEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999 8999999999999999888887777755
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-33 Score=317.14 Aligned_cols=330 Identities=23% Similarity=0.277 Sum_probs=257.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
......|...++|-|.++|..++.|+|+++..|||.||+++|.||++ +..+ -.|||.|..+|..
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--l~~g--------------itvVISPL~SLm~ 318 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--LLGG--------------VTVVISPLISLMQ 318 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--ccCC--------------ceEEeccHHHHHH
Confidence 34456799999999999999999999999999999999999999987 3322 3799999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchHHHHH---HhcC---CCcEEEeChHHHHHHH--hcCCccCCC---ccEEEeccc
Q 007044 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK---GIDVVIGTPGRIKDHI--ERGNIDLSS---LKFRVLDEA 270 (620)
Q Consensus 202 Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~---~~~IlV~Tp~rl~~~l--~~~~~~l~~---l~~lVlDEa 270 (620)
.+...+. ..++....+.++.....+.. .+.. .++|+..||+.+...- .+....+.. +.++|+|||
T Consensus 319 DQv~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 319 DQVTHLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 7766663 35688888988887754432 2222 5899999999985532 222223444 889999999
Q ss_pred hhhhhcC--cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchh
Q 007044 271 DEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (620)
Q Consensus 271 h~~l~~~--f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 348 (620)
|+...|| |++++..+.......+...++.+|||.+..+..-+-..+.-....+.. ......|+..-+..-....
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~----~sfnR~NL~yeV~~k~~~~ 470 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK----SSFNRPNLKYEVSPKTDKD 470 (941)
T ss_pred HHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec----ccCCCCCceEEEEeccCcc
Confidence 9999998 888888776655555567899999999888766665555322222211 1123344444333333233
Q ss_pred hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCC
Q 007044 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424 (620)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlD 424 (620)
....+...+....++..+||||.++.+|+.++..|. .+..+|++|+..+|..+...|..++++|+|||=++++|||
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 334444445555578899999999999999999998 6779999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHH
Q 007044 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (620)
Q Consensus 425 i~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (620)
.|+|+.||||.+|.+.+.|+|-+|||||.|....|++||+.. ...++.+..
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 444544443
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-34 Score=280.81 Aligned_cols=330 Identities=22% Similarity=0.279 Sum_probs=242.0
Q ss_pred HHHHHHHHC-CCCCC-cHHHHHHHHHHHc-CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc
Q 007044 119 PLREKLKSK-GIESL-FPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (620)
Q Consensus 119 ~l~~~l~~~-g~~~~-~~~Q~~~i~~il~-g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (620)
.+.++|++. |+..+ ++.|.+++..+.. .+||.|+.|||+||+++|.||.|.+ .+ ..||++|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--~g--------------ITIV~SP 69 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--GG--------------ITIVISP 69 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--CC--------------eEEEehH
Confidence 456677664 66544 7999999999875 5899999999999999999999842 22 3799999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH------hcCCCcEEEeChHHHHHH----HhcCCccCCCccEE
Q 007044 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK------LKKGIDVVIGTPGRIKDH----IERGNIDLSSLKFR 265 (620)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~------l~~~~~IlV~Tp~rl~~~----l~~~~~~l~~l~~l 265 (620)
..+|.....+.+.++- +.+..+....+.....+. .+....++.-||+.-..- +.++..+-..+.|+
T Consensus 70 LiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 70 LIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 9999998888887653 445555555444333222 234678999999865221 22223334568999
Q ss_pred EeccchhhhhcC--cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcc-cCCcEEEEecCcccccccceEEEEE
Q 007044 266 VLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK-SDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 266 VlDEah~~l~~~--f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
|+||||+...|| |++++..+-......+....+.++||-+..+.+-.-.-++ ..|..+.- ++.--..+++
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-------TP~FR~NLFY 218 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-------TPTFRDNLFY 218 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc-------CcchhhhhhH
Confidence 999999999998 8888877655444444678999999998887665444332 22332211 1111111221
Q ss_pred eCC----chhhhhhHHHHHH-hcC-----------CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHH
Q 007044 343 PCS----SSARSQVIPDIIR-CYS-----------SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402 (620)
Q Consensus 343 ~~~----~~~~~~~l~~ll~-~~~-----------~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~ 402 (620)
... -++....|.++-. .+. ..|..||||+|++.+++++-.|. .+..+|+++...+|..+.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 111 1122223333322 111 23678999999999999998887 677899999999999999
Q ss_pred HHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHH
Q 007044 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (620)
Q Consensus 403 ~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (620)
+.|.++++.|++||..+++|+|-|+|++|||+++|.+...|.|.+||+||.|....|-++|+.. ...++.+.+
T Consensus 299 e~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 299 EKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred HHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999988 666665543
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4e-33 Score=299.27 Aligned_cols=322 Identities=25% Similarity=0.320 Sum_probs=227.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
+...++.+|.+.+..+| |+++|+++|||+|||++++..+++++...+. .++++++||+-|+.|....+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----------~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----------GKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----------ceEEEeeCCchHHHHHHHHH
Confidence 45688999999998888 9999999999999999999999999987543 46999999999999999888
Q ss_pred HHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCcc-CCCccEEEeccchhhhhcCcHHHHHHHH
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID-LSSLKFRVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~-l~~l~~lVlDEah~~l~~~f~~~l~~il 286 (620)
..++.+ ..+....||.....-...+....+|+|+||..|.+-|.++..+ |+.+.++|+||||+-....-+..+..-+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 877755 5555666664444444466677999999999999999887554 5899999999999986555555554333
Q ss_pred HhccccCCceEEeecCCCChHHHHHHHH--------------------------------------------------hc
Q 007044 287 GKVEDANKVQTLLFSATLPSWVKHISTK--------------------------------------------------FL 316 (620)
Q Consensus 287 ~~~~~~~~~q~ll~SATl~~~~~~~~~~--------------------------------------------------~~ 316 (620)
-..+.. ..|++++|||+......+..- ++
T Consensus 205 l~~k~~-~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 205 LDLKNQ-GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHhhhc-cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 333332 349999999965432221111 10
Q ss_pred cc--CCcEEEEecCcc----------cccccc--------------------------eE--------------------
Q 007044 317 KS--DKKTIDLVGNEK----------MKASTN--------------------------VR-------------------- 338 (620)
Q Consensus 317 ~~--~~~~i~~~~~~~----------~~~~~~--------------------------i~-------------------- 338 (620)
.. ....+....... .....+ ++
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 00 000000000000 000000 00
Q ss_pred ---------------------EEEEeC-CchhhhhhHHHHHHh---cCCCCeEEEEEcccccHHHHHHhccc-------c
Q 007044 339 ---------------------HIVLPC-SSSARSQVIPDIIRC---YSSGGRTIIFTETKESASQLADLLPG-------A 386 (620)
Q Consensus 339 ---------------------~~~~~~-~~~~~~~~l~~ll~~---~~~~~~~iVF~~t~~~~~~l~~~l~~-------~ 386 (620)
++.... ....+...+..++.. ..+..++||||.++..|..|...|.. .
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 000000 001122222222221 12456899999999999999988861 1
Q ss_pred h--------hhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccE
Q 007044 387 R--------ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458 (620)
Q Consensus 387 ~--------~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~ 458 (620)
. .-..+|+|.++..+++.|++|.++|||||.++++||||+.|++||-||.-.++...+||.|| ||+ +.|.
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCe
Confidence 1 11258999999999999999999999999999999999999999999999999999999999 999 6899
Q ss_pred EEEEeCCC
Q 007044 459 AVMLYDPR 466 (620)
Q Consensus 459 ~i~l~~~~ 466 (620)
|+++++..
T Consensus 522 ~vll~t~~ 529 (746)
T KOG0354|consen 522 CVLLTTGS 529 (746)
T ss_pred EEEEEcch
Confidence 99998844
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-32 Score=301.59 Aligned_cols=306 Identities=19% Similarity=0.203 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHHH-cC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVL-DG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il-~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
..++|+|.+++..++ +| +..+++.|||+|||++.+..+. .+.. ++|||||+.+|+.||.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~k---------------~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVKK---------------SCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhCC---------------CEEEEeCcHHHHHHHHHH
Confidence 478999999999877 44 4789999999999998765443 3321 289999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC--------CccCCCccEEEeccchhhhhcCc
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGF 278 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~--------~~~l~~l~~lVlDEah~~l~~~f 278 (620)
|..+.......+..++|+.... .....+|+|+|+..+.....+. .+.-..+.+||+||||++..
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--- 389 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--- 389 (732)
T ss_pred HHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---
Confidence 9988654455666666654221 1224789999999875432221 12234678999999999853
Q ss_pred HHHHHHHHHhccccCCceEEeecCCCChHHHHH--HHHhcccCCcEEEEecCc----ccccccceEEEEEe---------
Q 007044 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHI--STKFLKSDKKTIDLVGNE----KMKASTNVRHIVLP--------- 343 (620)
Q Consensus 279 ~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~--~~~~~~~~~~~i~~~~~~----~~~~~~~i~~~~~~--------- 343 (620)
..+..++..+.. ...+++|||+...-... ...++ .+......-.+ .......+..+.++
T Consensus 390 -~~fr~il~~l~a---~~RLGLTATP~ReD~~~~~L~~Li--GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y 463 (732)
T TIGR00603 390 -AMFRRVLTIVQA---HCKLGLTATLVREDDKITDLNFLI--GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREY 463 (732)
T ss_pred -HHHHHHHHhcCc---CcEEEEeecCcccCCchhhhhhhc--CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHH
Confidence 344556665543 46799999975321111 11111 12221110000 00011111111111
Q ss_pred ------------CCchhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcccchhhccccchHHHHHHHHHhhcC-C
Q 007044 344 ------------CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSG-K 409 (620)
Q Consensus 344 ------------~~~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~F~~g-~ 409 (620)
..+..|...+..++..+ ..+.++||||.+...+..++..|. +..+||++++.+|.++++.|+.| .
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-~~~I~G~ts~~ER~~il~~Fr~~~~ 542 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-KPFIYGPTSQQERMQILQNFQHNPK 542 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-CceEECCCCHHHHHHHHHHHHhCCC
Confidence 11233455566666654 267899999999999999999984 66799999999999999999975 8
Q ss_pred ceEEEecccccccCCCCCccEEEEcCCC-CCHHHHHHHhcccccCCCccEE-------EEEeCCC
Q 007044 410 FMTLVATNVAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGNTGVA-------VMLYDPR 466 (620)
Q Consensus 410 ~~vLvaTdv~~rGlDi~~v~~VI~~d~P-~s~~~yiqr~GRtgR~g~~G~~-------i~l~~~~ 466 (620)
+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ +.|+++.
T Consensus 543 i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 543 VNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred ccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 8999999999999999999999999998 5999999999999999876664 8888887
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.9e-32 Score=313.62 Aligned_cols=305 Identities=20% Similarity=0.285 Sum_probs=212.1
Q ss_pred CCCCCcHHHH---HHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 128 GIESLFPIQA---MTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 128 g~~~~~~~Q~---~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
.|....|+.. +.+..+.+++.+|++|+||||||. .+|.+..-.. . +...++++..|.|--|..++
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-~---------~~~~~I~~tQPRRlAA~svA 128 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-R---------GSHGLIGHTQPRRLAARTVA 128 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-C---------CCCceEecCCccHHHHHHHH
Confidence 3444445443 455566677889999999999999 4565432211 1 11225777889998777777
Q ss_pred HHHHHh-hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccch-hhhhcCcHHH-
Q 007044 205 EDFDVY-GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVED- 281 (620)
Q Consensus 205 ~~~~~~-~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah-~~l~~~f~~~- 281 (620)
..+... +...|-.|+.- .....+ ...++.|+|+|+|+|++.+.++.+ ++++++||||||| ++++.+|.-.
T Consensus 129 ~RvA~elg~~lG~~VGY~---vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~l 201 (1283)
T TIGR01967 129 QRIAEELGTPLGEKVGYK---VRFHDQ---VSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGY 201 (1283)
T ss_pred HHHHHHhCCCcceEEeeE---EcCCcc---cCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHH
Confidence 666433 22233333322 222221 234689999999999999987654 8999999999999 5888887754
Q ss_pred HHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch------hhhhhHHH
Q 007044 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS------ARSQVIPD 355 (620)
Q Consensus 282 l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~l~~ 355 (620)
+..++...+ +.|+|+||||++. ..+.+.|. +...+.+.+.. ..+...|.+.... .....+..
T Consensus 202 Lk~il~~rp---dLKlIlmSATld~--~~fa~~F~--~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~ 269 (1283)
T TIGR01967 202 LKQLLPRRP---DLKIIITSATIDP--ERFSRHFN--NAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILD 269 (1283)
T ss_pred HHHHHhhCC---CCeEEEEeCCcCH--HHHHHHhc--CCCEEEECCCc-----ccceeEEecccccccchhhhHHHHHHH
Confidence 555655443 5799999999975 45555553 33455544321 1233444433211 12222333
Q ss_pred HHHhc--CCCCeEEEEEcccccHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 007044 356 IIRCY--SSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (620)
Q Consensus 356 ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~ 426 (620)
.+... ...+.+|||+++..+++.++..|. .+..+||+|++.+|.++++.+ +..+||||||++++|||||
T Consensus 270 ~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIp 347 (1283)
T TIGR01967 270 AVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVP 347 (1283)
T ss_pred HHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccC
Confidence 33221 245899999999999999999886 256799999999999997654 3469999999999999999
Q ss_pred CccEEEEcCCC------------------CCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 427 DVQLIIQCEPP------------------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 427 ~v~~VI~~d~P------------------~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+|++||+++++ .|.++|.||+|||||.| +|.||.||+..
T Consensus 348 gV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 348 GIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred CeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 99999999854 36789999999999997 99999999865
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6e-32 Score=292.70 Aligned_cols=337 Identities=17% Similarity=0.288 Sum_probs=251.4
Q ss_pred HHCCCCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 125 KSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
.-.+|..+..+|..++|.+. ++.|+|+|||||||||-.|+|.|++.+...... ........+++||+|+++||..+
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~---~~i~k~~fKiVYIaPmKALa~Em 180 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ---GDIAKDDFKIVYIAPMKALAAEM 180 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc---cccccCCceEEEEechHHHHHHH
Confidence 34578899999999999988 668999999999999999999999999863221 12224567899999999999999
Q ss_pred HHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC----ccCCCccEEEeccchhhhhcCcH
Q 007044 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDEADEMLRMGFV 279 (620)
Q Consensus 204 ~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~----~~l~~l~~lVlDEah~~l~~~f~ 279 (620)
.+.|.+-....|++|..++|++...... -..++|+|+||+.+ |.+.|.. -.++.+++||+||+|.+ ....+
T Consensus 181 ~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RG 255 (1230)
T KOG0952|consen 181 VDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRG 255 (1230)
T ss_pred HHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhh-cCccc
Confidence 9999877777899999999998776554 22499999999997 5554432 23577999999999955 66677
Q ss_pred HHHHHHHHhcc-----ccCCceEEeecCCCChHHHHHHHHhcccC-CcEEEEecCcccccccceEEEEEeCCch---hhh
Q 007044 280 EDVELILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSS---ARS 350 (620)
Q Consensus 280 ~~l~~il~~~~-----~~~~~q~ll~SATl~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~---~~~ 350 (620)
..++.|+..+. .....+++.+|||+|+-. +++ .|++-+ +..+.. .+....+..+.+.++-++.. ...
T Consensus 256 pvlEtiVaRtlr~vessqs~IRivgLSATlPN~e-DvA-~fL~vn~~~glfs--Fd~~yRPvpL~~~~iG~k~~~~~~~~ 331 (1230)
T KOG0952|consen 256 PVLETIVARTLRLVESSQSMIRIVGLSATLPNYE-DVA-RFLRVNPYAGLFS--FDQRYRPVPLTQGFIGIKGKKNRQQK 331 (1230)
T ss_pred chHHHHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHH-HHhcCCCccceee--ecccccccceeeeEEeeecccchhhh
Confidence 88888877654 223579999999999943 333 455333 222222 22223334455555444333 111
Q ss_pred -----hhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc---------------------------cchhhccccchHHH
Q 007044 351 -----QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------GARALHGDIQQSQR 398 (620)
Q Consensus 351 -----~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~---------------------------~~~~lh~~l~~~~R 398 (620)
-....+++....+.+++|||.++..+.+.+..|. ....+|++|.-++|
T Consensus 332 ~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR 411 (1230)
T KOG0952|consen 332 KNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDR 411 (1230)
T ss_pred hhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhH
Confidence 1234455566688999999999999888877764 45678999999999
Q ss_pred HHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cCCCC------CHHHHHHHhcccccC--CCccEEEEEeCCC
Q 007044 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CEPPR------DVEAYIHRSGRTGRA--GNTGVAVMLYDPR 466 (620)
Q Consensus 399 ~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d~P~------s~~~yiqr~GRtgR~--g~~G~~i~l~~~~ 466 (620)
..+...|..|.++||+||..+|.|+|+|+-.++|- ||.-. ...+-+|..|||||. +..|.++.+.+.+
T Consensus 412 ~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 412 QLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 99999999999999999999999999997655553 44332 467789999999996 4589999988887
Q ss_pred -chHHHHH
Q 007044 467 -KSSVSKI 473 (620)
Q Consensus 467 -~~~~~~i 473 (620)
......+
T Consensus 492 kl~~Y~sL 499 (1230)
T KOG0952|consen 492 KLDHYESL 499 (1230)
T ss_pred HHHHHHHH
Confidence 4444333
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.8e-31 Score=296.07 Aligned_cols=315 Identities=21% Similarity=0.269 Sum_probs=214.2
Q ss_pred CCCcHHHHHHHHHHHcC---CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDG---SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g---~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
..|++.|.++++.+..+ +++++.|+||||||.+|+.++.+.+..+ .++||++||++|+.|+.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------------~~vLvLvPt~~L~~Q~~~~ 209 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------------KQALVLVPEIALTPQMLAR 209 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-------------CeEEEEeCcHHHHHHHHHH
Confidence 36899999999999874 8899999999999999999888877653 2599999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHH----hcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC---c-
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---F- 278 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~---f- 278 (620)
|...+ +..+..++|+.+...+... ....++|+|||++.+. ..++++++||+||+|...-.+ .
T Consensus 210 l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~ 279 (679)
T PRK05580 210 FRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPR 279 (679)
T ss_pred HHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCC
Confidence 98753 4678899999876544332 2346899999999874 457889999999999764322 1
Q ss_pred --HHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC--Cc---h-hhh
Q 007044 279 --VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC--SS---S-ARS 350 (620)
Q Consensus 279 --~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~---~-~~~ 350 (620)
..++....... .+.+++++|||.+......+. ......+.+...........+..+.... .. . -..
T Consensus 280 y~~r~va~~ra~~---~~~~~il~SATps~~s~~~~~---~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 280 YHARDLAVVRAKL---ENIPVVLGSATPSLESLANAQ---QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred CcHHHHHHHHhhc---cCCCEEEEcCCCCHHHHHHHh---ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 12332222222 267999999997754433322 1222233322211101111111111100 00 0 012
Q ss_pred hhHHHHHHhcCCCCeEEEEEcccc--------------------------------------------------------
Q 007044 351 QVIPDIIRCYSSGGRTIIFTETKE-------------------------------------------------------- 374 (620)
Q Consensus 351 ~~l~~ll~~~~~~~~~iVF~~t~~-------------------------------------------------------- 374 (620)
.++..+-+....+.++|||+|++.
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 233444445556678999988532
Q ss_pred ----cHHHHHHhcc------cchhhccccch--HHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE--cCCCC--
Q 007044 375 ----SASQLADLLP------GARALHGDIQQ--SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ--CEPPR-- 438 (620)
Q Consensus 375 ----~~~~l~~~l~------~~~~lh~~l~~--~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~--~d~P~-- 438 (620)
.++.+++.|. .+..+|+++.+ .+++.+++.|++|+++|||+|+++++|+|+|+|++|+. +|.+-
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 1233333332 45678999874 57899999999999999999999999999999999865 45443
Q ss_pred --------CHHHHHHHhcccccCCCccEEEEEeC-CCchHHHHH
Q 007044 439 --------DVEAYIHRSGRTGRAGNTGVAVMLYD-PRKSSVSKI 473 (620)
Q Consensus 439 --------s~~~yiqr~GRtgR~g~~G~~i~l~~-~~~~~~~~i 473 (620)
....|+|++||+||++..|.+++... |....+..+
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 24679999999999999999987554 434444433
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-31 Score=294.22 Aligned_cols=324 Identities=22% Similarity=0.317 Sum_probs=228.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|. .|+++|...--.+..|+ |+.++||+|||++|++|++..+..+. .++|++||++||.|.+++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~-------------~V~VvTpn~yLA~qd~e~ 142 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR-------------GVHIVTVNDYLAKRDSQW 142 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEcCCHHHHHHHHHH
Confidence 354 78888887766666666 89999999999999999997776543 289999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC-CccC-----CCccEEEeccchhhhh----
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NIDL-----SSLKFRVLDEADEMLR---- 275 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~-~~~l-----~~l~~lVlDEah~~l~---- 275 (620)
+..+...+|+++++++||.+...+...+ .+||+||||++| .|+|..+ .+++ ..+.++|+||||.||-
T Consensus 143 m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeAr 220 (896)
T PRK13104 143 MKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEAR 220 (896)
T ss_pred HHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccC
Confidence 9999999999999999998877665444 599999999999 9999876 3444 5899999999999871
Q ss_pred ------------cCcHHHHHHHHHhcccc------------CCceEEeecCC--------------CC------------
Q 007044 276 ------------MGFVEDVELILGKVEDA------------NKVQTLLFSAT--------------LP------------ 305 (620)
Q Consensus 276 ------------~~f~~~l~~il~~~~~~------------~~~q~ll~SAT--------------l~------------ 305 (620)
..++..+..+...+... .+.+.+.++-. ++
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~ 300 (896)
T PRK13104 221 TPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIM 300 (896)
T ss_pred CceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhh
Confidence 01333334444433221 01122222221 00
Q ss_pred --hHHHHHH--HHhcccCCcEE------EEecCcc---------------------------------------------
Q 007044 306 --SWVKHIS--TKFLKSDKKTI------DLVGNEK--------------------------------------------- 330 (620)
Q Consensus 306 --~~~~~~~--~~~~~~~~~~i------~~~~~~~--------------------------------------------- 330 (620)
.++.... ..++..+...| .+++...
T Consensus 301 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~ 380 (896)
T PRK13104 301 LMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYN 380 (896)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcc
Confidence 0011111 11121222111 0110000
Q ss_pred ---------------cccccceEEEEEe---------------CCchhhh-hhHHHHHHhcCCCCeEEEEEcccccHHHH
Q 007044 331 ---------------MKASTNVRHIVLP---------------CSSSARS-QVIPDIIRCYSSGGRTIIFTETKESASQL 379 (620)
Q Consensus 331 ---------------~~~~~~i~~~~~~---------------~~~~~~~-~~l~~ll~~~~~~~~~iVF~~t~~~~~~l 379 (620)
.....++....++ .....+. .++..+...+..+.|+||||+|+..++.+
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~l 460 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL 460 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 0000001111111 1122333 34555666677899999999999999999
Q ss_pred HHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC-----------------------------
Q 007044 380 ADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN----------------------------- 426 (620)
Q Consensus 380 ~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~----------------------------- 426 (620)
+..|. ....||+++.+.+|..+.+.|+.| .|+||||+|+||+||.
T Consensus 461 s~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (896)
T PRK13104 461 SQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQ 538 (896)
T ss_pred HHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhh
Confidence 99997 567899999999999999999999 4999999999999987
Q ss_pred ---------CccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHH
Q 007044 427 ---------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (620)
Q Consensus 427 ---------~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~ 470 (620)
+==|||--..+.|..-=-|--||+||-|.+|.+-+|++-.+..+
T Consensus 539 ~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 539 KRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 22368888889999999999999999999999998888764444
No 82
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=259.06 Aligned_cols=335 Identities=21% Similarity=0.302 Sum_probs=254.5
Q ss_pred CCccccCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSK-GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
.+.-++|+++.+..+.|+.. ..+.++|.|..+|...+.|.|+++..|||.||+++|.+|++- ..+
T Consensus 70 awdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~--adg------------ 135 (695)
T KOG0353|consen 70 AWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC--ADG------------ 135 (695)
T ss_pred ccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--cCC------------
Confidence 34456899999999988764 678899999999999999999999999999999999999873 232
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHH---HHHh---cCCCcEEEeChHHHHHH---Hhc--C
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ---EFKL---KKGIDVVIGTPGRIKDH---IER--G 255 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~---~~~l---~~~~~IlV~Tp~rl~~~---l~~--~ 255 (620)
.+||+||...|.....-.++.++ +....+....+...- ...+ .....++..||+.+... |.+ .
T Consensus 136 --~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 136 --FALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred --ceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 28999999999988777777764 444444443332221 1122 23578999999988442 221 3
Q ss_pred CccCCCccEEEeccchhhhhcC--cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCccccc
Q 007044 256 NIDLSSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333 (620)
Q Consensus 256 ~~~l~~l~~lVlDEah~~l~~~--f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 333 (620)
.+....+..+.+||+|+...|| |+.++..+--.-...++..++.++||.++.+..-++..+. ......+..+ ..
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~-ie~~~tf~a~---fn 285 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILC-IEAAFTFRAG---FN 285 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh-HHhhheeecc---cC
Confidence 4556678899999999999988 7777665322222233678999999999988877777763 2222222211 22
Q ss_pred ccceEEEEEeC--CchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhc
Q 007044 334 STNVRHIVLPC--SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (620)
Q Consensus 334 ~~~i~~~~~~~--~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~ 407 (620)
.+++...+..- ...+..+-+..++.....+...||||-++.+++.++..|+ .+..+|+.|.+.+|.-+-+.|-.
T Consensus 286 r~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a 365 (695)
T KOG0353|consen 286 RPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA 365 (695)
T ss_pred CCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc
Confidence 23333333222 2233344455555544567889999999999999999998 57789999999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHH------------------------------------------
Q 007044 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH------------------------------------------ 445 (620)
Q Consensus 408 g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiq------------------------------------------ 445 (620)
|+++|+|||-.+++|||-|+|++|||..+|.|.+.|.|
T Consensus 366 ~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfse 445 (695)
T KOG0353|consen 366 GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSE 445 (695)
T ss_pred cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecc
Confidence 99999999999999999999999999999999999999
Q ss_pred -HhcccccCCCccEEEEEeCCC
Q 007044 446 -RSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 446 -r~GRtgR~g~~G~~i~l~~~~ 466 (620)
.+||+||.|.+..||++|.-.
T Consensus 446 kesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 446 KESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhccccccCCCcccEEEEechH
Confidence 789999999999999998755
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.7e-30 Score=292.70 Aligned_cols=356 Identities=17% Similarity=0.188 Sum_probs=229.3
Q ss_pred CCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
..|.|+|..++..++.. ..+|+...+|.|||..+++.+.+.+..+. .-++|||||+ .|..||..++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~-----------~~rvLIVvP~-sL~~QW~~El 218 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-----------AERVLILVPE-TLQHQWLVEM 218 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----------CCcEEEEcCH-HHHHHHHHHH
Confidence 36899999998777643 57999999999999998777766655542 2259999998 8999999999
Q ss_pred HHhhcCCCceEEEEeCCcchHHHHH---HhcCCCcEEEeChHHHHHHHhc-CCccCCCccEEEeccchhhhhcC--cHHH
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMG--FVED 281 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~~lVlDEah~~l~~~--f~~~ 281 (620)
.+.+ ++....+ ++........ ......+++|+|.+.+...-.. ..+.-..+++||+||||++-... -...
T Consensus 219 ~~kF---~l~~~i~-~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~ 294 (956)
T PRK04914 219 LRRF---NLRFSLF-DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSRE 294 (956)
T ss_pred HHHh---CCCeEEE-cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHH
Confidence 6543 2333333 3222111100 1112478999999987652110 11222467899999999985211 1111
Q ss_pred HHHHHHhccccCCceEEeecCCCCh--------------------------------HHHHHHHHhcccCC---------
Q 007044 282 VELILGKVEDANKVQTLLFSATLPS--------------------------------WVKHISTKFLKSDK--------- 320 (620)
Q Consensus 282 l~~il~~~~~~~~~q~ll~SATl~~--------------------------------~~~~~~~~~~~~~~--------- 320 (620)
+..+ ..+... ...++++|||.-. .+..+...++...+
T Consensus 295 y~~v-~~La~~-~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l 372 (956)
T PRK04914 295 YQVV-EQLAEV-IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNAL 372 (956)
T ss_pred HHHH-HHHhhc-cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 2222 222111 2468999999321 00000000110000
Q ss_pred -------c---------------------------------EEEEecCcc---cccccceEEEEEeC-------------
Q 007044 321 -------K---------------------------------TIDLVGNEK---MKASTNVRHIVLPC------------- 344 (620)
Q Consensus 321 -------~---------------------------------~i~~~~~~~---~~~~~~i~~~~~~~------------- 344 (620)
. .+-+.+... ......+..+.+..
T Consensus 373 ~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~ 452 (956)
T PRK04914 373 GELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLE 452 (956)
T ss_pred HHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHH
Confidence 0 000000000 00000011111111
Q ss_pred -----------------------CchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchH
Q 007044 345 -----------------------SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQS 396 (620)
Q Consensus 345 -----------------------~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~ 396 (620)
....|...|..+++.. .+.++||||+++..+..+...|. .+..+||+|++.
T Consensus 453 ~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~ 531 (956)
T PRK04914 453 ARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSII 531 (956)
T ss_pred HHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHH
Confidence 0122344566666655 46799999999999999999994 466799999999
Q ss_pred HHHHHHHHhhcC--CceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHH
Q 007044 397 QREVTLAGFRSG--KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473 (620)
Q Consensus 397 ~R~~~~~~F~~g--~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i 473 (620)
+|.++++.|+++ .++|||||+++++|+|++.+++|||||+|+++..|+||+||+||.|++|.+..++... ...-..+
T Consensus 532 eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i 611 (956)
T PRK04914 532 ERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERL 611 (956)
T ss_pred HHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHH
Confidence 999999999984 6999999999999999999999999999999999999999999999999775555444 4445555
Q ss_pred HHHhC--CCceeeCCCCHHHHHHHHhHHHHHHh
Q 007044 474 ERESG--VKFEHISAPQPADIAKAAGVEAAETI 504 (620)
Q Consensus 474 ~~~~~--~~~~~~~~p~~~~i~~~~~~~~~~~~ 504 (620)
.+.+. ..+-+...|+...+.......+...+
T Consensus 612 ~~~~~~~l~ife~~~~~~~~v~~~~~~~l~~~l 644 (956)
T PRK04914 612 FRWYHEGLNAFEHTCPTGRALYDEFGDELIPYL 644 (956)
T ss_pred HHHHhhhcCceeccCCCHHHHHHHHHHHHHHHH
Confidence 55444 45667788888888876666655555
No 84
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=2e-30 Score=285.20 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=134.3
Q ss_pred cccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccC
Q 007044 111 VSRFRISVPLREKLK-----SKGIESL---FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (620)
Q Consensus 111 ~~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 182 (620)
.+.|++.+++...+. ..||..| +|+|.++||.++.++|+|++++||+|||++|++|++..+..+.
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------- 136 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------- 136 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-------
Confidence 467889999988877 6899999 9999999999999999999999999999999999998886532
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcCCccCC-
Q 007044 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGNIDLS- 260 (620)
Q Consensus 183 ~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~~~l~- 260 (620)
.++||+||++||.|+++.+..++.++++++.+++||.+...+...+ ++||+|||||+| .|+++.+.+.++
T Consensus 137 ------~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~ 208 (970)
T PRK12899 137 ------PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRK 208 (970)
T ss_pred ------CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCH
Confidence 2899999999999999999999999999999999999998887665 599999999999 999998866665
Q ss_pred ------CccEEEeccchhhh
Q 007044 261 ------SLKFRVLDEADEML 274 (620)
Q Consensus 261 ------~l~~lVlDEah~~l 274 (620)
.+.++||||||.||
T Consensus 209 ~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 209 EEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHhhcccccEEEEechhhhh
Confidence 45899999999987
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=1.4e-30 Score=251.62 Aligned_cols=197 Identities=44% Similarity=0.685 Sum_probs=180.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeE
Q 007044 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (620)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (620)
|+++++++.+.+.|.+.|+..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... ..++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------KDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------cCCceE
Confidence 678999999999999999999999999999999999999999999999999999999999887531 246789
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccc
Q 007044 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (620)
Q Consensus 191 Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEa 270 (620)
+|++||++|+.|+...+..+....++.+..++|+.+.......+..+++|+|+||++|.+++.++...+.+++++|+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999887889999999999887777777778999999999999999988888999999999999
Q ss_pred hhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcc
Q 007044 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317 (620)
Q Consensus 271 h~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~ 317 (620)
|.+.+.+|...+..++..++. .+|++++|||+++.+..+...++.
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~--~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPK--DRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred HHhhccChHHHHHHHHHhCCc--ccEEEEEeccCCHHHHHHHHHHCC
Confidence 999999999999999999876 789999999999999999888883
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=4.2e-30 Score=272.14 Aligned_cols=321 Identities=23% Similarity=0.343 Sum_probs=245.8
Q ss_pred CCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHHcC------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 114 FRISVPLREKL-KSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 114 ~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~g------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
++.+..+++.+ ....| +||..|.+++..|... .+-+++|..|||||+++++.++..+..+.
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~----------- 312 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY----------- 312 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-----------
Confidence 44555665555 55566 8999999999998854 45789999999999999999999998764
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHH---HhcC-CCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
++..++||--||.|.++.+.++....|++|..++|...-..... .+.+ ..+|+|||..-+.+ ...++++
T Consensus 313 --Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~L 385 (677)
T COG1200 313 --QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNL 385 (677)
T ss_pred --eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecce
Confidence 49999999999999999999999999999999999876554433 3344 49999999876654 6779999
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHH-hcccCCcEEEEecCcccccccceEEEE
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK-FLKSDKKTIDLVGNEKMKASTNVRHIV 341 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~i~~~~ 341 (620)
.++|+||-|++.- .+-..+..+-.. .+..++||||.-+. .++-. |-.-+-..|+ +.+.....|....
T Consensus 386 gLVIiDEQHRFGV----~QR~~L~~KG~~--~Ph~LvMTATPIPR--TLAlt~fgDldvS~Id----ElP~GRkpI~T~~ 453 (677)
T COG1200 386 GLVIIDEQHRFGV----HQRLALREKGEQ--NPHVLVMTATPIPR--TLALTAFGDLDVSIID----ELPPGRKPITTVV 453 (677)
T ss_pred eEEEEeccccccH----HHHHHHHHhCCC--CCcEEEEeCCCchH--HHHHHHhccccchhhc----cCCCCCCceEEEE
Confidence 9999999998741 222233333221 46899999996553 23322 3222333332 2234445555555
Q ss_pred EeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHH--------HHHHhcc------cchhhccccchHHHHHHHHHhhc
Q 007044 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS--------QLADLLP------GARALHGDIQQSQREVTLAGFRS 407 (620)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~--------~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~ 407 (620)
+. ...+..++..+......|.++.|.|+-.++.+ .++..|. .+..+||.|++.+++.+|++|++
T Consensus 454 i~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~ 531 (677)
T COG1200 454 IP--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE 531 (677)
T ss_pred ec--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc
Confidence 44 45667777788877778999999999876654 3333333 47889999999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHH-hcccccCCCccEEEEEeCCCc
Q 007044 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR-SGRTGRAGNTGVAVMLYDPRK 467 (620)
Q Consensus 408 g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr-~GRtgR~g~~G~~i~l~~~~~ 467 (620)
|+++|||||.|.+.|||+|+.++.|.++.-+---+-+|. -||+||.+..+.|++++.+..
T Consensus 532 ~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 532 GEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999999999888765555555 499999999999999999883
No 87
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.8e-31 Score=279.26 Aligned_cols=308 Identities=20% Similarity=0.250 Sum_probs=241.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
.++-|+|..+|..+-++..|+|.|.|.+|||.++-..|.+.|...+ |++|.+|-++|.+|-++++..
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-------------RVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-------------RVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-------------eEEeeChhhhhcchhHHHHHH
Confidence 4678999999999999999999999999999999999988887654 599999999999999999976
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
-++. |+.++|+..++. .+..+|+|.+.|..++.+|.--++.+.|||+||+|.|-|...+--++.-+-.+
T Consensus 195 EF~D----VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll 263 (1041)
T KOG0948|consen 195 EFKD----VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL 263 (1041)
T ss_pred Hhcc----cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec
Confidence 6544 566777766543 48899999999999999998889999999999999999887777777777778
Q ss_pred cccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch-----------hhh----hhHH
Q 007044 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS-----------ARS----QVIP 354 (620)
Q Consensus 290 ~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~----~~l~ 354 (620)
|+ +.+.+++|||+|+.. +++.....-......++..+ ..++.++|+.++.... .+. .++.
T Consensus 264 P~--~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~ 338 (1041)
T KOG0948|consen 264 PD--NVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMS 338 (1041)
T ss_pred cc--cceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHH
Confidence 87 789999999999853 44444332223333333222 3345667766553220 011 1111
Q ss_pred HHHHhc------------------------------------CCCCeEEEEEcccccHHHHHHhcc--------------
Q 007044 355 DIIRCY------------------------------------SSGGRTIIFTETKESASQLADLLP-------------- 384 (620)
Q Consensus 355 ~ll~~~------------------------------------~~~~~~iVF~~t~~~~~~l~~~l~-------------- 384 (620)
.+.... ....++|||+-++++|+.++-.+.
T Consensus 339 ~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 339 VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 111110 122489999999999999987773
Q ss_pred -----------------------------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE--
Q 007044 385 -----------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ-- 433 (620)
Q Consensus 385 -----------------------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~-- 433 (620)
+++++||++-+--++-+.-.|.+|-+++|+||.+++.|||.|+-++|+.
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~ 498 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAV 498 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeec
Confidence 5678899999999999999999999999999999999999998887775
Q ss_pred --cCC----CCCHHHHHHHhcccccCCC--ccEEEEEeCCC
Q 007044 434 --CEP----PRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (620)
Q Consensus 434 --~d~----P~s~~~yiqr~GRtgR~g~--~G~~i~l~~~~ 466 (620)
||- .-+.-.|+|++|||||-|. .|.||++++..
T Consensus 499 rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 499 RKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 332 2367799999999999987 79999999988
No 88
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=273.92 Aligned_cols=308 Identities=22% Similarity=0.271 Sum_probs=237.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
.+|-.+|++||-++..|..|+|.|+|.+|||+++-..|.....+ ..|++|.+|-++|.+|-++.|+.
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-------------~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-------------MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-------------ccceEecchhhhhccchHHHHHH
Confidence 37889999999999999999999999999999876666544333 33599999999999999999987
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
-+...| .++|+..... .+.++|+|.+.|..++.+|.--++++.+||+||+|.+-|...+--++.++-++
T Consensus 363 tF~Dvg----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred hccccc----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec
Confidence 665443 7788776544 48999999999999999988778999999999999999888888899999999
Q ss_pred cccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc-----------------------
Q 007044 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS----------------------- 346 (620)
Q Consensus 290 ~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----------------------- 346 (620)
|. ..++|++|||.|+.. +++....+...+.|.+....+ .+..+.|+++.-..
T Consensus 432 P~--HV~~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~k--RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 432 PR--HVNFILLSATVPNTL-EFADWIGRTKQKTIYVISTSK--RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred cc--cceEEEEeccCCChH-HHHHHhhhccCceEEEEecCC--CccceEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 98 899999999999864 344444433444444443321 11122222221100
Q ss_pred -----------------------------------------hhhh-hhHHHHHHhcC--CCCeEEEEEcccccHHHHHHh
Q 007044 347 -----------------------------------------SARS-QVIPDIIRCYS--SGGRTIIFTETKESASQLADL 382 (620)
Q Consensus 347 -----------------------------------------~~~~-~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~ 382 (620)
..+. ....+++..+. .--++||||-+++.|++.++.
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 0000 12333333221 224899999999999999988
Q ss_pred cc-------------------------------------------cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 383 LP-------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 383 l~-------------------------------------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
|. ++.++||++-+--++-+.-.|..|-++||+||.++
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 84 56688999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcC--------CCCCHHHHHHHhcccccCCC--ccEEEEEeCCC
Q 007044 420 ARGLDINDVQLIIQCE--------PPRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d--------~P~s~~~yiqr~GRtgR~g~--~G~~i~l~~~~ 466 (620)
|+|+|.|.-++|+.-= .--.+-.|.|++|||||-|- .|.+|++....
T Consensus 667 AMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999887777521 12357899999999999986 78888887655
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.7e-29 Score=276.97 Aligned_cols=319 Identities=20% Similarity=0.245 Sum_probs=230.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHH-HHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil-~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
.|+ .|+++|.-..-.+..|+ |+.++||+|||+++.+|++ +.+. +. .+-|++||+.||.|.++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-G~-------------~V~IvTpn~yLA~rd~e 140 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-GK-------------GVHVVTVNDYLAKRDAE 140 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-CC-------------CEEEEecCHHHHHHHHH
Confidence 455 78999988877777775 9999999999999999996 5553 32 27799999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcCC------ccCCCccEEEeccchhhhh---
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLSSLKFRVLDEADEMLR--- 275 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~------~~l~~l~~lVlDEah~~l~--- 275 (620)
++..+...+|+++++++|+.+...+...+ .+||++|||++| .|+|..+. ..++.+.++||||||.||=
T Consensus 141 ~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 141 WMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 99999999999999999999887766554 499999999999 99997653 3467899999999999871
Q ss_pred -------------cCcHHHHHHHHHhccccC------Cc-----------------------------------------
Q 007044 276 -------------MGFVEDVELILGKVEDAN------KV----------------------------------------- 295 (620)
Q Consensus 276 -------------~~f~~~l~~il~~~~~~~------~~----------------------------------------- 295 (620)
..++..+..+...+.... ..
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 113444444444442210 11
Q ss_pred --------------------------------------------------------------------eEEeecCCCChH
Q 007044 296 --------------------------------------------------------------------QTLLFSATLPSW 307 (620)
Q Consensus 296 --------------------------------------------------------------------q~ll~SATl~~~ 307 (620)
.+.+||+|....
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 222222222222
Q ss_pred HHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHh-cCCCCeEEEEEcccccHHHHHHhcc--
Q 007044 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP-- 384 (620)
Q Consensus 308 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~-- 384 (620)
...+...|- -.++.+.. ..+......... +......|...+...+.. +..+.++||||+|+..++.++..|.
T Consensus 379 ~~E~~~iY~---l~vv~IPt-nkp~~r~d~~d~-i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 379 AEEFREIYN---LDVVVIPT-NRPMIRIDHPDL-IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred HHHHHHHhC---CCEEEcCC-CCCeeeeeCCCe-EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 222222111 11111110 001111111111 122334566666666543 4577899999999999999999997
Q ss_pred --cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCc----------------------------------
Q 007044 385 --GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV---------------------------------- 428 (620)
Q Consensus 385 --~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v---------------------------------- 428 (620)
.+..|||. +.+|+..+..|+.+...|+||||+|+||+||+--
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 56678985 8899999999999999999999999999999732
Q ss_pred ----cEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHHH
Q 007044 429 ----QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (620)
Q Consensus 429 ----~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~~ 471 (620)
=|||--..|.|..---|-.||+||-|.+|.+-+|++-.+..++
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~ 578 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMR 578 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHH
Confidence 3788889999999999999999999999999999887744443
No 90
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.9e-29 Score=275.68 Aligned_cols=320 Identities=18% Similarity=0.245 Sum_probs=223.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|.-+.-.+..|+ |+...||+|||+++.+|++.....+.. |-|++||.-||.|-++.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~-------------v~vvT~neyLA~Rd~e~ 140 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKG-------------VHVVTVNEYLSSRDATE 140 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCC-------------eEEEeccHHHHHhhHHH
Confidence 354 89999988877777777 999999999999999999988877654 89999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhhh----
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l~---- 275 (620)
+..+...+|++|+++.++.+....... ..+||+.||...| .|+|+.. ....+.+.+.|+||+|.+|=
T Consensus 141 ~~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDear 218 (796)
T PRK12906 141 MGELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEAR 218 (796)
T ss_pred HHHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCC
Confidence 999999999999999988766544333 3589999998876 3444331 22346788999999999861
Q ss_pred -----------c-CcHHHHHHHHHhcccc-----------------CCc-------------------------------
Q 007044 276 -----------M-GFVEDVELILGKVEDA-----------------NKV------------------------------- 295 (620)
Q Consensus 276 -----------~-~f~~~l~~il~~~~~~-----------------~~~------------------------------- 295 (620)
+ .++..+..+...+... ...
T Consensus 219 tPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~ 298 (796)
T PRK12906 219 TPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALA 298 (796)
T ss_pred CceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHH
Confidence 0 1222233333322110 001
Q ss_pred ------------------------------------------------------------------------------eE
Q 007044 296 ------------------------------------------------------------------------------QT 297 (620)
Q Consensus 296 ------------------------------------------------------------------------------q~ 297 (620)
++
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 11
Q ss_pred EeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHH-HhcCCCCeEEEEEcccccH
Q 007044 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII-RCYSSGGRTIIFTETKESA 376 (620)
Q Consensus 298 ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~iVF~~t~~~~ 376 (620)
.+||+|.......+.+.|- -.++.+.. ..+.........++ .....+...+...+ .....+.++||||+|+..+
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~---l~vv~IPt-nkp~~r~d~~d~i~-~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYN---MEVITIPT-NRPVIRKDSPDLLY-PTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hccCCCCHHHHHHHHHHhC---CCEEEcCC-CCCeeeeeCCCeEE-cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 1122221111111111110 00110000 00000000111111 12234555555554 4456789999999999999
Q ss_pred HHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC---Ccc-----EEEEcCCCCCHHHHH
Q 007044 377 SQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQCEPPRDVEAYI 444 (620)
Q Consensus 377 ~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~---~v~-----~VI~~d~P~s~~~yi 444 (620)
+.++..|. .+..+|+++.+.++..+..+++.|. |+|||++|+||+||+ +|. |||+++.|.|...|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 99999997 5678999999888888888888886 999999999999994 899 999999999999999
Q ss_pred HHhcccccCCCccEEEEEeCCCchHHH
Q 007044 445 HRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (620)
Q Consensus 445 qr~GRtgR~g~~G~~i~l~~~~~~~~~ 471 (620)
|+.|||||.|.+|.+.+|++..+..++
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~l~~ 558 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDDLMR 558 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccchHHH
Confidence 999999999999999999998854443
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=6.3e-29 Score=280.00 Aligned_cols=311 Identities=20% Similarity=0.217 Sum_probs=206.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
...|+|+|..+......+.-+|+.||||+|||.++++.+...+..+ ...+++|.+||+++++|+++.+.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-----------~~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-----------LADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----------CCCeEEEECcHHHHHHHHHHHHH
Confidence 3489999998865544567799999999999999877665444332 22359999999999999999987
Q ss_pred HhhcC--CCceEEEEeCCcchHHHHH---------------------Hh---cC---CCcEEEeChHHHHHHHhc-CCcc
Q 007044 209 VYGGA--VGLTSCCLYGGAPYHAQEF---------------------KL---KK---GIDVVIGTPGRIKDHIER-GNID 258 (620)
Q Consensus 209 ~~~~~--~~~~v~~~~gg~~~~~~~~---------------------~l---~~---~~~IlV~Tp~rl~~~l~~-~~~~ 258 (620)
.+... ...++...+|......... -+ .+ -.+|+|||...++..+.. +...
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 64332 1346777777654221110 01 11 169999999988755432 2222
Q ss_pred CCCc----cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHH-HHHHhcccC-------CcEEEEe
Q 007044 259 LSSL----KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH-ISTKFLKSD-------KKTIDLV 326 (620)
Q Consensus 259 l~~l----~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~-~~~~~~~~~-------~~~i~~~ 326 (620)
+..+ ++|||||+|.+ +.-....+..++..+... ...+|+||||+|..... +...|-... ...+...
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~ 510 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWR 510 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccc
Confidence 2222 58999999987 444445566666665432 46799999999987654 333331100 0011000
Q ss_pred cCc---ccccc------cceEEEEEe-C--Cc-hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-------cc
Q 007044 327 GNE---KMKAS------TNVRHIVLP-C--SS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------GA 386 (620)
Q Consensus 327 ~~~---~~~~~------~~i~~~~~~-~--~~-~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-------~~ 386 (620)
... ..... ..-..+.+. . .. .....++..+++....++++||||||++.|+.++..|. .+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 511 GVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred ccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 000 00000 000011110 0 10 11234556666666678899999999999999998886 36
Q ss_pred hhhccccchHHH----HHHHHHh-hcCC---ceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCC
Q 007044 387 RALHGDIQQSQR----EVTLAGF-RSGK---FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455 (620)
Q Consensus 387 ~~lh~~l~~~~R----~~~~~~F-~~g~---~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~ 455 (620)
..+||.+++.+| .++++.| ++|+ ..|||||+++++|||| +++++|....| .+.|+||+||+||.++
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 789999999999 4678888 6666 4799999999999999 58999999888 6899999999999986
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.6e-29 Score=268.10 Aligned_cols=291 Identities=23% Similarity=0.318 Sum_probs=194.0
Q ss_pred EEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHH
Q 007044 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (620)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~ 229 (620)
++.|+||||||.+|+..+...+..+. ++||++|+++|+.|+++.|+..+ +..+..++++.+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~-------------~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK-------------SVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHH
Confidence 46899999999999877666665432 49999999999999999998653 456788888876544
Q ss_pred HHHH----hcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC---c---HHHHHHHHHhccccCCceEEe
Q 007044 230 QEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---F---VEDVELILGKVEDANKVQTLL 299 (620)
Q Consensus 230 ~~~~----l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~---f---~~~l~~il~~~~~~~~~q~ll 299 (620)
.... ....++|||||+..+. ..+.++++||+||+|...-.+ . ..++........ +.++++
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~---~~~vil 134 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF---NCPVVL 134 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc---CCCEEE
Confidence 3222 2345899999999873 357889999999999765322 1 223334444433 578999
Q ss_pred ecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchh-----hhhhHHHHHHhcCCCCeEEEEEcccc
Q 007044 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA-----RSQVIPDIIRCYSSGGRTIIFTETKE 374 (620)
Q Consensus 300 ~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~l~~ll~~~~~~~~~iVF~~t~~ 374 (620)
+|||.+......+ .......+.+...........+.- +...... -..++..+.+....+.++|||+|++.
T Consensus 135 ~SATPsles~~~~---~~g~~~~~~l~~r~~~~~~p~v~v--id~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrG 209 (505)
T TIGR00595 135 GSATPSLESYHNA---KQKAYRLLVLTRRVSGRKPPEVKL--IDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRG 209 (505)
T ss_pred EeCCCCHHHHHHH---hcCCeEEeechhhhcCCCCCeEEE--EecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCc
Confidence 9999554332222 112222222211110011111111 1111111 12344455556667789999987654
Q ss_pred c------------------------------------------------------------HHHHHHhc----c--cchh
Q 007044 375 S------------------------------------------------------------ASQLADLL----P--GARA 388 (620)
Q Consensus 375 ~------------------------------------------------------------~~~l~~~l----~--~~~~ 388 (620)
- .+++.+.| . .+..
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~ 289 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIAR 289 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEE
Confidence 2 23333333 3 4567
Q ss_pred hccccchHHH--HHHHHHhhcCCceEEEecccccccCCCCCccEEE--EcCC----CC------CHHHHHHHhcccccCC
Q 007044 389 LHGDIQQSQR--EVTLAGFRSGKFMTLVATNVAARGLDINDVQLII--QCEP----PR------DVEAYIHRSGRTGRAG 454 (620)
Q Consensus 389 lh~~l~~~~R--~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI--~~d~----P~------s~~~yiqr~GRtgR~g 454 (620)
+|+++++..+ +.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||+||++
T Consensus 290 ~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 290 IDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred EecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC
Confidence 8999988766 8999999999999999999999999999999985 5664 32 2578999999999999
Q ss_pred CccEEEE-EeCCCchHHH
Q 007044 455 NTGVAVM-LYDPRKSSVS 471 (620)
Q Consensus 455 ~~G~~i~-l~~~~~~~~~ 471 (620)
..|.+++ .+.|+...+.
T Consensus 370 ~~g~viiqt~~p~~~~~~ 387 (505)
T TIGR00595 370 DPGQVIIQTYNPNHPAIQ 387 (505)
T ss_pred CCCEEEEEeCCCCCHHHH
Confidence 9999875 4455544343
No 93
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.6e-28 Score=273.89 Aligned_cols=316 Identities=19% Similarity=0.263 Sum_probs=238.9
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
...|| .|-++|++++..+..|..|+++||||||||.+.-..+...+..+. +++|++|.++|.+|.+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-------------rviYTsPIKALsNQKy 179 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------------RVIYTSPIKALSNQKY 179 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------------ceEeccchhhhhhhHH
Confidence 44566 799999999999999999999999999999998888888887764 3999999999999999
Q ss_pred HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHH
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 284 (620)
.+|........-.++.++|+.+++. ++.|+|+|.+.|.+++.++...+..+.+||+||+|.|.+...+.-++.
T Consensus 180 rdl~~~fgdv~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHHhhhhhhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 9987544322233577788776554 589999999999999999988999999999999999999999999999
Q ss_pred HHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC-------chhh------hh
Q 007044 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-------SSAR------SQ 351 (620)
Q Consensus 285 il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------~~~~------~~ 351 (620)
++-.+|. ..++++||||+|+.. ++...+.......+.++..+ .-+..+.|+++.-. ...+ ..
T Consensus 253 ~Ii~lP~--~v~~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~ 327 (1041)
T COG4581 253 VIILLPD--HVRFVFLSATVPNAE-EFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPS 327 (1041)
T ss_pred HHHhcCC--CCcEEEEeCCCCCHH-HHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchh
Confidence 9999988 789999999999853 33333322222223232222 11222333332210 0000 00
Q ss_pred hHHHH--------------------------------------HHhc--CCCCeEEEEEcccccHHHHHHhcc-------
Q 007044 352 VIPDI--------------------------------------IRCY--SSGGRTIIFTETKESASQLADLLP------- 384 (620)
Q Consensus 352 ~l~~l--------------------------------------l~~~--~~~~~~iVF~~t~~~~~~l~~~l~------- 384 (620)
+...+ +... ...-++|+|+-+++.|+..+..+.
T Consensus 328 a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 328 ANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 11111 1111 123589999999999987776653
Q ss_pred --------------------------------------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 007044 385 --------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (620)
Q Consensus 385 --------------------------------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~ 426 (620)
.+.++|++|-+..|..+...|..|-++|++||.+++.|+|+|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 344679999999999999999999999999999999999999
Q ss_pred CccEEEE----cC----CCCCHHHHHHHhcccccCCC--ccEEEEEeCCC
Q 007044 427 DVQLIIQ----CE----PPRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (620)
Q Consensus 427 ~v~~VI~----~d----~P~s~~~yiqr~GRtgR~g~--~G~~i~l~~~~ 466 (620)
.-++|+- +| .+-++..|.|.+|||||.|. .|.+|++-.+.
T Consensus 488 artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 488 ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 8777663 22 34579999999999999997 68888885554
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=269.49 Aligned_cols=337 Identities=20% Similarity=0.292 Sum_probs=248.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEc
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (620)
++.+-..++ .|...+.++|....+..+.+ .++++|||||+|||-.+++-+++.+..+.... ........+++|++
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d--gs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED--GSVNLAPFKIVYIA 371 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc--cceecccceEEEEe
Confidence 444444443 36677999999999998866 68999999999999999999999998875421 11122345799999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCcc---CCCccEEEeccch
Q 007044 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID---LSSLKFRVLDEAD 271 (620)
Q Consensus 195 PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~---l~~l~~lVlDEah 271 (620)
|..+|+..+...|.+.....|++|.-++|......+.. .+++|+||||+.. |.+.++.-+ .+-++.+|+||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 99999999999998888889999999999876554432 3589999999987 666665332 3457899999999
Q ss_pred hhhhcCcHHHHHHHHHhcccc-----CCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 272 EMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 272 ~~l~~~f~~~l~~il~~~~~~-----~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
.+ ....++.++.|....... ..++.+.+|||+|+.. -...|+..++..+...+. ...+..+.|.++-+..
T Consensus 448 LL-hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~--syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 448 LL-HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDS--SYRPVPLKQQYIGITE 522 (1674)
T ss_pred hc-ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCc--ccCcCCccceEecccc
Confidence 55 555667777776555332 2679999999999942 233444444444333222 2334456666655443
Q ss_pred hhh--h------hhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----------------------------------
Q 007044 347 SAR--S------QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------- 384 (620)
Q Consensus 347 ~~~--~------~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~---------------------------------- 384 (620)
... . .....++..... +++|||+.+++++.+.|..++
T Consensus 523 k~~~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~d 601 (1674)
T KOG0951|consen 523 KKPLKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPD 601 (1674)
T ss_pred CCchHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChh
Confidence 222 1 234455555544 899999999988766665543
Q ss_pred -------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cCC------CCCHHHHHHHh
Q 007044 385 -------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CEP------PRDVEAYIHRS 447 (620)
Q Consensus 385 -------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d~------P~s~~~yiqr~ 447 (620)
++.++|++|+..+|..+.+.|++|.++|||+|-.+++|+|+|+-+++|- ||+ +.++.+-.||.
T Consensus 602 LkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qml 681 (1674)
T KOG0951|consen 602 LKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQML 681 (1674)
T ss_pred HHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHH
Confidence 4667899999999999999999999999999999999999998877773 554 45899999999
Q ss_pred cccccCCC--ccEEEEEeCCC
Q 007044 448 GRTGRAGN--TGVAVMLYDPR 466 (620)
Q Consensus 448 GRtgR~g~--~G~~i~l~~~~ 466 (620)
||+||.+. .|..+.+.+..
T Consensus 682 gragrp~~D~~gegiiit~~s 702 (1674)
T KOG0951|consen 682 GRAGRPQYDTCGEGIIITDHS 702 (1674)
T ss_pred hhcCCCccCcCCceeeccCch
Confidence 99999865 45556555555
No 95
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.2e-28 Score=265.37 Aligned_cols=324 Identities=22% Similarity=0.274 Sum_probs=224.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|...--.+..|+ |+.++||+|||++|.+|++.....+.. |.||+|+++||.|.+++
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~-------------VhIvT~ndyLA~RD~e~ 142 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKG-------------VHVITVNDYLARRDAEN 142 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCC-------------EEEEeCCHHHHHHHHHH
Confidence 354 78888876666666655 899999999999999999987776543 99999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC-CccC-----CCccEEEeccchhhhhc---
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NIDL-----SSLKFRVLDEADEMLRM--- 276 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~-~~~l-----~~l~~lVlDEah~~l~~--- 276 (620)
+..+..++|++|.+++++.+... +.-...+||++|||++| .|+|..+ .+.. +.+.++|+||||.||-.
T Consensus 143 m~~l~~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 143 NRPLFEFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred HHHHHHhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 99999999999999999987633 33334699999999999 8988765 3333 77899999999998721
Q ss_pred -------------CcHHHHHHHHHhcccc-----------------CCceEEeecCC--------C--------------
Q 007044 277 -------------GFVEDVELILGKVEDA-----------------NKVQTLLFSAT--------L-------------- 304 (620)
Q Consensus 277 -------------~f~~~l~~il~~~~~~-----------------~~~q~ll~SAT--------l-------------- 304 (620)
.++..+..+...+... .+.+.+-|+-. +
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 1222233322222110 01112222110 0
Q ss_pred ------ChHHHHHHH--HhcccCCcEE------EEecCcc----------------------------------------
Q 007044 305 ------PSWVKHIST--KFLKSDKKTI------DLVGNEK---------------------------------------- 330 (620)
Q Consensus 305 ------~~~~~~~~~--~~~~~~~~~i------~~~~~~~---------------------------------------- 330 (620)
..++....+ .++..+...+ .+++...
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence 001111111 1111111111 0111000
Q ss_pred ------------------------------------cccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccc
Q 007044 331 ------------------------------------MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (620)
Q Consensus 331 ------------------------------------~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~ 374 (620)
+.........++......-..++..+...+..+.++||||+|+.
T Consensus 381 Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~ 460 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIE 460 (908)
T ss_pred HHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHH
Confidence 00000001111111112223445566666678899999999999
Q ss_pred cHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC------------------------
Q 007044 375 SASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN------------------------ 426 (620)
Q Consensus 375 ~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~------------------------ 426 (620)
.++.++..|. .+..||+++++.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 461 ~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~ 538 (908)
T PRK13107 461 QSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIK 538 (908)
T ss_pred HHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHH
Confidence 9999999998 5668999999999999999999998 999999999999997
Q ss_pred -------------CccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHH
Q 007044 427 -------------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (620)
Q Consensus 427 -------------~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~ 470 (620)
+==|||--..+.|..-=-|--||+||-|.+|.+-+|++-.+..+
T Consensus 539 ~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 539 ADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 22378888999999999999999999999999999988774444
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.8e-27 Score=254.47 Aligned_cols=293 Identities=23% Similarity=0.257 Sum_probs=198.9
Q ss_pred CCCCcHHHHHHHHHHHc----CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVLD----GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~----g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
...|+|+|++++..+.. ++..++++|||+|||..++..+.. +.. .+||||||++|+.||+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~~~---------------~~Lvlv~~~~L~~Qw~ 97 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-LKR---------------STLVLVPTKELLDQWA 97 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-hcC---------------CEEEEECcHHHHHHHH
Confidence 45799999999999987 899999999999999987655543 222 2899999999999999
Q ss_pred HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHH
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 284 (620)
+.+....... -.++.+.|+..... . ..|.|+|...+...-....+....+.+||+||||++....+ ..
T Consensus 98 ~~~~~~~~~~-~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~ 165 (442)
T COG1061 98 EALKKFLLLN-DEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RR 165 (442)
T ss_pred HHHHHhcCCc-cccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HH
Confidence 7776654321 12333433332111 1 46999999998774211123344689999999999975443 34
Q ss_pred HHHhccccCCce-EEeecCCCChHH-HHHHHHhcccCCcEEEEecCcc--cccccceEEEEEeC----------------
Q 007044 285 ILGKVEDANKVQ-TLLFSATLPSWV-KHISTKFLKSDKKTIDLVGNEK--MKASTNVRHIVLPC---------------- 344 (620)
Q Consensus 285 il~~~~~~~~~q-~ll~SATl~~~~-~~~~~~~~~~~~~~i~~~~~~~--~~~~~~i~~~~~~~---------------- 344 (620)
+...+.. .. ++.||||++... ......+....+........+. ......+....+.+
T Consensus 166 ~~~~~~~---~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~ 242 (442)
T COG1061 166 ILELLSA---AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESAR 242 (442)
T ss_pred HHHhhhc---ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhh
Confidence 4444433 23 899999976432 1111111111111221111000 00000111111111
Q ss_pred ----------------------CchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhccc---chhhccccchHHHH
Q 007044 345 ----------------------SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQRE 399 (620)
Q Consensus 345 ----------------------~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~lh~~l~~~~R~ 399 (620)
....+...+..++.....+.+++|||.+...+..++..+.. +..+.|..++.+|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~ 322 (442)
T COG1061 243 FRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEERE 322 (442)
T ss_pred hhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHH
Confidence 01112223333333332467999999999999999999872 35789999999999
Q ss_pred HHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhccccc
Q 007044 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452 (620)
Q Consensus 400 ~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR 452 (620)
.+++.|+.|.+++||++.++..|+|+|+++++|......|...|+||+||.-|
T Consensus 323 ~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 323 AILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=2.8e-26 Score=256.01 Aligned_cols=320 Identities=23% Similarity=0.288 Sum_probs=249.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc----C--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLD----G--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~----g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
|+.+......+.+.--..-||-|..||..+.. + .|-++||..|-|||-+++=.++-.+..++
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK------------ 644 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK------------ 644 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC------------
Confidence 55666777777666555789999999999874 2 68999999999999999888888887654
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
+|.|||||.-||.|.++.|+.-+.+.+++|..+..-.+...+...+. ...||||||..-| +..+.+.++.
T Consensus 645 -QVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLG 718 (1139)
T COG1197 645 -QVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLG 718 (1139)
T ss_pred -eEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCC
Confidence 59999999999999999999888888999999987777666654443 4699999997544 4577899999
Q ss_pred EEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe
Q 007044 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (620)
Q Consensus 264 ~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (620)
+||+||-|++. ....+.+. .+.. +.-++-+|||.-+...+++-.-+ .+-..|...+. ....++.++.+
T Consensus 719 LlIIDEEqRFG-Vk~KEkLK----~Lr~--~VDvLTLSATPIPRTL~Msm~Gi-RdlSvI~TPP~----~R~pV~T~V~~ 786 (1139)
T COG1197 719 LLIIDEEQRFG-VKHKEKLK----ELRA--NVDVLTLSATPIPRTLNMSLSGI-RDLSVIATPPE----DRLPVKTFVSE 786 (1139)
T ss_pred eEEEechhhcC-ccHHHHHH----HHhc--cCcEEEeeCCCCcchHHHHHhcc-hhhhhccCCCC----CCcceEEEEec
Confidence 99999999873 33334444 3433 56799999997665555555444 34444433222 22334444433
Q ss_pred CCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEecc
Q 007044 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd 417 (620)
... ..+-..+++.+..+|++...+|..+..+.++..|. .+.+.||.|+..+-+++|..|-+|+++|||||.
T Consensus 787 ~d~---~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT 863 (1139)
T COG1197 787 YDD---LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT 863 (1139)
T ss_pred CCh---HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee
Confidence 322 23334455566688999999999999999888887 678899999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEcCCCC-CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 418 VAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~-s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+.+.|||||+++.+|..+.-. -.+...|--||+||..+.|+|+++|.+.
T Consensus 864 IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 864 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999999999988766554 4677788889999999999999999975
No 98
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=7.5e-27 Score=218.67 Aligned_cols=167 Identities=33% Similarity=0.530 Sum_probs=146.4
Q ss_pred cHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhc
Q 007044 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (620)
Q Consensus 133 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (620)
||+|.++++.+.+|+++++.||||+|||++|.+|+++.+..+. ..+++|++|+++|+.|+.+.+..++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----------DARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------SSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----------CceEEEEeeccccccccccccccccc
Confidence 7999999999999999999999999999999999999998752 12699999999999999999999988
Q ss_pred CCCceEEEEeCCcchH-HHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccc
Q 007044 213 AVGLTSCCLYGGAPYH-AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (620)
Q Consensus 213 ~~~~~v~~~~gg~~~~-~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~ 291 (620)
..++++..++|+.... .+...+..+++|+|+||++|.+++..+..++.++++||+||+|.+...++...+..++..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 8889999999999866 344445567999999999999999986667788999999999999988889999999998866
Q ss_pred cCCceEEeecCCCChHHHH
Q 007044 292 ANKVQTLLFSATLPSWVKH 310 (620)
Q Consensus 292 ~~~~q~ll~SATl~~~~~~ 310 (620)
..+.|++++|||++..++.
T Consensus 150 ~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 150 FKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTTSEEEEEESSSTHHHHH
T ss_pred CCCCcEEEEeeCCChhHhh
Confidence 5568999999999966654
No 99
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.9e-26 Score=239.60 Aligned_cols=302 Identities=20% Similarity=0.267 Sum_probs=208.9
Q ss_pred cHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH-Hhh
Q 007044 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYG 211 (620)
Q Consensus 133 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~ 211 (620)
+.+-.+.+..+.+++-+|+.|+||||||...---+++.-.. ...++.+..|.|--|.-++.... ..+
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~------------~~g~I~~TQPRRVAavslA~RVAeE~~ 120 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA------------SSGKIACTQPRRVAAVSLAKRVAEEMG 120 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc------------cCCcEEeecCchHHHHHHHHHHHHHhC
Confidence 33445677777888999999999999998533323322222 22238899999965555554432 222
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC--cHHHHHHHHHhc
Q 007044 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG--FVEDVELILGKV 289 (620)
Q Consensus 212 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~--f~~~l~~il~~~ 289 (620)
...|-.|+...- ........+.|.+.|.|.|++.+..+.+ |+++++|||||||+-.=.. ....+..++...
T Consensus 121 ~~lG~~VGY~IR------Fed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 121 CQLGEEVGYTIR------FEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR 193 (674)
T ss_pred CCcCceeeeEEE------ecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC
Confidence 222222222211 1111223488999999999999887665 9999999999999742100 112233333333
Q ss_pred cccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchh-hhhhHHHHHHhc--CCCCeE
Q 007044 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA-RSQVIPDIIRCY--SSGGRT 366 (620)
Q Consensus 290 ~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~l~~ll~~~--~~~~~~ 366 (620)
+ ..+++++|||+.. .....|+ .....+.+.+.. ..++.+|...+..+ ....+..+++.+ .+.+.+
T Consensus 194 ~---~LklIimSATlda---~kfS~yF-~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDI 261 (674)
T KOG0922|consen 194 P---DLKLIIMSATLDA---EKFSEYF-NNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDI 261 (674)
T ss_pred C---CceEEEEeeeecH---HHHHHHh-cCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCE
Confidence 2 5799999999986 3445566 345566554432 23455554433332 223333333322 466899
Q ss_pred EEEEcccccHHHHHHhcc--------c----chhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEc
Q 007044 367 IIFTETKESASQLADLLP--------G----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC 434 (620)
Q Consensus 367 iVF~~t~~~~~~l~~~l~--------~----~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~ 434 (620)
|||.+.+++.+.+++.|. . +.++||.|+..++.++++.-..|..+|+++|++++..|.|+++.+||.-
T Consensus 262 LvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDs 341 (674)
T KOG0922|consen 262 LVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDS 341 (674)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcC
Confidence 999999999999998886 1 3579999999999999999999999999999999999999999999975
Q ss_pred C------------------CCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 435 E------------------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 435 d------------------~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+ .|-|..+-.||+|||||.| +|.|+.+|+.+
T Consensus 342 G~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~ 390 (674)
T KOG0922|consen 342 GFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTES 390 (674)
T ss_pred CceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHH
Confidence 4 3668999999999999995 99999999977
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=243.70 Aligned_cols=327 Identities=24% Similarity=0.347 Sum_probs=240.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHH--HHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 120 LREKLKSKGIESLFPIQAMTF--DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i--~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
..-..+..|...++.||.+++ |.++.++++|..+||+.|||++.-+-++..+...+. .++.+.|-.
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr------------~~llilp~v 279 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------------NVLLILPYV 279 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh------------ceeEeccee
Confidence 334456779999999999998 678899999999999999999998888877665432 289999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc--CCccCCCccEEEeccchhhhh
Q 007044 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLR 275 (620)
Q Consensus 198 eLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~--~~~~l~~l~~lVlDEah~~l~ 275 (620)
..+..-...+..++...|+.+.+.+|..+.... ....++.|||-++-..++.+ ..-.+..+.+||+||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 999988888999999999999999877654432 23478999998876555433 122466789999999999999
Q ss_pred cCcHHHHHHHHHhcc---ccCCceEEeecCCCChHHHHHHHHhccc-----CCcEEEEecCcccccccceEEEEEeCCch
Q 007044 276 MGFVEDVELILGKVE---DANKVQTLLFSATLPSWVKHISTKFLKS-----DKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 276 ~~f~~~l~~il~~~~---~~~~~q~ll~SATl~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
.+.+..++.++.++- .....|+|.||||+|+. .+.+.++.. ....+.+...- ... ...+..
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~i--k~G----~~i~~~--- 424 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYI--KPG----SLIYES--- 424 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhcc--CCC----cccccc---
Confidence 999999998887652 11236799999999983 333334321 11111111100 000 001100
Q ss_pred hhhhhHHHH--------------------HHhcCCCCeEEEEEcccccHHHHHHhcc-----------------------
Q 007044 348 ARSQVIPDI--------------------IRCYSSGGRTIIFTETKESASQLADLLP----------------------- 384 (620)
Q Consensus 348 ~~~~~l~~l--------------------l~~~~~~~~~iVF~~t~~~~~~l~~~l~----------------------- 384 (620)
.+...+..+ -+....+.++||||+++..|+.++..+.
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 011111111 1222344579999999999988875542
Q ss_pred -------------------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEc---C-CCCCHH
Q 007044 385 -------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC---E-PPRDVE 441 (620)
Q Consensus 385 -------------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~---d-~P~s~~ 441 (620)
++.++|++++..+|+.+...|+.|.+.|++||+.++.|+++|..+++|-. + .+.+..
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~ 584 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRL 584 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhh
Confidence 45678999999999999999999999999999999999999999998863 2 345788
Q ss_pred HHHHHhcccccCCC--ccEEEEEeCCC-chHHHHH
Q 007044 442 AYIHRSGRTGRAGN--TGVAVMLYDPR-KSSVSKI 473 (620)
Q Consensus 442 ~yiqr~GRtgR~g~--~G~~i~l~~~~-~~~~~~i 473 (620)
.|.|++|||||+|- .|.+|+++.+. ...+..+
T Consensus 585 ~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 585 EYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 99999999999986 79999999988 4444433
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=5.8e-25 Score=244.26 Aligned_cols=303 Identities=21% Similarity=0.280 Sum_probs=215.8
Q ss_pred cHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH-Hhh
Q 007044 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYG 211 (620)
Q Consensus 133 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~ 211 (620)
+....+.+..+.+++-+|++|+||||||+..-..+++.... .+..+.++-|.|--|.-+++.+. .++
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~------------~~g~I~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG------------IAGKIGCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc------------cCCeEEecCchHHHHHHHHHHHHHHhC
Confidence 34455666777788899999999999999765555554432 22348889999977777776664 333
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh-hcCcH-HHHHHHHHhc
Q 007044 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFV-EDVELILGKV 289 (620)
Q Consensus 212 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l-~~~f~-~~l~~il~~~ 289 (620)
...|-.|+...-.. ......+.|-++|.|.|+..+.++.+ |+.+++||+||||+-. +..|. .-+..++...
T Consensus 120 ~~~G~~VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r 192 (845)
T COG1643 120 EKLGETVGYSIRFE------SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR 192 (845)
T ss_pred CCcCceeeEEEEee------ccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc
Confidence 33333333322221 22234588999999999999998765 9999999999999753 22221 2233444455
Q ss_pred cccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC-chh-hhhhHHHHHHhc--CCCCe
Q 007044 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-SSA-RSQVIPDIIRCY--SSGGR 365 (620)
Q Consensus 290 ~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~-~~~~l~~ll~~~--~~~~~ 365 (620)
+. ..++|+||||+.. .. ...|+ .+..++.+.+.. ..++..|.+.. ... ....+...+... ...|.
T Consensus 193 r~--DLKiIimSATld~--~r-fs~~f-~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 193 RD--DLKLIIMSATLDA--ER-FSAYF-GNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred CC--CceEEEEecccCH--HH-HHHHc-CCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCC
Confidence 43 5899999999987 23 34455 456666655432 23444442322 222 334444444433 24689
Q ss_pred EEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCC-
Q 007044 366 TIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP- 436 (620)
Q Consensus 366 ~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~- 436 (620)
+|||.+...+.+.+++.|. .+.++||.|+..++.++++.-..|..+|++||++|+.+|.||+|.+||.-+.
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~a 341 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLA 341 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcc
Confidence 9999999999998887776 3568999999999999998888888889999999999999999999998553
Q ss_pred -----------------CCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 437 -----------------PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 437 -----------------P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|.|-.+..||.|||||.+ +|+||-+|+..
T Consensus 342 k~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 342 KEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred cccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHH
Confidence 457889999999999995 99999999964
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.4e-24 Score=207.46 Aligned_cols=299 Identities=20% Similarity=0.259 Sum_probs=208.0
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
+++|.|+.+-..++ +.++.|++|-||+|||-...-.+-..+..+ .++.|.+|....|..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-------------~~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-------------GRVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-------------CeEEEecCcccchHHHHHH
Confidence 78999998876655 568999999999999986555555555544 3599999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHH
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 286 (620)
++.-+ .+..+.++||+.+..- ..+++|+|...|+..- ..++++|+||+|.+- ..--..+..-.
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP-~~~d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFP-FSDDQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhc-------cccEEEEehHHHHHHH-------hhccEEEEecccccc-ccCCHHHHHHH
Confidence 87654 4577888999875432 2789999999887753 346789999999763 22122333333
Q ss_pred HhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhh------hhHHHHHH-h
Q 007044 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS------QVIPDIIR-C 359 (620)
Q Consensus 287 ~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~l~~ll~-~ 359 (620)
+..... ..-++++|||.+... .+.........+.+...-. ..+..+..+.+.-.+..+. ..|...++ .
T Consensus 227 ~~ark~-~g~~IylTATp~k~l---~r~~~~g~~~~~klp~RfH-~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 227 KKARKK-EGATIYLTATPTKKL---ERKILKGNLRILKLPARFH-GKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred HHhhcc-cCceEEEecCChHHH---HHHhhhCCeeEeecchhhc-CCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH
Confidence 333222 457899999988743 3444433444444433221 1122222222222222222 13444443 4
Q ss_pred cCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE
Q 007044 360 YSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (620)
Q Consensus 360 ~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~ 433 (620)
...+.+++||+++....+.++..|+ .+...|+. ...|.+..++||+|++.+||+|.+++||+.+|+|+++|.
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe
Confidence 4577899999999999999999984 34456655 457888899999999999999999999999999998654
Q ss_pred c-C-CCCCHHHHHHHhcccccCCC--ccEEEEEeCCC
Q 007044 434 C-E-PPRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (620)
Q Consensus 434 ~-d-~P~s~~~yiqr~GRtgR~g~--~G~~i~l~~~~ 466 (620)
- . .-.+.++.+|.+||+||.-. .|.+++|-...
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 3 3 23678899999999999754 67776665544
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2.8e-24 Score=249.32 Aligned_cols=306 Identities=17% Similarity=0.211 Sum_probs=192.4
Q ss_pred CCCcHHHHHHHHHHH----c-CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVL----D-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il----~-g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
..++++|.+||..+. . .+.++++++||||||++++. ++.++.... ...++|+|+|+++|+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~----------~~~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK----------RFRRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC----------ccCeEEEEecHHHHHHHHH
Confidence 458999999998765 2 36799999999999988543 444444321 2347999999999999999
Q ss_pred HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC-----CccCCCccEEEeccchhhhh----
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLR---- 275 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-----~~~l~~l~~lVlDEah~~l~---- 275 (620)
+.|..+....+.....+++...... ........|+|+|...|...+... ...+..+++||+||||+-..
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 9998764322222222222111111 112335799999999997765321 24567889999999998521
Q ss_pred -----cC------cHHHHHHHHHhccccCCceEEeecCCCChHHHHHH--------------HHhccc--CCcEEEEecC
Q 007044 276 -----MG------FVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS--------------TKFLKS--DKKTIDLVGN 328 (620)
Q Consensus 276 -----~~------f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~--------------~~~~~~--~~~~i~~~~~ 328 (620)
.+ +...+..++.+.. ...|+||||.......+. ..|+-. .+..+...-.
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd----A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD----AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC----ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 11 2456677777653 367999999643221111 011100 0111110000
Q ss_pred cc---cccc----------cceEEEEEe------CCc-------hhhh-hhHHHHHHhcC--CCCeEEEEEcccccHHHH
Q 007044 329 EK---MKAS----------TNVRHIVLP------CSS-------SARS-QVIPDIIRCYS--SGGRTIIFTETKESASQL 379 (620)
Q Consensus 329 ~~---~~~~----------~~i~~~~~~------~~~-------~~~~-~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l 379 (620)
.. .... ..+....+. ... .... .++..+++.+. .++++||||.++..|+.+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 00 0000 000000000 000 0000 11222332221 237999999999999988
Q ss_pred HHhccc-------------chhhccccchHHHHHHHHHhhcCCc-eEEEecccccccCCCCCccEEEEcCCCCCHHHHHH
Q 007044 380 ADLLPG-------------ARALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445 (620)
Q Consensus 380 ~~~l~~-------------~~~lh~~l~~~~R~~~~~~F~~g~~-~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiq 445 (620)
+..|.. +..+||+++ ++..++++|+++.. +|+|+++++.+|+|+|.|++||++.++.|...|+|
T Consensus 715 ~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Q 792 (1123)
T PRK11448 715 VRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQ 792 (1123)
T ss_pred HHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHH
Confidence 877542 234677764 56789999999887 79999999999999999999999999999999999
Q ss_pred HhcccccCC
Q 007044 446 RSGRTGRAG 454 (620)
Q Consensus 446 r~GRtgR~g 454 (620)
++||+.|.-
T Consensus 793 mIGRgtR~~ 801 (1123)
T PRK11448 793 MLGRATRLC 801 (1123)
T ss_pred HHhhhccCC
Confidence 999999964
No 104
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.9e-24 Score=222.96 Aligned_cols=304 Identities=19% Similarity=0.207 Sum_probs=216.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
....-+++-.+.+.++..++-+|+.|.||||||...-..+.+.-.. ..+-++-+..|.|--|.-|+...
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-----------k~gk~IgcTQPRRVAAmSVAaRV 330 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-----------KGGKKIGCTQPRRVAAMSVAARV 330 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-----------cCCceEeecCcchHHHHHHHHHH
Confidence 3445567777888888899999999999999999533223322221 12334888899998777766544
Q ss_pred H-----HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhh-cC-cHH
Q 007044 208 D-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MG-FVE 280 (620)
Q Consensus 208 ~-----~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~-~~-f~~ 280 (620)
. +++..+|+++-. ..-....+-|-++|.|.|+..+... .+|.+++++|+||||+-.- .. ...
T Consensus 331 A~EMgvkLG~eVGYsIRF----------EdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfg 399 (902)
T KOG0923|consen 331 AEEMGVKLGHEVGYSIRF----------EDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFG 399 (902)
T ss_pred HHHhCcccccccceEEEe----------ccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHH
Confidence 3 344444444321 1112234678999999999887754 4699999999999997421 11 233
Q ss_pred HHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhh-hHHHHHHh
Q 007044 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-VIPDIIRC 359 (620)
Q Consensus 281 ~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~l~~ll~~ 359 (620)
.+..|....| ...+++.||||.. .-...|+ .+..+..+ ++. ...+..+|-.++..+-.+ ++..+++.
T Consensus 400 LvKDIar~Rp---dLKllIsSAT~DA---ekFS~fF-DdapIF~i-PGR----RyPVdi~Yt~~PEAdYldAai~tVlqI 467 (902)
T KOG0923|consen 400 LVKDIARFRP---DLKLLISSATMDA---EKFSAFF-DDAPIFRI-PGR----RYPVDIFYTKAPEADYLDAAIVTVLQI 467 (902)
T ss_pred HHHHHHhhCC---cceEEeeccccCH---HHHHHhc-cCCcEEec-cCc----ccceeeecccCCchhHHHHHHhhheee
Confidence 4455555544 5889999999986 3345566 34444443 332 234555565666555443 34444443
Q ss_pred c--CCCCeEEEEEcccccHHHHHHhcc-------------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCC
Q 007044 360 Y--SSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424 (620)
Q Consensus 360 ~--~~~~~~iVF~~t~~~~~~l~~~l~-------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlD 424 (620)
+ .+.|.+|||....++.+.....|. -+.++|+.|++..+.++++.-..|-.+|++||++|...|.
T Consensus 468 H~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlT 547 (902)
T KOG0923|consen 468 HLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLT 547 (902)
T ss_pred EeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhcee
Confidence 2 467899999999998877776664 4668999999999999999999999999999999999999
Q ss_pred CCCccEEEEcC------------------CCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 425 INDVQLIIQCE------------------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 425 i~~v~~VI~~d------------------~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|++|.+||.-+ .|.|..+-.||+|||||.| +|.|+.+|+..
T Consensus 548 IdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 548 IDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 99999999744 3567889999999999997 99999999844
No 105
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=7.3e-25 Score=231.24 Aligned_cols=306 Identities=19% Similarity=0.248 Sum_probs=201.5
Q ss_pred HHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH----HHhhc
Q 007044 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF----DVYGG 212 (620)
Q Consensus 137 ~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~----~~~~~ 212 (620)
++.+.+|..+.-+|+||.||||||...-..++++-...... ..+.-+-|.-|.|--|..++... ..++.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~-------~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~ 334 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS-------SSPGMIGITQPRRVAAIAMAKRVAFELGVLGS 334 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC-------CCCCeeeecCchHHHHHHHHHHHHHHhccCcc
Confidence 34566677778899999999999996544455544333211 11224678889997666655443 33332
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc-----CcHHHHHHHHH
Q 007044 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-----GFVEDVELILG 287 (620)
Q Consensus 213 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~-----~f~~~l~~il~ 287 (620)
. +....-|.|+ ......|.++|.|.|+..|++..+ |..++.||+||||+-.-. |....+-.+..
T Consensus 335 e--VsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 335 E--VSYQIRFDGT--------IGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred c--eeEEEEeccc--------cCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 2 2233333333 233488999999999999998654 999999999999974210 11111111211
Q ss_pred hcc----ccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch---hhhhhHHHHHHhc
Q 007044 288 KVE----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS---ARSQVIPDIIRCY 360 (620)
Q Consensus 288 ~~~----~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~l~~ll~~~ 360 (620)
... ...+...|+||||+.-.-..-.++.+...+..|.+.... ...+ | |+--..+.. .-....+.|.+.+
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ-fPVs--I-HF~krT~~DYi~eAfrKtc~IH~kL 479 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ-FPVS--I-HFNKRTPDDYIAEAFRKTCKIHKKL 479 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc-CceE--E-EeccCCCchHHHHHHHHHHHHhhcC
Confidence 111 122578999999986543333344444455566554332 1111 1 121122222 1223345555555
Q ss_pred CCCCeEEEEEcccccHHHHHHhcc--------------------------------------------------------
Q 007044 361 SSGGRTIIFTETKESASQLADLLP-------------------------------------------------------- 384 (620)
Q Consensus 361 ~~~~~~iVF~~t~~~~~~l~~~l~-------------------------------------------------------- 384 (620)
+.|.+|||+..+.+++.|+..|+
T Consensus 480 -P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~ 558 (1172)
T KOG0926|consen 480 -PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVD 558 (1172)
T ss_pred -CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhc
Confidence 66899999999999999988873
Q ss_pred -----------------------------------------------cchhhccccchHHHHHHHHHhhcCCceEEEecc
Q 007044 385 -----------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (620)
Q Consensus 385 -----------------------------------------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd 417 (620)
.+.+|++-|+...+.++++.-..|..-++|||+
T Consensus 559 ~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTN 638 (1172)
T KOG0926|consen 559 SGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATN 638 (1172)
T ss_pred ccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEecc
Confidence 122356778899999999999999999999999
Q ss_pred cccccCCCCCccEEEEcCC--------CC----------CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 418 VAARGLDINDVQLIIQCEP--------PR----------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~--------P~----------s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
||...|.||+|.+||..+. -. |..+--||+|||||.| +|.|+.||+..
T Consensus 639 VAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 639 VAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred chhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999999998553 22 4455569999999997 99999999876
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=1.7e-23 Score=238.27 Aligned_cols=316 Identities=16% Similarity=0.215 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.+.|+|.+++.+++ .|.+.|++..+|.|||+..+..+ ..+..... ....+|||||. .+..||.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~---------~~gp~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG---------ITGPHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC---------CCCCEEEEeCh-HHHHHHHHH
Confidence 78999999998875 57889999999999999754433 33322110 11137999997 677889999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHH---hcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHH
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK---LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~---l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~ 283 (620)
|.+|+. .+++..++|.......... .....+|+|+|++.+..... .+.--.+.+|||||||++-+.. ..+.
T Consensus 238 i~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Skls 311 (1033)
T PLN03142 238 IRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLS 311 (1033)
T ss_pred HHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHH
Confidence 999874 3666777765543322211 12468999999999866432 2323356899999999986432 3344
Q ss_pred HHHHhccccCCceEEeecCCCCh-HHHHH----------------------------------------HHHhc-cc---
Q 007044 284 LILGKVEDANKVQTLLFSATLPS-WVKHI----------------------------------------STKFL-KS--- 318 (620)
Q Consensus 284 ~il~~~~~~~~~q~ll~SATl~~-~~~~~----------------------------------------~~~~~-~~--- 318 (620)
..+..+.. ...+++|+|.-. ....+ ...|+ +.
T Consensus 312 kalr~L~a---~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 312 KTMRLFST---NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred HHHHHhhc---CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 55555543 457899999311 11111 00000 00
Q ss_pred ------CCcE---EEEecCcccc---------------ccc------c--------eEEEEE---------------eCC
Q 007044 319 ------DKKT---IDLVGNEKMK---------------AST------N--------VRHIVL---------------PCS 345 (620)
Q Consensus 319 ------~~~~---i~~~~~~~~~---------------~~~------~--------i~~~~~---------------~~~ 345 (620)
++.. +.+.-..... ... + ..|-++ ...
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 0000 0000000000 000 0 000000 001
Q ss_pred chhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcC---CceEEEecc
Q 007044 346 SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG---KFMTLVATN 417 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g---~~~vLvaTd 417 (620)
.+.+..+|..++... ..+.++|||+......+.|.++|. .+..+||.++..+|..+++.|+.. .+-+|++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 234455555555543 356799999999999999988875 566799999999999999999753 356789999
Q ss_pred cccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--EEEeCCC
Q 007044 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~ 466 (620)
+++.|||+..+++||+||+||++..+.|++||+.|.|+...+ +.|+...
T Consensus 549 AGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 549 AGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999999997554 5666666
No 107
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=9e-24 Score=233.47 Aligned_cols=123 Identities=24% Similarity=0.316 Sum_probs=105.2
Q ss_pred hhhhhhHHHHHH-hcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccc
Q 007044 347 SARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (620)
Q Consensus 347 ~~~~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~r 421 (620)
..+...+...+. ....+.++||||+|+..++.|+..|. .+..||+ .+.+|+..+..|+.+...|+||||+|+|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 345566666554 34567899999999999999999997 4667886 6889999999999999999999999999
Q ss_pred cCCCC---Ccc-----EEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHHH
Q 007044 422 GLDIN---DVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (620)
Q Consensus 422 GlDi~---~v~-----~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~~ 471 (620)
|+||+ +|. +||+++.|.+...|.||.|||||.|.+|.+++|++.....++
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr 716 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMR 716 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHH
Confidence 99999 554 459999999999999999999999999999999998844443
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.1e-21 Score=213.65 Aligned_cols=346 Identities=23% Similarity=0.360 Sum_probs=236.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
+..++.....|+..|+-....++.|+++-+.||||.|||. |.+.+-..+.. .+-+++||+||+.|+.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~------------kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK------------KGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh------------cCCeEEEEecCHHHHH
Confidence 3344443349999999999999999999999999999995 44443333332 2235999999999999
Q ss_pred HHHHHHHHhhcCCC-ceEEEEeCCc-chHHHHH---Hh-cCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhh
Q 007044 202 QVHEDFDVYGGAVG-LTSCCLYGGA-PYHAQEF---KL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (620)
Q Consensus 202 Qv~~~~~~~~~~~~-~~v~~~~gg~-~~~~~~~---~l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~ 275 (620)
|+++.+.+++...+ ..+..+|.+. +...... .+ ..+.||+|+|.+-|...+.. +.--+++++++|.+|.++.
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHh
Confidence 99999999986655 5555545444 4333222 22 34699999999888766552 1113688999999999875
Q ss_pred cC-----------cHHH-H------HHHHHhcc----------------------ccCCceEEeecCCCChH--HHHHHH
Q 007044 276 MG-----------FVED-V------ELILGKVE----------------------DANKVQTLLFSATLPSW--VKHIST 313 (620)
Q Consensus 276 ~~-----------f~~~-l------~~il~~~~----------------------~~~~~q~ll~SATl~~~--~~~~~~ 313 (620)
.+ |.+. + ..+...+. .....++++.|||..+. -..+.+
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 43 3221 1 11111111 11235889999997542 223334
Q ss_pred HhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcc---cccHHHHHHhcc----cc
Q 007044 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET---KESASQLADLLP----GA 386 (620)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t---~~~~~~l~~~l~----~~ 386 (620)
..+.-. .+.......|+...|... .-...+..+++.+. ..+|||++. ++.++++++.|. ++
T Consensus 298 eLlgFe-------vG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a 365 (1187)
T COG1110 298 ELLGFE-------VGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVPIDYGREKAEELAEYLRSHGINA 365 (1187)
T ss_pred HHhCCc-------cCccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEEcHHhHHHHHHHHHHHHhcCceE
Confidence 444211 111223445666666654 44455666777664 468999999 999999999998 44
Q ss_pred hhhccccchHHHHHHHHHhhcCCceEEEec----ccccccCCCCC-ccEEEEcCCC------------------------
Q 007044 387 RALHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPP------------------------ 437 (620)
Q Consensus 387 ~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT----dv~~rGlDi~~-v~~VI~~d~P------------------------ 437 (620)
..+|+ .....++.|..|++++||.. .++.||||+|. +.++|.|+.|
T Consensus 366 ~~~~a-----~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~rf~l~~~~~~~~~~l~~ls~~~ 440 (1187)
T COG1110 366 ELIHA-----EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFRFRLTLEESDPKRLLYLLSALS 440 (1187)
T ss_pred EEeec-----cchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCceeeeccccccchHHHHHHHHhhh
Confidence 55555 33778999999999999975 57899999996 8899999988
Q ss_pred --------------------------------------------------------------------------------
Q 007044 438 -------------------------------------------------------------------------------- 437 (620)
Q Consensus 438 -------------------------------------------------------------------------------- 437 (620)
T Consensus 441 ~~~~~~~~~~~~~rl~~~ir~~~~~~l~~~~~l~~~~~~~~~~~e~v~~~~~~~~e~L~~e~~~k~i~e~~~~vl~~~eg 520 (1187)
T COG1110 441 DREARSRLEGLAGRLRRIIRRLSPYSLLKLMKLKKRPDVDRHLAEEVRTLAEFVRELLKDEERVKKIAESADLVLVYEEG 520 (1187)
T ss_pred hhhhhhhhHHHHHHHHHHHhhhcHHHHHhHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCceEEEecCC
Confidence
Q ss_pred ------CCHHHHHHHhcccccC--CC--ccEEEEEeCCC---chHHHHHH-HHhCCCceeeCCCCHHHHHHHHhHH
Q 007044 438 ------RDVEAYIHRSGRTGRA--GN--TGVAVMLYDPR---KSSVSKIE-RESGVKFEHISAPQPADIAKAAGVE 499 (620)
Q Consensus 438 ------~s~~~yiqr~GRtgR~--g~--~G~~i~l~~~~---~~~~~~i~-~~~~~~~~~~~~p~~~~i~~~~~~~ 499 (620)
.++.+|+|.+|||.|. |. .|.++++++.. ....+++. ....+.|.++.--+.+++.....++
T Consensus 521 ~~yi~vPD~~TYIQaSGRtSRLyaGglTkGlSvvlvdd~~~f~~L~krm~~~~~e~e~k~l~evdL~el~reIdEd 596 (1187)
T COG1110 521 ELYLEVPDVRTYIQASGRTSRLYAGGLTKGLSVVLVDDPEVFEGLIKRMSWKFIEIEFKEISEVDLEELLREIDED 596 (1187)
T ss_pred ceEEEecChhhheeccchHhhhhccccccceEEEEecCHHHHHHHHHHHHHhhcccceeeccccCHHHHHHHHHhh
Confidence 1678999999999994 43 79999999877 33344444 4556777777777777776544433
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=1.5e-21 Score=225.57 Aligned_cols=343 Identities=18% Similarity=0.203 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~L 191 (620)
+++.+...+...||+ ++|.|.+.+. .+..++++++.||||+|||++|++|++.....+ .+++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------------~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITE-------------KPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCC-------------CeEE
Confidence 445677788888986 8899998665 455789999999999999999999998766522 1499
Q ss_pred EEcccHHHHHHHHH-HHHHhhcCCC--ceEEEEeCCcchHHH---------------H----------------------
Q 007044 192 VLLPTRELAKQVHE-DFDVYGGAVG--LTSCCLYGGAPYHAQ---------------E---------------------- 231 (620)
Q Consensus 192 il~PtreLa~Qv~~-~~~~~~~~~~--~~v~~~~gg~~~~~~---------------~---------------------- 231 (620)
|.+||++|..|+.. ++..+.+..+ ++++.+.|+.++-.- .
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el 376 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDEL 376 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhc
Confidence 99999999999865 5665554433 778888876543100 0
Q ss_pred ----------------------------------HHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC
Q 007044 232 ----------------------------------FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (620)
Q Consensus 232 ----------------------------------~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~ 277 (620)
+.....+||||+....|++.+......+....++|+||||++.+..
T Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 377 NLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred cCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHH
Confidence 0001237999999999988875544345667899999999975310
Q ss_pred -------c-----HHH----------------------------------------------------------------
Q 007044 278 -------F-----VED---------------------------------------------------------------- 281 (620)
Q Consensus 278 -------f-----~~~---------------------------------------------------------------- 281 (620)
+ ...
T Consensus 457 ~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 536 (850)
T TIGR01407 457 ENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQ 536 (850)
T ss_pred HHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0 000
Q ss_pred HHHHHHh-----------c----------c-----c--------------------cCCceEEeecCCCCh--HHHHHHH
Q 007044 282 VELILGK-----------V----------E-----D--------------------ANKVQTLLFSATLPS--WVKHIST 313 (620)
Q Consensus 282 l~~il~~-----------~----------~-----~--------------------~~~~q~ll~SATl~~--~~~~~~~ 313 (620)
+...+.. + . . .....++++|||+.. ....+.+
T Consensus 537 l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~ 616 (850)
T TIGR01407 537 LRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQ 616 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHH
Confidence 0000000 0 0 0 012477899999973 2222222
Q ss_pred HhcccCCcEEEEecCcccccccceEEEEEeCC--------chhhhh----hHHHHHHhcCCCCeEEEEEcccccHHHHHH
Q 007044 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS--------SSARSQ----VIPDIIRCYSSGGRTIIFTETKESASQLAD 381 (620)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~----~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~ 381 (620)
...-.+.....+. . .+.....-..++++.. ...... .+..++.. .++++|||++|....+.++.
T Consensus 617 ~lGl~~~~~~~~~-~-spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~--~~g~~LVlftS~~~l~~v~~ 692 (850)
T TIGR01407 617 LLGLTDVHFNTIE-P-TPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI--TSPKILVLFTSYEMLHMVYD 692 (850)
T ss_pred hcCCCccccceec-C-CCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHH
Confidence 2221111112221 0 0111011122333211 111111 22222222 45799999999999999998
Q ss_pred hccc------chhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccE--EEEcCCCCC--------------
Q 007044 382 LLPG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL--IIQCEPPRD-------------- 439 (620)
Q Consensus 382 ~l~~------~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~--VI~~d~P~s-------------- 439 (620)
.|.. ...+..+.. ..|..++++|+.|+..||+||+.+++|||+|+..+ ||...+|..
T Consensus 693 ~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~ 771 (850)
T TIGR01407 693 MLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKL 771 (850)
T ss_pred HHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHH
Confidence 8752 223333333 57899999999999999999999999999998764 666666531
Q ss_pred ----------------HHHHHHHhcccccCCCccEEEEEeCCC---chHHHHHHHHh
Q 007044 440 ----------------VEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERES 477 (620)
Q Consensus 440 ----------------~~~yiqr~GRtgR~g~~G~~i~l~~~~---~~~~~~i~~~~ 477 (620)
...+.|.+||.-|.....-++++++++ ..+-+.+.+.+
T Consensus 772 ~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 772 EQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred HHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 133468889999998765567778887 33445555443
No 110
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=209.79 Aligned_cols=308 Identities=18% Similarity=0.235 Sum_probs=210.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
..+...+..+.+.+..+..++-+|+.+.||||||....-.+++.-.. ...-+-+..|.|.-|.-++..
T Consensus 352 rq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~------------~~GmIGcTQPRRvAAiSVAkr 419 (1042)
T KOG0924|consen 352 RQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA------------DNGMIGCTQPRRVAAISVAKR 419 (1042)
T ss_pred HhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc------------cCCeeeecCchHHHHHHHHHH
Confidence 34566677888888888899999999999999999654444432222 222467788999888888776
Q ss_pred HH-HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh-hcC-cHHHHH
Q 007044 207 FD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMG-FVEDVE 283 (620)
Q Consensus 207 ~~-~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l-~~~-f~~~l~ 283 (620)
.. .++..+|-.|+.-..-.+ -....+-|-++|.|.|+....... .|.++++||+||||+-. +.. ....+.
T Consensus 420 Va~EM~~~lG~~VGYsIRFEd------vT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk 492 (1042)
T KOG0924|consen 420 VAEEMGVTLGDTVGYSIRFED------VTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLK 492 (1042)
T ss_pred HHHHhCCccccccceEEEeee------cCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHH
Confidence 64 332223322222111111 111246799999999988655433 48899999999999742 111 111222
Q ss_pred HHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhh-hhhHHHHHHhc--
Q 007044 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR-SQVIPDIIRCY-- 360 (620)
Q Consensus 284 ~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~l~~ll~~~-- 360 (620)
.++.. ..+..+|+.||||.. ..+.. |+ .+.....+.+.. ..+..++...+..+- ..++...+..+
T Consensus 493 ~~lar---RrdlKliVtSATm~a--~kf~n-fF-gn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~ 560 (1042)
T KOG0924|consen 493 KVLAR---RRDLKLIVTSATMDA--QKFSN-FF-GNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLS 560 (1042)
T ss_pred HHHHh---hccceEEEeeccccH--HHHHH-Hh-CCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeecc
Confidence 23322 236899999999986 34444 44 344444444322 233334433333222 22333443332
Q ss_pred CCCCeEEEEEcccccHHHHHHhcc--------------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 007044 361 SSGGRTIIFTETKESASQLADLLP--------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (620)
Q Consensus 361 ~~~~~~iVF~~t~~~~~~l~~~l~--------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~ 426 (620)
...|.+|||...+++.+..+..+. .+..+++.|++.-+.++++.-..|..+++|||++|+..|.||
T Consensus 561 ~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 561 GPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeec
Confidence 245789999999998887776654 466789999999999999999999999999999999999999
Q ss_pred CccEEEEcC------------------CCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 427 DVQLIIQCE------------------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 427 ~v~~VI~~d------------------~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
++.+||..+ .|.|-..-.||+|||||.| +|.|+.+|+..
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 999999855 4678888899999999996 99999999975
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=7.2e-22 Score=218.82 Aligned_cols=125 Identities=29% Similarity=0.413 Sum_probs=109.3
Q ss_pred hhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCC
Q 007044 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (620)
Q Consensus 350 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi 425 (620)
..++..+......+.++||||+|+..++.|+..|. .+..+||++++.+|..++..|+.|.+.|||||+++++|+|+
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDi 508 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL 508 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeee
Confidence 34555555555678899999999999999999997 56679999999999999999999999999999999999999
Q ss_pred CCccEEEEcC-----CCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHH
Q 007044 426 NDVQLIIQCE-----PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (620)
Q Consensus 426 ~~v~~VI~~d-----~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (620)
|++++||++| .|.+..+|+||+|||||. ..|.+++|++.. ......|+.
T Consensus 509 P~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 509 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999988 899999999999999998 689999999976 444444443
No 112
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.89 E-value=4.9e-22 Score=219.96 Aligned_cols=324 Identities=21% Similarity=0.285 Sum_probs=226.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 118 VPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
....+.+..+.-...+..+...+..+.+++.+++.|.||+|||......+++...... ...++++..|.|
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQPRR 229 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQPRR 229 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCCch
Confidence 3344444444444557788888899999999999999999999987777777765542 233489999999
Q ss_pred HHHHHHHHHHH-HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh-h
Q 007044 198 ELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-R 275 (620)
Q Consensus 198 eLa~Qv~~~~~-~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l-~ 275 (620)
--|.-+++... ..+...|-.|+.-.+..+. ......+++||.|.|++.+..+ -.+.++.+||+||+|+-. +
T Consensus 230 IsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~ 302 (924)
T KOG0920|consen 230 ISAISVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSIN 302 (924)
T ss_pred HHHHHHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCC
Confidence 88888887764 2333344444443333221 1224789999999999999874 458999999999999753 2
Q ss_pred cCcHHHH-HHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCccccc--------------ccceEEE
Q 007044 276 MGFVEDV-ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA--------------STNVRHI 340 (620)
Q Consensus 276 ~~f~~~l-~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------~~~i~~~ 340 (620)
..|.-.+ ..++... +..++++||||+.. +....|+ .....+.+.+...... .....+.
T Consensus 303 ~DflLi~lk~lL~~~---p~LkvILMSAT~da---e~fs~YF-~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~ 375 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRN---PDLKVILMSATLDA---ELFSDYF-GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR 375 (924)
T ss_pred cccHHHHHHHHhhhC---CCceEEEeeeecch---HHHHHHh-CCCceEeecCCCcchHHHHHHHHHHHhcccccccccc
Confidence 2333322 3333332 47899999999984 4456666 3555555443321000 0000011
Q ss_pred EEe------------CCchhhhhhHHHHHHhc---CCCCeEEEEEcccccHHHHHHhcc-----------cchhhccccc
Q 007044 341 VLP------------CSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP-----------GARALHGDIQ 394 (620)
Q Consensus 341 ~~~------------~~~~~~~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~-----------~~~~lh~~l~ 394 (620)
... ....-...++..++... ...|.+|||.++..+...+.+.|. .+.++|+.|+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~ 455 (924)
T KOG0920|consen 376 SGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIP 455 (924)
T ss_pred cccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCC
Confidence 000 00112334455554433 346899999999999999999885 3557999999
Q ss_pred hHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEc--------CCCC----------CHHHHHHHhcccccCCCc
Q 007044 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC--------EPPR----------DVEAYIHRSGRTGRAGNT 456 (620)
Q Consensus 395 ~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~--------d~P~----------s~~~yiqr~GRtgR~g~~ 456 (620)
..++..++.....|..+|++||++|+.+|.|++|-+||+. |+-. +...-.||.|||||. ++
T Consensus 456 s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~ 534 (924)
T KOG0920|consen 456 SEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RP 534 (924)
T ss_pred hHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cC
Confidence 9999999999999999999999999999999999999974 4332 455668999999999 79
Q ss_pred cEEEEEeCCC
Q 007044 457 GVAVMLYDPR 466 (620)
Q Consensus 457 G~~i~l~~~~ 466 (620)
|.|+.+|+..
T Consensus 535 G~cy~L~~~~ 544 (924)
T KOG0920|consen 535 GICYHLYTRS 544 (924)
T ss_pred CeeEEeechh
Confidence 9999999876
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=1.5e-21 Score=221.13 Aligned_cols=323 Identities=21% Similarity=0.242 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHHcC---C-cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLDG---S-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g---~-dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.+++.|..++..++.. . .+++.||||+|||.+.+.+++..+.... ....+++++.|+|.+..++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---------~~~~r~i~vlP~~t~ie~~~~r 265 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---------KLKSRVIYVLPFRTIIEDMYRR 265 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---------cccceEEEEccHHHHHHHHHHH
Confidence 3489999999887743 4 7999999999999999999988777631 1456799999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHH-----h---------cCCCcEEEeChHHHHHHHhc-CCcc-C--CCccEEEec
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK-----L---------KKGIDVVIGTPGRIKDHIER-GNID-L--SSLKFRVLD 268 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~-----l---------~~~~~IlV~Tp~rl~~~l~~-~~~~-l--~~l~~lVlD 268 (620)
+..+....++......|.......... . .....+.++||-.+...... .... + =..+.+|||
T Consensus 266 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlD 345 (733)
T COG1203 266 AKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILD 345 (733)
T ss_pred HHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhc
Confidence 988765543333212222211111000 0 01244556666555442221 1111 1 123679999
Q ss_pred cchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchh
Q 007044 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (620)
Q Consensus 269 Eah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 348 (620)
|+|.+.+......+..++..+... +..++++|||+|+........++....................+.+....+....
T Consensus 346 E~h~~~~~~~~~~l~~~i~~l~~~-g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 424 (733)
T COG1203 346 EVHLYADETMLAALLALLEALAEA-GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDG 424 (733)
T ss_pred cHHhhcccchHHHHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhh
Confidence 999887653344445555544432 5689999999999988888877743332222111000000001111100000000
Q ss_pred -hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc---c-chhhccccchHHHHHHHHHhh----cCCceEEEecccc
Q 007044 349 -RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G-ARALHGDIQQSQREVTLAGFR----SGKFMTLVATNVA 419 (620)
Q Consensus 349 -~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~---~-~~~lh~~l~~~~R~~~~~~F~----~g~~~vLvaTdv~ 419 (620)
.......+......+.+++|.|||+..|.+++..|+ . +..+||.+....|.+.++.++ .+...|+|||.|.
T Consensus 425 ~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVI 504 (733)
T COG1203 425 PQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVI 504 (733)
T ss_pred hhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEE
Confidence 013344455556678999999999999999999998 3 788999999999988877544 5778999999999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCC--CccEEEEEeCCC
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--NTGVAVMLYDPR 466 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g--~~G~~i~l~~~~ 466 (620)
+.|+|+. .+++|-= +....+.+||+||++|-| ..|..+.+....
T Consensus 505 EagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 505 EAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 9999995 7776653 444889999999999999 567777776655
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.3e-20 Score=210.43 Aligned_cols=135 Identities=27% Similarity=0.387 Sum_probs=114.9
Q ss_pred hhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCC
Q 007044 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (620)
Q Consensus 350 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi 425 (620)
..++..+......+.++||||+|+..++.|+..|. .+..+||++++.+|..++..|+.|.+.|||||+++++|+|+
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl 512 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI 512 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc
Confidence 34455555555577899999999999999999998 56679999999999999999999999999999999999999
Q ss_pred CCccEEEEcCC-----CCCHHHHHHHhcccccCCCccEEEEEeCCC----------chHHHHHHHHhCCCceeeC
Q 007044 426 NDVQLIIQCEP-----PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR----------KSSVSKIERESGVKFEHIS 485 (620)
Q Consensus 426 ~~v~~VI~~d~-----P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~----------~~~~~~i~~~~~~~~~~~~ 485 (620)
|++++||++|. |.+..+|+||+|||||. ..|.|++|++.. ....+.++...+.+...++
T Consensus 513 p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 99999999884 78999999999999996 799999999842 4556667777776655444
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=8.6e-21 Score=193.83 Aligned_cols=163 Identities=24% Similarity=0.312 Sum_probs=128.3
Q ss_pred CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEccc
Q 007044 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (620)
Q Consensus 294 ~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~ 373 (620)
..|+++.|||..++-.... ....+.-.-.......+ .+.+........+++..+......+.++||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s------~~~vveQiIRPTGLlDP---~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS------GGNVVEQIIRPTGLLDP---EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhc------cCceeEEeecCCCCCCC---ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 3699999999877544332 22222211111111111 12233444556677777777777889999999999
Q ss_pred ccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcC-----CCCCHHHHH
Q 007044 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE-----PPRDVEAYI 444 (620)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d-----~P~s~~~yi 444 (620)
+.|+.|.++|. ++..+|+++..-+|..++..+|.|.++|||.-+.+-.|||+|.|++|..+| +.+|-.+.+
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 99999999998 788999999999999999999999999999999999999999999999877 567999999
Q ss_pred HHhcccccCCCccEEEEEeCCC
Q 007044 445 HRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 445 qr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|-+|||+|. -.|.+|++.+.-
T Consensus 537 QtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchhh
Confidence 999999997 589999988765
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.6e-20 Score=203.38 Aligned_cols=317 Identities=24% Similarity=0.344 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHHcC----CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..+.+-|+.++..+... +-.++.+.||||||-+|+-.+...+..++ ++|||+|-..|..|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------------qvLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------------QVLVLVPEIALTPQLLA 263 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------------EEEEEeccccchHHHHH
Confidence 35678899999998755 67999999999999999988888888765 49999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcc----hHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc---C-
Q 007044 206 DFDVYGGAVGLTSCCLYGGAP----YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM---G- 277 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~----~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~---~- 277 (620)
.|+..+. .++..++++.+ +..+.+.......|||||-..+ ...+.++.+||+||=|.-.-. +
T Consensus 264 rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 264 RFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCC
Confidence 9986543 55666666554 4445555567899999997776 446889999999999964311 1
Q ss_pred --cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhh-----h
Q 007044 278 --FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR-----S 350 (620)
Q Consensus 278 --f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-----~ 350 (620)
...++.....+.. ++++++-|||..-+-...+ .......+.+...........+.-+......... .
T Consensus 334 rYhARdvA~~Ra~~~---~~pvvLgSATPSLES~~~~---~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 334 RYHARDVAVLRAKKE---NAPVVLGSATPSLESYANA---ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred CcCHHHHHHHHHHHh---CCCEEEecCCCCHHHHHhh---hcCceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 3455555555554 5789999999655433322 2223444544443321112333322222211111 3
Q ss_pred hhHHHHHHhcCCCCeEEEEEcccccH------------------------------------------------------
Q 007044 351 QVIPDIIRCYSSGGRTIIFTETKESA------------------------------------------------------ 376 (620)
Q Consensus 351 ~~l~~ll~~~~~~~~~iVF~~t~~~~------------------------------------------------------ 376 (620)
.++..+-+.+..+.++|+|.|.+--+
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 44555555666788899998854332
Q ss_pred ----------HHHHHhcc--cchhhccccchHH--HHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCC------
Q 007044 377 ----------SQLADLLP--GARALHGDIQQSQ--REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP------ 436 (620)
Q Consensus 377 ----------~~l~~~l~--~~~~lh~~l~~~~--R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~------ 436 (620)
+.|...|. .+..+.+|..... -+..+..|.+|+.+|||.|.+++.|.|+|++++|.-.|.
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 33333333 2333445554433 367799999999999999999999999999999765443
Q ss_pred C------CCHHHHHHHhcccccCCCccEEEEE-eCCCchHHHHHHH
Q 007044 437 P------RDVEAYIHRSGRTGRAGNTGVAVML-YDPRKSSVSKIER 475 (620)
Q Consensus 437 P------~s~~~yiqr~GRtgR~g~~G~~i~l-~~~~~~~~~~i~~ 475 (620)
| +...-+.|-+||+||++.+|.+++- +.|+...+..+..
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 2 2456778899999999999988654 5555555655543
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=7.5e-20 Score=197.39 Aligned_cols=323 Identities=19% Similarity=0.213 Sum_probs=214.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|.-+.-.++.|+ |+...||+|||++..+|++.....+.. +.|++||.-||.|-+++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~-------------VhvvT~NdyLA~RDae~ 138 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRR-------------VHVITVNDYLARRDAEW 138 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCC-------------eEEEcCCHHHHHHHHHH
Confidence 354 89999999998888875 779999999999999999888777654 99999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhc------CCccCCCccEEEeccchhhhh----
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEMLR---- 275 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~------~~~~l~~l~~lVlDEah~~l~---- 275 (620)
+..+...+|++|+++.++.+.......+ .+||+++|..-+ .|+|+. +....+.+.+.|+||+|.||-
T Consensus 139 m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeAr 216 (764)
T PRK12326 139 MGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEAL 216 (764)
T ss_pred HHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheecccc
Confidence 9999999999999999988765433333 599999998765 333322 223356788999999999861
Q ss_pred -----------cCcHHHHHHHHHhccccC------CceEE----------------------------------------
Q 007044 276 -----------MGFVEDVELILGKVEDAN------KVQTL---------------------------------------- 298 (620)
Q Consensus 276 -----------~~f~~~l~~il~~~~~~~------~~q~l---------------------------------------- 298 (620)
...+..+..+...+.... +.+.+
T Consensus 217 tPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 217 VPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred CceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHH
Confidence 013333444444433210 11112
Q ss_pred ----------------------------------------------------------------------eecCCCChHH
Q 007044 299 ----------------------------------------------------------------------LFSATLPSWV 308 (620)
Q Consensus 299 ----------------------------------------------------------------------l~SATl~~~~ 308 (620)
.||+|.....
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 2222221111
Q ss_pred HHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcccc--
Q 007044 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA-- 386 (620)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-- 386 (620)
..+.+.|- -..+.+ +...+.........++.........++..+...+..+.|+||.|.|....+.|+..|...
T Consensus 377 ~Ef~~iY~---l~Vv~I-Ptnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI 452 (764)
T PRK12326 377 EQLRQFYD---LGVSVI-PPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGV 452 (764)
T ss_pred HHHHHHhC---CcEEEC-CCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCC
Confidence 11111110 001100 000011111111122222222223455566667778999999999999999999999843
Q ss_pred --hhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC---------------CccEEEEcCCCCCHHHHHHHhcc
Q 007044 387 --RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---------------DVQLIIQCEPPRDVEAYIHRSGR 449 (620)
Q Consensus 387 --~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~---------------~v~~VI~~d~P~s~~~yiqr~GR 449 (620)
..|++.-...+-.-+-+.=+.| .|.|||++|+||.||. +==|||-...|.|..---|-.||
T Consensus 453 ~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGR 530 (764)
T PRK12326 453 PAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGR 530 (764)
T ss_pred cceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcc
Confidence 3455543333322233333444 6899999999999987 23479999999999999999999
Q ss_pred cccCCCccEEEEEeCCCchHHHHH
Q 007044 450 TGRAGNTGVAVMLYDPRKSSVSKI 473 (620)
Q Consensus 450 tgR~g~~G~~i~l~~~~~~~~~~i 473 (620)
+||-|.+|.+-+|++-.+..++.+
T Consensus 531 aGRQGDpGss~f~lSleDdl~~~f 554 (764)
T PRK12326 531 AGRQGDPGSSVFFVSLEDDVVAAN 554 (764)
T ss_pred cccCCCCCceeEEEEcchhHHHhc
Confidence 999999999999998875555544
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.4e-19 Score=199.99 Aligned_cols=325 Identities=22% Similarity=0.304 Sum_probs=208.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.| ..|+++|...--.+..|+ |+...||+|||+++.+|++.....+.. |.|++||.-||.|-+++
T Consensus 79 lG-m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~-------------VhvvT~ndyLA~RD~e~ 142 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKG-------------VHVVTVNDYLARRDANW 142 (913)
T ss_pred hC-CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCC-------------EEEEeCCHHHHHHHHHH
Confidence 46 488899987766666655 889999999999999999877776643 99999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhhh----
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l~---- 275 (620)
+..+...+|++|+++.++.+.......+ .+||++||..-+ .|+|+.+ ....+.+.++|+||+|.+|=
T Consensus 143 m~~l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 143 MRPLYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred HHHHhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 9999999999999999887765444333 399999999886 4444332 12247899999999999861
Q ss_pred ------------cCcHHHHHHHHHhcccc-----------------CCceEEeecCC-------------C-Ch------
Q 007044 276 ------------MGFVEDVELILGKVEDA-----------------NKVQTLLFSAT-------------L-PS------ 306 (620)
Q Consensus 276 ------------~~f~~~l~~il~~~~~~-----------------~~~q~ll~SAT-------------l-~~------ 306 (620)
...+..+..+...+... .+.+.+.++-. + +.
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 01222333333333110 00111111100 0 00
Q ss_pred -----HHHH----H-HHHhcccCCcEE------EEecCc-----------------------------------------
Q 007044 307 -----WVKH----I-STKFLKSDKKTI------DLVGNE----------------------------------------- 329 (620)
Q Consensus 307 -----~~~~----~-~~~~~~~~~~~i------~~~~~~----------------------------------------- 329 (620)
+... + +..++..+...| .+++..
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence 0000 0 111111111111 011100
Q ss_pred -----------------------------------ccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccc
Q 007044 330 -----------------------------------KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (620)
Q Consensus 330 -----------------------------------~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~ 374 (620)
.+.........++......-..++..+...+..+.|+||-|.|..
T Consensus 381 Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred HHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 000001111111222222223455666667778999999999999
Q ss_pred cHHHHHHhcccch----hhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC------------------------
Q 007044 375 SASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN------------------------ 426 (620)
Q Consensus 375 ~~~~l~~~l~~~~----~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~------------------------ 426 (620)
..+.|+..|.... +|++.-...+-+-+-+.=+.| .|.|||++|+||.||.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999999998433 455554333333333333344 6899999999999995
Q ss_pred -------------CccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHHH
Q 007044 427 -------------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (620)
Q Consensus 427 -------------~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~~ 471 (620)
+==|||--..|.|..-=-|--||+||-|.+|.+-+|++-.+..++
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr 596 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMR 596 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 233788889999999999999999999999999988887744443
No 119
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.6e-20 Score=187.70 Aligned_cols=318 Identities=19% Similarity=0.222 Sum_probs=218.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
.+.|...+.++...+.|+++--..-+..+.+.+..+.+++-+++.|.||||||...--..+.......
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~------------ 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL------------ 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc------------
Confidence 57789999999999999988766677777888888889999999999999999875555555544432
Q ss_pred CeEEEEcccHHHHHHHHHHHH-----HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 188 PSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~-----~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
..+.+..|.|.-|.+++.... .++...|+++-. ..-...++=.-+||.|.|+.......+ +..+
T Consensus 92 ~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrf----------EdC~~~~T~Lky~tDgmLlrEams~p~-l~~y 160 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRF----------EDCTSPNTLLKYCTDGMLLREAMSDPL-LGRY 160 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHhccccchhccccccc----------cccCChhHHHHHhcchHHHHHHhhCcc-cccc
Confidence 137888999977777665442 233333332210 000000112335888888777666554 8899
Q ss_pred cEEEeccchhhhhc--CcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEE
Q 007044 263 KFRVLDEADEMLRM--GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (620)
Q Consensus 263 ~~lVlDEah~~l~~--~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 340 (620)
++||+||||+-.-. -....+..++...+ ..+++++|||+.. .-.+.|+ .+...+.+.+ ...+..+
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~rp---dLk~vvmSatl~a---~Kfq~yf-~n~Pll~vpg------~~PvEi~ 227 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNRP---DLKLVVMSATLDA---EKFQRYF-GNAPLLAVPG------THPVEIF 227 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhCC---CceEEEeecccch---HHHHHHh-CCCCeeecCC------CCceEEE
Confidence 99999999974211 11222334443333 6899999999865 3345566 4666666543 1234455
Q ss_pred EEeCCchhhhhh-HHHHHHhc--CCCCeEEEEEcccccHHHHHHhcc-------------cchhhccccchHHHHHHHHH
Q 007044 341 VLPCSSSARSQV-IPDIIRCY--SSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAG 404 (620)
Q Consensus 341 ~~~~~~~~~~~~-l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~-------------~~~~lh~~l~~~~R~~~~~~ 404 (620)
|.+....+..+. +..+++.+ ...|.+|||....++.+..++.+. .+.++| +.++.++++.
T Consensus 228 Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep 303 (699)
T KOG0925|consen 228 YTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEP 303 (699)
T ss_pred ecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCC
Confidence 655555544443 33444332 356889999999999988887765 455666 5555555544
Q ss_pred hhc---C--CceEEEecccccccCCCCCccEEEEcC------------------CCCCHHHHHHHhcccccCCCccEEEE
Q 007044 405 FRS---G--KFMTLVATNVAARGLDINDVQLIIQCE------------------PPRDVEAYIHRSGRTGRAGNTGVAVM 461 (620)
Q Consensus 405 F~~---g--~~~vLvaTdv~~rGlDi~~v~~VI~~d------------------~P~s~~~yiqr~GRtgR~g~~G~~i~ 461 (620)
... | ..+|+|+|+++...+.+++|.+||.-+ -|.|..+-.||.||+||. ++|.|+.
T Consensus 304 ~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfr 382 (699)
T KOG0925|consen 304 APEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 382 (699)
T ss_pred CCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEE
Confidence 432 2 358999999999999999999999855 367889999999999998 7999999
Q ss_pred EeCCC
Q 007044 462 LYDPR 466 (620)
Q Consensus 462 l~~~~ 466 (620)
+|+..
T Consensus 383 LYte~ 387 (699)
T KOG0925|consen 383 LYTEE 387 (699)
T ss_pred eecHH
Confidence 99865
No 120
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=3.3e-19 Score=170.62 Aligned_cols=179 Identities=41% Similarity=0.620 Sum_probs=149.5
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
..++..|+++|.++++.++.+ +.++++++||||||.+++.+++..+.... ..++||++||+.++.|+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----------GKRVLVLVPTRELAEQWA 71 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------CCcEEEEeCCHHHHHHHH
Confidence 357889999999999999988 99999999999999999999998887642 224999999999999999
Q ss_pred HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCC-cEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHH
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI-DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~-~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~ 283 (620)
..+..++..........+++.........+..+. +|+++|++.+.+.+.........++++|+||||.+....+...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 151 (201)
T smart00487 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLE 151 (201)
T ss_pred HHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHH
Confidence 9998887655445556666666445555555555 999999999999998877778889999999999997657888888
Q ss_pred HHHHhccccCCceEEeecCCCChHHHHHHHHhcc
Q 007044 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317 (620)
Q Consensus 284 ~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~ 317 (620)
.++..++. ..+++++|||++.........++.
T Consensus 152 ~~~~~~~~--~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 152 KLLKLLPK--NVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHHhCCc--cceEEEEecCCchhHHHHHHHhcC
Confidence 99888844 678999999999888888888874
No 121
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.82 E-value=1.2e-18 Score=184.42 Aligned_cols=326 Identities=19% Similarity=0.261 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.++++|.+.+.++. +|-+.|+....|-|||+.- +.++..+..... ..+| -||+||...|.+ |.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~--------~~GP-fLVi~P~StL~N-W~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG--------IPGP-FLVIAPKSTLDN-WMNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC--------CCCC-eEEEeeHhhHHH-HHHH
Confidence 78999999998865 6889999999999999863 233333332111 1233 599999988876 5677
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHH---hcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHH
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK---LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~---l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~ 283 (620)
|.+|+. ++++.+++|.......... .....+|+|+|++..+.- +..+.--+++|+|+||||++-+.. ..+.
T Consensus 236 f~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~ 309 (971)
T KOG0385|consen 236 FKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLS 309 (971)
T ss_pred HHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHH
Confidence 888874 5888889988754433221 234789999999988654 223334457899999999997654 3455
Q ss_pred HHHHhccccCCceEEeecCCCCh-HHH------------------HHHHH----------------------hcc-----
Q 007044 284 LILGKVEDANKVQTLLFSATLPS-WVK------------------HISTK----------------------FLK----- 317 (620)
Q Consensus 284 ~il~~~~~~~~~q~ll~SATl~~-~~~------------------~~~~~----------------------~~~----- 317 (620)
.+++.+.. ...+++++|.-. .+. .+... |+-
T Consensus 310 ~~lr~f~~---~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~ 386 (971)
T KOG0385|consen 310 KILREFKT---DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKS 386 (971)
T ss_pred HHHHHhcc---cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHH
Confidence 66666654 356788888210 000 00000 000
Q ss_pred ------cCCcEEEEecCcc---------------------c------------ccccceEEEEE---------------e
Q 007044 318 ------SDKKTIDLVGNEK---------------------M------------KASTNVRHIVL---------------P 343 (620)
Q Consensus 318 ------~~~~~i~~~~~~~---------------------~------------~~~~~i~~~~~---------------~ 343 (620)
.+...+.+..+.. . .....+.|-|+ .
T Consensus 387 dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 387 DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 0000000000000 0 00000011110 0
Q ss_pred CCchhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcC---CceEEEe
Q 007044 344 CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG---KFMTLVA 415 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g---~~~vLva 415 (620)
+..+.|..+|..+|..+ ..|.++|||.+.....+-|.+++. ....+.|.++..+|...++.|... .+-+|++
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 12355667777777654 467899999999888888877765 566789999999999999999764 4667899
Q ss_pred cccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCcc--EEEEEeCCC---chHHHHHHHH
Q 007044 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR---KSSVSKIERE 476 (620)
Q Consensus 416 Tdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G--~~i~l~~~~---~~~~~~i~~~ 476 (620)
|-+.+-|||+...++||.||-.|+|..-.|..-||.|.|+.. .++.|++.. ...+.+-+..
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999854 457788877 3334444443
No 122
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=2.1e-19 Score=194.04 Aligned_cols=159 Identities=19% Similarity=0.115 Sum_probs=114.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.|-.||.+.+..+-.+..+++.|||.+|||++-...+=..+..... --+|+++||.+|++|+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~-----------~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-----------DVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC-----------CEEEEecchHHHhhhhhHHHHHh
Confidence 5778999999999999999999999999999755444444443322 23899999999999998887654
Q ss_pred hcC-CCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc---CCccCCCccEEEeccchhhhhcCcHHHHHHHH
Q 007044 211 GGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER---GNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 211 ~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~---~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 286 (620)
... +-.+...+.|.....-+.. .-.|+|+|+-|+-+-.+|.. ...+...++++|+||+|.+.++.-.--++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 422 2223333334332221111 22599999999999888876 34568899999999999987665444456666
Q ss_pred HhccccCCceEEeecCCCCh
Q 007044 287 GKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 287 ~~~~~~~~~q~ll~SATl~~ 306 (620)
..+ ++.++.+|||+.+
T Consensus 658 ~li----~CP~L~LSATigN 673 (1330)
T KOG0949|consen 658 LLI----PCPFLVLSATIGN 673 (1330)
T ss_pred Hhc----CCCeeEEecccCC
Confidence 555 4689999999866
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=3e-18 Score=195.49 Aligned_cols=328 Identities=19% Similarity=0.229 Sum_probs=201.7
Q ss_pred HCCCCCCcHHHHHHHHH----HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 126 SKGIESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~----il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
-.|| ++++-|.+.... +..++.+++.|+||||||++|++|++.... +.+++|++||++|+.
T Consensus 241 ~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------------~~~vvI~t~T~~Lq~ 305 (820)
T PRK07246 241 LLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------------QRQIIVSVPTKILQD 305 (820)
T ss_pred cCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------------CCcEEEEeCcHHHHH
Confidence 3455 689999985444 346788999999999999999999887541 235999999999999
Q ss_pred HH-HHHHHHhhcCCCceEEEEeCCcchHHHH-------------------------------------------------
Q 007044 202 QV-HEDFDVYGGAVGLTSCCLYGGAPYHAQE------------------------------------------------- 231 (620)
Q Consensus 202 Qv-~~~~~~~~~~~~~~v~~~~gg~~~~~~~------------------------------------------------- 231 (620)
|+ .+.+..+....++++.++.|+.++-...
T Consensus 306 Ql~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~ 385 (820)
T PRK07246 306 QIMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQ 385 (820)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHH
Confidence 99 5778877777788888888775432110
Q ss_pred ----------------------HHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC-----c------
Q 007044 232 ----------------------FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----F------ 278 (620)
Q Consensus 232 ----------------------~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~-----f------ 278 (620)
+.-...+||||+...-|+.++..+.. +...+++||||||++.+.. .
T Consensus 386 i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~ 464 (820)
T PRK07246 386 LKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITS 464 (820)
T ss_pred hhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHH
Confidence 00011379999999988887755443 6789999999999975321 0
Q ss_pred -HHHH-------------------------------------------------------------HHHHHhcc------
Q 007044 279 -VEDV-------------------------------------------------------------ELILGKVE------ 290 (620)
Q Consensus 279 -~~~l-------------------------------------------------------------~~il~~~~------ 290 (620)
...+ ..++..-.
T Consensus 465 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e 544 (820)
T PRK07246 465 FLQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLE 544 (820)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 0000 00000000
Q ss_pred c-------------------------cCCceEEeecCCCC--hHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe
Q 007044 291 D-------------------------ANKVQTLLFSATLP--SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (620)
Q Consensus 291 ~-------------------------~~~~q~ll~SATl~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 343 (620)
. .....++++||||+ +.. .+...+--.......+ . .....-..++++
T Consensus 545 ~~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~-~----~~~~~~~~~~i~ 618 (820)
T PRK07246 545 SEKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKI-E----KDKKQDQLVVVD 618 (820)
T ss_pred ecCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecC-C----CChHHccEEEeC
Confidence 0 00246788899985 222 2322221111111111 0 000111112221
Q ss_pred --CC------chhhhhhHHHHH-HhcCCCCeEEEEEcccccHHHHHHhcccc---hhhccccchHHHHHHHHHhhcCCce
Q 007044 344 --CS------SSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFM 411 (620)
Q Consensus 344 --~~------~~~~~~~l~~ll-~~~~~~~~~iVF~~t~~~~~~l~~~l~~~---~~lh~~l~~~~R~~~~~~F~~g~~~ 411 (620)
.+ .......+...+ .....+++++|+++|.+..+.++..|... ....|.- ..|.+++++|+.+.-.
T Consensus 619 ~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~--~~~~~l~~~F~~~~~~ 696 (820)
T PRK07246 619 QDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKN--GTAYNIKKRFDRGEQQ 696 (820)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCC--ccHHHHHHHHHcCCCe
Confidence 11 111121222222 22235689999999999999998887521 1122311 1356789999998889
Q ss_pred EEEecccccccCCCCC--ccEEEEcCCCC----C--------------------------HHHHHHHhcccccCCCccEE
Q 007044 412 TLVATNVAARGLDIND--VQLIIQCEPPR----D--------------------------VEAYIHRSGRTGRAGNTGVA 459 (620)
Q Consensus 412 vLvaTdv~~rGlDi~~--v~~VI~~d~P~----s--------------------------~~~yiqr~GRtgR~g~~G~~ 459 (620)
||++|..+.+|||+|+ ...||...+|. + ...+.|.+||.-|....--+
T Consensus 697 vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv 776 (820)
T PRK07246 697 ILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA 776 (820)
T ss_pred EEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE
Confidence 9999999999999974 45566655552 1 23456889999998764336
Q ss_pred EEEeCCC---chHHHHHHHHh
Q 007044 460 VMLYDPR---KSSVSKIERES 477 (620)
Q Consensus 460 i~l~~~~---~~~~~~i~~~~ 477 (620)
+.+++++ ..+-+.+.+.+
T Consensus 777 v~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 777 VLILDRRILTKSYGKQILASL 797 (820)
T ss_pred EEEECCcccccHHHHHHHHhC
Confidence 7778877 34455555544
No 124
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=4e-18 Score=181.44 Aligned_cols=323 Identities=17% Similarity=0.265 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCC-CCCCcccCCCCCCC
Q 007044 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNG-PTKASKKTGYGRAP 188 (620)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~-~~~~~~~~~~~~~~ 188 (620)
|.++..+. ..++|+|+..+.++. ++.--|+-...|-|||..-+.. |..|... ... -
T Consensus 196 ~~vPg~I~--------~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisF-LaaL~~S~k~~----------~ 256 (923)
T KOG0387|consen 196 FKVPGFIW--------SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISF-LAALHHSGKLT----------K 256 (923)
T ss_pred ccccHHHH--------HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHH-HHHHhhccccc----------C
Confidence 55555554 367899999998876 4667888999999999753322 2223222 110 2
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHH---------HHHHh----cCCCcEEEeChHHHHHHHhcC
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA---------QEFKL----KKGIDVVIGTPGRIKDHIERG 255 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~---------~~~~l----~~~~~IlV~Tp~rl~~~l~~~ 255 (620)
.+|||||. .+..||..+|..|... ++|..++|..+..+ ....+ ....+|+|+|+..+.- ...
T Consensus 257 paLIVCP~-Tii~qW~~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d 331 (923)
T KOG0387|consen 257 PALIVCPA-TIIHQWMKEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGD 331 (923)
T ss_pred ceEEEccH-HHHHHHHHHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCc
Confidence 38999998 7888999999988754 67777777655211 11111 2356799999987732 222
Q ss_pred CccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC-hHHHH------------------------
Q 007044 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP-SWVKH------------------------ 310 (620)
Q Consensus 256 ~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~-~~~~~------------------------ 310 (620)
.+.-..+.++|+||.|++-+.. ..+......++ ..+.+++|.|.- +.+.+
T Consensus 332 ~l~~~~W~y~ILDEGH~IrNpn--s~islackki~---T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~ 406 (923)
T KOG0387|consen 332 DLLGILWDYVILDEGHRIRNPN--SKISLACKKIR---TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFE 406 (923)
T ss_pred ccccccccEEEecCcccccCCc--cHHHHHHHhcc---ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhh
Confidence 3334457899999999986554 22333333343 457777888821 11111
Q ss_pred -----------------------------------------------------------------HHHHhcccCCcEEEE
Q 007044 311 -----------------------------------------------------------------ISTKFLKSDKKTIDL 325 (620)
Q Consensus 311 -----------------------------------------------------------------~~~~~~~~~~~~i~~ 325 (620)
+...|+.. ..+..+
T Consensus 407 ~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s-~~v~~i 485 (923)
T KOG0387|consen 407 HPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNS-SEVNKI 485 (923)
T ss_pred hheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhh-HHHHHH
Confidence 11111100 000000
Q ss_pred ecCccc-cc-------ccceEEEE--------------EeCCchhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHh
Q 007044 326 VGNEKM-KA-------STNVRHIV--------------LPCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADL 382 (620)
Q Consensus 326 ~~~~~~-~~-------~~~i~~~~--------------~~~~~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~ 382 (620)
.++... .. .-+-..++ -....+.+..++..++... ..+.++|+|..++...+-|...
T Consensus 486 ~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~f 565 (923)
T KOG0387|consen 486 LNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESF 565 (923)
T ss_pred HcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHH
Confidence 000000 00 00000000 0111245666777777643 4678999999999999999888
Q ss_pred cc-----cchhhccccchHHHHHHHHHhhcCCc--eEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCC
Q 007044 383 LP-----GARALHGDIQQSQREVTLAGFRSGKF--MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455 (620)
Q Consensus 383 l~-----~~~~lh~~l~~~~R~~~~~~F~~g~~--~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~ 455 (620)
|. .+..+.|..+...|..++++|.++.. -+|++|.|.+-|+|+.+.+-||.||+-|+|.+-.|..-|+-|.|+
T Consensus 566 L~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 566 LRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred HHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 87 35567899999999999999997653 457899999999999999999999999999999999999999998
Q ss_pred cc-EE-EEEeCCC
Q 007044 456 TG-VA-VMLYDPR 466 (620)
Q Consensus 456 ~G-~~-i~l~~~~ 466 (620)
+- ++ |.|++..
T Consensus 646 kkdV~VYRL~t~g 658 (923)
T KOG0387|consen 646 KKDVVVYRLMTAG 658 (923)
T ss_pred ccceEEEEEecCC
Confidence 54 33 5566655
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.1e-17 Score=182.95 Aligned_cols=324 Identities=20% Similarity=0.275 Sum_probs=206.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|.-.--.+..|+ |....||-|||++..+|++-....+.. |-|++...-||..=+++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gkg-------------VhVVTvNdYLA~RDae~ 138 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKG-------------VIVSTVNEYLAERDAEE 138 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCc-------------eEEEecchhhhhhhHHH
Confidence 365 88999988877777775 899999999999999999765555543 88889999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhhh----
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l~---- 275 (620)
+..+..++|++|+++..+.+....... ..+||++||..-| .|+|+.. ....+.+.|.|+||+|.+|=
T Consensus 139 mg~vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEAr 216 (925)
T PRK12903 139 MGKVFNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAK 216 (925)
T ss_pred HHHHHHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccC
Confidence 999999999999999887765543333 3599999998776 4444432 22356788999999999761
Q ss_pred ------------cCcHHHHHHHHHhcccc-----CCceEEeecCC-------------C-C-------hHHHHHH--HHh
Q 007044 276 ------------MGFVEDVELILGKVEDA-----NKVQTLLFSAT-------------L-P-------SWVKHIS--TKF 315 (620)
Q Consensus 276 ------------~~f~~~l~~il~~~~~~-----~~~q~ll~SAT-------------l-~-------~~~~~~~--~~~ 315 (620)
..++..+..+...+... ...+.+.++.. + . .++.... ..+
T Consensus 217 TPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 217 TPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred CcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 01333333444433210 01112222211 0 0 0000000 001
Q ss_pred cccCCcEE------EEec--------------------------------------------------------------
Q 007044 316 LKSDKKTI------DLVG-------------------------------------------------------------- 327 (620)
Q Consensus 316 ~~~~~~~i------~~~~-------------------------------------------------------------- 327 (620)
+..+...+ .++.
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~ 376 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ 376 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 11111111 0000
Q ss_pred --------------CcccccccceEEEEEeCCchhhh-hhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcccchhhccc
Q 007044 328 --------------NEKMKASTNVRHIVLPCSSSARS-QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGD 392 (620)
Q Consensus 328 --------------~~~~~~~~~i~~~~~~~~~~~~~-~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~lh~~ 392 (620)
...+.........++. ....+. .++..+...+..+.|+||.|.|...++.|+..|.....-|.-
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~v 455 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTV 455 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCcee
Confidence 0000000000011111 122333 345556666778899999999999999999999855444444
Q ss_pred cc--hHHHHHHHHHhhcC-CceEEEecccccccCCCCCcc--------EEEEcCCCCCHHHHHHHhcccccCCCccEEEE
Q 007044 393 IQ--QSQREVTLAGFRSG-KFMTLVATNVAARGLDINDVQ--------LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461 (620)
Q Consensus 393 l~--~~~R~~~~~~F~~g-~~~vLvaTdv~~rGlDi~~v~--------~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~ 461 (620)
+. +.+++.-+-. +.| .-.|.|||++|+||.||.--. |||....|.|..---|..||+||-|.+|.+-+
T Consensus 456 LNAk~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 456 LNAKQNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ecccchhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 43 2233332222 333 337999999999999997332 89999999999999999999999999999988
Q ss_pred EeCCCchHH
Q 007044 462 LYDPRKSSV 470 (620)
Q Consensus 462 l~~~~~~~~ 470 (620)
|++-....+
T Consensus 535 ~lSLeD~L~ 543 (925)
T PRK12903 535 FISLDDQLF 543 (925)
T ss_pred EEecchHHH
Confidence 887664333
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=4.1e-17 Score=183.15 Aligned_cols=309 Identities=14% Similarity=0.124 Sum_probs=178.5
Q ss_pred CcHHHHHHHHHHH----c------CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 132 LFPIQAMTFDMVL----D------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 132 ~~~~Q~~~i~~il----~------g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
++++|..++..+. . .+..+++.+||||||++.+..+...+ .. ...+++|||+|+.+|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~----------~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL----------LKNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh----------cCCCeEEEEECcHHHHH
Confidence 6788999887754 2 25799999999999998765554333 21 23567999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeChHHHHHHHhcC--CccCCCc-cEEEeccchhhhhcC
Q 007044 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERG--NIDLSSL-KFRVLDEADEMLRMG 277 (620)
Q Consensus 202 Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~--~~~l~~l-~~lVlDEah~~l~~~ 277 (620)
|+.+.|..++... ..+..+...-...+. ....|+|+|.+.|...+... .+....- -+||+||||+....
T Consensus 308 Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~- 380 (667)
T TIGR00348 308 QLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG- 380 (667)
T ss_pred HHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-
Confidence 9999999876321 111112222222232 24789999999997644321 1111111 27999999976422
Q ss_pred cHHHHHHHH-HhccccCCceEEeecCCCChHHHH-HHHHhcccCCcEEEEec-Cccc--ccccceEEEEEeC----Cch-
Q 007044 278 FVEDVELIL-GKVEDANKVQTLLFSATLPSWVKH-ISTKFLKSDKKTIDLVG-NEKM--KASTNVRHIVLPC----SSS- 347 (620)
Q Consensus 278 f~~~l~~il-~~~~~~~~~q~ll~SATl~~~~~~-~~~~~~~~~~~~i~~~~-~~~~--~~~~~i~~~~~~~----~~~- 347 (620)
.+...+ ..++ +...++||||.-..... -...|.......+.... .+.. .....+....... ...
T Consensus 381 ---~~~~~l~~~~p---~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~ 454 (667)
T TIGR00348 381 ---ELAKNLKKALK---NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKK 454 (667)
T ss_pred ---HHHHHHHhhCC---CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHH
Confidence 233333 4555 36899999996321100 00111100001111100 0000 0000000000000 000
Q ss_pred ---------------------------------------hhhhhHHHHHHhc-----CCCCeEEEEEcccccHHHHHHhc
Q 007044 348 ---------------------------------------ARSQVIPDIIRCY-----SSGGRTIIFTETKESASQLADLL 383 (620)
Q Consensus 348 ---------------------------------------~~~~~l~~ll~~~-----~~~~~~iVF~~t~~~~~~l~~~l 383 (620)
........++..+ ..+++++|||.++..|..+...|
T Consensus 455 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l 534 (667)
T TIGR00348 455 LDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNAL 534 (667)
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHH
Confidence 0001111222221 12489999999999999888776
Q ss_pred cc---------chhhccccchH---------------------HHHHHHHHhhc-CCceEEEecccccccCCCCCccEEE
Q 007044 384 PG---------ARALHGDIQQS---------------------QREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLII 432 (620)
Q Consensus 384 ~~---------~~~lh~~l~~~---------------------~R~~~~~~F~~-g~~~vLvaTdv~~rGlDi~~v~~VI 432 (620)
.. +.++++..... ....++++|++ +.++|||.+|++..|+|.|.+++++
T Consensus 535 ~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy 614 (667)
T TIGR00348 535 DEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY 614 (667)
T ss_pred HhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE
Confidence 41 12333332211 23478899976 6889999999999999999999988
Q ss_pred EcCCCCCHHHHHHHhcccccC-C--C-ccEEEEEeCC
Q 007044 433 QCEPPRDVEAYIHRSGRTGRA-G--N-TGVAVMLYDP 465 (620)
Q Consensus 433 ~~d~P~s~~~yiqr~GRtgR~-g--~-~G~~i~l~~~ 465 (620)
..-+-.+ ..++|.+||+-|. + + .|..+-++..
T Consensus 615 ldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 615 LDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred Eeccccc-cHHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 7666565 4689999999994 3 2 3455554443
No 127
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.78 E-value=4.5e-17 Score=179.52 Aligned_cols=130 Identities=22% Similarity=0.280 Sum_probs=100.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|.-+.-.+. +.-|+...||.|||+++.+|++-....+.. |-|++++..||.+-+++
T Consensus 73 lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~-------------VhVvT~NdyLA~RD~e~ 136 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTGKG-------------VHIVTVNDYLAKRDQEW 136 (870)
T ss_pred hCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcCCc-------------eEEEeCCHHHHHHHHHH
Confidence 466 58899987765554 456999999999999999999654444432 89999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-----HHHHhc--CCccCCCccEEEeccchhhh
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-----KDHIER--GNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-----~~~l~~--~~~~l~~l~~lVlDEah~~l 274 (620)
+..+...+|++|+++.++.+....... ..+||+.+|..-+ .|.|.. .....+.+.+.|+||+|.+|
T Consensus 137 m~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 137 MGQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999999999999999988876543333 3589999998654 343321 12235678999999999986
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.76 E-value=1.4e-17 Score=179.51 Aligned_cols=294 Identities=18% Similarity=0.212 Sum_probs=189.8
Q ss_pred CCCCcHHHHHHHHHHH----cC-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVL----DG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
-..|+++|..||..+. +| +.++++..||||||.++. .++.+|.+.. ...|+|+|+-++.|..|.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~----------~~KRVLFLaDR~~Lv~QA 231 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSG----------WVKRVLFLADRNALVDQA 231 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcc----------hhheeeEEechHHHHHHH
Confidence 3568899999997654 44 449999999999998754 4555555532 344799999999999999
Q ss_pred HHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC-----CccCCCccEEEeccchhhhhcC
Q 007044 204 HEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLRMG 277 (620)
Q Consensus 204 ~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-----~~~l~~l~~lVlDEah~~l~~~ 277 (620)
+..|..+...- ..+...-..+.. .++|.|+|..++...+... .+....+++||+||||+=.
T Consensus 232 ~~af~~~~P~~~~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi--- 298 (875)
T COG4096 232 YGAFEDFLPFGTKMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI--- 298 (875)
T ss_pred HHHHHHhCCCccceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---
Confidence 99998887542 122222222221 4789999999999888654 2445568999999999753
Q ss_pred cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhccc------------------CCcEEEEecCc--ccccccc-
Q 007044 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS------------------DKKTIDLVGNE--KMKASTN- 336 (620)
Q Consensus 278 f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~------------------~~~~i~~~~~~--~~~~~~~- 336 (620)
......|+.++.. -+++++||+...+..-.-.|++. ++..+.+.... .......
T Consensus 299 -~~~~~~I~dYFdA----~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ 373 (875)
T COG4096 299 -YSEWSSILDYFDA----ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAG 373 (875)
T ss_pred -HhhhHHHHHHHHH----HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCcc
Confidence 5556688888754 33445898655333322223311 12222211100 0000000
Q ss_pred ----------e--EEEEE-----------eCCchhhhhhHHHHHHhc--C-CCCeEEEEEcccccHHHHHHhcc------
Q 007044 337 ----------V--RHIVL-----------PCSSSARSQVIPDIIRCY--S-SGGRTIIFTETKESASQLADLLP------ 384 (620)
Q Consensus 337 ----------i--~~~~~-----------~~~~~~~~~~l~~ll~~~--~-~~~~~iVF~~t~~~~~~l~~~l~------ 384 (620)
+ ....+ ..........+...+... . .-+++||||.+...|+.+...|.
T Consensus 374 serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~ 453 (875)
T COG4096 374 SEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY 453 (875)
T ss_pred chhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc
Confidence 0 00000 000011112233333331 1 13689999999999999999886
Q ss_pred ---cchhhccccchHHHHHHHHHhhc--CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccC
Q 007044 385 ---GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453 (620)
Q Consensus 385 ---~~~~lh~~l~~~~R~~~~~~F~~--g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~ 453 (620)
-+..+.|+-.+.+ ..++.|.. .--+|.|+.|++..|||+|.|-++|.+-.-+|..-|.|++||.-|.
T Consensus 454 ~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 454 NGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 2445666655443 34555543 4457889999999999999999999999999999999999999885
No 129
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=4.1e-17 Score=167.18 Aligned_cols=346 Identities=14% Similarity=0.075 Sum_probs=236.4
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
+..+--+....+|.++|..+.+|+++++.-.|.+||.++|.+.....+..... .-.+++.||.+++...
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----------s~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----------TNSLLPSEMVEHLRNG 347 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----------cceecchhHHHHhhcc
Confidence 34455567789999999999999999999999999999998888766655332 2279999999999865
Q ss_pred HHHHHHhh---cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCcc----CCCccEEEeccchhhhhc
Q 007044 204 HEDFDVYG---GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID----LSSLKFRVLDEADEMLRM 276 (620)
Q Consensus 204 ~~~~~~~~---~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~----l~~l~~lVlDEah~~l~~ 276 (620)
.+.+.-.. +...--++-.+.|.+......-.+.+.+++++.|......+.-+.+. +-...++++||+|..+-
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~- 426 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF- 426 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-
Confidence 54332111 01112345556666666666666778999999999887765433322 33457889999997642
Q ss_pred CcHHHHHHHH-------HhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC----
Q 007044 277 GFVEDVELIL-------GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS---- 345 (620)
Q Consensus 277 ~f~~~l~~il-------~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---- 345 (620)
-|.......+ .......+.|++-.|||+-..+......+.-+....+...+ .+..-+++++..+
T Consensus 427 ~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG-----SPs~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 427 PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG-----SPSSEKLFVLWNPSAPP 501 (1034)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC-----CCCccceEEEeCCCCCC
Confidence 2333322222 22223346899999999988877665554322222232221 1223334443222
Q ss_pred --chhhhhhHH----HHHHhcCCCCeEEEEEcccccHHHHHHhcc------------cchhhccccchHHHHHHHHHhhc
Q 007044 346 --SSARSQVIP----DIIRCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRS 407 (620)
Q Consensus 346 --~~~~~~~l~----~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------------~~~~lh~~l~~~~R~~~~~~F~~ 407 (620)
...+...+. -+.+....+-++|-||.+++-|+.+....+ .+..+.|+....+|.++....-.
T Consensus 502 ~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~ 581 (1034)
T KOG4150|consen 502 TSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG 581 (1034)
T ss_pred cchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC
Confidence 122222211 122223356799999999999987765544 45568899999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC---chHHHHHHHHhCCCceee
Q 007044 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERESGVKFEHI 484 (620)
Q Consensus 408 g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~---~~~~~~i~~~~~~~~~~~ 484 (620)
|+..-+|||++++-||||.+++.|++.++|.|...+.|..|||||..++..++.++... ..++..-+...+..-.++
T Consensus 582 G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL 661 (1034)
T KOG4150|consen 582 GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEEL 661 (1034)
T ss_pred CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCccee
Confidence 99999999999999999999999999999999999999999999999988876665433 455554444445443334
Q ss_pred CC
Q 007044 485 SA 486 (620)
Q Consensus 485 ~~ 486 (620)
.+
T Consensus 662 ~L 663 (1034)
T KOG4150|consen 662 HL 663 (1034)
T ss_pred EE
Confidence 33
No 130
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.76 E-value=4.2e-16 Score=170.35 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=81.9
Q ss_pred CCCeEEEEEcccccHHHHHHhccc----chhhccccchHHHHHHHHHhhc----CCceEEEecccccccCCC--------
Q 007044 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS----GKFMTLVATNVAARGLDI-------- 425 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~lh~~l~~~~R~~~~~~F~~----g~~~vLvaTdv~~rGlDi-------- 425 (620)
.+|+++|.+.|....+.++..|.. ...+.|+.+ .+...+++|+. |.-.||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 568999999999999999988862 123344332 45668888987 468999999999999999
Q ss_pred C--CccEEEEcCCCCC-------------------------HHHHHHHhcccccCCCc--cEEEEEeCCC--chHHHHHH
Q 007044 426 N--DVQLIIQCEPPRD-------------------------VEAYIHRSGRTGRAGNT--GVAVMLYDPR--KSSVSKIE 474 (620)
Q Consensus 426 ~--~v~~VI~~d~P~s-------------------------~~~yiqr~GRtgR~g~~--G~~i~l~~~~--~~~~~~i~ 474 (620)
| .+++||..-+|.. ...+.|-+||--|.... --.|.+++++ ..+.+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 3 4888998776621 23456888999888664 4466667776 45555555
Q ss_pred HHh
Q 007044 475 RES 477 (620)
Q Consensus 475 ~~~ 477 (620)
...
T Consensus 627 ~~~ 629 (636)
T TIGR03117 627 ESV 629 (636)
T ss_pred HHH
Confidence 443
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.74 E-value=4.4e-17 Score=179.82 Aligned_cols=332 Identities=16% Similarity=0.200 Sum_probs=218.0
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.++.||++.+.++. -+-+.|+|...|-|||+.-.-.+.....+.+... ......-.|||||. .|+--|..+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~----~e~~~~PSLIVCPs-TLtGHW~~E 1049 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSES----SEFNRLPSLIVCPS-TLTGHWKSE 1049 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccc----hhhccCCeEEECCc-hhhhHHHHH
Confidence 45678999998854 2467899999999999976544444444331111 11122227999998 899999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHH
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 286 (620)
+.+|+.. +++...+|+.......+...++.+|+|++++.+.+-+. .+.-..+.|+|+||-|-|-+.. ..+....
T Consensus 1050 ~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~k--tkl~kav 1123 (1549)
T KOG0392|consen 1050 VKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSK--TKLTKAV 1123 (1549)
T ss_pred HHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchH--HHHHHHH
Confidence 9999877 67777788877776666666778999999998864322 1112345689999999875432 2233333
Q ss_pred HhccccCCceEEeecCCC--------------------------------------------------------------
Q 007044 287 GKVEDANKVQTLLFSATL-------------------------------------------------------------- 304 (620)
Q Consensus 287 ~~~~~~~~~q~ll~SATl-------------------------------------------------------------- 304 (620)
+.+.. -..+++|+|.
T Consensus 1124 kqL~a---~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1124 KQLRA---NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred HHHhh---cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 44432 3567788881
Q ss_pred ---------------Ch------------HHHHHHHHhcccCCcEEEE--ecCcccccc-------------cceEEE--
Q 007044 305 ---------------PS------------WVKHISTKFLKSDKKTIDL--VGNEKMKAS-------------TNVRHI-- 340 (620)
Q Consensus 305 ---------------~~------------~~~~~~~~~~~~~~~~i~~--~~~~~~~~~-------------~~i~~~-- 340 (620)
|+ .-..+.+.|.......+.. .+....... .-..|-
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaL 1280 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPAL 1280 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcce
Confidence 11 1111111111110000000 000000000 000000
Q ss_pred EEe----------------------CCchhhhhhHHHHHHhcC---------------CCCeEEEEEcccccHHHHHHhc
Q 007044 341 VLP----------------------CSSSARSQVIPDIIRCYS---------------SGGRTIIFTETKESASQLADLL 383 (620)
Q Consensus 341 ~~~----------------------~~~~~~~~~l~~ll~~~~---------------~~~~~iVF~~t~~~~~~l~~~l 383 (620)
... ...+.|..+|..++.... .+.++||||+-+...+-+.+-|
T Consensus 1281 vlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1281 VLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 000 012345667777776542 2358999999999998887655
Q ss_pred c-----cch--hhccccchHHHHHHHHHhhcC-CceEE-EecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCC
Q 007044 384 P-----GAR--ALHGDIQQSQREVTLAGFRSG-KFMTL-VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (620)
Q Consensus 384 ~-----~~~--~lh~~l~~~~R~~~~~~F~~g-~~~vL-vaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g 454 (620)
- .+. .+.|..++.+|.++.++|.++ .++|| ++|-|.+-|+|+.+.+.||+++-.|+|..-+|..-||.|.|
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhc
Confidence 4 333 689999999999999999998 77876 57799999999999999999999999999999999999999
Q ss_pred CccEE--EEEeCCC--chHHHHHHHH
Q 007044 455 NTGVA--VMLYDPR--KSSVSKIERE 476 (620)
Q Consensus 455 ~~G~~--i~l~~~~--~~~~~~i~~~ 476 (620)
++-++ +.|++.. +..+..+++.
T Consensus 1441 QKrvVNVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1441 QKRVVNVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred CceeeeeeeehhcccHHHHHhhHHHH
Confidence 97664 7777777 5666666553
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.74 E-value=1.7e-16 Score=173.48 Aligned_cols=320 Identities=17% Similarity=0.195 Sum_probs=200.1
Q ss_pred CCcHHHHHHHHHHHc---C-------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 131 SLFPIQAMTFDMVLD---G-------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~---g-------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
.++|+|++.+..+.. | .-+|+.-..|+|||+.....+...+...+.... .--++|||+|. .|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~------~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP------LINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc------cccccEEEccH-HHH
Confidence 678999999988763 2 237788889999999876666555555443110 11358999998 899
Q ss_pred HHHHHHHHHhhcCCCceEEEEeCCcch--HHHHHHh-----cCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 201 KQVHEDFDVYGGAVGLTSCCLYGGAPY--HAQEFKL-----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~v~~~~gg~~~--~~~~~~l-----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
.-|+++|.+|.....+....++|+.+. ..+...+ ....-|++-+++.+.+++.. +....+++||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 999999998877656888888888774 1111111 12356888889988776653 44667899999999998
Q ss_pred hhcCcHHHHHHHHHhccccCCceEEeecCCCCh-----------------------------------------------
Q 007044 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPS----------------------------------------------- 306 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~----------------------------------------------- 306 (620)
-+.. ..+-..+..+ ..++.|++|+|+=+
T Consensus 389 kN~~--s~~~kaL~~l---~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 389 KNSD--SLTLKALSSL---KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred cchh--hHHHHHHHhc---CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 5432 2223333333 34678899999210
Q ss_pred -----HHHHHHHHhcccCCc------------EEEEecCcc---------ccc--cc-----------------------
Q 007044 307 -----WVKHISTKFLKSDKK------------TIDLVGNEK---------MKA--ST----------------------- 335 (620)
Q Consensus 307 -----~~~~~~~~~~~~~~~------------~i~~~~~~~---------~~~--~~----------------------- 335 (620)
.+..+...|+..... .+-+..... ... ..
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~ 543 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLL 543 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhh
Confidence 011222222211100 000000000 000 00
Q ss_pred ----------------------ceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc--------c
Q 007044 336 ----------------------NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--------G 385 (620)
Q Consensus 336 ----------------------~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--------~ 385 (620)
...+.......+.+...|..++... ..++++|+.........-+++. .
T Consensus 544 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 544 LLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred cccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 0000000011123344455554322 2345555544433333332222 5
Q ss_pred chhhccccchHHHHHHHHHhhcCC---ceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--E
Q 007044 386 ARALHGDIQQSQREVTLAGFRSGK---FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--V 460 (620)
Q Consensus 386 ~~~lh~~l~~~~R~~~~~~F~~g~---~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i 460 (620)
+..|||.|+..+|+.+++.|.+.. .-.|.+|-+.+.||++-+.+.||.||++|+|+.-.|.++|+-|.|++-.| |
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 678999999999999999998633 33567788999999999999999999999999999999999999997766 5
Q ss_pred EEeCCC
Q 007044 461 MLYDPR 466 (620)
Q Consensus 461 ~l~~~~ 466 (620)
.|+...
T Consensus 702 rLlatG 707 (776)
T KOG0390|consen 702 RLLATG 707 (776)
T ss_pred EeecCC
Confidence 566655
No 133
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.73 E-value=9.1e-16 Score=159.67 Aligned_cols=289 Identities=19% Similarity=0.217 Sum_probs=209.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCC-Cce----EEEEeC---------------CcchHHHHHHh-----------
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT----SCCLYG---------------GAPYHAQEFKL----------- 234 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~----v~~~~g---------------g~~~~~~~~~l----------- 234 (620)
..|+||||+|+|..|.++.+.+..+.... .+. ...-+| +.....+....
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 67899999999999999998887765431 000 000011 00011111100
Q ss_pred -------------cCCCcEEEeChHHHHHHHhc------CCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccC--
Q 007044 235 -------------KKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-- 293 (620)
Q Consensus 235 -------------~~~~~IlV~Tp~rl~~~l~~------~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~-- 293 (620)
-.++|||||+|=.|...+.. ..-.|++|+++|+|.||.| .|+.|+.+..++..++..+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l-~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVL-LMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHH-HHhhHHHHHHHHHHhccCCCC
Confidence 02489999999999988874 2334899999999999988 5888999999999887643
Q ss_pred --------------------CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcc-----cccccceEEEEEeCCchh
Q 007044 294 --------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLPCSSSA 348 (620)
Q Consensus 294 --------------------~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~i~~~~~~~~~~~ 348 (620)
-+|+|+||+...+.+..+...++.+....+.+..... ......+.|.+.......
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2799999999999999999997766555555544332 244556777776543221
Q ss_pred -------h-----hhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceE
Q 007044 349 -------R-----SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (620)
Q Consensus 349 -------~-----~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~v 412 (620)
+ ..+|..+.. ....+++|||++|.-+--+|.++|. ....+|-..++.+-.+.-..|..|+.++
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 1 123444443 2355789999999999999999998 5667899999999999999999999999
Q ss_pred EEeccccc--ccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCC------ccEEEEEeCCCchHHHHHHHHhC
Q 007044 413 LVATNVAA--RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN------TGVAVMLYDPRKSSVSKIERESG 478 (620)
Q Consensus 413 LvaTdv~~--rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~------~G~~i~l~~~~~~~~~~i~~~~~ 478 (620)
|+.|.-+. +-..|.++++||.|++|..+.-|-..++-.+.... ...|.++|+.-. ..++|+-.|
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D--~~~LErIVG 425 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYD--ALRLERIVG 425 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhH--HHHHHHHhC
Confidence 99998765 67889999999999999999999888865544432 567888887662 334444444
No 134
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=4e-16 Score=171.65 Aligned_cols=130 Identities=22% Similarity=0.311 Sum_probs=105.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|...--.+..|+ |+...||-|||+++.+|++-....+.. |-||+++.-||.+-+++
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~Gkg-------------VhVVTvNdYLA~RDae~ 145 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKG-------------VHVVTVNDYLARRDAEW 145 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCC-------------eEEEeCCHHHHHhHHHH
Confidence 354 78888877766666655 889999999999999999876666543 89999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-----HHHHhc--CCccCCCccEEEeccchhhh
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-----KDHIER--GNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-----~~~l~~--~~~~l~~l~~lVlDEah~~l 274 (620)
+..+...+|++|+++.++.+... +.....+||++||+..| .|.|.. .....+.+.+.|+||+|.+|
T Consensus 146 m~~vy~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 146 MGQVHRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHHHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999999999999988776543 33445799999999887 555432 23446788999999999986
No 135
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.73 E-value=2.6e-17 Score=182.33 Aligned_cols=313 Identities=17% Similarity=0.255 Sum_probs=206.2
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHH---hHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHH
Q 007044 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLA---FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla---~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (620)
.+++.+|.+.+.+++ .+.++|+....|-|||.. |+-.+++...-. || .|||+|...+..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~------------gp-flvvvplst~~~- 434 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIH------------GP-FLVVVPLSTITA- 434 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhcc------------CC-eEEEeehhhhHH-
Confidence 789999999998876 679999999999999964 555555544221 12 699999966655
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc----C-----CCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----K-----GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 203 v~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~----~-----~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
|.++|..|+ .+++.++.|.......++... . .++++++|++.++.--. .+.--...++++||||++
T Consensus 435 W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrL 509 (1373)
T KOG0384|consen 435 WEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRL 509 (1373)
T ss_pred HHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhc
Confidence 566777775 577777777765544444331 2 48999999998855221 122223578999999998
Q ss_pred hhcCcHHHHHHHHHhccccCCceEEeecCCC-ChHHHHHHHHh--ccc--------------------------------
Q 007044 274 LRMGFVEDVELILGKVEDANKVQTLLFSATL-PSWVKHISTKF--LKS-------------------------------- 318 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~~~q~ll~SATl-~~~~~~~~~~~--~~~-------------------------------- 318 (620)
-+.. ...+. .+..+.. -..++.+.|. .+.+.++.... +..
T Consensus 510 kN~~-~~l~~-~l~~f~~---~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~ 584 (1373)
T KOG0384|consen 510 KNDE-SKLYE-SLNQFKM---NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFL 584 (1373)
T ss_pred CchH-HHHHH-HHHHhcc---cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHH
Confidence 6433 11222 2333322 2567777773 22232222111 100
Q ss_pred ------------C--C-cEEEEecC--cc-------------------ccc--ccc--------eEEEEEeCC-------
Q 007044 319 ------------D--K-KTIDLVGN--EK-------------------MKA--STN--------VRHIVLPCS------- 345 (620)
Q Consensus 319 ------------~--~-~~i~~~~~--~~-------------------~~~--~~~--------i~~~~~~~~------- 345 (620)
+ . .++.+.-. .. ... ..| ..|-|+...
T Consensus 585 lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~ 664 (1373)
T KOG0384|consen 585 LRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILG 664 (1373)
T ss_pred HHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHH
Confidence 0 0 00100000 00 000 000 001111100
Q ss_pred ----------------chhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHH
Q 007044 346 ----------------SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAG 404 (620)
Q Consensus 346 ----------------~~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~ 404 (620)
.+.|+-+|..||-.+. .|.++|||.+..+..+-|+++|. ....|.|.+....|...++.
T Consensus 665 ~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDh 744 (1373)
T KOG0384|consen 665 DFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDH 744 (1373)
T ss_pred hhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHh
Confidence 1112223333333332 45799999999999999999997 67789999999999999999
Q ss_pred hhc---CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--EEEeCCC
Q 007044 405 FRS---GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (620)
Q Consensus 405 F~~---g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~ 466 (620)
|.. ..+-+|+||-+.+-|||+...+.||.||-.|+|..-+|..-||.|.|++-.+ |.|++..
T Consensus 745 Fnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 745 FNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 975 5788999999999999999999999999999999999999999999997654 8889887
No 136
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.8e-16 Score=160.40 Aligned_cols=337 Identities=18% Similarity=0.204 Sum_probs=224.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEECCC-CChh--hHHhHHHHHHHHhCCCCCCccc------------------CCCCCC
Q 007044 129 IESLFPIQAMTFDMVLDGSDLVGRART-GQGK--TLAFVLPILESLTNGPTKASKK------------------TGYGRA 187 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~dvi~~a~T-GsGK--Tla~~lpil~~l~~~~~~~~~~------------------~~~~~~ 187 (620)
-..+|+.|.+.+..+.+.+|++..-.| +.|+ +-.|++-+++++.+.+....++ ...-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 367899999999999999998764443 3455 4579999999876533211100 011367
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCc---------eEEEEeCC------------------------------cchH
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGL---------TSCCLYGG------------------------------APYH 228 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~---------~v~~~~gg------------------------------~~~~ 228 (620)
|+||||||+|+-|..+.+.+..+..+.+- +...-|+| ..+.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 99999999999999999998877433211 01111221 0111
Q ss_pred HHHHHh---cCCCcEEEeChHHHHHHHhc------CCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccC------
Q 007044 229 AQEFKL---KKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN------ 293 (620)
Q Consensus 229 ~~~~~l---~~~~~IlV~Tp~rl~~~l~~------~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~------ 293 (620)
+....| -...||+||+|-.|..++.+ ..-.|+++.++|+|-||-|+ +..|+.+..|+.+++..+
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccCC
Confidence 111111 13589999999999888863 12237899999999999986 666899999998886533
Q ss_pred ----------------CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcc----cccccceEEEEEeCCc-------
Q 007044 294 ----------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK----MKASTNVRHIVLPCSS------- 346 (620)
Q Consensus 294 ----------------~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~~~~~~~------- 346 (620)
-+|+++||+-..+.+..+...++.+....+....... ......+.|.+.....
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 1699999999888888888888865554444322111 1111122222211110
Q ss_pred hhhhh-hHHHHHHhcC--CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 347 SARSQ-VIPDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 347 ~~~~~-~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
..+.. ....++-.+. ....+|||.++.-+--++.+++. ....+|...++.+-.+.-+-|-.|...||+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 11111 1222222221 12468999999999999999998 45567777777777888889999999999999877
Q ss_pred c--ccCCCCCccEEEEcCCCCCHHHHH---HHhcccccCCC----ccEEEEEeCCC
Q 007044 420 A--RGLDINDVQLIIQCEPPRDVEAYI---HRSGRTGRAGN----TGVAVMLYDPR 466 (620)
Q Consensus 420 ~--rGlDi~~v~~VI~~d~P~s~~~yi---qr~GRtgR~g~----~G~~i~l~~~~ 466 (620)
. |-.+|.+|..||.|.+|..|..|. .+.+|+.-.|+ .-.|.++|+.-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 5 788999999999999999988774 55677654443 33566666554
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=1.3e-16 Score=161.66 Aligned_cols=308 Identities=19% Similarity=0.211 Sum_probs=203.4
Q ss_pred CCCcHHHHHHHHHHHc-C--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLD-G--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~-g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
..++|+|..++..+.. | +.-|+..|.|+|||++-+-.+ ..+. .++||||.+--.+.||..+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~tik---------------K~clvLcts~VSVeQWkqQ 364 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTIK---------------KSCLVLCTSAVSVEQWKQQ 364 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eeec---------------ccEEEEecCccCHHHHHHH
Confidence 5789999999999883 3 678999999999998643322 1222 2499999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC--------CccCCCccEEEeccchhhhhcCc
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGF 278 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~--------~~~l~~l~~lVlDEah~~l~~~f 278 (620)
|..|..-..-.++.++.... .....++.|+|+|+..+..--.+. .+.-..+.++++||+|-+-..-|
T Consensus 365 fk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 365 FKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred HHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 99887554455555555432 123457899999987663321110 12234568899999998876666
Q ss_pred HHHHHHHHHhccccCCceEEeecCCCChHHHHHHHH-h-------------cccCCcE--EE---EecCc------cccc
Q 007044 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK-F-------------LKSDKKT--ID---LVGNE------KMKA 333 (620)
Q Consensus 279 ~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~-~-------------~~~~~~~--i~---~~~~~------~~~~ 333 (620)
+.-+..+-.++ .+.++||+-.....+... | +.....+ +. +.-.. ....
T Consensus 440 RRVlsiv~aHc-------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~ 512 (776)
T KOG1123|consen 440 RRVLSIVQAHC-------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR 512 (776)
T ss_pred HHHHHHHHHHh-------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh
Confidence 66666555554 368899963322111110 1 1000000 00 00000 0000
Q ss_pred ccceEEEEEeCCchhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcccchhhccccchHHHHHHHHHhhc-CCce
Q 007044 334 STNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS-GKFM 411 (620)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~F~~-g~~~ 411 (620)
...-+...+.+-+..|..+-..+++.+. .+.++|||..+.-.....+-.|.+ -.++|..+|.+|.++++.|+- ..++
T Consensus 513 ~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-pfIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 513 ENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-PFIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred hhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-ceEECCCchhHHHHHHHhcccCCccc
Confidence 0111112222334456666666666543 678999999998888888877754 357899999999999999985 5678
Q ss_pred EEEecccccccCCCCCccEEEEcCC-CCCHHHHHHHhcccccCCC---ccEE---EEEeCCC
Q 007044 412 TLVATNVAARGLDINDVQLIIQCEP-PRDVEAYIHRSGRTGRAGN---TGVA---VMLYDPR 466 (620)
Q Consensus 412 vLvaTdv~~rGlDi~~v~~VI~~d~-P~s~~~yiqr~GRtgR~g~---~G~~---i~l~~~~ 466 (620)
.++-+.|+-..+|+|..+++|+..- -.|-..=.||.||.-|+.+ ++.- +.+++.+
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 8888999999999999999998654 3467788999999999854 3333 4555555
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.71 E-value=2.9e-15 Score=174.22 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=86.8
Q ss_pred CCCeEEEEEcccccHHHHHHhccc------chhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCC--ccEEEE
Q 007044 362 SGGRTIIFTETKESASQLADLLPG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND--VQLIIQ 433 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~~------~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~--v~~VI~ 433 (620)
.++++|||++|.+..+.++..|.. ...+.-+++...|..++++|+.+.-.||++|..+.+|||+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999988752 122333444457899999999988899999999999999997 477888
Q ss_pred cCCCC----C--------------------------HHHHHHHhcccccCCCccEEEEEeCCC---chHHHHHHHHh
Q 007044 434 CEPPR----D--------------------------VEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERES 477 (620)
Q Consensus 434 ~d~P~----s--------------------------~~~yiqr~GRtgR~g~~G~~i~l~~~~---~~~~~~i~~~~ 477 (620)
..+|. + ...+.|.+||.-|....--++++++++ .++-+.+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 66653 1 223468889999987654467788887 34455555544
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=5.1e-17 Score=144.87 Aligned_cols=124 Identities=38% Similarity=0.696 Sum_probs=108.1
Q ss_pred EEEEEeCCchhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceE
Q 007044 338 RHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (620)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~v 412 (620)
.+.+...+ ..+...+..++.... .++++||||++...++.++..|. .+..+||+++..+|..+++.|.+|...+
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444443 256666777776553 57899999999999999999986 5778999999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEE
Q 007044 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (620)
Q Consensus 413 LvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l 462 (620)
|++|.++++|+|+|++++||.++.|++...|+|++||++|.|+.|.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999999988763
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.7e-15 Score=136.17 Aligned_cols=144 Identities=44% Similarity=0.562 Sum_probs=111.4
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~ 226 (620)
+++++.++||+|||..++..+....... ...+++|++|++.|+.|+.+.+..+... +..+..+.++..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-----------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-----------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-----------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 4689999999999999988888777652 2235999999999999999999887765 677777777776
Q ss_pred hHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCC
Q 007044 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
...+......+.+|+++|++.+...+.........++++|+||+|.+....+............. ..+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK--DRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc--cceEEEEeccC
Confidence 66655556678999999999999888766555677899999999999766544432122222222 57899999994
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=8.8e-16 Score=157.87 Aligned_cols=295 Identities=18% Similarity=0.193 Sum_probs=188.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
..+-++-+|||.||||.- +++++..... +++--|.|-||..|++.++..+ +.+..++|.
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~~aks-------------GvycGPLrLLA~EV~~r~na~g----ipCdL~TGe 248 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLKSAKS-------------GVYCGPLRLLAHEVYDRLNALG----IPCDLLTGE 248 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHhhhcc-------------ceecchHHHHHHHHHHHhhhcC----CCccccccc
Confidence 345577889999999974 4566655432 7999999999999999998754 666666665
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHH-HHHhccccCCceEEeecCC
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL-ILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~-il~~~~~~~~~q~ll~SAT 303 (620)
........ ...++.+=||-+++ .. -..+++.|+||...|-+...+-.+.. ++..... ......
T Consensus 249 E~~~~~~~--~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--EiHLCG---- 312 (700)
T KOG0953|consen 249 ERRFVLDN--GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--EIHLCG---- 312 (700)
T ss_pred eeeecCCC--CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--hhhccC----
Confidence 43222111 12366777776654 11 34578999999999987665444443 3333322 233322
Q ss_pred CChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhc
Q 007044 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383 (620)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l 383 (620)
.+.+..+.+..+......+.+..-+ ....-...+.+..-+....+|..++.| |++..-.+...+
T Consensus 313 -epsvldlV~~i~k~TGd~vev~~Ye-------------Rl~pL~v~~~~~~sl~nlk~GDCvV~F--Skk~I~~~k~kI 376 (700)
T KOG0953|consen 313 -EPSVLDLVRKILKMTGDDVEVREYE-------------RLSPLVVEETALGSLSNLKPGDCVVAF--SKKDIFTVKKKI 376 (700)
T ss_pred -CchHHHHHHHHHhhcCCeeEEEeec-------------ccCcceehhhhhhhhccCCCCCeEEEe--ehhhHHHHHHHH
Confidence 2344556666654333333222111 011101111223333444454444444 555565555554
Q ss_pred c-----cchhhccccchHHHHHHHHHhhc--CCceEEEecccccccCCCCCccEEEEcCC---------CCCHHHHHHHh
Q 007044 384 P-----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEP---------PRDVEAYIHRS 447 (620)
Q Consensus 384 ~-----~~~~lh~~l~~~~R~~~~~~F~~--g~~~vLvaTdv~~rGlDi~~v~~VI~~d~---------P~s~~~yiqr~ 447 (620)
. .+.+++|.+++..|..--..|.+ ++++||||||++++|+|+ +++-||.|++ |.+..+..|-+
T Consensus 377 E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIA 455 (700)
T KOG0953|consen 377 EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIA 455 (700)
T ss_pred HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHh
Confidence 4 58899999999999999999987 999999999999999999 7888998885 35688899999
Q ss_pred cccccCCC---ccEEEEEeCCCchHHHHHHHHhCCCce-eeCCCCHHHHH
Q 007044 448 GRTGRAGN---TGVAVMLYDPRKSSVSKIERESGVKFE-HISAPQPADIA 493 (620)
Q Consensus 448 GRtgR~g~---~G~~i~l~~~~~~~~~~i~~~~~~~~~-~~~~p~~~~i~ 493 (620)
|||||.|. .|.+.+|.......++++.+..-..+. ..-.|..+.+.
T Consensus 456 GRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~epi~~agl~pt~eqie 505 (700)
T KOG0953|consen 456 GRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEPIKNAGLWPTDEQIE 505 (700)
T ss_pred hcccccccCCcCceEEEeeHhhHHHHHHHHhCCchHHHhccCCccHHHHH
Confidence 99999975 788999888885556655543222222 22345555544
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=9.2e-17 Score=129.53 Aligned_cols=70 Identities=39% Similarity=0.722 Sum_probs=68.2
Q ss_pred cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCC
Q 007044 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (620)
Q Consensus 385 ~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g 454 (620)
.+..+||++++.+|..+++.|+++...|||||+++++|||+|++++||+|++|+++..|+|++||+||.|
T Consensus 9 ~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 9 KVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 6778999999999999999999999999999999999999999999999999999999999999999986
No 143
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.65 E-value=6.9e-15 Score=156.87 Aligned_cols=325 Identities=18% Similarity=0.240 Sum_probs=209.3
Q ss_pred CcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 132 LFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 132 ~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
+-++|.-.+.++. .+-+.|+....|-|||... +..+..|..... .+| -|||||...|-+ |.++|
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~---------~gp-HLVVvPsSTleN-WlrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN---------PGP-HLVVVPSSTLEN-WLREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC---------CCC-cEEEecchhHHH-HHHHH
Confidence 6689999998854 5667899999999999653 333333433211 233 399999987766 55678
Q ss_pred HHhhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeChHHHHHHH-hcCCccCCCccEEEeccchhhhhcCcHHHH
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHI-ERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~l-~~~~~~l~~l~~lVlDEah~~l~~~f~~~l 282 (620)
.+|+. .++|.++||......+.+... .+++|+|+|+.....-- .+..+.-.++.++|+||+|.+-++. .+.+
T Consensus 468 ~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy 544 (941)
T KOG0389|consen 468 AKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERY 544 (941)
T ss_pred HHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHH
Confidence 88874 489999999987777765542 36899999987653221 1123344568899999999876655 3334
Q ss_pred HHHHHhccccCCceEEeecCCCC-hHHHHH--------------------------------------------------
Q 007044 283 ELILGKVEDANKVQTLLFSATLP-SWVKHI-------------------------------------------------- 311 (620)
Q Consensus 283 ~~il~~~~~~~~~q~ll~SATl~-~~~~~~-------------------------------------------------- 311 (620)
..++.-- ..+.+++++|.- +.+.++
T Consensus 545 ~~LM~I~----An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 545 KHLMSIN----ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM 620 (941)
T ss_pred HHhcccc----ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh
Confidence 4444322 236778888810 000000
Q ss_pred --------HHHhcccCCcE---EEEecCcc-----------------cccccc---------------------eEEEE-
Q 007044 312 --------STKFLKSDKKT---IDLVGNEK-----------------MKASTN---------------------VRHIV- 341 (620)
Q Consensus 312 --------~~~~~~~~~~~---i~~~~~~~-----------------~~~~~~---------------------i~~~~- 341 (620)
....+..-|.. |....-.. .....+ ++++|
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 00001001110 10000000 000000 00000
Q ss_pred ---------------------------------------------------E---eCCchhhhhhHHHHHHhc-CCCCeE
Q 007044 342 ---------------------------------------------------L---PCSSSARSQVIPDIIRCY-SSGGRT 366 (620)
Q Consensus 342 ---------------------------------------------------~---~~~~~~~~~~l~~ll~~~-~~~~~~ 366 (620)
+ ..-.+.|...|..+|... ..|.++
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RV 780 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRV 780 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEE
Confidence 0 000133444555555443 245799
Q ss_pred EEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCC--ceEEEecccccccCCCCCccEEEEcCCCCCH
Q 007044 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRDV 440 (620)
Q Consensus 367 iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~--~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~ 440 (620)
|||..--...+-|...|. ....|.|...-..|+.+++.|...+ +-+|++|-+.+-|||+...++||.||+..+|
T Consensus 781 LiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP 860 (941)
T KOG0389|consen 781 LIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNP 860 (941)
T ss_pred EEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCC
Confidence 999998888877777766 5667899999999999999998653 4568899999999999999999999999999
Q ss_pred HHHHHHhcccccCCCc--cEEEEEeCCC--chHHHHHHH
Q 007044 441 EAYIHRSGRTGRAGNT--GVAVMLYDPR--KSSVSKIER 475 (620)
Q Consensus 441 ~~yiqr~GRtgR~g~~--G~~i~l~~~~--~~~~~~i~~ 475 (620)
-.-.|.--||.|.|+. -.++.|++.. +..+.++.+
T Consensus 861 ~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 861 YDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred cccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHH
Confidence 9999999999999984 4557788887 555655544
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=99.65 E-value=5.8e-16 Score=165.65 Aligned_cols=327 Identities=19% Similarity=0.266 Sum_probs=196.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcC----CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEc
Q 007044 119 PLREKLKSKGIESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (620)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~~i~~il~g----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (620)
++...|.-..-.+|+|+|+.||.....| ..-=+...+|+|||++. |-|.+++... ++|+|+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~~--------------~iL~Lv 213 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAAA--------------RILFLV 213 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhhh--------------heEeec
Confidence 4445555556789999999999998865 12233456799999985 4566666552 489999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHH-------------------------HHHhcCCCcEEEeChHHHH
Q 007044 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ-------------------------EFKLKKGIDVVIGTPGRIK 249 (620)
Q Consensus 195 PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~-------------------------~~~l~~~~~IlV~Tp~rl~ 249 (620)
|+..|..|..+++..-. ...++...++......+- .+.-..+--||++|++.+.
T Consensus 214 PSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99999999988876432 234555555543321110 1112235679999999886
Q ss_pred HHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhcccc---CCceEEeecCCCCh---HHHHHH-----------
Q 007044 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA---NKVQTLLFSATLPS---WVKHIS----------- 312 (620)
Q Consensus 250 ~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~---~~~q~ll~SATl~~---~~~~~~----------- 312 (620)
..-+-...-+..+++||+||||+-.......+=..-+..+... .....+.|+||..- .+..-+
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 6554434457789999999999964222111111222222111 12356778888311 111111
Q ss_pred -------------------HHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhc-------C-----
Q 007044 313 -------------------TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY-------S----- 361 (620)
Q Consensus 313 -------------------~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~-------~----- 361 (620)
+..+ .+.+++-+..... ................-..+-...++-+. .
T Consensus 373 De~~fGeef~rl~FgeAv~rdlL-TDYKVmvlaVd~~-~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~ 450 (1518)
T COG4889 373 DELTFGEEFHRLGFGEAVERDLL-TDYKVMVLAVDKE-VIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDL 450 (1518)
T ss_pred hhhhhchhhhcccHHHHHHhhhh-ccceEEEEEechh-hhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccc
Confidence 1111 1222222211110 00011111110011011111111111111 0
Q ss_pred --------CCCeEEEEEcccccHHHHHHhcc-------------------cchhhccccchHHHHHHHH---HhhcCCce
Q 007044 362 --------SGGRTIIFTETKESASQLADLLP-------------------GARALHGDIQQSQREVTLA---GFRSGKFM 411 (620)
Q Consensus 362 --------~~~~~iVF~~t~~~~~~l~~~l~-------------------~~~~lh~~l~~~~R~~~~~---~F~~g~~~ 411 (620)
+..+.|-||.+.++...+++.+. .+....|.|...+|.+.+. .|....++
T Consensus 451 ~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neck 530 (1518)
T COG4889 451 KNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECK 530 (1518)
T ss_pred cCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhe
Confidence 11368999999999988888775 2334568899999866554 45678899
Q ss_pred EEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccC--CC-ccEEEEEe
Q 007044 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA--GN-TGVAVMLY 463 (620)
Q Consensus 412 vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~--g~-~G~~i~l~ 463 (620)
||--...+++|+|+|.++-||.|++-.+.-+.+|.+||.-|- |+ .|..|+=+
T Consensus 531 IlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 531 ILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred eeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999999999999999999999999999999999999999995 22 56666533
No 145
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=7.9e-15 Score=163.08 Aligned_cols=118 Identities=25% Similarity=0.331 Sum_probs=94.6
Q ss_pred hhHHHHHHhcCCCCeEEEEEcccccHHHHHHhccc----chhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 007044 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (620)
Q Consensus 351 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~ 426 (620)
.++..+...+..+.|+||-|.|....+.|+..|.. ..+|++.....+-+-+-+.=+.| .|-|||++|+||-||.
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIk 693 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIK 693 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcc
Confidence 45566667777899999999999999999999983 34566655544444454555555 6889999999999997
Q ss_pred --------CccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHH
Q 007044 427 --------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (620)
Q Consensus 427 --------~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~ 470 (620)
+==|||--..+.|..---|-.||+||-|.+|.+-+|++-....+
T Consensus 694 Lg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 694 LSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred cchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 44589999999999999999999999999999988888664333
No 146
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.62 E-value=8.6e-14 Score=141.35 Aligned_cols=325 Identities=12% Similarity=0.162 Sum_probs=208.1
Q ss_pred CCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
+..+.|+|.+.+...+ .|..+++....|-|||+.++..+.-.....+ .||+||. .|-.-|++.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp--------------lliVcPA-svrftWa~al 260 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP--------------LLIVCPA-SVRFTWAKAL 260 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc--------------EEEEecH-HHhHHHHHHH
Confidence 3467899999998866 6788999999999999976543332222221 7999998 6667788889
Q ss_pred HHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHH
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~ 287 (620)
.+|...... +..+.++.+.... +-....|.|.+++.+..+- ..+.-..+.+||+||.|.+-+ +-......++.
T Consensus 261 ~r~lps~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~d 333 (689)
T KOG1000|consen 261 NRFLPSIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKD-SKTKRTKAATD 333 (689)
T ss_pred HHhcccccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhc-cchhhhhhhhh
Confidence 888765422 5555555543311 1223679999998875442 234455688999999997743 33333444444
Q ss_pred hccccCCceEEeecCCC-------------------ChHHHHHHHHhcccCCcEE--EEecCcc----------------
Q 007044 288 KVEDANKVQTLLFSATL-------------------PSWVKHISTKFLKSDKKTI--DLVGNEK---------------- 330 (620)
Q Consensus 288 ~~~~~~~~q~ll~SATl-------------------~~~~~~~~~~~~~~~~~~i--~~~~~~~---------------- 330 (620)
.+.. -.++|++|.|. -+...+++.+|+......+ +..+...
T Consensus 334 llk~--akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 334 LLKV--AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred HHHH--hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHH
Confidence 4433 24789999993 1223445555653222211 1111100
Q ss_pred ------cccccceEEEEEeCCch-------------------------------------hhhhh-HHHHHH----hcCC
Q 007044 331 ------MKASTNVRHIVLPCSSS-------------------------------------ARSQV-IPDIIR----CYSS 362 (620)
Q Consensus 331 ------~~~~~~i~~~~~~~~~~-------------------------------------~~~~~-l~~ll~----~~~~ 362 (620)
...+..-++..+.+... .|... ...++. ...+
T Consensus 412 lK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~ 491 (689)
T KOG1000|consen 412 LKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAP 491 (689)
T ss_pred HHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCC
Confidence 11122233333333221 01111 112222 1124
Q ss_pred CCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcC-CceE-EEecccccccCCCCCccEEEEcCC
Q 007044 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMT-LVATNVAARGLDINDVQLIIQCEP 436 (620)
Q Consensus 363 ~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g-~~~v-LvaTdv~~rGlDi~~v~~VI~~d~ 436 (620)
+.+.+||+......+.+...+. ....+.|..++..|....+.|+.. +++| +++-.+++.||++...+.||+..+
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 5689999999998888887776 445688999999999999999864 4454 344567889999999999999999
Q ss_pred CCCHHHHHHHhcccccCCCccEE--EEEeCCC---chHHHHHHHHh
Q 007044 437 PRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR---KSSVSKIERES 477 (620)
Q Consensus 437 P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~---~~~~~~i~~~~ 477 (620)
|+++.-.+|.-.|+.|.|++..+ +.|+... +.....+.+.+
T Consensus 572 ~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 572 HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999999999986544 4455554 44455555544
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=2.3e-13 Score=154.64 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=80.9
Q ss_pred CCCeEEEEEcccccHHHHHHhcccchh--hccccchHHHHHHHHHhhcCCc-eEEEecccccccCCCCC--ccEEEEcCC
Q 007044 362 SGGRTIIFTETKESASQLADLLPGARA--LHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDIND--VQLIIQCEP 436 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~~~~~--lh~~l~~~~R~~~~~~F~~g~~-~vLvaTdv~~rGlDi~~--v~~VI~~d~ 436 (620)
.++++|||++|.+..+.+.+.+..... .+-......+...++.|+.+.- -++|+|..+++|||+|+ ++.||...+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l 557 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL 557 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec
Confidence 346899999999999999999873332 2334444556688899987655 89999999999999997 477888777
Q ss_pred CC------------------------------CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 437 PR------------------------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 437 P~------------------------------s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|. -.....|.+||.-|.-...-++++++.+
T Consensus 558 Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 558 PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 73 2445679999999976666667777877
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=4.9e-14 Score=156.49 Aligned_cols=309 Identities=17% Similarity=0.259 Sum_probs=210.7
Q ss_pred CCcHHHHHHHHHHHc-CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH-
Q 007044 131 SLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD- 208 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~-g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~- 208 (620)
...|+|.++++.+.+ +.++++.||+|||||.++-+.++. + ....++++++|.-+.+..++..+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~---------~~~~~~vyi~p~~~i~~~~~~~w~~ 1208 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P---------DTIGRAVYIAPLEEIADEQYRDWEK 1208 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C---------ccceEEEEecchHHHHHHHHHHHHH
Confidence 347899999998874 567999999999999998877764 1 234469999999999999888874
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC------cHHHH
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG------FVEDV 282 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~------f~~~l 282 (620)
++....|..++-+.|..+.+.. +....+|+|+||.++-. ++ ....+++.|.||+|.+.... ... +
T Consensus 1209 ~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~-lq----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~ 1279 (1674)
T KOG0951|consen 1209 KFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDL-LQ----SIQQVDLFIVDELHLIGGVYGAVYEVICS-M 1279 (1674)
T ss_pred hhccccCceEEecCCccccchH---HhhhcceEEechhHHHH-Hh----hhhhcceEeeehhhhhcccCCceEEEEee-H
Confidence 6777788999988888776543 44568999999999844 43 57788999999999876221 111 4
Q ss_pred HHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceE-EEEEeCCchh-----hhhhHHHH
Q 007044 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR-HIVLPCSSSA-----RSQVIPDI 356 (620)
Q Consensus 283 ~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~-~~~~~~~~~~-----~~~~l~~l 356 (620)
..|...+.+ +.+++.+|..+.+.- .+ .++ .....+.+.....+. +..+. |.+-...... ....+..+
T Consensus 1280 r~ia~q~~k--~ir~v~ls~~lana~-d~--ig~-s~~~v~Nf~p~~R~~-Pl~i~i~~~~~~~~~~~~~am~~~~~~ai 1352 (1674)
T KOG0951|consen 1280 RYIASQLEK--KIRVVALSSSLANAR-DL--IGA-SSSGVFNFSPSVRPV-PLEIHIQSVDISHFESRMLAMTKPTYTAI 1352 (1674)
T ss_pred HHHHHHHHh--heeEEEeehhhccch-hh--ccc-cccceeecCcccCCC-ceeEEEEEeccchhHHHHHHhhhhHHHHH
Confidence 455555544 678888888776632 22 122 233444444333221 11121 1111111111 11234445
Q ss_pred HHhcCCCCeEEEEEcccccHHHHHHhcc--------------------------cchhhccccchHHHHHHHHHhhcCCc
Q 007044 357 IRCYSSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREVTLAGFRSGKF 410 (620)
Q Consensus 357 l~~~~~~~~~iVF~~t~~~~~~l~~~l~--------------------------~~~~lh~~l~~~~R~~~~~~F~~g~~ 410 (620)
.+....+.+++||+++++.|..++.-+- ..++-|-+++......+-.-|..|.+
T Consensus 1353 ~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i 1432 (1674)
T KOG0951|consen 1353 VRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAI 1432 (1674)
T ss_pred HHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcE
Confidence 5555567899999999999988775542 12223889999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEEE----cC------CCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHH
Q 007044 411 MTLVATNVAARGLDINDVQLIIQ----CE------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473 (620)
Q Consensus 411 ~vLvaTdv~~rGlDi~~v~~VI~----~d------~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i 473 (620)
.|+|...- -.|+-...--+|+. || .+.+.....|+.|+|.| .|.|+++.... ..+++++
T Consensus 1433 ~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1433 QVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 99998755 66665543333332 33 45668899999999988 57899998877 6555544
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=1.2e-14 Score=137.54 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=103.1
Q ss_pred CCcHHHHHHHHHHHc-------CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLD-------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~-------g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
+|+|+|.+++..+.. .+.+++.+|||||||.+++..+..... ++++++|+..|+.|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------------ceeEecCHHHHHHHH
Confidence 589999999999883 689999999999999998865555443 289999999999999
Q ss_pred HHHHHHhhcCCCceEE-----------EEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC-----------ccCCC
Q 007044 204 HEDFDVYGGAVGLTSC-----------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-----------IDLSS 261 (620)
Q Consensus 204 ~~~~~~~~~~~~~~v~-----------~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~-----------~~l~~ 261 (620)
.+.|..+......... ...................+|+++|...+........ .....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 67 YDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 9999766543211100 0111111122223334578999999999988765321 23456
Q ss_pred ccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 262 l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
..+||+||||++....- +..++. . ....+++||||++
T Consensus 147 ~~~vI~DEaH~~~~~~~---~~~i~~-~---~~~~~l~lTATp~ 183 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSS---YREIIE-F---KAAFILGLTATPF 183 (184)
T ss_dssp ESEEEEETGGCTHHHHH---HHHHHH-S---SCCEEEEEESS-S
T ss_pred CCEEEEehhhhcCCHHH---HHHHHc-C---CCCeEEEEEeCcc
Confidence 78999999998864331 444544 2 2568999999964
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.55 E-value=3.3e-12 Score=144.31 Aligned_cols=112 Identities=22% Similarity=0.301 Sum_probs=79.8
Q ss_pred CCCeEEEEEcccccHHHHHHhccc----chhhccccchHHHHHHHHHhh----cCCceEEEecccccccCCCCC--ccEE
Q 007044 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR----SGKFMTLVATNVAARGLDIND--VQLI 431 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~lh~~l~~~~R~~~~~~F~----~g~~~vLvaTdv~~rGlDi~~--v~~V 431 (620)
.++.+|||++|....+.++..|.. -...+|. ..|..+++.|+ .|+-.||++|..++.|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 445689999999999999888752 1123443 35677887776 467789999999999999997 7889
Q ss_pred EEcCCCC----CH--------------------------HHHHHHhcccccCCCccEEEEEeCCC---chHHHHHHHH
Q 007044 432 IQCEPPR----DV--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERE 476 (620)
Q Consensus 432 I~~d~P~----s~--------------------------~~yiqr~GRtgR~g~~G~~i~l~~~~---~~~~~~i~~~ 476 (620)
|...+|. ++ ..+.|.+||.-|....--++++++++ ..+-+.+.+.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~s 687 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDA 687 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHh
Confidence 9877663 11 23358889999987654467778887 2344455443
No 151
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.52 E-value=9.1e-13 Score=144.89 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=95.7
Q ss_pred hhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCC--ceEEEecccc
Q 007044 347 SARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVA 419 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~--~~vLvaTdv~ 419 (620)
..|+..|.-||+.+. .+.++|||+...+..+-|..+|. ....|.|....++|...+++|.... +..+++|-..
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 346667777776553 67899999999999999988886 3445678889999999999998643 4667899999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCc--cEEEEEeCCC
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT--GVAVMLYDPR 466 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~--G~~i~l~~~~ 466 (620)
+.|||+-+.+.||+||-.|++..-.|.--|+.|.|+. =..|.|++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999987777666666666663 3457778776
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.52 E-value=1.1e-12 Score=145.45 Aligned_cols=282 Identities=12% Similarity=0.120 Sum_probs=168.7
Q ss_pred ECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHH-
Q 007044 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ- 230 (620)
Q Consensus 152 ~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~- 230 (620)
.+-+|||||.+|+-.+-..+..++ ++|||+|...|+.|+...|+..+. +..+..++++.+....
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk-------------~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGR-------------GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHH
Confidence 334699999999988888887654 399999999999999999987653 2457778877665433
Q ss_pred ---HHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc---C---cHHHHHHHHHhccccCCceEEeec
Q 007044 231 ---EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM---G---FVEDVELILGKVEDANKVQTLLFS 301 (620)
Q Consensus 231 ---~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~---~---f~~~l~~il~~~~~~~~~q~ll~S 301 (620)
.......+.|||||-..+ ...+.++.+||+||=|.-.-. + ...++........ +..+++-|
T Consensus 231 ~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~---~~~lvLgS 300 (665)
T PRK14873 231 RRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH---GCALLIGG 300 (665)
T ss_pred HHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc---CCcEEEEC
Confidence 333445689999997766 446889999999999854311 1 1233444444433 57899999
Q ss_pred CCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC------Cch----hhhhhHHHHHHhcCCCCeEEEEEc
Q 007044 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC------SSS----ARSQVIPDIIRCYSSGGRTIIFTE 371 (620)
Q Consensus 302 ATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~------~~~----~~~~~l~~ll~~~~~~~~~iVF~~ 371 (620)
||.+-.....+..- ....+.............+.-.-... ... --..++..+-+.+..+ ++|||+|
T Consensus 301 aTPSles~~~~~~g---~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~ln 376 (665)
T PRK14873 301 HARTAEAQALVESG---WAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVP 376 (665)
T ss_pred CCCCHHHHHHHhcC---cceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEec
Confidence 99766544332211 11111111000000011111111000 000 1123444455555566 9999999
Q ss_pred ccccHHH---------------------------------------------------------------HHHhcccchh
Q 007044 372 TKESASQ---------------------------------------------------------------LADLLPGARA 388 (620)
Q Consensus 372 t~~~~~~---------------------------------------------------------------l~~~l~~~~~ 388 (620)
.+--+-. |...|..+.+
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V 456 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPV 456 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCE
Confidence 5443321 1111111111
Q ss_pred hccccchHHHHHHHHHhhcCCceEEEecc----cccccCCCCCccEEEEcCC------CC------CHHHHHHHhccccc
Q 007044 389 LHGDIQQSQREVTLAGFRSGKFMTLVATN----VAARGLDINDVQLIIQCEP------PR------DVEAYIHRSGRTGR 452 (620)
Q Consensus 389 lh~~l~~~~R~~~~~~F~~g~~~vLvaTd----v~~rGlDi~~v~~VI~~d~------P~------s~~~yiqr~GRtgR 452 (620)
+. .+++.+++.|. ++.+|||+|. +++ +++++|+..|. |. ...-+.|-+||+||
T Consensus 457 ~r-----~d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr 525 (665)
T PRK14873 457 VT-----SGGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRP 525 (665)
T ss_pred EE-----EChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcC
Confidence 11 12345788886 5899999998 665 36677766553 32 24555788899999
Q ss_pred CCCccEEEEEeCCCchHHHHH
Q 007044 453 AGNTGVAVMLYDPRKSSVSKI 473 (620)
Q Consensus 453 ~g~~G~~i~l~~~~~~~~~~i 473 (620)
.+..|.+++...+....+..+
T Consensus 526 ~~~~G~V~iq~~p~~~~~~~l 546 (665)
T PRK14873 526 RADGGQVVVVAESSLPTVQAL 546 (665)
T ss_pred CCCCCEEEEEeCCCCHHHHHH
Confidence 999999988766655444444
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.51 E-value=1.5e-12 Score=132.24 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=92.1
Q ss_pred CeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcC-CceEE-EecccccccCCCCCccEEEEcCCC
Q 007044 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMTL-VATNVAARGLDINDVQLIIQCEPP 437 (620)
Q Consensus 364 ~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g-~~~vL-vaTdv~~rGlDi~~v~~VI~~d~P 437 (620)
-+.|||.+--...+.+.-.|. .+.-|-|.|++..|...++.|.+. +++|+ ++-.+.+..+|+...++|+..|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 367787777666666666665 445688999999999999999874 56664 555777788999999999999999
Q ss_pred CCHHHHHHHhcccccCCC--ccEEEEEeCCC--chHHHHHHHHhCCCce
Q 007044 438 RDVEAYIHRSGRTGRAGN--TGVAVMLYDPR--KSSVSKIERESGVKFE 482 (620)
Q Consensus 438 ~s~~~yiqr~GRtgR~g~--~G~~i~l~~~~--~~~~~~i~~~~~~~~~ 482 (620)
|++.--.|.-.|..|.|+ +=.++.|+-.. +..+-.+++....-|.
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mih 767 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIH 767 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhh
Confidence 999999999999999997 55677777666 6667667665443333
No 154
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.47 E-value=7.3e-14 Score=113.35 Aligned_cols=70 Identities=47% Similarity=0.752 Sum_probs=67.5
Q ss_pred cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCC
Q 007044 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (620)
Q Consensus 385 ~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g 454 (620)
.+..+||++++.+|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|.|++||++|.|
T Consensus 13 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 13 KVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999986
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.46 E-value=2.5e-12 Score=144.13 Aligned_cols=322 Identities=19% Similarity=0.146 Sum_probs=183.5
Q ss_pred CCCCcHHHHHHHHHHHc--------CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 129 IESLFPIQAMTFDMVLD--------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~--------g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
-..-+.+|-+|+..+.. |-=+|-.|.||+|||++=+= |...|... ..+.|..|-.-.|.|.
T Consensus 406 ~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~----------~~g~RfsiALGLRTLT 474 (1110)
T TIGR02562 406 AHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD----------KQGARFAIALGLRSLT 474 (1110)
T ss_pred CCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC----------CCCceEEEEcccccee
Confidence 34557899999988763 22266779999999997543 33344432 3566888999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEeCCcchHHHH-------------------------------------------HHhcC-
Q 007044 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE-------------------------------------------FKLKK- 236 (620)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~-------------------------------------------~~l~~- 236 (620)
.|..+.++.-..-..-...+++||.....-. ..+..
T Consensus 475 LQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~ 554 (1110)
T TIGR02562 475 LQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLD 554 (1110)
T ss_pred ccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccC
Confidence 9999888765433334455555553221100 00000
Q ss_pred -------CCcEEEeChHHHHHHHh--cC-CccCC----CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecC
Q 007044 237 -------GIDVVIGTPGRIKDHIE--RG-NIDLS----SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 237 -------~~~IlV~Tp~rl~~~l~--~~-~~~l~----~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
...|+|||+..++.... ++ ...+. .=+.|||||+|.+- ..-...+..++..+.. -...++++||
T Consensus 555 ~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~-lG~~VlLmSA 632 (1110)
T TIGR02562 555 DKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGL-LGSRVLLSSA 632 (1110)
T ss_pred hhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHH-cCCCEEEEeC
Confidence 26899999999988763 22 11111 12579999999763 2223334444443222 1468999999
Q ss_pred CCChHHHHH-HHHhcc---------c---CCcEEEEec-Ccc----------------------------cccccceEEE
Q 007044 303 TLPSWVKHI-STKFLK---------S---DKKTIDLVG-NEK----------------------------MKASTNVRHI 340 (620)
Q Consensus 303 Tl~~~~~~~-~~~~~~---------~---~~~~i~~~~-~~~----------------------------~~~~~~i~~~ 340 (620)
|+|+.+... ...|.. . .+..|...- .+. ......-.-.
T Consensus 633 TLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~ 712 (1110)
T TIGR02562 633 TLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAE 712 (1110)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEE
Confidence 999975433 233311 1 111111110 000 0000001111
Q ss_pred EEeCCchh-----hhh--------hHHHHHHhcC-----CCCe---EEEEEcccccHHHHHHhcc----------cchhh
Q 007044 341 VLPCSSSA-----RSQ--------VIPDIIRCYS-----SGGR---TIIFTETKESASQLADLLP----------GARAL 389 (620)
Q Consensus 341 ~~~~~~~~-----~~~--------~l~~ll~~~~-----~~~~---~iVF~~t~~~~~~l~~~l~----------~~~~l 389 (620)
.++++... ... .+..+.+.+. .+.+ .+|=++++..+-.++..|. .+.++
T Consensus 713 i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~y 792 (1110)
T TIGR02562 713 LLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCY 792 (1110)
T ss_pred EeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEe
Confidence 22232221 111 1111111111 1122 4677777777766666554 35678
Q ss_pred ccccchHHHHHHHHHh----------------------hc----CCceEEEecccccccCCCCCccEEEEcCCCCCHHHH
Q 007044 390 HGDIQQSQREVTLAGF----------------------RS----GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443 (620)
Q Consensus 390 h~~l~~~~R~~~~~~F----------------------~~----g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~y 443 (620)
|+......|..+.+.. .+ +...|+|+|.+.+.|+|+. .+++| .-|.+..+.
T Consensus 793 HSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sl 869 (1110)
T TIGR02562 793 HAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSI 869 (1110)
T ss_pred cccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHH
Confidence 9998777776655442 12 4678999999999999983 55554 356779999
Q ss_pred HHHhcccccCCCcc---EEEEEeCCC
Q 007044 444 IHRSGRTGRAGNTG---VAVMLYDPR 466 (620)
Q Consensus 444 iqr~GRtgR~g~~G---~~i~l~~~~ 466 (620)
+||+||+.|.|..- .-+.++..+
T Consensus 870 iQ~aGR~~R~~~~~~~~~N~~i~~~N 895 (1110)
T TIGR02562 870 IQLAGRVNRHRLEKVQQPNIVILQWN 895 (1110)
T ss_pred HHHhhcccccccCCCCCCcEEEeHhH
Confidence 99999999987622 125555554
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=3.6e-11 Score=136.94 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=58.8
Q ss_pred CCCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
|..++|.|.+.+..+. .|+++++.||||+|||++.+.|++......+ ..++++|.+.|..-..|+.
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----------~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----------EVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----------ccccEEEEcccchHHHHHH
Confidence 5667999998776644 7899999999999999999999998776432 2346899999998888988
Q ss_pred HHHHHh
Q 007044 205 EDFDVY 210 (620)
Q Consensus 205 ~~~~~~ 210 (620)
+++++.
T Consensus 78 ~Elk~~ 83 (705)
T TIGR00604 78 EELRKL 83 (705)
T ss_pred HHHHhh
Confidence 888874
No 157
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.37 E-value=1.4e-12 Score=142.80 Aligned_cols=317 Identities=18% Similarity=0.242 Sum_probs=194.4
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
-++.+||...+.++. ++-+-|+...+|-|||.+-. .++..+..... ..+|+ ||++|+-.|.+. ..
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtI-sLitYLmE~K~--------~~GP~-LvivPlstL~NW-~~ 461 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTI-SLITYLMEHKQ--------MQGPF-LIIVPLSTLVNW-SS 461 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHH-HHHHHHHHHcc--------cCCCe-EEeccccccCCc-hh
Confidence 388899999998865 34678999999999997643 33333333221 24444 999999888874 56
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHH---HHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHH
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQ---EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~---~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l 282 (620)
+|..|+.. +.... |-|.+..+. .......++|+++|++.++. .+..+.--++.++||||.|+|-+.. ..+
T Consensus 462 Ef~kWaPS--v~~i~-YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KL 534 (1157)
T KOG0386|consen 462 EFPKWAPS--VQKIQ-YKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKL 534 (1157)
T ss_pred hccccccc--eeeee-eeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHH
Confidence 67777643 44333 334432221 11223579999999998865 1111222235689999999986432 112
Q ss_pred HHHHHhccccCCceEEeecCC-----------------------------------------------------------
Q 007044 283 ELILGKVEDANKVQTLLFSAT----------------------------------------------------------- 303 (620)
Q Consensus 283 ~~il~~~~~~~~~q~ll~SAT----------------------------------------------------------- 303 (620)
...+...-. ....+++++|
T Consensus 535 t~~L~t~y~--~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkV 612 (1157)
T KOG0386|consen 535 TDTLNTHYR--AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKV 612 (1157)
T ss_pred HHHhhcccc--chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHh
Confidence 222221111 1233444444
Q ss_pred ----------------CChHHHHHHHHhccc-----------CC-cEEEE---ecCcc---------------cccccce
Q 007044 304 ----------------LPSWVKHISTKFLKS-----------DK-KTIDL---VGNEK---------------MKASTNV 337 (620)
Q Consensus 304 ----------------l~~~~~~~~~~~~~~-----------~~-~~i~~---~~~~~---------------~~~~~~i 337 (620)
+|..+..+.+.-+.. .. ..++- ..+.. +....++
T Consensus 613 LRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 613 LRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred hhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 122221111111100 00 00000 00000 0000000
Q ss_pred EEEE-------EeCCchhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHh
Q 007044 338 RHIV-------LPCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405 (620)
Q Consensus 338 ~~~~-------~~~~~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F 405 (620)
...+ -....+.+..+|..++-.+ ..++++|.||........+.++|. ....+.|.....+|...+..|
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 0000 0011245667777777654 367899999999998888888887 566788999999999999999
Q ss_pred hcCC---ceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--EEEeCCC
Q 007044 406 RSGK---FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (620)
Q Consensus 406 ~~g~---~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~ 466 (620)
..-. +.+|.+|...+.|+|+.-.+.||.||.-|++-...|+.-|+.|.|+.-.+ +.+++..
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 8643 46788999999999999999999999999999999999999999986655 4444433
No 158
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.30 E-value=2.1e-12 Score=106.84 Aligned_cols=77 Identities=49% Similarity=0.701 Sum_probs=53.5
Q ss_pred CCcccccccccCCCCCcEEEEEEcCCCCCCcchHHHHHHhhCCcccccceeeEEEecCCCeEEEEccCCChHHhhcc
Q 007044 543 GYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 619 (620)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
||++++.|||+++.+|++|+.+..++++.+++++|++|++.+++...+.|++|++.+|++|+|||||++.++.+++.
T Consensus 1 G~t~~~~RSLLt~~~g~vTl~l~~~~~i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~~GavFDvP~~~~~~~~~~ 77 (97)
T PF08152_consen 1 GYTEIKQRSLLTSEEGFVTLQLTCSREIRSPGYAWRILRRQLSEEIADKVKGMTLLKDKMGAVFDVPSEIAEEFLAK 77 (97)
T ss_dssp S-S-------------EEEEEEE-SS--SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTSSEEEEEEEHHHHHHHHHH
T ss_pred CCCCCCccccccCCCCCEEEEEEcCCcCCCchhHHHHHHHhcCHHHHHhhCcEEEecCCCEEEEEChHHHHHHHHHh
Confidence 67788999999999999999999999999999999999999998878999999999999999999999999998763
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.29 E-value=2.4e-10 Score=125.41 Aligned_cols=288 Identities=18% Similarity=0.199 Sum_probs=175.4
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCc
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~ 225 (620)
..-.++.||+|||||.+..-++-+.+.. ..-++|+|+.++.|+.+++..|+..+- .++....-.++.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~------------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~ 115 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKN------------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDY 115 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccC------------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccc
Confidence 3457899999999998876655554432 223599999999999999999875431 122211111111
Q ss_pred chHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHH------HHHH-hccccCCceEE
Q 007044 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE------LILG-KVEDANKVQTL 298 (620)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~------~il~-~~~~~~~~q~l 298 (620)
... ....+-+++..+.|..+- .-.+.++++|||||+...+..-|.+.+. .++. .+.. ...+|
T Consensus 116 ~i~------~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI 184 (824)
T PF02399_consen 116 IID------GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVI 184 (824)
T ss_pred ccc------ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEE
Confidence 010 013567777777775543 2236678999999999988653332222 2222 2333 35789
Q ss_pred eecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe-----------------------------------
Q 007044 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP----------------------------------- 343 (620)
Q Consensus 299 l~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~----------------------------------- 343 (620)
++-||+....-++...+. +...|.++.++.....-.-++.++.
T Consensus 185 ~~DA~ln~~tvdFl~~~R--p~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (824)
T PF02399_consen 185 VMDADLNDQTVDFLASCR--PDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATA 262 (824)
T ss_pred EecCCCCHHHHHHHHHhC--CCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccc
Confidence 999999999888888864 2222333222210000000000000
Q ss_pred CCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
............++..+..|.++-||+.|...++.+++... .+..++|.-+..+ + +. =++++|+|.|.++
T Consensus 263 ~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~i 336 (824)
T PF02399_consen 263 AISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVI 336 (824)
T ss_pred ccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceE
Confidence 00122334566666777778889999999999888887765 5566666555442 2 21 3578999999999
Q ss_pred cccCCCCCccE--EEEcCCC----CCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 420 ARGLDINDVQL--IIQCEPP----RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 420 ~rGlDi~~v~~--VI~~d~P----~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
..|+++....+ |.-|=-| .+..+..|.+||.-.. .....++.++..
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 99999976533 4444223 3466789999999444 445555555544
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.24 E-value=3.1e-10 Score=125.36 Aligned_cols=322 Identities=20% Similarity=0.253 Sum_probs=191.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.|+.+|.-.- +.....-|.-..||-|||++..+|+.-..+.+.. +.+++..--||..-++++..+
T Consensus 80 ~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg-------------VhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 80 RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG-------------VHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred ChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC-------------cEEeeehHHhhhhCHHHHHHH
Confidence 4555665444 4444456889999999999999998765555543 889999999999999999999
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhc------CCccCCCccEEEeccchhhhh--------
Q 007044 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEMLR-------- 275 (620)
Q Consensus 211 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~------~~~~l~~l~~lVlDEah~~l~-------- 275 (620)
..++|+++++...+.+...+.... .+||..+|...| .|.+.. .......+.+.|+||+|.++=
T Consensus 145 ~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 145 YEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccccee
Confidence 999999999999998766554444 499999998776 333321 123355789999999999761
Q ss_pred --c------CcHHHHHHHHHhccccC------CceEEeecCC------------------CChHH---H-HH-HHHhccc
Q 007044 276 --M------GFVEDVELILGKVEDAN------KVQTLLFSAT------------------LPSWV---K-HI-STKFLKS 318 (620)
Q Consensus 276 --~------~f~~~l~~il~~~~~~~------~~q~ll~SAT------------------l~~~~---~-~~-~~~~~~~ 318 (620)
. .++..+..+...+.... ..+.+.|+-. -...+ . .+ +...+..
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred eecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhc
Confidence 1 12334444443332210 1112222111 00000 0 00 0011111
Q ss_pred CCcEEE------EecCcc------------------------------------------------------------cc
Q 007044 319 DKKTID------LVGNEK------------------------------------------------------------MK 332 (620)
Q Consensus 319 ~~~~i~------~~~~~~------------------------------------------------------------~~ 332 (620)
+...|- +++... ..
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhh
Confidence 111110 000000 00
Q ss_pred cccceEEEEEe----------------CCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcccchhhc----cc
Q 007044 333 ASTNVRHIVLP----------------CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALH----GD 392 (620)
Q Consensus 333 ~~~~i~~~~~~----------------~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~lh----~~ 392 (620)
.-.+...++++ .....-..++..+...+..+.|+||-+.+....+.+...|....+-| +.
T Consensus 383 ~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 383 VIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred hccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccc
Confidence 00111111111 11122335667777788899999999999999999999998555444 33
Q ss_pred cchHHHHHHHHHhhcCCceEEEecccccccCCCCCcc-----------EEEEcCCCCCHHHHHHHhcccccCCCccEEEE
Q 007044 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ-----------LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461 (620)
Q Consensus 393 l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~-----------~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~ 461 (620)
-...+-+.+.+.-+.| .|-|||++|+||-||.--. +||--..-.|-.---|--||+||-|-+|.+-.
T Consensus 463 ~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F 540 (822)
T COG0653 463 NHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRF 540 (822)
T ss_pred cHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhh
Confidence 3322223333333333 6789999999999986332 24433333333333477799999999999988
Q ss_pred EeCCCchHHH
Q 007044 462 LYDPRKSSVS 471 (620)
Q Consensus 462 l~~~~~~~~~ 471 (620)
|++-....++
T Consensus 541 ~lSleD~L~r 550 (822)
T COG0653 541 YLSLEDDLMR 550 (822)
T ss_pred hhhhHHHHHH
Confidence 7776643333
No 161
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.21 E-value=3.5e-10 Score=119.62 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=99.9
Q ss_pred hhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCc-eEEEeccccc
Q 007044 347 SARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAA 420 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~-~vLvaTdv~~ 420 (620)
+.++..|..++..+. .+.++|+|++.-+..+.+.++|. ....|.|.....+|..++..|+..++ -+|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 456667777776553 56799999999999999988886 45568899999999999999998654 5678999999
Q ss_pred ccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccE--EEEEeCCC
Q 007044 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV--AVMLYDPR 466 (620)
Q Consensus 421 rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~--~i~l~~~~ 466 (620)
-||++...+.||+||-.|++..-.|...||.|.|+.-. ++.++...
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 99999999999999999999999999999999998543 45555544
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.19 E-value=1.8e-10 Score=124.78 Aligned_cols=304 Identities=18% Similarity=0.243 Sum_probs=182.2
Q ss_pred HHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH-----hhc
Q 007044 138 MTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-----YGG 212 (620)
Q Consensus 138 ~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~-----~~~ 212 (620)
..+..+..+.-+++.+.||+|||..+.--+|+.+..+.... ..-+.+--|||-.+.-+++.+.. .+.
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~--------~~na~v~qprrisaisiaerva~er~e~~g~ 456 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA--------SFNAVVSQPRRISAISLAERVANERGEEVGE 456 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc--------cccceeccccccchHHHHHHHHHhhHHhhcc
Confidence 34445556777999999999999999999999988764322 22367778999888888776632 222
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhcc-c
Q 007044 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE-D 291 (620)
Q Consensus 213 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~-~ 291 (620)
.++.++-.. ..-....--|+.||-|-++..++.+ +..+.++|+||.|+.--.+ +-+..++..+. .
T Consensus 457 tvgy~vRf~---------Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~~t 522 (1282)
T KOG0921|consen 457 TCGYNVRFD---------SATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMIST 522 (1282)
T ss_pred ccccccccc---------ccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhhcc
Confidence 222222110 0011112459999999999998875 4567789999999753211 11222222211 1
Q ss_pred cCCceEEeecCC----------------------CChHHHHHHHHhcccCCcEEE----------EecCcccccccceEE
Q 007044 292 ANKVQTLLFSAT----------------------LPSWVKHISTKFLKSDKKTID----------LVGNEKMKASTNVRH 339 (620)
Q Consensus 292 ~~~~q~ll~SAT----------------------l~~~~~~~~~~~~~~~~~~i~----------~~~~~~~~~~~~i~~ 339 (620)
.+...++++||| +|-....+.. +. .....+. ............-+.
T Consensus 523 y~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led-~~-~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 523 YRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLED-II-QMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred chhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHH-hh-hhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 113444555555 4432111110 00 0000000 000000000000000
Q ss_pred EEEeCC----------------chhhhhhHHHHHH---hcCCCCeEEEEEcccccHHHHHHhcc-----------cchhh
Q 007044 340 IVLPCS----------------SSARSQVIPDIIR---CYSSGGRTIIFTETKESASQLADLLP-----------GARAL 389 (620)
Q Consensus 340 ~~~~~~----------------~~~~~~~l~~ll~---~~~~~~~~iVF~~t~~~~~~l~~~l~-----------~~~~l 389 (620)
.-..|. ......++..++. ...-.+.++||.+.-...-.|+..+. .+..+
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~ 680 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPL 680 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccc
Confidence 000000 0001122222222 22344789999999888888887765 56678
Q ss_pred ccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCC------------------CCHHHHHHHhcccc
Q 007044 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP------------------RDVEAYIHRSGRTG 451 (620)
Q Consensus 390 h~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P------------------~s~~~yiqr~GRtg 451 (620)
|+.+...+..++.+....|..++++.|+++...+.+.++..||..+.- .+....+||.||+|
T Consensus 681 Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 681 HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 999999999999999999999999999999999999998888864422 35567799999999
Q ss_pred cCCCccEEEEEeCCC
Q 007044 452 RAGNTGVAVMLYDPR 466 (620)
Q Consensus 452 R~g~~G~~i~l~~~~ 466 (620)
|. ++|.|..+++..
T Consensus 761 rv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 761 RV-RPGFCFHLCSRA 774 (1282)
T ss_pred ee-cccccccccHHH
Confidence 98 789998877655
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.18 E-value=4.1e-10 Score=122.41 Aligned_cols=118 Identities=16% Similarity=0.225 Sum_probs=95.5
Q ss_pred hhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc--------------------------cchhhccccchHHHHHH
Q 007044 349 RSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREVT 401 (620)
Q Consensus 349 ~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~--------------------------~~~~lh~~l~~~~R~~~ 401 (620)
++-+|..||... .-|.+.|||.++....+.+..+|. ....|.|.....+|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344566666543 357899999999999988888875 23457889999999999
Q ss_pred HHHhhcC----CceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--EEEeCCC
Q 007044 402 LAGFRSG----KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (620)
Q Consensus 402 ~~~F~~g----~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~ 466 (620)
...|.+- -.-.||+|-+.+-|||+-+.+-||.||..|+|.--.|-+=|+.|.|+.--| |.|+...
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 9999863 234789999999999999999999999999999999999999999985544 4555544
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.15 E-value=2.2e-10 Score=100.39 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=80.8
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHH-HHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILE-SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~-~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g 223 (620)
.|+--++-..+|+|||.-.+.-++. .+.. +.|+|||.|||.++..+++.++. .++++....-
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------------~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~ 65 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-------------RLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNAR 65 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------------T--EEEEESSHHHHHHHHHHTTT----SSEEEESTTS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-------------cCeEEEecccHHHHHHHHHHHhc----CCcccCceee
Confidence 3455688899999999865544444 3433 33599999999999999888753 2333332211
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+. ....+.-|-|+|.+.+.+.+.+ ...+.+++++|+||||-+ |..-.--.- .+..........+|++|||
T Consensus 66 ~~-------~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~rg-~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 66 MR-------THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAARG-YLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp S-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHH-HHHHHHHTTS-EEEEEESS
T ss_pred ec-------cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhhhe-eHHHhhhccCeeEEEEeCC
Confidence 11 1234567889999999888776 445789999999999976 322111111 2222222224679999999
Q ss_pred CChHH
Q 007044 304 LPSWV 308 (620)
Q Consensus 304 l~~~~ 308 (620)
.|-..
T Consensus 136 PPG~~ 140 (148)
T PF07652_consen 136 PPGSE 140 (148)
T ss_dssp -TT--
T ss_pred CCCCC
Confidence 87643
No 165
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.15 E-value=1.1e-09 Score=129.18 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=97.9
Q ss_pred hhhhhHHHHH-H-hcCCCC--eEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcC--CceEEEecc
Q 007044 348 ARSQVIPDII-R-CYSSGG--RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG--KFMTLVATN 417 (620)
Q Consensus 348 ~~~~~l~~ll-~-~~~~~~--~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g--~~~vLvaTd 417 (620)
.+...+..++ . ....+. ++|||++......-+...+. ....++|.++...|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4556666666 2 333455 89999999999988888776 456789999999999999999985 456677788
Q ss_pred cccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--EEEeCCC
Q 007044 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~ 466 (620)
+++.|+|+...++||+||..+++....|...|+.|.|+...+ +.++...
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 999999999999999999999999999999999999987654 4555554
No 166
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.14 E-value=8.4e-10 Score=117.10 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=82.8
Q ss_pred CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhh--cCCceEEE-ecccccccCCCCCccEEEEc
Q 007044 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR--SGKFMTLV-ATNVAARGLDINDVQLIIQC 434 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~--~g~~~vLv-aTdv~~rGlDi~~v~~VI~~ 434 (620)
...+++|...-.....-+...+. ....+||.....+|..+++.|. +|..+|++ +-...+.|||+-+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 44566665544444444445554 4567899999999999999995 45566655 44667789999999999999
Q ss_pred CCCCCHHHHHHHhcccccCCCccEEEE--EeCCC--chHHHHHHH
Q 007044 435 EPPRDVEAYIHRSGRTGRAGNTGVAVM--LYDPR--KSSVSKIER 475 (620)
Q Consensus 435 d~P~s~~~yiqr~GRtgR~g~~G~~i~--l~~~~--~~~~~~i~~ 475 (620)
|+-|++.-=.|.+-|..|.|++..++. |+-.. +..+..++.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQd 869 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQD 869 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999998765532 33333 444544443
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.12 E-value=6.2e-10 Score=114.07 Aligned_cols=154 Identities=19% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHHHHHHHHH-------------cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 135 IQAMTFDMVL-------------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 135 ~Q~~~i~~il-------------~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
+|.+++..++ ..+.+|++..+|+|||+..+..+......... ...-.+|||||. .+..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~--------~~~~~~LIv~P~-~l~~ 71 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQ--------RGEKKTLIVVPS-SLLS 71 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTT--------SS-S-EEEEE-T-TTHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccc--------ccccceeEeecc-chhh
Confidence 5777776653 33679999999999998766555432322211 011238999999 8889
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHH-----HHHhcCCccCCCccEEEeccchhhhhc
Q 007044 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-----DHIERGNIDLSSLKFRVLDEADEMLRM 276 (620)
Q Consensus 202 Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~-----~~l~~~~~~l~~l~~lVlDEah~~l~~ 276 (620)
||..++..+.....+++..+.|+..............+|+|+|+..+. .... .+.--++++||+||+|.+-+.
T Consensus 72 ~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 72 QWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTT
T ss_pred hhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEecccccccc
Confidence 999999999865556766666655222222333456899999999998 1111 111234789999999998433
Q ss_pred CcHHHHHHHHHhccccCCceEEeecCCC
Q 007044 277 GFVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 277 ~f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
. ......+..+. ....+++|||.
T Consensus 150 ~--s~~~~~l~~l~---~~~~~lLSgTP 172 (299)
T PF00176_consen 150 D--SKRYKALRKLR---ARYRWLLSGTP 172 (299)
T ss_dssp T--SHHHHHHHCCC---ECEEEEE-SS-
T ss_pred c--ccccccccccc---cceEEeecccc
Confidence 3 22333333344 35789999994
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.3e-09 Score=110.39 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCcHHHHHHH----HHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i----~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+...... ..+.+++|.++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4699999944 4456889999999999999999999998776653221 0234699999999999998777
Q ss_pred HHHh
Q 007044 207 FDVY 210 (620)
Q Consensus 207 ~~~~ 210 (620)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7655
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.3e-09 Score=110.39 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCcHHHHHHH----HHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i----~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+...... ..+.+++|.++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4699999944 4456889999999999999999999998776653221 0234699999999999998777
Q ss_pred HHHh
Q 007044 207 FDVY 210 (620)
Q Consensus 207 ~~~~ 210 (620)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7655
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.03 E-value=5.3e-09 Score=103.14 Aligned_cols=130 Identities=23% Similarity=0.331 Sum_probs=99.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|++.|..++=.+..|+ |+...||-|||++..+|++-....+.. |-|++.+..||..=+++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~-------------V~vvT~NdyLA~RD~~~ 137 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKG-------------VHVVTSNDYLAKRDAEE 137 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS--------------EEEEESSHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCC-------------cEEEeccHHHhhccHHH
Confidence 344 89999999997787777 999999999999999988777766543 89999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHH-HHHhc----CCc--cCCCccEEEeccchhhh
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIER----GNI--DLSSLKFRVLDEADEML 274 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~-~~l~~----~~~--~l~~l~~lVlDEah~~l 274 (620)
+..+...+|+++.+++++.+........ .++|+.+|...+. |.|.. +.. ..+.+.++|+||||.|+
T Consensus 138 ~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 138 MRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999999998754433222 3789999998873 44432 111 25788999999999987
No 171
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.69 E-value=1.8e-08 Score=79.59 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=45.4
Q ss_pred EEEEEEcCCC-CCCcchHHHHHHhhCCcccccceeeEEEecCCCeEEEEccCCChHHhhccC
Q 007044 560 VTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGT 620 (620)
Q Consensus 560 ~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (620)
++++++.|+. .++|++++++|++..+..+ .+||+|+|++ +||+|+||+++++++++++
T Consensus 1 vrl~in~Gr~dg~~~~~iv~~i~~~~gi~~-~~IG~I~I~~--~~S~vev~~~~a~~v~~~l 59 (74)
T PF03880_consen 1 VRLFINVGRKDGLTPRDIVGAICNEAGIPG-RDIGRIDIFD--NFSFVEVPEEVAEKVLEAL 59 (74)
T ss_dssp -EEEES-SGGGT--HHHHHHHHHTCTTB-G-GGEEEEEE-S--S-EEEEE-TT-HHHHHHHH
T ss_pred CEEEEEcccccCCCHHHHHHHHHhccCCCH-HhEEEEEEee--eEEEEEECHHHHHHHHHHh
Confidence 5899999998 8999999999999998875 7999999999 8999999999999998753
No 172
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.66 E-value=3.1e-06 Score=98.85 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=89.4
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~ 226 (620)
+..+++=-||||||++..-.+- .+... ...|.+++|+-+++|-.|+.++|..++....... ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~----------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL----------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc----------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccC
Confidence 4699999999999997543332 23222 2456799999999999999999998875432211 2233
Q ss_pred hHHHHHHhcCC-CcEEEeChHHHHHHHhcC-CccC-CCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 227 YHAQEFKLKKG-IDVVIGTPGRIKDHIERG-NIDL-SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 227 ~~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~-~~~l-~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
...-...+..+ -.|+|+|-..|-..+... ...+ .+=-+||+||||+- .++..-..+-..++ +...++||+|
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~---~a~~~gFTGT 412 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK---KAIFIGFTGT 412 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc---cceEEEeeCC
Confidence 33333444433 489999999997777543 1111 22236899999964 33333344444444 3689999999
Q ss_pred C
Q 007044 304 L 304 (620)
Q Consensus 304 l 304 (620)
.
T Consensus 413 P 413 (962)
T COG0610 413 P 413 (962)
T ss_pred c
Confidence 5
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.44 E-value=4.7e-06 Score=94.77 Aligned_cols=68 Identities=10% Similarity=-0.049 Sum_probs=50.5
Q ss_pred hcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 234 l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+.....|+++||..|..-|..+.++++.+..||+||||++....-..-+..++..-+. ..-+.+|||.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~--~gfIkafSds 71 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK--TGFIKAFSDN 71 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC--CcceEEecCC
Confidence 3445789999999998888888999999999999999998755544445555544433 3455666666
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.42 E-value=1.1e-07 Score=105.60 Aligned_cols=259 Identities=20% Similarity=0.202 Sum_probs=149.4
Q ss_pred CcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 132 LFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 132 ~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
..|+|.+.+..+. ...++++-+|||+|||++|-+.++..+...+. -+++|++|-..|...-.+.+...
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-----------~kvvyIap~kalvker~~Dw~~r 996 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-----------SKVVYIAPDKALVKERSDDWSKR 996 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-----------ccEEEEcCCchhhcccccchhhh
Confidence 3445655553333 34678899999999999999999888776533 35999999999999888888765
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc--CCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 211 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~--~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
....|+++.-+.|....+.. -...++|+|+||.+...+.++ ..--+.++..+|+||.|.+. .+.++-++.+...
T Consensus 997 ~~~~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr 1072 (1230)
T KOG0952|consen 997 DELPGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSR 1072 (1230)
T ss_pred cccCCceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeeccccccc-CCCcceEEEEeec
Confidence 54458999999998766522 123589999999999887763 23347889999999999774 4434444444333
Q ss_pred ccc-----cCCceEEeecCCCChHHHHHHHHhcccCC----cEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHh
Q 007044 289 VED-----ANKVQTLLFSATLPSWVKHISTKFLKSDK----KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359 (620)
Q Consensus 289 ~~~-----~~~~q~ll~SATl~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~ 359 (620)
.+. ...++.+.+|- .+.....++......+. ..+.-+........... +.+.+ .-.....-....++.
T Consensus 1073 ~n~~s~~t~~~vr~~glst-a~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~-~~~cp-rm~smnkpa~qaik~ 1149 (1230)
T KOG0952|consen 1073 MNYISSQTEEPVRYLGLST-ALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPG-QHYCP-RMMSMNKPAFQAIKT 1149 (1230)
T ss_pred cccCccccCcchhhhhHhh-hhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCc-hhcch-hhhhcccHHHHHHhc
Confidence 221 11345555442 23333344433321111 00000000000000001 11111 111222334455667
Q ss_pred cCCCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCc
Q 007044 360 YSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKF 410 (620)
Q Consensus 360 ~~~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~ 410 (620)
+++..++|||+.+++....-+.-|. ....++.+ ..+-+.++...++...
T Consensus 1150 ~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1150 HSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNL 1206 (1230)
T ss_pred CCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccch
Confidence 7788999999998876544333222 22334433 3444555555555443
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.39 E-value=2.5e-06 Score=97.05 Aligned_cols=69 Identities=22% Similarity=0.182 Sum_probs=53.3
Q ss_pred CceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccC-----CC--cc--EEE-EEeCCC-chHHHHHHHHh
Q 007044 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-----GN--TG--VAV-MLYDPR-KSSVSKIERES 477 (620)
Q Consensus 409 ~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~-----g~--~G--~~i-~l~~~~-~~~~~~i~~~~ 477 (620)
..+.+++-.++..|.|.|+|-.+....-..|...-.|-+||.-|. |. .+ ..+ ++++.. ..+...+++++
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 689999999999999999999998898888999999999999885 22 11 223 344555 66676666655
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.32 E-value=1.7e-06 Score=84.92 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
++.+-|.+|+..++.... .+++||+|||||.+..- ++..+..... ......+.++|+++||..-+.++.+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~----~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK----SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh----hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 99999999999965433 3333311000 00012445699999999999999888876
No 177
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.22 E-value=2.5e-05 Score=84.40 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=81.9
Q ss_pred CeEEEEEcccccHHHHHHhcc----------------------cchhhccccchHHHHHHHHHhhc--CC-ceEEEeccc
Q 007044 364 GRTIIFTETKESASQLADLLP----------------------GARALHGDIQQSQREVTLAGFRS--GK-FMTLVATNV 418 (620)
Q Consensus 364 ~~~iVF~~t~~~~~~l~~~l~----------------------~~~~lh~~l~~~~R~~~~~~F~~--g~-~~vLvaTdv 418 (620)
.++|||..+....+-+.+.|. ....+.|-.+...|++.+++|.+ |- .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 478999999888888877775 12246788889999999999986 32 357888999
Q ss_pred ccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEE
Q 007044 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461 (620)
Q Consensus 419 ~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~ 461 (620)
..-||++=..+-+|.||.-|++.--.|.+-|.-|.|+..-|++
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpcfv 842 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFV 842 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeE
Confidence 9999999999999999999999999999999999999776644
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.21 E-value=9.9e-06 Score=77.38 Aligned_cols=122 Identities=22% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~--dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
++++-|.+++..++.+. -++++|+.|||||.+. -.+...+... +.++++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~------------g~~v~~~apT~~Aa~~L~~~~- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA------------GKRVIGLAPTNKAAKELREKT- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT------------T--EEEEESSHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC------------CCeEEEECCcHHHHHHHHHhh-
Confidence 47889999999997544 4778899999999864 3344444432 235999999998888766652
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC----ccCCCccEEEeccchhhhhcCcHHHHHH
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~----~~l~~l~~lVlDEah~~l~~~f~~~l~~ 284 (620)
++.+ .|-.+++....... ..+...++||||||-.+. ...+..
T Consensus 67 ------~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ 112 (196)
T PF13604_consen 67 ------GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLAR 112 (196)
T ss_dssp ------TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHH
T ss_pred ------Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHH
Confidence 1222 22222222111111 115566799999999764 456777
Q ss_pred HHHhccccCCceEEeec
Q 007044 285 ILGKVEDANKVQTLLFS 301 (620)
Q Consensus 285 il~~~~~~~~~q~ll~S 301 (620)
++..++.. ..+++++-
T Consensus 113 ll~~~~~~-~~klilvG 128 (196)
T PF13604_consen 113 LLRLAKKS-GAKLILVG 128 (196)
T ss_dssp HHHHS-T--T-EEEEEE
T ss_pred HHHHHHhc-CCEEEEEC
Confidence 77777652 34555543
No 179
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.15 E-value=8.1e-06 Score=89.96 Aligned_cols=142 Identities=24% Similarity=0.318 Sum_probs=91.4
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHH---HHHhCCCCCC----cc--------c-------C-
Q 007044 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPIL---ESLTNGPTKA----SK--------K-------T- 182 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil---~~l~~~~~~~----~~--------~-------~- 182 (620)
.+|+|.|...+..++ ...+.++-+|||||||++.+-..+ +++....... .+ . .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 478999998776655 568899999999999987554443 3333110000 00 0 0
Q ss_pred ------CCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeC---------------------------------
Q 007044 183 ------GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------------------------------- 223 (620)
Q Consensus 183 ------~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g--------------------------------- 223 (620)
.....|++.|-+-|-.-..|+.+++++.+-. ++...+-.
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 0123678888888888889999999876432 22111111
Q ss_pred --------------------------------CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC--ccCCCccEEEecc
Q 007044 224 --------------------------------GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDE 269 (620)
Q Consensus 224 --------------------------------g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~--~~l~~l~~lVlDE 269 (620)
+-+|-. .+.+...+|||+|-+..|+|-.-|+. ++|.+ .+|||||
T Consensus 178 f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfa-SR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDE 255 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFA-SRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDE 255 (945)
T ss_pred ccccccccccccccCCCcccHHHHHHhCccCcCCcchh-hhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEec
Confidence 001110 04555679999999999999877765 55555 6899999
Q ss_pred chhhhh
Q 007044 270 ADEMLR 275 (620)
Q Consensus 270 ah~~l~ 275 (620)
||.|.+
T Consensus 256 AHNiEd 261 (945)
T KOG1132|consen 256 AHNIED 261 (945)
T ss_pred cccHHH
Confidence 999853
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.15 E-value=3.3e-05 Score=82.49 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=64.8
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
...|+.++..-|..|+.++|+..=-|++||+|+|||.+-.-.+++.+.... ..+|+.+|+.--+.|++
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~------------~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHA------------GPVLVCAPSNIAVDQLA 471 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcC------------CceEEEcccchhHHHHH
Confidence 335777888999999999999999999999999999887666665555432 23999999999999999
Q ss_pred HHHHHhhcCCCceEEEEe
Q 007044 205 EDFDVYGGAVGLTSCCLY 222 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~ 222 (620)
+.+.+. |++|+-+.
T Consensus 472 eKIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 472 EKIHKT----GLKVVRLC 485 (935)
T ss_pred HHHHhc----CceEeeee
Confidence 888653 45655553
No 181
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.14 E-value=7.5e-05 Score=82.25 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccC--CCccEE-----------EEEeCCC-chHHHHH
Q 007044 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA--GNTGVA-----------VMLYDPR-KSSVSKI 473 (620)
Q Consensus 408 g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~--g~~G~~-----------i~l~~~~-~~~~~~i 473 (620)
...+.+++-.++-.|.|=|+|=.++-.....|..+=.|.+||.-|. ...|.- .++++.. ..++..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999995 233432 3455555 6777777
Q ss_pred HHHhC
Q 007044 474 ERESG 478 (620)
Q Consensus 474 ~~~~~ 478 (620)
.+++.
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 76643
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.10 E-value=5.5e-06 Score=78.66 Aligned_cols=144 Identities=19% Similarity=0.288 Sum_probs=73.4
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH----
Q 007044 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH---- 204 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~---- 204 (620)
+...++-|..++..++...-+++.||.|||||+.++..+++.+..+. .-+++|+-|+.+....+-
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----------~~kiii~Rp~v~~~~~lGflpG 70 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-----------YDKIIITRPPVEAGEDLGFLPG 70 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------SEEEEEE-S--TT----SS--
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-----------CcEEEEEecCCCCccccccCCC
Confidence 34568899999999998888999999999999999888888887743 235888888765422110
Q ss_pred HHHHHhhcCCC-c--eEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHH
Q 007044 205 EDFDVYGGAVG-L--TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (620)
Q Consensus 205 ~~~~~~~~~~~-~--~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~ 281 (620)
+.-.++..... + ....+.+.. ....+.....|-+.++..+ || ..+++ .+||+|||..+. ..+
T Consensus 71 ~~~eK~~p~~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~i-----RG-rt~~~-~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 71 DLEEKMEPYLRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFI-----RG-RTFDN-AFIIVDEAQNLT----PEE 135 (205)
T ss_dssp -------TTTHHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGG-----TT---B-S-EEEEE-SGGG------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhh-----cC-ccccc-eEEEEecccCCC----HHH
Confidence 00000000000 0 000000111 1112222345555554433 11 12333 799999999775 677
Q ss_pred HHHHHHhccccCCceEEee
Q 007044 282 VELILGKVEDANKVQTLLF 300 (620)
Q Consensus 282 l~~il~~~~~~~~~q~ll~ 300 (620)
+..++.++.. +.+++++
T Consensus 136 ~k~ilTR~g~--~skii~~ 152 (205)
T PF02562_consen 136 LKMILTRIGE--GSKIIIT 152 (205)
T ss_dssp HHHHHTTB-T--T-EEEEE
T ss_pred HHHHHcccCC--CcEEEEe
Confidence 8889988876 5566654
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.03 E-value=8e-05 Score=74.01 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=115.7
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----------cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL----------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTK 177 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il----------~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~ 177 (620)
|...-.+.|+..++. .| .++..|.+++-.+. .+.-+++-..||.||--..+--|++...+++.
T Consensus 20 P~~~y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~- 92 (303)
T PF13872_consen 20 PDPTYRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK- 92 (303)
T ss_pred CCCCcccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-
Confidence 344445567766554 33 46888988886653 23568888999999998888888888877643
Q ss_pred CcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC--
Q 007044 178 ASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-- 255 (620)
Q Consensus 178 ~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-- 255 (620)
++|.++.+-.|-....+.++.++.. .+.+..+..- .+. ....-.-.|+++|+..|...-..+
T Consensus 93 -----------r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~ 156 (303)
T PF13872_consen 93 -----------RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISESQSGGK 156 (303)
T ss_pred -----------ceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhHHhccCC
Confidence 4899999999999999999988754 3444433321 000 001123569999999887764321
Q ss_pred -Ccc-------C--CCccEEEeccchhhhhcCc--------HHHHHHHHHhccccCCceEEeecCCCChHHHH
Q 007044 256 -NID-------L--SSLKFRVLDEADEMLRMGF--------VEDVELILGKVEDANKVQTLLFSATLPSWVKH 310 (620)
Q Consensus 256 -~~~-------l--~~l~~lVlDEah~~l~~~f--------~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~ 310 (620)
... + ..=.+|||||||.+-+..- ...+..+-..+|. .+++.+|||-.....+
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~---ARvvY~SATgasep~N 226 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN---ARVVYASATGASEPRN 226 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC---CcEEEecccccCCCce
Confidence 111 1 1124899999999876542 1344455566664 5799999997654433
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.00 E-value=2.3e-05 Score=72.85 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=77.2
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHhcccc------hhhccccchHHHHHHHHHhhcCCceEEEecc--cccccCCCC
Q 007044 355 DIIRCYSSGGRTIIFTETKESASQLADLLPGA------RALHGDIQQSQREVTLAGFRSGKFMTLVATN--VAARGLDIN 426 (620)
Q Consensus 355 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~------~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd--v~~rGlDi~ 426 (620)
.++... ++.+|||++|....+.+...+... ..+.. ....+..+++.|+.+.-.||+|+. .++.|||++
T Consensus 3 ~l~~~~--~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 3 ELISAV--PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHCC--SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred HHHhcC--CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 344443 489999999999999999988732 22332 366788999999999999999998 999999999
Q ss_pred C--ccEEEEcCCCCC----H--------------------------HHHHHHhcccccCCCccEEEEEeCCC
Q 007044 427 D--VQLIIQCEPPRD----V--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 427 ~--v~~VI~~d~P~s----~--------------------------~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+ ++.||..++|.. + ....|.+||.-|....--++.+++++
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 6 778999888841 1 12247889999998776677888887
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.94 E-value=5.3e-05 Score=80.65 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHHcCCc-EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
..+.+-|..|+....+.++ .+++||+|||||.+...-|.+.+..+. ++||.+||.+-+..+.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k-------------~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK-------------RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC-------------eEEEEcCchHHHHHHHHHh
Confidence 3567889999999888755 789999999999988777777776653 4999999999888887753
No 186
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.87 E-value=8.7e-05 Score=82.78 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=87.7
Q ss_pred CeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCC-ceE-EEecccccccCCCCCccEEEEcCCC
Q 007044 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK-FMT-LVATNVAARGLDINDVQLIIQCEPP 437 (620)
Q Consensus 364 ~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~-~~v-LvaTdv~~rGlDi~~v~~VI~~d~P 437 (620)
.++|||++-...+.-+...+. ....+.|.|+...|.+.+..|..+. .+| +++.-+..-|+++-...||+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999998888777776665 4556789999999999999998543 344 4566788899999999999999999
Q ss_pred CCHHHHHHHhcccccCCCccEEE--EEeCCC--chHHHHHHHH
Q 007044 438 RDVEAYIHRSGRTGRAGNTGVAV--MLYDPR--KSSVSKIERE 476 (620)
Q Consensus 438 ~s~~~yiqr~GRtgR~g~~G~~i--~l~~~~--~~~~~~i~~~ 476 (620)
+++..--|.+-|+.|.|+.-.+. .|.-.+ +.++..|.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~ 662 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEK 662 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHH
Confidence 99999999999999999865442 233333 4445555443
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.86 E-value=7.2e-05 Score=78.44 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=68.1
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcch
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~ 227 (620)
-++|.|..|||||+..+--+ ..+... ..+..++++++...|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~-~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLA-KELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHH-HHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhccc--------------
Confidence 47899999999998654333 333111 12335899999999999888887543200
Q ss_pred HHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC-------cHHHHHHHHHh
Q 007044 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-------FVEDVELILGK 288 (620)
Q Consensus 228 ~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~-------f~~~l~~il~~ 288 (620)
......+..+..+...+.........+++||+||||+|...+ ....+..++..
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 012233444555544333223446788999999999998732 24566666665
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.85 E-value=0.00014 Score=81.64 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
..+.+.|..|+..++.. ..++++||+|||||.+..-.+.+.+..+ .++|+++||..-+.++.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g-------------~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG-------------LRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CCEEEEcCcHHHHHHHHHHHH
Confidence 35689999999998876 6788999999999976655555544432 259999999999999988876
Q ss_pred H
Q 007044 209 V 209 (620)
Q Consensus 209 ~ 209 (620)
.
T Consensus 223 ~ 223 (637)
T TIGR00376 223 L 223 (637)
T ss_pred h
Confidence 5
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.81 E-value=0.00024 Score=69.43 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHH----
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ---- 202 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q---- 202 (620)
.++...+..|...+..+.++.-+++.|++|||||+......++.+..+. .-+++|.=|+.+....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----------~~kIiI~RP~v~~ge~LGfL 123 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-----------VDRIIVTRPVLQADEDLGFL 123 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----------eeEEEEeCCCCCchhhhCcC
Confidence 4667778899999999998888999999999999987777776664432 1236666666543221
Q ss_pred ---HHHHHHHhhcCCCceEEEEeCCcchHHHHHHh--cCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC
Q 007044 203 ---VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL--KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (620)
Q Consensus 203 ---v~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l--~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~ 277 (620)
+.+.+.-|....--....+.|.. ....+ ...-.|-|.....+ +-.. |.+ .+||+|||+.+.
T Consensus 124 PG~~~eK~~p~~~pi~D~L~~~~~~~----~~~~~~~~~~~~Iei~~l~ym----RGrt--l~~-~~vIvDEaqn~~--- 189 (262)
T PRK10536 124 PGDIAEKFAPYFRPVYDVLVRRLGAS----FMQYCLRPEIGKVEIAPFAYM----RGRT--FEN-AVVILDEAQNVT--- 189 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhChH----HHHHHHHhccCcEEEecHHHh----cCCc--ccC-CEEEEechhcCC---
Confidence 11111111100000000001111 11111 11234555544333 2222 333 789999999764
Q ss_pred cHHHHHHHHHhccccCCceEEe
Q 007044 278 FVEDVELILGKVEDANKVQTLL 299 (620)
Q Consensus 278 f~~~l~~il~~~~~~~~~q~ll 299 (620)
...+..++..+.. +.++++
T Consensus 190 -~~~~k~~ltR~g~--~sk~v~ 208 (262)
T PRK10536 190 -AAQMKMFLTRLGE--NVTVIV 208 (262)
T ss_pred -HHHHHHHHhhcCC--CCEEEE
Confidence 3778888888876 455554
No 190
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.73 E-value=9.4e-05 Score=72.35 Aligned_cols=88 Identities=27% Similarity=0.361 Sum_probs=67.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCc-chHHHHHHhc-CCCcEEEeChHHHHHHHhcCCccCCC
Q 007044 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA-PYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSS 261 (620)
Q Consensus 184 ~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~-~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~ 261 (620)
....|.+||||..--=|..+.+.++.+.. .+..|+-++.-. ....|...+. ..++|.||||+||..+++.+.+.+++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 35678999999987667777777766531 123444444443 6667777776 47899999999999999999999999
Q ss_pred ccEEEeccchh
Q 007044 262 LKFRVLDEADE 272 (620)
Q Consensus 262 l~~lVlDEah~ 272 (620)
+.+||||--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999997653
No 191
>PF13245 AAA_19: Part of AAA domain
Probab=97.69 E-value=0.00014 Score=57.67 Aligned_cols=60 Identities=30% Similarity=0.370 Sum_probs=40.3
Q ss_pred HHHHHHc-CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 139 TFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 139 ~i~~il~-g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
++...+. +.-+++.||.|||||...+--+...+..... . +.++|+++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--------~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD--------P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--------C-CCeEEEECCCHHHHHHHHHHH
Confidence 3443333 4446669999999997655555555532110 1 335999999999999998877
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.68 E-value=0.00045 Score=76.89 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=84.2
Q ss_pred CcHHHHHHHHHHHcCCcEEEECCCCChhhHHhH--HHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV--LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 132 ~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~--lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..++|+.|+-..+.++-+++.|++|||||.+.. +-.+..+.. ....++++++||.--|..+.+.+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-----------~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD-----------GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-----------CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 358999999999999999999999999997642 222222211 1234689999999999988887754
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc------CCccCCCccEEEeccchhhhhcCcHHHHH
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~------~~~~l~~l~~lVlDEah~~l~~~f~~~l~ 283 (620)
.....++. .. .......-..|-.+|+..... ...+.-.+++||+|||-.+ + ...+.
T Consensus 222 ~~~~~~~~-----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~ 283 (615)
T PRK10875 222 ALRQLPLT-----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMA 283 (615)
T ss_pred hhhccccc-----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHH
Confidence 33222110 00 000011123343444332111 1112334689999999854 3 45667
Q ss_pred HHHHhccccCCceEEeec
Q 007044 284 LILGKVEDANKVQTLLFS 301 (620)
Q Consensus 284 ~il~~~~~~~~~q~ll~S 301 (620)
.++..++. ..++|++-
T Consensus 284 ~ll~al~~--~~rlIlvG 299 (615)
T PRK10875 284 RLIDALPP--HARVIFLG 299 (615)
T ss_pred HHHHhccc--CCEEEEec
Confidence 78888876 55666653
No 193
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.68 E-value=0.00041 Score=66.54 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=92.5
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~---g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
|+...-+.+++=.+.. + .-.+|.|.+....+.+ |.+.+.+.-+|.|||.+ ++|++..+..+...
T Consensus 5 w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~---------- 71 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR---------- 71 (229)
T ss_pred CCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----------
Confidence 4444445555544332 2 3689999999988874 68999999999999976 56777666654321
Q ss_pred CeEEEEcccHHHHHHHHHHHHH-hhcCCCceEEE--EeCCcchHH----HHH----HhcCCCcEEEeChHHHHHHHhc--
Q 007044 188 PSVLVLLPTRELAKQVHEDFDV-YGGAVGLTSCC--LYGGAPYHA----QEF----KLKKGIDVVIGTPGRIKDHIER-- 254 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~-~~~~~~~~v~~--~~gg~~~~~----~~~----~l~~~~~IlV~Tp~rl~~~l~~-- 254 (620)
-+-+++|. .|..|....+.. ++.-.+-.+.. +.-..+.+. ... .....-.|+++||+.++.+...
T Consensus 72 -LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 72 -LVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred -EEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 36677776 799999988864 44333333332 223332211 111 2234567999999998765321
Q ss_pred -----CCc-----------cCCCccEEEeccchhhhh
Q 007044 255 -----GNI-----------DLSSLKFRVLDEADEMLR 275 (620)
Q Consensus 255 -----~~~-----------~l~~l~~lVlDEah~~l~ 275 (620)
+.. .+.....=|+||+|..+.
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 111 123334458999998873
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.61 E-value=0.0008 Score=74.74 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHcCCcEEEECCCCChhhHHh--HHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAF--VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 133 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~--~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++|+.++..++.++-+++.|+.|||||.+. ++-++...... ...+++++.+||---|..+.+.+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~----------~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPK----------QGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccc----------cCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 3799999999999999999999999999753 22223222211 01246999999998888877766543
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHh------cCCccCCCccEEEeccchhhhhcCcHHHHHH
Q 007044 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE------RGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (620)
Q Consensus 211 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~------~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 284 (620)
....+.. .. ......+-..|-.+++.... ...-+.-.+++||||||-.+ + ...+..
T Consensus 217 ~~~l~~~----------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ 278 (586)
T TIGR01447 217 VKNLAAA----------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAK 278 (586)
T ss_pred hcccccc----------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHH
Confidence 2221110 00 00011122344444433211 01112335789999999854 3 456777
Q ss_pred HHHhccccCCceEEeec
Q 007044 285 ILGKVEDANKVQTLLFS 301 (620)
Q Consensus 285 il~~~~~~~~~q~ll~S 301 (620)
++..++. ..++|++-
T Consensus 279 ll~al~~--~~rlIlvG 293 (586)
T TIGR01447 279 LLKALPP--NTKLILLG 293 (586)
T ss_pred HHHhcCC--CCEEEEEC
Confidence 8888876 55666653
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.52 E-value=0.00098 Score=76.17 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=76.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+++-|.+|+..+..++-+++.|+.|||||.+. -.++..+.... ....+++++||-.-|.++.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----------~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----------GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----------CCceEEEEeCchHHHHHHHHhc--
Confidence 4799999999999999899999999999999753 23333333211 0124888999988887654432
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
+... ..+... +.... +..... ..-.....++||+|||+.+. ...+..++..+
T Consensus 389 -----g~~a------~Tih~l---L~~~~-------~~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 -----GLTA------STIHRL---LGYGP-------DTFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred -----CCcc------ccHHHH---hhccC-------Cccchh---hhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 1111 011111 00000 000000 00112356899999999663 34567777777
Q ss_pred cccCCceEEeec
Q 007044 290 EDANKVQTLLFS 301 (620)
Q Consensus 290 ~~~~~~q~ll~S 301 (620)
+. ..+++++-
T Consensus 441 ~~--~~rlilvG 450 (720)
T TIGR01448 441 PD--HARLLLVG 450 (720)
T ss_pred CC--CCEEEEEC
Confidence 65 56777653
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.28 E-value=0.0036 Score=73.03 Aligned_cols=127 Identities=24% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCc-EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
.|+ .+++-|.+++..++.+++ +++.|..|||||.+ +-.+...+.. .+.+++.++||--.|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~------------~G~~V~~~ApTGkAA~~L~e 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA------------AGYEVRGAALSGIAAENLEG 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH------------cCCeEEEecCcHHHHHHHhh
Confidence 454 799999999999998655 78999999999986 3344444432 23458999999766655432
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHH
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~i 285 (620)
..|+.. .|-.+|..-..++...+...++||||||-.+. ..++..+
T Consensus 409 -------~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~L 453 (988)
T PRK13889 409 -------GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERV 453 (988)
T ss_pred -------ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHH
Confidence 122211 11122211112233346677899999999553 3455666
Q ss_pred HHhccccCCceEEeecCC
Q 007044 286 LGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 286 l~~~~~~~~~q~ll~SAT 303 (620)
+...... ..++||+-=+
T Consensus 454 L~~a~~~-garvVLVGD~ 470 (988)
T PRK13889 454 LSHAADA-GAKVVLVGDP 470 (988)
T ss_pred HHhhhhC-CCEEEEECCH
Confidence 6654322 4566665433
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.18 E-value=0.0063 Score=69.95 Aligned_cols=123 Identities=20% Similarity=0.164 Sum_probs=73.9
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
..+++-|..++..++.+ +-+++.|+.|+|||...- .+.+.+.. .+.++++++||--.|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~------------~g~~V~~~ApTg~Aa~~L~~~-- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA------------AGYRVIGAALSGKAAEGLQAE-- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh------------CCCeEEEEeCcHHHHHHHHhc--
Confidence 36899999999998874 668999999999997533 33333332 123589999997766655432
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
.++... |-.++...+.++...+...++||||||-.+. ...+..++..
T Consensus 416 -----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~ 462 (744)
T TIGR02768 416 -----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKE 462 (744)
T ss_pred -----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHH
Confidence 222211 1112211122233345678999999998653 2334555554
Q ss_pred ccccCCceEEeec
Q 007044 289 VEDANKVQTLLFS 301 (620)
Q Consensus 289 ~~~~~~~q~ll~S 301 (620)
.... ..++||+-
T Consensus 463 ~~~~-~~kliLVG 474 (744)
T TIGR02768 463 AEEA-GAKVVLVG 474 (744)
T ss_pred HHhc-CCEEEEEC
Confidence 3321 34555554
No 198
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0017 Score=69.23 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=80.0
Q ss_pred ECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH-hhcCCCceEEEEeCCcchHHH
Q 007044 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHAQ 230 (620)
Q Consensus 152 ~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~-~~~~~~~~v~~~~gg~~~~~~ 230 (620)
...||||||++++-.|++....+-. ..|+.|..-.........|.. .....-++-...+++..+.-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr------------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ik 70 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYR------------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIK 70 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchh------------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeee
Confidence 4689999999998888887776543 267777665544443333211 100000111112222211100
Q ss_pred ----HHHhcCCCcEEEeChHHHHHHHhcC---Ccc---CCCccE-EEeccchhhhhcC---------cHHHHHH-HHHhc
Q 007044 231 ----EFKLKKGIDVVIGTPGRIKDHIERG---NID---LSSLKF-RVLDEADEMLRMG---------FVEDVEL-ILGKV 289 (620)
Q Consensus 231 ----~~~l~~~~~IlV~Tp~rl~~~l~~~---~~~---l~~l~~-lVlDEah~~l~~~---------f~~~l~~-il~~~ 289 (620)
...-..+..|+++|-+.|...+.+. .+. +.+..+ ++-||||++-... -...++. ++-.+
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 0112346889999999997776442 222 344443 4679999984211 1111222 22223
Q ss_pred cccCCceEEeecCCCChHHHHHHHHhc
Q 007044 290 EDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 290 ~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
...+.--++.||||+|. -..+..+|-
T Consensus 151 ~~nkd~~~lef~at~~k-~k~v~~ky~ 176 (812)
T COG3421 151 EQNKDNLLLEFSATIPK-EKSVEDKYE 176 (812)
T ss_pred hcCCCceeehhhhcCCc-cccHHHHhc
Confidence 32223456679999994 445555563
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.15 E-value=0.0012 Score=58.42 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=13.8
Q ss_pred cCCcEEEECCCCChhhHHhHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lp 166 (620)
+++-+++.|++|+|||......
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHH
Confidence 3466899999999999864433
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.12 E-value=0.0014 Score=67.33 Aligned_cols=123 Identities=21% Similarity=0.123 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 132 ~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
+++-|.+++.. ....++|.|..|||||.+.+.-++..+..... ...++|++++|+..|..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---------~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV---------PPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---------TGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC---------ChHHheecccCHHHHHHHHHHHHHhc
Confidence 57889999988 67889999999999999888777777766532 23359999999999999998887654
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCC--CccEEEeccch
Q 007044 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS--SLKFRVLDEAD 271 (620)
Q Consensus 212 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~--~l~~lVlDEah 271 (620)
....... ...............+.|+|-..+...+-+...... .-.+-++|+..
T Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 70 EEEQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHCCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred Ccccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 3211100 000011112223466889998877665433221111 12456777766
No 201
>PRK04296 thymidine kinase; Provisional
Probab=97.08 E-value=0.002 Score=61.21 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=57.9
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEccc---HHHHHHHHHHHHHhhcCCCceEEEEeC
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT---RELAKQVHEDFDVYGGAVGLTSCCLYG 223 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt---reLa~Qv~~~~~~~~~~~~~~v~~~~g 223 (620)
.=.++.|++|+|||.+.+-.+......+ .+++|+-|. |....++ ....++...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g-------------~~v~i~k~~~d~~~~~~~i-------~~~lg~~~~---- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG-------------MKVLVFKPAIDDRYGEGKV-------VSRIGLSRE---- 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC-------------CeEEEEeccccccccCCcE-------ecCCCCccc----
Confidence 3468899999999976554444333332 247888663 3221111 111122111
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
.+.+..+..+++.+.. .-.++++||+||+|.+- .+++..++..+.. .-..+++++-
T Consensus 59 ---------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~--~g~~vi~tgl 114 (190)
T PRK04296 59 ---------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDD--LGIPVICYGL 114 (190)
T ss_pred ---------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHH--cCCeEEEEec
Confidence 0223455566666544 23467899999998652 2335556655433 2244555544
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.84 E-value=0.017 Score=51.33 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHH
Q 007044 146 GSDLVGRARTGQGKTLA 162 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla 162 (620)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.78 E-value=0.024 Score=66.82 Aligned_cols=139 Identities=18% Similarity=0.153 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 007044 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (620)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~-g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (620)
++++..+......+ ..+++-|.+++..+.. ++-++++|+.|||||.+.- ++...+.. .+.+++.+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~------------~G~~V~g~ 431 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA------------AGYRVVGG 431 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH------------cCCeEEEE
Confidence 44555555444444 4799999999998864 4668999999999997543 34443332 23358999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
+||---|..+.+. .|+...++ .+++.....+...+..-.+||||||-.+
T Consensus 432 ApTgkAA~~L~e~-------~Gi~a~TI------------------------as~ll~~~~~~~~l~~~~vlVIDEAsMv 480 (1102)
T PRK13826 432 ALAGKAAEGLEKE-------AGIQSRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGMV 480 (1102)
T ss_pred cCcHHHHHHHHHh-------hCCCeeeH------------------------HHHHhhhccCccCCCCCcEEEEECcccC
Confidence 9997666655332 23332221 1111111112234566779999999955
Q ss_pred hhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 274 LRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
. ..++..++..++.. ..+++++-=+
T Consensus 481 ~----~~~m~~Ll~~~~~~-garvVLVGD~ 505 (1102)
T PRK13826 481 A----SRQMALFVEAVTRA-GAKLVLVGDP 505 (1102)
T ss_pred C----HHHHHHHHHHHHhc-CCEEEEECCH
Confidence 3 45566667666532 4566665443
No 204
>PRK08181 transposase; Validated
Probab=96.69 E-value=0.021 Score=57.08 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHcCCcEEEECCCCChhhHHhHH
Q 007044 143 VLDGSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~~l 165 (620)
+-.+++++++||+|+|||.....
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHH
Confidence 44788999999999999965443
No 205
>PRK06526 transposase; Provisional
Probab=96.69 E-value=0.0089 Score=59.37 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=22.4
Q ss_pred HHHcCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 142 ~il~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.+..+.+++++||+|+|||........+.+.
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3446789999999999999765544444443
No 206
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.044 Score=57.11 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=67.3
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE-Ec-ccH-HHHHHHHHHHHHhhcCCCceEEEEeC
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV-LL-PTR-ELAKQVHEDFDVYGGAVGLTSCCLYG 223 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li-l~-Ptr-eLa~Qv~~~~~~~~~~~~~~v~~~~g 223 (620)
+.+.+.||||+|||.....-+......+ .++.+ -+ |-| ..+.|+ ..++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G-------------kkVglI~aDt~RiaAvEQL----k~yae~lgipv----- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK-------------KTVGFITTDHSRIGTVQQL----QDYVKTIGFEV----- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC-------------CcEEEEecCCcchHHHHHH----HHHhhhcCCcE-----
Confidence 5688999999999986555444332222 12443 33 333 223333 33332222222
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc-CcHHHHHHHHHhccccCCceEEeecC
Q 007044 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
+++.+|..+.+.+..-. .-.++++|++|-+=+.... .....+..++..... ..-.+.+||
T Consensus 300 ----------------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P--devlLVLsA 360 (436)
T PRK11889 300 ----------------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLSA 360 (436)
T ss_pred ----------------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC--CeEEEEECC
Confidence 22446777766664311 1124688999988764322 123334444443322 233566899
Q ss_pred CCCh-HHHHHHHHhc
Q 007044 303 TLPS-WVKHISTKFL 316 (620)
Q Consensus 303 Tl~~-~~~~~~~~~~ 316 (620)
|... ....+++.|-
T Consensus 361 Ttk~~d~~~i~~~F~ 375 (436)
T PRK11889 361 SMKSKDMIEIITNFK 375 (436)
T ss_pred ccChHHHHHHHHHhc
Confidence 7654 5567777765
No 207
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.66 E-value=0.0076 Score=67.87 Aligned_cols=125 Identities=20% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCCCcHHHHHHHHHHHcCCc-EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
+..+..-|++|+-.++..+| .++.|=+|||||......+--.+..+ .++|+.+-|-.-+..+--.+
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g-------------kkVLLtsyThsAVDNILiKL 733 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALG-------------KKVLLTSYTHSAVDNILIKL 733 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcC-------------CeEEEEehhhHHHHHHHHHH
Confidence 34678889999999887766 77889999999987554443333332 24899999977776665555
Q ss_pred HHhhcCCCceEEEEeCCcchHHH-----------------HHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccc
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQ-----------------EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~-----------------~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEa 270 (620)
..+. +.+.-+-.+.....+ .......+.||.||=-.+-+.| +..+.++|.|+|||
T Consensus 734 ~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEA 805 (1100)
T KOG1805|consen 734 KGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEA 805 (1100)
T ss_pred hccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccc
Confidence 4432 322222222222221 1233356889998854443332 34566899999999
Q ss_pred hhhh
Q 007044 271 DEML 274 (620)
Q Consensus 271 h~~l 274 (620)
-.++
T Consensus 806 SQI~ 809 (1100)
T KOG1805|consen 806 SQIL 809 (1100)
T ss_pred cccc
Confidence 9875
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=96.64 E-value=0.021 Score=58.86 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCccEEEeccchhhh-hcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 260 ~~l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
.+.++|++|.|.++- +..+...+..+...+.. ...+++++||..+.....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p--d~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP--DLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC--ceEEEeeccccchhHHHHHHHHH
Confidence 346799999999875 34456677777766544 45678889998887766677665
No 209
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.046 Score=57.53 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=70.3
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeE-EEEccc-HHHHHHHHHHHHHhhcCCCceEEEEeC
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV-LVLLPT-RELAKQVHEDFDVYGGAVGLTSCCLYG 223 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~-Lil~Pt-reLa~Qv~~~~~~~~~~~~~~v~~~~g 223 (620)
.+.+++.||||+|||.+..--+......... .+.++ +|-+-| |.-+..+ +..++...++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~---------~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~--- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDD---------KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA--- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc---------CCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe---
Confidence 3568899999999998764333322211100 11123 333333 3433322 45555544454322
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecC
Q 007044 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
+-++..+...+.+ +.+.++|++|++.++.... ....+..++..+.. +.-..+++||
T Consensus 239 ------------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~-~~e~~LVlsa 295 (388)
T PRK12723 239 ------------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-DAEFHLAVSS 295 (388)
T ss_pred ------------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC-CCeEEEEEcC
Confidence 2234555554442 4678899999999874211 22344455554432 1135678999
Q ss_pred CCCh-HHHHHHHHhc
Q 007044 303 TLPS-WVKHISTKFL 316 (620)
Q Consensus 303 Tl~~-~~~~~~~~~~ 316 (620)
|... .+..+...|.
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 9864 3445555553
No 210
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.61 E-value=0.0089 Score=62.93 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=70.6
Q ss_pred CCcHHHHHHHHHH------HcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH-
Q 007044 131 SLFPIQAMTFDMV------LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV- 203 (620)
Q Consensus 131 ~~~~~Q~~~i~~i------l~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv- 203 (620)
++++-|+.++..+ ..+..+.+.|+-|+|||+.+ -.+...... .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~-----------~~~~~~~~a~tg~AA~~i~ 67 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS-----------RGKKVLVTAPTGIAAFNIP 67 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc-----------ccceEEEecchHHHHHhcc
Confidence 3677899998887 57889999999999999843 333333322 223489999997777655
Q ss_pred -HHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHH
Q 007044 204 -HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (620)
Q Consensus 204 -~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l 282 (620)
...+..++. .++.. .. ... +.+.+.. ...-.+..+++||+||+=.+ .......+
T Consensus 68 ~G~T~hs~f~-i~~~~------~~-----------~~~--~~~~~~~----~~~~~l~~~~~lIiDEism~-~~~~l~~i 122 (364)
T PF05970_consen 68 GGRTIHSFFG-IPINN------NE-----------KSQ--CKISKNS----RLRERLRKADVLIIDEISMV-SADMLDAI 122 (364)
T ss_pred CCcchHHhcC-ccccc------cc-----------ccc--ccccccc----hhhhhhhhheeeecccccch-hHHHHHHH
Confidence 222222221 11110 00 000 0111110 11224778899999999855 45555566
Q ss_pred HHHHHhccc
Q 007044 283 ELILGKVED 291 (620)
Q Consensus 283 ~~il~~~~~ 291 (620)
...+..+..
T Consensus 123 ~~~lr~i~~ 131 (364)
T PF05970_consen 123 DRRLRDIRK 131 (364)
T ss_pred HHhhhhhhc
Confidence 666665543
No 211
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.61 E-value=0.14 Score=65.03 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=113.9
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
.+++-|.+++..++.. +-.++.|+.|+|||.+. -.+++.+.. .+.++++++||---|.++.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~------------~G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE------------QGYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh------------cCCeEEEEeCCHHHHHHHHHHhc
Confidence 5889999999998865 56899999999999753 233333332 23359999999887777665432
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
..+ .....+...+..+ .-..|...++ .....+..-++||||||-.+. ..++..++..
T Consensus 496 ~~A-------------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~ 552 (1960)
T TIGR02760 496 RLA-------------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDK 552 (1960)
T ss_pred chh-------------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHH
Confidence 111 0011111111111 1122222332 223345677899999999654 4566777766
Q ss_pred ccccCCceEEeecCC--CCh----HHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhh-hhHHHHHHhcC
Q 007044 289 VEDANKVQTLLFSAT--LPS----WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-QVIPDIIRCYS 361 (620)
Q Consensus 289 ~~~~~~~q~ll~SAT--l~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~l~~ll~~~~ 361 (620)
.... +.++||+-=+ +|. .+..+... .....+.+...... ...+ .+.......+. .+....+....
T Consensus 553 a~~~-garvVlvGD~~QL~sV~aG~~f~~L~~---~gv~t~~l~~i~rq--~~~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 553 AEQH-NSKLILLNDSAQRQGMSAGSAIDLLKE---GGVTTYAWVDTKQQ--KASV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred Hhhc-CCEEEEEcChhhcCccccchHHHHHHH---CCCcEEEeeccccc--Ccce--eeeccCchHHHHHHHHHHHhccc
Confidence 5432 4677776544 222 22222222 22333333322111 1111 11112222222 23344444333
Q ss_pred CCCeEEEEEcccccHHHHHHhcc
Q 007044 362 SGGRTIIFTETKESASQLADLLP 384 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~ 384 (620)
....++|+..+..+.+.|....+
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIR 647 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHH
Confidence 33469999999999888887765
No 212
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.52 E-value=0.009 Score=59.35 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=54.1
Q ss_pred HHHHHhhcCCceEEEecccccccCCCCC--------ccEEEEcCCCCCHHHHHHHhcccccCCC-ccEEEEEeCCC
Q 007044 400 VTLAGFRSGKFMTLVATNVAARGLDIND--------VQLIIQCEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (620)
Q Consensus 400 ~~~~~F~~g~~~vLvaTdv~~rGlDi~~--------v~~VI~~d~P~s~~~yiqr~GRtgR~g~-~G~~i~l~~~~ 466 (620)
...+.|.+|+..|+|.|+.++.||.+.+ -++-|...+||+....+|..||+.|.|+ ..-.|.++...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 4567899999999999999999998874 2456678899999999999999999998 34444444433
No 213
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.017 Score=60.30 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=66.3
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCc
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~ 225 (620)
|..+++.||||+|||....--+...+.... ..++.+++ +...-.--.+.+..++...++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----------~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~----- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-----------ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA----- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------CCeEEEEe-cccccccHHHHHHHHHHHcCCceEe-----
Confidence 578999999999999876554443332211 01233333 3222111223444444444444332
Q ss_pred chHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCC
Q 007044 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
+.+++.+...+. .+.+.++|+||.+-+.-... ..+.+..+...... ...++++|||.
T Consensus 200 ----------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~--~~~lLVLsAts 257 (374)
T PRK14722 200 ----------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP--VQRLLLLNATS 257 (374)
T ss_pred ----------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCC--CeEEEEecCcc
Confidence 334444433333 24556888999886442111 22233333221111 23467889998
Q ss_pred ChH-HHHHHHHhc
Q 007044 305 PSW-VKHISTKFL 316 (620)
Q Consensus 305 ~~~-~~~~~~~~~ 316 (620)
... +....+.|.
T Consensus 258 ~~~~l~evi~~f~ 270 (374)
T PRK14722 258 HGDTLNEVVQAYR 270 (374)
T ss_pred ChHHHHHHHHHHH
Confidence 654 345566664
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.41 E-value=0.036 Score=54.57 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=25.6
Q ss_pred CCCccEEEeccchhhhhcCcHH-HHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVE-DVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~-~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+.++++|||||++......+.. .+..|+..... ....+++.|--
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl 204 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNS 204 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCC
Confidence 4568899999999875333332 34455554322 13456665544
No 215
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.41 E-value=0.045 Score=56.91 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l-~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
++-+.+.||||-|||.+.+=-+.... ..... --+||.+-|=-.+. .++++.++.-.++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-----------kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~----- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-----------KVAIITTDTYRIGA--VEQLKTYADIMGVPLE----- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-----------ceEEEEeccchhhH--HHHHHHHHHHhCCceE-----
Confidence 78899999999999986443333222 12211 12566655532222 3456666655556553
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh-hhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM-LRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~-l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+|-+|.-|...+. .+.++++|.+|=+-+= .|......+..++..... ---.+.+|||
T Consensus 265 ----------------vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~--i~~~Lvlsat 322 (407)
T COG1419 265 ----------------VVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHS--IEVYLVLSAT 322 (407)
T ss_pred ----------------EecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcccc--ceEEEEEecC
Confidence 4445555555443 2555566777755431 122234555666665533 2345678998
Q ss_pred CCh-HHHHHHHHhcc
Q 007044 304 LPS-WVKHISTKFLK 317 (620)
Q Consensus 304 l~~-~~~~~~~~~~~ 317 (620)
.-. .+..+...|-.
T Consensus 323 ~K~~dlkei~~~f~~ 337 (407)
T COG1419 323 TKYEDLKEIIKQFSL 337 (407)
T ss_pred cchHHHHHHHHHhcc
Confidence 754 45666666653
No 216
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.39 E-value=0.015 Score=58.99 Aligned_cols=143 Identities=21% Similarity=0.297 Sum_probs=83.0
Q ss_pred CCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
.|+....-.|.-|+..++.- .=|.+.|+-|||||+.++...++.....+ ..-+++|.=|+..+...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~----------~y~KiiVtRp~vpvG~dI- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK----------RYRKIIVTRPTVPVGEDI- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh----------hhceEEEecCCcCccccc-
Confidence 47777778899999998854 33778899999999887777766655432 222477777775544322
Q ss_pred HHHHHhhcCCCceEEEEeCCcc--hHHHHHHhcCCC----cEEEeChHHHHHHHhcCCccCCCc----------cEEEec
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAP--YHAQEFKLKKGI----DVVIGTPGRIKDHIERGNIDLSSL----------KFRVLD 268 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~--~~~~~~~l~~~~----~IlV~Tp~rl~~~l~~~~~~l~~l----------~~lVlD 268 (620)
+.+-|... ...|...+..+- ..-=++.+.+...+.++.+.+..+ .|+|+|
T Consensus 293 --------------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 293 --------------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred --------------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 11111110 011111111111 111122445555555554433222 589999
Q ss_pred cchhhhhcCcHHHHHHHHHhccccCCceEEee
Q 007044 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLF 300 (620)
Q Consensus 269 Eah~~l~~~f~~~l~~il~~~~~~~~~q~ll~ 300 (620)
||..+- ...+..|+..+.. ..+++++
T Consensus 359 EaQNLT----pheikTiltR~G~--GsKIVl~ 384 (436)
T COG1875 359 EAQNLT----PHELKTILTRAGE--GSKIVLT 384 (436)
T ss_pred hhhccC----HHHHHHHHHhccC--CCEEEEc
Confidence 999875 5678999998876 4455553
No 217
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.36 E-value=0.013 Score=67.74 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=91.8
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCC-----cccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEE
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKA-----SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~-----~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~ 220 (620)
|++++..-..|+|||.+-+.-.+..+....... ..+.......-.|||||. .+..||.+++....... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 578899999999999986655554322111000 000001112237999998 88899999998876543 56655
Q ss_pred EeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC--------------ccCC----Ccc--EEEeccchhhhhcCcHH
Q 007044 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--------------IDLS----SLK--FRVLDEADEMLRMGFVE 280 (620)
Q Consensus 221 ~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~--------------~~l~----~l~--~lVlDEah~~l~~~f~~ 280 (620)
+.|=.....-.....-.+|||++|+..|..-+.+.. .++. .+. -|+||||..+ .. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-es-ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ES-SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cc-hHH
Confidence 555221111001112359999999999977764321 1111 111 2799999955 44 345
Q ss_pred HHHHHHHhccccCCceEEeecCCCChHH
Q 007044 281 DVELILGKVEDANKVQTLLFSATLPSWV 308 (620)
Q Consensus 281 ~l~~il~~~~~~~~~q~ll~SATl~~~~ 308 (620)
.....+..++. ......|+|.-..+
T Consensus 530 ~~a~M~~rL~~---in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 530 AAAEMVRRLHA---INRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHhhh---hceeeecCCchhhh
Confidence 55666666664 57899999943333
No 218
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.32 E-value=0.0028 Score=75.90 Aligned_cols=91 Identities=24% Similarity=0.396 Sum_probs=74.4
Q ss_pred CeEEEEEcccccHHHHHHhcc-----cchhhccccc-----------hHHHHHHHHHhhcCCceEEEecccccccCCCCC
Q 007044 364 GRTIIFTETKESASQLADLLP-----GARALHGDIQ-----------QSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427 (620)
Q Consensus 364 ~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~-----------~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~ 427 (620)
-..|+||+....+..+...+. ....+.|.+. +-.+..++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 357999999999888888776 1222223221 223678999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHhcccccCC
Q 007044 428 VQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (620)
Q Consensus 428 v~~VI~~d~P~s~~~yiqr~GRtgR~g 454 (620)
++.|+.++.|.....|+|+.||+-+++
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996654
No 219
>PHA02533 17 large terminase protein; Provisional
Probab=96.31 E-value=0.028 Score=61.90 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..|.|+|...+..+..++-.++..+=..|||.+.+..++...... .+..+++++|++.-|..+.+.++.
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-----------~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-----------KDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-----------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 367899999998876666667777778999998765554433322 233699999999999999888775
Q ss_pred hhcCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHH
Q 007044 210 YGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (620)
Q Consensus 210 ~~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~ 287 (620)
...... +....... ......+.++..|.+.|... +...-.+..++|+||+|.+-+ +.+.+..+..
T Consensus 127 ~ie~~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p 193 (534)
T PHA02533 127 AIELLPDFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQP 193 (534)
T ss_pred HHHhCHHHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHH
Confidence 443211 11000000 01111224456665554321 112233467899999997643 2333444444
Q ss_pred hccccCCceEEeecCCC
Q 007044 288 KVEDANKVQTLLFSATL 304 (620)
Q Consensus 288 ~~~~~~~~q~ll~SATl 304 (620)
.+......+++++|..-
T Consensus 194 ~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 194 VISSGRSSKIIITSTPN 210 (534)
T ss_pred HHHcCCCceEEEEECCC
Confidence 44432233566666553
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.30 E-value=0.0095 Score=52.56 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCcEEEECCCCChhhHHhH
Q 007044 146 GSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~ 164 (620)
+..+++.||+|||||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 5678999999999997543
No 221
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.24 E-value=0.1 Score=55.95 Aligned_cols=130 Identities=22% Similarity=0.254 Sum_probs=67.0
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEE-ccc-HHHHHHHHHHHHHhhcCCCceEEEEe
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVL-LPT-RELAKQVHEDFDVYGGAVGLTSCCLY 222 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l-~~~~~~~~~~~~~~~~~~~Lil-~Pt-reLa~Qv~~~~~~~~~~~~~~v~~~~ 222 (620)
++.+++.||||+|||.+.+--+.... ..+. .++.++ +-+ |.-+ .+.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g------------~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~---- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK------------KKVALITLDTYRIGA---VEQLKTYAKIMGIPV---- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------CeEEEEECCccHHHH---HHHHHHHHHHhCCce----
Confidence 56789999999999976544333322 2211 124433 322 3222 233444443333322
Q ss_pred CCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh-hcCcHHHHHHHHHhccccCCceEEeec
Q 007044 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFS 301 (620)
Q Consensus 223 gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~~~~q~ll~S 301 (620)
..+.++..+...+.+ +.+.++|++|-+-+.- +......+..++..... +....+++|
T Consensus 282 -----------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~-~~~~~LVl~ 339 (424)
T PRK05703 282 -----------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE-PIDVYLVLS 339 (424)
T ss_pred -----------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC-CCeEEEEEE
Confidence 223445555555542 3457889999885432 11223445555552211 124577889
Q ss_pred CCCCh-HHHHHHHHhc
Q 007044 302 ATLPS-WVKHISTKFL 316 (620)
Q Consensus 302 ATl~~-~~~~~~~~~~ 316 (620)
||... .+..+...|-
T Consensus 340 a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 340 ATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 98765 4455555553
No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=96.23 E-value=0.016 Score=56.85 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCCccEEEeccchhhhhc-CcHHHHHHHHHhccccCCceEEeecCCCChH
Q 007044 259 LSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSW 307 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SATl~~~ 307 (620)
+.+.++||+||+|.+... .+...+..++..+... +.+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCCChH
Confidence 346689999999987532 2334555566655432 34567788876553
No 223
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.20 E-value=0.019 Score=56.99 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=27.8
Q ss_pred CccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 256 ~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
......++++|+||||.|.... +..+...+...+. ...+++..--
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~--~trFiLIcny 168 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSR--TTRFILICNY 168 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhcccc--ceEEEEEcCC
Confidence 3456678999999999996332 4445555555433 4455555444
No 224
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.15 E-value=0.017 Score=51.84 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=53.1
Q ss_pred ccchHHHHHHHHHhhcCC-ceEEEecccccccCCCCC--ccEEEEcCCCCC-----------------------------
Q 007044 392 DIQQSQREVTLAGFRSGK-FMTLVATNVAARGLDIND--VQLIIQCEPPRD----------------------------- 439 (620)
Q Consensus 392 ~l~~~~R~~~~~~F~~g~-~~vLvaTdv~~rGlDi~~--v~~VI~~d~P~s----------------------------- 439 (620)
+....+...+++.|+... ..||++|.-+++|||+|+ ++.||..++|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344445677888898654 379999988999999997 567888887731
Q ss_pred --HHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 440 --VEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 440 --~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
.....|.+||.-|....--++.+++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D~R 138 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIADKR 138 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEecc
Confidence 122357789999987654456666654
No 225
>PRK05642 DNA replication initiation factor; Validated
Probab=96.13 E-value=0.018 Score=56.65 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCCccEEEeccchhhhhc-CcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 259 LSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
+.++++||+|++|.+... .+...+-.++..+... ...+++++|.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--GRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--CCEEEEeCCCCH
Confidence 335578999999977432 3445577777766542 244667777554
No 226
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.10 E-value=0.02 Score=66.04 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..++|-|.+++.+ ....++|.|..|||||.+...-+...+..... ..-++|+|+.|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---------~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA---------SPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------CHHHeEeeeccHHHHHHHHHHHHH
Confidence 4689999999865 34679999999999999876666655543211 223599999999999999998877
Q ss_pred hh
Q 007044 210 YG 211 (620)
Q Consensus 210 ~~ 211 (620)
+.
T Consensus 72 ~~ 73 (715)
T TIGR01075 72 LL 73 (715)
T ss_pred Hh
Confidence 64
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.05 E-value=0.015 Score=55.39 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCccEEEeccchhhh-hcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 260 ~~l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
+++++|++|-+-+.. +......+..++..+.. ..-.+.+|||+.......+..|.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~--~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNP--DEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS--SEEEEEEEGGGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC--ccceEEEecccChHHHHHHHHHh
Confidence 446678888775432 22234566666666643 34667899998876555555554
No 228
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.04 E-value=0.022 Score=60.40 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHcCCcEEEECCCCChhhHHhH
Q 007044 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 132 ~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~ 164 (620)
+-......+..+..++++++.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777789999999999999997653
No 229
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.95 E-value=0.046 Score=53.32 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=16.9
Q ss_pred cCCcEEEECCCCChhhHHhHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~l 165 (620)
.+..+++.|++|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356899999999999975443
No 230
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.93 E-value=0.023 Score=62.25 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=84.5
Q ss_pred HHHHHHHHHHH-----cC----CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 134 PIQAMTFDMVL-----DG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 134 ~~Q~~~i~~il-----~g----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
|+|.-.+-.++ .| +.+++.-+=|.|||......++..+.-.. ..++.+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 67887777666 12 45888889999999865555444443321 24567999999999999999
Q ss_pred HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc--CCccCCCccEEEeccchhhhhcCcHHHH
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~--~~~~l~~l~~lVlDEah~~l~~~f~~~l 282 (620)
+.+..+.......... .. . .... ...-.|..-..+.++..+.+ +..+-.+..++|+||+|.+-+....+.+
T Consensus 72 ~~~~~~i~~~~~l~~~-~~-~----~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l 144 (477)
T PF03354_consen 72 DEAKKMIEASPELRKR-KK-P----KIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDAL 144 (477)
T ss_pred HHHHHHHHhChhhccc-hh-h----hhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHH
Confidence 9988765432110000 00 0 0000 00123333333333333322 2333445789999999988654444444
Q ss_pred HHHHHhccccCCceEEeec
Q 007044 283 ELILGKVEDANKVQTLLFS 301 (620)
Q Consensus 283 ~~il~~~~~~~~~q~ll~S 301 (620)
..-....+ +++++..|
T Consensus 145 ~~g~~~r~---~pl~~~IS 160 (477)
T PF03354_consen 145 ESGMGARP---NPLIIIIS 160 (477)
T ss_pred HhhhccCC---CceEEEEe
Confidence 44444433 45666553
No 231
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.92 E-value=0.03 Score=64.21 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 132 ~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
++|-|.+++.. ...+++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY---------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899998865 35689999999999999877777666643211 22359999999999999998887654
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.89 E-value=0.064 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=15.6
Q ss_pred EEEECCCCChhhHHhHHHHHH
Q 007044 149 LVGRARTGQGKTLAFVLPILE 169 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~ 169 (620)
+++.|++|+|||......+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 678999999999755444333
No 233
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.84 E-value=0.043 Score=54.01 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=26.1
Q ss_pred ccEEEeccchhhhhc-CcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 262 LKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 262 l~~lVlDEah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
+++|++||+|.+... .+...+..++..+....+.+ +++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~-li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR-LLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe-EEEeCCCCh
Confidence 468999999988532 34455556666554322234 555666554
No 234
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.84 E-value=0.029 Score=64.72 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..++|-|.+++.+. ...++|.|..|||||.+..--+...+..... ..-++|+|+-|+..|..+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA---------SPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------ChhHeEeeeccHHHHHHHHHHHHH
Confidence 35899999998643 4679999999999999876666655543211 223599999999999999998877
Q ss_pred hh
Q 007044 210 YG 211 (620)
Q Consensus 210 ~~ 211 (620)
+.
T Consensus 77 ~~ 78 (721)
T PRK11773 77 LL 78 (721)
T ss_pred Hh
Confidence 64
No 235
>PRK08727 hypothetical protein; Validated
Probab=95.82 E-value=0.046 Score=53.69 Aligned_cols=17 Identities=29% Similarity=0.145 Sum_probs=14.1
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-++++|++|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999643
No 236
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.80 E-value=0.02 Score=51.50 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHHhhcCCc---eEEEeccc--ccccCCCCC--ccEEEEcCCCCC----H-------------------------
Q 007044 397 QREVTLAGFRSGKF---MTLVATNV--AARGLDIND--VQLIIQCEPPRD----V------------------------- 440 (620)
Q Consensus 397 ~R~~~~~~F~~g~~---~vLvaTdv--~~rGlDi~~--v~~VI~~d~P~s----~------------------------- 440 (620)
+...+++.|+...- .||+++.- +++|||+|+ ++.||..++|.. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44577788876443 68888877 999999997 678998887731 1
Q ss_pred --HHHHHHhcccccCCCccEEEEEeCCC
Q 007044 441 --EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 441 --~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
....|.+||.-|....--+++|++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~R 139 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDKR 139 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEecc
Confidence 12358889999987654566666665
No 237
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.77 E-value=0.039 Score=58.95 Aligned_cols=147 Identities=15% Similarity=0.296 Sum_probs=82.6
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH-HHHHHHHHHHHhhcCCCceEEEEeCCcch
Q 007044 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE-LAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre-La~Qv~~~~~~~~~~~~~~v~~~~gg~~~ 227 (620)
.++.|..|||||.+.++-++..+.... .+.+++|+-|+.. |..-+...+.......++....-....+.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~----------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~ 73 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK----------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM 73 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC----------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc
Confidence 678999999999998888887776631 2345899999886 66667777765544334321111111100
Q ss_pred HHHHHHhcC-CCcEEEeCh-HHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 228 HAQEFKLKK-GIDVVIGTP-GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 228 ~~~~~~l~~-~~~IlV~Tp-~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
...+.. +..|++..- ....+ +. ....+.++.+|||..+.. +.+..++..+........+++|.|.+
T Consensus 74 ---~i~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 74 ---EIKILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPE 141 (396)
T ss_pred ---EEEecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcC
Confidence 001111 344555443 11111 11 123368999999998842 34455555554322223578888866
Q ss_pred hHHHHHHHHhcc
Q 007044 306 SWVKHISTKFLK 317 (620)
Q Consensus 306 ~~~~~~~~~~~~ 317 (620)
..-..+.+.|..
T Consensus 142 ~~~~w~~~~f~~ 153 (396)
T TIGR01547 142 SPLHWVKKRFIE 153 (396)
T ss_pred CCccHHHHHHHh
Confidence 544555666653
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.75 E-value=0.041 Score=62.47 Aligned_cols=71 Identities=25% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+++-|++++-. ...+++|.|..|||||.+..--+...+.... ...-++|+++.|+..|..+.+.+..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~---------~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ---------AQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC---------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 5799999999853 3356899999999999876655554444331 1233699999999999999888865
Q ss_pred hh
Q 007044 210 YG 211 (620)
Q Consensus 210 ~~ 211 (620)
..
T Consensus 264 ~l 265 (684)
T PRK11054 264 RL 265 (684)
T ss_pred hc
Confidence 43
No 239
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.74 E-value=0.035 Score=55.86 Aligned_cols=120 Identities=12% Similarity=-0.027 Sum_probs=56.9
Q ss_pred HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEe
Q 007044 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~ 222 (620)
+..|.-+++.|++|+|||......+.+.+... +..+++++- -+-..++...+........+......
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~------------g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~ 93 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQH------------GVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTV 93 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc------------CceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCcc
Confidence 45678899999999999975444444433331 223777763 22334444444332211222110000
Q ss_pred CCcchHH---HHHHhcCCCcEE-Ee-----ChHHHHHHHhcCCccCCCccEEEeccchhhhhc
Q 007044 223 GGAPYHA---QEFKLKKGIDVV-IG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (620)
Q Consensus 223 gg~~~~~---~~~~l~~~~~Il-V~-----Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~ 276 (620)
....... ....+.....+. +- |+..+...+..-. .-.++++||||..+.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 94 FIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred ccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 0111111 112222212222 21 4455555554211 1235789999999988643
No 240
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.055 Score=55.89 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHHHcC----CcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g----~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.++|||...+..+... +-+++.||.|.|||..+.. +...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 4589999999887743 3588999999999965433 333443
No 241
>PRK06921 hypothetical protein; Provisional
Probab=95.67 E-value=0.12 Score=51.78 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.0
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.+..+++.|++|+|||.... .+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHh
Confidence 35789999999999996443 3334443
No 242
>PRK12377 putative replication protein; Provisional
Probab=95.66 E-value=0.12 Score=51.10 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
...+++.|++|+|||.... .+.+.+.... ..+ +.++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~g------------~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAKG------------RSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHcC------------CCe-EEEEHHHHHHHHHHH
Confidence 3679999999999996543 3333443221 114 444556777765443
No 243
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.53 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpi 167 (620)
.|+.+++.|+||+|||.....-+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46778899999999998654433
No 244
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.65 E-value=0.027 Score=64.27 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++|-|.+++.+ ....++|.|..|||||.+...-+...+..... ..-++|+|+.|+..|..+.+.+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999865 34678899999999999877777666643211 2235999999999999999888765
Q ss_pred h
Q 007044 211 G 211 (620)
Q Consensus 211 ~ 211 (620)
.
T Consensus 71 l 71 (672)
T PRK10919 71 L 71 (672)
T ss_pred h
Confidence 4
No 245
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.29 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=18.2
Q ss_pred CCcEEEECCCCChhhHHhHHHHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILE 169 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~ 169 (620)
++-+++.||||+|||....--+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999865544443
No 246
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.62 E-value=0.067 Score=50.32 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=33.2
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
+++.|++|+|||...+-.+.+.+..+. .++|++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-------------~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-------------PGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-------------cEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999765555555554432 3777754 466777777666553
No 247
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.54 E-value=0.18 Score=50.74 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=30.7
Q ss_pred CCccEEEeccchhhh-hcCcHHHHHHHHHhcc----ccCCceEEeecCCCChHHHHHHHHhc
Q 007044 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVE----DANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 260 ~~l~~lVlDEah~~l-~~~f~~~l~~il~~~~----~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
.++++||+|=+-++- +......+..+...++ ..+.--++.++||........+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 345666666555432 1223344555554443 11244677889998776555555555
No 248
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.45 E-value=0.024 Score=62.89 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH-H
Q 007044 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE-D 206 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~-~ 206 (620)
...+|+|.+.+..+... +.|+++.++-+|||.+....+...+...+. -+|++.||.++|..... .
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~------------~~l~v~Pt~~~a~~~~~~r 82 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG------------PMLYVQPTDDAAKDFSKER 82 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC------------CEEEEEEcHHHHHHHHHHH
Confidence 36789999999887754 679999999999999666555544544432 28999999999998873 4
Q ss_pred HHHhhcCCCceEEEEeC----CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 207 FDVYGGAVGLTSCCLYG----GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~g----g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
|..+......--..+.. ..........+. +..+.++..+.- ..+.-..++++++||.|.+-
T Consensus 83 l~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 83 LDPMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 44443322110011111 011111111112 333444332211 12344568999999999984
No 249
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.40 E-value=0.12 Score=63.13 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHh--HHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAF--VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~--~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
.+++-|.+++..++.+ +-++++|..|+|||.+. ++-++..+... .+.+++.++||---+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-----------~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-----------ERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-----------cCceEEEEechHHHHHHHH
Confidence 7899999999999965 66999999999999864 23333333221 2345888999977776653
No 250
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.37 E-value=0.12 Score=55.32 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=32.9
Q ss_pred ccEEEeccchhhh-hcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 262 LKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 262 l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
.++||+|.+-++. +....+.+..+...+.. ..-++.++||........++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~p--devlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKP--DEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcc--cceeEEEeccccHHHHHHHHHHH
Confidence 3789999995442 22234445555555433 34577789988876666666654
No 251
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.19 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=17.8
Q ss_pred CCcEEEECCCCChhhHHhHHHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil 168 (620)
|+-+.+.||||+|||.+......
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45688999999999987655443
No 252
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.35 E-value=0.1 Score=55.22 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHHH----HcCCcEEEECCCCChhhHHhHHHHHHHHhCC
Q 007044 129 IESLFPIQAMTFDMV----LDGSDLVGRARTGQGKTLAFVLPILESLTNG 174 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~i----l~g~dvi~~a~TGsGKTla~~lpil~~l~~~ 174 (620)
|...+|-|-+-+-.+ -.+.+.++-.|+|+|||.+.+-.++.....-
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~ 63 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY 63 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhC
Confidence 445567676554332 3567899999999999988666665554443
No 253
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.28 E-value=0.52 Score=47.16 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=68.8
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEE-EEccc-H-HHHHHHHHHHHHhhcCCCceEEEE
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL-VLLPT-R-ELAKQVHEDFDVYGGAVGLTSCCL 221 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~L-il~Pt-r-eLa~Qv~~~~~~~~~~~~~~v~~~ 221 (620)
.+..+.+.+++|+|||..+..-+......+ .++. |-+-+ | ..+.|+.. ++...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-------------~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~-- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-------------KTVGFITTDHSRIGTVQQLQD----YVKTIGFEVI-- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-------------CeEEEEecCCCCHHHHHHHHH----HhhhcCceEE--
Confidence 446789999999999987655443322211 1233 33322 2 34444443 3222223221
Q ss_pred eCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEee
Q 007044 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLF 300 (620)
Q Consensus 222 ~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~ 300 (620)
...+|..+.+.+..- -...+++++++|-+=++-. ......+..++..... ..-.+.+
T Consensus 135 -------------------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~--~~~~LVl 192 (270)
T PRK06731 135 -------------------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTL 192 (270)
T ss_pred -------------------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC--CeEEEEE
Confidence 123555555554321 1123578899998866531 1223344444444332 2245679
Q ss_pred cCCCC-hHHHHHHHHhc
Q 007044 301 SATLP-SWVKHISTKFL 316 (620)
Q Consensus 301 SATl~-~~~~~~~~~~~ 316 (620)
|||.. ......++.|-
T Consensus 193 ~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 193 SASMKSKDMIEIITNFK 209 (270)
T ss_pred cCccCHHHHHHHHHHhC
Confidence 99864 46667777775
No 254
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.27 Score=53.42 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
....+++|+||+|.|... ....+++.+..++..-+++|.+|-+
T Consensus 114 ~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred cCCceEEEEeChHhCCHH----HHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 457889999999988543 3345555554433333444555533
No 255
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.16 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=17.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpi 167 (620)
.|.-+.+.||||+|||.....-+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35568899999999998765443
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.25 E-value=0.22 Score=51.47 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.7
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
.+.++++.|+||+|||....
T Consensus 182 ~~~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH
Confidence 35889999999999997543
No 257
>PRK08116 hypothetical protein; Validated
Probab=95.24 E-value=0.52 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=18.8
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
..++++|++|+|||..+. .+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 349999999999997544 35555543
No 258
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.42 Score=50.57 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCccEEEeccchhhh-hcCcHHHHHHHHHhcccc-CCceEEeecCCCCh-HHHHHHHHhc
Q 007044 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDA-NKVQTLLFSATLPS-WVKHISTKFL 316 (620)
Q Consensus 260 ~~l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~-~~~q~ll~SATl~~-~~~~~~~~~~ 316 (620)
.+.++|++|=+-++. +......+..++...... +....+++|||... .+....+.|-
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 456788888665442 222334445555544221 12356778999877 5556666553
No 259
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.17 E-value=0.12 Score=51.66 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.3
Q ss_pred CcEEEECCCCChhhHHhH
Q 007044 147 SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (620)
.++++.||+|||||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999997643
No 260
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.15 E-value=0.23 Score=61.59 Aligned_cols=66 Identities=26% Similarity=0.326 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
..+++.|.+++..++.+ +-++++|..|+|||...- .++..+.... ...+.+++.++||---|.++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~--------~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLP--------ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhh--------cccCceEEEECCcHHHHHHHH
Confidence 37899999999999975 568999999999997632 2222222100 012345888999977776543
No 261
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.21 Score=46.64 Aligned_cols=105 Identities=20% Similarity=0.116 Sum_probs=61.5
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~ 226 (620)
+=.+++||.+||||...+--+-.....+ -++++..|- +... .+...+.-.-|.+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g-------------~~v~vfkp~----------iD~R---~~~~~V~Sr~G~~ 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAG-------------MKVLVFKPA----------IDTR---YGVGKVSSRIGLS 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcC-------------CeEEEEecc----------cccc---cccceeeeccCCc
Confidence 3467899999999986554444444333 248888885 1111 1111111112222
Q ss_pred hHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
..-++|-.+..+.+++........ +++|.+|||+-+ +......+..+.+.+
T Consensus 59 ----------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 59 ----------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred ----------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 145777788888888876443332 889999999965 444444555555543
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.13 E-value=0.12 Score=50.51 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=25.6
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
+.++||+||+|.+- ..-...+..++...... ...+++++++.++
T Consensus 90 ~~~~liiDdi~~l~-~~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLD-DAQQIALFNLFNRVRAH-GQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcC-chHHHHHHHHHHHHHHc-CCcEEEEeCCCCH
Confidence 45689999999874 22234444555544331 2235677777554
No 263
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.12 E-value=0.11 Score=63.52 Aligned_cols=124 Identities=20% Similarity=0.189 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
++|+-|.++|. ..+++++|.|.-|||||.+..--++..+..+. ..-++|+|+=|+..|..+.+.+...
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~----------~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV----------DIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC----------CHhhEEEEeccHHHHHHHHHHHHHH
Confidence 35899999997 46889999999999999988777777776541 1124899999999999888877643
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCc--cEEEeccchh
Q 007044 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL--KFRVLDEADE 272 (620)
Q Consensus 211 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l--~~lVlDEah~ 272 (620)
.... +. .........+.+..-...-|+|-..+...+-+.....-++ .+=|+||...
T Consensus 69 l~~~-~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 69 LQKA-LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHH-Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 2210 00 0001111122233334567899888876665433222222 4556888776
No 264
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.11 E-value=0.011 Score=54.95 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=56.1
Q ss_pred EEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHH
Q 007044 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (620)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~ 229 (620)
|+.|+-|-|||.+..+.+...+..+. .+++|.+|+.+-+..+.+.+..-....+++........ .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~------------~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK------------IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---Q 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC------------ceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---c
Confidence 57899999999987776654444332 35999999999888887766544433333320000000 0
Q ss_pred HHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 230 ~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
.......+..|-+..|..+... ....+++|+|||=.+- ...+..++.. ...++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~------~~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR------FPRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC------SSEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh------CCEEEEEeecc
Confidence 0000112467777788776432 2234789999998663 3444555432 34677888864
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.01 E-value=0.1 Score=50.63 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred CCCccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCCChHH
Q 007044 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl~~~~ 308 (620)
+.+.++|+||..|.+.... +.+.+-.++..+... +.++++.|...|...
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES-GKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccc
Confidence 5578899999999886432 345566666666543 457777776766543
No 266
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.01 E-value=0.0015 Score=72.25 Aligned_cols=73 Identities=25% Similarity=0.420 Sum_probs=55.8
Q ss_pred hhhHHHHHHh-cCCCCeEEEEEcccccHHHHHHhcc---cchhhccccchHHHHHHHHHhh---cCCceEEEeccccccc
Q 007044 350 SQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR---SGKFMTLVATNVAARG 422 (620)
Q Consensus 350 ~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~---~~~~lh~~l~~~~R~~~~~~F~---~g~~~vLvaTdv~~rG 422 (620)
..+|..+++. ...+.+++||.+-....+-|.+++. ....+.|......|...+.+|. ...+..|.+|...+-|
T Consensus 617 ~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 617 LTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3344444433 3467899999999999988888887 5667899999999999999998 3567888999765544
No 267
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.24 Score=50.88 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCCCcHHHHHHHHHHH----cCC---cEEEECCCCChhhHHhHHHHHHHHh
Q 007044 129 IESLFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~g~---dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
+..++|+|..++..+. .|+ -+++.||.|+||+..+.. +...+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~Ll 51 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVL 51 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHh
Confidence 3568999999997765 332 599999999999865433 344443
No 268
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.19 Score=57.05 Aligned_cols=130 Identities=16% Similarity=0.247 Sum_probs=64.3
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEEc-ccHHHHHHHHHHHHHhhcCCCceEEEEeC
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLL-PTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l-~~~~~~~~~~~~~~~~~~~Lil~-PtreLa~Qv~~~~~~~~~~~~~~v~~~~g 223 (620)
|+-+.+.||||+|||.++..-..... ..+.. ++.++. -|--.+ ..+.++.++...++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k------------kV~lit~Dt~Rig--A~eQL~~~a~~~gvpv----- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGAD------------QLALLTTDSFRIG--ALEQLRIYGRILGVPV----- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCC------------eEEEecCcccchH--HHHHHHHHHHhCCCCc-----
Confidence 34578999999999987655443332 22111 233333 221111 1234444444444332
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecC
Q 007044 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
.++.+|..+.+.+.. +.+.++|+||=+=+.-. ....+.+..+...... ...++++||
T Consensus 246 ----------------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p--~e~~LVLsA 303 (767)
T PRK14723 246 ----------------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP--VRRLLLLNA 303 (767)
T ss_pred ----------------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCC--CeEEEEECC
Confidence 223466666665552 34557788886665421 1122333333332222 335667788
Q ss_pred CCCh-HHHHHHHHhc
Q 007044 303 TLPS-WVKHISTKFL 316 (620)
Q Consensus 303 Tl~~-~~~~~~~~~~ 316 (620)
|... .+..+.+.|-
T Consensus 304 t~~~~~l~~i~~~f~ 318 (767)
T PRK14723 304 ASHGDTLNEVVHAYR 318 (767)
T ss_pred CCcHHHHHHHHHHHh
Confidence 8654 3445666663
No 269
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.92 E-value=0.27 Score=53.41 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=26.8
Q ss_pred CCccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCCChHH
Q 007044 260 SSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl~~~~ 308 (620)
.++++|||||+|.+.... ....+-.++..+... ..++++.|-+.|..+
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~-~~~iiits~~~p~~l 258 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA-GKQIVLTSDRPPKEL 258 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCcEEEECCCCHHHH
Confidence 356789999999875322 234455555555432 345555444444443
No 270
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.90 E-value=0.12 Score=58.27 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (620)
.++..-..+.....+.+..-|.+.+..++.+ +-+++.|.=|=|||.+..+.+........ ..+++|.
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-----------~~~iiVT 267 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-----------SVRIIVT 267 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-----------CceEEEe
Confidence 3333334466666666666666667777754 36889999999999998877743333221 2359999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh-cCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchh
Q 007044 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272 (620)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~ 272 (620)
+|+.+-+..+...+.+-....|++-........ ..... .+...|=+-+|.... ..-++||+|||=.
T Consensus 268 AP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAa 334 (758)
T COG1444 268 APTPANVQTLFEFAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAA 334 (758)
T ss_pred CCCHHHHHHHHHHHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhc
Confidence 999998888887766544444443222211100 00000 112335555555432 1157899999986
Q ss_pred hhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 273 ~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
+- .+-+..++... +.++||.|+.
T Consensus 335 Ip----lplL~~l~~~~------~rv~~sTTIh 357 (758)
T COG1444 335 IP----LPLLHKLLRRF------PRVLFSTTIH 357 (758)
T ss_pred CC----hHHHHHHHhhc------CceEEEeeec
Confidence 63 34455555433 5688888864
No 271
>CHL00181 cbbX CbbX; Provisional
Probab=94.90 E-value=0.5 Score=47.92 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.8
Q ss_pred CCcEEEECCCCChhhHHhHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lp 166 (620)
|.++++.||+|||||..+-.-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456999999999999865443
No 272
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.76 E-value=0.11 Score=53.27 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 122 EKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
..+...|+ +++.|...+..+. .+++++++|+||||||.. +-.++..+.... ..-+++++=.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~----------~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA----------PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC----------CCceEEEecCCcccc
Confidence 34555665 5677887776644 678999999999999964 334555543211 122577777787874
No 273
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.16 Score=54.64 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.4
Q ss_pred cEEEECCCCChhhHHhHHH
Q 007044 148 DLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lp 166 (620)
.+|++||.|+|||.++-+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999865443
No 274
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.8 Score=48.87 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
....+++|+||+|.|.. .....++..+..++..-+++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCH----HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 46678999999999863 234445555544333344555554
No 275
>PLN03025 replication factor C subunit; Provisional
Probab=94.70 E-value=0.32 Score=50.23 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.0
Q ss_pred CcEEEECCCCChhhHHhH
Q 007044 147 SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (620)
.+++++||+|+|||....
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997543
No 276
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.69 E-value=0.37 Score=51.29 Aligned_cols=53 Identities=6% Similarity=0.152 Sum_probs=29.6
Q ss_pred ccEEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 262 LKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 262 l~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
+++||+|=+-++-. ......+..+...+.. ..-+++++||........++.|.
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p--~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQP--DNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCC--cEEEEEeccccChhHHHHHHHHH
Confidence 45555555543311 1123444555544432 34567789998877777777774
No 277
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.67 E-value=0.2 Score=50.32 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=63.2
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH-HhhcCCCceEEEEeCCc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGA 225 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~-~~~~~~~~~v~~~~gg~ 225 (620)
.++++.|+||.|||... ++......... ......-|-++|-+|...-....+..+- .++....- ..
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~-d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-------~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQS-DEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-------RD 128 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCC-CCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-------CC
Confidence 68999999999999842 22221111111 1112344777888888766666665553 33322111 01
Q ss_pred chHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcH--HHHHHHHHhccccCCceEEeecCC
Q 007044 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~--~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+..... .....++. --++++||+||.|.++..... ..+...++.+.+.-...++++ .|
T Consensus 129 ~~~~~~--------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 129 RVAKLE--------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred CHHHHH--------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 111100 01122222 345789999999999865532 233344445444223445544 45
No 278
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.66 E-value=0.11 Score=53.53 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=44.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH
Q 007044 120 LREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (620)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (620)
.+..|...|+ +++.|.+.+.. +..+++++++|+||||||. ++-.++..+.... ...+++++-.+.|
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~----------~~~rivtIEd~~E 189 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD----------PTERVFIIEDTGE 189 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC----------CCceEEEEcCCCc
Confidence 3455666676 45778888865 4577899999999999995 4444554432111 1235788888887
Q ss_pred HH
Q 007044 199 LA 200 (620)
Q Consensus 199 La 200 (620)
|.
T Consensus 190 l~ 191 (319)
T PRK13894 190 IQ 191 (319)
T ss_pred cc
Confidence 73
No 279
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.61 E-value=0.23 Score=53.15 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=24.8
Q ss_pred CccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
+.++|||||+|.+.... ....+-.++..+... +.+++ ++++.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~-~~~ii-its~~~p 243 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN-GKQIV-LTSDRPP 243 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCCEE-EecCCCH
Confidence 35789999999875432 233445555554332 34554 5555443
No 280
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.60 E-value=1.6 Score=48.13 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=70.7
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHhcccch----------hhccccchHHHHHHHHHhh----cCCceEEEec--
Q 007044 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----------ALHGDIQQSQREVTLAGFR----SGKFMTLVAT-- 416 (620)
Q Consensus 353 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~----------~lh~~l~~~~R~~~~~~F~----~g~~~vLvaT-- 416 (620)
+..+.... + +.+++|++|..-...+...+...+ ++.-.... -+.+++.|. .|.=.+|+|.
T Consensus 621 ~~nL~~~V-P-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVG 696 (821)
T KOG1133|consen 621 ISNLSNAV-P-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVG 696 (821)
T ss_pred HHHHHhhC-C-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEec
Confidence 44444444 3 789999999988777776665111 11111111 245566554 2443455553
Q ss_pred ccccccCCCCC--ccEEEEcCCCCC------------------------HHH--------HHHHhcccccCCCccEEEEE
Q 007044 417 NVAARGLDIND--VQLIIQCEPPRD------------------------VEA--------YIHRSGRTGRAGNTGVAVML 462 (620)
Q Consensus 417 dv~~rGlDi~~--v~~VI~~d~P~s------------------------~~~--------yiqr~GRtgR~g~~G~~i~l 462 (620)
--++.|||+.+ ++.||..++|.. -+- --|-+|||-|.-+.--+|++
T Consensus 697 GKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~L 776 (821)
T KOG1133|consen 697 GKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYL 776 (821)
T ss_pred cccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEE
Confidence 55789999987 788999998842 112 23888999998777778888
Q ss_pred eCCC
Q 007044 463 YDPR 466 (620)
Q Consensus 463 ~~~~ 466 (620)
++.+
T Consensus 777 lD~R 780 (821)
T KOG1133|consen 777 LDKR 780 (821)
T ss_pred ehhh
Confidence 8887
No 281
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.60 E-value=0.079 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=17.3
Q ss_pred CCcEEEECCCCChhhHHhHHHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil 168 (620)
++.++++||||+|||....--+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999986544433
No 282
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.48 E-value=0.24 Score=51.48 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.7
Q ss_pred cEEEECCCCChhhHHhH
Q 007044 148 DLVGRARTGQGKTLAFV 164 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (620)
.+++.||+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999997543
No 283
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.45 E-value=0.23 Score=53.82 Aligned_cols=91 Identities=21% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCCHH-HHHHHHHCCCCCCcH----HHHHHHHHHH--cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 115 RISVP-LREKLKSKGIESLFP----IQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 115 ~l~~~-l~~~l~~~g~~~~~~----~Q~~~i~~il--~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
++.++ |+..|.+.--..+.. +|.+==..|. .++-+||+|..|||||.+++--+.-.+...+.. ..+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-------l~~ 260 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-------LQA 260 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-------ccc
Confidence 44444 455676665555543 3443333344 456799999999999998877666666654432 122
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGG 212 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (620)
..+||+.|.+-+..-+...+-.++.
T Consensus 261 k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 261 KPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CceEEEcCcHHHHHHHHHhchhhcc
Confidence 2399999999999998888877764
No 284
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.45 E-value=0.44 Score=55.27 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=17.1
Q ss_pred CcEEEECCCCChhhHHhHHHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil 168 (620)
+-+|++|+.|+|||.+..+..-
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999987655443
No 285
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.43 E-value=0.26 Score=62.60 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhH---HHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFV---LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~---lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
..+++.|.+++..++.+ +-++++|..|+|||.... -++.+.+.. .+.+++.++||-.-|.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------------cCCeEEEEeChHHHHHHHH
Confidence 47899999999999866 457889999999997651 233333332 2345888999976666553
No 286
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.33 E-value=0.6 Score=53.47 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=17.4
Q ss_pred CCccEEEeccchhhhhcCcHHHHHHHHH
Q 007044 260 SSLKFRVLDEADEMLRMGFVEDVELILG 287 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~f~~~l~~il~ 287 (620)
..+.+|||||+|.+...+ .+.+-.++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR 894 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFD 894 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHH
Confidence 346689999999997542 333444444
No 287
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.31 E-value=0.17 Score=53.87 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=15.0
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.++++.||+|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999753
No 288
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.28 E-value=0.21 Score=51.52 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=23.2
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
..++||+||+|.+........+..++...+. +.+++ ++++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~--~~~~I-lt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSK--NCSFI-ITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCC--CceEE-EEcC
Confidence 4578999999988322234445555555443 34444 4444
No 289
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.21 E-value=0.48 Score=50.73 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=16.6
Q ss_pred cEEEECCCCChhhHHhHHHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPILE 169 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~ 169 (620)
-++++|++|+|||.+..--+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999875444433
No 290
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.19 E-value=0.45 Score=51.38 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=31.2
Q ss_pred CCCccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHH
Q 007044 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~ 313 (620)
+.+.++|++||+|.+.... ..+.+..++..+... ..|+++.|-+.|..+..+..
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l~~ 254 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAMEE 254 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhhHH
Confidence 3467899999999875432 344555565544332 34655555555655544433
No 291
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.14 E-value=0.69 Score=51.51 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=82.2
Q ss_pred CCcHHHHHHHHHHH---cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVL---DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 131 ~~~~~Q~~~i~~il---~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
-|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+.+...+... +.+++|.+|...-+.++.+.+
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~------------Gi~IlvTAH~~~ts~evF~rv 236 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL------------EIDIVVQAQRKTMCLTLYNRV 236 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc------------CCeEEEECCChhhHHHHHHHH
Confidence 34555555454443 456788889999999987665555433311 235999999999999988887
Q ss_pred HHhhcCCC--------ceEEEEeCCcchHHHH--HHhcCC-CcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc
Q 007044 208 DVYGGAVG--------LTSCCLYGGAPYHAQE--FKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (620)
Q Consensus 208 ~~~~~~~~--------~~v~~~~gg~~~~~~~--~~l~~~-~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~ 276 (620)
.......+ ..+..+.||...-... ...+.+ ..|.+++-. .+...-..++++|+|||..+-.
T Consensus 237 ~~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 237 ETVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH-
Confidence 76654221 1222233322100000 000001 223332221 1223334568999999998753
Q ss_pred CcHHHHHHHHHhccccCCceEEeecCCC
Q 007044 277 GFVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 277 ~f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
+.+..++-.+... ..+.+++|.+-
T Consensus 309 ---~~l~aIlP~l~~~-~~k~IiISS~~ 332 (752)
T PHA03333 309 ---GALLSVLPLMAVK-GTKQIHISSPV 332 (752)
T ss_pred ---HHHHHHHHHHccC-CCceEEEeCCC
Confidence 4455566555543 34556666654
No 292
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.12 E-value=0.35 Score=52.32 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=59.9
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~ 226 (620)
..+++.|++|+|||... ..+.+.+.... .+.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~----------~~~~v~yv~~-~~f~~~~~~~l~~~~--------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF----------SDLKVSYMSG-DEFARKAVDILQKTH--------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC----------CCCeEEEEEH-HHHHHHHHHHHHHhh---------------
Confidence 45899999999999533 33344443211 2234666654 566666555443200
Q ss_pred hHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc-CcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
+.+..... .+.++++||+||+|.+... ...+.+-.++..+... ..|+++.|-..|
T Consensus 195 -------------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~k~iIltsd~~P 250 (450)
T PRK14087 195 -------------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-DKQLFFSSDKSP 250 (450)
T ss_pred -------------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCcEEEECCCCH
Confidence 11111111 1446778999999977432 2345566666665543 236655555444
Q ss_pred hHH
Q 007044 306 SWV 308 (620)
Q Consensus 306 ~~~ 308 (620)
...
T Consensus 251 ~~l 253 (450)
T PRK14087 251 ELL 253 (450)
T ss_pred HHH
Confidence 433
No 293
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.11 E-value=0.57 Score=50.64 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=28.5
Q ss_pred CccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCCChHHHHH
Q 007044 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~ 311 (620)
+.++|++||+|.+.+.. ....+..++..+... ..++++.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHHH
Confidence 46789999999886432 234455555555442 235555444445444444
No 294
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.08 E-value=0.37 Score=53.68 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
....+++|+||+|.|... ....+++.+..++..-+++|.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~----a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG----AFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 456789999999988543 3344555554433333444444544
No 295
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.08 E-value=0.24 Score=52.14 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=14.6
Q ss_pred cEEEECCCCChhhHHhHH
Q 007044 148 DLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~l 165 (620)
-+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999976543
No 296
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.71 Score=48.46 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=29.6
Q ss_pred HHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 247 rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
++++++.. ....-+||+||+|.|.+..- +.+-.++...... ..++.++.-+...
T Consensus 113 ~l~~~~~~----~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~-~~~v~vi~i~n~~ 166 (366)
T COG1474 113 RLYDNLSK----KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN-KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHh----cCCeEEEEEcchhhhccccc-hHHHHHHhhcccc-ceeEEEEEEeccH
Confidence 34454443 33445799999999987654 4444444443332 3445444444333
No 297
>PRK09183 transposase/IS protein; Provisional
Probab=94.01 E-value=0.37 Score=48.12 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHcCCcEEEECCCCChhhHHhHHHH
Q 007044 143 VLDGSDLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~~lpi 167 (620)
+..|.++++.||+|+|||.......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4468899999999999997544333
No 298
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.42 Score=54.06 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=14.6
Q ss_pred cEEEECCCCChhhHHhHH
Q 007044 148 DLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~l 165 (620)
-+|++|+.|+|||....+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999976543
No 299
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.51 Score=51.67 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.3
Q ss_pred CcEEEECCCCChhhHHhHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lp 166 (620)
+.+|++||.|+|||.++-+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999865443
No 300
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.95 E-value=0.65 Score=47.07 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.7
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.++++.||+|||||..+
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999765
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.90 E-value=0.6 Score=48.05 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCccEEEeccchhhh-hcCcHHHHHHHHHhc----cccCCceEEeecCCCChHHHHHHHHhc
Q 007044 260 SSLKFRVLDEADEML-RMGFVEDVELILGKV----EDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 260 ~~l~~lVlDEah~~l-~~~f~~~l~~il~~~----~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
.++++||+|=+-++- +....+.+..+...+ +..+..-++.++||........+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 456777888776543 222334455554432 222234568899998775544555554
No 302
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.89 E-value=1.2 Score=40.73 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCCccEEEeccchhhhhcCc--HHHHHHHHHhccccCCceEEeecCCCChHHHHHHH
Q 007044 259 LSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f--~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~ 313 (620)
...+++|||||+=..++.++ .+++..+++..|. ..-+|+.+-.+|+++..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~--~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE--DLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC--CCEEEEECCCCCHHHHHhCc
Confidence 45689999999999888885 4556666666655 55677777778887766543
No 303
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.85 E-value=0.58 Score=46.85 Aligned_cols=36 Identities=11% Similarity=-0.029 Sum_probs=24.9
Q ss_pred CCCCcHHHHHHHHHHH----cC-CcEEEECCCCChhhHHhH
Q 007044 129 IESLFPIQAMTFDMVL----DG-SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il----~g-~dvi~~a~TGsGKTla~~ 164 (620)
+..+++.+.+++..+. .+ ..+++.|++|+|||...-
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3356666677776543 23 358899999999997543
No 304
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=0.36 Score=52.98 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+...++|||||+|.|.. ..+..++..+...+..-+++|.++
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHhCCCCEEEEEEcC
Confidence 45678999999998742 344555665544322223444444
No 305
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.80 E-value=0.15 Score=58.92 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..++|-|.+++.+ ....++|.|..|||||.+..--+...+..... ..-++|+++-|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i---------~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV---------APWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC---------CHHHeeeeeccHHHHHHHHHHHHH
Confidence 4689999999975 34679999999999999877777666653211 122599999999999999888876
Q ss_pred hhc
Q 007044 210 YGG 212 (620)
Q Consensus 210 ~~~ 212 (620)
+..
T Consensus 72 ~~~ 74 (726)
T TIGR01073 72 LLG 74 (726)
T ss_pred Hhc
Confidence 643
No 306
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.28 Score=53.94 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.3
Q ss_pred cEEEECCCCChhhHHhHHH
Q 007044 148 DLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lp 166 (620)
-+|++||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4799999999999765443
No 307
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.78 E-value=0.65 Score=40.47 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.3
Q ss_pred ccEEEeccchhhhhcC
Q 007044 262 LKFRVLDEADEMLRMG 277 (620)
Q Consensus 262 l~~lVlDEah~~l~~~ 277 (620)
-.+|++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999997654
No 308
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.78 E-value=0.29 Score=49.96 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=43.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH
Q 007044 120 LREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (620)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (620)
-+..|.+.|. +++-|...+.. +..+++++++|+||||||.. +-.++..+.... ..-+++++-.+.|
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~----------~~~ri~tiEd~~E 173 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND----------PTDRVVIIEDTRE 173 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC----------CCceEEEECCchh
Confidence 3455556664 44556666655 44678999999999999964 334444443311 1225788888888
Q ss_pred HH
Q 007044 199 LA 200 (620)
Q Consensus 199 La 200 (620)
|.
T Consensus 174 l~ 175 (299)
T TIGR02782 174 LQ 175 (299)
T ss_pred hc
Confidence 74
No 309
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.75 Score=51.67 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=25.2
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
....+++||||+|.|.. .....+++.+..++..-+++|.+|
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 45678999999999863 234556666655433333444444
No 310
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.71 E-value=0.23 Score=55.27 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
....++|||||+|.|.. .....++..+......-+++|.+|-+.
T Consensus 117 ~g~~kVIIIDEad~Lt~----~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR----EAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred cCCceEEEEEChHhCCH----HHHHHHHHHhhccCCCEEEEEecCChh
Confidence 34568999999998852 334555555543323334555555444
No 311
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.4 Score=55.20 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=14.3
Q ss_pred EEEECCCCChhhHHhHH
Q 007044 149 LVGRARTGQGKTLAFVL 165 (620)
Q Consensus 149 vi~~a~TGsGKTla~~l 165 (620)
+|++||.|+|||.+.-+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999986544
No 312
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=0.22 Score=54.09 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.8
Q ss_pred cEEEECCCCChhhHHhHH
Q 007044 148 DLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~l 165 (620)
.+|++||+|+|||..+-+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999976544
No 313
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=1.3 Score=49.70 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=25.4
Q ss_pred CCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
..++++||||+|.|.... ...+++.+...+..-+++|.+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA----FNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHH----HHHHHHhcccCCCCeEEEEEECCch
Confidence 467899999999886433 3445555544333334445545443
No 314
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.64 E-value=0.73 Score=47.80 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHc--C---CcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 132 LFPIQAMTFDMVLD--G---SDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 132 ~~~~Q~~~i~~il~--g---~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
++|||...+..+.. + +-+++.||.|.||+..+. .+...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~-~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ-HLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH-HHHHHHcC
Confidence 47888888877663 2 468899999999997543 33344443
No 315
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.62 E-value=0.79 Score=47.21 Aligned_cols=41 Identities=20% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
....+++|+||||.|.. +....++..+..++....++|++.
T Consensus 107 ~~~~kviiidead~mt~----~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTE----DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhH----HHHHHHHHHhccCCCCeEEEEEcC
Confidence 36789999999999963 333344444433333455555554
No 316
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.62 E-value=0.88 Score=44.52 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=32.3
Q ss_pred HcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
..|.-+++.+++|+|||....-.+...+.++ .++++++. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-------------~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-------------YSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-------------CcEEEEeC-CCCHHHHHHHHHHh
Confidence 3477899999999999976444444433332 23788874 33334544444443
No 317
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.28 Score=54.70 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=15.7
Q ss_pred CcEEEECCCCChhhHHhHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lp 166 (620)
+-+|++||.|+|||.++.+.
T Consensus 38 HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999765443
No 318
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.54 E-value=0.19 Score=53.25 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
....+++||||+|+|.... . ..+++.+..++..-++++.+|-+.
T Consensus 115 ~~~~kViiIDead~m~~~a-a---naLLk~LEep~~~~~fIL~a~~~~ 158 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-A---NALLKAVEEPPPRTVWLLCAPSPE 158 (394)
T ss_pred cCCcEEEEEechhhcCHHH-H---HHHHHHhhcCCCCCeEEEEECChH
Confidence 3567899999999995332 2 334444433333455666666444
No 319
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.52 E-value=0.16 Score=48.48 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.8
Q ss_pred CcEEEECCCCChhhHHhH
Q 007044 147 SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (620)
.++|+.||+|+|||.+..
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 689999999999998654
No 320
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.50 E-value=0.17 Score=51.51 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=44.2
Q ss_pred CCCCCcHHHHHHHHHHHcCC-cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~-dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
.|..+++-|...+..+..++ +++++|.||||||.. + +.+...-. ..-|++.+--|.||-.+.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--L---Nal~~~i~---------~~eRvItiEDtaELql~~ 216 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--L---NALSGFID---------SDERVITIEDTAELQLAH 216 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--H---HHHHhcCC---------CcccEEEEeehhhhccCC
Confidence 57788999999998887665 999999999999973 2 22222111 111689998888886654
No 321
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.50 E-value=1.3 Score=41.76 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=74.4
Q ss_pred HcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeC
Q 007044 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g 223 (620)
.....+++..++|.|||.+++--++..+..+. +|+|+.=.+--. -+.+...+....++... ..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-------------~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~--~~ 82 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-------------KVGVVQFIKGAW--STGERNLLEFGGGVEFH--VM 82 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC-------------eEEEEEEecCCC--ccCHHHHHhcCCCcEEE--EC
Confidence 35678999999999999988877777776654 366664222110 01122222111123222 22
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcH--HHHHHHHHhccccCCceEEeec
Q 007044 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFS 301 (620)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~--~~l~~il~~~~~~~~~q~ll~S 301 (620)
|..+.-.. ...+--.......+.... ..+.-..+++|||||+=..++.|+. +++..++...|. ..-+|+.-
T Consensus 83 g~~~~~~~----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~--~~evVlTG 155 (191)
T PRK05986 83 GTGFTWET----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG--MQHVVITG 155 (191)
T ss_pred CCCCcccC----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC--CCEEEEEC
Confidence 22111000 000000011111222221 1222356789999999999998854 455566655544 44555554
Q ss_pred CCCChHHHHHHH
Q 007044 302 ATLPSWVKHIST 313 (620)
Q Consensus 302 ATl~~~~~~~~~ 313 (620)
-..|+++..++.
T Consensus 156 R~~p~~Lie~AD 167 (191)
T PRK05986 156 RGAPRELIEAAD 167 (191)
T ss_pred CCCCHHHHHhCc
Confidence 556776665544
No 322
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.48 E-value=0.48 Score=48.47 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=16.6
Q ss_pred CCcEEEECCCCChhhHHhHH
Q 007044 146 GSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~l 165 (620)
++.+++.|++|+|||.....
T Consensus 156 ~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999976543
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.42 E-value=0.4 Score=53.68 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=16.6
Q ss_pred CcEEEECCCCChhhHHhHHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpi 167 (620)
+.+|++||.|+|||..+.+.+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999997654443
No 324
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.34 E-value=0.33 Score=54.54 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=15.2
Q ss_pred EEEECCCCChhhHHhHHHH
Q 007044 149 LVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpi 167 (620)
+|+.|+.|+|||.+.-+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998654443
No 325
>PTZ00293 thymidine kinase; Provisional
Probab=93.32 E-value=0.56 Score=44.86 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=25.0
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEccc
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (620)
|+=-++.||++||||.-.+-.+......+. +++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~-------------kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK-------------KCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC-------------ceEEEEec
Confidence 445678999999999654444443333332 37888885
No 326
>PRK10867 signal recognition particle protein; Provisional
Probab=93.30 E-value=0.69 Score=49.57 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=28.4
Q ss_pred CccEEEeccchhhh-hcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 261 SLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 261 ~l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
.+++||+|=+=++- +......+..+...+.. ..-++.++||........++.|.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p--~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNP--DEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCC--CeEEEEEecccHHHHHHHHHHHH
Confidence 45566666554432 11122334444444432 22366678887777767676665
No 327
>PF13173 AAA_14: AAA domain
Probab=93.30 E-value=0.98 Score=39.59 Aligned_cols=37 Identities=11% Similarity=0.355 Sum_probs=24.2
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
.-.+|++||+|.+- ++...+..+...-+ +.++++ |++
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~---~~~ii~-tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGP---NIKIIL-TGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhcc---CceEEE-Ecc
Confidence 45679999999884 46666777776542 345554 444
No 328
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.30 E-value=0.33 Score=49.97 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHH----cC---CcEEEECCCCChhhHHhHHH
Q 007044 132 LFPIQAMTFDMVL----DG---SDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 132 ~~~~Q~~~i~~il----~g---~dvi~~a~TGsGKTla~~lp 166 (620)
.+|||...+..+. +| +-.++.||.|.||+..+...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~ 44 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRAL 44 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHH
Confidence 4688888777655 33 46889999999999754433
No 329
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.25 E-value=0.023 Score=50.72 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.3
Q ss_pred cEEEECCCCChhhHH
Q 007044 148 DLVGRARTGQGKTLA 162 (620)
Q Consensus 148 dvi~~a~TGsGKTla 162 (620)
+|++.||+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999974
No 330
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.24 E-value=0.16 Score=58.15 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=69.9
Q ss_pred CCchhhhh-hHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEE
Q 007044 344 CSSSARSQ-VIPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (620)
Q Consensus 344 ~~~~~~~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLv 414 (620)
...+.|.. .+..++.....+.+++|.++|+.-|.+.+..+. .+..+||+++..+|..++..+.+|...|+|
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvV 369 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVI 369 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 33444543 333444455567899999999999988877655 467899999999999999999999999999
Q ss_pred eccc-ccccCCCCCccEEEE
Q 007044 415 ATNV-AARGLDINDVQLIIQ 433 (620)
Q Consensus 415 aTdv-~~rGlDi~~v~~VI~ 433 (620)
+|.. +...+.+.++.+||.
T Consensus 370 gT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred chHHHhcccchhcccceEEE
Confidence 9964 445678889999885
No 331
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.24 E-value=0.74 Score=51.07 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=82.8
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCC--CceEEEEeCC
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV--GLTSCCLYGG 224 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~--~~~v~~~~gg 224 (620)
+-.++..|==.|||.... +++..+... ..+.++++++|.+..+..+++++....... +-.+..+.|
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s----------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG- 322 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT----------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG- 322 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh----------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-
Confidence 567888888999998655 666555432 134569999999999999999987654421 111222232
Q ss_pred cchHHHHHHhcCC--CcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecC
Q 007044 225 APYHAQEFKLKKG--IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 225 ~~~~~~~~~l~~~--~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
..+ ...+.++ ..|.+++. -..+...-..++++|+|||+.+-+ +.+..++-.+... ++++|++|.
T Consensus 323 e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~-n~k~I~ISS 388 (738)
T PHA03368 323 ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT-NCKIIFVSS 388 (738)
T ss_pred cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhcc-CccEEEEec
Confidence 111 0011222 24555432 112234445789999999998864 4556666555544 678999998
Q ss_pred CCCh
Q 007044 303 TLPS 306 (620)
Q Consensus 303 Tl~~ 306 (620)
|-..
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8554
No 332
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.23 E-value=0.58 Score=48.86 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.8
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
-+++.||.|+|||.... -+...+..
T Consensus 47 a~L~~G~~G~GKttlA~-~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAF-HLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 58999999999996543 34445544
No 333
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.23 E-value=0.55 Score=50.44 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=24.0
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
.-.+|+|||+|++.. .....++..+.. ..++++.+|-.+
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~---~~iilI~att~n 130 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED---GTITLIGATTEN 130 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc---CcEEEEEeCCCC
Confidence 446899999998852 233445555543 356666676443
No 334
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.19 E-value=0.68 Score=47.51 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHH----cC---CcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVL----DG---SDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 131 ~~~~~Q~~~i~~il----~g---~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.++|||...+..+. .| +-+++.||.|.||+..+. .+...+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~-~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE-LFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHc
Confidence 56788888887755 33 369999999999996443 3333343
No 335
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.18 E-value=0.81 Score=47.28 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHc--C---CcEEEECCCCChhhHHhHHH
Q 007044 132 LFPIQAMTFDMVLD--G---SDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 132 ~~~~Q~~~i~~il~--g---~dvi~~a~TGsGKTla~~lp 166 (620)
.+|||...+..+.. + +-+++.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 36888888877763 2 35899999999999754433
No 336
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.16 E-value=0.74 Score=51.75 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+...++|||||+|.|.. ..+..+++.+...+..-+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 45678999999998853 334445555544333344445444
No 337
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.14 E-value=0.21 Score=46.71 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=29.0
Q ss_pred HcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
-.++++++.|++|+|||..+...+-+.+..+. .+++ +++.+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-------------~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGY-------------SVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---------------EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-------------ceeE-eecCceeccc
Confidence 36789999999999999876555444454332 2555 4566676654
No 338
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.04 E-value=0.6 Score=51.81 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=15.8
Q ss_pred CcEEEECCCCChhhHHhHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lp 166 (620)
+-+|++||.|+|||..+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999765443
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.01 E-value=0.47 Score=43.89 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=36.7
Q ss_pred CCCccEEEeccchhhhhcCcH--HHHHHHHHhccccCCceEEeecCCCChHHHHHHH
Q 007044 259 LSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~--~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~ 313 (620)
-..+++|||||+=..++.|+. +++..++...|. ...+|+..-..|+++..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~--~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPG--HQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC--CCEEEEECCCCCHHHHHhCc
Confidence 356789999999999988854 456666666554 45666666667776666543
No 340
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.97 E-value=1.3 Score=41.15 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=29.2
Q ss_pred CCccEEEeccchhhh-hcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 260 ~~l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
...+++|+|....+. +......+..+...... ..-++.++|+.+......+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~--~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKP--DEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCC--CeEEEEEECCCChHHHHHHHHHH
Confidence 356778899887642 11223333333332222 34566677776665555555554
No 341
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.94 E-value=0.85 Score=43.94 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.0
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.++|++||+|+|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 36999999999999743
No 342
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.94 E-value=0.21 Score=53.41 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHcCCc--EEEECCCCChhhHHhHHHHHHHHhCCC
Q 007044 133 FPIQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNGP 175 (620)
Q Consensus 133 ~~~Q~~~i~~il~g~d--vi~~a~TGsGKTla~~lpil~~l~~~~ 175 (620)
++.|...+..+++... +++.||||||||.. +..+++.+....
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 7888888888776543 88999999999975 455666666543
No 343
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.89 E-value=0.37 Score=49.95 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=24.2
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
-+|+|||+|++-. .+-..++-.+. +-.++++-||--+
T Consensus 106 tiLflDEIHRfnK----~QQD~lLp~vE---~G~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFNK----AQQDALLPHVE---NGTIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcCh----hhhhhhhhhhc---CCeEEEEeccCCC
Confidence 3589999999852 22344444444 3578888898544
No 344
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.84 E-value=0.33 Score=44.65 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
...+++|+|+||.|.. .-...+..++..-+. + -+++|.++-+.
T Consensus 101 ~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~--~-~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE-EAQNALLKTLEEPPE--N-TYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-H-HHHHHHHHHHHSTTT--T-EEEEEEES-GG
T ss_pred CCceEEEeehHhhhhH-HHHHHHHHHhcCCCC--C-EEEEEEECChH
Confidence 5689999999999852 223334444444333 3 34444444333
No 345
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.83 E-value=0.31 Score=54.18 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.3
Q ss_pred cEEEECCCCChhhHHhHHH
Q 007044 148 DLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lp 166 (620)
-+|++|+.|+|||....+.
T Consensus 40 A~LFtGP~GvGKTTLAriL 58 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRIL 58 (700)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999865443
No 346
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.82 E-value=0.36 Score=50.80 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=15.0
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999754
No 347
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.77 E-value=0.21 Score=49.67 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=33.8
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~ 176 (620)
.....|+++++++-+.+.+... ..=++|.||||||||.+ +..++.+++....
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 4445677777776655532211 12289999999999976 4467788877543
No 348
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.71 E-value=0.54 Score=52.84 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.1
Q ss_pred CcEEEECCCCChhhHHhHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lp 166 (620)
+.+|++|+.|+|||....+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45899999999999865443
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.65 E-value=0.32 Score=50.37 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
+..+++++++|+||||||.. +-.++..+... -+++++=-+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~-------------~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPAI-------------ERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCCC-------------CeEEEecCCCcccc
Confidence 34689999999999999963 33444444322 24666656666543
No 350
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.62 E-value=0.19 Score=52.09 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
+..+++++++|+||||||.. +-.++..+... .+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~-------------~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQ-------------ERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCCC-------------CCEEEECCCcccc
Confidence 44789999999999999963 33344333221 2477777887774
No 351
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.52 E-value=0.9 Score=50.52 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCccEEEeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCCChHH
Q 007044 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl~~~~ 308 (620)
+.++++||||++|.+.... ....+-.++..+... +.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-NKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc-CCCEEEecCCChHhh
Confidence 4457889999999885432 234555666665442 346666555444433
No 352
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.50 E-value=0.64 Score=53.24 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=27.7
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHH
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~ 314 (620)
...++||||+|++.. .....++..+. ..++++.+||-++....+...
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 346899999998852 22233444443 246778888865544444333
No 353
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.48 E-value=0.87 Score=47.83 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=17.5
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
+-+++.||.|+||+..+. .+...+.
T Consensus 42 HA~Lf~Gp~G~GK~~lA~-~~A~~Ll 66 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAY-RMARFLL 66 (365)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHh
Confidence 358999999999996543 3344444
No 354
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.37 E-value=0.34 Score=50.23 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHH----cC---CcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVL----DG---SDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 131 ~~~~~Q~~~i~~il----~g---~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.++|||...+..+. +| +-.++.||.|.||+..+.. +...+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHc
Confidence 35788888887765 33 4688999999999965433 333443
No 355
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.28 E-value=0.93 Score=50.06 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=15.5
Q ss_pred cEEEECCCCChhhHHhHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpi 167 (620)
-+|++||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998654433
No 356
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=1.1 Score=50.03 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=15.9
Q ss_pred cEEEECCCCChhhHHhHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpi 167 (620)
-+|++||.|+|||.++.+.+
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765543
No 357
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.19 E-value=0.97 Score=44.46 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=20.8
Q ss_pred HcCCcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
..|.-+++.|++|+|||...+--+.+.+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 356678999999999996544444444443
No 358
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.19 E-value=1.3 Score=41.66 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=24.1
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
....+++||||+|.|.. .....++..+...+..-.++|.++
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEEEC
Confidence 45678999999999853 233445555544333334444444
No 359
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.18 E-value=0.84 Score=48.14 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=34.2
Q ss_pred CccEEEeccchhhhhc-CcHHHHHHHHHhccccCCceEEeecCCCChHHH
Q 007044 261 SLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVK 309 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~-~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~ 309 (620)
+++++++|.++.+... ...+.+-.++..+.... .|+++.|-..|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~-kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG-KQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC-CEEEEEcCCCchhhc
Confidence 7889999999987644 34566667777776543 378877777776544
No 360
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.15 E-value=3.9 Score=44.38 Aligned_cols=98 Identities=21% Similarity=0.300 Sum_probs=75.7
Q ss_pred CCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH
Q 007044 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233 (620)
Q Consensus 154 ~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 233 (620)
-.+.||+..-++.+.+.+..+ -.|-+||.+-+.+-|.|++.++. .+.++++..++|..+.......
T Consensus 365 lvF~gse~~K~lA~rq~v~~g-----------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG-----------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred heeeecchhHHHHHHHHHhcc-----------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHH
Confidence 357888888788888877765 34558999999999999999987 3467899999998766554433
Q ss_pred h---c-CCCcEEEeChHHHHHHHhcCCccCCCccEEEeccch
Q 007044 234 L---K-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (620)
Q Consensus 234 l---~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah 271 (620)
+ + ....++||| ++|.+| +++.++.+||-+..-
T Consensus 431 ~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 431 MERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred HHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 3 2 357899999 677776 789999999987544
No 361
>PRK04195 replication factor C large subunit; Provisional
Probab=92.11 E-value=0.89 Score=49.87 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 362
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.09 E-value=0.71 Score=49.94 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=33.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
.|.-+++.|++|+|||...+..+.+....+ .+++|++- .+-..|+......++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g-------------~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG-------------GKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEEc-cccHHHHHHHHHHcC
Confidence 356789999999999975444433333222 24788874 456667766665554
No 363
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.09 E-value=0.34 Score=55.37 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=68.4
Q ss_pred CchhhhhhHHHHH-HhcCCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcCCceEEEeccc
Q 007044 345 SSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (620)
Q Consensus 345 ~~~~~~~~l~~ll-~~~~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv 418 (620)
..+.|......++ .....+.++||.++++.-+.++...|. .+..+||+++..+|...+.+...|..+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 3445555443333 334457799999999999988887775 4668999999999999999999999999999974
Q ss_pred ccccCCCCCccEEEEcC
Q 007044 419 AARGLDINDVQLIIQCE 435 (620)
Q Consensus 419 ~~rGlDi~~v~~VI~~d 435 (620)
+.. +.+.++.+||.-+
T Consensus 251 al~-~p~~~l~liVvDE 266 (679)
T PRK05580 251 ALF-LPFKNLGLIIVDE 266 (679)
T ss_pred Hhc-ccccCCCEEEEEC
Confidence 432 5677888888644
No 364
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.88 E-value=0.23 Score=54.49 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
.+|+.||.+.+..+. .|+--|.-+|||||||+..+-..+..|
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 478999998886654 789999999999999997665555544
No 365
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.74 Score=50.16 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCccEEEeccchhhhhc-------CcHHHHHHHHHhcccc-CCceEEeecCCCCh
Q 007044 260 SSLKFRVLDEADEMLRM-------GFVEDVELILGKVEDA-NKVQTLLFSATLPS 306 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~-------~f~~~l~~il~~~~~~-~~~q~ll~SATl~~ 306 (620)
+.-.+|.|||.|.|... .-..-+..++..+... ...++.++-||-.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP 657 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP 657 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC
Confidence 34567899999998621 1233455555555432 24577888999554
No 366
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.78 E-value=1.3 Score=47.97 Aligned_cols=147 Identities=14% Similarity=0.049 Sum_probs=86.2
Q ss_pred CCCcHHHHHHHHHHHc------C----CcEEEECCCCChhhHHhH-HHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH
Q 007044 130 ESLFPIQAMTFDMVLD------G----SDLVGRARTGQGKTLAFV-LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~------g----~dvi~~a~TGsGKTla~~-lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (620)
..+-|+|.=.+-.++. | +-.++.-|-+-|||...+ +.....+.... .+-...|++|+.+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~----------~~~~~~i~A~s~~ 129 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR----------SGAGIYILAPSVE 129 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh----------cCCcEEEEeccHH
Confidence 4677999999988872 2 357788888899996543 44444443331 3345899999999
Q ss_pred HHHHHHHHHHHhhcCCC-ceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH---HHHHhc--CCccCCCccEEEeccchh
Q 007044 199 LAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI---KDHIER--GNIDLSSLKFRVLDEADE 272 (620)
Q Consensus 199 La~Qv~~~~~~~~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl---~~~l~~--~~~~l~~l~~lVlDEah~ 272 (620)
-+.+....++....... +. .......+....+.+.. +..+.. +..+-.+..+.|+||.|.
T Consensus 130 qa~~~F~~ar~mv~~~~~l~--------------~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~ 195 (546)
T COG4626 130 QAANSFNPARDMVKRDDDLR--------------DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHL 195 (546)
T ss_pred HHHHhhHHHHHHHHhCcchh--------------hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhh
Confidence 99999888875443221 10 00111122222222222 222222 344555678999999998
Q ss_pred hhhcCcHHHHHHHHHhccccCCceEEeecC
Q 007044 273 MLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 273 ~l~~~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
..+.+ ..+..+..-+...++.+++..|-
T Consensus 196 f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 196 FGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred hcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 76553 44555555554444566666654
No 367
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.2 Score=52.07 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=19.3
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
...|+|+.+|||||||+.. --|.++..
T Consensus 225 eKSNvLllGPtGsGKTlla--qTLAr~ld 251 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLA--QTLARVLD 251 (564)
T ss_pred ecccEEEECCCCCchhHHH--HHHHHHhC
Confidence 3468999999999999843 33444444
No 368
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.74 E-value=1.6 Score=49.03 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred cEEEECCCCChhhHHhHH
Q 007044 148 DLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~l 165 (620)
-+|++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999986544
No 369
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.74 E-value=0.23 Score=54.29 Aligned_cols=50 Identities=30% Similarity=0.356 Sum_probs=39.0
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
.++++.||||||||..|++|.+-.. .. .++|+=|--||....+..+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~--~~-------------s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY--PG-------------SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc--cC-------------CEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999976322 11 28999999999887777666543
No 370
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.63 E-value=2.2 Score=43.81 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=14.5
Q ss_pred cEEEECCCCChhhHHhH
Q 007044 148 DLVGRARTGQGKTLAFV 164 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (620)
.+++.||+|+|||.+.-
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997543
No 371
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.62 E-value=1.4 Score=49.08 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=26.0
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
....+++|+||+|.|.. .....++..+..++..-+++|.+|-
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccCCCCEEEEEecCC
Confidence 45678999999998853 2344555555544344444454443
No 372
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.59 E-value=2 Score=44.20 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=62.2
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCC---CcccCCCCCCCeEEEEcccHHHHHH-H-HHHHHHhhcCCCceEEEE
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTK---ASKKTGYGRAPSVLVLLPTRELAKQ-V-HEDFDVYGGAVGLTSCCL 221 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~---~~~~~~~~~~~~~Lil~PtreLa~Q-v-~~~~~~~~~~~~~~v~~~ 221 (620)
+-.++.||.|+||+..+ ..+...+...... ..........|-.+++.|+...-.+ + ..++..
T Consensus 27 ha~Lf~G~~G~Gk~~~A-~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~------------ 93 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAA-LCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEE------------ 93 (314)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhh------------
Confidence 56999999999999654 3344444432210 0011223455666777775211000 0 000000
Q ss_pred eCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeec
Q 007044 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301 (620)
Q Consensus 222 ~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~S 301 (620)
.|. .-+..+.|-|-....+.+.+....+ ....+++|+|+||.|.. .....+++.+..+++..+++.|
T Consensus 94 -~~~-------~~~~~~~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~----~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 94 -AGL-------KRKAPPQIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred -ccc-------cccccccCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCH----HHHHHHHHHHhCCCCCeEEEEE
Confidence 000 0011234444444455555554443 35789999999999853 2334444444443334344433
No 373
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.58 E-value=0.39 Score=52.80 Aligned_cols=87 Identities=17% Similarity=0.302 Sum_probs=66.5
Q ss_pred hhhhhhHHHHH-HhcCCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcCCceEEEeccccc
Q 007044 347 SARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (620)
Q Consensus 347 ~~~~~~l~~ll-~~~~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~ 420 (620)
+.|..+...++ .....++++||.+++..-+.++...|. .+..+||+++..+|.+...+..+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 44554443333 334467799999999998888877775 467899999999999999999999999999997544
Q ss_pred ccCCCCCccEEEEc
Q 007044 421 RGLDINDVQLIIQC 434 (620)
Q Consensus 421 rGlDi~~v~~VI~~ 434 (620)
. +.++++.+||.-
T Consensus 88 f-~p~~~l~lIIVD 100 (505)
T TIGR00595 88 F-LPFKNLGLIIVD 100 (505)
T ss_pred c-CcccCCCEEEEE
Confidence 3 567788888753
No 374
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.41 E-value=0.5 Score=46.99 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=35.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
++.++++.|++|+|||..+..-..+.+..+ . -++.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g-------------~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAG-------------I-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcC-------------C-eEEEEEHHHHHHHHHHHHh
Confidence 678999999999999986554444434222 2 3666688899998877664
No 375
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.40 E-value=0.32 Score=47.84 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=38.0
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
.|..+++.|++|+|||....-.+.+.+..+. .++|++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------------~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------cEEEEE-eeCCHHHHHHHHHHhC
Confidence 3577999999999999866655666665443 278887 5567777777776654
No 376
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.28 E-value=1.6 Score=42.54 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=31.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.|..+++.|++|+|||......+.+.+..+. .+++++- .+.+.++.+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~-------------~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD-------------PVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC-------------eEEEEEc-cCCHHHHHHHHHHh
Confidence 4678999999999999755444444444322 2666663 33444554444433
No 377
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.22 E-value=0.14 Score=54.38 Aligned_cols=48 Identities=31% Similarity=0.321 Sum_probs=37.1
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
++++.|+||||||.++++|-+.... ..++|+=|--|+....+...+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~---------------~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP---------------GSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC---------------CCEEEEccchhHHHHHHHHHHHc
Confidence 4789999999999999998764321 12899999999998777666543
No 378
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.18 E-value=1 Score=50.80 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.0
Q ss_pred CcEEEECCCCChhhHHhHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lp 166 (620)
+.+|+.||.|+|||.++...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 45799999999999865443
No 379
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.46 Score=52.76 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=36.4
Q ss_pred EeCCcchHHHHHHhcCCCcEEEeC-hHHHHHHHhcC-CccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 221 LYGGAPYHAQEFKLKKGIDVVIGT-PGRIKDHIERG-NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 221 ~~gg~~~~~~~~~l~~~~~IlV~T-p~rl~~~l~~~-~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
-.||.....+++.-+ .-.||. ||+++.-|.+- ..+ -+++|||.|.|...-.++--..++.-+
T Consensus 382 sLGGvrDEAEIRGHR---RTYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 382 SLGGVRDEAEIRGHR---RTYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred ecCccccHHHhcccc---ccccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 347765555443332 344444 99999998763 222 268999999996443333334444433
No 380
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=91.14 E-value=0.39 Score=56.49 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=68.4
Q ss_pred Cchhhhhh-HHHHHHhcCCCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEe
Q 007044 345 SSSARSQV-IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (620)
Q Consensus 345 ~~~~~~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLva 415 (620)
..+.|..+ +..++.....+.+++|.++|..-|.+.+..+. .+..++|..+..++..+++.+..|+.+|+|+
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIG 560 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIG 560 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEc
Confidence 34444433 23334444467899999999999998877655 3556899999999999999999999999999
Q ss_pred cc-cccccCCCCCccEEEE
Q 007044 416 TN-VAARGLDINDVQLIIQ 433 (620)
Q Consensus 416 Td-v~~rGlDi~~v~~VI~ 433 (620)
|. .+...+.+.++.+||.
T Consensus 561 Tp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 561 THKLLQKDVKFKDLGLLII 579 (926)
T ss_pred hHHHhhCCCCcccCCEEEe
Confidence 96 4556788889998885
No 381
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.13 E-value=2.8 Score=42.72 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=69.8
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc--cHHHHHHHHHHHHHhhcCCCceEEEE-eCC
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP--TRELAKQVHEDFDVYGGAVGLTSCCL-YGG 224 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P--treLa~Qv~~~~~~~~~~~~~~v~~~-~gg 224 (620)
-+++.|-.|+|||.+..=-+......+. ++++.+- -|+-|.. ++..|+...|+.+..- +|+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~-------------~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~ 204 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGK-------------SVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGA 204 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCC-------------eEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCC
Confidence 3788999999999875443333333322 3555543 3454443 3444444456665542 343
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhh-cCcHHHHHHHHHhccccC---CceEEe-
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDAN---KVQTLL- 299 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~---~~q~ll- 299 (620)
.+... ..|.+++. .-+++++|++|=|-||-+ .+..+.++.|.+-+.+.. +..+++
T Consensus 205 DpAaV------------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv 264 (340)
T COG0552 205 DPAAV------------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV 264 (340)
T ss_pred CcHHH------------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE
Confidence 33221 12222211 133455566666665533 234556666665554311 123444
Q ss_pred ecCCCChHHHHHHHHhc
Q 007044 300 FSATLPSWVKHISTKFL 316 (620)
Q Consensus 300 ~SATl~~~~~~~~~~~~ 316 (620)
+=||..+....-++.|.
T Consensus 265 lDAttGqnal~QAk~F~ 281 (340)
T COG0552 265 LDATTGQNALSQAKIFN 281 (340)
T ss_pred EEcccChhHHHHHHHHH
Confidence 48999988777777774
No 382
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.11 E-value=0.8 Score=51.97 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=25.7
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
....+++|+||||.|.. .....++..+..++..-+++|.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~----~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK----SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCH----HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 35778999999998853 234455555544333334444445333
No 383
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.11 E-value=1.7 Score=52.52 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.+++|++|+++-+..+++.+..... ++++.+++|+++.......+ ....+|+|||. .+.+ .+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iier-GIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET-GIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhc-ccccccC
Confidence 44799999999999999998887653 46788899998876544433 24699999993 4444 5789999
Q ss_pred cEEEeccchhh
Q 007044 263 KFRVLDEADEM 273 (620)
Q Consensus 263 ~~lVlDEah~~ 273 (620)
++||++.+|++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999854
No 384
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=91.10 E-value=0.34 Score=55.03 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=68.8
Q ss_pred Cchhhhhh-HHHHHHhcCCCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEe
Q 007044 345 SSSARSQV-IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (620)
Q Consensus 345 ~~~~~~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLva 415 (620)
..+.|..+ +..++.....+.+++|.++|+.-|.+.+..+. .+..+||+++..+|..+++...+|+..|+|+
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVg 344 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVG 344 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEe
Confidence 34444432 34445555567899999999999888776554 4677999999999999999999999999999
Q ss_pred cccc-cccCCCCCccEEEE
Q 007044 416 TNVA-ARGLDINDVQLIIQ 433 (620)
Q Consensus 416 Tdv~-~rGlDi~~v~~VI~ 433 (620)
|..+ ...+.+.++.+||.
T Consensus 345 T~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 345 THALIQEKVEFKRLALVII 363 (630)
T ss_pred cHHHHhccccccccceEEE
Confidence 9644 45678888988885
No 385
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=1.1 Score=48.99 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=23.9
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
....+++|+||||.|.... ...++..+..++...+++|.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a----~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEA----FNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHH----HHHHHHHHhcCCCCeEEEEEEC
Confidence 4567899999999885332 3444555544333344444444
No 386
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.95 E-value=2 Score=40.01 Aligned_cols=142 Identities=19% Similarity=0.257 Sum_probs=71.2
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH-HHHHHHHHhhcCCCceEEEEeCCcch
Q 007044 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK-QVHEDFDVYGGAVGLTSCCLYGGAPY 227 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~-Qv~~~~~~~~~~~~~~v~~~~gg~~~ 227 (620)
++|.-..|-|||.|++--++..+..+. +++|+.=-+-=.. --...+..+. .++....+--|...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~-------------rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw 95 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGL-------------RVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTW 95 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCC-------------EEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeC
Confidence 677788889999988877777776553 4666641110000 0001122221 11111111111111
Q ss_pred HHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCc--HHHHHHHHHhccccCCceEEeecC-CC
Q 007044 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSA-TL 304 (620)
Q Consensus 228 ~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f--~~~l~~il~~~~~~~~~q~ll~SA-Tl 304 (620)
..+.+. .++ ..+...+.+... .+.-..+++|||||.-.++..|+ .+++..++..-|. -+.++++. ..
T Consensus 96 ~~~~~~----~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~---~~~vIiTGr~a 165 (198)
T COG2109 96 ETQDRE----ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPE---HTHVIITGRGA 165 (198)
T ss_pred CCcCcH----HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCC---CcEEEEECCCC
Confidence 111000 122 333333333221 12233678999999999998885 3455555554444 45555555 47
Q ss_pred ChHHHHHHHHh
Q 007044 305 PSWVKHISTKF 315 (620)
Q Consensus 305 ~~~~~~~~~~~ 315 (620)
|+.+.+++...
T Consensus 166 p~~lie~ADlV 176 (198)
T COG2109 166 PPELIELADLV 176 (198)
T ss_pred CHHHHHHHHHH
Confidence 77776666543
No 387
>PHA00729 NTP-binding motif containing protein
Probab=90.87 E-value=2.2 Score=41.32 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=14.0
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999643
No 388
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.85 E-value=0.26 Score=54.77 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=91.8
Q ss_pred CCCCcHHHHHHHHHHHcCC----------cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH
Q 007044 129 IESLFPIQAMTFDMVLDGS----------DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~----------dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (620)
...+...|.+++-.+.+.+ -.++-...|-||--+.+-.|++..+++++ ++|.++-+..
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK------------rAlW~SVSsD 329 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK------------RALWFSVSSD 329 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc------------eeEEEEeccc
Confidence 3456778888886654322 24444445555544434445666666544 4899998888
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH--hcCCCcEEEeChHHHHHHHhcCC------------ccCCC-cc
Q 007044 199 LAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK--LKKGIDVVIGTPGRIKDHIERGN------------IDLSS-LK 263 (620)
Q Consensus 199 La~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~--l~~~~~IlV~Tp~rl~~~l~~~~------------~~l~~-l~ 263 (620)
|-....+.+..++. +++.|..+.-- .|..-... -.-.--|+++|+..|+-.-.... |.-.+ =.
T Consensus 330 LKfDAERDL~DigA-~~I~V~alnK~-KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feG 407 (1300)
T KOG1513|consen 330 LKFDAERDLRDIGA-TGIAVHALNKF-KYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEG 407 (1300)
T ss_pred cccchhhchhhcCC-CCccceehhhc-ccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccce
Confidence 88877777877754 45666554210 00000000 00123599999887765432110 00011 25
Q ss_pred EEEeccchhhhhc---------CcHHHHHHHHHhccccCCceEEeecCC
Q 007044 264 FRVLDEADEMLRM---------GFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 264 ~lVlDEah~~l~~---------~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
+|||||||.--+. .-+..+..+-+.+|. .+++.-|||
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~---ARVVYASAT 453 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPN---ARVVYASAT 453 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCC---ceEEEeecc
Confidence 7999999996541 134566667777764 689999999
No 389
>PRK06904 replicative DNA helicase; Validated
Probab=90.82 E-value=2.9 Score=45.57 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=56.3
Q ss_pred HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEE-
Q 007044 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL- 221 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~- 221 (620)
+..|.=+|+.|.||.|||. |++-++..+... .+..+++++. -.-..|+...+-... .++....+
T Consensus 218 l~~G~LiiIaarPg~GKTa-falnia~~~a~~-----------~g~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~ 282 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTT-FAMNLCENAAMA-----------SEKPVLVFSL-EMPAEQIMMRMLASL--SRVDQTKIR 282 (472)
T ss_pred cCCCcEEEEEeCCCCChHH-HHHHHHHHHHHh-----------cCCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHHhc
Confidence 3345557889999999996 445444433211 0112666653 244455554443222 22222222
Q ss_pred eC-CcchHHHH------HHhcCCCcEEEe-----ChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 222 YG-GAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 222 ~g-g~~~~~~~------~~l~~~~~IlV~-----Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
.| ..+...+. ..+...+++.|- |+..+...+.+-......+++||||=.+.|.
T Consensus 283 ~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 283 TGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 22 22222221 122234556663 4555544333211112357899999888774
No 390
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.65 E-value=1.8 Score=46.52 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil 168 (620)
|+.+.++-=-..+.-+..|.=+++.|+||+|||.. ++-++
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~-al~ia 215 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTL-ALNIA 215 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHH-HHHHH
Confidence 34444443333333344566788999999999964 44444
No 391
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.62 E-value=1.1 Score=49.60 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.3
Q ss_pred cEEEECCCCChhhHHhHHH
Q 007044 148 DLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lp 166 (620)
-+|+.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999865443
No 392
>PRK10436 hypothetical protein; Provisional
Probab=90.50 E-value=1.2 Score=48.36 Aligned_cols=47 Identities=28% Similarity=0.445 Sum_probs=30.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHH--cCCcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 123 KLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il--~g~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
.|.+.|+ .+.|.+.+..++ .+.-++++||||||||... ..++..+..
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 3455564 566777776655 3456899999999999854 345555543
No 393
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.30 E-value=1.5 Score=46.16 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=50.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.|.-+++.|++|+|||...+..+.+....+ .+++|+.-. +-..|+.....+++-. ..-..++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g-------------~~VlYvs~E-Es~~qi~~Ra~rlg~~--~~~l~l~~e 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-------------GKVLYVSGE-ESPEQIKLRADRLGIS--TENLYLLAE 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEECC-cCHHHHHHHHHHcCCC--cccEEEEcc
Confidence 356789999999999975444333322221 237888654 4456666555554311 110111111
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
...+.+.+.+.. .+.++||+|+++.+.
T Consensus 145 ------------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ------------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ------------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 112344444432 356889999999875
No 394
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=1.7 Score=48.91 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=25.2
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
....+++||||+|.|.. .....++..+..++..-+++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 56788999999998853 234445555544333344555555
No 395
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.18 E-value=0.4 Score=46.72 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=67.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhC-CCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCC-------Cc
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-------GL 216 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~-~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-------~~ 216 (620)
.|..+++.|++|||||.-..-.+.+.+.+ +.. +++++ +.+-..++.+.+..++-.. .+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~-------------vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l 83 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEK-------------VLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKL 83 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------------EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCc-------------EEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCE
Confidence 45789999999999998666666666665 433 77777 4455667766666553210 01
Q ss_pred eEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhc----CcHHHHHHHHHhcccc
Q 007044 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM----GFVEDVELILGKVEDA 292 (620)
Q Consensus 217 ~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~----~f~~~l~~il~~~~~~ 292 (620)
.+...+.... . .. -..+..+...+..- +.-.+.+.+|+|-...+... .+...+..+...+..
T Consensus 84 ~~~d~~~~~~--~--------~~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~- 149 (226)
T PF06745_consen 84 KIIDAFPERI--G--------WS--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS- 149 (226)
T ss_dssp EEEESSGGGS--T---------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH-
T ss_pred EEEecccccc--c--------cc--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH-
Confidence 1111111000 0 00 12333444433321 11112278999988887221 245556666666654
Q ss_pred CCceEEeecCC
Q 007044 293 NKVQTLLFSAT 303 (620)
Q Consensus 293 ~~~q~ll~SAT 303 (620)
.-.+.+|++.
T Consensus 150 -~~~t~llt~~ 159 (226)
T PF06745_consen 150 -RGVTTLLTSE 159 (226)
T ss_dssp -TTEEEEEEEE
T ss_pred -CCCEEEEEEc
Confidence 2345556555
No 396
>PRK05973 replicative DNA helicase; Provisional
Probab=90.18 E-value=0.53 Score=46.09 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 142 ~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
-+..|.-+++.|++|+|||...+-.+.+.+.++. +++|++- -+-..|+.+.+..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge-------------~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR-------------TGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEEE-eCCHHHHHHHHHHc
Confidence 3445677999999999999766555555554432 3777753 34456777777655
No 397
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.11 E-value=0.28 Score=54.79 Aligned_cols=49 Identities=27% Similarity=0.147 Sum_probs=40.3
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++++.||||||||..|++|-+..... .++|+=|--|+....+...++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~---------------S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWED---------------SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCC---------------CEEEEeCcHHHHHHHHHHHHHC
Confidence 579999999999999999998765321 2899999999998888777654
No 398
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.11 E-value=1 Score=46.19 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=19.7
Q ss_pred HHHHHHcCCcEEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
.+-.+..++++++.|++|+|||...
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHHH
Confidence 3344556889999999999999743
No 399
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.05 E-value=0.74 Score=43.39 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=28.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHh
Q 007044 124 LKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~ 163 (620)
|.+.|+ .++-|...+.... .|..+++.|+||||||..+
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 334443 4666777776644 6889999999999999753
No 400
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.02 E-value=1.7 Score=47.82 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.6
Q ss_pred cEEEECCCCChhhHHhHH
Q 007044 148 DLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~l 165 (620)
-.|++||.|+|||.++..
T Consensus 38 ayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARI 55 (535)
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 358999999999976544
No 401
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.97 E-value=0.2 Score=46.76 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHhcCCCcEEEeChHHHHHHHhcCCcc--CCCccEEEeccchhhhh
Q 007044 232 FKLKKGIDVVIGTPGRIKDHIERGNID--LSSLKFRVLDEADEMLR 275 (620)
Q Consensus 232 ~~l~~~~~IlV~Tp~rl~~~l~~~~~~--l~~l~~lVlDEah~~l~ 275 (620)
+.....+||||+++..|++-..+..+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444556999999999998765443322 23447899999998864
No 402
>PF05729 NACHT: NACHT domain
Probab=89.88 E-value=2.5 Score=38.37 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=18.0
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCC
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNG 174 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~ 174 (620)
-+++.|+.|+|||... .-++..+...
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHhc
Confidence 3789999999999754 3444444443
No 403
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=89.75 E-value=5.4 Score=36.95 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=62.4
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchH
Q 007044 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~ 228 (620)
+.+....|=|||.|++--++..+..+. +|+|+.=.+- ..-+.+...+....++.... .|..+.
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~-------------rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~--~g~~f~ 68 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGM-------------RVLIVQFLKG--GRYSGELKALKKLPNVEIER--FGKGFV 68 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT---------------EEEEESS----SS--HHHHHHGGGT--EEEE----TT--
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCC-------------EEEEEEEecC--CCCcCHHHHHHhCCeEEEEE--cCCccc
Confidence 556677899999988877777776554 4777753332 11123333332222233221 111111
Q ss_pred HHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcH--HHHHHHHHhccccCCceEEeecCCCCh
Q 007044 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 229 ~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~--~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
.+..... .+ .......++... ..+.-..+++|||||+=..++.|+. +++..++...|. ..-+|+.--..|+
T Consensus 69 ~~~~~~~--~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~--~~evVlTGR~~~~ 141 (172)
T PF02572_consen 69 WRMNEEE--ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE--SLEVVLTGRNAPE 141 (172)
T ss_dssp --GGGHH--HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T--T-EEEEE-SS--H
T ss_pred ccCCCcH--HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC--CeEEEEECCCCCH
Confidence 1000000 00 001111122211 1233456889999999999998864 445566665444 4555655555677
Q ss_pred HHHHHH
Q 007044 307 WVKHIS 312 (620)
Q Consensus 307 ~~~~~~ 312 (620)
++...+
T Consensus 142 ~l~e~A 147 (172)
T PF02572_consen 142 ELIEAA 147 (172)
T ss_dssp HHHHH-
T ss_pred HHHHhC
Confidence 666554
No 404
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=0.67 Score=47.97 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.7
Q ss_pred CcEEEECCCCChhhHH
Q 007044 147 SDLVGRARTGQGKTLA 162 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla 162 (620)
+|++..+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999974
No 405
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=89.74 E-value=7.4 Score=43.23 Aligned_cols=134 Identities=22% Similarity=0.202 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHcC-------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 133 FPIQAMTFDMVLDG-------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 133 ~~~Q~~~i~~il~g-------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
|--|..++-.+... --+-+.|.-|-||+.|..+.+..++..+-.+ +.|.+|.-+-..-+++
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gysn------------IyvtSPspeNlkTlFe 322 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSN------------IYVTSPSPENLKTLFE 322 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcce------------EEEcCCChHHHHHHHH
Confidence 55688887665432 3466889999999999999999998876442 7888898776666655
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHh-----------------cCCccCCCccEEEec
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE-----------------RGNIDLSSLKFRVLD 268 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~-----------------~~~~~l~~l~~lVlD 268 (620)
.+-+=+..+++.-.. .++||-.|..-+...+- .....+...+++|+|
T Consensus 323 Fv~kGfDaL~Yqeh~----------------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVID 386 (1011)
T KOG2036|consen 323 FVFKGFDALEYQEHV----------------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVID 386 (1011)
T ss_pred HHHcchhhhcchhhc----------------chhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEec
Confidence 432211111111000 12222222222211111 122346778999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 269 Eah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
||-.+- .+-+..++ .+..++|+.|+.
T Consensus 387 EAAAIP----Lplvk~Li-------gPylVfmaSTin 412 (1011)
T KOG2036|consen 387 EAAAIP----LPLVKKLI-------GPYLVFMASTIN 412 (1011)
T ss_pred hhhcCC----HHHHHHhh-------cceeEEEeeccc
Confidence 998764 33333333 357888988864
No 406
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.71 E-value=0.85 Score=47.41 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH
Q 007044 120 LREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (620)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (620)
-+..|.+.|+ +++.+...+..+. .+.+++++++||||||..+ -.++..+... .+.+++--+.|
T Consensus 153 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~-------------~riv~iEd~~E 216 (340)
T TIGR03819 153 TLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPD-------------ERIVLVEDAAE 216 (340)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCC-------------CcEEEECCcce
Confidence 3455666676 3456667666544 6689999999999999743 2233322221 23677777777
Q ss_pred HH
Q 007044 199 LA 200 (620)
Q Consensus 199 La 200 (620)
|.
T Consensus 217 l~ 218 (340)
T TIGR03819 217 LR 218 (340)
T ss_pred ec
Confidence 63
No 407
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=89.67 E-value=1.4 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=18.1
Q ss_pred HcCCcEEEECCCCChhhHHhH
Q 007044 144 LDGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~ 164 (620)
-.|..|++.|+||+||++.+.
T Consensus 99 p~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred CCCCcEEEecCCCccHHHHHH
Confidence 378999999999999998653
No 408
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=89.66 E-value=1.2 Score=44.50 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=39.0
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhcccc-----CCceEEeecCCCChHHHHHHHHhcc
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLK 317 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~-----~~~q~ll~SATl~~~~~~~~~~~~~ 317 (620)
.++|+||+|.| ..|..+.+.-.+.+-+.. .+.-.|++|-+-...+..++-.+.+
T Consensus 180 slFIFDE~DKm-p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 180 SLFIFDEVDKL-PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred ceEEechhhhc-CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 56999999998 566677777777654432 2456788998888877777766654
No 409
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.63 E-value=0.97 Score=51.33 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=72.2
Q ss_pred EeCCchhhhhhHHHHHH-hcCCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcCCceEEEe
Q 007044 342 LPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (620)
Q Consensus 342 ~~~~~~~~~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLva 415 (620)
.-+..+.|.+++..++. .+..|..+||.++.+.....+...|. .+..+|+++++.+|.....+.++|+.+|+|.
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 34556777777766665 44577899999999888877777766 7889999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEE
Q 007044 416 TNVAARGLDINDVQLIIQ 433 (620)
Q Consensus 416 Tdv~~rGlDi~~v~~VI~ 433 (620)
|-.+ --.-+++..++|.
T Consensus 303 tRSA-lF~Pf~~LGLIIv 319 (730)
T COG1198 303 TRSA-LFLPFKNLGLIIV 319 (730)
T ss_pred echh-hcCchhhccEEEE
Confidence 9653 3356667777664
No 410
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=4.7 Score=43.43 Aligned_cols=69 Identities=23% Similarity=0.213 Sum_probs=46.0
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHHHHHH----HHcC--------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcc
Q 007044 113 RFRISVPLREKLKSKGIESLFPIQAMTFDM----VLDG--------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180 (620)
Q Consensus 113 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~----il~g--------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~ 180 (620)
.||.+.+-++.....|+..-.|.=.+.+.. +.+- ..+++.+|.|||||..++-.++ .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~---~-------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL---S-------- 561 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh---h--------
Confidence 489999999998888887666654444432 1111 3699999999999964432222 1
Q ss_pred cCCCCCCCeEEEEccc
Q 007044 181 KTGYGRAPSVLVLLPT 196 (620)
Q Consensus 181 ~~~~~~~~~~Lil~Pt 196 (620)
...|.+=|++|.
T Consensus 562 ----S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 ----SDFPFVKIISPE 573 (744)
T ss_pred ----cCCCeEEEeChH
Confidence 245667788875
No 411
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.48 E-value=5.4 Score=41.81 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=61.5
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCc
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~ 225 (620)
.+.+.+.|+.|.|||... -++-....... +.| ++--+-...++..+..+. |+.
T Consensus 62 ~~GlYl~G~vG~GKT~Lm--d~f~~~lp~~~----------k~R----~HFh~Fm~~vh~~l~~~~-----------~~~ 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM--DLFYDSLPIKR----------KRR----VHFHEFMLDVHSRLHQLR-----------GQD 114 (362)
T ss_pred CceEEEECCCCCchhHHH--HHHHHhCCccc----------ccc----ccccHHHHHHHHHHHHHh-----------CCC
Confidence 467999999999999843 33322222211 111 134467777777776653 111
Q ss_pred chHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
..- ..+.+.+ .....+|++||.|-- |.+-.--+..++..+-.. ..-++..|-+.|
T Consensus 115 ~~l-----------------~~va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~-gvvlVaTSN~~P 169 (362)
T PF03969_consen 115 DPL-----------------PQVADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKR-GVVLVATSNRPP 169 (362)
T ss_pred ccH-----------------HHHHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHC-CCEEEecCCCCh
Confidence 100 1112222 334567999999843 555444556666665432 567777777777
Q ss_pred hH
Q 007044 306 SW 307 (620)
Q Consensus 306 ~~ 307 (620)
..
T Consensus 170 ~~ 171 (362)
T PF03969_consen 170 ED 171 (362)
T ss_pred HH
Confidence 63
No 412
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.10 E-value=2.9 Score=44.02 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=14.8
Q ss_pred CcEEEECCCCChhhHHhH
Q 007044 147 SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (620)
+.++++||.|+|||....
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999996543
No 413
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.03 E-value=1.2 Score=50.64 Aligned_cols=89 Identities=12% Similarity=0.184 Sum_probs=71.4
Q ss_pred chhhhhhHHHHHHh-cCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEeccc
Q 007044 346 SSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (620)
Q Consensus 346 ~~~~~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv 418 (620)
.+.|.+.+..++.. +..++.+||.++.+..+..+...|. .+..+|++++..+|.+...+..+|+.+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 45677777666654 3467899999999999888877775 4668999999999999999999999999999975
Q ss_pred ccccCCCCCccEEEEcC
Q 007044 419 AARGLDINDVQLIIQCE 435 (620)
Q Consensus 419 ~~rGlDi~~v~~VI~~d 435 (620)
+. =.-+++..+||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 43 35677888877644
No 414
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.99 E-value=1.4 Score=43.74 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=19.7
Q ss_pred ChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 244 Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
-|+-|..++. ++..=+++.+||.|++.
T Consensus 90 K~gDlaaiLt----~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAILT----NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHHh----cCCcCCeEEEehhhhcC
Confidence 3666666665 35666789999999984
No 415
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.86 E-value=0.86 Score=46.76 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 129 IESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
+..+++.|..-+.. +-.+++++++++||||||.. +.+++..+-... +.+.+=-|.|+..
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~-------------rivtIEdt~E~~~ 184 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEE-------------RIVTIEDTPELKL 184 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchh-------------cEEEEeccccccC
Confidence 44567777666655 44789999999999999963 444444443322 3666666655543
No 416
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.83 E-value=2.8 Score=43.84 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=17.3
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
+.+++.||.|+|||... ..+...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 45799999999999654 33344443
No 417
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.80 E-value=0.31 Score=44.00 Aligned_cols=117 Identities=24% Similarity=0.214 Sum_probs=63.3
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~ 226 (620)
..+.+.+++|+|||.. ++-+.+.|....-+ . .=+++| +.+.-++..|+++..+..|..
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g~k----------v-gGf~t~----------EVR~gGkR~GF~Ivdl~tg~~ 63 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKGYK----------V-GGFITP----------EVREGGKRIGFKIVDLATGEE 63 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcCce----------e-eeEEee----------eeecCCeEeeeEEEEccCCce
Confidence 3588999999999964 56677777664211 1 234444 233444456777776664321
Q ss_pred hHHHHHHhcCCCcEEEeChHHHHHHHhcCC---c--cCCCccEEEeccchhhh--hcCcHHHHHHHHHh
Q 007044 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGN---I--DLSSLKFRVLDEADEML--RMGFVEDVELILGK 288 (620)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~---~--~l~~l~~lVlDEah~~l--~~~f~~~l~~il~~ 288 (620)
..-- . ......-|+-++...+.+++-. + -+..-+++|+||.--|- ...|.+.++.++..
T Consensus 64 ~~la--~-~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 64 GILA--R-VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEEE--E-cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 1000 0 0012233344433333333100 0 12335789999999873 23488888888754
No 418
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.79 E-value=3.9 Score=47.22 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=25.6
Q ss_pred cEEEeccchhhhhcCc----HHHHHHHHHhccccCCceEEeecCCCChH
Q 007044 263 KFRVLDEADEMLRMGF----VEDVELILGKVEDANKVQTLLFSATLPSW 307 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f----~~~l~~il~~~~~~~~~q~ll~SATl~~~ 307 (620)
.+|+|||+|.++..|- ..++..++..+-. ..++.+..||-+..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E 326 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE 326 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHH
Confidence 4799999999975442 3344445543333 23455666665554
No 419
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=88.75 E-value=5.9 Score=45.06 Aligned_cols=116 Identities=15% Similarity=0.228 Sum_probs=73.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHH---Hh-cCCCcEEEeChHHHHHHHhcCCccCCC
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KL-KKGIDVVIGTPGRIKDHIERGNIDLSS 261 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~---~l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~ 261 (620)
.+.++||.|+|+..|..+++.|... ++.+..++|+.+...... .+ ....+|+||| +.+. ..+++..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCC
Confidence 4557999999999999999888764 577888888766543322 22 2468999999 3344 3678999
Q ss_pred ccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHH
Q 007044 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (620)
Q Consensus 262 l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~ 311 (620)
+++||+-+++...-......+-..........+...++|--.....+...
T Consensus 511 v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~a 560 (655)
T TIGR00631 511 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKA 560 (655)
T ss_pred CcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHH
Confidence 99999888885432222233333333332223345566655555544433
No 420
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.68 E-value=5.2 Score=39.12 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=32.9
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
|.-+++.|++|+|||.-....+.+.+.++. +++++.= .+-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------~~~y~~~-e~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------KVYVITT-ENTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------EEEEEEc-CCCHHHHHHHHHHCC
Confidence 567899999999999765555555554332 3666654 344455555555543
No 421
>PRK08506 replicative DNA helicase; Provisional
Probab=88.46 E-value=2.4 Score=46.31 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=54.1
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEE-eC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL-YG 223 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g 223 (620)
.|.=+++.|+||.|||...+--+.+.+..+ ..+++++. -.-+.|+...+-.... ++...-+ .|
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g-------------~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~ 254 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQD-------------KGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTG 254 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcC-------------CcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcC
Confidence 445688899999999964443444433222 12666643 2445555554432221 2221111 22
Q ss_pred CcchHHHH------HHhcCCCcEEEe-----ChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 224 GAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 224 g~~~~~~~------~~l~~~~~IlV~-----Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
..+...+. ..+.. ..+.|- |+..+...+++-......+++||||=.+.|.
T Consensus 255 ~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 255 DLDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22222221 12222 344443 3444544443211112357899999888764
No 422
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.27 Score=49.26 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=19.7
Q ss_pred HcCCcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
+...|+++.+|||||||+.+ --+.++.+
T Consensus 95 L~KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 34568999999999999844 23444444
No 423
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.29 E-value=1.4 Score=50.07 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=37.4
Q ss_pred ccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 262 l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
--++|+|..|.+.+......+..++++.|. +.+.++.|=+-|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~--~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPE--NLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCC--CeEEEEEeccCCC
Confidence 358999999999888888899999999988 7888888888665
No 424
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.08 E-value=0.63 Score=48.72 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=19.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.+.-++++||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5677999999999999754 33444443
No 425
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.00 E-value=0.38 Score=48.35 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 136 QAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 136 Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
..+.+.. +..+.+++++|+||||||... -.++..+... ..+++++-.+.|+-.
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~------------~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE------------DERIVTIEDPPELRL 169 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT------------TSEEEEEESSS-S--
T ss_pred HHHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc------------ccceEEeccccceee
Confidence 3334433 345789999999999999754 4445555543 124777777666543
No 426
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.97 E-value=3.9 Score=44.32 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=16.2
Q ss_pred CcEEEECCCCChhhHHhHHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpi 167 (620)
+.+|+.||.|+|||.++...+
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 458899999999998654433
No 427
>PRK09087 hypothetical protein; Validated
Probab=87.87 E-value=1.8 Score=42.24 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=23.6
Q ss_pred EEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 264 ~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
+|++|++|.+. .-...+-.++..+... ..+ ++++++.++
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~-g~~-ilits~~~p 128 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQA-GTS-LLMTSRLWP 128 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhC-CCe-EEEECCCCh
Confidence 68999999762 2345566677666552 234 555555443
No 428
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.82 E-value=5.6 Score=39.06 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=29.4
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEc---ccHHHHHHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL---PTRELAKQVHE 205 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~---PtreLa~Qv~~ 205 (620)
-.++.||.|+|||...+-.++. +..+..-.........+.+|||++ |..++...+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~-va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~ 62 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA-MALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEA 62 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH-HhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHH
Confidence 3588999999999765444443 332211000001112345688888 44444444433
No 429
>PRK04328 hypothetical protein; Provisional
Probab=87.80 E-value=1 Score=44.69 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=36.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
.|.-+++.|++|+|||.-.+-.+.+.+..+. .++|++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-------------~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------cEEEEE-eeCCHHHHHHHHHHcC
Confidence 4577999999999999765555666565543 267776 5566666666666654
No 430
>PF12846 AAA_10: AAA-like domain
Probab=87.73 E-value=0.89 Score=46.11 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
+.++++.|+||||||......+.+.+..+ +.++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-------------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-------------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-------------CCEEEEcCCchHHH
Confidence 35789999999999987764444444443 34788877766555
No 431
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.72 E-value=0.5 Score=53.50 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=38.8
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++++.||||||||..|++|-+-.... .++|+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~g---------------S~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKG---------------SVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCC---------------CEEEEeCCchHHHHHHHHHHhC
Confidence 589999999999999999998654321 2899999999988777666553
No 432
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=87.69 E-value=1.6 Score=44.71 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=28.6
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
.++.+||+|++-... -..++-.+ .+--+++.-||--+.-.++....+
T Consensus 224 TilFiDEiHRFNksQ----QD~fLP~V---E~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 224 TILFIDEIHRFNKSQ----QDTFLPHV---ENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred eEEEeHHhhhhhhhh----hhccccee---ccCceEEEecccCCCccchhHHHH
Confidence 468999999984221 12223233 245678888997665556655555
No 433
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.68 E-value=0.92 Score=47.65 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=19.5
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.+..++++||||||||... -.++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3456899999999999643 44555554
No 434
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.49 E-value=7.1 Score=40.71 Aligned_cols=142 Identities=15% Similarity=0.119 Sum_probs=62.4
Q ss_pred EEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHH-HHH---HHHHhhcC-CCceEEEEeCC
Q 007044 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ-VHE---DFDVYGGA-VGLTSCCLYGG 224 (620)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q-v~~---~~~~~~~~-~~~~v~~~~gg 224 (620)
|+.++.|+|||...++.++..+...+. ..+++++ ||..-+.. +.. .+..+... ..+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC
Confidence 467899999999988877777765431 1235555 66554444 222 23333322 12222111111
Q ss_pred cchHHHHHHhcCCCcEEEeChHHH--HHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecC
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRI--KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl--~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
.-. +.++..|.+.+.+.- .+-+. -..+.++++||+-.+.+..+...+........ ....+++|-
T Consensus 70 ~~~------~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~ 135 (384)
T PF03237_consen 70 KII------LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG---GSIRMYIST 135 (384)
T ss_dssp EEE------ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST---T--EEEEEE
T ss_pred cEE------ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc---CcceEEeec
Confidence 100 134556666663321 11111 25567899999887754433333333332222 122224444
Q ss_pred C--CChHHHHHHHHhc
Q 007044 303 T--LPSWVKHISTKFL 316 (620)
Q Consensus 303 T--l~~~~~~~~~~~~ 316 (620)
| ...+...+.....
T Consensus 136 p~~~~~~~~~~~~~~~ 151 (384)
T PF03237_consen 136 PPNPGGWFYEIFQRNL 151 (384)
T ss_dssp ---SSSHHHHHHHHHH
T ss_pred CCCCCCceeeeeehhh
Confidence 3 2345666666555
No 435
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=87.28 E-value=0.85 Score=42.67 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.4
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
+.+-+++++||...-++......+..++..+... ..++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 3566889999999999888777777777665432 355665543
No 436
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=87.24 E-value=1.1 Score=45.93 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=20.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
.|.-+.+.+|+|||||...+..+.+....
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~ 82 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA 82 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45678899999999997655445544443
No 437
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.22 E-value=0.96 Score=46.27 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.4
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..++++||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999643
No 438
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.08 E-value=1.1 Score=51.72 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=49.4
Q ss_pred CCCeEEEEEcccccHHHHHHhccc---------ch-hhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 362 SGGRTIIFTETKESASQLADLLPG---------AR-ALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~~---------~~-~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
.+.++++.++|..-+.+.++.|.. +. .+||.|+.++++.++++|.+|+++|||+|..+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 568999999998888888877761 11 28999999999999999999999999999764
No 439
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.07 E-value=1 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=19.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|+-+++.||+|+|||.... -+...+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~-~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ-KIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHH-HHHHhhc
Confidence 68889999999999997433 2444443
No 440
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.96 E-value=0.42 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=16.9
Q ss_pred EEecccccccCCCCCccEEEEcC
Q 007044 413 LVATNVAARGLDINDVQLIIQCE 435 (620)
Q Consensus 413 LvaTdv~~rGlDi~~v~~VI~~d 435 (620)
-+.|---+.|+.++.|.+|+.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 45666678899999887777644
No 441
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.96 E-value=2.2 Score=49.77 Aligned_cols=18 Identities=33% Similarity=0.176 Sum_probs=15.1
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999643
No 442
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=86.71 E-value=1.2 Score=49.91 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=31.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHc--CCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 123 KLKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il~--g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|.+.|| .|-|.+.+..++. +.-++++||||||||... ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3566676 5667777766553 345889999999999764 34555554
No 443
>PRK05748 replicative DNA helicase; Provisional
Probab=86.61 E-value=4.2 Score=44.18 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=18.7
Q ss_pred HcCCcEEEECCCCChhhHHhHHHHHHHH
Q 007044 144 LDGSDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
..|.=+++.|+||+|||. |++-++..+
T Consensus 201 ~~G~livIaarpg~GKT~-~al~ia~~~ 227 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTA-FALNIAQNV 227 (448)
T ss_pred CCCceEEEEeCCCCCchH-HHHHHHHHH
Confidence 345668899999999995 444444443
No 444
>PRK07004 replicative DNA helicase; Provisional
Probab=86.57 E-value=2.4 Score=46.10 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=18.0
Q ss_pred HcCCcEEEECCCCChhhHHhHHHHHHH
Q 007044 144 LDGSDLVGRARTGQGKTLAFVLPILES 170 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~lpil~~ 170 (620)
..|.=+++.|.||+|||.- ++-++..
T Consensus 211 ~~g~liviaarpg~GKT~~-al~ia~~ 236 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAF-SMNIGEY 236 (460)
T ss_pred CCCceEEEEeCCCCCccHH-HHHHHHH
Confidence 3456688899999999954 4444433
No 445
>PHA00350 putative assembly protein
Probab=86.42 E-value=2.1 Score=45.17 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.9
Q ss_pred EEEECCCCChhhHHhHH-HHHHHHhCC
Q 007044 149 LVGRARTGQGKTLAFVL-PILESLTNG 174 (620)
Q Consensus 149 vi~~a~TGsGKTla~~l-pil~~l~~~ 174 (620)
.++.|..|||||+-.+- -++.++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47889999999987665 466666665
No 446
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=86.35 E-value=0.51 Score=48.86 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.3
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+-+++.+|.|+|||+..
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 45889999999999854
No 447
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.35 E-value=7.2 Score=45.24 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=23.0
Q ss_pred CCCCCcHHHHHHHHHHH------cCCcEEEECCCCChhhHHh
Q 007044 128 GIESLFPIQAMTFDMVL------DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il------~g~dvi~~a~TGsGKTla~ 163 (620)
|-..|.--|..-+..++ ...++|+.||+|+|||...
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 33344444554443333 2368999999999999764
No 448
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.28 E-value=1.7 Score=43.49 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=30.3
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHc--CCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 123 KLKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il~--g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|.+.|+ .+.|.+.+..++. +.-+++.|+||||||... ..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 3556665 5667777766553 345899999999999753 33445553
No 449
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.23 E-value=0.64 Score=45.39 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.9
Q ss_pred EEEECCCCChhhHHhH
Q 007044 149 LVGRARTGQGKTLAFV 164 (620)
Q Consensus 149 vi~~a~TGsGKTla~~ 164 (620)
+|+.|+|||||+...+
T Consensus 130 viiVGaTGSGKSTtmA 145 (375)
T COG5008 130 VIIVGATGSGKSTTMA 145 (375)
T ss_pred EEEECCCCCCchhhHH
Confidence 8899999999998654
No 450
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=86.10 E-value=4.2 Score=43.94 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=17.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILES 170 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~ 170 (620)
.|.=+++.|+||+|||.. ++-++..
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~ 218 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAEN 218 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHH
Confidence 455688999999999954 4444333
No 451
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.09 E-value=3.1 Score=43.16 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=25.1
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
....+++|+||||+|.. .....+++.+..++..-+++|.++
T Consensus 108 ~~~~kvviI~~a~~~~~----~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA----SAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH----HHHHHHHHHhcCCCCCceEEEEeC
Confidence 45678999999999853 233455555554333344455544
No 452
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=4.2 Score=41.16 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=63.6
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCe-EEEEcccHH-----------HHHHHHHHHHHhhcC
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS-VLVLLPTRE-----------LAKQVHEDFDVYGGA 213 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~-~Lil~Ptre-----------La~Qv~~~~~~~~~~ 213 (620)
++=+++.||+|+|||.. +=.+.+.+.-... .+.++ .||=...-. |+.++++.+..+...
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~--------~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTN--------DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeec--------CccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 45689999999999952 3344455433211 11111 344444433 455555556666665
Q ss_pred CCceEEEEeCCcc------------------------hHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEecc
Q 007044 214 VGLTSCCLYGGAP------------------------YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (620)
Q Consensus 214 ~~~~v~~~~gg~~------------------------~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDE 269 (620)
.+.-|..+..... .--|...+++.++++|-|..-|.+ .++.-.+|-
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~----------siD~AfVDR 317 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD----------SIDVAFVDR 317 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH----------HHHHHhhhH
Confidence 5665655554221 112455666777887777655544 345567788
Q ss_pred chhhhhcC
Q 007044 270 ADEMLRMG 277 (620)
Q Consensus 270 ah~~l~~~ 277 (620)
||-....|
T Consensus 318 ADi~~yVG 325 (423)
T KOG0744|consen 318 ADIVFYVG 325 (423)
T ss_pred hhheeecC
Confidence 88665544
No 453
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=85.93 E-value=2.4 Score=42.27 Aligned_cols=141 Identities=19% Similarity=0.127 Sum_probs=68.6
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEccc---HHHHHHHHHHHHHhhcCCCceEEEE
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT---RELAKQVHEDFDVYGGAVGLTSCCL 221 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt---reLa~Qv~~~~~~~~~~~~~~v~~~ 221 (620)
.|.=+++.|+||.|||...+-.+.+.+.... ..+++++.= .+++..+.... .++....+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~------------~~vly~SlEm~~~~l~~R~la~~------s~v~~~~i 79 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG------------YPVLYFSLEMSEEELAARLLARL------SGVPYNKI 79 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS------------SEEEEEESSS-HHHHHHHHHHHH------HTSTHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHh------hcchhhhh
Confidence 3455889999999999765555555555421 238888752 33333332222 11211111
Q ss_pred eCCcchHHHH-------HHhcCCCcEEEeC----hHHHHHHHhcCCccCCCccEEEeccchhhhhc----CcHHHHHHHH
Q 007044 222 YGGAPYHAQE-------FKLKKGIDVVIGT----PGRIKDHIERGNIDLSSLKFRVLDEADEMLRM----GFVEDVELIL 286 (620)
Q Consensus 222 ~gg~~~~~~~-------~~l~~~~~IlV~T----p~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~----~f~~~l~~il 286 (620)
..|.-..... ..+....-.+..+ +..+.+.+.+-......+++||||=.|.|-.. +....+..+.
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~ 159 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEIS 159 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHH
T ss_pred hccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHH
Confidence 1121111111 1222222223343 44555555432222367889999999987653 2344444443
Q ss_pred Hhc---cccCCceEEeecCC
Q 007044 287 GKV---EDANKVQTLLFSAT 303 (620)
Q Consensus 287 ~~~---~~~~~~q~ll~SAT 303 (620)
..+ ....++.++++|..
T Consensus 160 ~~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 160 RELKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHHHcCCeEEEcccc
Confidence 333 22224566666554
No 454
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=85.89 E-value=2.1 Score=45.58 Aligned_cols=153 Identities=14% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHH
Q 007044 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (620)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreL 199 (620)
++..+++. +-.+-..|.++.=..-.|+- .++|=.|||||...++-+.+....+ +.-++++.+=|+.|
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn-----------Pd~~I~~Tfftk~L 218 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN-----------PDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC-----------CCceEEEEeehHHH
Confidence 44444432 33445566666544445554 6688899999986665555433333 33469999999999
Q ss_pred HHHHHHHHHHhhcC-----C---CceEEEEeCCcchHHHHHHhc---CCCcEEEeCh----HHHHHHHhcCCccCCCccE
Q 007044 200 AKQVHEDFDVYGGA-----V---GLTSCCLYGGAPYHAQEFKLK---KGIDVVIGTP----GRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 200 a~Qv~~~~~~~~~~-----~---~~~v~~~~gg~~~~~~~~~l~---~~~~IlV~Tp----~rl~~~l~~~~~~l~~l~~ 264 (620)
+.++.....+++-. . .+-+..-.||........... .-..+-++-- ......+-...-+..-+++
T Consensus 219 ~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ 298 (660)
T COG3972 219 ASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDY 298 (660)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccE
Confidence 99998877665411 1 123333445544322211111 1111222111 1111112122223667899
Q ss_pred EEeccchhhhhcCcHHHHHHHH
Q 007044 265 RVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 265 lVlDEah~~l~~~f~~~l~~il 286 (620)
|.+||+.-+ ..+|.+....+.
T Consensus 299 ilIDE~QDF-P~~F~~Lcf~~t 319 (660)
T COG3972 299 ILIDESQDF-PQSFIDLCFMVT 319 (660)
T ss_pred EEecccccC-CHHHHHHHHHHh
Confidence 999999866 345555444443
No 455
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=5.7 Score=44.45 Aligned_cols=95 Identities=19% Similarity=0.315 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHHH--------cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHH
Q 007044 131 SLFPIQAMTFDMVL--------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (620)
Q Consensus 131 ~~~~~Q~~~i~~il--------~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (620)
-+..+-...+..+. +|+-++..||+|-|||-.. .-
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-------------------------------------kS 457 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-------------------------------------KS 457 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-------------------------------------HH
Confidence 34455666666543 4678999999999999532 22
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEe-ChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG-TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 203 v~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~-Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
|++.+.+- +..++ .||...... ++..-.-.|| -||++.+.|.+-... + -++.+||+|.+.
T Consensus 458 IA~ALnRk--FfRfS----vGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~--N-PliLiDEvDKlG 518 (906)
T KOG2004|consen 458 IARALNRK--FFRFS----VGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTE--N-PLILIDEVDKLG 518 (906)
T ss_pred HHHHhCCc--eEEEe----ccccccHHh---hcccceeeeccCChHHHHHHHhhCCC--C-ceEEeehhhhhC
Confidence 22222110 11122 355543333 3333344454 499999999763221 1 258999999986
No 456
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.81 E-value=1.9 Score=43.05 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=21.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
.|.-+++.|++|+|||...+-.+.+.+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 45679999999999997655555554443
No 457
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=85.73 E-value=6.1 Score=37.59 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhcccc-CCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~-~~~q~ll~SAT 303 (620)
+.+-+++++||...-++......+..++...... ...+++++|.-
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th 174 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQ 174 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3567899999999998887777777766554321 13467777654
No 458
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.69 E-value=3 Score=40.88 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=27.6
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhcccc
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~ 292 (620)
+-+++|+||.=.++|..-...+..++..++..
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 35789999999999998888999999888763
No 459
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=85.56 E-value=0.77 Score=51.92 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=39.2
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++++.||||||||..+++|-+-.... .++|+=|--|+....+...++.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~---------------S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPG---------------SAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCC---------------CEEEEeCcchHHHHHHHHHHhC
Confidence 689999999999999999997754321 2899999999988777665554
No 460
>PRK08840 replicative DNA helicase; Provisional
Probab=85.38 E-value=5.9 Score=43.09 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=24.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~ 170 (620)
|+.+.++---..+.-+..|.=+|+.|.||.|||.-. +-+...
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafa-lnia~~ 240 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFA-MNLCEN 240 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHH-HHHHHH
Confidence 444444444444433445566788999999999644 444333
No 461
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=85.27 E-value=2.2 Score=48.25 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=40.0
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH--HHHHHHHHHHHhhc
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE--LAKQVHEDFDVYGG 212 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre--La~Qv~~~~~~~~~ 212 (620)
..++++.|+||+|||..+.+-+.+.+..+. .++++=|-.. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~-------------~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGD-------------VVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 468999999999999888666666665442 3778878764 77777777776654
No 462
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.13 E-value=1.3 Score=49.21 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCChhhH
Q 007044 145 DGSDLVGRARTGQGKTL 161 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTl 161 (620)
.|+-+.+.||+|||||.
T Consensus 360 ~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 360 PGERVAILGPSGSGKST 376 (529)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67889999999999997
No 463
>PRK09354 recA recombinase A; Provisional
Probab=84.98 E-value=3.2 Score=43.04 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=30.0
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
.|+-+.+.+|+|||||...+..+.+....+. .++++..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~-------------~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGG-------------TAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------cEEEECCccchHH
Confidence 3567889999999999876655655554432 3788776554443
No 464
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.93 E-value=1.4 Score=48.11 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=30.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHcC-C-cEEEECCCCChhhHHhHHHHHHHHh
Q 007044 123 KLKSKGIESLFPIQAMTFDMVLDG-S-DLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~il~g-~-dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|.+.|| .+-|.+.+..++.. + -++++||||||||... ..++..+.
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 4556665 67777777776643 3 3789999999999754 23455443
No 465
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=1.8 Score=50.72 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=31.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHh
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~ 163 (620)
-.|++.|....++..|+++-+..+.-.+.- -+. +.--+-++.++|.|||||+..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f-~~~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFF-DNFNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHh-hhcccCCCcceeecCCCCCchhHHH
Confidence 345666666667777776644322211111 011 112356999999999999854
No 466
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.86 E-value=2.9 Score=42.98 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=28.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
.|+-+.+.+|+|||||...+..+.+....+. .++++.+--.+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~-------------~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGG-------------TVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------CEEEECccccHHH
Confidence 3567889999999999755544554443322 3788876544443
No 467
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.79 E-value=3.7 Score=46.08 Aligned_cols=73 Identities=18% Similarity=0.361 Sum_probs=55.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.++||.|+|+..|.++++.|... ++.+..++|+.+.......+. ...+||||| +.+.+ .+++.++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~ar-GIDip~V 326 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAAR-GLHIDGV 326 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhc-CCCccCC
Confidence 346999999999999999988654 578999999988766544332 468999999 34444 5688999
Q ss_pred cEEEecc
Q 007044 263 KFRVLDE 269 (620)
Q Consensus 263 ~~lVlDE 269 (620)
++||.-.
T Consensus 327 ~~VInyd 333 (572)
T PRK04537 327 KYVYNYD 333 (572)
T ss_pred CEEEEcC
Confidence 9887643
No 468
>PRK13764 ATPase; Provisional
Probab=84.76 E-value=1.8 Score=48.33 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=20.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.+++++++|+||||||.. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999964 344555554
No 469
>PHA00012 I assembly protein
Probab=84.68 E-value=3 Score=42.39 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.6
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhCC
Q 007044 149 LVGRARTGQGKTLAFVLPILESLTNG 174 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~ 174 (620)
-++.|..|||||+..+.-++..+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 57899999999999888888888776
No 470
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=84.55 E-value=0.94 Score=50.85 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=38.1
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++++.||||||||..+++|-+-.. .. .++|+=|.-|++......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~--~g-------------S~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY--GG-------------PLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC--CC-------------CEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999964322 11 2899999999988777655544
No 471
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.47 E-value=2.8 Score=46.88 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=74.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEE-EcccHHHHHHHHH-HHHHhhcCC-----Cce
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV-LLPTRELAKQVHE-DFDVYGGAV-----GLT 217 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Li-l~PtreLa~Qv~~-~~~~~~~~~-----~~~ 217 (620)
.|+.+-+.||.|+|||.+ .-++++++.-... ++++ =.|-+++=.++.+ .+.-.++.. .+.
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~PtsG-----------~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYDPTSG-----------RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcCCCCC-----------eEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 578999999999999984 4556777653211 1111 1344444333222 111111100 011
Q ss_pred EEEEeCCcc--------------hHHHHHHhcCCCcEEEeChHHHHHHHhcC-----CccCCCccEEEeccchhhhhcCc
Q 007044 218 SCCLYGGAP--------------YHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLRMGF 278 (620)
Q Consensus 218 v~~~~gg~~--------------~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-----~~~l~~l~~lVlDEah~~l~~~f 278 (620)
--..||-.+ ....+..+..+++-.|+.-|..+.-=++. .--+++-.++|+|||-.-||..-
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 111222221 11222344456666666665432210000 01156678899999999999887
Q ss_pred HHHHHHHHHhccccCCceEEeecC
Q 007044 279 VEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 279 ~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
...++..+..+.. + ++++.=|
T Consensus 640 E~lVq~aL~~~~~--~-rTVlvIA 660 (716)
T KOG0058|consen 640 EYLVQEALDRLMQ--G-RTVLVIA 660 (716)
T ss_pred HHHHHHHHHHhhc--C-CeEEEEe
Confidence 7788888877765 3 5555544
No 472
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=84.43 E-value=1 Score=46.17 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.2
Q ss_pred HHcCCcEEEECCCCChhhHH
Q 007044 143 VLDGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla 162 (620)
+..+.+++++|+||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34688999999999999974
No 473
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.16 E-value=0.86 Score=51.54 Aligned_cols=46 Identities=24% Similarity=0.162 Sum_probs=36.2
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
.++++.||||||||..+++|-+..... .++|+=|-.|+..-.+...
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~---------------S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGH---------------SSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCC---------------CEEEEeCcHHHHHHHHHHH
Confidence 679999999999999999998743211 2899999999976655544
No 474
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.15 E-value=6.6 Score=40.51 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=32.6
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCc-HHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLF-PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~-~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
-.|.+.+=-+.++++|++.-+..+. |-.-.--..+..-+.+++.+|+|+|||..+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 4577777677777777765332111 111111111223478999999999999854
No 475
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=84.07 E-value=9 Score=42.32 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=82.3
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhc-CCCc-eEEEEeCC
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGL-TSCCLYGG 224 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~-~~~~-~v~~~~gg 224 (620)
+-.+..-|=-.|||. |+.|++..+... -.+.++.|++.-|.-+.-|.+++..-.. ..+- .+...-
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s----------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k-- 269 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN----------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK-- 269 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh----------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec--
Confidence 456667788899995 678888887764 2567799999999999988887753221 1111 111111
Q ss_pred cchHHHHHHhcCCCcEEEeChHHH-----HHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEe
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRI-----KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl-----~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll 299 (620)
+--|.+.-||.= ....+.+.+.-.++.++++||||-+- .+.+..|+..+... +...|+
T Consensus 270 ------------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~-~~KiIf 332 (668)
T PHA03372 270 ------------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQN-TTKIIF 332 (668)
T ss_pred ------------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhccc-CceEEE
Confidence 123444444321 11122234556678999999999764 45677888877654 578888
Q ss_pred ecCCC
Q 007044 300 FSATL 304 (620)
Q Consensus 300 ~SATl 304 (620)
.|.|-
T Consensus 333 ISS~N 337 (668)
T PHA03372 333 ISSTN 337 (668)
T ss_pred EeCCC
Confidence 88874
No 476
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=84.03 E-value=1.8 Score=43.14 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=37.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhc
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~ 212 (620)
.|..+++.|++|||||+-..-.+.+.+..+. .+++++ +.+...++.+.+..++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge-------------~vlyvs-~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGE-------------PVLYVS-TEESPEELLENARSFGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC-------------cEEEEE-ecCCHHHHHHHHHHcCC
Confidence 4688999999999999755555555554432 256664 56777888777776553
No 477
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=84.02 E-value=0.93 Score=51.16 Aligned_cols=49 Identities=29% Similarity=0.243 Sum_probs=37.5
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++++.||||||||..+++|-+-.. .. .++|+=|..|+........++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~--~g-------------S~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW--GG-------------PLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC--CC-------------CEEEEeCcHHHHHHHHHHHHHC
Confidence 5799999999999999999975321 11 2788889999988776655443
No 478
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=83.98 E-value=1 Score=44.99 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=20.8
Q ss_pred HHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 138 MTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 138 ~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
.++..+..|.++++.|++|+|||...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 34445567899999999999999754
No 479
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=83.74 E-value=1.9 Score=48.26 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=45.8
Q ss_pred HHhhcCCceEEEecccccccCCCCCccEEE--------EcCCCCCHHHHHHHhcccccCCC
Q 007044 403 AGFRSGKFMTLVATNVAARGLDINDVQLII--------QCEPPRDVEAYIHRSGRTGRAGN 455 (620)
Q Consensus 403 ~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI--------~~d~P~s~~~yiqr~GRtgR~g~ 455 (620)
++|..|+-.|-|-+.+++-||-+..-+-|+ ...+|||...-||..|||.|..+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 568889888999999999999987655554 47899999999999999999987
No 480
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.46 E-value=12 Score=44.22 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.9
Q ss_pred CCcEEEECCCCChhhHHhH
Q 007044 146 GSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~ 164 (620)
..+.|+.||+|+|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3689999999999997543
No 481
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.44 E-value=2.4 Score=38.53 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=29.2
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCC
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
..+++++||...-+|......+..++..+... . ++++++.-
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~-~tii~~sh 138 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEE-G-RTVIIVTH 138 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 46789999999988887777887777776542 2 34555443
No 482
>COG1485 Predicted ATPase [General function prediction only]
Probab=83.30 E-value=13 Score=38.26 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=63.4
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~ 226 (620)
+-+-++|+-|.|||. ++-++-....... -.-++.-.-+..+++++..+-+.
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~~--------------k~R~HFh~FM~~vH~~l~~l~g~------------- 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGER--------------KRRLHFHRFMARVHQRLHTLQGQ------------- 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCccc--------------cccccHHHHHHHHHHHHHHHcCC-------------
Confidence 568999999999997 3333333333221 12246667788888888765311
Q ss_pred hHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCCh
Q 007044 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (620)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~ 306 (620)
.|.+-. +.+- ...+.++|++||.+- .|-+-.-.+..++..+-.. ++.++..|-|.|.
T Consensus 117 -----------~dpl~~----iA~~------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~-GV~lvaTSN~~P~ 173 (367)
T COG1485 117 -----------TDPLPP----IADE------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFAR-GVVLVATSNTAPD 173 (367)
T ss_pred -----------CCccHH----HHHH------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHC-CcEEEEeCCCChH
Confidence 111110 1111 144567899999883 3444333455555555332 6788888999887
Q ss_pred H
Q 007044 307 W 307 (620)
Q Consensus 307 ~ 307 (620)
.
T Consensus 174 ~ 174 (367)
T COG1485 174 N 174 (367)
T ss_pred H
Confidence 4
No 483
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.30 E-value=7.1 Score=45.34 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.++.+++.||+|||||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 357899999999999974
No 484
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=83.15 E-value=4 Score=36.59 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
+.+-+++++||.-.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4456789999999888887777777777665
No 485
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=83.14 E-value=1.2 Score=42.10 Aligned_cols=34 Identities=47% Similarity=0.817 Sum_probs=30.8
Q ss_pred CCCcEEEeChHHHHHHHhcCCccCCCccEEEecc
Q 007044 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (620)
Q Consensus 236 ~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDE 269 (620)
+..++-||||+|+..+++.+.+.++.+.+||+|=
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 3578899999999999999999999999999983
No 486
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.98 E-value=0.76 Score=44.49 Aligned_cols=57 Identities=11% Similarity=0.232 Sum_probs=31.0
Q ss_pred ChHHHHHHHhcCCccCCCccEEEeccchhhh-h----cCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEML-R----MGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 244 Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l-~----~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
+...+++.+.+.... -+||+||+|.+. . ..+...+..++....... ...++++++-.
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~~S~~ 166 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-NVSIVITGSSD 166 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-TEEEEEEESSH
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-CceEEEECCch
Confidence 344555555543222 579999999998 1 235556666666643332 34455666643
No 487
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.97 E-value=4.8 Score=45.37 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHH---HcCCcEEEECCCCChhhHHhH
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV---LDGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i---l~g~dvi~~a~TGsGKTla~~ 164 (620)
-.|..++++-.++..++.+... .-+.. ..++-+++.||+|+|||.++-
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 3456677777777666544321 11111 123448999999999998543
No 488
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.96 E-value=4.9 Score=44.46 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=32.5
Q ss_pred CCCCCccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 105 SEHPNAVSRFRISVPLREKLKSK---GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
..+.-.|++.|=-+.+...|+.. ....|-.+..-.+ -.-+-|++.+|+|+|||+.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 34455677777556666655532 2222222222221 12377999999999999854
No 489
>PRK08760 replicative DNA helicase; Provisional
Probab=82.92 E-value=6.6 Score=42.92 Aligned_cols=113 Identities=20% Similarity=0.147 Sum_probs=53.5
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh-CCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~-~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g 223 (620)
.|.=+++.|+||.|||.. ++-++..+. ... ..++|.+. -.-..|+...+........... ...|
T Consensus 228 ~G~LivIaarPg~GKTaf-al~iA~~~a~~~g------------~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g 292 (476)
T PRK08760 228 PTDLIILAARPAMGKTTF-ALNIAEYAAIKSK------------KGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTG 292 (476)
T ss_pred CCceEEEEeCCCCChhHH-HHHHHHHHHHhcC------------CceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcC
Confidence 345578899999999954 444444332 211 12666643 2334455555543322222111 1122
Q ss_pred CcchHHHH------HHhcCCCcEEEe-----ChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 224 GAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 224 g~~~~~~~------~~l~~~~~IlV~-----Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
..+...+. ..+. ...+.|. |+..+...+.+-. .-..+++||||=.+.|.
T Consensus 293 ~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 293 ALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred CCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 22222211 1222 2445444 3444444333211 12357899999888774
No 490
>PRK08006 replicative DNA helicase; Provisional
Probab=82.92 E-value=13 Score=40.62 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=54.3
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh-CCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEE-e
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL-Y 222 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~-~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~ 222 (620)
.|.=+|+.|.+|.|||. |++-++..+. .. +..++|.+.= .-..|+...+-... .++...-+ .
T Consensus 223 ~G~LiiIaarPgmGKTa-falnia~~~a~~~------------g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~ 286 (471)
T PRK08006 223 PSDLIIVAARPSMGKTT-FAMNLCENAAMLQ------------DKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRT 286 (471)
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHhc------------CCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhc
Confidence 44557889999999995 4444443332 21 1126666532 33444444443222 12222112 2
Q ss_pred CCcchHHHHH------HhcCCCcEEEe-----ChHHHHHHHhcCCccCCCccEEEeccchhhh
Q 007044 223 GGAPYHAQEF------KLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (620)
Q Consensus 223 gg~~~~~~~~------~l~~~~~IlV~-----Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l 274 (620)
|..+...+.+ .+.....+.|- |+..+...+.+-......+++||||=.+.|-
T Consensus 287 ~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 287 GQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 3333222211 22133455553 4444444443211112357899999988774
No 491
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.83 E-value=1.7 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=18.1
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
.+++.|++|||||. +++-++..+..
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc
Confidence 68999999999995 45555544433
No 492
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=82.55 E-value=3.9 Score=45.92 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=42.6
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH--HHHHHHHHHHHHhhcC
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR--ELAKQVHEDFDVYGGA 213 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr--eLa~Qv~~~~~~~~~~ 213 (620)
..+.++.|+||+|||..+.+.+.+.+..+. .++++=|-. +|...++..++..+..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g~-------------~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRGD-------------VVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 467999999999999988877777776542 378888877 6777777777776653
No 493
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=82.51 E-value=9 Score=37.59 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=21.6
Q ss_pred HHHHcCC-cEEEECCCCChhhHHhHHHHHHHHh
Q 007044 141 DMVLDGS-DLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 141 ~~il~g~-dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
+.+..|+ -+.++|+-|||||...- .+++.+.
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 3344555 68899999999998765 4444444
No 494
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=82.40 E-value=6.2 Score=42.41 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh---cC-CCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL---KK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l---~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
.|.++|.+.|..-|..+++.|.+. ++++..++||.+.......| +. ..+|+|||.- -- ..++..++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv-----Ag-RGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV-----AG-RGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc-----cc-cCCCCCcc
Confidence 456999999999999988888775 48999999999877665554 33 6899999942 12 35678888
Q ss_pred cEEE
Q 007044 263 KFRV 266 (620)
Q Consensus 263 ~~lV 266 (620)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8765
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=82.22 E-value=1.2 Score=33.59 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.8
Q ss_pred CCcEEEECCCCChhhHH
Q 007044 146 GSDLVGRARTGQGKTLA 162 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla 162 (620)
|...++.+++|||||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45799999999999984
No 496
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=82.06 E-value=1.9 Score=49.91 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.7
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.||||+|||..+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 4799999999999754
No 497
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.01 E-value=0.67 Score=41.80 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=26.3
Q ss_pred EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 149 vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
.|+.||.|||||..|.......+ . .++.+.+.++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~-~----------------~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL-P----------------GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc-C----------------CeEEECHHHHhhhc
Confidence 47889999999988765443222 1 46777777777765
No 498
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=81.99 E-value=2.6 Score=40.88 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=34.7
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhh
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~ 211 (620)
|.-+++.|++|+|||...+-.+.+.+..+. .++|++- .+-..|+.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~-------------~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGE-------------KAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC-------------eEEEEEC-CCCHHHHHHHHHHcC
Confidence 567899999999999755444555554432 2777754 455677777776553
No 499
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=81.97 E-value=8.1 Score=38.28 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=32.3
Q ss_pred CccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeec
Q 007044 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301 (620)
Q Consensus 261 ~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~S 301 (620)
+-+++|+||.-.++|..-..++..++..+....+.-.++.|
T Consensus 127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIs 167 (268)
T COG4608 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFIS 167 (268)
T ss_pred CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 34689999999999999999999999888765445555554
No 500
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=81.91 E-value=4.6 Score=39.12 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=19.6
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
|.-+.+.|++|+|||...+..+...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~ 45 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQL 45 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhc
Confidence 567889999999999765544444433
Done!