Query 007044
Match_columns 620
No_of_seqs 512 out of 4138
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 15:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1E-63 3.6E-68 538.0 42.9 361 107-477 54-420 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.4E-59 1.5E-63 500.0 41.2 370 106-478 12-396 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.2E-59 1.1E-63 500.1 39.1 366 107-488 35-406 (410)
4 3sqw_A ATP-dependent RNA helic 100.0 2.1E-58 7.1E-63 514.9 35.9 432 106-545 14-481 (579)
5 1s2m_A Putative ATP-dependent 100.0 6.1E-57 2.1E-61 480.8 40.3 364 107-487 19-387 (400)
6 3fmp_B ATP-dependent RNA helic 100.0 3E-59 1E-63 510.5 21.7 367 108-493 91-475 (479)
7 3eiq_A Eukaryotic initiation f 100.0 4.7E-57 1.6E-61 483.6 37.2 365 107-487 38-409 (414)
8 3i5x_A ATP-dependent RNA helic 100.0 3.5E-57 1.2E-61 504.2 35.4 370 109-485 68-469 (563)
9 1xti_A Probable ATP-dependent 100.0 4.7E-56 1.6E-60 472.2 40.5 365 108-487 7-380 (391)
10 3fht_A ATP-dependent RNA helic 100.0 8.5E-56 2.9E-60 473.4 39.2 368 107-493 23-408 (412)
11 3pey_A ATP-dependent RNA helic 100.0 2.7E-55 9.1E-60 466.5 41.7 367 108-494 4-387 (395)
12 1hv8_A Putative ATP-dependent 100.0 5E-55 1.7E-59 459.7 40.6 356 108-486 5-366 (367)
13 1fuu_A Yeast initiation factor 100.0 3.2E-56 1.1E-60 473.8 24.8 363 108-487 20-388 (394)
14 2z0m_A 337AA long hypothetical 100.0 4.5E-53 1.5E-57 439.7 38.2 335 116-478 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 5.5E-51 1.9E-55 451.9 31.5 340 107-473 19-382 (591)
16 3oiy_A Reverse gyrase helicase 100.0 1.6E-50 5.5E-55 433.3 33.0 339 119-493 9-395 (414)
17 3fho_A ATP-dependent RNA helic 100.0 5E-52 1.7E-56 455.5 21.4 364 110-493 120-499 (508)
18 1tf5_A Preprotein translocase 100.0 6.2E-52 2.1E-56 459.4 21.9 321 126-466 79-545 (844)
19 3l9o_A ATP-dependent RNA helic 100.0 1.4E-50 4.8E-55 475.7 29.4 336 108-474 161-607 (1108)
20 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-49 4.7E-54 436.3 28.8 340 109-475 2-353 (523)
21 2fsf_A Preprotein translocase 100.0 4.2E-49 1.5E-53 435.4 22.7 322 127-470 71-587 (853)
22 4ddu_A Reverse gyrase; topoiso 100.0 5.1E-47 1.7E-51 445.3 33.2 338 126-499 74-528 (1104)
23 4a2p_A RIG-I, retinoic acid in 100.0 3.3E-47 1.1E-51 423.0 27.5 330 127-466 3-508 (556)
24 1nkt_A Preprotein translocase 100.0 2.8E-47 9.7E-52 421.0 25.4 325 126-470 107-621 (922)
25 3tbk_A RIG-I helicase domain; 100.0 8.8E-47 3E-51 419.3 27.4 327 130-466 3-507 (555)
26 1gku_B Reverse gyrase, TOP-RG; 100.0 8.2E-47 2.8E-51 443.9 27.2 340 122-497 48-489 (1054)
27 2va8_A SSO2462, SKI2-type heli 100.0 3.9E-46 1.3E-50 426.2 31.8 342 108-477 7-419 (715)
28 2zj8_A DNA helicase, putative 100.0 1.4E-46 4.9E-51 429.7 27.6 347 110-484 2-404 (720)
29 2ykg_A Probable ATP-dependent 100.0 3.8E-47 1.3E-51 434.0 19.6 336 121-466 3-516 (696)
30 2p6r_A Afuhel308 helicase; pro 100.0 1.3E-46 4.4E-51 428.9 23.3 332 110-467 2-389 (702)
31 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-45 5.7E-50 425.0 27.0 328 126-466 243-749 (797)
32 2xgj_A ATP-dependent RNA helic 100.0 2.7E-44 9.2E-49 418.9 32.7 315 126-473 82-508 (1010)
33 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-44 8.8E-49 419.4 24.5 329 125-466 242-749 (936)
34 1wp9_A ATP-dependent RNA helic 100.0 6.5E-43 2.2E-47 380.8 30.0 319 131-466 9-475 (494)
35 4a4z_A Antiviral helicase SKI2 100.0 1.8E-42 6.2E-47 403.6 28.5 308 127-464 36-490 (997)
36 4gl2_A Interferon-induced heli 100.0 2.8E-43 9.6E-48 402.2 20.2 314 130-454 6-509 (699)
37 1gm5_A RECG; helicase, replica 100.0 1.1E-42 3.8E-47 393.3 23.1 316 118-466 356-697 (780)
38 4f92_B U5 small nuclear ribonu 100.0 5.3E-42 1.8E-46 416.1 30.0 339 116-473 911-1316(1724)
39 2whx_A Serine protease/ntpase/ 100.0 3.1E-43 1E-47 391.0 11.5 310 114-477 155-493 (618)
40 4f92_B U5 small nuclear ribonu 100.0 2.1E-41 7.3E-46 410.8 28.3 337 128-474 76-482 (1724)
41 2eyq_A TRCF, transcription-rep 100.0 2.1E-40 7.1E-45 391.8 35.2 319 114-466 586-922 (1151)
42 2jlq_A Serine protease subunit 100.0 8.1E-42 2.8E-46 368.6 15.5 285 128-466 1-311 (451)
43 3i32_A Heat resistant RNA depe 100.0 2.3E-40 7.8E-45 335.3 24.5 265 336-614 2-271 (300)
44 3o8b_A HCV NS3 protease/helica 100.0 5.5E-42 1.9E-46 377.4 11.6 305 124-491 210-544 (666)
45 2wv9_A Flavivirin protease NS2 100.0 1.7E-42 5.7E-47 387.4 3.5 302 123-477 202-548 (673)
46 2oca_A DAR protein, ATP-depend 100.0 2.2E-40 7.6E-45 364.3 19.3 311 129-464 111-453 (510)
47 2xau_A PRE-mRNA-splicing facto 100.0 8.6E-40 3E-44 372.1 24.8 329 107-466 70-443 (773)
48 1yks_A Genome polyprotein [con 100.0 7.6E-42 2.6E-46 367.1 6.8 275 142-477 4-314 (440)
49 2fwr_A DNA repair protein RAD2 100.0 7.2E-40 2.5E-44 356.7 18.2 295 130-466 92-454 (472)
50 3fmo_B ATP-dependent RNA helic 100.0 2.1E-38 7.1E-43 323.2 23.4 204 107-326 90-298 (300)
51 3fe2_A Probable ATP-dependent 100.0 1.1E-37 3.7E-42 308.7 26.5 214 106-327 26-239 (242)
52 2z83_A Helicase/nucleoside tri 100.0 1.4E-38 4.6E-43 343.9 16.0 269 140-466 15-313 (459)
53 3iuy_A Probable ATP-dependent 100.0 2.8E-36 9.7E-41 295.7 23.8 210 106-323 16-226 (228)
54 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-36 7E-41 301.6 23.0 229 107-339 21-251 (253)
55 2v6i_A RNA helicase; membrane, 100.0 4.5E-37 1.6E-41 329.3 19.6 267 145-464 1-289 (431)
56 3ber_A Probable ATP-dependent 100.0 6.1E-36 2.1E-40 297.1 26.0 203 109-324 43-246 (249)
57 1vec_A ATP-dependent RNA helic 100.0 1.1E-35 3.7E-40 286.6 26.2 201 109-322 3-204 (206)
58 3rc3_A ATP-dependent RNA helic 100.0 2.9E-37 1E-41 344.0 17.1 294 139-485 148-464 (677)
59 1q0u_A Bstdead; DEAD protein, 100.0 3.4E-36 1.2E-40 293.2 21.9 204 109-325 4-211 (219)
60 3bor_A Human initiation factor 100.0 6.1E-36 2.1E-40 295.0 23.5 206 107-325 28-234 (237)
61 3h1t_A Type I site-specific re 100.0 1.3E-36 4.6E-41 339.8 20.4 315 130-465 177-557 (590)
62 3ly5_A ATP-dependent RNA helic 100.0 8.7E-36 3E-40 298.3 23.5 205 109-321 52-259 (262)
63 2oxc_A Probable ATP-dependent 100.0 1.5E-35 5.1E-40 290.9 24.1 204 107-324 22-227 (230)
64 2gxq_A Heat resistant RNA depe 100.0 4.5E-35 1.5E-39 282.5 25.9 203 110-324 2-204 (207)
65 2pl3_A Probable ATP-dependent 100.0 3.8E-35 1.3E-39 289.2 25.8 208 108-325 24-232 (236)
66 3dmq_A RNA polymerase-associat 100.0 3.1E-35 1.1E-39 343.3 28.0 359 130-506 152-656 (968)
67 1qde_A EIF4A, translation init 100.0 6.1E-35 2.1E-39 285.3 24.8 205 108-326 13-217 (224)
68 3jux_A Protein translocase sub 100.0 5.9E-35 2E-39 316.1 26.2 316 127-468 72-589 (822)
69 1t6n_A Probable ATP-dependent 100.0 1.2E-34 4E-39 282.5 23.5 207 104-323 9-218 (220)
70 3dkp_A Probable ATP-dependent 100.0 3.5E-34 1.2E-38 283.9 22.0 208 108-326 24-241 (245)
71 1z63_A Helicase of the SNF2/RA 100.0 2.7E-32 9.1E-37 299.1 25.9 308 130-466 36-453 (500)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.8E-32 2E-36 313.4 22.0 321 130-474 270-717 (1038)
73 3eaq_A Heat resistant RNA depe 100.0 4.7E-31 1.6E-35 255.0 20.0 202 336-541 5-211 (212)
74 2ipc_A Preprotein translocase 100.0 1.5E-29 5E-34 278.8 30.5 131 126-274 75-215 (997)
75 1z3i_X Similar to RAD54-like; 100.0 9.5E-29 3.2E-33 277.6 35.2 321 131-466 55-528 (644)
76 3mwy_W Chromo domain-containin 100.0 2.7E-29 9.3E-34 289.0 29.4 328 130-477 235-698 (800)
77 1c4o_A DNA nucleotide excision 100.0 8.6E-29 2.9E-33 277.7 26.8 170 294-474 380-559 (664)
78 2d7d_A Uvrabc system protein B 100.0 6E-28 2.1E-32 270.8 24.7 167 294-471 386-562 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 1.5E-27 5.1E-32 220.7 16.9 153 332-485 5-162 (163)
80 2rb4_A ATP-dependent RNA helic 99.9 1.2E-27 4.1E-32 224.1 15.6 159 333-492 4-174 (175)
81 1t5i_A C_terminal domain of A 99.9 2.6E-27 8.9E-32 221.0 14.5 152 334-486 3-160 (172)
82 1fuk_A Eukaryotic initiation f 99.9 8.4E-27 2.9E-31 216.1 14.4 151 336-487 3-159 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.5E-26 5.2E-31 218.3 13.2 149 332-480 15-168 (185)
84 2p6n_A ATP-dependent RNA helic 99.9 1.7E-26 5.8E-31 218.9 13.1 160 313-477 9-174 (191)
85 2yjt_D ATP-dependent RNA helic 99.9 8.8E-27 3E-31 217.1 0.0 150 336-486 3-158 (170)
86 3b6e_A Interferon-induced heli 99.9 6.9E-25 2.4E-29 212.3 11.6 170 126-303 28-216 (216)
87 3llm_A ATP-dependent RNA helic 99.9 1E-23 3.4E-28 207.2 15.4 178 117-316 47-227 (235)
88 2vl7_A XPD; helicase, unknown 99.9 3.3E-23 1.1E-27 227.8 20.5 301 127-466 4-521 (540)
89 3crv_A XPD/RAD3 related DNA he 99.9 7.3E-21 2.5E-25 209.9 28.8 312 131-466 3-531 (551)
90 1rif_A DAR protein, DNA helica 99.9 3E-22 1E-26 202.3 11.7 155 130-308 112-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 1.3E-18 4.4E-23 170.6 16.1 138 130-306 92-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 1.2E-17 4.1E-22 185.7 24.4 317 130-467 2-585 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 4.2E-18 1.4E-22 170.0 8.2 122 345-466 93-224 (271)
94 2e29_A ATP-dependent RNA helic 99.4 2.3E-13 7.8E-18 109.6 6.1 79 541-619 2-80 (92)
95 1w36_D RECD, exodeoxyribonucle 99.0 1.8E-09 6.2E-14 119.9 12.5 145 133-303 151-298 (608)
96 2g0c_A ATP-dependent RNA helic 98.4 2.3E-07 8E-12 72.8 4.8 57 560-619 1-58 (76)
97 4b3f_X DNA-binding protein smu 98.1 8.9E-06 3.1E-10 91.1 10.4 67 131-210 189-256 (646)
98 3e1s_A Exodeoxyribonuclease V, 98.1 1.9E-05 6.6E-10 86.6 12.3 124 131-300 189-312 (574)
99 3upu_A ATP-dependent DNA helic 98.0 3E-05 1E-09 83.0 12.8 72 124-207 18-94 (459)
100 2gk6_A Regulator of nonsense t 98.0 3.8E-05 1.3E-09 85.5 13.7 70 129-210 178-247 (624)
101 2xzl_A ATP-dependent helicase 97.9 6.8E-05 2.3E-09 85.4 13.4 69 130-210 359-427 (802)
102 2wjy_A Regulator of nonsense t 97.8 0.00011 3.8E-09 83.6 12.9 69 130-210 355-423 (800)
103 2o0j_A Terminase, DNA packagin 97.3 0.0028 9.6E-08 65.4 14.2 71 131-212 163-233 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.0067 2.3E-07 66.8 14.4 143 131-300 163-310 (592)
105 3ec2_A DNA replication protein 96.7 0.01 3.4E-07 54.3 11.0 32 133-164 16-56 (180)
106 3hgt_A HDA1 complex subunit 3; 96.7 0.0093 3.2E-07 59.5 11.1 125 346-475 107-248 (328)
107 3lfu_A DNA helicase II; SF1 he 96.6 0.0047 1.6E-07 68.9 9.0 81 130-221 8-90 (647)
108 3i31_A Heat resistant RNA depe 96.5 0.0075 2.6E-07 46.0 6.8 58 548-614 2-59 (88)
109 3vkw_A Replicase large subunit 96.4 0.0095 3.2E-07 62.3 9.4 89 147-278 162-250 (446)
110 1xx6_A Thymidine kinase; NESG, 96.4 0.008 2.7E-07 55.7 7.8 38 146-196 8-45 (191)
111 1pjr_A PCRA; DNA repair, DNA r 96.3 0.0084 2.9E-07 67.8 9.3 71 130-211 10-80 (724)
112 2orw_A Thymidine kinase; TMTK, 96.3 0.0015 5E-08 60.4 2.4 40 145-197 2-41 (184)
113 2b8t_A Thymidine kinase; deoxy 96.2 0.0098 3.4E-07 56.5 7.8 91 145-273 11-101 (223)
114 1l8q_A Chromosomal replication 95.9 0.041 1.4E-06 55.4 11.5 18 146-163 37-54 (324)
115 1uaa_A REP helicase, protein ( 95.9 0.01 3.4E-07 66.6 7.0 81 131-222 2-85 (673)
116 3te6_A Regulatory protein SIR3 95.8 0.051 1.7E-06 54.5 11.2 27 145-172 44-70 (318)
117 1a5t_A Delta prime, HOLB; zinc 95.6 0.034 1.2E-06 56.4 9.0 40 132-172 3-49 (334)
118 3kl4_A SRP54, signal recogniti 95.6 0.051 1.7E-06 56.9 10.4 132 147-316 98-235 (433)
119 2j9r_A Thymidine kinase; TK1, 95.5 0.026 8.9E-07 52.9 7.4 39 146-197 28-66 (214)
120 3bos_A Putative DNA replicatio 95.2 0.039 1.3E-06 52.5 7.8 19 145-163 51-69 (242)
121 2zpa_A Uncharacterized protein 95.2 0.026 8.9E-07 62.0 7.2 113 131-305 175-289 (671)
122 3e2i_A Thymidine kinase; Zn-bi 95.1 0.054 1.8E-06 50.7 7.8 99 145-286 27-125 (219)
123 2kjq_A DNAA-related protein; s 95.1 0.014 4.9E-07 51.6 3.7 19 145-163 35-53 (149)
124 2orv_A Thymidine kinase; TP4A 95.0 0.046 1.6E-06 51.7 7.4 40 145-197 18-57 (234)
125 3u4q_A ATP-dependent helicase/ 95.0 0.034 1.2E-06 66.7 7.9 72 130-210 9-80 (1232)
126 2v1u_A Cell division control p 94.9 0.065 2.2E-06 55.0 8.8 19 145-163 43-61 (387)
127 1d2n_A N-ethylmaleimide-sensit 94.8 0.079 2.7E-06 51.8 8.8 17 147-163 65-81 (272)
128 1w4r_A Thymidine kinase; type 94.3 0.083 2.8E-06 48.7 7.0 39 145-196 19-57 (195)
129 2w58_A DNAI, primosome compone 94.3 0.27 9.4E-06 45.3 10.8 25 147-172 55-79 (202)
130 2z4s_A Chromosomal replication 94.2 0.19 6.5E-06 52.9 10.5 18 146-163 130-147 (440)
131 2qby_B CDC6 homolog 3, cell di 93.8 0.15 5.1E-06 52.4 8.7 18 146-163 45-62 (384)
132 2chg_A Replication factor C sm 93.7 0.55 1.9E-05 43.4 11.9 17 147-163 39-55 (226)
133 3dm5_A SRP54, signal recogniti 93.7 0.41 1.4E-05 50.1 11.7 132 147-316 101-236 (443)
134 3u61_B DNA polymerase accessor 93.6 0.19 6.4E-06 50.5 8.9 38 260-299 104-141 (324)
135 3syl_A Protein CBBX; photosynt 93.5 0.068 2.3E-06 53.2 5.4 18 146-163 67-84 (309)
136 1sxj_E Activator 1 40 kDa subu 93.5 0.36 1.2E-05 48.9 10.9 45 107-163 9-53 (354)
137 1g5t_A COB(I)alamin adenosyltr 93.0 0.78 2.7E-05 42.2 11.1 141 146-312 28-171 (196)
138 3h4m_A Proteasome-activating n 92.9 0.31 1.1E-05 47.7 9.0 53 108-163 13-68 (285)
139 1fnn_A CDC6P, cell division co 92.8 0.27 9.2E-06 50.4 8.7 16 148-163 46-61 (389)
140 2qby_A CDC6 homolog 1, cell di 92.6 0.24 8.2E-06 50.6 8.0 18 146-163 45-62 (386)
141 2w0m_A SSO2452; RECA, SSPF, un 92.3 0.5 1.7E-05 44.3 9.3 20 145-164 22-41 (235)
142 2p65_A Hypothetical protein PF 92.3 0.35 1.2E-05 43.4 7.9 18 146-163 43-60 (187)
143 1njg_A DNA polymerase III subu 92.1 2.4 8.3E-05 39.4 14.0 16 148-163 47-62 (250)
144 1jbk_A CLPB protein; beta barr 92.1 2 6.9E-05 38.3 12.9 18 146-163 43-60 (195)
145 1iqp_A RFCS; clamp loader, ext 92.0 0.61 2.1E-05 46.4 9.9 16 148-163 48-63 (327)
146 2gno_A DNA polymerase III, gam 92.0 0.69 2.4E-05 46.0 10.1 43 259-305 80-122 (305)
147 3pfi_A Holliday junction ATP-d 91.7 0.86 3E-05 45.7 10.8 17 147-163 56-72 (338)
148 1jr3_A DNA polymerase III subu 91.6 2.6 9.1E-05 42.6 14.6 16 148-163 40-55 (373)
149 2hjv_A ATP-dependent RNA helic 91.6 1.1 3.9E-05 39.6 10.3 71 189-269 37-111 (163)
150 2p6n_A ATP-dependent RNA helic 91.6 0.93 3.2E-05 41.5 10.0 70 189-268 56-129 (191)
151 1gm5_A RECG; helicase, replica 91.2 0.22 7.6E-06 56.3 6.2 82 354-435 408-498 (780)
152 3vfd_A Spastin; ATPase, microt 91.1 0.45 1.5E-05 49.1 8.0 18 146-163 148-165 (389)
153 3eie_A Vacuolar protein sortin 90.8 0.44 1.5E-05 47.8 7.4 51 107-163 13-68 (322)
154 1sxj_D Activator 1 41 kDa subu 90.3 1.2 3.9E-05 44.9 10.2 17 147-163 59-75 (353)
155 3hjh_A Transcription-repair-co 90.2 1.3 4.4E-05 47.0 10.6 89 145-252 13-117 (483)
156 1sxj_A Activator 1 95 kDa subu 90.1 0.62 2.1E-05 50.1 8.3 41 260-304 147-189 (516)
157 1fuk_A Eukaryotic initiation f 90.0 2.4 8.2E-05 37.5 10.9 70 189-268 32-105 (165)
158 2rb4_A ATP-dependent RNA helic 89.3 1.2 4.2E-05 39.9 8.5 70 188-267 35-108 (175)
159 3eaq_A Heat resistant RNA depe 89.3 2.8 9.5E-05 38.9 11.2 69 189-267 33-105 (212)
160 2l8b_A Protein TRAI, DNA helic 89.2 0.59 2E-05 42.2 6.0 120 132-301 35-156 (189)
161 1hqc_A RUVB; extended AAA-ATPa 89.1 2.4 8.2E-05 42.0 11.3 18 146-163 38-55 (324)
162 2chq_A Replication factor C sm 88.9 2.5 8.7E-05 41.5 11.3 44 107-163 12-55 (319)
163 1t5i_A C_terminal domain of A 88.3 1.3 4.5E-05 39.6 7.9 71 189-269 33-107 (172)
164 2jgn_A DBX, DDX3, ATP-dependen 88.1 1.4 4.9E-05 40.0 8.1 69 189-267 48-120 (185)
165 1cr0_A DNA primase/helicase; R 87.9 0.44 1.5E-05 47.0 4.8 21 145-165 34-54 (296)
166 2ehv_A Hypothetical protein PH 87.8 0.71 2.4E-05 43.9 6.1 43 260-304 134-181 (251)
167 2r6a_A DNAB helicase, replicat 87.8 1.3 4.4E-05 46.7 8.6 26 145-170 202-227 (454)
168 1sxj_B Activator 1 37 kDa subu 87.4 1.1 3.9E-05 44.2 7.6 16 148-163 44-59 (323)
169 3hu3_A Transitional endoplasmi 86.9 1.3 4.5E-05 47.1 8.1 18 146-163 238-255 (489)
170 1w5s_A Origin recognition comp 86.9 2.3 7.9E-05 43.6 9.9 17 147-163 51-69 (412)
171 3lda_A DNA repair protein RAD5 86.6 5.3 0.00018 41.1 12.2 24 146-169 178-201 (400)
172 2d7d_A Uvrabc system protein B 86.0 9.5 0.00033 42.1 14.7 76 188-273 446-525 (661)
173 4a1f_A DNAB helicase, replicat 86.0 0.54 1.8E-05 47.4 4.2 27 145-171 45-71 (338)
174 3k1j_A LON protease, ATP-depen 85.7 3.8 0.00013 44.8 11.3 22 142-163 56-77 (604)
175 3n70_A Transport activator; si 85.7 0.57 1.9E-05 40.7 3.7 20 144-163 22-41 (145)
176 3co5_A Putative two-component 85.5 0.52 1.8E-05 40.9 3.4 20 143-162 24-43 (143)
177 1nlf_A Regulatory protein REPA 84.8 3.2 0.00011 40.3 9.2 25 143-167 27-51 (279)
178 2fna_A Conserved hypothetical 84.4 21 0.00071 35.3 15.5 42 245-289 124-168 (357)
179 1n0w_A DNA repair protein RAD5 84.3 4.8 0.00016 37.7 10.0 24 145-168 23-46 (243)
180 2q6t_A DNAB replication FORK h 84.2 1.6 5.3E-05 45.9 6.9 115 145-275 199-324 (444)
181 3i32_A Heat resistant RNA depe 83.6 5.3 0.00018 39.4 10.1 69 189-267 30-102 (300)
182 2z43_A DNA repair and recombin 83.2 3 0.0001 41.6 8.3 24 145-168 106-129 (324)
183 3bh0_A DNAB-like replicative h 83.1 2.2 7.5E-05 42.5 7.2 50 145-208 67-116 (315)
184 3i5x_A ATP-dependent RNA helic 83.1 10 0.00034 40.8 13.1 76 187-269 339-418 (563)
185 2qgz_A Helicase loader, putati 82.9 2.6 9E-05 41.7 7.7 20 146-165 152-171 (308)
186 2i4i_A ATP-dependent RNA helic 82.8 4.8 0.00016 41.2 10.0 71 187-267 276-350 (417)
187 2eyq_A TRCF, transcription-rep 82.7 1.6 5.3E-05 51.8 6.8 90 344-433 632-731 (1151)
188 1c4o_A DNA nucleotide excision 82.1 16 0.00054 40.3 14.3 76 188-273 440-519 (664)
189 3cmu_A Protein RECA, recombina 81.8 1.7 5.8E-05 53.7 6.7 61 425-488 1772-1834(2050)
190 3pxi_A Negative regulator of g 81.4 5.3 0.00018 45.0 10.4 16 148-163 523-538 (758)
191 1hv8_A Putative ATP-dependent 80.4 5 0.00017 40.1 9.0 72 187-268 238-313 (367)
192 3fht_A ATP-dependent RNA helic 80.4 5.1 0.00017 40.9 9.2 70 188-267 267-340 (412)
193 3oiy_A Reverse gyrase helicase 80.1 2 6.8E-05 44.4 5.8 79 356-434 57-146 (414)
194 2dr3_A UPF0273 protein PH0284; 80.0 1.8 6.2E-05 40.8 5.1 50 145-208 22-71 (247)
195 3sqw_A ATP-dependent RNA helic 79.9 15 0.00052 39.7 13.1 75 188-269 289-367 (579)
196 4ddu_A Reverse gyrase; topoiso 79.8 1.8 6.1E-05 51.0 5.9 79 356-434 114-203 (1104)
197 1e9r_A Conjugal transfer prote 79.7 1.4 4.7E-05 46.2 4.5 44 145-201 52-95 (437)
198 1ls1_A Signal recognition part 79.1 7 0.00024 38.3 9.2 19 145-163 97-115 (295)
199 3pey_A ATP-dependent RNA helic 78.2 7 0.00024 39.4 9.3 75 187-271 243-321 (395)
200 3e70_C DPA, signal recognition 78.1 4.4 0.00015 40.5 7.4 53 262-316 212-265 (328)
201 1xti_A Probable ATP-dependent 77.7 6.7 0.00023 39.7 9.0 73 188-270 251-327 (391)
202 3nwn_A Kinesin-like protein KI 77.5 1.4 4.9E-05 44.6 3.7 25 139-163 96-122 (359)
203 1oyw_A RECQ helicase, ATP-depe 77.1 6.6 0.00023 42.0 9.0 69 189-267 238-310 (523)
204 2v1x_A ATP-dependent DNA helic 77.0 6.9 0.00024 42.6 9.2 71 187-267 267-341 (591)
205 3bgw_A DNAB-like replicative h 76.8 4.6 0.00016 42.3 7.4 28 145-172 196-223 (444)
206 2db3_A ATP-dependent RNA helic 76.7 8.2 0.00028 40.1 9.4 68 190-267 303-374 (434)
207 2oap_1 GSPE-2, type II secreti 76.5 2 7E-05 45.8 4.7 40 121-162 236-276 (511)
208 1bg2_A Kinesin; motor protein, 76.5 1.8 6.1E-05 43.3 3.9 26 139-164 69-96 (325)
209 3dc4_A Kinesin-like protein NO 75.9 1.7 5.8E-05 43.8 3.6 24 140-163 87-112 (344)
210 2j0s_A ATP-dependent RNA helic 75.8 8.8 0.0003 39.2 9.3 70 188-267 277-350 (410)
211 1u0j_A DNA replication protein 75.7 5.1 0.00018 38.6 6.8 44 118-164 73-122 (267)
212 1s2m_A Putative ATP-dependent 75.7 8.8 0.0003 39.0 9.2 71 188-268 259-333 (400)
213 2yjt_D ATP-dependent RNA helic 77.4 0.58 2E-05 41.9 0.0 69 189-267 32-104 (170)
214 3cmu_A Protein RECA, recombina 75.4 6.1 0.00021 49.0 8.8 46 145-204 1080-1125(2050)
215 2y65_A Kinesin, kinesin heavy 75.0 2 6.9E-05 43.6 3.9 25 139-163 76-102 (365)
216 4etp_A Kinesin-like protein KA 75.0 2.1 7.3E-05 44.1 4.2 26 139-164 132-159 (403)
217 2vvg_A Kinesin-2; motor protei 75.0 2 7E-05 43.3 3.9 24 140-163 82-107 (350)
218 1v8k_A Kinesin-like protein KI 74.9 1.8 6.3E-05 44.5 3.6 26 139-164 146-173 (410)
219 2h58_A Kinesin-like protein KI 74.9 2.1 7.1E-05 42.9 4.0 25 139-163 72-98 (330)
220 4b4t_M 26S protease regulatory 74.8 0.94 3.2E-05 47.2 1.4 55 106-163 175-232 (434)
221 4a14_A Kinesin, kinesin-like p 74.6 2.1 7.3E-05 43.1 4.0 25 139-163 75-101 (344)
222 2zfi_A Kinesin-like protein KI 74.4 2.1 7.3E-05 43.5 3.9 25 139-163 81-107 (366)
223 3hws_A ATP-dependent CLP prote 74.2 3.8 0.00013 41.5 5.9 19 145-163 50-68 (363)
224 3b6u_A Kinesin-like protein KI 74.1 2 6.9E-05 43.7 3.7 25 139-163 93-119 (372)
225 3b85_A Phosphate starvation-in 74.0 3.6 0.00012 38.1 5.1 35 129-163 5-39 (208)
226 1goj_A Kinesin, kinesin heavy 74.0 2.1 7.1E-05 43.3 3.7 24 140-163 73-98 (355)
227 3nbx_X ATPase RAVA; AAA+ ATPas 73.9 3.9 0.00013 43.5 6.0 35 128-162 23-57 (500)
228 3lre_A Kinesin-like protein KI 73.9 2.1 7.3E-05 43.3 3.8 25 139-163 97-123 (355)
229 1t5c_A CENP-E protein, centrom 73.8 2.1 7.1E-05 43.3 3.7 25 139-163 69-95 (349)
230 1x88_A Kinesin-like protein KI 73.8 2 6.8E-05 43.6 3.5 25 139-163 80-106 (359)
231 2px0_A Flagellar biosynthesis 73.7 2 6.8E-05 42.4 3.4 22 145-166 104-125 (296)
232 3gbj_A KIF13B protein; kinesin 73.7 2.1 7.3E-05 43.3 3.7 25 139-163 84-110 (354)
233 2heh_A KIF2C protein; kinesin, 73.6 2.2 7.6E-05 43.6 3.8 26 139-164 126-153 (387)
234 2yhs_A FTSY, cell division pro 73.6 9.1 0.00031 40.4 8.6 18 147-164 294-311 (503)
235 2nr8_A Kinesin-like protein KI 73.6 2.1 7.2E-05 43.3 3.7 25 139-163 95-121 (358)
236 2wbe_C Bipolar kinesin KRP-130 73.6 2 6.8E-05 43.8 3.5 25 139-163 92-118 (373)
237 1wp9_A ATP-dependent RNA helic 73.4 14 0.00046 38.3 10.2 72 189-270 363-446 (494)
238 3t0q_A AGR253WP; kinesin, alph 73.3 1.9 6.6E-05 43.5 3.3 26 139-164 77-104 (349)
239 3u06_A Protein claret segregat 72.8 2.4 8.3E-05 43.8 4.0 26 138-163 129-156 (412)
240 1f9v_A Kinesin-like protein KA 72.4 2 6.7E-05 43.4 3.1 26 139-164 76-103 (347)
241 3cob_A Kinesin heavy chain-lik 72.3 2 7E-05 43.6 3.2 25 139-163 71-97 (369)
242 1ofh_A ATP-dependent HSL prote 72.3 6.2 0.00021 38.5 6.8 18 146-163 50-67 (310)
243 3u4q_B ATP-dependent helicase/ 72.2 3.2 0.00011 49.4 5.3 38 150-197 5-42 (1166)
244 3bfn_A Kinesin-like protein KI 71.8 2.2 7.5E-05 43.6 3.3 23 141-163 92-116 (388)
245 2owm_A Nckin3-434, related to 71.7 2.7 9.1E-05 43.9 4.0 25 139-163 128-154 (443)
246 4ag6_A VIRB4 ATPase, type IV s 71.6 3.7 0.00013 42.1 5.1 42 145-199 34-75 (392)
247 2ffh_A Protein (FFH); SRP54, s 71.4 31 0.001 35.7 11.9 20 146-165 98-117 (425)
248 1qvr_A CLPB protein; coiled co 71.3 9.5 0.00033 43.5 8.9 122 137-301 180-306 (854)
249 2bjv_A PSP operon transcriptio 71.0 2.8 9.5E-05 40.3 3.8 19 145-163 28-46 (265)
250 2r44_A Uncharacterized protein 70.8 2.3 7.7E-05 42.5 3.2 24 140-163 40-63 (331)
251 2zts_A Putative uncharacterize 70.7 2.6 8.9E-05 39.8 3.4 27 145-171 29-55 (251)
252 2j37_W Signal recognition part 70.6 20 0.00069 38.0 10.5 20 148-167 103-122 (504)
253 1vma_A Cell division protein F 70.5 7.3 0.00025 38.5 6.7 19 146-164 104-122 (306)
254 3cf0_A Transitional endoplasmi 70.5 1.2 4.3E-05 43.9 1.1 53 108-163 11-66 (301)
255 2v6i_A RNA helicase; membrane, 70.3 6.1 0.00021 41.1 6.4 67 188-265 172-238 (431)
256 1kgd_A CASK, peripheral plasma 69.7 2 6.9E-05 38.6 2.3 19 145-163 4-22 (180)
257 2rep_A Kinesin-like protein KI 69.3 2.7 9.2E-05 42.9 3.3 25 139-163 107-133 (376)
258 2xau_A PRE-mRNA-splicing facto 68.5 15 0.00051 41.4 9.5 75 187-267 303-393 (773)
259 1p9r_A General secretion pathw 68.3 4.1 0.00014 42.2 4.5 28 135-162 154-183 (418)
260 2eyu_A Twitching motility prot 68.3 2.2 7.5E-05 41.2 2.3 21 143-163 22-42 (261)
261 2gza_A Type IV secretion syste 68.2 3 0.0001 42.4 3.4 20 143-162 172-191 (361)
262 1ry6_A Internal kinesin; kines 67.9 3.4 0.00012 41.9 3.7 20 145-164 82-103 (360)
263 2wv9_A Flavivirin protease NS2 67.8 9.8 0.00034 42.1 7.7 68 187-266 410-478 (673)
264 1yks_A Genome polyprotein [con 67.7 6.6 0.00022 41.0 6.1 68 187-266 177-245 (440)
265 4b4t_J 26S protease regulatory 67.7 2.4 8.1E-05 43.7 2.5 54 107-163 143-199 (405)
266 2oca_A DAR protein, ATP-depend 67.4 17 0.00059 38.3 9.5 73 190-271 350-426 (510)
267 3mm4_A Histidine kinase homolo 67.3 34 0.0012 30.9 10.4 133 145-304 19-161 (206)
268 1pzn_A RAD51, DNA repair and r 66.9 15 0.0005 37.0 8.3 21 146-166 131-151 (349)
269 3vaa_A Shikimate kinase, SK; s 66.9 2.7 9.2E-05 38.5 2.5 19 145-163 24-42 (199)
270 4b4t_H 26S protease regulatory 66.5 2.1 7.3E-05 44.7 1.9 53 108-163 205-260 (467)
271 1tue_A Replication protein E1; 65.7 8 0.00027 35.7 5.4 51 118-171 28-82 (212)
272 2qz4_A Paraplegin; AAA+, SPG7, 65.2 2.9 9.8E-05 39.9 2.5 18 146-163 39-56 (262)
273 3tau_A Guanylate kinase, GMP k 65.0 3.8 0.00013 37.8 3.2 19 145-163 7-25 (208)
274 3trf_A Shikimate kinase, SK; a 65.0 3 0.0001 37.4 2.4 18 146-163 5-22 (185)
275 3b9p_A CG5977-PA, isoform A; A 64.7 2.8 9.4E-05 41.0 2.3 54 107-163 16-71 (297)
276 3a8t_A Adenylate isopentenyltr 64.5 3.2 0.00011 41.6 2.6 18 146-163 40-57 (339)
277 4b4t_L 26S protease subunit RP 64.2 2.1 7.2E-05 44.6 1.3 53 108-163 177-232 (437)
278 1qhx_A CPT, protein (chloramph 64.1 3.1 0.0001 37.0 2.3 18 146-163 3-20 (178)
279 1lvg_A Guanylate kinase, GMP k 64.0 4 0.00014 37.3 3.1 19 145-163 3-21 (198)
280 3foz_A TRNA delta(2)-isopenten 64.0 3.1 0.0001 41.2 2.4 16 148-163 12-27 (316)
281 1ojl_A Transcriptional regulat 64.0 4.3 0.00015 40.0 3.6 19 145-163 24-42 (304)
282 2pt7_A CAG-ALFA; ATPase, prote 63.9 3.4 0.00012 41.4 2.8 19 143-161 168-186 (330)
283 3iij_A Coilin-interacting nucl 63.8 2.2 7.6E-05 38.2 1.3 21 144-164 9-29 (180)
284 2qor_A Guanylate kinase; phosp 63.8 2.9 9.8E-05 38.4 2.1 21 143-163 9-29 (204)
285 3exa_A TRNA delta(2)-isopenten 63.7 2.9 9.9E-05 41.4 2.2 17 147-163 4-20 (322)
286 3lw7_A Adenylate kinase relate 63.4 3.1 0.00011 36.5 2.2 16 148-163 3-18 (179)
287 2qmh_A HPR kinase/phosphorylas 63.2 3.7 0.00013 37.7 2.6 18 145-162 33-50 (205)
288 2jlq_A Serine protease subunit 63.2 15 0.00052 38.3 7.8 67 188-266 189-256 (451)
289 4b4t_K 26S protease regulatory 62.9 2.4 8.3E-05 44.1 1.5 53 108-163 168-223 (428)
290 2j41_A Guanylate kinase; GMP, 62.9 3.2 0.00011 37.9 2.2 20 144-163 4-23 (207)
291 2ze6_A Isopentenyl transferase 62.5 3.2 0.00011 39.7 2.2 16 148-163 3-18 (253)
292 1lv7_A FTSH; alpha/beta domain 62.2 3.3 0.00011 39.5 2.3 53 108-163 8-62 (257)
293 3tr0_A Guanylate kinase, GMP k 61.7 3.8 0.00013 37.3 2.5 19 145-163 6-24 (205)
294 3uk6_A RUVB-like 2; hexameric 61.5 3.2 0.00011 42.0 2.1 18 146-163 70-87 (368)
295 3a00_A Guanylate kinase, GMP k 60.9 4.1 0.00014 36.7 2.5 17 147-163 2-18 (186)
296 1kag_A SKI, shikimate kinase I 60.7 4.3 0.00015 35.8 2.6 18 146-163 4-21 (173)
297 1zp6_A Hypothetical protein AT 60.6 3.1 0.00011 37.5 1.7 19 144-162 7-25 (191)
298 1y63_A LMAJ004144AAA protein; 60.5 4.1 0.00014 36.7 2.4 19 145-163 9-27 (184)
299 3fe2_A Probable ATP-dependent 60.4 11 0.00039 35.3 5.7 68 362-433 101-182 (242)
300 1um8_A ATP-dependent CLP prote 60.3 13 0.00045 37.5 6.6 18 146-163 72-89 (376)
301 2z0m_A 337AA long hypothetical 60.3 16 0.00053 35.8 7.0 69 187-269 220-292 (337)
302 1xwi_A SKD1 protein; VPS4B, AA 60.2 3.7 0.00013 40.9 2.3 50 108-163 8-62 (322)
303 2ewv_A Twitching motility prot 60.2 4 0.00014 41.6 2.5 20 144-163 134-153 (372)
304 1kht_A Adenylate kinase; phosp 60.1 4.1 0.00014 36.5 2.4 18 146-163 3-20 (192)
305 1u94_A RECA protein, recombina 60.0 9.3 0.00032 38.6 5.2 28 145-172 62-89 (356)
306 3rc3_A ATP-dependent RNA helic 60.0 23 0.0008 39.0 8.8 73 190-273 323-401 (677)
307 3jvv_A Twitching mobility prot 59.9 4.2 0.00014 41.2 2.6 18 145-162 122-139 (356)
308 2whx_A Serine protease/ntpase/ 59.8 22 0.00074 38.9 8.5 69 187-266 355-423 (618)
309 3ney_A 55 kDa erythrocyte memb 59.5 5.6 0.00019 36.5 3.2 20 144-163 17-36 (197)
310 2zr9_A Protein RECA, recombina 58.9 9.1 0.00031 38.5 5.0 28 145-172 60-87 (349)
311 3t15_A Ribulose bisphosphate c 58.9 3.6 0.00012 40.3 1.9 17 147-163 37-53 (293)
312 1ly1_A Polynucleotide kinase; 58.5 4.3 0.00015 35.9 2.2 16 148-163 4-19 (181)
313 4gp7_A Metallophosphoesterase; 58.0 4.1 0.00014 36.2 2.0 20 145-164 8-27 (171)
314 3tbk_A RIG-I helicase domain; 57.9 25 0.00087 37.2 8.7 74 188-267 390-476 (555)
315 2qp9_X Vacuolar protein sortin 57.8 4.6 0.00016 40.8 2.5 18 146-163 84-101 (355)
316 2r8r_A Sensor protein; KDPD, P 57.8 11 0.00038 35.3 5.0 27 148-174 8-34 (228)
317 4eun_A Thermoresistant glucoki 57.6 5 0.00017 36.6 2.5 19 145-163 28-46 (200)
318 4fcw_A Chaperone protein CLPB; 57.5 5.4 0.00018 39.1 2.9 17 147-163 48-64 (311)
319 1w36_B RECB, exodeoxyribonucle 57.4 18 0.00061 42.9 7.8 61 148-209 18-78 (1180)
320 1s96_A Guanylate kinase, GMP k 57.3 5 0.00017 37.5 2.5 21 143-163 13-33 (219)
321 3ber_A Probable ATP-dependent 57.2 19 0.00066 33.9 6.8 68 362-433 110-192 (249)
322 2ius_A DNA translocase FTSK; n 57.2 13 0.00044 39.5 5.9 28 145-172 166-193 (512)
323 1z6g_A Guanylate kinase; struc 57.1 6.6 0.00023 36.5 3.3 20 144-163 21-40 (218)
324 2c9o_A RUVB-like 1; hexameric 57.0 4.6 0.00016 42.4 2.4 18 146-163 63-80 (456)
325 3kb2_A SPBC2 prophage-derived 56.7 4.7 0.00016 35.4 2.1 16 148-163 3-18 (173)
326 3crm_A TRNA delta(2)-isopenten 56.5 5.7 0.0002 39.5 2.9 16 148-163 7-22 (323)
327 1gku_B Reverse gyrase, TOP-RG; 56.4 13 0.00046 43.4 6.5 72 360-433 96-181 (1054)
328 1znw_A Guanylate kinase, GMP k 56.0 5.4 0.00018 36.6 2.5 22 142-163 16-37 (207)
329 3o8b_A HCV NS3 protease/helica 56.0 15 0.00051 40.4 6.3 67 186-266 395-461 (666)
330 4h1g_A Maltose binding protein 55.6 7.5 0.00025 43.4 4.0 25 139-163 454-480 (715)
331 3cm0_A Adenylate kinase; ATP-b 55.6 4 0.00014 36.5 1.5 19 145-163 3-21 (186)
332 3d8b_A Fidgetin-like protein 1 55.5 5 0.00017 40.5 2.4 18 146-163 117-134 (357)
333 1ex7_A Guanylate kinase; subst 55.5 6 0.0002 35.9 2.6 16 147-162 2-17 (186)
334 1knq_A Gluconate kinase; ALFA/ 55.3 4.7 0.00016 35.7 1.9 18 146-163 8-25 (175)
335 1xp8_A RECA protein, recombina 55.3 11 0.00039 38.1 5.0 27 145-171 73-99 (366)
336 1ixz_A ATP-dependent metallopr 55.1 5.1 0.00018 38.1 2.2 54 107-163 11-66 (254)
337 3d3q_A TRNA delta(2)-isopenten 54.9 5.1 0.00017 40.2 2.2 16 148-163 9-24 (340)
338 2gxq_A Heat resistant RNA depe 54.7 16 0.00054 33.0 5.5 68 362-433 71-150 (207)
339 3vkg_A Dynein heavy chain, cyt 54.7 9.9 0.00034 49.3 5.2 48 116-164 873-924 (3245)
340 4b4t_I 26S protease regulatory 54.0 5.4 0.00018 41.3 2.3 54 107-163 177-233 (437)
341 2r62_A Cell division protease 53.9 3.1 0.00011 39.9 0.4 18 146-163 44-61 (268)
342 2ykg_A Probable ATP-dependent 53.8 10 0.00035 41.9 4.8 74 188-267 399-485 (696)
343 4gl2_A Interferon-induced heli 53.7 7.5 0.00026 43.1 3.6 74 187-266 400-487 (699)
344 2r2a_A Uncharacterized protein 53.7 8.1 0.00028 35.4 3.2 22 148-169 7-28 (199)
345 3nwj_A ATSK2; P loop, shikimat 53.5 8.7 0.0003 36.6 3.6 20 144-163 46-65 (250)
346 1m7g_A Adenylylsulfate kinase; 53.3 8 0.00028 35.5 3.2 30 133-163 13-42 (211)
347 3bor_A Human initiation factor 53.1 16 0.00054 34.1 5.3 69 362-433 97-179 (237)
348 2iut_A DNA translocase FTSK; n 52.5 17 0.00058 39.0 5.9 28 146-173 214-241 (574)
349 1g8p_A Magnesium-chelatase 38 52.4 4.3 0.00015 40.5 1.3 18 146-163 45-62 (350)
350 3eiq_A Eukaryotic initiation f 52.3 9.3 0.00032 38.9 3.8 70 188-267 281-354 (414)
351 3t61_A Gluconokinase; PSI-biol 51.7 6.3 0.00021 35.9 2.2 17 147-163 19-35 (202)
352 2bdt_A BH3686; alpha-beta prot 51.7 6.4 0.00022 35.4 2.2 17 147-163 3-19 (189)
353 3cmw_A Protein RECA, recombina 51.7 11 0.00037 46.1 4.6 91 146-275 1431-1523(1706)
354 3eph_A TRNA isopentenyltransfe 51.6 5.8 0.0002 40.7 2.0 16 148-163 4-19 (409)
355 1tf7_A KAIC; homohexamer, hexa 51.4 68 0.0023 34.0 10.6 43 259-303 369-416 (525)
356 1ak2_A Adenylate kinase isoenz 51.2 6.6 0.00023 36.8 2.3 19 145-163 15-33 (233)
357 3hr8_A Protein RECA; alpha and 51.0 13 0.00045 37.4 4.6 26 145-171 60-85 (356)
358 1tev_A UMP-CMP kinase; ploop, 50.8 6.2 0.00021 35.4 1.9 18 146-163 3-20 (196)
359 1t6n_A Probable ATP-dependent 50.6 22 0.00074 32.5 5.8 67 364-433 83-164 (220)
360 3uie_A Adenylyl-sulfate kinase 50.2 6.4 0.00022 35.8 2.0 19 145-163 24-42 (200)
361 1nij_A Hypothetical protein YJ 50.2 11 0.00039 37.2 3.9 15 148-162 6-20 (318)
362 1gvn_B Zeta; postsegregational 50.0 6.7 0.00023 38.3 2.1 17 147-163 34-50 (287)
363 2c95_A Adenylate kinase 1; tra 50.0 7.2 0.00025 35.0 2.3 20 144-163 7-26 (196)
364 2zan_A Vacuolar protein sortin 50.0 6.8 0.00023 40.9 2.3 54 107-163 129-184 (444)
365 2x8a_A Nuclear valosin-contain 50.0 6.8 0.00023 37.9 2.2 52 109-163 7-61 (274)
366 1iy2_A ATP-dependent metallopr 49.9 6.9 0.00024 37.8 2.2 54 107-163 35-90 (278)
367 4akg_A Glutathione S-transfera 49.9 17 0.00059 46.6 6.3 49 116-165 890-942 (2695)
368 1f2t_A RAD50 ABC-ATPase; DNA d 49.8 7.5 0.00026 33.7 2.2 15 148-162 25-39 (149)
369 3pvs_A Replication-associated 49.6 6.8 0.00023 41.0 2.2 17 147-163 51-67 (447)
370 2va8_A SSO2462, SKI2-type heli 49.6 40 0.0014 37.3 8.8 74 189-268 254-363 (715)
371 2rhm_A Putative kinase; P-loop 48.8 6.8 0.00023 35.1 1.9 18 146-163 5-22 (193)
372 1in4_A RUVB, holliday junction 48.6 9.5 0.00033 38.0 3.1 17 147-163 52-68 (334)
373 2cvh_A DNA repair and recombin 48.5 10 0.00034 34.8 3.1 21 145-165 19-39 (220)
374 3kta_A Chromosome segregation 48.5 11 0.00039 33.3 3.3 16 148-163 28-43 (182)
375 1zuh_A Shikimate kinase; alpha 48.5 8.1 0.00028 33.8 2.3 18 147-164 8-25 (168)
376 4dzz_A Plasmid partitioning pr 48.3 42 0.0014 30.0 7.4 31 238-271 55-85 (206)
377 3c8u_A Fructokinase; YP_612366 48.2 7.1 0.00024 35.8 1.9 18 145-162 21-38 (208)
378 3qf7_A RAD50; ABC-ATPase, ATPa 48.1 7.5 0.00026 39.4 2.2 16 148-163 25-40 (365)
379 1via_A Shikimate kinase; struc 48.1 8.7 0.0003 33.9 2.4 17 147-163 5-21 (175)
380 2pl3_A Probable ATP-dependent 48.1 17 0.00059 33.7 4.7 67 362-433 96-177 (236)
381 3lnc_A Guanylate kinase, GMP k 48.0 7.4 0.00025 36.3 2.1 19 145-163 26-44 (231)
382 2v54_A DTMP kinase, thymidylat 48.0 8.8 0.0003 34.7 2.5 19 145-163 3-21 (204)
383 2bwj_A Adenylate kinase 5; pho 48.0 8 0.00027 34.8 2.2 19 145-163 11-29 (199)
384 3fb4_A Adenylate kinase; psych 47.8 7.9 0.00027 35.6 2.2 17 148-164 2-18 (216)
385 3pxg_A Negative regulator of g 47.5 11 0.00037 39.7 3.4 27 145-172 200-226 (468)
386 3iuy_A Probable ATP-dependent 47.3 14 0.00049 34.1 3.9 68 362-433 93-173 (228)
387 2pez_A Bifunctional 3'-phospho 47.0 8 0.00027 34.4 2.0 19 145-163 4-22 (179)
388 2v9p_A Replication protein E1; 47.0 12 0.00041 36.8 3.5 18 145-162 125-142 (305)
389 2iyv_A Shikimate kinase, SK; t 46.7 9.7 0.00033 33.9 2.6 17 147-163 3-19 (184)
390 1e6c_A Shikimate kinase; phosp 46.7 8.8 0.0003 33.6 2.3 17 147-163 3-19 (173)
391 1nks_A Adenylate kinase; therm 46.3 8 0.00027 34.5 1.9 16 148-163 3-18 (194)
392 3dl0_A Adenylate kinase; phosp 46.3 8.6 0.00029 35.3 2.2 17 148-164 2-18 (216)
393 1ye8_A Protein THEP1, hypothet 46.1 11 0.00039 33.7 2.9 30 259-288 97-128 (178)
394 1aky_A Adenylate kinase; ATP:A 46.1 9.7 0.00033 35.2 2.5 18 146-163 4-21 (220)
395 2i3b_A HCR-ntpase, human cance 45.9 13 0.00044 33.7 3.3 29 259-287 103-133 (189)
396 1wrb_A DJVLGB; RNA helicase, D 45.9 23 0.00078 33.3 5.2 67 363-433 100-180 (253)
397 1q57_A DNA primase/helicase; d 45.8 12 0.00041 39.7 3.5 26 145-170 241-266 (503)
398 1zd8_A GTP:AMP phosphotransfer 45.5 8.2 0.00028 35.9 1.9 18 146-163 7-24 (227)
399 2plr_A DTMP kinase, probable t 45.4 7.9 0.00027 35.2 1.8 19 145-163 3-21 (213)
400 3asz_A Uridine kinase; cytidin 45.2 7.8 0.00027 35.5 1.7 18 146-163 6-23 (211)
401 1qf9_A UMP/CMP kinase, protein 45.2 8.4 0.00029 34.4 1.9 16 148-163 8-23 (194)
402 1g41_A Heat shock protein HSLU 45.0 9.6 0.00033 39.7 2.5 18 146-163 50-67 (444)
403 1rj9_A FTSY, signal recognitio 44.9 24 0.00081 34.7 5.3 18 146-163 102-119 (304)
404 2yvu_A Probable adenylyl-sulfa 44.7 9 0.00031 34.2 2.0 20 145-164 12-31 (186)
405 2cdn_A Adenylate kinase; phosp 44.6 11 0.00037 34.2 2.5 18 146-163 20-37 (201)
406 1vec_A ATP-dependent RNA helic 44.5 26 0.0009 31.5 5.3 68 362-433 70-152 (206)
407 3tif_A Uncharacterized ABC tra 44.4 10 0.00036 35.7 2.4 17 145-161 30-46 (235)
408 3b9q_A Chloroplast SRP recepto 44.3 21 0.00074 34.9 4.8 20 145-164 99-118 (302)
409 1ukz_A Uridylate kinase; trans 44.2 9.7 0.00033 34.5 2.2 17 147-163 16-32 (203)
410 1zu4_A FTSY; GTPase, signal re 44.2 21 0.00073 35.3 4.8 20 145-164 104-123 (320)
411 2ce7_A Cell division protein F 44.2 9.3 0.00032 40.3 2.2 17 147-163 50-66 (476)
412 1sxj_C Activator 1 40 kDa subu 43.9 19 0.00066 35.7 4.5 15 149-163 49-63 (340)
413 1cke_A CK, MSSA, protein (cyti 43.9 11 0.00037 34.8 2.5 17 147-163 6-22 (227)
414 3f9v_A Minichromosome maintena 43.9 9 0.00031 41.7 2.1 15 148-162 329-343 (595)
415 1v5w_A DMC1, meiotic recombina 43.8 15 0.00052 36.8 3.7 23 146-168 122-144 (343)
416 3p32_A Probable GTPase RV1496/ 43.8 1.9E+02 0.0064 28.6 12.0 18 147-164 80-97 (355)
417 2pt5_A Shikimate kinase, SK; a 43.7 10 0.00036 33.0 2.2 16 148-163 2-17 (168)
418 1zak_A Adenylate kinase; ATP:A 43.7 10 0.00035 35.0 2.3 18 146-163 5-22 (222)
419 1jjv_A Dephospho-COA kinase; P 43.4 10 0.00034 34.5 2.2 16 148-163 4-19 (206)
420 2z83_A Helicase/nucleoside tri 43.3 19 0.00066 37.5 4.6 68 187-266 190-258 (459)
421 2vli_A Antibiotic resistance p 43.0 9.2 0.00032 33.9 1.8 18 146-163 5-22 (183)
422 2if2_A Dephospho-COA kinase; a 43.0 9.6 0.00033 34.6 1.9 16 148-163 3-18 (204)
423 2jaq_A Deoxyguanosine kinase; 42.6 11 0.00037 34.0 2.2 16 148-163 2-17 (205)
424 4a74_A DNA repair and recombin 42.5 11 0.00037 34.8 2.3 19 145-163 24-42 (231)
425 3a4m_A L-seryl-tRNA(SEC) kinas 42.4 11 0.00036 36.1 2.2 17 147-163 5-21 (260)
426 3fmp_B ATP-dependent RNA helic 42.2 5.3 0.00018 42.0 0.0 70 187-266 333-406 (479)
427 1qde_A EIF4A, translation init 42.2 28 0.00094 31.9 5.1 67 362-433 81-161 (224)
428 3ly5_A ATP-dependent RNA helic 42.2 31 0.0011 32.8 5.5 68 362-433 125-207 (262)
429 2bbw_A Adenylate kinase 4, AK4 42.1 11 0.00037 35.6 2.2 18 146-163 27-44 (246)
430 2oxc_A Probable ATP-dependent 41.6 21 0.00073 33.0 4.2 67 362-433 91-172 (230)
431 2pbr_A DTMP kinase, thymidylat 41.4 11 0.00039 33.6 2.2 15 149-163 3-17 (195)
432 4ehx_A Tetraacyldisaccharide 4 41.4 36 0.0012 33.6 5.9 109 149-268 38-156 (315)
433 3m6a_A ATP-dependent protease 41.4 11 0.00038 40.4 2.4 19 145-163 107-125 (543)
434 3auy_A DNA double-strand break 41.3 10 0.00034 38.5 1.9 16 148-163 27-42 (371)
435 3sr0_A Adenylate kinase; phosp 41.3 14 0.00049 33.9 2.8 17 148-164 2-18 (206)
436 3dkp_A Probable ATP-dependent 41.2 11 0.00036 35.5 2.0 69 362-433 97-181 (245)
437 3io5_A Recombination and repai 41.2 18 0.00063 35.8 3.7 41 148-199 30-70 (333)
438 2wwf_A Thymidilate kinase, put 41.1 11 0.00039 34.2 2.1 19 145-163 9-27 (212)
439 2qt1_A Nicotinamide riboside k 40.9 11 0.00038 34.3 2.0 19 145-163 20-38 (207)
440 1htw_A HI0065; nucleotide-bind 40.9 17 0.00057 31.8 3.1 26 145-172 32-57 (158)
441 2z0h_A DTMP kinase, thymidylat 40.7 12 0.00041 33.6 2.2 16 149-164 3-18 (197)
442 2f1r_A Molybdopterin-guanine d 40.6 9 0.00031 34.1 1.3 16 148-163 4-19 (171)
443 1nn5_A Similar to deoxythymidy 40.4 12 0.00041 34.1 2.2 20 145-164 8-27 (215)
444 2cbz_A Multidrug resistance-as 40.3 13 0.00045 35.0 2.4 17 145-161 30-46 (237)
445 3euj_A Chromosome partition pr 40.1 19 0.00064 38.0 3.8 37 260-301 413-449 (483)
446 1sgw_A Putative ABC transporte 40.0 15 0.0005 34.1 2.7 18 145-162 34-51 (214)
447 4e22_A Cytidylate kinase; P-lo 39.7 13 0.00046 35.2 2.5 19 145-163 26-44 (252)
448 1e4v_A Adenylate kinase; trans 39.6 11 0.00039 34.5 1.9 16 148-163 2-17 (214)
449 3be4_A Adenylate kinase; malar 39.5 13 0.00044 34.3 2.2 18 146-163 5-22 (217)
450 3tlx_A Adenylate kinase 2; str 39.5 14 0.00049 34.8 2.6 19 145-163 28-46 (243)
451 2i1q_A DNA repair and recombin 39.4 16 0.00055 36.0 3.1 24 145-168 97-120 (322)
452 2xb4_A Adenylate kinase; ATP-b 39.4 13 0.00044 34.5 2.2 16 148-163 2-17 (223)
453 3umf_A Adenylate kinase; rossm 39.4 16 0.00055 33.9 2.8 20 145-164 28-47 (217)
454 1z5z_A Helicase of the SNF2/RA 39.3 83 0.0028 30.0 8.1 93 154-268 92-190 (271)
455 2og2_A Putative signal recogni 39.2 28 0.00095 35.1 4.8 19 146-164 157-175 (359)
456 3pxi_A Negative regulator of g 39.1 16 0.00056 40.9 3.4 26 145-171 200-225 (758)
457 3qks_A DNA double-strand break 39.1 13 0.00045 33.9 2.2 16 148-163 25-40 (203)
458 3cmw_A Protein RECA, recombina 38.9 34 0.0012 41.8 6.2 30 145-174 33-62 (1706)
459 4akg_A Glutathione S-transfera 38.8 13 0.00043 47.8 2.6 21 143-163 1264-1284(2695)
460 3dmq_A RNA polymerase-associat 38.8 54 0.0018 37.9 7.8 74 189-271 505-584 (968)
461 2zj8_A DNA helicase, putative 38.6 41 0.0014 37.3 6.6 72 189-266 239-343 (720)
462 4a2p_A RIG-I, retinoic acid in 38.4 51 0.0018 34.8 7.2 74 188-267 391-477 (556)
463 2pze_A Cystic fibrosis transme 38.4 15 0.00051 34.4 2.5 18 145-162 33-50 (229)
464 4anj_A Unconventional myosin-V 38.4 34 0.0012 39.6 5.9 55 109-163 98-161 (1052)
465 2p5t_B PEZT; postsegregational 38.3 10 0.00036 36.0 1.4 17 147-163 33-49 (253)
466 1uf9_A TT1252 protein; P-loop, 38.2 13 0.00043 33.6 1.9 16 148-163 10-25 (203)
467 1rz3_A Hypothetical protein rb 38.1 13 0.00044 33.8 1.9 17 147-163 23-39 (201)
468 3gfo_A Cobalt import ATP-bindi 38.0 15 0.00051 35.6 2.4 17 145-161 33-49 (275)
469 1vht_A Dephospho-COA kinase; s 37.8 14 0.00048 33.9 2.2 17 147-163 5-21 (218)
470 1xjc_A MOBB protein homolog; s 37.8 40 0.0014 29.8 5.1 23 148-171 6-28 (169)
471 2ff7_A Alpha-hemolysin translo 37.7 15 0.00052 34.8 2.4 18 145-162 34-51 (247)
472 2ghi_A Transport protein; mult 37.6 15 0.00052 35.1 2.4 18 145-162 45-62 (260)
473 4a2w_A RIG-I, retinoic acid in 37.6 63 0.0021 37.2 8.0 76 187-268 631-719 (936)
474 2v3c_C SRP54, signal recogniti 37.2 22 0.00075 36.9 3.8 19 147-165 100-118 (432)
475 2dhr_A FTSH; AAA+ protein, hex 36.7 14 0.00047 39.2 2.1 17 147-163 65-81 (499)
476 2p6r_A Afuhel308 helicase; pro 36.6 50 0.0017 36.4 6.9 73 189-267 244-346 (702)
477 1ji0_A ABC transporter; ATP bi 36.6 16 0.00055 34.4 2.4 18 145-162 31-48 (240)
478 1g6h_A High-affinity branched- 36.5 16 0.00055 34.8 2.4 17 145-161 32-48 (257)
479 4g1u_C Hemin import ATP-bindin 36.2 17 0.00057 35.0 2.5 17 145-161 36-52 (266)
480 2vhj_A Ntpase P4, P4; non- hyd 36.1 19 0.00064 35.8 2.8 21 145-165 122-142 (331)
481 1j8m_F SRP54, signal recogniti 36.0 31 0.001 33.7 4.4 20 146-165 98-117 (297)
482 1b0u_A Histidine permease; ABC 35.9 17 0.00058 34.8 2.5 18 145-162 31-48 (262)
483 3tqc_A Pantothenate kinase; bi 35.9 37 0.0013 33.5 5.0 23 148-172 94-116 (321)
484 2pcj_A ABC transporter, lipopr 35.9 16 0.00054 34.1 2.2 17 145-161 29-45 (224)
485 2xxa_A Signal recognition part 35.8 35 0.0012 35.3 5.0 21 147-167 101-121 (433)
486 1odf_A YGR205W, hypothetical 3 35.7 16 0.00054 35.7 2.2 16 148-163 33-48 (290)
487 1mv5_A LMRA, multidrug resista 35.4 15 0.00051 34.7 2.0 18 145-162 27-44 (243)
488 2zu0_C Probable ATP-dependent 35.3 18 0.0006 34.8 2.5 18 145-162 45-62 (267)
489 2grj_A Dephospho-COA kinase; T 35.2 17 0.00057 33.0 2.2 16 148-163 14-29 (192)
490 2d2e_A SUFC protein; ABC-ATPas 35.1 18 0.0006 34.4 2.4 18 145-162 28-45 (250)
491 1ltq_A Polynucleotide kinase; 35.1 16 0.00055 35.5 2.2 16 148-163 4-19 (301)
492 3lwd_A 6-phosphogluconolactona 35.1 61 0.0021 30.1 6.2 28 244-271 44-71 (226)
493 1vpl_A ABC transporter, ATP-bi 35.0 18 0.00062 34.5 2.5 18 145-162 40-57 (256)
494 3nh6_A ATP-binding cassette SU 34.9 16 0.00055 35.9 2.2 18 145-162 79-96 (306)
495 3nzo_A UDP-N-acetylglucosamine 34.8 3.2E+02 0.011 27.3 12.3 92 137-246 26-121 (399)
496 2qi9_C Vitamin B12 import ATP- 34.7 18 0.00063 34.3 2.5 18 145-162 25-42 (249)
497 4a2q_A RIG-I, retinoic acid in 34.6 64 0.0022 36.2 7.4 75 188-268 632-719 (797)
498 1ypw_A Transitional endoplasmi 34.5 15 0.0005 41.6 2.0 19 145-163 237-255 (806)
499 2nq2_C Hypothetical ABC transp 34.4 18 0.00063 34.4 2.4 18 145-162 30-47 (253)
500 2yz2_A Putative ABC transporte 34.3 18 0.00063 34.6 2.4 18 145-162 32-49 (266)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-63 Score=538.00 Aligned_cols=361 Identities=34% Similarity=0.544 Sum_probs=323.1
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|+++.+...... ....
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-----~~~~ 128 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-----LELG 128 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-----CCTT
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-----cccC
Confidence 34679999999999999999999999999999999999999999999999999999999999998765321 1235
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
++++|||+|||+||.|+++++.+++...++++.+++||.+...+...+..+++|+|+|||+|++++.++.+.++++++||
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 67899999999999999999999998888999999999999999888889999999999999999999888899999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||||+|++++|...+..|+..+.....+|+++||||+|..+..++..++ .++..+.+... .....++.+.++.+..
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~--~~~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL-KNYVFVAIGIV--GGACSDVKQTIYEVNK 285 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC-SSCEEEEESST--TCCCTTEEEEEEECCG
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc-cCCEEEEeccc--cccccccceEEEEeCc
Confidence 99999999999999999999987544478999999999999999999998 46666554332 3455678888888888
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
..+...+..++.... .++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++||
T Consensus 286 ~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rG 363 (434)
T 2db3_A 286 YAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 363 (434)
T ss_dssp GGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCC
Confidence 888888888888763 349999999999999999997 57789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHh
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERES 477 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~ 477 (620)
||+|+|++|||||+|.+..+|+||+|||||+|+.|.|++|+++. ...+..+.+.+
T Consensus 364 lDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred CCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999965 44555555544
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.4e-59 Score=499.97 Aligned_cols=370 Identities=34% Similarity=0.517 Sum_probs=321.6
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCC-------
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA------- 178 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~------- 178 (620)
.+..+|+++++++.++++|...||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+.......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 3345799999999999999999999999999999999999999999999999999999999999876532110
Q ss_pred -cccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc
Q 007044 179 -SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257 (620)
Q Consensus 179 -~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~ 257 (620)
........++++||++|||+||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++.++.+
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 0000112357899999999999999999999998889999999999999988888888999999999999999999888
Q ss_pred cCCCccEEEeccchhhhhcCcHHHHHHHHHhc--cccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCccccccc
Q 007044 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKV--EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335 (620)
Q Consensus 258 ~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~--~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 335 (620)
.+.++++||+||||++++++|...+..++... +.....|+++||||+|..+..+...++ ..+..+.+.. ......
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~ 248 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL-DEYIFLAVGR--VGSTSE 248 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC------CCS
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEeCC--CCCCcc
Confidence 89999999999999999999999999999853 322357999999999999999988888 4555554432 234556
Q ss_pred ceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCce
Q 007044 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (620)
Q Consensus 336 ~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~ 411 (620)
++.+.++.+....+...+..++.....++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 7888888888888889999999887778899999999999999999996 577899999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhC
Q 007044 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESG 478 (620)
Q Consensus 412 vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~ 478 (620)
|||||+++++|||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++. ...+..+.+.++
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 777777776653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.2e-59 Score=500.15 Aligned_cols=366 Identities=30% Similarity=0.465 Sum_probs=327.0
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|+++++++.++++|...||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+... ..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----------~~ 104 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----------VR 104 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----------SC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----------cC
Confidence 34579999999999999999999999999999999999999999999999999999999999887532 23
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
++++||++||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.++.+.+.++++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 45799999999999999999999998889999999999999988888888899999999999999999888899999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||||+|++++|...+..++..++. ..|+++||||++..+..+...++ .++..+.+. ........+.+.+..+..
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPP--ATQVVLISATLPHEILEMTNKFM-TDPIRILVK--RDELTLEGIKQFFVAVER 259 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCT--TCEEEEEESCCCHHHHTTGGGTC-SSCEEECCC--GGGCSCTTEEEEEEEESS
T ss_pred EccHHHHHhhhhHHHHHHHHHhCcc--CceEEEEEcCCCHHHHHHHHHHc-CCCEEEEec--CccccCCCceEEEEEeCc
Confidence 9999999999999999999998876 68999999999998888777777 344444332 223445567777776655
Q ss_pred hh-hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccc
Q 007044 347 SA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (620)
Q Consensus 347 ~~-~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~r 421 (620)
.. +...+..++... ..+++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 260 ~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 260 EEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp TTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HHhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 44 777888888776 45799999999999999999987 5778999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCC
Q 007044 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (620)
Q Consensus 422 GlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~ 488 (620)
|+|+|++++||+||+|++...|+||+||+||.|+.|.|++|+++. ...+..+++.++..+++++.+.
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 999999999999999999999999999999999999999999998 8889999999999999887543
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.1e-58 Score=514.94 Aligned_cols=432 Identities=27% Similarity=0.420 Sum_probs=335.4
Q ss_pred CCCCccccCC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCc
Q 007044 106 EHPNAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179 (620)
Q Consensus 106 ~~~~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~ 179 (620)
..+..|+++. |+++++++|...||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++.+......
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-- 91 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-- 91 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--
Confidence 3445566554 99999999999999999999999999999 789999999999999999999999998775421
Q ss_pred ccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhc----CCCceEEEEeCCcchHHHHHHhc-CCCcEEEeChHHHHHHHhc
Q 007044 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG----AVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIER 254 (620)
Q Consensus 180 ~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~----~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~ 254 (620)
...++++|||+||++||.|+++.+..++. ...+.+..++||.....+...+. .+++|+|+||++|.+++.+
T Consensus 92 ----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~ 167 (579)
T 3sqw_A 92 ----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK 167 (579)
T ss_dssp ----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred ----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHh
Confidence 13467899999999999999999998753 23577889999999888877764 4799999999999999976
Q ss_pred C-CccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccC-----CceEEeecCCCChHHHHHHHHhcccCCcEEEEec-
Q 007044 255 G-NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-----KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG- 327 (620)
Q Consensus 255 ~-~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~-----~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~- 327 (620)
. ...++.+++|||||||+|++++|..++..|+..++... .+|+++||||+++.+..++..++ ..+..+.+..
T Consensus 168 ~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l-~~~~~~~~~~~ 246 (579)
T 3sqw_A 168 YSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM-NKKECLFLDTV 246 (579)
T ss_dssp HHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC-CSSEEEEEESS
T ss_pred ccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHc-CCCceEEEeec
Confidence 4 45688999999999999999999999999988875422 57999999999999999988888 4555444432
Q ss_pred -CcccccccceEEEEEeCCch--hhhhhH---HHHHHhcCCCCeEEEEEcccccHHHHHHhcc-------cchhhccccc
Q 007044 328 -NEKMKASTNVRHIVLPCSSS--ARSQVI---PDIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQ 394 (620)
Q Consensus 328 -~~~~~~~~~i~~~~~~~~~~--~~~~~l---~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~ 394 (620)
.........+.+.+..+... .....+ ...+.....+.++||||+|+..++.++..|. .+..+||+|+
T Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 247 DKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp CSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred CccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 22233445566655554432 222333 3333333467899999999999999999886 4567999999
Q ss_pred hHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHH
Q 007044 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473 (620)
Q Consensus 395 ~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i 473 (620)
+.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+. ...++.+
T Consensus 327 ~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 406 (579)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8889999
Q ss_pred HHHhCCCceeeCCCCHHHHHHHHhHHHH----HHhhhhcCCCchHHHHHHHHHHhccCCCHHHHHHHHHHHHcCCc
Q 007044 474 ERESGVKFEHISAPQPADIAKAAGVEAA----ETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYT 545 (620)
Q Consensus 474 ~~~~~~~~~~~~~p~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 545 (620)
++..+..+.....+.+.+.........+ +.+..........|+..+..+.-.. .+....+|++++.+++..
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 481 (579)
T 3sqw_A 407 EDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSE-RRILPEIASTYGVLLNDP 481 (579)
T ss_dssp HHHHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCT
T ss_pred HHHhCCCcccccCCCccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHhCCC
Confidence 9999888876654333222111111111 1111111234445555555442221 133456788888887776
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.1e-57 Score=480.76 Aligned_cols=364 Identities=30% Similarity=0.476 Sum_probs=326.1
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|+++++++.++++|.+.||..|+|+|.++++.++.|+++++++|||||||++|++|++..+... ..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----------~~ 88 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----------LN 88 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----------SC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc----------cC
Confidence 34679999999999999999999999999999999999999999999999999999999999887643 13
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
++++||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.++...+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 45699999999999999999999998889999999999998888777888899999999999999988888899999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||||++.+.+|...+..++..++. ..|+++||||+|..+......++. .+..+.+.. .....++.+.+..+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPP--THQSLLFSATFPLTVKEFMVKHLH-KPYEINLME---ELTLKGITQYYAFVEE 242 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHCS-SCEEESCCS---SCBCTTEEEEEEECCG
T ss_pred EeCchHhhhhchHHHHHHHHHhCCc--CceEEEEEecCCHHHHHHHHHHcC-CCeEEEecc---ccccCCceeEEEEech
Confidence 9999999998999999999988876 689999999999998888888873 444443322 2344567778888888
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
..+...+..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 243 ~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321 (400)
T ss_dssp GGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSS
T ss_pred hhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Confidence 88888888888876 56899999999999999999987 57789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
+|+|++++||+|++|++...|+||+||+||.|+.|.|++|+++. ...+..+++.++..++.++..
T Consensus 322 idip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 322 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999 788999999999999887643
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3e-59 Score=510.49 Aligned_cols=367 Identities=30% Similarity=0.448 Sum_probs=175.5
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
...|.+++|++.++++|.++||..|+|+|.++++.++.+ +|+|++||||||||++|++|+++.+....
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~---------- 160 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---------- 160 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS----------
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC----------
Confidence 457999999999999999999999999999999999987 99999999999999999999998876542
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCcc
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~ 263 (620)
.++++|||+||++||.|+++.+..++... ++.+...+++...... ...+++|+|+||++|++++.+ +.+.+.+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCC
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCC
Confidence 45679999999999999999999888753 6778888887654432 234679999999999999965 567789999
Q ss_pred EEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 264 ~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
+||+||||+|++ .+|...+..++..++. .+|+++||||++..+..++..++ .++..+.+... ......+.+.++
T Consensus 238 ~iViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~~~~~~~~~ 312 (479)
T 3fmp_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKRE--EETLDTIKQYYV 312 (479)
T ss_dssp EEEECCHHHHHTSTTHHHHHHHHHTTSCT--TSEEEEEESCCCHHHHHHHHHHS-SSEEEEEEC----------------
T ss_pred EEEEECHHHHhhcCCcHHHHHHHHhhCCc--cceEEEEeCCCCHHHHHHHHHHc-CCCeEEecccc--ccCcCCceEEEE
Confidence 999999999997 6888888889888876 78999999999999999999888 56666665443 234455666665
Q ss_pred eCCc-hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecc
Q 007044 343 PCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (620)
Q Consensus 343 ~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd 417 (620)
.+.. ..+...+..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 313 ~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 313 LCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 5543 45666677766655 45799999999999999999997 677899999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEcCCCC------CHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCceeeCCCCH
Q 007044 418 VAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQP 489 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~------s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~p~~ 489 (620)
++++|||+|++++||+||+|. +...|+||+|||||+|+.|.|++|+++. ...+..+++.++..+..+..+..
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 471 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 471 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccH
Confidence 999999999999999999994 6789999999999999999999999876 67788999999988888877666
Q ss_pred HHHH
Q 007044 490 ADIA 493 (620)
Q Consensus 490 ~~i~ 493 (620)
+++.
T Consensus 472 ~~~e 475 (479)
T 3fmp_B 472 DEIE 475 (479)
T ss_dssp ----
T ss_pred HHHH
Confidence 5554
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.7e-57 Score=483.64 Aligned_cols=365 Identities=30% Similarity=0.487 Sum_probs=309.8
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|+++++++.+++.|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+.... .
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----------~ 107 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----------K 107 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----------C
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----------C
Confidence 346799999999999999999999999999999999999999999999999999999999999876532 3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
+.++||++||++|+.|+++.+..++...++.+...+||.....+...+. .+++|+|+||++|.+++.++.+.+.++++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 4569999999999999999999999888999999999998888777766 679999999999999999988889999999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
|+||||++++++|...+..++..++. ..|+++||||++..+..+...++ .++..+.... .......+.+.+..+.
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 262 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNS--NTQVVLLSATMPSDVLEVTKKFM-RDPIRILVKK--EELTLEGIRQFYINVE 262 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCT--TCEEEEECSCCCHHHHHHHTTTC-SSCEEECCCC--CCCCTTSCCEEEEECS
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHc-CCCEEEEecC--CccCCCCceEEEEEeC
Confidence 99999999999999999999999876 78999999999999988888887 3454443322 2344556666666655
Q ss_pred ch-hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccc
Q 007044 346 SS-ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (620)
Q Consensus 346 ~~-~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~ 420 (620)
.. .+...+..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|..+|||||++++
T Consensus 263 ~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 263 REEWKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp SSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred hHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 44 4777788888776 56799999999999999999996 577899999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 421 rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
+|||+|++++||+|++|.+...|+||+||+||.|+.|.|++|+++. ...+..+++.++..+++++..
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 9999999999999999999999999999999999999999999999 888999999999998887543
No 8
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.5e-57 Score=504.22 Aligned_cols=370 Identities=28% Similarity=0.454 Sum_probs=307.3
Q ss_pred CccccCC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccC
Q 007044 109 NAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (620)
Q Consensus 109 ~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 182 (620)
..|.++. |++.++++|...||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+......
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----- 142 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----- 142 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-----
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-----
Confidence 3455553 99999999999999999999999999999 679999999999999999999999998775421
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHHHhhcC----CCceEEEEeCCcchHHHHHHh-cCCCcEEEeChHHHHHHHhcC-C
Q 007044 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGA----VGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERG-N 256 (620)
Q Consensus 183 ~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~----~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~-~ 256 (620)
...++++|||+||++||.|+++.+..+... ..+.+..++||.....+...+ ..+++|+|+||++|.+++.+. .
T Consensus 143 -~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 221 (563)
T 3i5x_A 143 -SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSN 221 (563)
T ss_dssp -STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred -ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccc
Confidence 124568999999999999999999886432 346788999999888877666 457999999999999999764 3
Q ss_pred ccCCCccEEEeccchhhhhcCcHHHHHHHHHhcccc-----CCceEEeecCCCChHHHHHHHHhcccCCcEEEEecC--c
Q 007044 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN--E 329 (620)
Q Consensus 257 ~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~-----~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~--~ 329 (620)
..++.+++|||||||+|++++|...+..++..++.. ..+|+++||||+++.+..++..++. .+..+.+... .
T Consensus 222 ~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 300 (563)
T 3i5x_A 222 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKN 300 (563)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSS
T ss_pred cccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcC-CCceEEEeccCCC
Confidence 468889999999999999999999999998877432 2579999999999999998888883 4444443322 2
Q ss_pred ccccccceEEEEEeCCch--hhhhhHH---HHHHhcCCCCeEEEEEcccccHHHHHHhcc-------cchhhccccchHH
Q 007044 330 KMKASTNVRHIVLPCSSS--ARSQVIP---DIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQ 397 (620)
Q Consensus 330 ~~~~~~~i~~~~~~~~~~--~~~~~l~---~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~ 397 (620)
.......+.+.+...... .....+. ..+.....+.++||||+|+..++.++..|. .+..+||+|++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 301 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred CccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 233444556655554432 2222233 333333467899999999999999999886 4667999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHH
Q 007044 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (620)
Q Consensus 398 R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~ 476 (620)
|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+. ...++.+++.
T Consensus 381 R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 381 RTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 8889999999
Q ss_pred hCCCceeeC
Q 007044 477 SGVKFEHIS 485 (620)
Q Consensus 477 ~~~~~~~~~ 485 (620)
.+..+....
T Consensus 461 ~~~~~~~~~ 469 (563)
T 3i5x_A 461 KNIVIAKQE 469 (563)
T ss_dssp HCCCCCEEE
T ss_pred hCCCccccc
Confidence 888887665
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.7e-56 Score=472.20 Aligned_cols=365 Identities=26% Similarity=0.420 Sum_probs=322.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|+++++++.++++|.+.||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... .+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----------~~ 76 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----------GQ 76 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----------TC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----------CC
Confidence 35799999999999999999999999999999999999999999999999999999999998875432 34
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcC-CCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
+++||++||++|+.|+++.+..+.... ++++..++|+.....+...+.. .++|+|+||++|.+++.++.+.+.++++|
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~v 156 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 156 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEE
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEE
Confidence 579999999999999999999988765 7999999999988777666654 48999999999999999888889999999
Q ss_pred Eeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC
Q 007044 266 VLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (620)
Q Consensus 266 VlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (620)
|+||||++++ .+|...+..++...+. ..|+++||||++..+..+...++ ..+..+.+... .......+.+.+..+
T Consensus 157 ViDEaH~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 232 (391)
T 1xti_A 157 ILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEIFVDDE-TKLTLHGLQQYYVKL 232 (391)
T ss_dssp EECSHHHHTSSHHHHHHHHHHHHTSCS--SSEEEEEESSCCSTHHHHHHHHC-SSCEEEECCCC-CCCCCTTCEEEEEEC
T ss_pred EEeCHHHHhhccchHHHHHHHHhhCCC--CceEEEEEeeCCHHHHHHHHHHc-CCCeEEEecCc-cccCcccceEEEEEc
Confidence 9999999987 4788889999988876 68999999999999988888888 45555544332 223445677888888
Q ss_pred CchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccc
Q 007044 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (620)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~ 420 (620)
....+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 233 ~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 311 (391)
T 1xti_A 233 KDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 311 (391)
T ss_dssp CGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCS
T ss_pred CchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhh
Confidence 8888888888888876 67899999999999999999996 567899999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCceeeCCC
Q 007044 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 421 rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~p 487 (620)
+|+|+|++++||+|++|++...|+||+||+||.|+.|.|++|+++. ...+..+++.++..+++++..
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999999999999987 567889999999998877643
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8.5e-56 Score=473.43 Aligned_cols=368 Identities=30% Similarity=0.447 Sum_probs=312.6
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
....|+++++++.++++|.+.||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+....
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------- 93 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------- 93 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---------
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---------
Confidence 3567999999999999999999999999999999999987 99999999999999999999999886542
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l 262 (620)
.++++||++||++|+.|+++.+..++... ++.+....++...... ...+++|+|+||++|.+++.+ +.+.+.++
T Consensus 94 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 94 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 45579999999999999999999987763 6788888887765432 244689999999999999965 56778999
Q ss_pred cEEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEE
Q 007044 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (620)
Q Consensus 263 ~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 341 (620)
++||+||||++++ .++...+..++..++. ++|+++||||++..+..+...++ .++..+.+... ......+.+.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~ 244 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKRE--EETLDTIKQYY 244 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEECCCGG--GSSCTTEEEEE
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCC--CceEEEEEeecCHHHHHHHHHhc-CCCeEEeeccc--cccccCceEEE
Confidence 9999999999987 6888888889888876 78999999999999999998888 45665544332 34455667766
Q ss_pred EeCCc-hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEec
Q 007044 342 LPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (620)
Q Consensus 342 ~~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT 416 (620)
+.+.. ..+...+..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 245 VLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 323 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EEcCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 66554 45677777777766 56899999999999999999997 57789999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCC------CCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCceeeCCCC
Q 007044 417 NVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQ 488 (620)
Q Consensus 417 dv~~rGlDi~~v~~VI~~d~P------~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~p~ 488 (620)
+++++|||+|++++||+||+| .+...|+||+||+||.|+.|.|++|+++. ...+..+++..+..++++..+.
T Consensus 324 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 324 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp GGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999999999999999999999 56799999999999999999999999977 6778999999999999998877
Q ss_pred HHHHH
Q 007044 489 PADIA 493 (620)
Q Consensus 489 ~~~i~ 493 (620)
.+++.
T Consensus 404 ~~~~~ 408 (412)
T 3fht_A 404 LDEIE 408 (412)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.7e-55 Score=466.53 Aligned_cols=367 Identities=28% Similarity=0.465 Sum_probs=319.7
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
..+|++++|++.++++|.+.||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+... .
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~----------~ 73 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE----------D 73 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----------C
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC----------C
Confidence 467999999999999999999999999999999999988 9999999999999999999999887653 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
.++++||++||++|+.|+++.+..++...++.+...+++..... ...+++|+|+||++|.+++.++.+.+.++++|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 34579999999999999999999999888898888888764332 23468999999999999999888889999999
Q ss_pred Eeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC
Q 007044 266 VLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (620)
Q Consensus 266 VlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (620)
|+||||++.+ .++...+..+...++. ..|+++||||+++.+..+...++ ..+..+.+.. .......+.+.+..+
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPK--DTQLVLFSATFADAVRQYAKKIV-PNANTLELQT--NEVNVDAIKQLYMDC 224 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-CSCEEECCCG--GGCSCTTEEEEEEEC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCC--CcEEEEEEecCCHHHHHHHHHhC-CCCeEEEccc--cccccccccEEEEEc
Confidence 9999999988 7888889999988876 68999999999999999888887 4555554433 234455667777666
Q ss_pred C-chhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccc
Q 007044 345 S-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 345 ~-~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
. ...+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 225 ~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 225 KNEADKFDVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp SSHHHHHHHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred CchHHHHHHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 4 345666777777665 56899999999999999999997 67789999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCC------CHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhC-CCceeeCCCCHH
Q 007044 420 ARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESG-VKFEHISAPQPA 490 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~------s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~-~~~~~~~~p~~~ 490 (620)
++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.|++|+.+. ...+..+++..+ ..+.+++.+..+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 383 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWD 383 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHH
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHH
Confidence 9999999999999999999 9999999999999999999999999876 677889999988 888888888877
Q ss_pred HHHH
Q 007044 491 DIAK 494 (620)
Q Consensus 491 ~i~~ 494 (620)
.+.+
T Consensus 384 ~~~~ 387 (395)
T 3pey_A 384 EVEK 387 (395)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-55 Score=459.72 Aligned_cols=356 Identities=35% Similarity=0.594 Sum_probs=317.9
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
..+|+++++++.++++|.+.||..|+|+|.++++.++++ +++++++|||||||++|++|++..+... .
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----------~ 73 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----------N 73 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----------S
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----------C
Confidence 356999999999999999999999999999999999988 7999999999999999999999877542 3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
++++||++||++|+.|+++.+..+....++.+..++|+.....+...+. +++|+|+||++|.+++.++.+.+.++++||
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEE
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEE
Confidence 4569999999999999999999998888899999999998877666555 699999999999999998888899999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||||++.+++|...+..++..++. ..++++||||++.........++ .++..+.. ....++.+.++.+..
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~ 223 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNK--DKRILLFSATMPREILNLAKKYM-GDYSFIKA------KINANIEQSYVEVNE 223 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCS--SCEEEEECSSCCHHHHHHHHHHC-CSEEEEEC------CSSSSSEEEEEECCG
T ss_pred EeCchHhhhhchHHHHHHHHHhCCC--CceEEEEeeccCHHHHHHHHHHc-CCCeEEEe------cCCCCceEEEEEeCh
Confidence 9999999999999999999988866 68999999999999888888887 34444332 123367777888888
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
..+...+..++. ..+.++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 224 ~~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 301 (367)
T 1hv8_A 224 NERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301 (367)
T ss_dssp GGHHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHH
T ss_pred HHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 888888877776 356899999999999999999997 57789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCC
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~ 486 (620)
+|+|++++||+|++|+++.+|+||+||+||.|+.|.|++++++. ...+..+++..+.+++++..
T Consensus 302 id~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 302 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp CCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred CCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 99999999999999999999999999999999999999999999 78899999999999887653
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.2e-56 Score=473.84 Aligned_cols=363 Identities=28% Similarity=0.464 Sum_probs=183.8
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|+++++++.+++.|...||..|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+... ..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----------~~~ 89 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------VKA 89 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------CCS
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----------CCC
Confidence 4569999999999999999999999999999999999999999999999999999999999887653 245
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
+++||++||++|+.|+++.+..++...++.+..++|+.....+...+. +++|+|+||++|.+.+.++.+.+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 679999999999999999999998888999999999998776655554 6899999999999999988888999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||||++.+.+|...+..++..++. ..|+++||||++..+..+...++ ..+..+..... ......+.+.+..+...
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKKD--ELTLEGIKQFYVNVEEE 243 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-CSCEEEEECC--------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCC--CceEEEEEEecCHHHHHHHHHhc-CCCeEEEecCc--cccCCCceEEEEEcCch
Confidence 999999999999999999998876 68999999999999888888888 45555544332 22334455555544443
Q ss_pred h-hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
. +...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 244 ~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 322 (394)
T 1fuu_A 244 EYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 322 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcC
Confidence 3 566666676655 55799999999999999999997 57789999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
+|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++. ...+..+++.++..++.++.+
T Consensus 323 ldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 323 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcc
Confidence 99999999999999999999999999999999999999999998 778899999888888766543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.5e-53 Score=439.69 Aligned_cols=335 Identities=34% Similarity=0.594 Sum_probs=290.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (620)
|++.+.++|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|+++. +.++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------------~~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------------GMKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------------TCCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------------cCCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999864 124999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhh
Q 007044 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (620)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~ 275 (620)
|++|+.|+++.+..++...++.+..++|+.....+...+. .++|+|+||++|.+++.++.+.+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 9999999999999998888899999999998877766655 499999999999999988888889999999999999999
Q ss_pred cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHH
Q 007044 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355 (620)
Q Consensus 276 ~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 355 (620)
++|...+..++...+. ..++++||||+|..+......++. .+..+.. .....++.+.++.+....+.. + .
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~-~ 213 (337)
T 2z0m_A 144 MGFIDDIKIILAQTSN--RKITGLFSATIPEEIRKVVKDFIT-NYEEIEA-----CIGLANVEHKFVHVKDDWRSK-V-Q 213 (337)
T ss_dssp TTCHHHHHHHHHHCTT--CSEEEEEESCCCHHHHHHHHHHSC-SCEEEEC-----SGGGGGEEEEEEECSSSSHHH-H-H
T ss_pred cccHHHHHHHHhhCCc--ccEEEEEeCcCCHHHHHHHHHhcC-Cceeeec-----ccccCCceEEEEEeChHHHHH-H-H
Confidence 9999999999998876 678999999999999888888873 4444422 123345666666555433221 2 3
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHhcccchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcC
Q 007044 356 IIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435 (620)
Q Consensus 356 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d 435 (620)
.+.. ..++++||||++++.++.++..|..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+
T Consensus 214 ~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 214 ALRE-NKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp HHHT-CCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred HHHh-CCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 3333 366899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccccCCCccEEEEEeCCCchHHHHHHHHhC
Q 007044 436 PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESG 478 (620)
Q Consensus 436 ~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~~~i~~~~~ 478 (620)
+|+++..|+||+||+||.|+.|.|++|+..+...++.+++.++
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFILNEYWLEKEVKKVSQ 335 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEESSCHHHHHHHC----
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEeCcHHHHHHHHHHhc
Confidence 9999999999999999999999999999944777777776654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.5e-51 Score=451.92 Aligned_cols=340 Identities=21% Similarity=0.276 Sum_probs=272.6
Q ss_pred CCCccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
..+.+.+|++++.+.+.|+. .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++..
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------- 83 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------- 83 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------------
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------------
Confidence 34456679999999999998 59999999999999999999999999999999999999999742
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH------hcCCCcEEEeChHHHH------HHHh
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK------LKKGIDVVIGTPGRIK------DHIE 253 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~------l~~~~~IlV~Tp~rl~------~~l~ 253 (620)
..++|||+||++|+.|+.+.+..+ ++.+..++|+.+...+... ...+++|+|+||++|. +++.
T Consensus 84 -~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 84 -DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp -SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred -CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 235999999999999999999886 5788899998876654332 2457999999999874 2333
Q ss_pred cCCccCCCccEEEeccchhhhhcC--cHHHHHH--HHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCc
Q 007044 254 RGNIDLSSLKFRVLDEADEMLRMG--FVEDVEL--ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329 (620)
Q Consensus 254 ~~~~~l~~l~~lVlDEah~~l~~~--f~~~l~~--il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~ 329 (620)
+ ...+.++.+|||||||+++++| |...+.. ++..... +.++++||||+++.+......++.... .+.+...
T Consensus 159 ~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~--~~~ii~lSAT~~~~v~~~i~~~l~~~~-~~~~~~~- 233 (591)
T 2v1x_A 159 K-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP--NASLIGLTATATNHVLTDAQKILCIEK-CFTFTAS- 233 (591)
T ss_dssp H-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT--TSEEEEEESSCCHHHHHHHHHHTTCCS-CEEEECC-
T ss_pred h-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC--CCcEEEEecCCCHHHHHHHHHHhCCCC-cEEEecC-
Confidence 2 4457889999999999999988 7776654 2322222 579999999999998888777774333 2222221
Q ss_pred ccccccceEEEEEeCCc--hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHH
Q 007044 330 KMKASTNVRHIVLPCSS--SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403 (620)
Q Consensus 330 ~~~~~~~i~~~~~~~~~--~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~ 403 (620)
....++...+..... ......+..++.....++++||||+|++.++.++..|. .+..+||+|++.+|..+++
T Consensus 234 --~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~ 311 (591)
T 2v1x_A 234 --FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHR 311 (591)
T ss_dssp --CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred --CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 223344443333222 22334455555443367899999999999999999997 6788999999999999999
Q ss_pred HhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHH
Q 007044 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKI 473 (620)
Q Consensus 404 ~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i 473 (620)
.|+.|+.+|||||+++++|||+|+|++||||++|.+.+.|+||+|||||.|++|.|++||++. ...+..+
T Consensus 312 ~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 312 KWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp HHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887 4444333
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.6e-50 Score=433.28 Aligned_cols=339 Identities=18% Similarity=0.291 Sum_probs=269.1
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 119 PLREKLKSK-GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 119 ~l~~~l~~~-g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
.+.+.+++. || +|+|+|.++++.+++|+|++++||||||||++|++|++..+.. ++++|||+||+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------------~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------------TCCEEEEESSH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------------CCEEEEEECCH
Confidence 345556554 55 8999999999999999999999999999999999998887733 34699999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 198 eLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
+||.|+++.+..++. .++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 999999999999987 88999999999988 5555666655 99999999999998875 66789999999999765
Q ss_pred h----------h-cCcHHH-HHHHHHhcc---------ccCCceEEeecCC-CChHHH-HHHHHhcccCCcEEEEecCcc
Q 007044 274 L----------R-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEK 330 (620)
Q Consensus 274 l----------~-~~f~~~-l~~il~~~~---------~~~~~q~ll~SAT-l~~~~~-~~~~~~~~~~~~~i~~~~~~~ 330 (620)
. + ++|..+ +..++..++ ....+|+++|||| +|..+. .+...++. + .....
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~--~~~~~ 224 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----F--TVGRL 224 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----C--CSSCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----c--CcCcc
Confidence 4 4 888888 888888775 1136899999999 665443 33333432 1 11112
Q ss_pred cccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cch-hhccccchHHHHHHHHHh
Q 007044 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGF 405 (620)
Q Consensus 331 ~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~-~lh~~l~~~~R~~~~~~F 405 (620)
.....++.+.++.+ .+...+..++... ++++||||+++..++.++..|. .+. .+||+ +|. ++.|
T Consensus 225 ~~~~~~i~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 225 VSVARNITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp CCCCCSEEEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred ccccccchheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 34455677777765 3455667777663 4899999999999999999997 455 78885 444 9999
Q ss_pred hcCCceEEEe----cccccccCCCCC-ccEEEEcCCC--CCHHHHHHHhcccccCC----CccEEEEEeCCCchHHHHHH
Q 007044 406 RSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPP--RDVEAYIHRSGRTGRAG----NTGVAVMLYDPRKSSVSKIE 474 (620)
Q Consensus 406 ~~g~~~vLva----Tdv~~rGlDi~~-v~~VI~~d~P--~s~~~yiqr~GRtgR~g----~~G~~i~l~~~~~~~~~~i~ 474 (620)
++|+++|||| |+++++|||+|+ |++||+||+| .++.+|+||+|||||.| +.|.|++|+ .+...+..++
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-~~~~~~~~l~ 372 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-EDEEIFESLK 372 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC-CCHHHHHHHH
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE-ccHHHHHHHH
Confidence 9999999999 999999999999 9999999999 99999999999999998 589999999 4456677777
Q ss_pred HHhC--CCc--eeeCCCCHHHHH
Q 007044 475 RESG--VKF--EHISAPQPADIA 493 (620)
Q Consensus 475 ~~~~--~~~--~~~~~p~~~~i~ 493 (620)
+.++ ..+ ..+......++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ 395 (414)
T 3oiy_A 373 TRLLLIAEEEIIEEAEANWKELV 395 (414)
T ss_dssp HHHHHHHCCCEEEGGGCCHHHHH
T ss_pred HHhcccccccccccccccHHHHH
Confidence 7766 333 344434444443
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-52 Score=455.54 Aligned_cols=364 Identities=26% Similarity=0.453 Sum_probs=258.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
.+...++++.+++.|.+.||..|+|+|.++++.+++| +++++++|||||||++|++|++..+.... .+
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----------~~ 189 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----------PK 189 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----------CS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----------CC
Confidence 3556678999999999999999999999999999988 99999999999999999999999886542 34
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
+++||++||++|+.|+++.+..++...++.+...+++..... ...+++|+|+||++|.+++.++.+.+.++++||+
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 579999999999999999999998877777776666654322 2346899999999999999988888999999999
Q ss_pred ccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC-C
Q 007044 268 DEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-S 345 (620)
Q Consensus 268 DEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~ 345 (620)
||||++.+ .++...+..++..++. +.|++++|||++..+..+...++ ..+..+.+... ......+.+.+..+ .
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPR--NTQIVLFSATFSERVEKYAERFA-PNANEIRLKTE--ELSVEGIKQLYMDCQS 340 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCT--TCEEEEEESCCSTHHHHHHHHHS-TTCEEECCCCC--C----CCCCEEEEC--
T ss_pred echhhhcccCCcHHHHHHHHHhCCc--CCeEEEEeCCCCHHHHHHHHHhc-CCCeEEEeccc--cCCcccceEEEEECCc
Confidence 99999987 6899999999998876 68999999999999999888887 45555544332 23334455555554 3
Q ss_pred chhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccc
Q 007044 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~r 421 (620)
...+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 341 ~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 341 EEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 455666677777665 56899999999999999999987 5778999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCC------CCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCceeeCCCCHHHHH
Q 007044 422 GLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQPADIA 493 (620)
Q Consensus 422 GlDi~~v~~VI~~d~P------~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~p~~~~i~ 493 (620)
|+|+|++++||+||+| .++..|+||+||+||.|+.|.|++|+.+. ...+..+++..+..++++..+..+++.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~ 499 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEELE 499 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----------
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHHHH
Confidence 9999999999999999 88999999999999999999999999865 677999999999999988776655543
No 18
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.2e-52 Score=459.40 Aligned_cols=321 Identities=19% Similarity=0.267 Sum_probs=254.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..|| .|||+|..++|.++.|+ |+.++||+|||++|++|++.....+ ++++||+|||+||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g-------------~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG-------------KGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHH
Confidence 5799 99999999999999999 9999999999999999998544332 249999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhc------CCccCCCccEEEeccchhhh-hcC
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEML-RMG 277 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~------~~~~l~~l~~lVlDEah~~l-~~~ 277 (620)
++..++.++|+++++++||.+...+ ....++||+|||||+| .|+|.. +.+.++.+.++||||||+|| +++
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9999999999999999999986543 3345799999999999 666543 34678999999999999998 764
Q ss_pred ---------------cHHHHHHHHHhccc-------cCCceEE-----------------eecCCCChHHHHHH-----H
Q 007044 278 ---------------FVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHIS-----T 313 (620)
Q Consensus 278 ---------------f~~~l~~il~~~~~-------~~~~q~l-----------------l~SATl~~~~~~~~-----~ 313 (620)
|+..+..|+..++. ...+|++ +||||++.++..+. .
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 78899999999873 1357888 99999986555542 3
Q ss_pred HhcccCCcEEE------EecCc----------------------------ccccccceE---------------------
Q 007044 314 KFLKSDKKTID------LVGNE----------------------------KMKASTNVR--------------------- 338 (620)
Q Consensus 314 ~~~~~~~~~i~------~~~~~----------------------------~~~~~~~i~--------------------- 338 (620)
.++..+...+- ++... ...+..++.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 33433332221 00000 000000000
Q ss_pred --------------------------EEEEeCCchhhhhhHHHHHHh-cCCCCeEEEEEcccccHHHHHHhcc----cch
Q 007044 339 --------------------------HIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GAR 387 (620)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~----~~~ 387 (620)
+.++.+....|...+...+.. ...+.++||||+|+..++.|+..|. .+.
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~ 460 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 460 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 012234456677777776653 3456789999999999999999997 567
Q ss_pred hhccccchHHHHHHHHHhhcCCceEEEecccccccCCCC--------CccEEEEcCCCCCHHHHHHHhcccccCCCccEE
Q 007044 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459 (620)
Q Consensus 388 ~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~--------~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~ 459 (620)
+|||++.+.+|..+.+.|+.| .|+||||+|+||+||+ ++.|||||++|.+...|+||+|||||+|.+|.+
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 899999988888777777776 6999999999999999 889999999999999999999999999999999
Q ss_pred EEEeCCC
Q 007044 460 VMLYDPR 466 (620)
Q Consensus 460 i~l~~~~ 466 (620)
++|+++.
T Consensus 539 ~~~vs~e 545 (844)
T 1tf5_A 539 QFYLSME 545 (844)
T ss_dssp EEEEETT
T ss_pred EEEecHH
Confidence 9999887
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-50 Score=475.66 Aligned_cols=336 Identities=21% Similarity=0.245 Sum_probs=266.8
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
+..|..+++++.+...+...++..|+|+|.++|+.++.|+|+|++||||||||++|.+|++..+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g------------- 227 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------- 227 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-------------
Confidence 4567778888888777778888899999999999999999999999999999999999999988653
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
.++||++||++|+.|+++.|..++. .++.++|+.+.. .+++|+|+||++|.+++.++...+.++++|||
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEE
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEE
Confidence 3699999999999999999998765 577788887643 46999999999999999998888999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHH--HHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWV--KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 345 (620)
||||+|++++|...+..++..++. .+|+++||||+|+.. ..+...+. ..+..+..... ....+.++++...
T Consensus 297 DEaH~l~d~~rg~~~e~ii~~l~~--~~qvl~lSATipn~~e~a~~l~~~~-~~~~~vi~~~~----rp~pl~~~~~~~~ 369 (1108)
T 3l9o_A 297 DEVHYMRDKERGVVWEETIILLPD--KVRYVFLSATIPNAMEFAEWICKIH-SQPCHIVYTNF----RPTPLQHYLFPAH 369 (1108)
T ss_dssp ETGGGTTSHHHHHHHHHHHHHSCT--TSEEEEEECSCSSCHHHHHHHHHHT-CSCEEEEEECC----CSSCEEEEEEETT
T ss_pred hhhhhccccchHHHHHHHHHhcCC--CceEEEEcCCCCCHHHHHHHHHhhc-CCCeEEEecCC----CcccceEEEeecC
Confidence 999999999999999999999986 789999999998753 23334443 22333322211 1122333333211
Q ss_pred chh-------------------------------------------------h---hhhHHHHHHhc--CCCCeEEEEEc
Q 007044 346 SSA-------------------------------------------------R---SQVIPDIIRCY--SSGGRTIIFTE 371 (620)
Q Consensus 346 ~~~-------------------------------------------------~---~~~l~~ll~~~--~~~~~~iVF~~ 371 (620)
... + ...+..++..+ ...+++||||+
T Consensus 370 ~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~ 449 (1108)
T 3l9o_A 370 GDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSF 449 (1108)
T ss_dssp SSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeC
Confidence 100 0 12222233221 24569999999
Q ss_pred ccccHHHHHHhccc-------------------------------------------chhhccccchHHHHHHHHHhhcC
Q 007044 372 TKESASQLADLLPG-------------------------------------------ARALHGDIQQSQREVTLAGFRSG 408 (620)
Q Consensus 372 t~~~~~~l~~~l~~-------------------------------------------~~~lh~~l~~~~R~~~~~~F~~g 408 (620)
++..|+.++..|.. +..+||+|++.+|..+++.|++|
T Consensus 450 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G 529 (1108)
T 3l9o_A 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529 (1108)
T ss_dssp CHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC
Confidence 99999999988862 56799999999999999999999
Q ss_pred CceEEEecccccccCCCCCccEEEEcCCC--------CCHHHHHHHhcccccCC--CccEEEEEeCCC--chHHHHHH
Q 007044 409 KFMTLVATNVAARGLDINDVQLIIQCEPP--------RDVEAYIHRSGRTGRAG--NTGVAVMLYDPR--KSSVSKIE 474 (620)
Q Consensus 409 ~~~vLvaTdv~~rGlDi~~v~~VI~~d~P--------~s~~~yiqr~GRtgR~g--~~G~~i~l~~~~--~~~~~~i~ 474 (620)
.++|||||+++++|||+|++++||+++.| .++.+|+||+|||||.| ..|.|++++++. ...+..+.
T Consensus 530 ~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 530 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 99999999999999999999999987764 47778999999999999 689999999887 34444444
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-49 Score=436.33 Aligned_cols=340 Identities=20% Similarity=0.288 Sum_probs=270.4
Q ss_pred CccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
..|++++|++.+.+.|++ .||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--~-------------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--N-------------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--S--------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--C--------------
Confidence 368899999999999998 79999999999999999999999999999999999999999842 1
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHH----HhcCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
..+|||+|+++|+.|+.+.+..+ ++.+..+.++.+...+.. .....++|+|+||++|........+...++.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 24899999999999999999875 577888888877654432 2235699999999999643322234457899
Q ss_pred EEEeccchhhhhcC--cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEE
Q 007044 264 FRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (620)
Q Consensus 264 ~lVlDEah~~l~~~--f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 341 (620)
+||+||||++.++| |...+..+.......++.++++||||++..+.......+......+..... ...++....
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~----~r~~l~~~v 217 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF----DRPNIRYML 217 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC----CCTTEEEEE
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC----CCCceEEEE
Confidence 99999999999988 766655543222222357999999999998765444444223333332221 233444333
Q ss_pred EeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecc
Q 007044 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (620)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd 417 (620)
.. ...+...+..++... .+.++||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 218 ~~--~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 218 ME--KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp EE--CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred Ee--CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 33 233445566666554 56799999999999999999997 577899999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHH
Q 007044 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (620)
Q Consensus 418 v~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~ 475 (620)
++++|||+|+|++||||++|.+.+.|+||+||+||.|.+|.|++|+++. ...++.+..
T Consensus 295 a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988 445554443
No 21
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.2e-49 Score=435.39 Aligned_cols=322 Identities=20% Similarity=0.241 Sum_probs=228.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|||+|..++|.++.|+ |+.++||||||++|++|++.....+ ++++||+|||+||.|++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCCEEEESSHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-------------CcEEEEcCCHHHHHHHHHH
Confidence 565 99999999999999998 9999999999999999998655432 3499999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhh-hc--
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-RM-- 276 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l-~~-- 276 (620)
+..++.++++++++++||.+.. .+.+..+++|+|||||+| .|+|..+ .+.++++.++||||||+|| ++
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9999999999999999999864 444555799999999999 7888754 3667999999999999999 54
Q ss_pred -------------CcHHHHHHHHHhcccc------------------CCceEE------------------------eec
Q 007044 277 -------------GFVEDVELILGKVEDA------------------NKVQTL------------------------LFS 301 (620)
Q Consensus 277 -------------~f~~~l~~il~~~~~~------------------~~~q~l------------------------l~S 301 (620)
+|+..+..|+..++.. ..+|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 4778888999888641 134553 899
Q ss_pred CCCChHHHHHH-----HHhcccCC-------c-----------------------------EEEEecCcccccccceEE-
Q 007044 302 ATLPSWVKHIS-----TKFLKSDK-------K-----------------------------TIDLVGNEKMKASTNVRH- 339 (620)
Q Consensus 302 ATl~~~~~~~~-----~~~~~~~~-------~-----------------------------~i~~~~~~~~~~~~~i~~- 339 (620)
||++..+..+. ..++..+. . .+.+... ..+..++.+
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e--~~tla~It~q 370 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNE--NQTLASITFQ 370 (853)
T ss_dssp ----------------------------------------------------------------CCCC--CEEEEEEEHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccc--ccccceeehH
Confidence 99876443331 11121111 0 1111000 011111110
Q ss_pred ----------------------------------------------EEEeCCchhhhhhHHHHHH-hcCCCCeEEEEEcc
Q 007044 340 ----------------------------------------------IVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTET 372 (620)
Q Consensus 340 ----------------------------------------------~~~~~~~~~~~~~l~~ll~-~~~~~~~~iVF~~t 372 (620)
.++.+....|..++...+. ....+.++||||+|
T Consensus 371 nyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~s 450 (853)
T 2fsf_A 371 NYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTIS 450 (853)
T ss_dssp HHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred HHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 1233455677777777775 34567899999999
Q ss_pred cccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCc--------------------
Q 007044 373 KESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV-------------------- 428 (620)
Q Consensus 373 ~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v-------------------- 428 (620)
+..++.|+..|. .+.+|||++.+.+|..+.++|+.| .|+||||+|+||+||+..
T Consensus 451 ie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 451 IEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 999999999998 567899999999998999999999 699999999999999973
Q ss_pred -----------------cEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHH
Q 007044 429 -----------------QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (620)
Q Consensus 429 -----------------~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~ 470 (620)
.|||+|++|.|...|+||+|||||+|.+|.+++|++.....+
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHH
Confidence 699999999999999999999999999999999999884433
No 22
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.1e-47 Score=445.31 Aligned_cols=338 Identities=18% Similarity=0.292 Sum_probs=270.5
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..|| +|||+|.+++|.++.|+|++++||||||||++|++|++..+.. ++++|||+|||+||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------TCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------CCeEEEEechHHHHHHHHH
Confidence 4688 6999999999999999999999999999999988888887733 3469999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEeChHHHHHHHhcCCccCCCccEEEeccch----------
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD---------- 271 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah---------- 271 (620)
.+..++ ..++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999987 778999999999988 6666777766 99999999999999875 678899999999996
Q ss_pred hhhh-cCcHHH-HHHHHHhcc---------ccCCceEEeecCC-CChHHH-HHHHHhcccCCcEEEEecCcccccccceE
Q 007044 272 EMLR-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (620)
Q Consensus 272 ~~l~-~~f~~~-l~~il~~~~---------~~~~~q~ll~SAT-l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 338 (620)
+|++ +||..+ +..++..++ .....|+++|||| .|..+. .+...++. +.+ ........++.
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v--~~~~~~~~~i~ 289 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTV--GRLVSVARNIT 289 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCC--CBCCCCCCCEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEe--ccCCCCcCCce
Confidence 4556 899988 899998876 0126899999999 666544 23333332 111 12234566778
Q ss_pred EEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cch-hhccccchHHHHHHHHHhhcCCceEE
Q 007044 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGFRSGKFMTL 413 (620)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~-~lh~~l~~~~R~~~~~~F~~g~~~vL 413 (620)
+.++.+ .+...+..++... ++++||||+++..++.++..|. .+. .+||+ |.+ ++.|++|+++||
T Consensus 290 ~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 290 HVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred eEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 888776 3556667777664 3899999999999999999997 566 88983 555 999999999999
Q ss_pred Ee----cccccccCCCCC-ccEEEEcCCCC--------------------------------------------------
Q 007044 414 VA----TNVAARGLDIND-VQLIIQCEPPR-------------------------------------------------- 438 (620)
Q Consensus 414 va----Tdv~~rGlDi~~-v~~VI~~d~P~-------------------------------------------------- 438 (620)
|| |++++||||+|+ |++|||||+|.
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99 999999999999 99999999999
Q ss_pred ----------------------CHHHHHHHhcccccCCC----ccEEEEEeCCCchHHHHHHHHh----CCCceeeCCCC
Q 007044 439 ----------------------DVEAYIHRSGRTGRAGN----TGVAVMLYDPRKSSVSKIERES----GVKFEHISAPQ 488 (620)
Q Consensus 439 ----------------------s~~~yiqr~GRtgR~g~----~G~~i~l~~~~~~~~~~i~~~~----~~~~~~~~~p~ 488 (620)
++.+|+||+|||||.|. .|.++++++. ...+..+++.+ ++.+.++...+
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d-~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEED-EEIFESLKTRLLLIAEEEIIEEAEAN 517 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCC-HHHHHHHHHHHHHHTCCCEEEGGGCC
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEec-HHHHHHHHHHHhhhcccccccccccC
Confidence 88899999999999654 5778888844 34455555544 46666666666
Q ss_pred HHHHHHHHhHH
Q 007044 489 PADIAKAAGVE 499 (620)
Q Consensus 489 ~~~i~~~~~~~ 499 (620)
.+++.+...+.
T Consensus 518 ~~~~~~~i~~~ 528 (1104)
T 4ddu_A 518 WKELVHEVEES 528 (1104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHH
Confidence 77776654433
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.3e-47 Score=423.03 Aligned_cols=330 Identities=20% Similarity=0.240 Sum_probs=204.6
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
++..+|+|+|.++++.++.|+|+++++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~ 74 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKNV 74 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------cCCCeEEEEeCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999877532 2356799999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc-cCCCccEEEeccchhhhhcCcHHHHH-H
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE-L 284 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l~-~ 284 (620)
+..++...++++..++|+.+...+...+..+++|+|+||++|.+++.++.+ .+.++++||+||||++.++++...+. .
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 154 (556)
T 4a2p_A 75 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 154 (556)
T ss_dssp HHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHH
T ss_pred HHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHH
Confidence 999988888999999999987777777777899999999999999998877 79999999999999999887654442 2
Q ss_pred HHHh-ccc-cCCceEEeecCCCCh--------HHHHHHHHhcccCCcEEEEecCcc-----cccccceEEEEEe------
Q 007044 285 ILGK-VED-ANKVQTLLFSATLPS--------WVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP------ 343 (620)
Q Consensus 285 il~~-~~~-~~~~q~ll~SATl~~--------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~i~~~~~~------ 343 (620)
++.. +.. .+.+|+++||||++. +...+....-..+...+....... ...........+.
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP 234 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCH
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCCh
Confidence 2221 111 235799999999853 112211111001111111111000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007044 344 -------------------------------------------------------------------------------- 343 (620)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (620)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (556)
T 4a2p_A 235 FAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDA 314 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------CCchhhhhhHHHHHHhc---CCCCeEE
Q 007044 344 -----------------------------------------------------CSSSARSQVIPDIIRCY---SSGGRTI 367 (620)
Q Consensus 344 -----------------------------------------------------~~~~~~~~~l~~ll~~~---~~~~~~i 367 (620)
.....+...|..++... ..+.++|
T Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~l 394 (556)
T 4a2p_A 315 LIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTL 394 (556)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEE
Confidence 00122344444555432 4678999
Q ss_pred EEEcccccHHHHHHhccc----------------chhhccccchHHHHHHHHHhhc-CCceEEEecccccccCCCCCccE
Q 007044 368 IFTETKESASQLADLLPG----------------ARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQL 430 (620)
Q Consensus 368 VF~~t~~~~~~l~~~l~~----------------~~~lh~~l~~~~R~~~~~~F~~-g~~~vLvaTdv~~rGlDi~~v~~ 430 (620)
|||+++..++.++..|.. ...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++
T Consensus 395 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~ 474 (556)
T 4a2p_A 395 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 474 (556)
T ss_dssp EEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CE
T ss_pred EEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCE
Confidence 999999999999999852 2356889999999999999999 99999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 431 IIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 431 VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
||+||+|+++..|+||+|| ||. +.|.+++|+++.
T Consensus 475 VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 508 (556)
T 4a2p_A 475 VVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 508 (556)
T ss_dssp EEEETCCSCHHHHHHC----------CCEEEEESCH
T ss_pred EEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCc
Confidence 9999999999999999999 999 899999999887
No 24
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.8e-47 Score=421.00 Aligned_cols=325 Identities=20% Similarity=0.241 Sum_probs=256.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..|+ .|||+|..++|.++.|+ |+.++||+|||++|++|++.....+. +++||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~-------------~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN-------------GVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS-------------CEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC-------------CeEEEeCCHHHHHHHHH
Confidence 4698 99999999999999998 99999999999999999975544332 49999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhh-h--
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-R-- 275 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l-~-- 275 (620)
++..++.++|+++++++||.+... +....++||+||||++| .|+|..+ .+.++.+.++||||||+|| +
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 999999999999999999998543 34444699999999999 7887654 4678899999999999999 4
Q ss_pred -------------cCcHHHHHHHHHhccc-------cCCceEE-----------------eecCCCChHHHHHH-----H
Q 007044 276 -------------MGFVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHIS-----T 313 (620)
Q Consensus 276 -------------~~f~~~l~~il~~~~~-------~~~~q~l-----------------l~SATl~~~~~~~~-----~ 313 (620)
++|+..+..|+..++. ...+|++ +||||++.++..+. .
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 3689999999999972 1367898 99999987554432 2
Q ss_pred HhcccCCcEE-------EEecC---------------------------cccccccceE---------------------
Q 007044 314 KFLKSDKKTI-------DLVGN---------------------------EKMKASTNVR--------------------- 338 (620)
Q Consensus 314 ~~~~~~~~~i-------~~~~~---------------------------~~~~~~~~i~--------------------- 338 (620)
.++..+...+ .+... ....+...+.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 2332222111 11100 0000000011
Q ss_pred --------------------------EEEEeCCchhhhhhHHHHHH-hcCCCCeEEEEEcccccHHHHHHhcc----cch
Q 007044 339 --------------------------HIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GAR 387 (620)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~ 387 (620)
+.++.+....|...+...+. ....+.++||||+|+..++.|+..|. .+.
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 01223345567766766664 34466799999999999999999998 577
Q ss_pred hhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCc---------------------------------------
Q 007044 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV--------------------------------------- 428 (620)
Q Consensus 388 ~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v--------------------------------------- 428 (620)
+|||++.+.++..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 899999888888888999988 699999999999999975
Q ss_pred -------------cEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCchHH
Q 007044 429 -------------QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (620)
Q Consensus 429 -------------~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~~~ 470 (620)
.|||+|++|.|...|+||+|||||.|.+|.+++|++.....+
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999998874333
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.8e-47 Score=419.26 Aligned_cols=327 Identities=20% Similarity=0.236 Sum_probs=229.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
.+|+|+|.++++.++.|+|+|+++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++++..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------GQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999887532 2356799999999999999999999
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc-cCCCccEEEeccchhhhhcCcHHHH-HHHHH
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDV-ELILG 287 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l-~~il~ 287 (620)
++...++++..++|+.....+...+..+++|+|+||++|.+++.++.+ .+.++++||+||||++.+.+....+ ...+.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 988889999999999987777666777899999999999999998877 7899999999999999887643332 23332
Q ss_pred hc-cc--cCCceEEeecCCCChH--------HHHHHHHhcccCCcEEEEecCc-----ccccccceEEEEEeC-------
Q 007044 288 KV-ED--ANKVQTLLFSATLPSW--------VKHISTKFLKSDKKTIDLVGNE-----KMKASTNVRHIVLPC------- 344 (620)
Q Consensus 288 ~~-~~--~~~~q~ll~SATl~~~--------~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~i~~~~~~~------- 344 (620)
.. .. .+.+|+++||||++.. ...+.......+...+...... ............+..
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 21 11 1357999999998542 1111111111111222211100 000000111100000
Q ss_pred --------------------------------------------------------------------------------
Q 007044 345 -------------------------------------------------------------------------------- 344 (620)
Q Consensus 345 -------------------------------------------------------------------------------- 344 (620)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------CchhhhhhHHHHHHhc---CCCCeEEE
Q 007044 345 -----------------------------------------------------SSSARSQVIPDIIRCY---SSGGRTII 368 (620)
Q Consensus 345 -----------------------------------------------------~~~~~~~~l~~ll~~~---~~~~~~iV 368 (620)
....+...+..++... ..+.++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 0122334444444432 35689999
Q ss_pred EEcccccHHHHHHhcc----------------cchhhccccchHHHHHHHHHhhc-CCceEEEecccccccCCCCCccEE
Q 007044 369 FTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLI 431 (620)
Q Consensus 369 F~~t~~~~~~l~~~l~----------------~~~~lh~~l~~~~R~~~~~~F~~-g~~~vLvaTdv~~rGlDi~~v~~V 431 (620)
||+++..++.++..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 9999999999999885 23356789999999999999999 999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 432 IQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 432 I~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|+||+|+++..|+||+|| ||. +.|.+++|+++.
T Consensus 475 I~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 475 ILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp EEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred EEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 999999999999999999 999 899999999887
No 26
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=8.2e-47 Score=443.93 Aligned_cols=340 Identities=21% Similarity=0.300 Sum_probs=268.0
Q ss_pred HHHH-HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 122 EKLK-SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 122 ~~l~-~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
+.+. ..||. | |+|.++||.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||+||
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------------~~~~~lil~PtreLa 112 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL------------KGKRCYVIFPTSLLV 112 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT------------TSCCEEEEESCHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh------------cCCeEEEEeccHHHH
Confidence 4443 47999 9 9999999999999999999999999998 99999988764 235699999999999
Q ss_pred HHHHHHHHHhhcCCCc----eEEEEeCCcchHHH---HHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 201 KQVHEDFDVYGGAVGL----TSCCLYGGAPYHAQ---EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 201 ~Qv~~~~~~~~~~~~~----~v~~~~gg~~~~~~---~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
.|+++.+..++...++ ++..++||.+...+ ...+.. ++|+|+||++|.+++.+ ++++++||+||||+|
T Consensus 113 ~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~ 187 (1054)
T 1gku_B 113 IQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAI 187 (1054)
T ss_dssp HHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhh
Confidence 9999999999988888 89999999988764 344555 99999999999998875 679999999999999
Q ss_pred hhcCcHHHHHHHHHhccc---------cCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeC
Q 007044 274 LRMGFVEDVELILGKVED---------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~---------~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 344 (620)
++ |..++..++..+.- ...+|+++||||++.. ..+...++. .+..+.+. .......++.+.++
T Consensus 188 l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~-~~~~i~v~--~~~~~~~~i~~~~~-- 259 (1054)
T 1gku_B 188 LK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFR-QLLNFDIG--SSRITVRNVEDVAV-- 259 (1054)
T ss_dssp HT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHH-HHHCCCCS--CCEECCCCEEEEEE--
T ss_pred hh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhh-cceEEEcc--CcccCcCCceEEEe--
Confidence 98 45777777776631 1257999999999987 433333331 22222221 12234456677666
Q ss_pred CchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc---cchhhccccchHHHHHHHHHhhcCCceEEEe----cc
Q 007044 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVA----TN 417 (620)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~---~~~~lh~~l~~~~R~~~~~~F~~g~~~vLva----Td 417 (620)
...+...+..++... ++++||||+|+..++.++..|. .+..+||++ ..+++.|++|+++|||| |+
T Consensus 260 -~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 260 -NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp -SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC---
T ss_pred -chhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCC
Confidence 355667777888765 5789999999999999999997 467899998 37889999999999999 99
Q ss_pred cccccCCCCCc-cEEEEcCCC-----------------------------------------------------------
Q 007044 418 VAARGLDINDV-QLIIQCEPP----------------------------------------------------------- 437 (620)
Q Consensus 418 v~~rGlDi~~v-~~VI~~d~P----------------------------------------------------------- 437 (620)
++++|||+|+| ++|||||+|
T Consensus 332 v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999996 999999999
Q ss_pred ------------CCHHHHHHHhcccccCCCccE--EEEEeCCC-chHHHHHHHHhC---CCceeeCCCCHHHHHHHHh
Q 007044 438 ------------RDVEAYIHRSGRTGRAGNTGV--AVMLYDPR-KSSVSKIERESG---VKFEHISAPQPADIAKAAG 497 (620)
Q Consensus 438 ------------~s~~~yiqr~GRtgR~g~~G~--~i~l~~~~-~~~~~~i~~~~~---~~~~~~~~p~~~~i~~~~~ 497 (620)
.+..+|+||+|||||.|..|. +++|+... ...+..+++.++ ..+..+..+..+++.+...
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~i~ 489 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELD 489 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHHHH
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHhhc
Confidence 799999999999999887763 66666665 666777777665 5777777788887776543
No 27
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.9e-46 Score=426.20 Aligned_cols=342 Identities=20% Similarity=0.298 Sum_probs=266.6
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
+..|++++|++.+.+.+.+.||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------ 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------ 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------
Confidence 45799999999999999999999999999999999 78999999999999999999999999887632
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
+.+++|++|+|+||.|+++.++.+. ..++++..++|+...... . ..+++|+|+||++|..++.++...++++++||
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--W-LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--G-GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--h-cCCCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 2369999999999999999996554 358899999998755432 1 23699999999999999988777789999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEE-------
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH------- 339 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~------- 339 (620)
+||||++.+.++...++.++..++ +.|+++||||+++ ...+.. |+. ...+..... ...+..
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~---~~~ii~lSATl~n-~~~~~~-~l~--~~~~~~~~r-----~~~l~~~~~~~~~ 218 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK---RRNLLALSATISN-YKQIAK-WLG--AEPVATNWR-----PVPLIEGVIYPER 218 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH---TSEEEEEESCCTT-HHHHHH-HHT--CEEEECCCC-----SSCEEEEEEEECS
T ss_pred EechhhcCCcccchHHHHHHHhcc---cCcEEEEcCCCCC-HHHHHH-HhC--CCccCCCCC-----CCCceEEEEecCC
Confidence 999999988889999999998887 4799999999986 344444 432 111111100 000111
Q ss_pred ------EEEeCCchh----hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-------------------------
Q 007044 340 ------IVLPCSSSA----RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------- 384 (620)
Q Consensus 340 ------~~~~~~~~~----~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------------------------- 384 (620)
..+...... ....+..+.+....++++||||+++++++.++..|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 219 KKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEE 298 (715)
T ss_dssp STTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCS
T ss_pred cccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhh
Confidence 111100000 112233344444577999999999999998887764
Q ss_pred ---------------cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cC-------CCC
Q 007044 385 ---------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-------PPR 438 (620)
Q Consensus 385 ---------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d-------~P~ 438 (620)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred ccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 2667999999999999999999999999999999999999999999999 99 899
Q ss_pred CHHHHHHHhcccccCCC--ccEEEEEeCCCchHHHHHHHHh
Q 007044 439 DVEAYIHRSGRTGRAGN--TGVAVMLYDPRKSSVSKIERES 477 (620)
Q Consensus 439 s~~~yiqr~GRtgR~g~--~G~~i~l~~~~~~~~~~i~~~~ 477 (620)
+..+|+||+|||||.|. .|.|++++++.......+++.+
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l 419 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYV 419 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTT
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHH
Confidence 99999999999999984 8999999987743333344443
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.4e-46 Score=429.69 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=273.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
.|++++|++.+.+.+.+.||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------------GG 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------------CS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------------CC
Confidence 588999999999999999999999999999998 88999999999999999999999999887632 23
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
+++|++|+++||.|+++.+..+.. .++++..++|+...... ...+++|+|+||++|..++.++...++++++||+|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 699999999999999999976544 48899999998765432 23469999999999999998877778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE------
Q 007044 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL------ 342 (620)
Q Consensus 269 Eah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~------ 342 (620)
|||++.+.++...++.++..++. +.|+++||||+++. ..+.. |+.. ..+.... .+..+...+.
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~--~~~ii~lSATl~n~-~~~~~-~l~~--~~~~~~~-----rp~~l~~~~~~~~~~~ 214 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLG--KAQIIGLSATIGNP-EELAE-WLNA--ELIVSDW-----RPVKLRRGVFYQGFVT 214 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBT--TBEEEEEECCCSCH-HHHHH-HTTE--EEEECCC-----CSSEEEEEEEETTEEE
T ss_pred CCcccCCCcccHHHHHHHHHhhc--CCeEEEEcCCcCCH-HHHHH-HhCC--cccCCCC-----CCCcceEEEEeCCeee
Confidence 99999988999999999998875 68999999999873 44444 4421 1111100 0011111111
Q ss_pred eCCc--hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------------------------------------
Q 007044 343 PCSS--SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------------------ 384 (620)
Q Consensus 343 ~~~~--~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------------------------------------ 384 (620)
.... ......+..+.+....++++||||++++.++.++..|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 215 WEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp ETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 0110 00112233333333467899999999999999887765
Q ss_pred -cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cC----CCCCHHHHHHHhcccccCC-
Q 007044 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE----PPRDVEAYIHRSGRTGRAG- 454 (620)
Q Consensus 385 -~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d----~P~s~~~yiqr~GRtgR~g- 454 (620)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 1667999999999999999999999999999999999999999999999 77 6999999999999999998
Q ss_pred -CccEEEEEeCCCchHHHHHHHHhCCCceee
Q 007044 455 -NTGVAVMLYDPRKSSVSKIERESGVKFEHI 484 (620)
Q Consensus 455 -~~G~~i~l~~~~~~~~~~i~~~~~~~~~~~ 484 (620)
..|.|++++++.. ....+++.+....+.+
T Consensus 375 ~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD-PREVMNHYIFGKPEKL 404 (720)
T ss_dssp CSEEEEEEECSSSC-HHHHHHHHTTSCCCCC
T ss_pred CCCceEEEEecCcc-HHHHHHHHhcCCCCCc
Confidence 4899999998874 1222344444444443
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.8e-47 Score=433.96 Aligned_cols=336 Identities=19% Similarity=0.210 Sum_probs=217.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHH
Q 007044 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (620)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa 200 (620)
..+|...||..|+|+|.++++.++.|+|+|+++|||||||++|++|+++.+..... ..+.++|||+||++|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--------GQKGKVVFFANQIPVY 74 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--------TCCCCEEEECSSHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--------CCCCeEEEEECCHHHH
Confidence 35677889999999999999999999999999999999999999999998875431 2335699999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc-cCCCccEEEeccchhhhhcCcH
Q 007044 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFV 279 (620)
Q Consensus 201 ~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~ 279 (620)
.|+.+++..++...++++..++|+.....+...+..+++|+|+||++|.+++.++.+ .+.++++|||||||++.+...+
T Consensus 75 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999988888999999999877666666667899999999999999998877 7899999999999998765422
Q ss_pred HHH-HHHHHh-c--cccCCceEEeecCCCC--------hHHHHHHHHhcccCCcEEEEe---------------------
Q 007044 280 EDV-ELILGK-V--EDANKVQTLLFSATLP--------SWVKHISTKFLKSDKKTIDLV--------------------- 326 (620)
Q Consensus 280 ~~l-~~il~~-~--~~~~~~q~ll~SATl~--------~~~~~~~~~~~~~~~~~i~~~--------------------- 326 (620)
..+ ...+.. + ...+.+++++||||+. ..+..+.......+...+...
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 234 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV 234 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEec
Confidence 222 222222 1 0112579999999986 122222221100000000000
Q ss_pred cCccc---------------------------------------------------------------------------
Q 007044 327 GNEKM--------------------------------------------------------------------------- 331 (620)
Q Consensus 327 ~~~~~--------------------------------------------------------------------------- 331 (620)
.....
T Consensus 235 ~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (696)
T 2ykg_A 235 ESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 314 (696)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 00000
Q ss_pred ---------------------------------ccccceEEEEEe---------------C-CchhhhhhHHHHHHhc--
Q 007044 332 ---------------------------------KASTNVRHIVLP---------------C-SSSARSQVIPDIIRCY-- 360 (620)
Q Consensus 332 ---------------------------------~~~~~i~~~~~~---------------~-~~~~~~~~l~~ll~~~-- 360 (620)
.....+.+.+.. + ....+...|..++...
T Consensus 315 ~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~ 394 (696)
T 2ykg_A 315 HLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 394 (696)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 000000000000 0 1234555666666554
Q ss_pred -CCCCeEEEEEcccccHHHHHHhcc--------cchhh--------ccccchHHHHHHHHHhhc-CCceEEEeccccccc
Q 007044 361 -SSGGRTIIFTETKESASQLADLLP--------GARAL--------HGDIQQSQREVTLAGFRS-GKFMTLVATNVAARG 422 (620)
Q Consensus 361 -~~~~~~iVF~~t~~~~~~l~~~l~--------~~~~l--------h~~l~~~~R~~~~~~F~~-g~~~vLvaTdv~~rG 422 (620)
..++++||||+++..++.++..|. .+..+ ||+|++.+|..++++|++ |.++|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 356899999999999999999985 23445 669999999999999998 999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 423 lDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
||+|+|++||+||+|+++.+|+||+|| ||. +.|.|++|++..
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 999999999999999999999999999 998 789999999877
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.3e-46 Score=428.86 Aligned_cols=332 Identities=25% Similarity=0.339 Sum_probs=262.2
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 110 AVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 110 ~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
+|++++ |++.+.+.+.+.||..|+|+|.++++.++++++++++||||||||++|.+|+++.+..+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG------------- 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 578888 99999999999999999999999999999999999999999999999999999988653
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
.+++|++|+|+||.|+++.++.+. ..++++..++|+...... ...+++|+|+||++|..++.++...++++++||+
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 249999999999999999996554 358899999998755332 1236999999999999999887767899999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccc-cCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEE-----
Q 007044 268 DEADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV----- 341 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~-~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~----- 341 (620)
||||++.+.++...++.++..+.. .++.|+++||||+++ ...++. ++. ...+..... ...+...+
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~--~~~~~~~~r-----~~~l~~~~~~~~~ 215 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLD--ADYYVSDWR-----PVPLVEGVLCEGT 215 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTT--CEEEECCCC-----SSCEEEEEECSSE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhC--CCcccCCCC-----CccceEEEeeCCe
Confidence 999999988898888888877631 126899999999986 345544 442 222211110 11111111
Q ss_pred --EeCCch---hhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc--------------------------------
Q 007044 342 --LPCSSS---ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------------------------------- 384 (620)
Q Consensus 342 --~~~~~~---~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-------------------------------- 384 (620)
+..... .....+..+.+....++++||||++++.++.++..|.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 295 (702)
T 2p6r_A 216 LELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECV 295 (702)
T ss_dssp EEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH
T ss_pred eeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHH
Confidence 111000 1111233333334467899999999999998887764
Q ss_pred --cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cC---CCCCHHHHHHHhcccccCC-
Q 007044 385 --GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE---PPRDVEAYIHRSGRTGRAG- 454 (620)
Q Consensus 385 --~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d---~P~s~~~yiqr~GRtgR~g- 454 (620)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 296 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 296 RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 2567999999999999999999999999999999999999999999999 76 7999999999999999998
Q ss_pred -CccEEEEEeCCCc
Q 007044 455 -NTGVAVMLYDPRK 467 (620)
Q Consensus 455 -~~G~~i~l~~~~~ 467 (620)
..|.|++++++..
T Consensus 376 ~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 376 DERGEAIIIVGKRD 389 (702)
T ss_dssp CSCEEEEEECCGGG
T ss_pred CCCceEEEEecCcc
Confidence 4899999998874
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-45 Score=424.95 Aligned_cols=328 Identities=20% Similarity=0.245 Sum_probs=210.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
-.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|+++.+..... ..++++|||+||++|+.|+.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999887532 235679999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc-cCCCccEEEeccchhhhhcCcHHHHH-
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE- 283 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l~- 283 (620)
.|..++...++++..++|+.+...+...+..+++|+|+||++|.+++.++.+ .+.++++||+||||++...+....+.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999988788999999999988777777777899999999999999998877 78999999999999998776444332
Q ss_pred HHHHhc-c-ccCCceEEeecCCCCh-----------HHHHHHHHhcccCCcEEEEecCcc-----cccccceEEEEEe--
Q 007044 284 LILGKV-E-DANKVQTLLFSATLPS-----------WVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP-- 343 (620)
Q Consensus 284 ~il~~~-~-~~~~~q~ll~SATl~~-----------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~i~~~~~~-- 343 (620)
.++... . ..+.+|+++||||++. .+..+...+ +...+....... ...........+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L---~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL---DIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH---TCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhc---CCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 222221 1 1225799999999852 222221111 111111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007044 344 -------------------------------------------------------------------------------- 343 (620)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (620)
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------CCchhhhhhHHHHHHhc---CCC
Q 007044 344 ---------------------------------------------------------CSSSARSQVIPDIIRCY---SSG 363 (620)
Q Consensus 344 ---------------------------------------------------------~~~~~~~~~l~~ll~~~---~~~ 363 (620)
.....+...|..++... ..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCC
Confidence 00122334444455431 466
Q ss_pred CeEEEEEcccccHHHHHHhcc----------------cchhhccccchHHHHHHHHHhhc-CCceEEEecccccccCCCC
Q 007044 364 GRTIIFTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDIN 426 (620)
Q Consensus 364 ~~~iVF~~t~~~~~~l~~~l~----------------~~~~lh~~l~~~~R~~~~~~F~~-g~~~vLvaTdv~~rGlDi~ 426 (620)
.++||||+++..++.++..|. ....+||+|++.+|..++++|++ |.++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 899999999999999999884 23467899999999999999999 9999999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 427 ~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+|++||+||+|+|+..|+||+|| ||. +.|.|++|+++.
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 99999999999999999999999 999 899999999876
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-44 Score=418.90 Aligned_cols=315 Identities=21% Similarity=0.260 Sum_probs=251.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..+|. |+|+|.++++.++.|++++++||||||||++|.+|++..+..+ .++||++||++|+.|+++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-------------~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------------QRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CEEEEEESSHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-------------CeEEEECChHHHHHHHHH
Confidence 45664 9999999999999999999999999999999999999888543 369999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHH
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~i 285 (620)
.|..++. .++.++|+.+.. .+++|+|+||++|.+++.++...+.++++|||||||+|.++++...++.+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9988765 678888987654 35899999999999999988888999999999999999999999999999
Q ss_pred HHhccccCCceEEeecCCCChHHHHHHHH---hcccCCcEEEEecCcccccccceEEEEEeCC---------chh-----
Q 007044 286 LGKVEDANKVQTLLFSATLPSWVKHISTK---FLKSDKKTIDLVGNEKMKASTNVRHIVLPCS---------SSA----- 348 (620)
Q Consensus 286 l~~~~~~~~~q~ll~SATl~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~----- 348 (620)
+..++. .+|+++||||+|+... ++.. .. ..+..+..... ....+.++++... ...
T Consensus 217 l~~l~~--~~~il~LSATi~n~~e-~a~~l~~~~-~~~~~vi~~~~----rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1010)
T 2xgj_A 217 IILLPD--KVRYVFLSATIPNAME-FAEWICKIH-SQPCHIVYTNF----RPTPLQHYLFPAHGDGIYLVVDEKSTFREE 288 (1010)
T ss_dssp HHHSCT--TCEEEEEECCCTTHHH-HHHHHHHHH-TSCEEEEEECC----CSSCEEEEEEETTSSCCEEEECTTCCBCHH
T ss_pred HHhcCC--CCeEEEEcCCCCCHHH-HHHHHHhhc-CCCeEEEecCC----CcccceEEEEecCCcceeeeeccccccchH
Confidence 999876 7899999999987532 2222 22 22332222211 1122333333211 000
Q ss_pred ------------------------------h--------hhhHHHHHHhcC--CCCeEEEEEcccccHHHHHHhccc---
Q 007044 349 ------------------------------R--------SQVIPDIIRCYS--SGGRTIIFTETKESASQLADLLPG--- 385 (620)
Q Consensus 349 ------------------------------~--------~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~--- 385 (620)
+ ...+..++.... ...++||||+++..|+.++..|..
T Consensus 289 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~ 368 (1010)
T 2xgj_A 289 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 368 (1010)
T ss_dssp HHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCC
Confidence 0 122233333221 345899999999999999988763
Q ss_pred ----------------------------------------chhhccccchHHHHHHHHHhhcCCceEEEecccccccCCC
Q 007044 386 ----------------------------------------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (620)
Q Consensus 386 ----------------------------------------~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi 425 (620)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 369 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDi 448 (1010)
T 2xgj_A 369 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 448 (1010)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTC
T ss_pred CChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCC
Confidence 4568999999999999999999999999999999999999
Q ss_pred CCccEEEE----cCC----CCCHHHHHHHhcccccCCC--ccEEEEEeCCC--chHHHHH
Q 007044 426 NDVQLIIQ----CEP----PRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR--KSSVSKI 473 (620)
Q Consensus 426 ~~v~~VI~----~d~----P~s~~~yiqr~GRtgR~g~--~G~~i~l~~~~--~~~~~~i 473 (620)
|++++||+ ||. |.++..|+||+|||||.|. .|.|++|+++. ...+..+
T Consensus 449 P~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 449 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999 999 9999999999999999997 59999999876 3344444
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-44 Score=419.43 Aligned_cols=329 Identities=19% Similarity=0.236 Sum_probs=208.4
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
.-.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|+++.+..... ..+.++|||+||++|+.|++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~vLvl~Pt~~L~~Q~~ 313 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQK 313 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------SCCCCEEEECSSHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHH
Confidence 3457899999999999999999999999999999999999999988776431 23557999999999999999
Q ss_pred HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc-cCCCccEEEeccchhhhhcCcHHHHH
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE 283 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l~ 283 (620)
++|..++...++++..++|+.+...+...+..+++|+|+||++|.+++.++.+ .+.++++||+||||++...+....+.
T Consensus 314 ~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~ 393 (936)
T 4a2w_A 314 NVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393 (936)
T ss_dssp HHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHH
Confidence 99999988788999999999977766666666799999999999999998777 78899999999999998776433332
Q ss_pred -HHHHhc-c-ccCCceEEeecCCCCh-----------HHHHHHHHhcccCCcEEEEecCcc-----cccccceEEEEEe-
Q 007044 284 -LILGKV-E-DANKVQTLLFSATLPS-----------WVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP- 343 (620)
Q Consensus 284 -~il~~~-~-~~~~~q~ll~SATl~~-----------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~i~~~~~~- 343 (620)
.++... . ..+.+|+++||||++. .+..+...+ +...+....... ...........+.
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L---~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 470 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL---DIQAISTVRENIQELQRFMNKPEIDVRLVKR 470 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH---TCSEEECCCSSHHHHHHHSCCCCEEEEECCC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc---CCceeecccccHHHHHHhccCCcceEEeccc
Confidence 222221 0 1225799999999852 121211111 111111100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007044 344 -------------------------------------------------------------------------------- 343 (620)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (620)
T Consensus 471 ~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 550 (936)
T 4a2w_A 471 RIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 550 (936)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------CCchhhhhhHHHHHHhc---CC
Q 007044 344 ----------------------------------------------------------CSSSARSQVIPDIIRCY---SS 362 (620)
Q Consensus 344 ----------------------------------------------------------~~~~~~~~~l~~ll~~~---~~ 362 (620)
.....+...|..++... ..
T Consensus 551 ~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~ 630 (936)
T 4a2w_A 551 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 630 (936)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCT
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCC
Confidence 00122333444455442 35
Q ss_pred CCeEEEEEcccccHHHHHHhccc----------------chhhccccchHHHHHHHHHhhc-CCceEEEecccccccCCC
Q 007044 363 GGRTIIFTETKESASQLADLLPG----------------ARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDI 425 (620)
Q Consensus 363 ~~~~iVF~~t~~~~~~l~~~l~~----------------~~~lh~~l~~~~R~~~~~~F~~-g~~~vLvaTdv~~rGlDi 425 (620)
+.++||||+++..++.|+..|.. ...+||+|++.+|..++++|++ |.++|||||+++++|||+
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl 710 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 710 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc
Confidence 68999999999999999999862 3456999999999999999999 999999999999999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 426 ~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|+|++||+||+|+|+..|+||+|| ||. +.|.+++|++..
T Consensus 711 p~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 711 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp CCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 999999999999999999999999 999 789999999876
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.5e-43 Score=380.84 Aligned_cols=319 Identities=23% Similarity=0.279 Sum_probs=243.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.|+|+|.++++.++.+ ++|+++|||+|||++++++++..+.. .+.++|||+||++|+.|+.+++.++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------------~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------------YGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 7999999999999999 99999999999999999999988762 1235999999999999999999998
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhcc
Q 007044 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (620)
Q Consensus 211 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~ 290 (620)
....+.++..++|+....... ....+++|+|+||++|...+.++.+.+.++++||+||||++.+......+...+....
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred hCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 754556888899988766433 3334689999999999999998888899999999999999987655555555555444
Q ss_pred ccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccc-----cccceEEEEEeC---------------------
Q 007044 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK-----ASTNVRHIVLPC--------------------- 344 (620)
Q Consensus 291 ~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~~~~~--------------------- 344 (620)
. ..++++||||++.....+...+-.-....+......... ............
T Consensus 155 ~--~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (494)
T 1wp9_A 155 K--NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKP 232 (494)
T ss_dssp S--SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3 579999999987433333222211111111111100000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007044 345 -------------------------------------------------------------------------------- 344 (620)
Q Consensus 345 -------------------------------------------------------------------------------- 344 (620)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (494)
T 1wp9_A 233 LAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGS 312 (494)
T ss_dssp HHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcccc
Confidence
Q ss_pred ---------------------------CchhhhhhHHHHHHhc---CCCCeEEEEEcccccHHHHHHhcc----cchhhc
Q 007044 345 ---------------------------SSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GARALH 390 (620)
Q Consensus 345 ---------------------------~~~~~~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh 390 (620)
....+...+..++... ..+.++||||+++..++.++..|. .+..+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 392 (494)
T 1wp9_A 313 TKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 392 (494)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEe
Confidence 1223444555555553 467899999999999999999997 467899
Q ss_pred c--------ccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEE
Q 007044 391 G--------DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (620)
Q Consensus 391 ~--------~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l 462 (620)
| +|++.+|..+++.|++|.++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+ |.++.|
T Consensus 393 g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l 471 (494)
T 1wp9_A 393 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIIL 471 (494)
T ss_dssp CSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEE
T ss_pred ccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEE
Confidence 9 9999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred eCCC
Q 007044 463 YDPR 466 (620)
Q Consensus 463 ~~~~ 466 (620)
+.+.
T Consensus 472 ~~~~ 475 (494)
T 1wp9_A 472 MAKG 475 (494)
T ss_dssp EETT
T ss_pred EecC
Confidence 9887
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.8e-42 Score=403.57 Aligned_cols=308 Identities=20% Similarity=0.229 Sum_probs=239.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.+| +|+|+|.++|+.+++|+|++++||||||||++|++|+...+..+ +++||++||++|+.|+++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------------~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------------TKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-------------CEEEEEESCGGGHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-------------CeEEEEeCCHHHHHHHHHH
Confidence 355 58999999999999999999999999999999999998876543 4699999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHH
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 286 (620)
+..++. ++++..++|+.... ..++|+|+||++|.+++.++...+.++++||+||||++.+++|...++.++
T Consensus 102 l~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 102 FKETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp HHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHH
T ss_pred HHHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHH
Confidence 987653 67889999988643 348999999999999998888888999999999999999999999999999
Q ss_pred HhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE------------------------
Q 007044 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL------------------------ 342 (620)
Q Consensus 287 ~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~------------------------ 342 (620)
..++. .+|+++||||+|+.. .+...+.......+.+.... .....+.+.++
T Consensus 173 ~~l~~--~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~--~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 173 IMLPQ--HVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTP--KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp HHSCT--TCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECS--SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred Hhccc--CCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecC--CCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 99886 789999999998754 33333321110111111100 00111111111
Q ss_pred ---------------------------------------------------------------------eCCchhhhhhH
Q 007044 343 ---------------------------------------------------------------------PCSSSARSQVI 353 (620)
Q Consensus 343 ---------------------------------------------------------------------~~~~~~~~~~l 353 (620)
.+........+
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEI 327 (997)
T ss_dssp HHHC-----------------------------------------------------------------CCCCTTHHHHH
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHH
Confidence 01111222234
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHhccc-------------------------------------------chhhc
Q 007044 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG-------------------------------------------ARALH 390 (620)
Q Consensus 354 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-------------------------------------------~~~lh 390 (620)
...+... ...++||||+|+..|+.++..|.. +..+|
T Consensus 328 i~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 328 VNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp HHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 4444433 457999999999999999988852 56789
Q ss_pred cccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCC---------CHHHHHHHhcccccCC--CccEE
Q 007044 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR---------DVEAYIHRSGRTGRAG--NTGVA 459 (620)
Q Consensus 391 ~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~---------s~~~yiqr~GRtgR~g--~~G~~ 459 (620)
|+|++.+|..+++.|+.|.++|||||+++++|||+|+ ..||++++|. ++.+|+||+|||||.| ..|.|
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~v 485 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTV 485 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEE
Confidence 9999999999999999999999999999999999999 5555555544 9999999999999998 57889
Q ss_pred EEEeC
Q 007044 460 VMLYD 464 (620)
Q Consensus 460 i~l~~ 464 (620)
++++.
T Consensus 486 i~l~~ 490 (997)
T 4a4z_A 486 IVMAY 490 (997)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88884
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=402.21 Aligned_cols=314 Identities=21% Similarity=0.270 Sum_probs=220.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH-HHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV-HEDFD 208 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv-~~~~~ 208 (620)
..|+|+|.++++.++.|+|+|+++|||+|||++|++|+++.+..+.. ...+.++|||+||++|+.|+ .++|.
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-------~~~~~~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-------HTCCCCBCCEESCSHHHHHHHHHTHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------cCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999988765421 01234699999999999999 99999
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHH------hcCCccCCCccEEEeccchhhhhcCcHHHH
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI------ERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l------~~~~~~l~~l~~lVlDEah~~l~~~f~~~l 282 (620)
.++.. ++++..++|+.....+...+..+++|+|+||++|.+++ ..+.+.+.++++|||||||++...+++..+
T Consensus 79 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 79 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred HHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 98865 58999999998776666666678999999999999988 445577889999999999998665433332
Q ss_pred HH-HHHhc----c-------ccCCceEEeecCCCChH-----------HHHHHHHhcccCCcEEEEecCc-----ccccc
Q 007044 283 EL-ILGKV----E-------DANKVQTLLFSATLPSW-----------VKHISTKFLKSDKKTIDLVGNE-----KMKAS 334 (620)
Q Consensus 283 ~~-il~~~----~-------~~~~~q~ll~SATl~~~-----------~~~~~~~~~~~~~~~i~~~~~~-----~~~~~ 334 (620)
.. ++... . ..+.+++++||||++.. +..+...+- ...+...... .....
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~---~~~i~~~~~~~~~l~~~~~~ 234 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLD---AFTIKTVKENLDQLKNQIQE 234 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHT---CSCCCCCCTTHHHHHHHSCC
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcC---CCEEEeecCchHHHhhhcCC
Confidence 22 22211 0 00257999999998861 222222211 1000000000 00000
Q ss_pred cceEEEEEeC----------------------------------------------------------------------
Q 007044 335 TNVRHIVLPC---------------------------------------------------------------------- 344 (620)
Q Consensus 335 ~~i~~~~~~~---------------------------------------------------------------------- 344 (620)
.......+..
T Consensus 235 p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (699)
T 4gl2_A 235 PCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIN 314 (699)
T ss_dssp CEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0000000000
Q ss_pred ---------------------------------------------------------------CchhhhhhHHHHHHhc-
Q 007044 345 ---------------------------------------------------------------SSSARSQVIPDIIRCY- 360 (620)
Q Consensus 345 ---------------------------------------------------------------~~~~~~~~l~~ll~~~- 360 (620)
....+...|..++...
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~ 394 (699)
T 4gl2_A 315 DTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQY 394 (699)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 0112233333444331
Q ss_pred C--C-CCeEEEEEcccccHHHHHHhcc----------cchhhccc--------cchHHHHHHHHHhhcCCceEEEecccc
Q 007044 361 S--S-GGRTIIFTETKESASQLADLLP----------GARALHGD--------IQQSQREVTLAGFRSGKFMTLVATNVA 419 (620)
Q Consensus 361 ~--~-~~~~iVF~~t~~~~~~l~~~l~----------~~~~lh~~--------l~~~~R~~~~~~F~~g~~~vLvaTdv~ 419 (620)
. . ++++||||+++..++.++..|. .+..+||+ |++.+|..+++.|++|+++|||||+++
T Consensus 395 ~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~ 474 (699)
T 4gl2_A 395 TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVA 474 (699)
T ss_dssp HHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSC
T ss_pred hcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Confidence 1 2 6899999999999999999875 35578999 999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCCCHHHHHHHhcccccCC
Q 007044 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (620)
Q Consensus 420 ~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g 454 (620)
++|||+|+|++||+||+|+|+..|+||+||+||.|
T Consensus 475 ~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 475 EEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred ccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999976654
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-42 Score=393.27 Aligned_cols=316 Identities=22% Similarity=0.292 Sum_probs=240.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 007044 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (620)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~g------~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~L 191 (620)
..+...+...|| .||++|.++++.++.+ .+++++|+||||||++|++|++..+..+ .+++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-------------~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-------------FQTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-------------SCEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CeEE
Confidence 445556678999 9999999999998865 6999999999999999999999988654 3599
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHH---HHhcC-CCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 192 il~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
|++||++||.|+++.+..++...++++..++|+.+..... ..+.. .++|+|+||+.+.+ .+.+.++++||+
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 9999999999999999999888899999999998876543 33334 59999999998855 456889999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCch
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 347 (620)
||+|++. +.. ...+... ...+++++||||+++....+. +. .+.....+... ......+...+. ...
T Consensus 497 DEaHr~g---~~q--r~~l~~~--~~~~~vL~mSATp~p~tl~~~--~~-g~~~~s~i~~~--p~~r~~i~~~~~--~~~ 562 (780)
T 1gm5_A 497 DEQHRFG---VKQ--REALMNK--GKMVDTLVMSATPIPRSMALA--FY-GDLDVTVIDEM--PPGRKEVQTMLV--PMD 562 (780)
T ss_dssp ESCCCC----------CCCCSS--SSCCCEEEEESSCCCHHHHHH--HT-CCSSCEEECCC--CSSCCCCEECCC--CSS
T ss_pred cccchhh---HHH--HHHHHHh--CCCCCEEEEeCCCCHHHHHHH--Hh-CCcceeeeecc--CCCCcceEEEEe--ccc
Confidence 9999863 211 1111111 225799999999766443322 22 22221111111 111122332222 222
Q ss_pred hhhhhHHHHHHhcCCCCeEEEEEcccc--------cHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceE
Q 007044 348 ARSQVIPDIIRCYSSGGRTIIFTETKE--------SASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMT 412 (620)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~t~~--------~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~v 412 (620)
....++..+......+.+++|||++.. .++.++..|. .+..+||+|++.+|..+++.|++|+++|
T Consensus 563 ~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~I 642 (780)
T 1gm5_A 563 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 642 (780)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 334445555555667889999999764 4667776665 3678999999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEEcCCCC-CHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 413 LVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 413 LvaTdv~~rGlDi~~v~~VI~~d~P~-s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
||||+++++|||+|++++||+|+.|+ +...|.||+||+||.|+.|.|++++++.
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999999999996 6888999999999999999999999864
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.3e-42 Score=416.08 Aligned_cols=339 Identities=19% Similarity=0.222 Sum_probs=257.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEc
Q 007044 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~-g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~ 194 (620)
|.....++|...+|..++|+|.++++.++. ++|++++||||||||++|.+|++..+.... +.++||++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----------~~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----------EGRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------TCCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------CCEEEEEc
Confidence 456777888888999999999999999985 578999999999999999999999987642 23599999
Q ss_pred ccHHHHHHHHHHHHH-hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC--CccCCCccEEEeccch
Q 007044 195 PTRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--NIDLSSLKFRVLDEAD 271 (620)
Q Consensus 195 PtreLa~Qv~~~~~~-~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~--~~~l~~l~~lVlDEah 271 (620)
|||+||.|+++.|.. ++...+++|..++|+...... ...+++|+||||+++..++.+. ...++++++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999999964 666689999999998765433 2345899999999997777652 3347899999999999
Q ss_pred hhhhcCcHHHHHHHHHhcc-----ccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 272 EMLRMGFVEDVELILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 272 ~~l~~~f~~~l~~il~~~~-----~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
.+.+ .++..++.++..+. ...++|+++||||+++ ...++............+... ..+..+...+.....
T Consensus 1057 ~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~---~RPvpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1057 LIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN---VRPVPLELHIQGFNI 1131 (1724)
T ss_dssp GGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG---GCSSCEEEEEEEECC
T ss_pred hcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC---CCCCCeEEEEEeccC
Confidence 8865 46666766665442 1236899999999987 345555443222222222221 112223333222221
Q ss_pred hh-------hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-----------------------------------
Q 007044 347 SA-------RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------- 384 (620)
Q Consensus 347 ~~-------~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----------------------------------- 384 (620)
.. ....+...+.....++++||||+|+..|+.++..|.
T Consensus 1132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~ 1211 (1724)
T 4f92_B 1132 SHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKET 1211 (1724)
T ss_dssp CSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHH
T ss_pred CCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHH
Confidence 11 112234455556678899999999999988775542
Q ss_pred ---cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----------cCCCCCHHHHHHHhcccc
Q 007044 385 ---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----------CEPPRDVEAYIHRSGRTG 451 (620)
Q Consensus 385 ---~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----------~d~P~s~~~yiqr~GRtg 451 (620)
++..+||+|++.+|..+.+.|++|.++|||||+++++|||+|++++||. +..|.++.+|+||+||||
T Consensus 1212 l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1212 LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp HHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred HhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 3567899999999999999999999999999999999999999999993 335789999999999999
Q ss_pred cCCC--ccEEEEEeCCC-chHHHHH
Q 007044 452 RAGN--TGVAVMLYDPR-KSSVSKI 473 (620)
Q Consensus 452 R~g~--~G~~i~l~~~~-~~~~~~i 473 (620)
|+|. .|.|++++.+. ...++++
T Consensus 1292 R~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1292 RPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp CTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCCceEEEEEecchHHHHHHHH
Confidence 9997 79999999887 5444444
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.1e-43 Score=391.04 Aligned_cols=310 Identities=16% Similarity=0.146 Sum_probs=233.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 007044 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (620)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil 193 (620)
+++++.+.++|... ...++|+|+.++|.+++|+|+|++||||||||++|++|+++.+... ++++||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------~~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------------RLRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCeEEEE
Confidence 55677666666554 5889999998999999999999999999999999999999988652 3469999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 194 ~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
+|||+||.|+++.+. +..+. +.++. .. .....+..+.++|.+.+...+... ..++++++||+||||+|
T Consensus 222 ~PtreLa~Qi~~~l~------~~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALR------GLPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTT------TSCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhc------CCcee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 999999999998875 23333 21211 00 011234567788888887766654 35899999999999998
Q ss_pred hhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhH
Q 007044 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 353 (620)
+++|...+..++..++. .++|+++||||++..+.. +...++..+.+... .+.......+
T Consensus 290 -~~~~~~~~~~i~~~l~~-~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~---------------~~~~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVEM-GEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE---------------IPERSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC---------------CCSSCCSSSC
T ss_pred -CccHHHHHHHHHHHhcc-cCccEEEEECCCchhhhh----hhccCCceeeeccc---------------CCHHHHHHHH
Confidence 88888889888888753 268999999999876432 22223333333211 0111112233
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCcc
Q 007044 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (620)
Q Consensus 354 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~ 429 (620)
..+.. .++++||||+|+..++.++..|. .+..+||+ +|.++++.|++|+.+||||||++++|||+| ++
T Consensus 349 ~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 349 DWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AG 420 (618)
T ss_dssp HHHHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ce
Confidence 33333 35799999999999999999997 56778874 788899999999999999999999999997 99
Q ss_pred EE--------------------EEcCCCCCHHHHHHHhcccccCCC-ccEEEEEeC---CC-chHHHHHHHHh
Q 007044 430 LI--------------------IQCEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYD---PR-KSSVSKIERES 477 (620)
Q Consensus 430 ~V--------------------I~~d~P~s~~~yiqr~GRtgR~g~-~G~~i~l~~---~~-~~~~~~i~~~~ 477 (620)
+| |||++|.+.++|+||+|||||+|. .|.|++|++ +. ...+..+++.+
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 88 788889999999999999999975 999999997 55 67788888764
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-41 Score=410.80 Aligned_cols=337 Identities=18% Similarity=0.251 Sum_probs=252.9
Q ss_pred CCCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
||..++++|.+++|.++ .++|++++||||||||++|.+|++..+....... ......+.++||++|+++||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~--~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD--GTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT--SSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc--ccccCCCCEEEEECCHHHHHHHHHHH
Confidence 89999999999999987 5789999999999999999999999997643211 11224567899999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC--ccCCCccEEEeccchhhhhcCcHHHHHH
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~--~~l~~l~~lVlDEah~~l~~~f~~~l~~ 284 (620)
|.+.+...|++|..++|+.+...+ ...+++|+|+||+++..++.+.. ..++++++||+||+|.+.+ .++..++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 998888889999999999875432 23469999999999855554432 2478999999999996654 67777777
Q ss_pred HHHhcc-----ccCCceEEeecCCCChHHHHHHHHhcccCC-cEEEEecCcccccccceEEEEEeCCchh---hh----h
Q 007044 285 ILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSSA---RS----Q 351 (620)
Q Consensus 285 il~~~~-----~~~~~q~ll~SATl~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~---~~----~ 351 (620)
++..+. ...++|++++|||+|+ ...++. |+...+ ..+.+.... ..+..+.+.++...... .. .
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHH
Confidence 665431 1236899999999997 344444 443321 222222221 12233444443332221 11 2
Q ss_pred hHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-----------------------------------------cchhhc
Q 007044 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----------------------------------------GARALH 390 (620)
Q Consensus 352 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-----------------------------------------~~~~lh 390 (620)
.+...+.....++++||||+|++.|+.++..|. ++.++|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 233333444456799999999999988876652 255789
Q ss_pred cccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----cC------CCCCHHHHHHHhcccccCCC--ccE
Q 007044 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE------PPRDVEAYIHRSGRTGRAGN--TGV 458 (620)
Q Consensus 391 ~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----~d------~P~s~~~yiqr~GRtgR~g~--~G~ 458 (620)
|+|++.+|..+.+.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.|. .|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999996 44 45689999999999999985 799
Q ss_pred EEEEeCCC-chHHHHHH
Q 007044 459 AVMLYDPR-KSSVSKIE 474 (620)
Q Consensus 459 ~i~l~~~~-~~~~~~i~ 474 (620)
+++++++. ......+.
T Consensus 466 ~ii~~~~~~~~~~~~ll 482 (1724)
T 4f92_B 466 GILITSHGELQYYLSLL 482 (1724)
T ss_dssp EEEEEESTTCCHHHHHT
T ss_pred EEEEecchhHHHHHHHH
Confidence 99999887 54444443
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.1e-40 Score=391.75 Aligned_cols=319 Identities=21% Similarity=0.220 Sum_probs=251.3
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHHc----CC--cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 114 FRISVPLREKLK-SKGIESLFPIQAMTFDMVLD----GS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 114 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~----g~--dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
++.+....+.+. ..|| +|||+|.++++.++. |+ |++++++||+|||++|+++++..+..+
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g------------ 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH------------ 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT------------
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC------------
Confidence 556777777664 4577 479999999999886 66 999999999999999999998876543
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHH---HHhcC-CCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
.+++|++||++||.|+++.|..+....++++..++|..+...+. ..+.. .++|+|+||+.|. +.+.+.++
T Consensus 653 -~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l 726 (1151)
T 2eyq_A 653 -KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDL 726 (1151)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSE
T ss_pred -CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCcccccc
Confidence 36999999999999999999988877789999998876655443 33434 5999999998663 35678999
Q ss_pred cEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 263 ~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
++||+||||++. .....++..++. ++++++||||+++....+....+ .+...+ ... ......+...+.
T Consensus 727 ~lvIiDEaH~~g-----~~~~~~l~~l~~--~~~vl~lSATp~p~~l~~~~~~~-~~~~~i---~~~-~~~r~~i~~~~~ 794 (1151)
T 2eyq_A 727 GLLIVDEEHRFG-----VRHKERIKAMRA--NVDILTLTATPIPRTLNMAMSGM-RDLSII---ATP-PARRLAVKTFVR 794 (1151)
T ss_dssp EEEEEESGGGSC-----HHHHHHHHHHHT--TSEEEEEESSCCCHHHHHHHTTT-SEEEEC---CCC-CCBCBCEEEEEE
T ss_pred ceEEEechHhcC-----hHHHHHHHHhcC--CCCEEEEcCCCChhhHHHHHhcC-CCceEE---ecC-CCCccccEEEEe
Confidence 999999999852 234455555554 57999999998776655554443 122221 111 112234444444
Q ss_pred eCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEec
Q 007044 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (620)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT 416 (620)
... .......++.....+++++|||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||
T Consensus 795 ~~~---~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT 871 (1151)
T 2eyq_A 795 EYD---SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 871 (1151)
T ss_dssp ECC---HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES
T ss_pred cCC---HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEC
Confidence 333 234455566666678999999999999999998886 46789999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCC-CCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 417 NVAARGLDINDVQLIIQCEP-PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 417 dv~~rGlDi~~v~~VI~~d~-P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+++++|||+|++++||+++. +.+...|+||+||+||.|+.|.|++++.+.
T Consensus 872 ~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 872 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp STTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999998 579999999999999999999999999875
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.1e-42 Score=368.55 Aligned_cols=285 Identities=18% Similarity=0.170 Sum_probs=211.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDL-VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dv-i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
|+.+|+|+|+ +||.+++++|+ +++||||||||++|++|++..+... ++++||++|||+||.|+++.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~------------~~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR------------RLRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc------------CCcEEEECCCHHHHHHHHHH
Confidence 7889999985 79999999887 9999999999999999999876542 34699999999999999998
Q ss_pred HHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHH
Q 007044 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 286 (620)
+. ++.+....+.... ....+..|.++|++.+.+++.+. ..+.++++||+||||++ +.++...+..+.
T Consensus 68 l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 74 3333322221110 12345689999999998888765 45889999999999987 554444444443
Q ss_pred HhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeE
Q 007044 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366 (620)
Q Consensus 287 ~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 366 (620)
.... .+++|+++||||+|..+.. +....+..+..... .+ ......+...+.. .++++
T Consensus 135 ~~~~-~~~~~~i~~SAT~~~~~~~----~~~~~~~~~~~~~~---------------~p-~~~~~~~~~~l~~--~~~~~ 191 (451)
T 2jlq_A 135 TRVE-MGEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE---------------IP-ERSWNTGFDWITD--YQGKT 191 (451)
T ss_dssp HHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC---------------CC-SSCCSSSCHHHHH--CCSCE
T ss_pred Hhhc-CCCceEEEEccCCCccchh----hhcCCCceEecCcc---------------CC-chhhHHHHHHHHh--CCCCE
Confidence 3322 2268999999999874322 12123333332210 00 0001112223333 35799
Q ss_pred EEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcC-------
Q 007044 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE------- 435 (620)
Q Consensus 367 iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d------- 435 (620)
||||+|+..++.++..|. .+..+||++ +..+++.|++|+.+|||||+++++|||+|+ ++|||||
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 999999999999999997 455677764 467999999999999999999999999999 9999999
Q ss_pred -------------CCCCHHHHHHHhcccccCCC-ccEEEEEeCCC
Q 007044 436 -------------PPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (620)
Q Consensus 436 -------------~P~s~~~yiqr~GRtgR~g~-~G~~i~l~~~~ 466 (620)
.|.+..+|+||+|||||.|+ .|.|++|+...
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 89998887543
No 43
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-40 Score=335.26 Aligned_cols=265 Identities=32% Similarity=0.490 Sum_probs=237.2
Q ss_pred ceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCce
Q 007044 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (620)
Q Consensus 336 ~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~ 411 (620)
++.|+++.+....|...|..++.... ++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46789999999999999999998874 7899999999999999999986 577899999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCCHH
Q 007044 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPA 490 (620)
Q Consensus 412 vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~~~ 490 (620)
|||||+++++|||+|++++|||||+|++..+|+||+|||||.|+.|.|++|+++. ...+..+++.++.+++++..|+..
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhhhcCCCchHHHHHHHHHHhccCCCHHHHHHHHHHHHcCCcccccccccCCCCCcEEEEEEcCCCC
Q 007044 491 DIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570 (620)
Q Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 570 (620)
++...........+..+.......|+..+++++++. +.+.++++|+.+++... .+++++++..++++++++.|++.
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~---~~e~laaal~~l~~~~~-~~~~l~~~~~~~~~~~~~~g~~~ 236 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEG---RVEVVAALLALLLGGAP-AERSLLTGEEGWRTYKATGPRLS 236 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHT---CHHHHHHHHHHHHTCCC-CCBCTTTCCBSCBCEEEECTTCC
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC---cHHHHHHHHHHHhcCCc-CccccccCCCCcEEEEEecCCCC
Confidence 999988888888887766667788999999999883 56789999999999887 78888888899999999999986
Q ss_pred CCcchHHHHHHhhCCcccccceeeEEEecCCCeEEEEccCCChH
Q 007044 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLD 614 (620)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 614 (620)
. |+++| .|++. |. .||.|+|.+ +++|||||++.++
T Consensus 237 ~-~~~~~-~i~~~-~~----~ig~i~~~~--~~~~~dvp~~~~~ 271 (300)
T 3i32_A 237 L-PRLVA-LLKGQ-GL----EVGKVAEAE--GGFYVDLRPEARP 271 (300)
T ss_dssp H-HHHHH-HHHHT-TC----CCCCEEEET--TEEEECBCSSCCC
T ss_pred C-cHHHH-HHHhc-CC----eECcEEEeC--CEEEEEeCHHHcC
Confidence 5 99998 66654 43 899999988 8999999999875
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.5e-42 Score=377.38 Aligned_cols=305 Identities=19% Similarity=0.215 Sum_probs=230.2
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHH
Q 007044 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (620)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv 203 (620)
+.......++++|..+++.+..++|++++||||||||++|.+|+++. +.++||++|||+||.|+
T Consensus 210 l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------------g~~vLVl~PTReLA~Qi 273 (666)
T 3o8b_A 210 METTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------------GYKVLVLNPSVAATLGF 273 (666)
T ss_dssp HHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------------TCCEEEEESCHHHHHHH
T ss_pred hhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------------CCeEEEEcchHHHHHHH
Confidence 33333335566676666777788999999999999999999998862 12599999999999999
Q ss_pred HHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHH
Q 007044 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (620)
Q Consensus 204 ~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~ 283 (620)
++.+.... +..+...+|+.. +..+++|+|+|||+| +.++.+.++++++||||||| +++++|...+.
T Consensus 274 a~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~ 339 (666)
T 3o8b_A 274 GAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIG 339 (666)
T ss_dssp HHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHH
T ss_pred HHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHH
Confidence 98776543 355666777754 356799999999998 45677888999999999996 55889999999
Q ss_pred HHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCC
Q 007044 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363 (620)
Q Consensus 284 ~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~ 363 (620)
.++..++......+++||||++..+. ...+....+.... ...+. .+ .. ... +.. ..+
T Consensus 340 ~Il~~l~~~~~~llil~SAT~~~~i~-------~~~p~i~~v~~~~----~~~i~-~~---~~--~~~-----l~~-~~~ 396 (666)
T 3o8b_A 340 TVLDQAETAGARLVVLATATPPGSVT-------VPHPNIEEVALSN----TGEIP-FY---GK--AIP-----IEA-IRG 396 (666)
T ss_dssp HHHHHTTTTTCSEEEEEESSCTTCCC-------CCCTTEEEEECBS----CSSEE-ET---TE--EEC-----GGG-SSS
T ss_pred HHHHhhhhcCCceEEEECCCCCcccc-------cCCcceEEEeecc----cchhH-HH---Hh--hhh-----hhh-ccC
Confidence 99999987433347888999987321 1122222211100 00111 00 00 000 111 256
Q ss_pred CeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE-------
Q 007044 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII------- 432 (620)
Q Consensus 364 ~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI------- 432 (620)
+++||||+|++.++.++..|. .+..+||+|++.+ |+++..+||||||+++||||++ |++||
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~ 468 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVT 468 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccc
Confidence 899999999999999999997 5778999999875 5556669999999999999997 99988
Q ss_pred ---EcC-----------CCCCHHHHHHHhcccccCCCccEEEEEeCCC-chH--H--HHHHHHhCCCceeeCCCCHHH
Q 007044 433 ---QCE-----------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSS--V--SKIERESGVKFEHISAPQPAD 491 (620)
Q Consensus 433 ---~~d-----------~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~--~--~~i~~~~~~~~~~~~~p~~~~ 491 (620)
||| +|.+.++|+||+||||| |++|. ++|+++. ... + ..+++..+..+.++.+|..+.
T Consensus 469 ~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~~ 544 (666)
T 3o8b_A 469 QTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAET 544 (666)
T ss_dssp EEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHHH
T ss_pred cccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchHH
Confidence 777 99999999999999999 99999 9999988 333 3 788888888888888876543
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.7e-42 Score=387.42 Aligned_cols=302 Identities=16% Similarity=0.175 Sum_probs=212.5
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHH------cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 123 KLKSKGIE-----SLFPIQA-----MTFDMVL------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 123 ~l~~~g~~-----~~~~~Q~-----~~i~~il------~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
+|...||. .|||+|+ ++||.++ .|+|+|++||||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 45566777 9999999 9999988 899999999999999999999999887542
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
++++||++|||+||.|+++.+..+ ++. ...+... .....+.-+-+.+.+.+...+... ..+.++++||
T Consensus 270 ~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvV 337 (673)
T 2wv9_A 270 RLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFV 337 (673)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEE
T ss_pred CCcEEEEccHHHHHHHHHHHHhcC----Cee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEE
Confidence 346999999999999999888643 221 1111000 000011123333344443333332 4689999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCc
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 346 (620)
+||||++ +..+...+..+...++. ..+|+++||||++..+..+ .........+ ......
T Consensus 338 iDEaH~~-~~~~~~~~~~l~~~~~~-~~~~vl~~SAT~~~~i~~~----~~~~~~i~~v---------------~~~~~~ 396 (673)
T 2wv9_A 338 MDEAHFT-DPASIAARGYIATRVEA-GEAAAIFMTATPPGTSDPF----PDTNSPVHDV---------------SSEIPD 396 (673)
T ss_dssp EESTTCC-CHHHHHHHHHHHHHHHT-TSCEEEEECSSCTTCCCSS----CCCSSCEEEE---------------ECCCCS
T ss_pred EeCCccc-CccHHHHHHHHHHhccc-cCCcEEEEcCCCChhhhhh----cccCCceEEE---------------eeecCH
Confidence 9999998 33333334444444431 2689999999998753221 1111111111 111122
Q ss_pred hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccccc
Q 007044 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (620)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rG 422 (620)
......+..+.. .++++||||+++..++.++..|. .+..+|| .+|..+++.|++|+++|||||+++++|
T Consensus 397 ~~~~~~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~G 469 (673)
T 2wv9_A 397 RAWSSGFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMG 469 (673)
T ss_dssp SCCSSCCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTT
T ss_pred HHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcc
Confidence 222333444433 46899999999999999999997 5778898 379999999999999999999999999
Q ss_pred CCCCCccEEEE--------------------cCCCCCHHHHHHHhcccccC-CCccEEEEEe---CCC-chHHHHHHHHh
Q 007044 423 LDINDVQLIIQ--------------------CEPPRDVEAYIHRSGRTGRA-GNTGVAVMLY---DPR-KSSVSKIERES 477 (620)
Q Consensus 423 lDi~~v~~VI~--------------------~d~P~s~~~yiqr~GRtgR~-g~~G~~i~l~---~~~-~~~~~~i~~~~ 477 (620)
||+| +++||| |++|.+.++|+||+||+||. |+.|.|++|+ ++. ...+..++...
T Consensus 470 IDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 470 ANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9999 999998 67999999999999999999 7899999996 455 56677777654
No 46
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.2e-40 Score=364.27 Aligned_cols=311 Identities=16% Similarity=0.164 Sum_probs=232.1
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
...|+|+|.++++.++.+++++++++||+|||++|++|+...+..+ ..++|||+||++|+.|+++.|.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------------~~~vlvl~P~~~L~~Q~~~~~~ 178 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------------EGKILIIVPTTALTTQMADDFV 178 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC------------SSEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC------------CCeEEEEECcHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999998877542 1369999999999999999999
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
.++...+..+..++|+.+...+ +..+++|+|+||+.|... ....+.++++||+||||++.. ..+..++..
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~ 248 (510)
T 2oca_A 179 DYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISG 248 (510)
T ss_dssp HTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGG
T ss_pred HhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHh
Confidence 9877667889999998776554 456799999999987543 335577899999999999875 557777777
Q ss_pred ccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecC----cccccccceEEEEEeCCc------------------
Q 007044 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN----EKMKASTNVRHIVLPCSS------------------ 346 (620)
Q Consensus 289 ~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~i~~~~~~~~~------------------ 346 (620)
++. ..++++||||++.....+........+..+.+... ........+....+....
T Consensus 249 ~~~--~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 249 LNN--CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp CTT--CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred ccc--CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 755 57999999998765322211111012222111110 001111112222222211
Q ss_pred ---hhhhhhHHHHHHhc-CCCC-eEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEec-
Q 007044 347 ---SARSQVIPDIIRCY-SSGG-RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT- 416 (620)
Q Consensus 347 ---~~~~~~l~~ll~~~-~~~~-~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaT- 416 (620)
..+...+..++... ..++ ++||||+ ...++.++..|. .+..+||++++.+|..+++.|++|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 11223344444332 2334 4555555 888888999887 56789999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeC
Q 007044 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464 (620)
Q Consensus 417 dv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~ 464 (620)
+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.++++++
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998875655555
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.6e-40 Score=372.15 Aligned_cols=329 Identities=18% Similarity=0.214 Sum_probs=244.6
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il-~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
....|.++++++.+.+.|..+| ..|+++|+++|+.++ .+++++++||||||||+ ++|++....... .+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~--------~~ 138 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP--------HL 138 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG--------GG
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc--------cC
Confidence 3457999999999999999998 789999999998877 55789999999999999 456552221110 01
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhh-cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
.+++++|++|+|+||.|+++.+.... ...+..++....... ....+++|+|+|||++.+++.... .+.++++
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~ 211 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMEDH-DLSRYSC 211 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHST-TCTTEEE
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhCc-cccCCCE
Confidence 24579999999999999998775433 223333332111111 112468999999999999887653 5899999
Q ss_pred EEeccchh-hhhcCc-HHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEE
Q 007044 265 RVLDEADE-MLRMGF-VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (620)
Q Consensus 265 lVlDEah~-~l~~~f-~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 342 (620)
|||||+|. +++..+ ...+..+....+ ..|+++||||++. ..+ ..++ .....+.+... ...+.+.+.
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~~---~~~iIl~SAT~~~--~~l-~~~~-~~~~vi~v~gr-----~~pv~~~~~ 279 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRRP---DLKIIIMSATLDA--EKF-QRYF-NDAPLLAVPGR-----TYPVELYYT 279 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHCT---TCEEEEEESCSCC--HHH-HHHT-TSCCEEECCCC-----CCCEEEECC
T ss_pred EEecCccccccchHHHHHHHHHHHHhCC---CceEEEEeccccH--HHH-HHHh-cCCCcccccCc-----ccceEEEEe
Confidence 99999996 666432 233444444433 5799999999975 333 3455 33444443322 124566665
Q ss_pred eCCchhhh-hhHHHHHHhc--CCCCeEEEEEcccccHHHHHHhcc---------------cchhhccccchHHHHHHHHH
Q 007044 343 PCSSSARS-QVIPDIIRCY--SSGGRTIIFTETKESASQLADLLP---------------GARALHGDIQQSQREVTLAG 404 (620)
Q Consensus 343 ~~~~~~~~-~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~---------------~~~~lh~~l~~~~R~~~~~~ 404 (620)
........ ..+..++... ..++++||||+++.+++.++..|. .+..+||+|++.+|..+++.
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 55444332 2233333322 257899999999999999998775 26789999999999999999
Q ss_pred hh-----cCCceEEEecccccccCCCCCccEEEEcCC------------------CCCHHHHHHHhcccccCCCccEEEE
Q 007044 405 FR-----SGKFMTLVATNVAARGLDINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAGNTGVAVM 461 (620)
Q Consensus 405 F~-----~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~------------------P~s~~~yiqr~GRtgR~g~~G~~i~ 461 (620)
|+ +|..+|||||+++++|||||+|++||++++ |.+..+|+||+|||||. ++|.|+.
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~ 438 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 438 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEE
Confidence 99 999999999999999999999999999888 89999999999999999 8999999
Q ss_pred EeCCC
Q 007044 462 LYDPR 466 (620)
Q Consensus 462 l~~~~ 466 (620)
|+++.
T Consensus 439 l~~~~ 443 (773)
T 2xau_A 439 LYTEE 443 (773)
T ss_dssp SSCHH
T ss_pred EecHH
Confidence 99866
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.6e-42 Score=367.14 Aligned_cols=275 Identities=19% Similarity=0.207 Sum_probs=196.3
Q ss_pred HHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEE
Q 007044 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (620)
Q Consensus 142 ~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~ 221 (620)
.+++|+|++++||||||||++|++|+++.+... ++++||++||++||.|+++.+..+ .+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~------------~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~ 65 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR------------RLRTLVLAPTRVVLSEMKEAFHGL------DVKFH 65 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTTS------CEEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc------------CCeEEEEcchHHHHHHHHHHHhcC------CeEEe
Confidence 356899999999999999999999999977642 346999999999999999988632 23221
Q ss_pred eCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCc--------cCCCccEEEeccchhhhhcCcHHHHHHHHHhccccC
Q 007044 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--------DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293 (620)
Q Consensus 222 ~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~--------~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~ 293 (620)
.+.. -.|+||+++++++.++.+ .+.++++||+||||++ +.+|...+..+...+.. .
T Consensus 66 ~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~-~ 129 (440)
T 1yks_A 66 TQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA-N 129 (440)
T ss_dssp SSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-T
T ss_pred cccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-C
Confidence 1111 037888877766554433 3889999999999998 44444444444433331 2
Q ss_pred CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEccc
Q 007044 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (620)
Q Consensus 294 ~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~ 373 (620)
++|+++||||+++.+..+ ...... +......+........+..+.. .++++||||+++
T Consensus 130 ~~~~l~~SAT~~~~~~~~----~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~ 187 (440)
T 1yks_A 130 ESATILMTATPPGTSDEF----PHSNGE---------------IEDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSI 187 (440)
T ss_dssp SCEEEEECSSCTTCCCSS----CCCSSC---------------EEEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCH
T ss_pred CceEEEEeCCCCchhhhh----hhcCCC---------------eeEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCH
Confidence 689999999998753321 111111 1111111222223334444443 357999999999
Q ss_pred ccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE----------------
Q 007044 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ---------------- 433 (620)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~---------------- 433 (620)
..++.++..|. .+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 188 ~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~ 262 (440)
T 1yks_A 188 RAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKV 262 (440)
T ss_dssp HHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccce
Confidence 99999999997 5778999 4688999999999999999999999999999 999996
Q ss_pred ---cCCCCCHHHHHHHhcccccC-CCccEEEEEe---CCC-chHHHHHHHHh
Q 007044 434 ---CEPPRDVEAYIHRSGRTGRA-GNTGVAVMLY---DPR-KSSVSKIERES 477 (620)
Q Consensus 434 ---~d~P~s~~~yiqr~GRtgR~-g~~G~~i~l~---~~~-~~~~~~i~~~~ 477 (620)
|+.|.+..+|+||+||+||. |+.|.|++|+ ++. ...+..++...
T Consensus 263 vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 263 AIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999998 6899999997 455 66777777764
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.2e-40 Score=356.67 Aligned_cols=295 Identities=22% Similarity=0.265 Sum_probs=223.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..|+|+|.++++.++.+++++++++||+|||++|+.++... + .++|||+||++|+.|+.++|..
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~-------------~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S-------------TPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---C-------------SCEEEEESSHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---C-------------CCEEEEECCHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999998764 1 2399999999999999999987
Q ss_pred hhcCCCce-EEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 210 YGGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 210 ~~~~~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
+ ++. +..++|+... ..+|+|+||+.+...+.. ...++++||+||||++.+.+|.. ++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp G----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred C----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 4 577 8888877642 489999999999887652 12458999999999999887753 5555
Q ss_pred ccccCCceEEeecCCCCh-------------------HHHHHHHHhcccCCcE--EEEecCccc----------------
Q 007044 289 VEDANKVQTLLFSATLPS-------------------WVKHISTKFLKSDKKT--IDLVGNEKM---------------- 331 (620)
Q Consensus 289 ~~~~~~~q~ll~SATl~~-------------------~~~~~~~~~~~~~~~~--i~~~~~~~~---------------- 331 (620)
++ ..+++++|||++. ....+...++ ..+.. +.+......
T Consensus 216 ~~---~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (472)
T 2fwr_A 216 SI---APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL-AKYTIKRIFVPLAEDERVEYEKREKVYKQFLR 291 (472)
T ss_dssp CC---CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC-CSEEECCEEECCCHHHHHHTTTTTHHHHSCSS
T ss_pred cC---CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC-CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 54 4689999999862 1222222222 11111 111000000
Q ss_pred ------ccccceEEEE---------------------EeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc
Q 007044 332 ------KASTNVRHIV---------------------LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (620)
Q Consensus 332 ------~~~~~i~~~~---------------------~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~ 384 (620)
.....+.+++ +.+....+...+..++... .+.++||||++...++.++..|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~ 370 (472)
T 2fwr_A 292 ARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL 370 (472)
T ss_dssp SCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT
T ss_pred hcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC
Confidence 0000000000 0012234556677777764 67899999999999999999994
Q ss_pred cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCc-c--EEEE
Q 007044 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT-G--VAVM 461 (620)
Q Consensus 385 ~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~-G--~~i~ 461 (620)
+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+. + .++.
T Consensus 371 -~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 371 -IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp -CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred -cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999999854 3 4455
Q ss_pred EeCCC
Q 007044 462 LYDPR 466 (620)
Q Consensus 462 l~~~~ 466 (620)
|++..
T Consensus 450 lv~~~ 454 (472)
T 2fwr_A 450 LISRG 454 (472)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 66655
No 50
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=323.22 Aligned_cols=204 Identities=29% Similarity=0.397 Sum_probs=182.0
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
....|++++|++.++++|..+||..|||+|.++||.++.| +|++++||||||||++|++|+++++...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------- 159 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------- 159 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----------
Confidence 3467999999999999999999999999999999999987 9999999999999999999999988653
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCc
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l 262 (620)
..++++|||+|||+||.|+++.+..++... ++.+...+||....... ..+++|+|||||+|++++.+ +.+.++++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 246789999999999999999999998764 68899999987654332 45789999999999999976 66789999
Q ss_pred cEEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEe
Q 007044 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (620)
Q Consensus 263 ~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~ 326 (620)
++|||||||+|++ .+|...+..|+..++. ++|+++||||+|..+..+++.++ .++..|.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~v~~~a~~~l-~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCC--CCEEEEEeccCCHHHHHHHHHHC-CCCeEEEec
Confidence 9999999999998 7899999999999876 78999999999999999999999 577777653
No 51
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.1e-37 Score=308.66 Aligned_cols=214 Identities=36% Similarity=0.578 Sum_probs=195.5
Q ss_pred CCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCC
Q 007044 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 185 (620)
.....|+++++++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+...... ...
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-----~~~ 100 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-----ERG 100 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-----CTT
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-----ccC
Confidence 345679999999999999999999999999999999999999999999999999999999999998764321 123
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
.++++||++|||+|+.|+++.+..++...++++..++||.+...+...+..+++|+|+||++|.+++.++...+.++++|
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 56789999999999999999999998888999999999999999888888899999999999999999988889999999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEec
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~ 327 (620)
|+||||+|++++|...+..++..++. .+|+++||||+|+.+..+++.++ .++..|.+..
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~l-~~~~~i~~~~ 239 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRP--DRQTLMWSATWPKEVRQLAEDFL-KDYIHINIGA 239 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHC-SSCEEEEECC
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCc--cceEEEEEeecCHHHHHHHHHHC-CCCEEEEecC
Confidence 99999999999999999999999976 78999999999999999999999 5777777643
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.4e-38 Score=343.93 Aligned_cols=269 Identities=17% Similarity=0.209 Sum_probs=192.5
Q ss_pred HHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEE
Q 007044 140 FDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219 (620)
Q Consensus 140 i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~ 219 (620)
...+..|+++|++||||||||++|++|+++.+... ++++||++|||+||.|+++.+. ++.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~------------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ------------RLRTAVLAPTRVVAAEMAEALR------GLPVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEECSHHHHHHHHHHTT------TSCEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC------------CCcEEEECchHHHHHHHHHHhc------CceEe
Confidence 34456789999999999999999999999887642 2469999999999999999885 33333
Q ss_pred EEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchh-----hhhcCcHHHHHHHHHhccccCC
Q 007044 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-----MLRMGFVEDVELILGKVEDANK 294 (620)
Q Consensus 220 ~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~-----~l~~~f~~~l~~il~~~~~~~~ 294 (620)
...+.... .-..+.-+.++|.+.+...+... ..++++++||+||||+ ++.++|...+.. .++
T Consensus 77 ~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-------~~~ 143 (459)
T 2z83_A 77 YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-------LGE 143 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-------TTS
T ss_pred EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHhc-------cCC
Confidence 22221110 01234568889999887777654 4588999999999998 555555433221 126
Q ss_pred ceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccc
Q 007044 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (620)
Q Consensus 295 ~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~ 374 (620)
+|+++||||+|..+..+ .......+.+. . ..+.. ....+..++.. .++++||||+++.
T Consensus 144 ~~~il~SAT~~~~~~~~----~~~~~pi~~~~-~--------------~~~~~-~~~~~~~~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 144 AAAIFMTATPPGTTDPF----PDSNAPIHDLQ-D--------------EIPDR-AWSSGYEWITE--YAGKTVWFVASVK 201 (459)
T ss_dssp CEEEEECSSCTTCCCSS----CCCSSCEEEEE-C--------------CCCSS-CCSSCCHHHHH--CCSCEEEECSCHH
T ss_pred ccEEEEEcCCCcchhhh----ccCCCCeEEec-c--------------cCCcc-hhHHHHHHHHh--cCCCEEEEeCChH
Confidence 89999999998753221 11111111110 0 01111 11112233333 2579999999999
Q ss_pred cHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEE-----------------
Q 007044 375 SASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----------------- 433 (620)
Q Consensus 375 ~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~----------------- 433 (620)
.++.++..|. .+..+||+ +|..+++.|++|+.+|||||+++++|||+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 9999999997 45667774 7888999999999999999999999999999 99999
Q ss_pred ---cCCCCCHHHHHHHhcccccCCC-ccEEEEEeCCC
Q 007044 434 ---CEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (620)
Q Consensus 434 ---~d~P~s~~~yiqr~GRtgR~g~-~G~~i~l~~~~ 466 (620)
|+.|.+..+|+||+|||||.|. +|.|++|+.+.
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999874
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=295.68 Aligned_cols=210 Identities=35% Similarity=0.561 Sum_probs=179.7
Q ss_pred CCCCcccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCC
Q 007044 106 EHPNAVSR-FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (620)
Q Consensus 106 ~~~~~~~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 184 (620)
.....|.+ +++++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+....... ..
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~----~~ 91 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR----EQ 91 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh----hc
Confidence 34456887 89999999999999999999999999999999999999999999999999999999886542211 12
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 185 ~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
..++++||++||++||.|+++.+..+. ..++.+..++||.....+...+..+++|+|+||++|.+++.++.+.++++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 356789999999999999999999986 4578999999999988888888889999999999999999988888999999
Q ss_pred EEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEE
Q 007044 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (620)
Q Consensus 265 lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i 323 (620)
||+||||++++++|...+..++..++. ++|+++||||+|+.+..++..++ .++..+
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l-~~p~~i 226 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRP--DRQTVMTSATWPDTVRQLALSYL-KDPMIV 226 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHHTTC-SSCEEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCc--CCeEEEEEeeCCHHHHHHHHHHC-CCCEEE
Confidence 999999999999999999999999976 68999999999999999999998 455554
No 54
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-36 Score=301.57 Aligned_cols=229 Identities=31% Similarity=0.494 Sum_probs=191.3
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|+++++++.++++|...||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+........ ......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~-~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-RYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc-cccccC
Confidence 3457999999999999999999999999999999999999999999999999999999999999876532110 011234
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
++++||++|||+|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.++.+.++++++||
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 57899999999999999999999998888999999999998888888888999999999999999999888899999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhcccc--CCceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEE
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDA--NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~--~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 339 (620)
+||||+|++++|...+..++..+... .++|+++||||+|+.+..+++.++ .++..+.+.... ....+++|
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~~--~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL-YNYIFMTVGRVG--STSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC-SSCEEEEEC-------------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEECCCC--CCcCCcee
Confidence 99999999999999999999864332 257999999999999999999999 467777654332 33344444
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.5e-37 Score=329.33 Aligned_cols=267 Identities=17% Similarity=0.176 Sum_probs=190.1
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.|++++++||||||||++|++|+++.+... ++++||++||++||.|+++.+. ++.+....|+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~------------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK------------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecC
Confidence 478999999999999999999999666432 3469999999999999988774 4555554444
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCC
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
... .-..+.-+.+.|.+.+...+.. ...+.++++||+||||++ ..++......+..... ...+|+++||||+
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-MGDAGAIFMTATP 134 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH-TTSCEEEEEESSC
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh-CCCCcEEEEeCCC
Confidence 221 1123456778899988777766 556899999999999997 4444444444444432 2268999999999
Q ss_pred ChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc
Q 007044 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (620)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~ 384 (620)
++.+.. +.......+.+. ...+.... ..+..++.. .++++||||+++..++.++..|.
T Consensus 135 ~~~~~~----~~~~~~~i~~~~---------------~~~~~~~~-~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 135 PGTTEA----FPPSNSPIIDEE---------------TRIPDKAW-NSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp TTCCCS----SCCCSSCCEEEE---------------CCCCSSCC-SSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHH
T ss_pred Ccchhh----hcCCCCceeecc---------------ccCCHHHH-HHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHH
Confidence 874221 111111111110 01111111 222233333 35799999999999999999997
Q ss_pred ----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccE-----------------EEEcCCCCCHHHH
Q 007044 385 ----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL-----------------IIQCEPPRDVEAY 443 (620)
Q Consensus 385 ----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~-----------------VI~~d~P~s~~~y 443 (620)
.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 57789987 578899999999999999999999999999 654 6788999999999
Q ss_pred HHHhcccccCCC-ccEEEEEeC
Q 007044 444 IHRSGRTGRAGN-TGVAVMLYD 464 (620)
Q Consensus 444 iqr~GRtgR~g~-~G~~i~l~~ 464 (620)
+||+||+||.|. .|.++++..
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEECS
T ss_pred HHhhhccCCCCCCCCeEEEEcC
Confidence 999999999986 555555553
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=6.1e-36 Score=297.06 Aligned_cols=203 Identities=36% Similarity=0.557 Sum_probs=186.7
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
..|+++++++.++++|..+||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+.... .++
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----------~~~ 112 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP----------QRL 112 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------CSS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----------CCc
Confidence 5699999999999999999999999999999999999999999999999999999999999887642 346
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc-CCccCCCccEEEe
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVL 267 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~~lVl 267 (620)
++||++|||+|+.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++.+ +.+.+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 799999999999999999999988889999999999998888888888999999999999999986 5677899999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEE
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~ 324 (620)
||||++++++|...+..++..++. .+|+++||||++..+..+++.++ .++..+.
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~v~~~~~~~l-~~p~~i~ 246 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPR--DRKTFLFSATMTKKVQKLQRAAL-KNPVKCA 246 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCS--SSEEEEEESSCCHHHHHHHHHHC-SSCEEEE
T ss_pred cChhhhhccChHHHHHHHHHhCCC--CCeEEEEeccCCHHHHHHHHHHC-CCCEEEE
Confidence 999999999999999999999876 68999999999999999999999 5666654
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-35 Score=286.64 Aligned_cols=201 Identities=32% Similarity=0.465 Sum_probs=184.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
..|+++++++.++++|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+... ..++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----------~~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK----------KDNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT----------SCSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc----------CCCe
Confidence 469999999999999999999999999999999999999999999999999999999999887643 2456
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
++||++||++|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||++|.+++.++...+.++++||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 79999999999999999999998776 78999999999988888888889999999999999999988888999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcE
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~ 322 (620)
||||++++.+|...+..++..++. +.|+++||||+|..+..+.+.++. ++..
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l~-~p~~ 204 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTLPK--NRQILLYSATFPLSVQKFMNSHLE-KPYE 204 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHSCT--TCEEEEEESCCCHHHHHHHHHHCS-SCEE
T ss_pred EChHHhHhhCcHHHHHHHHHhCCc--cceEEEEEeeCCHHHHHHHHHHcC-CCeE
Confidence 999999999999999999999876 689999999999999999999984 4443
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.9e-37 Score=343.97 Aligned_cols=294 Identities=14% Similarity=0.108 Sum_probs=212.9
Q ss_pred HHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceE
Q 007044 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218 (620)
Q Consensus 139 ~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v 218 (620)
.....++|++++++||||||||+ ++++.+.... +++|++|||+||.|+++.+... ++.+
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-------------~gl~l~PtR~LA~Qi~~~l~~~----g~~v 206 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-------------SGVYCGPLKLLAHEIFEKSNAA----GVPC 206 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-------------SEEEEESSHHHHHHHHHHHHHT----TCCE
T ss_pred HHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-------------CeEEEeCHHHHHHHHHHHHHhc----CCcE
Confidence 33456789999999999999998 4444444332 2699999999999999999875 5788
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEE
Q 007044 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298 (620)
Q Consensus 219 ~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~l 298 (620)
..++|+..... ....+..+++++|++.+ .....+++||+||||+|++.+|...+..++..++. ...+++
T Consensus 207 ~lltG~~~~iv--~TpGr~~~il~~T~e~~--------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-~~i~il 275 (677)
T 3rc3_A 207 DLVTGEERVTV--QPNGKQASHVSCTVEMC--------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-EEVHLC 275 (677)
T ss_dssp EEECSSCEECC--STTCCCCSEEEEEGGGC--------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-EEEEEE
T ss_pred EEEECCeeEEe--cCCCcccceeEecHhHh--------hhcccCCEEEEecceecCCccchHHHHHHHHccCc-cceEEE
Confidence 88888865410 00011255666665433 12467899999999999999999999999988873 268999
Q ss_pred eecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHH
Q 007044 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ 378 (620)
Q Consensus 299 l~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~ 378 (620)
++|||.+ .+..+..... ....+ ..... .... .+. ...+. .+... ....||||+++++++.
T Consensus 276 ~~SAT~~-~i~~l~~~~~--~~~~v--~~~~r---~~~l---~~~------~~~l~-~l~~~--~~g~iIf~~s~~~ie~ 335 (677)
T 3rc3_A 276 GEPAAID-LVMELMYTTG--EEVEV--RDYKR---LTPI---SVL------DHALE-SLDNL--RPGDCIVCFSKNDIYS 335 (677)
T ss_dssp ECGGGHH-HHHHHHHHHT--CCEEE--EECCC---SSCE---EEC------SSCCC-SGGGC--CTTEEEECSSHHHHHH
T ss_pred eccchHH-HHHHHHHhcC--CceEE--EEeee---cchH---HHH------HHHHH-HHHhc--CCCCEEEEcCHHHHHH
Confidence 9999953 3444444332 22222 11110 0000 010 00111 11111 2445899999999999
Q ss_pred HHHhcc----cchhhccccchHHHHHHHHHhhc--CCceEEEecccccccCCCCCccEEEEcCC--------------CC
Q 007044 379 LADLLP----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEP--------------PR 438 (620)
Q Consensus 379 l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~--g~~~vLvaTdv~~rGlDi~~v~~VI~~d~--------------P~ 438 (620)
++..|. .+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ ++++||++++ |.
T Consensus 336 la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~ 414 (677)
T 3rc3_A 336 VSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPI 414 (677)
T ss_dssp HHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBC
T ss_pred HHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccC
Confidence 999987 67899999999999999999999 899999999999999999 9999999999 88
Q ss_pred CHHHHHHHhcccccCCCc---cEEEEEeCCCchHHHHHHHHhCCCceeeC
Q 007044 439 DVEAYIHRSGRTGRAGNT---GVAVMLYDPRKSSVSKIERESGVKFEHIS 485 (620)
Q Consensus 439 s~~~yiqr~GRtgR~g~~---G~~i~l~~~~~~~~~~i~~~~~~~~~~~~ 485 (620)
+..+|+||+|||||.|.. |.|++++......+..+.......+....
T Consensus 415 s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~ 464 (677)
T 3rc3_A 415 TTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAG 464 (677)
T ss_dssp CHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEE
T ss_pred CHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhcc
Confidence 999999999999999964 77777765555566777666655565543
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.4e-36 Score=293.19 Aligned_cols=204 Identities=32% Similarity=0.497 Sum_probs=185.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (620)
..|+++++++.++++|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+... ..++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----------~~~~ 73 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE----------RAEV 73 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT----------SCSC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC----------cCCc
Confidence 469999999999999999999999999999999999999999999999999999999999988653 2356
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCC----CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAV----GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~----~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||++||++|+.|+++.+..++... ++.+..++||.+...+...+..+++|+|+||++|.+++.++.+.+.++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 153 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceE
Confidence 79999999999999999999988766 78899999999877766666678999999999999999988888999999
Q ss_pred EEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEE
Q 007044 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (620)
Q Consensus 265 lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~ 325 (620)
||+||||++++++|...+..++..++. .+|+++||||+|..+..+.+.++ .+|..+.+
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~~~~ 211 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPK--DLQMLVFSATIPEKLKPFLKKYM-ENPTFVHV 211 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCT--TCEEEEEESCCCGGGHHHHHHHC-SSCEEEEC
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHc-CCCeEEEe
Confidence 999999999999999999999999876 68999999999999999999999 56766654
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.1e-36 Score=295.05 Aligned_cols=206 Identities=32% Similarity=0.472 Sum_probs=176.3
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|+++++++.++++|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+... ..
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----------~~ 97 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----------FK 97 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------SC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----------CC
Confidence 34679999999999999999999999999999999999999999999999999999999999987643 23
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCC-CcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
++++||++||++|+.|+++.+..++...++.+..++||.....+...+..+ ++|+|+||++|.+++.++.+.+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 457999999999999999999999988889999999998887777666655 9999999999999999888889999999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEE
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~ 325 (620)
|+||||+|++++|...+..++..++. .+|+++||||+|+.+..+++.++ .++..|.+
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~l-~~p~~i~v 234 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNT--SIQVVLLSATMPTDVLEVTKKFM-RDPIRILV 234 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-SSCEEEC-
T ss_pred EECCchHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHC-CCCEEEEe
Confidence 99999999999999999999999876 68999999999999999999999 46666543
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.3e-36 Score=339.82 Aligned_cols=315 Identities=15% Similarity=0.166 Sum_probs=190.8
Q ss_pred CCCcHHHHHHHHHHHc----C-CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLD----G-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~----g-~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
..|+|+|.++++.++. | ++++++++||||||++++..+...+..+... ......+++|||+||++|+.|+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~----~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNR----TGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCS----SCSSSCCCEEEEEC---------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhccccc----ccccCCCeEEEEeCCHHHHHHHH
Confidence 3799999999999875 4 6699999999999999655444444332110 00124567999999999999999
Q ss_pred -HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhc----CCccCCCccEEEeccchhhhhcCcH
Q 007044 205 -EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER----GNIDLSSLKFRVLDEADEMLRMGFV 279 (620)
Q Consensus 205 -~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~----~~~~l~~l~~lVlDEah~~l~~~f~ 279 (620)
+.+..++ ..+..+.++. ...+.+|+|+||++|..++.. ..+....+++||+||||++...+ .
T Consensus 253 ~~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~ 319 (590)
T 3h1t_A 253 DKTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-N 319 (590)
T ss_dssp --CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-h
Confidence 7776554 3344444332 335689999999999887642 23456779999999999997543 3
Q ss_pred HHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhccc-----------------CCcEEEEecCccccc---------
Q 007044 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS-----------------DKKTIDLVGNEKMKA--------- 333 (620)
Q Consensus 280 ~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~--------- 333 (620)
..+..++..++. .++++||||+......-...++.. ++..+.+........
T Consensus 320 ~~~~~il~~~~~---~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 320 SNWREILEYFEP---AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp --CHHHHHHSTT---SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred HHHHHHHHhCCc---ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 456777777763 689999999764322222222211 111111110000000
Q ss_pred --ccceEEEEEeCCc-------hhhhh----hHHHHHHhcCCCCeEEEEEcccccHHHHHHhccc------------chh
Q 007044 334 --STNVRHIVLPCSS-------SARSQ----VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG------------ARA 388 (620)
Q Consensus 334 --~~~i~~~~~~~~~-------~~~~~----~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~------------~~~ 388 (620)
...+....+.... ..+.. .+..++.....++++||||+++..|+.++..|.. +..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0000000000000 00111 2333344445668999999999999999999862 456
Q ss_pred hccccchHHHHHHHHHhhcCCce---EEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCC--ccEEEEEe
Q 007044 389 LHGDIQQSQREVTLAGFRSGKFM---TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN--TGVAVMLY 463 (620)
Q Consensus 389 lh~~l~~~~R~~~~~~F~~g~~~---vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~--~G~~i~l~ 463 (620)
+||++++ +|..++++|++|+.+ |||||+++++|||+|+|++||++++|+++..|+||+||+||.|. .+..++++
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 8999864 799999999998866 89999999999999999999999999999999999999999875 23334444
Q ss_pred CC
Q 007044 464 DP 465 (620)
Q Consensus 464 ~~ 465 (620)
+-
T Consensus 556 D~ 557 (590)
T 3h1t_A 556 DY 557 (590)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.7e-36 Score=298.28 Aligned_cols=205 Identities=31% Similarity=0.457 Sum_probs=181.9
Q ss_pred CccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 109 NAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 109 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
..|.+++ +++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+...... ...
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------~~~ 125 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------PRN 125 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------GGG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc------ccC
Confidence 4577777 99999999999999999999999999999999999999999999999999999988764221 124
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC-CccCCCccEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFR 265 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-~~~l~~l~~l 265 (620)
++++||++|||+||.|+++.+..++...++.+..++||.....+...+..+++|+|+||+++.+++.+. .+.+.++++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 567999999999999999999999988899999999999988888888888999999999999998765 4678999999
Q ss_pred EeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCc
Q 007044 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321 (620)
Q Consensus 266 VlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~ 321 (620)
|+||||+|++++|...+..++..++. .+|+++||||+|+.+..+++.+++.++.
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~--~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPT--RRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCS--SSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCC--CCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 99999999999999999999999976 6899999999999999999999865443
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.5e-35 Score=290.91 Aligned_cols=204 Identities=32% Similarity=0.527 Sum_probs=182.1
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 186 (620)
....|+++++++.+.++|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+... ..
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----------~~ 91 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----------NL 91 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----------SC
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----------CC
Confidence 34679999999999999999999999999999999999999999999999999999999999988643 23
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
++++||++||++|+.|+++.+..++... ++++..++||.....+...+ .+++|+|+||++|.+++.++.+.+.++++|
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 4679999999999999999999988664 78999999999887766555 479999999999999999888889999999
Q ss_pred EeccchhhhhcC-cHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEE
Q 007044 266 VLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (620)
Q Consensus 266 VlDEah~~l~~~-f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~ 324 (620)
|+||||+++++| |...+..++..++. .+|+++||||+|..+..+...|+ .++..+.
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~l~lSAT~~~~~~~~~~~~~-~~p~~i~ 227 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPA--SKQMLAVSATYPEFLANALTKYM-RDPTFVR 227 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHTTTC-SSCEEEC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCC--CCeEEEEEeccCHHHHHHHHHHc-CCCeEEE
Confidence 999999999998 99999999999976 68999999999999999998888 4666554
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.5e-35 Score=282.52 Aligned_cols=203 Identities=45% Similarity=0.727 Sum_probs=184.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 007044 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (620)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (620)
+|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+..... ...+++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-------RGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------TTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------cCCCCc
Confidence 5899999999999999999999999999999999999999999999999999999999998875321 235678
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEecc
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDE 269 (620)
+||++||++|+.|+++.+..++.. +++..++||.....+...+..+++|+|+||+++.+++.++.+.+.++++||+||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999998754 788899999988888888888899999999999999998888899999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEE
Q 007044 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (620)
Q Consensus 270 ah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~ 324 (620)
||++++.+|...+..++..++. .+|+++||||+|+.+..+.+.++ .++..+.
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i~ 204 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATPP--SRQTLLFSATLPSWAKRLAERYM-KNPVLIN 204 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCT--TSEEEEECSSCCHHHHHHHHHHC-SSCEEEE
T ss_pred hhHhhccchHHHHHHHHHhCCc--cCeEEEEEEecCHHHHHHHHHHc-CCCeEEE
Confidence 9999999999999999998876 68999999999999999999998 4666654
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=289.25 Aligned_cols=208 Identities=32% Similarity=0.485 Sum_probs=183.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+...... ...+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------~~~~ 97 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------STDG 97 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------GGGC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------ccCC
Confidence 4569999999999999999999999999999999999999999999999999999999999988653211 1245
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcC-CccCCCccEEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRV 266 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~-~~~l~~l~~lV 266 (620)
+++||++||++|+.|+++.+..++...++.+..++||.....+...+ .+++|+|+||++|.+++.+. .+.+.++++||
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 67999999999999999999999988889999999998877666555 47999999999999998765 56788999999
Q ss_pred eccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEE
Q 007044 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (620)
Q Consensus 267 lDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~ 325 (620)
+||||++++++|...+..++..++. .+|+++||||+++.+..+++.++ .++..+.+
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPK--KRQTLLFSATQTKSVKDLARLSL-KNPEYVWV 232 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCT--TSEEEEEESSCCHHHHHHHHHSC-SSCEEEEC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCC--CCeEEEEEeeCCHHHHHHHHHhC-CCCEEEEe
Confidence 9999999999999999999999976 68999999999999999999998 56766654
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.1e-35 Score=343.33 Aligned_cols=359 Identities=16% Similarity=0.142 Sum_probs=244.4
Q ss_pred CCCcHHHHHHHHHHHc--CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~--g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~ 207 (620)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+..+. ..++|||||+ .|+.||..++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----------~~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----------AERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----------CCCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----------CCeEEEEeCH-HHHHHHHHHH
Confidence 5799999999998885 458999999999999999888877776543 2249999999 9999999999
Q ss_pred HHhhcCCCceEEEEeCCcchHHHHH---HhcCCCcEEEeChHHHHHHHhc-CCccCCCccEEEeccchhhhhcCcH-HHH
Q 007044 208 DVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFV-EDV 282 (620)
Q Consensus 208 ~~~~~~~~~~v~~~~gg~~~~~~~~---~l~~~~~IlV~Tp~rl~~~l~~-~~~~l~~l~~lVlDEah~~l~~~f~-~~l 282 (620)
...+ ++.+..+.|+.. ..... ......+|+|+|++.+...... ..+...++++||+||||++.+.+.. ...
T Consensus 220 ~~~f---~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6654 455555544332 22111 1123579999999988653221 1234557899999999999754421 111
Q ss_pred HHHHHhccccCCceEEeecCCCCh----HHHHHH----------------------------HHhcccCC----------
Q 007044 283 ELILGKVEDANKVQTLLFSATLPS----WVKHIS----------------------------TKFLKSDK---------- 320 (620)
Q Consensus 283 ~~il~~~~~~~~~q~ll~SATl~~----~~~~~~----------------------------~~~~~~~~---------- 320 (620)
...+..+.. ...+++++|||... .+..+. ..++....
T Consensus 296 ~~~l~~L~~-~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~ 374 (968)
T 3dmq_A 296 YQAIEQLAE-HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLG 374 (968)
T ss_dssp HHHHHHHHT-TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSST
T ss_pred HHHHHHHhh-cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 122222211 13579999999632 000000 00000000
Q ss_pred -----------------------------------------cEEEEecCc-ccccccceEEEEE----------------
Q 007044 321 -----------------------------------------KTIDLVGNE-KMKASTNVRHIVL---------------- 342 (620)
Q Consensus 321 -----------------------------------------~~i~~~~~~-~~~~~~~i~~~~~---------------- 342 (620)
..+...... ............+
T Consensus 375 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~ 454 (968)
T 3dmq_A 375 EMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIM 454 (968)
T ss_dssp TTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHT
T ss_pred HHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhh
Confidence 000000000 0000000011111
Q ss_pred -----------------------------eCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc-----cchh
Q 007044 343 -----------------------------PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARA 388 (620)
Q Consensus 343 -----------------------------~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~ 388 (620)
.+....|...+..++... .+.++||||+++..++.++..|. .+..
T Consensus 455 ~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 455 GARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp TCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 122334566777777764 67899999999999999999987 4678
Q ss_pred hccccchHHHHHHHHHhhcCC--ceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC
Q 007044 389 LHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 389 lh~~l~~~~R~~~~~~F~~g~--~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
+||+|++.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.+++++...
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~ 613 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYL 613 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecC
Confidence 999999999999999999998 999999999999999999999999999999999999999999999998665554333
Q ss_pred -chHHHHHHHHh--CCCceeeCCCCHHHHHHHHhHHHHHHhhh
Q 007044 467 -KSSVSKIERES--GVKFEHISAPQPADIAKAAGVEAAETITQ 506 (620)
Q Consensus 467 -~~~~~~i~~~~--~~~~~~~~~p~~~~i~~~~~~~~~~~~~~ 506 (620)
...-..|.+.. +..+.....|...++.+.....+.+.+..
T Consensus 614 ~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~~~~~~l~~~l~~ 656 (968)
T 3dmq_A 614 EKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLAS 656 (968)
T ss_dssp TTSHHHHHHHHHHHTTCCSSSCCSSHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhc
Confidence 23334455544 66677788899999988777666666654
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=6.1e-35 Score=285.33 Aligned_cols=205 Identities=30% Similarity=0.458 Sum_probs=177.5
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 187 (620)
...|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+... ..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~----------~~~ 82 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------VKA 82 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT----------CCS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc----------CCC
Confidence 4579999999999999999999999999999999999999999999999999999999999988653 245
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
+++||++||++|+.|+++.+..++...++.+..++||.....+...+.. ++|+|+||++|.+++.++.+.+.++++||+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 6799999999999999999999988889999999999887766655544 999999999999999988888999999999
Q ss_pred ccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEe
Q 007044 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (620)
Q Consensus 268 DEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~ 326 (620)
||||++++++|...+..++..++. .+|+++||||+|+.+..+.+.++ .++..+.+.
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~p~~i~~~ 217 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILVK 217 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEEESSCCHHHHHHHHHHC-SSCEEEC--
T ss_pred cChhHHhhhhhHHHHHHHHHhCCc--cCeEEEEEeecCHHHHHHHHHHC-CCCEEEEec
Confidence 999999999999999999999876 68999999999999999999999 566666543
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5.9e-35 Score=316.09 Aligned_cols=316 Identities=21% Similarity=0.219 Sum_probs=234.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
.|+ .|+++|....-.+..|+ |+...||+|||+++.+|++-....+. .+.|++||+.||.|-+++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~-------------~vhVvT~ndyLA~rdae~ 135 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK-------------GVHLVTVNDYLARRDALW 135 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS-------------CEEEEESSHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC-------------ceEEEeccHHHHHhHHHH
Confidence 465 79999999999999888 99999999999999999985555443 299999999999999999
Q ss_pred HHHhhcCCCceEEEEeCC--------------------------------------------------cchHHHHHHhcC
Q 007044 207 FDVYGGAVGLTSCCLYGG--------------------------------------------------APYHAQEFKLKK 236 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg--------------------------------------------------~~~~~~~~~l~~ 236 (620)
+..+..++|++|++++.. .+... +.-..
T Consensus 136 m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY 213 (822)
T 3jux_A 136 MGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAY 213 (822)
T ss_dssp HHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHh
Confidence 999999999999999982 11111 11122
Q ss_pred CCcEEEeChHHH-HHHHhcC------CccCCCccEEEeccchhhhhc---------C-------cHHHHHHHHHhcccc-
Q 007044 237 GIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLRM---------G-------FVEDVELILGKVEDA- 292 (620)
Q Consensus 237 ~~~IlV~Tp~rl-~~~l~~~------~~~l~~l~~lVlDEah~~l~~---------~-------f~~~l~~il~~~~~~- 292 (620)
.+||+.||..-+ .|+|... ....+.+.+.|+||+|.+|=. | ++..+..+...+...
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 489999998876 4555432 233567899999999997610 0 111122221111100
Q ss_pred -------------------------------------------------------C------------------------
Q 007044 293 -------------------------------------------------------N------------------------ 293 (620)
Q Consensus 293 -------------------------------------------------------~------------------------ 293 (620)
.
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 0
Q ss_pred -----------------------------------CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceE
Q 007044 294 -----------------------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (620)
Q Consensus 294 -----------------------------------~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 338 (620)
-.++.+||+|+......+.+.|. ...+.+. .. .+...+.
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~---l~vv~IP-tn--kp~~R~d 447 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG---MEVVVIP-TH--KPMIRKD 447 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC---CCEEECC-CS--SCCCCEE
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC---CeEEEEC-CC--CCcceee
Confidence 14788999999888777776663 2333332 22 1122222
Q ss_pred E-EEEeCCchhhhhhHHHHHHh-cCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceE
Q 007044 339 H-IVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (620)
Q Consensus 339 ~-~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~v 412 (620)
+ ..+......+...+...+.. ...+.++||||+|+..++.|+..|. .+.++||+..+.+|..+...|+.| .|
T Consensus 448 ~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 448 HDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred cCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 2 23445566677777766654 3457899999999999999999997 567899997777777777777777 69
Q ss_pred EEecccccccCCCC--------CccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCCch
Q 007044 413 LVATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468 (620)
Q Consensus 413 LvaTdv~~rGlDi~--------~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~~~ 468 (620)
+||||+|+||+||+ ++.+||||++|.+...|+||+|||||+|.+|.+++|++....
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999999999998 677999999999999999999999999999999999998843
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-34 Score=282.53 Aligned_cols=207 Identities=30% Similarity=0.457 Sum_probs=181.6
Q ss_pred CCCCCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCC
Q 007044 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (620)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 183 (620)
.+.+...|+++++++.++++|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------- 79 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------- 79 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---------
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc---------
Confidence 34455679999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEEeCCcchHHHHHHhcC-CCcEEEeChHHHHHHHhcCCccCCC
Q 007044 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKK-GIDVVIGTPGRIKDHIERGNIDLSS 261 (620)
Q Consensus 184 ~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~l~~~~~~l~~ 261 (620)
..++++||++||++|+.|+++.+..+.... ++++..++|+.+...+...+.. .++|+|+||+++.+++.++.+.+.+
T Consensus 80 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 80 -TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp -TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred -CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 234579999999999999999999998765 7999999999988777766654 5799999999999999988888999
Q ss_pred ccEEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEE
Q 007044 262 LKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (620)
Q Consensus 262 l~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i 323 (620)
++++|+||||++++ .+|...+..++..++. ++|+++||||+|..+..+++.++ .++..|
T Consensus 159 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i 218 (220)
T 1t6n_A 159 IKHFILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEI 218 (220)
T ss_dssp CCEEEEESHHHHHSSHHHHHHHHHHHHTSCS--SSEEEEEESCCCTTTHHHHHTTC-SSCEEE
T ss_pred CCEEEEcCHHHHhcccCcHHHHHHHHHhCCC--cCeEEEEEeecCHHHHHHHHHHc-CCCeEE
Confidence 99999999999987 5888999999988876 68999999999999999999998 456554
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=283.94 Aligned_cols=208 Identities=28% Similarity=0.427 Sum_probs=178.1
Q ss_pred CCccccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCC
Q 007044 108 PNAVSRF----RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (620)
Q Consensus 108 ~~~~~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 183 (620)
...|+++ ++++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+....
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------- 95 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-------- 95 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC--------
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc--------
Confidence 3456665 8999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHH-HHhcCCCcEEEeChHHHHHHHhcC--CccCC
Q 007044 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE-FKLKKGIDVVIGTPGRIKDHIERG--NIDLS 260 (620)
Q Consensus 184 ~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~-~~l~~~~~IlV~Tp~rl~~~l~~~--~~~l~ 260 (620)
..++++||++||++|+.|+++.+..++...++.+..++|+....... .....+++|+|+||++|.+++.++ .+.+.
T Consensus 96 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 96 -NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp -SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred -cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 24567999999999999999999999988889888888765433322 223457899999999999999876 57789
Q ss_pred CccEEEeccchhhhh---cCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhcccCCcEEEEe
Q 007044 261 SLKFRVLDEADEMLR---MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (620)
Q Consensus 261 ~l~~lVlDEah~~l~---~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~ 326 (620)
++++||+||||+|++ .+|...+..++..+... +.|+++||||+|..+..+.+.++ .++..+.+.
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~SAT~~~~v~~~~~~~l-~~p~~i~~~ 241 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH-KVRRAMFSATFAYDVEQWCKLNL-DNVISVSIG 241 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT-TCEEEEEESSCCHHHHHHHHHHS-SSCEEEEEC
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCC-CcEEEEEeccCCHHHHHHHHHhC-CCCEEEEeC
Confidence 999999999999998 57899999998776542 57999999999999999999999 577777654
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.7e-32 Score=299.10 Aligned_cols=308 Identities=14% Similarity=0.182 Sum_probs=210.2
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..|+|+|.++++.+. .++++|++++||+|||++++..+......+ ...++|||||+ .|+.||.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-----------~~~~~LIv~P~-~l~~qw~~ 103 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-----------ELTPSLVICPL-SVLKNWEE 103 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-----------CCSSEEEEECS-TTHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-----------CCCCEEEEccH-HHHHHHHH
Confidence 479999999998873 578999999999999999765554443332 22359999995 68999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHH
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~i 285 (620)
++.+++. ++++..++|+... .....++|+|+||+++..... +....+++||+||||++.+.+. .....
T Consensus 104 e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~ 171 (500)
T 1z63_A 104 ELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKA 171 (500)
T ss_dssp HHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHH
T ss_pred HHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHH
Confidence 9999874 4566666665521 123458999999999976543 3345689999999999976542 23344
Q ss_pred HHhccccCCceEEeecCCCCh-HHHHHH------------------------------------HHhcccCCcEEEEecC
Q 007044 286 LGKVEDANKVQTLLFSATLPS-WVKHIS------------------------------------TKFLKSDKKTIDLVGN 328 (620)
Q Consensus 286 l~~~~~~~~~q~ll~SATl~~-~~~~~~------------------------------------~~~~~~~~~~i~~~~~ 328 (620)
+..++ ..+.+++|||... ...++. ..++ .+..+.....
T Consensus 172 l~~l~---~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l--~~~~lrr~k~ 246 (500)
T 1z63_A 172 VKELK---SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII--SPFILRRTKY 246 (500)
T ss_dssp HHTSC---EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH--TTTEECCCTT
T ss_pred HHhhc---cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH--hhHeeeeccc
Confidence 44453 3578999999633 111111 1111 1111111100
Q ss_pred c---ccccccceEE-EEEeCC-------------------------------------------------------chhh
Q 007044 329 E---KMKASTNVRH-IVLPCS-------------------------------------------------------SSAR 349 (620)
Q Consensus 329 ~---~~~~~~~i~~-~~~~~~-------------------------------------------------------~~~~ 349 (620)
+ ....+..... .++... .+.|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0 0001111111 111111 1123
Q ss_pred hhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcC-Cce-EEEecccccc
Q 007044 350 SQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVATNVAAR 421 (620)
Q Consensus 350 ~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g-~~~-vLvaTdv~~r 421 (620)
...+..++... ..+.++||||++...++.+...|. .+..+||++++.+|..+++.|++| ..+ +|+||+++++
T Consensus 327 ~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 327 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 33334444432 467899999999999999998885 466799999999999999999998 555 7999999999
Q ss_pred cCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--EEEeCCC
Q 007044 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (620)
Q Consensus 422 GlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~ 466 (620)
|+|++++++||+||+|+++..|+||+||++|.|+.+.+ +.|+...
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999999999986654 5566655
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=5.8e-32 Score=313.39 Aligned_cols=321 Identities=13% Similarity=0.104 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHHc--------------CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcc
Q 007044 130 ESLFPIQAMTFDMVLD--------------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~--------------g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~P 195 (620)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+... ....++|||+|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----------~~~~rvLvlvp 338 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----------DFIDKVFFVVD 338 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----------TTCCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----------CCCceEEEEeC
Confidence 4699999999999875 378999999999999997 6777655432 12357999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeChHHHHHHHhcCC--ccCCCccEEEeccchh
Q 007044 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADE 272 (620)
Q Consensus 196 treLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~l~~~~--~~l~~l~~lVlDEah~ 272 (620)
|++|+.|+.+.|..++.. .+.++.+.......+. .+++|+|+||++|.+++.... ..+....+||+||||+
T Consensus 339 r~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr 412 (1038)
T 2w00_A 339 RKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR 412 (1038)
T ss_dssp GGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT
T ss_pred cHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccch
Confidence 999999999999887643 2345555555555563 579999999999999887542 2456789999999999
Q ss_pred hhhcCcHHHHHHHHHhccccCCceEEeecCCCChHHH-----HHHHHhcc---------------cCCcEEEEecCcccc
Q 007044 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVK-----HISTKFLK---------------SDKKTIDLVGNEKMK 332 (620)
Q Consensus 273 ~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~-----~~~~~~~~---------------~~~~~i~~~~~~~~~ 332 (620)
+... .....|+..++. .++++||||+..... .....|-. ..+..+.........
T Consensus 413 s~~~---~~~~~I~~~~p~---a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~ 486 (1038)
T 2w00_A 413 SQFG---EAQKNLKKKFKR---YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQF 486 (1038)
T ss_dssp THHH---HHHHHHHHHCSS---EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGG
T ss_pred hcch---HHHHHHHHhCCc---ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchh
Confidence 8643 345667777763 799999999764221 11111110 001111111000000
Q ss_pred ----------cccceEEEEEeCCchhhhhhHHHHHHhc----------CCCCeEEEEEcccccHHHHHHhccc-------
Q 007044 333 ----------ASTNVRHIVLPCSSSARSQVIPDIIRCY----------SSGGRTIIFTETKESASQLADLLPG------- 385 (620)
Q Consensus 333 ----------~~~~i~~~~~~~~~~~~~~~l~~ll~~~----------~~~~~~iVF~~t~~~~~~l~~~l~~------- 385 (620)
....+.+............++..++..+ ..+.++||||+|+..|..++..|..
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~ 566 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAAN 566 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcc
Confidence 0000000000001111112233344422 1346899999999999999887752
Q ss_pred ----------chhhccc----------c----------ch-----------------------------HHHHHHHHHhh
Q 007044 386 ----------ARALHGD----------I----------QQ-----------------------------SQREVTLAGFR 406 (620)
Q Consensus 386 ----------~~~lh~~----------l----------~~-----------------------------~~R~~~~~~F~ 406 (620)
+.++||+ + ++ ..|..++++|+
T Consensus 567 ~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk 646 (1038)
T 2w00_A 567 KSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK 646 (1038)
T ss_dssp TSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 1345542 2 22 24888999999
Q ss_pred cCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCc----cEEEEEeCCCchHHHHHH
Q 007044 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT----GVAVMLYDPRKSSVSKIE 474 (620)
Q Consensus 407 ~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~----G~~i~l~~~~~~~~~~i~ 474 (620)
+|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+||+||++|.+.. |.++.|++........+.
T Consensus 647 ~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~ 717 (1038)
T 2w00_A 647 NQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAIT 717 (1038)
T ss_dssp TTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHH
T ss_pred cCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHH
Confidence 9999999999999999999999 789999999999999999999999764 778887765433333333
No 73
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=4.7e-31 Score=254.98 Aligned_cols=202 Identities=36% Similarity=0.588 Sum_probs=178.6
Q ss_pred ceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCce
Q 007044 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (620)
Q Consensus 336 ~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~ 411 (620)
.+.+.++.+....|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3556778888899999999999876 56899999999999999999986 577899999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCCCHH
Q 007044 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPA 490 (620)
Q Consensus 412 vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p~~~ 490 (620)
|||||+++++|||+|++++||+||+|+++..|+||+|||||.|+.|.|++|+++. ...+..+++..+..+..+..|...
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhhhcCCCchHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 007044 491 DIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541 (620)
Q Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 541 (620)
++...........+..+.......|...++++++.. ++.+ ++++|+.+
T Consensus 164 ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~--~~~~-l~~al~~l 211 (212)
T 3eaq_A 164 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEG--RVEV-VAALLALL 211 (212)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHT--CHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcC--CHHH-HHHHHHhh
Confidence 999888888888887765444477999999999885 6665 45555443
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.5e-29 Score=278.79 Aligned_cols=131 Identities=23% Similarity=0.285 Sum_probs=115.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
-.|+ .|||+|..++|.+++|+ |++++||||||++|++|++.....+. +++|++||++||.|+++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~-------------qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK-------------GVHVVTVNDYLARRDAE 138 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS-------------CCEEEESSHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC-------------CEEEEeCCHHHHHHHHH
Confidence 3699 99999999999999998 99999999999999999975554332 39999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHH-HHHHhcCC------ccCC---CccEEEeccchhhh
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLS---SLKFRVLDEADEML 274 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~l~~~~------~~l~---~l~~lVlDEah~~l 274 (620)
++..++.++|+++++++||.+.. .+....++||+||||++| +|+|..+. +.++ ++.++|+||||+||
T Consensus 139 ~m~~l~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 139 WMGPVYRGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHHTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHHhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999999999998843 344445799999999999 89987653 5677 89999999999998
No 75
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=9.5e-29 Score=277.65 Aligned_cols=321 Identities=14% Similarity=0.197 Sum_probs=217.4
Q ss_pred CCcHHHHHHHHHHH---------cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 131 SLFPIQAMTFDMVL---------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 131 ~~~~~Q~~~i~~il---------~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
.|+|+|.+++..+. .+...|++.+||+|||++++..+...+....... ....++|||||+ .|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~------p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCK------PEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSS------CSCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcccc------CCCCcEEEEecH-HHHH
Confidence 68999999999874 4567999999999999998877776665543210 122358999997 8999
Q ss_pred HHHHHHHHhhcCCCceEEEEeCCcchHHH--HHHh-c-----CCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQ--EFKL-K-----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 202 Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~--~~~l-~-----~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
||.+++.++... .+.+..++||...... .... . ...+|+|+|++.+..... .+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceec
Confidence 999999998754 4667777777543221 1111 1 147899999999976542 344456789999999998
Q ss_pred hhcCcHHHHHHHHHhccccCCceEEeecCCCChH----H---------------HHHHHHhccc----------------
Q 007044 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSW----V---------------KHISTKFLKS---------------- 318 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~----~---------------~~~~~~~~~~---------------- 318 (620)
.+.. ......+..+. ....+++|||.-.. + ..+.+.|...
T Consensus 205 kn~~--~~~~~al~~l~---~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN---AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp CTTC--HHHHHHHHHHC---CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred CChh--hHHHHHHHhcc---cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 6544 22233333443 35789999995221 0 0011111000
Q ss_pred ------------CCcEEEEecCcc-cccccceEEEEE-eC----------------------------------------
Q 007044 319 ------------DKKTIDLVGNEK-MKASTNVRHIVL-PC---------------------------------------- 344 (620)
Q Consensus 319 ------------~~~~i~~~~~~~-~~~~~~i~~~~~-~~---------------------------------------- 344 (620)
.+..+.-..... ...+....+... ..
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 000000000000 000001111100 00
Q ss_pred ------------------------------------CchhhhhhHHHHHHhc--CCCCeEEEEEcccccHHHHHHhcc--
Q 007044 345 ------------------------------------SSSARSQVIPDIIRCY--SSGGRTIIFTETKESASQLADLLP-- 384 (620)
Q Consensus 345 ------------------------------------~~~~~~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~-- 384 (620)
..+.|...+..++... ..+.++||||++...++.+...|.
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~ 439 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 439 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC
Confidence 0122333455555443 246899999999999999999886
Q ss_pred --cchhhccccchHHHHHHHHHhhcCCc---eEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCcc--
Q 007044 385 --GARALHGDIQQSQREVTLAGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-- 457 (620)
Q Consensus 385 --~~~~lh~~l~~~~R~~~~~~F~~g~~---~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G-- 457 (620)
.+..+||++++.+|..++++|++|.. .+|++|+++++|||++++++||+||+|+++..|.|++||++|.|+..
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCce
Confidence 56689999999999999999999865 48999999999999999999999999999999999999999999865
Q ss_pred EEEEEeCCC
Q 007044 458 VAVMLYDPR 466 (620)
Q Consensus 458 ~~i~l~~~~ 466 (620)
.++.|+...
T Consensus 520 ~v~~lv~~~ 528 (644)
T 1z3i_X 520 YIYRLLSTG 528 (644)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
Confidence 446666666
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-29 Score=289.01 Aligned_cols=328 Identities=15% Similarity=0.223 Sum_probs=223.4
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il----~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
..|+|+|.+++..++ .+++.|++.+||+|||++++..+...+.... ....+||||| ..|+.||.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~----------~~~~~LIV~P-~sll~qW~~ 303 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR----------QNGPHIIVVP-LSTMPAWLD 303 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS----------CCSCEEEECC-TTTHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC----------CCCCEEEEEC-chHHHHHHH
Confidence 378999999998776 7899999999999999987666654433221 1123899999 688999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHHHHHHh------------cCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKL------------KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~~~~~l------------~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
+|.+++. ++++.+++|+.......... ...++|+|+|++.+...... +....+++||+||||++
T Consensus 304 E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 304 TFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 9999874 47777777776554433321 23578999999999765432 22335789999999999
Q ss_pred hhcCcHHHHHHHHHhccccCCceEEeecCCCCh----HHHHHHHHhcc----------------------------cCCc
Q 007044 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPS----WVKHISTKFLK----------------------------SDKK 321 (620)
Q Consensus 274 l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~----~~~~~~~~~~~----------------------------~~~~ 321 (620)
.+.. ......+..++ ....+++|||.-. .+..+...... -.+.
T Consensus 380 kn~~--s~~~~~l~~l~---~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~ 454 (800)
T 3mwy_W 380 KNAE--SSLYESLNSFK---VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF 454 (800)
T ss_dssp CCSS--SHHHHHHTTSE---EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGG
T ss_pred cCch--hHHHHHHHHhh---hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHH
Confidence 6543 23444455554 3577999999521 11111111100 0011
Q ss_pred EEEEecCcccc-cccc-eEEEEEeCC------------------------------------------------------
Q 007044 322 TIDLVGNEKMK-ASTN-VRHIVLPCS------------------------------------------------------ 345 (620)
Q Consensus 322 ~i~~~~~~~~~-~~~~-i~~~~~~~~------------------------------------------------------ 345 (620)
.+......... .+.. ...+.+...
T Consensus 455 ~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~ 534 (800)
T 3mwy_W 455 ILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVL 534 (800)
T ss_dssp EEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHC
T ss_pred HhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHH
Confidence 11100000000 0000 001111000
Q ss_pred -------------------chhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHH
Q 007044 346 -------------------SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401 (620)
Q Consensus 346 -------------------~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~ 401 (620)
.+.|...|..++... ..+.++||||+....++.|...|. .+..+||.+++.+|..+
T Consensus 535 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~ 614 (800)
T 3mwy_W 535 QKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRIS 614 (800)
T ss_dssp CCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHH
T ss_pred HhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 123444555566544 356799999999999999999987 57789999999999999
Q ss_pred HHHhhcCCc---eEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCcc--EEEEEeCCC--c-hHHHHH
Q 007044 402 LAGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR--K-SSVSKI 473 (620)
Q Consensus 402 ~~~F~~g~~---~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G--~~i~l~~~~--~-~~~~~i 473 (620)
++.|+++.. .+|++|.+++.|||++.+++||+||+|+++..++||+||++|.|+.. .++.|+... + ..+...
T Consensus 615 i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~ 694 (800)
T 3mwy_W 615 IDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 694 (800)
T ss_dssp HHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred HHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 999998654 59999999999999999999999999999999999999999999854 446677766 3 334444
Q ss_pred HHHh
Q 007044 474 ERES 477 (620)
Q Consensus 474 ~~~~ 477 (620)
.++.
T Consensus 695 ~~K~ 698 (800)
T 3mwy_W 695 RKKM 698 (800)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=8.6e-29 Score=277.75 Aligned_cols=170 Identities=22% Similarity=0.268 Sum_probs=127.3
Q ss_pred CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEccc
Q 007044 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (620)
Q Consensus 294 ~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~ 373 (620)
..|+++||||++...... . ...+.......... ...+.+.........++..+......+.++||||+|+
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~---~~~~~~~~r~~~l~---~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----S---GRVVEQIIRPTGLL---DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----C---SEEEEECSCTTCCC---CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCCEEEEecCCCHHHHHh----h---hCeeeeeeccCCCC---CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 468999999998754221 0 11222211110000 1112222223333444455555545678999999999
Q ss_pred ccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCC-----CCCHHHHH
Q 007044 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (620)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~-----P~s~~~yi 444 (620)
..++.++..|. .+..+||++++.+|..+++.|+.|.++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 99999999997 4677899999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccccCCCccEEEEEeCCC-chHHHHHH
Q 007044 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (620)
Q Consensus 445 qr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~ 474 (620)
||+|||||.| .|.|++|+++. ....+.++
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 9999999995 89999999987 44444443
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=6e-28 Score=270.78 Aligned_cols=167 Identities=23% Similarity=0.276 Sum_probs=126.6
Q ss_pred CceEEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEccc
Q 007044 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (620)
Q Consensus 294 ~~q~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~ 373 (620)
..|+++||||++....... . ..+............ .+.+.........++..+......+.++||||+|+
T Consensus 386 ~~q~i~~SAT~~~~~~~~~-----~--~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT-----D--EMVEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC-----S--SCEEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEecCCChhHHHhh-----h--CeeeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 5789999999987542220 1 111111111000011 12222233334445555555555678999999999
Q ss_pred ccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCC-----CCCHHHHH
Q 007044 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (620)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~-----P~s~~~yi 444 (620)
..++.++..|. .+..+||++++.+|..+++.|+.|.++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 99999999997 4677999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccccCCCccEEEEEeCCC-chHHH
Q 007044 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVS 471 (620)
Q Consensus 445 qr~GRtgR~g~~G~~i~l~~~~-~~~~~ 471 (620)
||+|||||. ..|.|++|+++. .....
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHH
Confidence 999999999 799999999987 44333
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.5e-27 Score=220.71 Aligned_cols=153 Identities=35% Similarity=0.580 Sum_probs=142.2
Q ss_pred ccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhc
Q 007044 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (620)
Q Consensus 332 ~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~ 407 (620)
....++.|.++.+....|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567999999999999999999999876 56799999999999999999986 57789999999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeC
Q 007044 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (620)
Q Consensus 408 g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~ 485 (620)
|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+.+. ...+..+++.++.++++..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 99999999999999999999999999999999999999999999999999999999998 7889999999999887654
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=224.07 Aligned_cols=159 Identities=30% Similarity=0.513 Sum_probs=141.6
Q ss_pred cccceEEEEEeCCchh-hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhc
Q 007044 333 ASTNVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (620)
Q Consensus 333 ~~~~i~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~ 407 (620)
+..++.|.++.+.... |...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568999999998766 899999998876 56899999999999999999997 57789999999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEEcCCC------CCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCC
Q 007044 408 GKFMTLVATNVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVK 480 (620)
Q Consensus 408 g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P------~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~ 480 (620)
|.++|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.|++|+.+. ...+..+++.++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999998 78899999999999
Q ss_pred ceeeCCCCHHHH
Q 007044 481 FEHISAPQPADI 492 (620)
Q Consensus 481 ~~~~~~p~~~~i 492 (620)
++++..+..+++
T Consensus 163 ~~~~~~~~~~~~ 174 (175)
T 2rb4_A 163 IKQLNAEDMDEI 174 (175)
T ss_dssp CEEECSSCCC--
T ss_pred ccccCCchhccc
Confidence 999988765543
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=2.6e-27 Score=220.95 Aligned_cols=152 Identities=23% Similarity=0.409 Sum_probs=140.1
Q ss_pred ccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCC
Q 007044 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409 (620)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~ 409 (620)
..++.|.++.+....|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 457889999999999999999999876 56799999999999999999996 5778999999999999999999999
Q ss_pred ceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC--chHHHHHHHHhCCCceeeCC
Q 007044 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISA 486 (620)
Q Consensus 410 ~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~--~~~~~~i~~~~~~~~~~~~~ 486 (620)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. ...+..+++.++..+++++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999986 57789999999999887653
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=8.4e-27 Score=216.14 Aligned_cols=151 Identities=26% Similarity=0.504 Sum_probs=134.7
Q ss_pred ceEEEEEeCCchh-hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCc
Q 007044 336 NVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (620)
Q Consensus 336 ~i~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~ 410 (620)
++.|.++.+.... |...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5788888888777 999999999876 56899999999999999999987 47789999999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCCC
Q 007044 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (620)
Q Consensus 411 ~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~p 487 (620)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. ...+..+++.++..+++++.+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999988 788999999999998887654
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=218.27 Aligned_cols=149 Identities=38% Similarity=0.569 Sum_probs=122.8
Q ss_pred ccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhc
Q 007044 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (620)
Q Consensus 332 ~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~ 407 (620)
.+..++.|.++.+....|...|..++.....++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999999999987667899999999999999999986 57789999999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCC
Q 007044 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVK 480 (620)
Q Consensus 408 g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~ 480 (620)
|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. ...+..+++.++..
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999988 77788887766443
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=218.91 Aligned_cols=160 Identities=29% Similarity=0.418 Sum_probs=126.2
Q ss_pred HHhcccCCcEEEEecCcccccccceEEEEEeCCchhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchh
Q 007044 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARA 388 (620)
Q Consensus 313 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~ 388 (620)
..|+ .+|..|.+... .....++.|.++.+....|...|..++... ++++||||+++..++.++..|. .+..
T Consensus 9 ~~~~-~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVD-LGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccc-CCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4566 46666665433 356678999999999999999998888764 4689999999999999999996 5778
Q ss_pred hccccchHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC--
Q 007044 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-- 466 (620)
Q Consensus 389 lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-- 466 (620)
+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chHHHHHHHHh
Q 007044 467 KSSVSKIERES 477 (620)
Q Consensus 467 ~~~~~~i~~~~ 477 (620)
...+..+++.+
T Consensus 164 ~~~~~~l~~~l 174 (191)
T 2p6n_A 164 ESVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45566666654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=8.8e-27 Score=217.09 Aligned_cols=150 Identities=27% Similarity=0.475 Sum_probs=135.9
Q ss_pred ceEEEEEeCCc-hhhhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCc
Q 007044 336 NVRHIVLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (620)
Q Consensus 336 ~i~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~ 410 (620)
++.|.++.+.. ..+...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 56777777777 78888888888765 56799999999999999999997 57789999999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEEEEEeCCC-chHHHHHHHHhCCCceeeCC
Q 007044 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (620)
Q Consensus 411 ~vLvaTdv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~i~l~~~~-~~~~~~i~~~~~~~~~~~~~ 486 (620)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. ...+..+++.++..+++..+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999988 77888898888877765544
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=6.9e-25 Score=212.25 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=124.5
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHH-HH
Q 007044 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ-VH 204 (620)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q-v~ 204 (620)
..+...|+|+|.++++.++.++++++++|||+|||++|+++++..+..... ...+.++||++||++|+.| +.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-------~~~~~~~lil~p~~~L~~q~~~ 100 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFR 100 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-------TTCCCCEEEEESSHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-------ccCCCcEEEEECHHHHHHHHHH
Confidence 345668999999999999999999999999999999999999987754311 0134569999999999999 77
Q ss_pred HHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCC------ccCCCccEEEeccchhhhhcCc
Q 007044 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN------IDLSSLKFRVLDEADEMLRMGF 278 (620)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~------~~l~~l~~lVlDEah~~l~~~f 278 (620)
+.+..+... ++++..++|+.........+..+++|+|+||++|.+++.+.. +.+.++++||+||||++.+.++
T Consensus 101 ~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~ 179 (216)
T 3b6e_A 101 KEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 179 (216)
T ss_dssp HTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------C
T ss_pred HHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCc
Confidence 888888754 688888888876655444455579999999999999987643 5678899999999999988777
Q ss_pred HHHHHH-HHHhc-c----------ccCCceEEeecCC
Q 007044 279 VEDVEL-ILGKV-E----------DANKVQTLLFSAT 303 (620)
Q Consensus 279 ~~~l~~-il~~~-~----------~~~~~q~ll~SAT 303 (620)
+..+.. ++... + ..+.+++++||||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 180 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 666533 22211 1 1135799999998
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=207.21 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=135.2
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEccc
Q 007044 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (620)
Q Consensus 117 ~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (620)
++.+.+.+...+...++++|.++++.+..|++++++|+||||||++|.+++++.+..... ...+++++++||
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p~ 118 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQPR 118 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEESS
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEeccc
Confidence 445555555556667899999999999999999999999999999999999887664321 234579999999
Q ss_pred HHHHHHHHHHHHHhhc-CCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh-h
Q 007044 197 RELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM-L 274 (620)
Q Consensus 197 reLa~Qv~~~~~~~~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~-l 274 (620)
|+|+.|+++.+..... ..+..++.-..... .....+++|+|||||+|++++.+ .++++++||+||||++ +
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc
Confidence 9999999988865433 33444443222111 11124588999999999999986 4889999999999997 7
Q ss_pred hcCcH-HHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 275 RMGFV-EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 275 ~~~f~-~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
+++|. ..+..++...+ +.|+++||||++... ...|+
T Consensus 191 ~~~~~~~~l~~i~~~~~---~~~~il~SAT~~~~~---~~~~~ 227 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAYP---EVRIVLMSATIDTSM---FCEYF 227 (235)
T ss_dssp HHHHHHHHHHHHHHHCT---TSEEEEEECSSCCHH---HHHHT
T ss_pred chHHHHHHHHHHHhhCC---CCeEEEEecCCCHHH---HHHHc
Confidence 88877 46677776654 589999999999865 44454
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=3.3e-23 Score=227.82 Aligned_cols=301 Identities=18% Similarity=0.182 Sum_probs=170.6
Q ss_pred CCCCCCcHHHHHHHHH----HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHH
Q 007044 127 KGIESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (620)
Q Consensus 127 ~g~~~~~~~Q~~~i~~----il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Q 202 (620)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------~~~~~~~~~t~~l~~q 66 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------KKKVLIFTRTHSQLDS 66 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------TCEEEEEESCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------CCcEEEEcCCHHHHHH
Confidence 477 899999998654 5689999999999999999999998753 2359999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEeCCcch--------HH---------------------------------------HHHHhc
Q 007044 203 VHEDFDVYGGAVGLTSCCLYGGAPY--------HA---------------------------------------QEFKLK 235 (620)
Q Consensus 203 v~~~~~~~~~~~~~~v~~~~gg~~~--------~~---------------------------------------~~~~l~ 235 (620)
+.+++..+ ++++..+.|.... .. ..+...
T Consensus 67 ~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 67 IYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHHGGG----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99888764 3444444432210 00 001123
Q ss_pred CCCcEEEeChHHHHHHHhcCCc-------cCCCccEEEeccchhhhhcC-------cHHH--------------------
Q 007044 236 KGIDVVIGTPGRIKDHIERGNI-------DLSSLKFRVLDEADEMLRMG-------FVED-------------------- 281 (620)
Q Consensus 236 ~~~~IlV~Tp~rl~~~l~~~~~-------~l~~l~~lVlDEah~~l~~~-------f~~~-------------------- 281 (620)
.+++|||+|+..|++...++.+ .+....++||||||+|.+.. -..+
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~ 222 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAK 222 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHH
Confidence 4589999999999987654322 24567899999999984310 0000
Q ss_pred --------------------------------------HHHHHHh-----------------------------------
Q 007044 282 --------------------------------------VELILGK----------------------------------- 288 (620)
Q Consensus 282 --------------------------------------l~~il~~----------------------------------- 288 (620)
+..++..
T Consensus 223 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 302 (540)
T 2vl7_A 223 KVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLV 302 (540)
T ss_dssp HHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 0000000
Q ss_pred ccccC-------Cce----EEeecCCCChHHHHHHHHhcccCCcEEEEecCcccccccceEEEEEe----CCchh-----
Q 007044 289 VEDAN-------KVQ----TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP----CSSSA----- 348 (620)
Q Consensus 289 ~~~~~-------~~q----~ll~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~----~~~~~----- 348 (620)
+.+.. ... +|++||||++.. .+...|. ..+. . .. ...+.+.. .+...
T Consensus 303 ~~P~~~~~~l~~~~~~~~~~IltSATL~p~~-~~~~~f~------~~~~-~--~~---g~~~~~~~~~l~s~f~~r~~~~ 369 (540)
T 2vl7_A 303 KVPSDVNQLIEDALNVKTFKVLMSGTLPESL-TLTNSYK------IVVN-E--SY---GRGEYYYCPNVTSELRKRNSNI 369 (540)
T ss_dssp EECSCHHHHHHHHTCCSSCEEEEESSCCTTC-CCTTEEE------EECC-C--C----CCCEEEECTTCCCCGGGHHHHH
T ss_pred EehHHHHHHHHHhcCccCCeEEEcccCCCCc-ccchhcC------Cchh-h--ee---cCCcceeccccCCCcccccCHH
Confidence 00000 011 377777776510 0000010 0000 0 00 01111111 11111
Q ss_pred --hhhhHHHHHHhcCCCCeEEEEEcccccHHHHHHhcccch-hhccccchHHHHHHHHHhhcCCceEEE--ecccccccC
Q 007044 349 --RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-ALHGDIQQSQREVTLAGFRSGKFMTLV--ATNVAARGL 423 (620)
Q Consensus 349 --~~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~-~lh~~l~~~~R~~~~~~F~~g~~~vLv--aTdv~~rGl 423 (620)
....+..++.. .++++|||++|....+.++..+.... ..+|.. ..|..+++.|+.+. .||+ ||+.+++||
T Consensus 370 ~~~~~~l~~~~~~--~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGi 444 (540)
T 2vl7_A 370 PIYSILLKRIYEN--SSKSVLVFFPSYEMLESVRIHLSGIPVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGV 444 (540)
T ss_dssp HHHHHHHHHHHHT--CSSEEEEEESCHHHHHHHHTTCTTSCEEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------
T ss_pred HHHHHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHhccCceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecce
Confidence 11223333332 45799999999999999999887422 233332 46889999999875 5776 899999999
Q ss_pred CCCC----ccEEEEcCCCCC----H--------------------------HHHHHHhcccccCCCccEEEEEeCCC
Q 007044 424 DIND----VQLIIQCEPPRD----V--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 424 Di~~----v~~VI~~d~P~s----~--------------------------~~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
|+|+ +++||++++|.. + ....|.+||.-|....--++++++++
T Consensus 445 D~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 445 EFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp -------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred ecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 9998 899999999842 1 23458899999986544456677777
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=7.3e-21 Score=209.93 Aligned_cols=312 Identities=18% Similarity=0.140 Sum_probs=200.2
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (620)
Q Consensus 131 ~~~~~Q~~~i~~----il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~ 206 (620)
+|+|.|.+.+.. +..|+|+++.||||||||++|++|++.. +++++|++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 799999997764 4589999999999999999999999971 24699999999999999999
Q ss_pred HHHhhcCCCceEEEEeCCcch---------------------------------HHHH------------------HHhc
Q 007044 207 FDVYGGAVGLTSCCLYGGAPY---------------------------------HAQE------------------FKLK 235 (620)
Q Consensus 207 ~~~~~~~~~~~v~~~~gg~~~---------------------------------~~~~------------------~~l~ 235 (620)
+..+....++++..+.|+.++ ..+. +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 998877778888888875432 1111 2233
Q ss_pred CCCcEEEeChHHHHHHHhcCCccC-CCccEEEeccchhhhhcC-------------------------------------
Q 007044 236 KGIDVVIGTPGRIKDHIERGNIDL-SSLKFRVLDEADEMLRMG------------------------------------- 277 (620)
Q Consensus 236 ~~~~IlV~Tp~rl~~~l~~~~~~l-~~l~~lVlDEah~~l~~~------------------------------------- 277 (620)
.+++|||+||+.|++...+..+.+ ....++||||||+|.+ .
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~ 225 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLR 225 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999876654433 4678999999999865 1
Q ss_pred ------------------cHHHHHHHH----------------------------Hh--------------c---cc---
Q 007044 278 ------------------FVEDVELIL----------------------------GK--------------V---ED--- 291 (620)
Q Consensus 278 ------------------f~~~l~~il----------------------------~~--------------~---~~--- 291 (620)
+...+..+. .. + +-
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~ 305 (551)
T 3crv_A 226 EVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEIS 305 (551)
T ss_dssp TSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTH
T ss_pred HHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHH
Confidence 011111000 00 0 00
Q ss_pred ------cCC-ceEEeecCCCChHHHHHHHHhcccCCcEEE-E--ecCcccccccceEEEEEeCCc----h----hhhhhH
Q 007044 292 ------ANK-VQTLLFSATLPSWVKHISTKFLKSDKKTID-L--VGNEKMKASTNVRHIVLPCSS----S----ARSQVI 353 (620)
Q Consensus 292 ------~~~-~q~ll~SATl~~~~~~~~~~~~~~~~~~i~-~--~~~~~~~~~~~i~~~~~~~~~----~----~~~~~l 353 (620)
... ..+|++||||.+ ...+...+. -+..... + ..-.... ..-..++++..- . .....+
T Consensus 306 ~~l~~~~~~~~svIltSaTL~~-~~~~~~~lG-l~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l 381 (551)
T 3crv_A 306 YYLNLLNDNELSIILMSGTLPP-REYMEKVWG-IKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRY 381 (551)
T ss_dssp HHHGGGGCTTCEEEEEESSCCC-HHHHHHTSC-CCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHH
T ss_pred HHHHHHhccCceEEEEeeCCCc-HHHHHHHhC-CCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHH
Confidence 012 578999999987 333333322 2211110 0 0001111 122233333211 1 111222
Q ss_pred HHHHHh-c-CCCCeEEEEEcccccHHHHHHhcccchhhcc-ccchHHHHHHHHHhhcCCceEEEec--ccccccCCCC--
Q 007044 354 PDIIRC-Y-SSGGRTIIFTETKESASQLADLLPGARALHG-DIQQSQREVTLAGFRSGKFMTLVAT--NVAARGLDIN-- 426 (620)
Q Consensus 354 ~~ll~~-~-~~~~~~iVF~~t~~~~~~l~~~l~~~~~lh~-~l~~~~R~~~~~~F~~g~~~vLvaT--dv~~rGlDi~-- 426 (620)
...+.. . ..++.+|||++|....+.++..+..-....+ +++ +...++.|+.+.-.||+|| ..+++|||+|
T Consensus 382 ~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 382 ADYLLKIYFQAKANVLVVFPSYEIMDRVMSRISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp HHHHHHHHHHCSSEEEEEESCHHHHHHHHTTCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEET
T ss_pred HHHHHHHHHhCCCCEEEEecCHHHHHHHHHhcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccccc
Confidence 222221 1 2457999999999999999985432112222 333 4567888854334899998 6999999999
Q ss_pred ---CccEEEEcCCCCC---------------------H-H--------HHHHHhcccccCCCccEEEEEeCCC
Q 007044 427 ---DVQLIIQCEPPRD---------------------V-E--------AYIHRSGRTGRAGNTGVAVMLYDPR 466 (620)
Q Consensus 427 ---~v~~VI~~d~P~s---------------------~-~--------~yiqr~GRtgR~g~~G~~i~l~~~~ 466 (620)
.++.||..++|.. . . ...|.+||.-|....--++.+++++
T Consensus 459 ~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp TEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred CCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3788998887731 1 1 1238889999987666677788888
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=3e-22 Score=202.28 Aligned_cols=155 Identities=20% Similarity=0.132 Sum_probs=127.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..|+|+|.++++.++.+++.++++|||+|||+++++++...+..+. .++||++||++|+.|+.+++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS------------SEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------CeEEEEECCHHHHHHHHHHHHH
Confidence 4899999999999998889999999999999999998887765431 2599999999999999999999
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
++...+..+..+++|..... ....+.+|+|+||+++... ....+.++++||+||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 98766778888888875432 2235689999999988554 223467889999999999973 4677788877
Q ss_pred cccCCceEEeecCCCChHH
Q 007044 290 EDANKVQTLLFSATLPSWV 308 (620)
Q Consensus 290 ~~~~~~q~ll~SATl~~~~ 308 (620)
.. ..++++||||+++..
T Consensus 250 ~~--~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 250 NN--CMFKFGLSGSLRDGK 266 (282)
T ss_dssp TT--CCEEEEECSSCCTTS
T ss_pred hc--CCeEEEEeCCCCCcc
Confidence 55 689999999998754
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=1.3e-18 Score=170.62 Aligned_cols=138 Identities=21% Similarity=0.161 Sum_probs=111.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..|+++|.++++.++.++++++++|||+|||++++.++... . .++||++||++|+.|+.+.+..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~-------------~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S-------------TPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---C-------------SCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---C-------------CCEEEEeCCHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999998887653 1 2399999999999999999877
Q ss_pred hhcCCCce-EEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 210 YGGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 210 ~~~~~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
+ ++. +..+.|+.. ...+|+|+||+.+...+.. ....+++||+||||++.+..+. .++..
T Consensus 156 ~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHT
T ss_pred C----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHh
Confidence 3 567 777777664 2589999999999876652 1245899999999999876643 45555
Q ss_pred ccccCCceEEeecCCCCh
Q 007044 289 VEDANKVQTLLFSATLPS 306 (620)
Q Consensus 289 ~~~~~~~q~ll~SATl~~ 306 (620)
++ ..++++||||++.
T Consensus 216 ~~---~~~~l~LSATp~r 230 (237)
T 2fz4_A 216 SI---APFRLGLTATFER 230 (237)
T ss_dssp CC---CSEEEEEEESCC-
T ss_pred cc---CCEEEEEecCCCC
Confidence 54 4689999999875
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.78 E-value=1.2e-17 Score=185.70 Aligned_cols=317 Identities=18% Similarity=0.143 Sum_probs=191.2
Q ss_pred CCCcHHHHHHHH----HHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHH
Q 007044 130 ESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (620)
Q Consensus 130 ~~~~~~Q~~~i~----~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~ 205 (620)
.+|+|.|.+.+. .+.+|+++++.||||||||++|++|++..+... +++++|++||++|+.|+.+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------~~kvli~t~T~~l~~Qi~~ 69 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------KLKVLYLVRTNSQEEQVIK 69 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------------CCeEEEECCCHHHHHHHHH
Confidence 468999998875 456899999999999999999999999987542 2469999999999999999
Q ss_pred HHHHhhcCCCceEEEEeCCcchHH------------------HH------------------------------------
Q 007044 206 DFDVYGGAVGLTSCCLYGGAPYHA------------------QE------------------------------------ 231 (620)
Q Consensus 206 ~~~~~~~~~~~~v~~~~gg~~~~~------------------~~------------------------------------ 231 (620)
++..+....++++..++|+.++-- ..
T Consensus 70 el~~l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~ 149 (620)
T 4a15_A 70 ELRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELP 149 (620)
T ss_dssp HHHHHHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCC
T ss_pred HHHHHhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCC
Confidence 999887666777777776532100 00
Q ss_pred --------------------HHhcCCCcEEEeChHHHHHHHhcCC----c-cCCCccEEEeccchhhhhc----------
Q 007044 232 --------------------FKLKKGIDVVIGTPGRIKDHIERGN----I-DLSSLKFRVLDEADEMLRM---------- 276 (620)
Q Consensus 232 --------------------~~l~~~~~IlV~Tp~rl~~~l~~~~----~-~l~~l~~lVlDEah~~l~~---------- 276 (620)
+.....+||||+.+..|++...+.. + ....-.++||||||.+.+.
T Consensus 150 die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls 229 (620)
T 4a15_A 150 TAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRIS 229 (620)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEE
T ss_pred CHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeC
Confidence 0111248999999988877653321 1 1233468999999996420
Q ss_pred ----------------Cc----------HHH----HH-----------------------------------HHHHhc--
Q 007044 277 ----------------GF----------VED----VE-----------------------------------LILGKV-- 289 (620)
Q Consensus 277 ----------------~f----------~~~----l~-----------------------------------~il~~~-- 289 (620)
.+ ... +. .++..+
T Consensus 230 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~ 309 (620)
T 4a15_A 230 VESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYL 309 (620)
T ss_dssp HHHHHHHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 00 000 00 000000
Q ss_pred --------------------------------ccc-----------------------------CCceEEeecCCCChHH
Q 007044 290 --------------------------------EDA-----------------------------NKVQTLLFSATLPSWV 308 (620)
Q Consensus 290 --------------------------------~~~-----------------------------~~~q~ll~SATl~~~~ 308 (620)
... ....+|++||||.+ .
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~ 388 (620)
T 4a15_A 310 FGEYVENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-F 388 (620)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-H
T ss_pred HHHHHHhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-H
Confidence 000 01245889999986 3
Q ss_pred HHHHHHhcccCCcEEEEecCcccccccceEEEEEeCC--------chh----hhhhHHHHHHhcCCCCeEEEEEcccccH
Q 007044 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS--------SSA----RSQVIPDIIRCYSSGGRTIIFTETKESA 376 (620)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~--------~~~----~~~~l~~ll~~~~~~~~~iVF~~t~~~~ 376 (620)
..+..... -....+.+. ......+.. .++... ... ....+..++.. .+++++||++|....
T Consensus 389 ~~~~~~lG-l~~~~~~~~---spf~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~--~~g~~lvlF~Sy~~l 461 (620)
T 4a15_A 389 DFYSDITG-FEIPFKKIG---EIFPPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILK--VKKNTIVYFPSYSLM 461 (620)
T ss_dssp HHHHHHHC-CCCCEEECC---CCSCGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHH--HCSCEEEEESCHHHH
T ss_pred HHHHHHhC-CCceeeecC---CCCCHHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh--CCCCEEEEeCCHHHH
Confidence 33333332 122222221 111122222 222111 111 11223333333 357899999999999
Q ss_pred HHHHHhcccch-hhccccchHHHHHHHHHhhcCCceEEEecc--cccccCCCCC--ccEEEEcCCCCC------------
Q 007044 377 SQLADLLPGAR-ALHGDIQQSQREVTLAGFRSGKFMTLVATN--VAARGLDIND--VQLIIQCEPPRD------------ 439 (620)
Q Consensus 377 ~~l~~~l~~~~-~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd--v~~rGlDi~~--v~~VI~~d~P~s------------ 439 (620)
+.++..+.... ....+++...|..+++.|+ +.-.||++|. .+++|||+|+ ++.||..++|..
T Consensus 462 ~~v~~~l~~~~~~~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~ 540 (620)
T 4a15_A 462 DRVENRVSFEHMKEYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDY 540 (620)
T ss_dssp HHHTSSCCSCCEECCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHH
Confidence 99998886110 0333445568999999999 8889999985 8999999997 778999888842
Q ss_pred -------HH----------HHHHHhcccccCCCccEEEEEeCCCc
Q 007044 440 -------VE----------AYIHRSGRTGRAGNTGVAVMLYDPRK 467 (620)
Q Consensus 440 -------~~----------~yiqr~GRtgR~g~~G~~i~l~~~~~ 467 (620)
.- ...|.+||.-|.-..--++++++++.
T Consensus 541 ~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 541 YERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp HHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred HHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch
Confidence 11 12588999999876555666677663
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.72 E-value=4.2e-18 Score=169.96 Aligned_cols=122 Identities=15% Similarity=0.235 Sum_probs=93.6
Q ss_pred CchhhhhhHHHHHHhc-CCCCeEEEEEcccccHHHHHHhcc-----cchhhccccchHHHHHHHHHhhcC-Cce-EEEec
Q 007044 345 SSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVAT 416 (620)
Q Consensus 345 ~~~~~~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~F~~g-~~~-vLvaT 416 (620)
..+.|...|..++... ..+.++||||++...++.+...|. .+..+||++++.+|..+++.|++| .++ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3566788888887654 356899999999999999998885 466799999999999999999998 677 78999
Q ss_pred ccccccCCCCCccEEEEcCCCCCHHHHHHHhcccccCCCccEE--EEEeCCC
Q 007044 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (620)
Q Consensus 417 dv~~rGlDi~~v~~VI~~d~P~s~~~yiqr~GRtgR~g~~G~~--i~l~~~~ 466 (620)
+++++|||++++++||+||+|+++..|+||+||++|.|+.+.+ +.|+...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999997654 5666665
No 94
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=99.40 E-value=2.3e-13 Score=109.56 Aligned_cols=79 Identities=29% Similarity=0.404 Sum_probs=74.5
Q ss_pred HcCCcccccccccCCCCCcEEEEEEcCCCCCCcchHHHHHHhhCCcccccceeeEEEecCCCeEEEEccCCChHHhhcc
Q 007044 541 AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 619 (620)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
++|++++++|||+++.+|++|+.+..++++..++++|++|++.+++...++|++|++.+|++|++||||+++++.+++.
T Consensus 2 ~SG~te~~~RSLLt~~eG~~Tl~l~~~~~i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~~GavFDvP~e~~~~~~~~ 80 (92)
T 2e29_A 2 SSGSSGFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAE 80 (92)
T ss_dssp CCSCSCCCCCCCCCCCCCEEEEEEECSSCCSSTHHHHHHHHHHSCHHHHTTCEEEEECTTSSEEEEEEEHHHHHHHHHH
T ss_pred CCCcCCCCCcccccCCCCCEEEEEecCCcccchHHHHHHHHHhcCHHHHhhhCeEEEecCCCEEEEECcHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999998877899999999999999999999999998853
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=1.8e-09 Score=119.86 Aligned_cols=145 Identities=19% Similarity=0.228 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHcCCcEEEECCCCChhh--HHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 133 FPIQAMTFDMVLDGSDLVGRARTGQGKT--LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 133 ~~~Q~~~i~~il~g~dvi~~a~TGsGKT--la~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
+++|..+++.++.+++++++|++||||| ++++++.+..+... .+.++++++||..+|.++.+.+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-----------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-----------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-----------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 66788887765321 2346999999999999999887665
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCc-EEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGID-VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 211 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~-IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
+...++..... .+.+. + ....+ ++-.+|+.. . +.........+++||+|||+ |++ ...+..++..+
T Consensus 220 ~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL 286 (608)
T ss_dssp HHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC
T ss_pred HhcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC
Confidence 44333221100 00000 0 00111 222233321 1 11111222378999999999 655 46678888888
Q ss_pred cccCCceEEeecCC
Q 007044 290 EDANKVQTLLFSAT 303 (620)
Q Consensus 290 ~~~~~~q~ll~SAT 303 (620)
+. ..|++++.=.
T Consensus 287 ~~--~~~liLvGD~ 298 (608)
T 1w36_D 287 PD--HARVIFLGDR 298 (608)
T ss_dssp CT--TCEEEEEECT
T ss_pred CC--CCEEEEEcch
Confidence 76 5788887543
No 96
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=98.40 E-value=2.3e-07 Score=72.76 Aligned_cols=57 Identities=7% Similarity=0.032 Sum_probs=49.3
Q ss_pred EEEEEEcCCC-CCCcchHHHHHHhhCCcccccceeeEEEecCCCeEEEEccCCChHHhhcc
Q 007044 560 VTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 619 (620)
Q Consensus 560 ~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
++++++.|+. .+.|++++++|++..+..+ .+||+|+|++ ++|+|+||.+.++.+++.
T Consensus 1 ~~~~i~~Grk~~~~p~~ivg~i~~~~gi~~-~~IG~I~i~d--~~s~v~v~~~~~~~~~~~ 58 (76)
T 2g0c_A 1 MKLYFNGGKKKKIRAVDFVGTIAKIDGVSA-DDIGIITIMD--NASYVEILNGKGPHVLKV 58 (76)
T ss_dssp CEEEESCCCC----CHHHHHHHHTSTTCCG-GGEEEEEECS--SCEEEEECTTCHHHHHHH
T ss_pred CEEEEeCCCccCCCHHHHHHHHHHccCCCh-hhccEEEEeC--CcEEEEECHHHHHHHHHH
Confidence 4789999998 8999999999999988764 7999999999 899999999999998865
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.07 E-value=8.9e-06 Score=91.06 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~d-vi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
.+.+-|.+|+..++..++ .|++||+|||||.+.+-.+.+.+..+ .++|+++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-------------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG-------------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC-------------CeEEEEcCchHHHHHHHHHHHh
Confidence 468899999999887665 78999999999988666565555443 2499999999999999888765
Q ss_pred h
Q 007044 210 Y 210 (620)
Q Consensus 210 ~ 210 (620)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.05 E-value=1.9e-05 Score=86.59 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.+++.|..++..++.++.+++.|+.|||||.... .++..+... +.++++++||...|..+.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~------------g~~Vl~~ApT~~Aa~~L~e~~~-- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL------------GLEVGLCAPTGKAARRLGEVTG-- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc------------CCeEEEecCcHHHHHHhHhhhc--
Confidence 6899999999999999999999999999997643 233333321 2348999999999887766431
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhcc
Q 007044 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (620)
Q Consensus 211 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~ 290 (620)
.....+ ... +. . .|. .+.+........++||+|||+.+. ...+..++..++
T Consensus 254 -----~~a~Ti------h~l---l~----~---~~~----~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 254 -----RTASTV------HRL---LG----Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp -----SCEEEH------HHH---TT----E---ETT----EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred -----ccHHHH------HHH---Hc----C---Ccc----hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 111111 100 00 0 000 011112234467899999999653 346677777776
Q ss_pred ccCCceEEee
Q 007044 291 DANKVQTLLF 300 (620)
Q Consensus 291 ~~~~~q~ll~ 300 (620)
. ..+++++
T Consensus 305 ~--~~~lilv 312 (574)
T 3e1s_A 305 P--GARVLLV 312 (574)
T ss_dssp T--TCEEEEE
T ss_pred C--CCEEEEE
Confidence 4 4455554
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.02 E-value=3e-05 Score=83.04 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=50.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcC-----CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH
Q 007044 124 LKSKGIESLFPIQAMTFDMVLDG-----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (620)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~il~g-----~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre 198 (620)
..-+.|..+++-|.+++..++.. ..+++.|+.|||||.... .++..+..... .++++++||..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~-----------~~il~~a~T~~ 85 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGE-----------TGIILAAPTHA 85 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTC-----------CCEEEEESSHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCC-----------ceEEEecCcHH
Confidence 34467899999999999877532 389999999999997543 34444433211 24899999988
Q ss_pred HHHHHHHHH
Q 007044 199 LAKQVHEDF 207 (620)
Q Consensus 199 La~Qv~~~~ 207 (620)
.|..+.+.+
T Consensus 86 Aa~~l~~~~ 94 (459)
T 3upu_A 86 AKKILSKLS 94 (459)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 887766544
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.01 E-value=3.8e-05 Score=85.47 Aligned_cols=70 Identities=21% Similarity=0.191 Sum_probs=54.3
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
+..+++.|.+++..++.+.-++++||+|||||.+..-- +..+... .+.++|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~-i~~l~~~-----------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQ-----------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHH-HHHHHTS-----------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHH-HHHHHHc-----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 45688999999999998888999999999999875433 3344331 12359999999999999988876
Q ss_pred Hh
Q 007044 209 VY 210 (620)
Q Consensus 209 ~~ 210 (620)
..
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=6.8e-05 Score=85.44 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+++.|.+|+..++.+.-++++||+|||||.+..--+...+... +.++|+++||...+.++.+.+..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~------------~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIH------------KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHH------------CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCC------------CCeEEEEcCcHHHHHHHHHHHHh
Confidence 457899999999998877789999999999986544333222211 12499999999999999988876
Q ss_pred h
Q 007044 210 Y 210 (620)
Q Consensus 210 ~ 210 (620)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 4
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.79 E-value=0.00011 Score=83.58 Aligned_cols=69 Identities=23% Similarity=0.212 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+++.|.+++..++.+.-.+++||+|||||.+..- ++..+... .+.++|+++||...+.++.+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-----------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-----------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT-----------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-----------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 357899999999999888899999999999987543 34444431 123599999999999999888765
Q ss_pred h
Q 007044 210 Y 210 (620)
Q Consensus 210 ~ 210 (620)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 3
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.29 E-value=0.0028 Score=65.44 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.|+|+|...+..+...+-+++..+-+.|||.+.+..++..+... .+..+++++||+..|..+.+.+..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----------~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----------KDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 78999999998776556789999999999998776666544432 2345999999999999888777765
Q ss_pred hc
Q 007044 211 GG 212 (620)
Q Consensus 211 ~~ 212 (620)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.99 E-value=0.0067 Score=66.83 Aligned_cols=143 Identities=10% Similarity=0.116 Sum_probs=85.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.|+|+|...+..+...+-+++..+-|+|||.+.+..++..+... .+..+++++||+..|..+.+.+..+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-----------~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----------KDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-----------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-----------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 58999999998775567799999999999998766655555443 2335999999999999999888776
Q ss_pred hcCCC--ceEEEE-eCCcchHHHHHHhcCCCcEEEeC--hHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHH
Q 007044 211 GGAVG--LTSCCL-YGGAPYHAQEFKLKKGIDVVIGT--PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (620)
Q Consensus 211 ~~~~~--~~v~~~-~gg~~~~~~~~~l~~~~~IlV~T--p~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~i 285 (620)
....+ +..... ..... ..+..+..|.+.+ |+.+.- .+..++|+||+|.+-+. .+.+..+
T Consensus 232 i~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~ 295 (592)
T 3cpe_A 232 IELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAI 295 (592)
T ss_dssp HTTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHH
T ss_pred HHhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHH
Confidence 65432 111000 01000 1112344444432 444322 13578999999987431 2333444
Q ss_pred HHhccccCCceEEee
Q 007044 286 LGKVEDANKVQTLLF 300 (620)
Q Consensus 286 l~~~~~~~~~q~ll~ 300 (620)
...+....+.+++++
T Consensus 296 ~~~l~~~~~~~ii~i 310 (592)
T 3cpe_A 296 QPVISSGRRSKIIIT 310 (592)
T ss_dssp HHHHSSSSCCEEEEE
T ss_pred HHHhccCCCceEEEE
Confidence 444432123444443
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.71 E-value=0.01 Score=54.27 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHH---------cCCcEEEECCCCChhhHHhH
Q 007044 133 FPIQAMTFDMVL---------DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 133 ~~~Q~~~i~~il---------~g~dvi~~a~TGsGKTla~~ 164 (620)
.+.|..++..+. .|+.+++.||+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 345665554443 47889999999999997543
No 106
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.69 E-value=0.0093 Score=59.51 Aligned_cols=125 Identities=13% Similarity=0.053 Sum_probs=84.9
Q ss_pred chhhhhhHHHHHHhcC-CCCeEEEEEcccccHHHHHHhcc----cchhhccccchHHHHHHHHHhhcCCceEEEeccccc
Q 007044 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (620)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~ 420 (620)
.+.|..+|..++.... .+.++|||++..+..+-+..++. .+..+.|.... .+.+ -.++.+.+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAA----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhh----cccCCceEEEEECCCC
Confidence 5778889999888664 56799999999999999999887 44556676433 2222 1245566666566666
Q ss_pred ccCC-----CCCccEEEEcCCCCCHHHH-HHHhcccccCC----CccEEEEEeCCC--chHHHHHHH
Q 007044 421 RGLD-----INDVQLIIQCEPPRDVEAY-IHRSGRTGRAG----NTGVAVMLYDPR--KSSVSKIER 475 (620)
Q Consensus 421 rGlD-----i~~v~~VI~~d~P~s~~~y-iqr~GRtgR~g----~~G~~i~l~~~~--~~~~~~i~~ 475 (620)
-|+| +...+.||.||.-+++..= +|.+-|+.|.| +.-.++.|+... +.....+-+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 6675 6789999999999999885 89888888873 244567788777 444444433
No 107
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.55 E-value=0.0047 Score=68.92 Aligned_cols=81 Identities=21% Similarity=0.162 Sum_probs=60.0
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+..... ..-++|++++|+..+.++.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---------~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---------SPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---------ChhhEEEEeccHHHHHHHHHHHHH
Confidence 4789999999973 35679999999999999877666666654321 122599999999999999999987
Q ss_pred hhcC--CCceEEEE
Q 007044 210 YGGA--VGLTSCCL 221 (620)
Q Consensus 210 ~~~~--~~~~v~~~ 221 (620)
+... .++.+.++
T Consensus 77 ~~~~~~~~~~v~Tf 90 (647)
T 3lfu_A 77 LMGTSQGGMWVGTF 90 (647)
T ss_dssp HHCSCCTTCEEEEH
T ss_pred HhccccCCcEEEcH
Confidence 6432 34445444
No 108
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0075 Score=46.02 Aligned_cols=58 Identities=21% Similarity=0.154 Sum_probs=46.1
Q ss_pred ccccccCCCCCcEEEEEEcCCCCCCcchHHHHHHhhCCcccccceeeEEEecCCCeEEEEccCCChH
Q 007044 548 KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLD 614 (620)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 614 (620)
+++||+++.+|++|+.++ |.++ +..-++.+|+++ | . +||+|+..+ .++++||+.++.+
T Consensus 2 ~~~SLLTGEEGw~Tlkl~-G~rL-S~~R~VAlLk~a-G---~-~iGkI~~~~--~gayaDlr~e~l~ 59 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKAT-GPRL-SLPRLVALLKGQ-G---L-EVGKVAEAE--GGFYVDLRPEARP 59 (88)
T ss_dssp CCBCTTTCCBSCEEEEEE-CTTC-CHHHHHHHHHHT-T---C-CEEEEEEET--TEEEEEECTTCCC
T ss_pred CcccccccCcceEEEEEe-cccc-cHHHHHHHHHHc-c---c-ccccEEecc--ceeEEecChHHcc
Confidence 468999999999998886 4443 455577888875 2 2 899999988 7999999998765
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.39 E-value=0.0095 Score=62.31 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=54.4
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcc
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~ 226 (620)
+-.++.|+.|||||.... +.+.. . ..+|++||++++..+.+.+...+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~-~-------------~~lVlTpT~~aa~~l~~kl~~~~~~------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF-E-------------EDLILVPGRQAAEMIRRRANASGII------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT-T-------------TCEEEESCHHHHHHHHHHHTTTSCC-------------
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc-C-------------CeEEEeCCHHHHHHHHHHhhhcCcc-------------
Confidence 347899999999998542 22221 1 1699999999999887776432100
Q ss_pred hHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCc
Q 007044 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278 (620)
Q Consensus 227 ~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f 278 (620)
....+-|.|-+.++. .......-..++||+|||- |++.+.
T Consensus 211 ---------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~~ 250 (446)
T 3vkw_A 211 ---------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTGC 250 (446)
T ss_dssp ---------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHHH
T ss_pred ---------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHHH
Confidence 012233667665533 2222222347899999998 545543
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.36 E-value=0.008 Score=55.69 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=27.4
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEccc
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (620)
|+=.++.|++|||||.+.+--+......+. +++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~-------------kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ-------------KIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------CEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------EEEEEEec
Confidence 456788999999999876655544444433 38999987
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.32 E-value=0.0084 Score=67.76 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..++|-|.+++.. .+..++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---------~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---------APWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999975 35689999999999999877666666654211 123599999999999999988876
Q ss_pred hh
Q 007044 210 YG 211 (620)
Q Consensus 210 ~~ 211 (620)
+.
T Consensus 79 ~l 80 (724)
T 1pjr_A 79 LL 80 (724)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 112
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.29 E-value=0.0015 Score=60.43 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=27.1
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
.|+-.++.|++|+|||...+--+......+. +++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~-------------~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKK-------------KVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC-------------EEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCC-------------eEEEEeecc
Confidence 3566789999999999876544444433332 488888873
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.22 E-value=0.0098 Score=56.52 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=53.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.|.-+++.|++|+|||.+.+-.+......+. +++++.|...- . . ...+....|+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~-------------kVli~~~~~d~--r-~--~~~i~srlG~~~------ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV-------------KYLVFKPKIDT--R-S--IRNIQSRTGTSL------ 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEECCCG--G-G--CSSCCCCCCCSS------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC-------------EEEEEEeccCc--h-H--HHHHHHhcCCCc------
Confidence 4566888999999999876555555444432 38888775420 0 0 001111111110
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhh
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~ 273 (620)
..+-+.+...+++.+.... .-...++||+||++.+
T Consensus 67 -------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 2234566777777776432 2345789999999965
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.95 E-value=0.041 Score=55.42 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 368999999999999754
No 115
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.86 E-value=0.01 Score=66.62 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q 007044 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~ 210 (620)
.++|-|.+++.. .+..++|.|+.|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---------~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 578999999975 36789999999999998876666655543111 1225999999999999999998776
Q ss_pred hcC---CCceEEEEe
Q 007044 211 GGA---VGLTSCCLY 222 (620)
Q Consensus 211 ~~~---~~~~v~~~~ 222 (620)
... .++.+.+++
T Consensus 71 l~~~~~~~~~v~Tfh 85 (673)
T 1uaa_A 71 LGRKEARGLMISTFH 85 (673)
T ss_dssp SCTTTTTTSEEEEHH
T ss_pred cCcccccCCEEEeHH
Confidence 432 245565554
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.051 Score=54.50 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=19.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.+.++++.||+|+|||++.- .++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 35789999999999997643 3334443
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.56 E-value=0.034 Score=56.39 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHH----cCC---cEEEECCCCChhhHHhHHHHHHHHh
Q 007044 132 LFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 132 ~~~~Q~~~i~~il----~g~---dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
++|+|.+++..+. +|+ -+++.||.|+|||.... .+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 4688888876654 342 48999999999997543 3344444
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.55 E-value=0.051 Score=56.88 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=72.2
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEc--ccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL--PTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~--PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.-+++.|++|+|||....--+......+. +++++. +.|.-+. +.+..++...++.+.....+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~-------------kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~ 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGY-------------KVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNN 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEecCccchhHH---HHHHHHHHhcCCceeecccc
Confidence 45888999999999865433332222221 255544 3333332 33444444445544322222
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHH-HHHhcCCccCCCccEEEeccchhhh---hcCcHHHHHHHHHhccccCCceEEee
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIK-DHIERGNIDLSSLKFRVLDEADEML---RMGFVEDVELILGKVEDANKVQTLLF 300 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~-~~l~~~~~~l~~l~~lVlDEah~~l---~~~f~~~l~~il~~~~~~~~~q~ll~ 300 (620)
. .|..+. +.+.. ......+++|+|++-++. +..+...+..+...+.. ..-++++
T Consensus 162 ~------------------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p--d~vlLVl 219 (433)
T 3kl4_A 162 Q------------------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP--DDVILVI 219 (433)
T ss_dssp S------------------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC--SEEEEEE
T ss_pred C------------------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC--cceEEEE
Confidence 1 122221 22221 123467899999998643 34466677777776643 4566778
Q ss_pred cCCCChHHHHHHHHhc
Q 007044 301 SATLPSWVKHISTKFL 316 (620)
Q Consensus 301 SATl~~~~~~~~~~~~ 316 (620)
+|+........+..|.
T Consensus 220 Da~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 220 DASIGQKAYDLASRFH 235 (433)
T ss_dssp EGGGGGGGHHHHHHHH
T ss_pred eCccchHHHHHHHHHh
Confidence 8887776666666664
No 119
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.55 E-value=0.026 Score=52.90 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=28.2
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
|+=.++.|+.|||||.+.+--+......+. +++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~-------------kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ-------------HAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------------CEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------EEEEEEecc
Confidence 444678999999999877666666555543 389999875
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.24 E-value=0.039 Score=52.49 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=16.3
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.24 E-value=0.026 Score=62.04 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCcHHHHHHHHHHHc--CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 131 SLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 131 ~~~~~Q~~~i~~il~--g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
.+|.-|.+++..++. ..-.++.|+-|.|||.+..+.+.... . +++|.+||.+-+..+.+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-~---------------~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-G---------------RAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-S---------------CEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-h---------------CcEEECCCHHHHHHHHHHhh
Confidence 679999999988885 34579999999999977666654332 1 17999999877665443221
Q ss_pred HhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHh
Q 007044 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (620)
Q Consensus 209 ~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 288 (620)
. .|-+..|..+.. .+...++||||||=.+- .+.+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 0 133345665432 24458899999998653 4555555542
Q ss_pred ccccCCceEEeecCCCC
Q 007044 289 VEDANKVQTLLFSATLP 305 (620)
Q Consensus 289 ~~~~~~~q~ll~SATl~ 305 (620)
...++||.|..
T Consensus 279 ------~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 ------FPRTLLTTTVQ 289 (671)
T ss_dssp ------SSEEEEEEEBS
T ss_pred ------CCeEEEEecCC
Confidence 23577777753
No 122
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.06 E-value=0.054 Score=50.70 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=52.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.|.=.++.|+.|||||...+--+......+ .+++|+.|...--. .-..+....|+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g-------------~kvli~kp~~D~R~----~~~~I~Sr~G~~~------ 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAK-------------QKVVVFKPAIDDRY----HKEKVVSHNGNAI------ 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTT-------------CCEEEEEEC---------------CBTTBCC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcC-------------CceEEEEeccCCcc----hhhhHHHhcCCce------
Confidence 456678999999999976554444433333 23899998643110 0011112222221
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHH
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 286 (620)
.-+.|..+..+.+.+ ..++++|++|||+-+ +....+.+..+.
T Consensus 84 -------------~a~~v~~~~di~~~i------~~~~dvV~IDEaQFf-~~~~v~~l~~la 125 (219)
T 3e2i_A 84 -------------EAINISKASEIMTHD------LTNVDVIGIDEVQFF-DDEIVSIVEKLS 125 (219)
T ss_dssp -------------EEEEESSGGGGGGSC------CTTCSEEEECCGGGS-CTHHHHHHHHHH
T ss_pred -------------eeEEeCCHHHHHHHH------hcCCCEEEEechhcC-CHHHHHHHHHHH
Confidence 224455554443332 246789999999966 444455555554
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.05 E-value=0.014 Score=51.64 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|..+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6888999999999999743
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.04 E-value=0.046 Score=51.73 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=29.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
.|+=.++.|+.|||||.+.+--+......+. +++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~-------------kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTC-------------CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------eEEEEeecC
Confidence 4666788999999999876666655554443 389988864
No 125
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.01 E-value=0.034 Score=66.66 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 130 ~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+|+-|.++|..- +++++|.|..|||||.+.+--++..+..+... ...-++|++++|+..|..+.+.+..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~-------~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP-------IDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC-------CCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC-------CCccceEEEeccHHHHHHHHHHHHH
Confidence 36899999999754 88999999999999998877788777764311 1223599999999999999888865
Q ss_pred h
Q 007044 210 Y 210 (620)
Q Consensus 210 ~ 210 (620)
.
T Consensus 80 ~ 80 (1232)
T 3u4q_A 80 A 80 (1232)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.86 E-value=0.065 Score=55.02 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999754
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.81 E-value=0.079 Score=51.77 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.9
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999754
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.31 E-value=0.083 Score=48.67 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=27.5
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEccc
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Pt 196 (620)
.|+=.++.|++|||||.-.+-.+-+....+. +++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~-------------kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEccc
Confidence 4566889999999999655544444444432 38999887
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.29 E-value=0.27 Score=45.33 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=18.2
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
+.+++.||+|+|||.... .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 789999999999997543 3334443
No 130
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.16 E-value=0.19 Score=52.94 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.80 E-value=0.15 Score=52.38 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999754
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.70 E-value=0.55 Score=43.38 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.5
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999743
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.67 E-value=0.41 Score=50.06 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=68.7
Q ss_pred CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEc--ccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL--PTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~--PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.-+++.|++|+|||....--+ ..+... +.+++++. |.|.-+ .+.+..++...++.+.....+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~~------------G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQKR------------GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHTT------------TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHHC------------CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC
Confidence 458899999999998654333 233322 11355555 444433 344555555555654433222
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHH-HHHhcCCccCCCccEEEeccchhhhh-cCcHHHHHHHHHhccccCCceEEeecC
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIK-DHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~-~~l~~~~~~l~~l~~lVlDEah~~l~-~~f~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
.. |..+. +.+.. .....++++|+|.+=++.. ......+..+...... ..-+++++|
T Consensus 165 ~d------------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~p--d~vlLVvDA 222 (443)
T 3dm5_A 165 KD------------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHP--HEVILVIDG 222 (443)
T ss_dssp CC------------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC--SEEEEEEEG
T ss_pred CC------------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcC--ceEEEEEeC
Confidence 21 22221 11211 1123467888888854421 1233445555554433 345677888
Q ss_pred CCChHHHHHHHHhc
Q 007044 303 TLPSWVKHISTKFL 316 (620)
Q Consensus 303 Tl~~~~~~~~~~~~ 316 (620)
|........+..|.
T Consensus 223 ~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 223 TIGQQAYNQALAFK 236 (443)
T ss_dssp GGGGGHHHHHHHHH
T ss_pred CCchhHHHHHHHHH
Confidence 87776666666665
No 134
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.64 E-value=0.19 Score=50.45 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=22.0
Q ss_pred CCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEe
Q 007044 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll 299 (620)
....+||+||+|.+........+..++...+. +.++++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~--~~~iI~ 141 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSS--NCSIII 141 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGG--GCEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCC--CcEEEE
Confidence 36789999999988512233444444544332 344444
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.54 E-value=0.068 Score=53.22 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999754
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.50 E-value=0.36 Score=48.86 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
.|..|+++--...+.+.|...-+.. -....+++.||+|+|||...
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 4566777766666666665432110 12234999999999999754
No 137
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.99 E-value=0.78 Score=42.16 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHH-HHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE-LAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptre-La~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
...+++..++|.|||.+++--++..+..+. +|+|+.=.+. .-.-=...+..+ ++.+...--|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-------------rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~g 90 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK-------------NVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATG 90 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC-------------CEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC-------------eEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccc
Confidence 357999999999999998888887777654 3788742221 000000112222 2322221111
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCc--HHHHHHHHHhccccCCceEEeecC
Q 007044 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSA 302 (620)
Q Consensus 225 ~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f--~~~l~~il~~~~~~~~~q~ll~SA 302 (620)
-....+...- +. ......+....+ .+.-..+++|||||.-..+..++ .+++..++...+. ..-+|+.+-
T Consensus 91 f~~~~~~~~~----~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~--~~~vIlTGr 161 (196)
T 1g5t_A 91 FTWETQNREA----DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG--HQTVIITGR 161 (196)
T ss_dssp CCCCGGGHHH----HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT--TCEEEEECS
T ss_pred cccCCCCcHH----HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC--CCEEEEECC
Confidence 1100000000 00 000111222221 12235689999999988776663 3455556655554 445555555
Q ss_pred CCChHHHHHH
Q 007044 303 TLPSWVKHIS 312 (620)
Q Consensus 303 Tl~~~~~~~~ 312 (620)
-.|+++..++
T Consensus 162 ~ap~~l~e~A 171 (196)
T 1g5t_A 162 GCHRDILDLA 171 (196)
T ss_dssp SCCHHHHHHC
T ss_pred CCcHHHHHhC
Confidence 5666655543
No 138
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.91 E-value=0.31 Score=47.71 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=31.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHH--HHcCCcEEEECCCCChhhHHh
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDM--VLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--il~g~dvi~~a~TGsGKTla~ 163 (620)
...|+++.-....++.|...-. .+.+ .+.+.. +..++.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4567777766777666654311 1111 111111 124578999999999999754
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.78 E-value=0.27 Score=50.43 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.3
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.57 E-value=0.24 Score=50.60 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999754
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.31 E-value=0.5 Score=44.34 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
.|.-+++.||+|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46778999999999996543
No 142
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.28 E-value=0.35 Score=43.43 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
...+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999754
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.11 E-value=2.4 Score=39.39 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=14.0
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 144
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.06 E-value=2 Score=38.29 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.|++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999754
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.97 E-value=0.61 Score=46.39 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=14.2
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999754
No 146
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.96 E-value=0.69 Score=45.98 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=24.8
Q ss_pred CCCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeecCCCC
Q 007044 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~SATl~ 305 (620)
....+++|+||||.|... ....+++.+..++..-+++|.++-|
T Consensus 80 ~~~~kvviIdead~lt~~----a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ----AANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHH----HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cCCceEEEeccHHHhCHH----HHHHHHHHHhCCCCCeEEEEEECCh
Confidence 345789999999998532 2344555554433333444544533
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.70 E-value=0.86 Score=45.73 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.0
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..+++.||+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999754
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.63 E-value=2.6 Score=42.56 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.8
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999754
No 149
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.62 E-value=1.1 Score=39.60 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=53.5
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+| +.+.+ .+++..+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcCCE
Confidence 4999999999999999988764 57889999998766544333 2457899999 23333 567888888
Q ss_pred EEecc
Q 007044 265 RVLDE 269 (620)
Q Consensus 265 lVlDE 269 (620)
||.-.
T Consensus 107 Vi~~~ 111 (163)
T 2hjv_A 107 VINYD 111 (163)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88643
No 150
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.61 E-value=0.93 Score=41.52 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=53.4
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++.++++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-GLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-TCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-CCCcccCCE
Confidence 5999999999999999988765 57889999998766554333 24689999992 3333 567888888
Q ss_pred EEec
Q 007044 265 RVLD 268 (620)
Q Consensus 265 lVlD 268 (620)
||.=
T Consensus 126 VI~~ 129 (191)
T 2p6n_A 126 VINY 129 (191)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8763
No 151
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.22 E-value=0.22 Score=56.26 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=64.9
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEecc-cccccCC
Q 007044 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGLD 424 (620)
Q Consensus 354 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd-v~~rGlD 424 (620)
..++.....+.+++|.++|+.-+.+.+..+. .+..+||+++..+|...+..+.+|..+|+|+|. .+...++
T Consensus 408 l~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~ 487 (780)
T 1gm5_A 408 LAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH 487 (780)
T ss_dssp HHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCC
T ss_pred HHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhh
Confidence 3344444456899999999988877776554 566899999999999999999999999999995 3445788
Q ss_pred CCCccEEEEcC
Q 007044 425 INDVQLIIQCE 435 (620)
Q Consensus 425 i~~v~~VI~~d 435 (620)
+.++.+||.-.
T Consensus 488 ~~~l~lVVIDE 498 (780)
T 1gm5_A 488 FKNLGLVIIDE 498 (780)
T ss_dssp CSCCCEEEEES
T ss_pred ccCCceEEecc
Confidence 89999988633
No 152
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.10 E-value=0.45 Score=49.13 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.7
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999754
No 153
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.83 E-value=0.44 Score=47.78 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-----DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il-----~g~dvi~~a~TGsGKTla~ 163 (620)
.+..|+++.-...+++.|...-. .|.. .|.+. ..+.+++.||+|+|||+..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777777777777655311 1110 11111 2357999999999999754
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.28 E-value=1.2 Score=44.93 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.6
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999753
No 155
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.20 E-value=1.3 Score=47.01 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=55.8
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.|....+.+-||||||++..-.+ ... .. .+|||+|+...|.|+++++..+... .|..+-.-
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~~-~~--------------p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~ 73 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ERH-AG--------------PVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADW 73 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HHS-SS--------------CEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HHh-CC--------------CEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCc
Confidence 45678899999999998643322 221 11 1899999999999999999988643 23222211
Q ss_pred -------cchH-----HHH---HHh-cCCCcEEEeChHHHHHHH
Q 007044 225 -------APYH-----AQE---FKL-KKGIDVVIGTPGRIKDHI 252 (620)
Q Consensus 225 -------~~~~-----~~~---~~l-~~~~~IlV~Tp~rl~~~l 252 (620)
.... ... ..+ .....|||+|...++..+
T Consensus 74 e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp CSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred ccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 1110 111 122 245679999988886643
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.10 E-value=0.62 Score=50.06 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=24.6
Q ss_pred CCccEEEeccchhhhhc--CcHHHHHHHHHhccccCCceEEeecCCC
Q 007044 260 SSLKFRVLDEADEMLRM--GFVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~--~f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
..-.+|||||+|.|... ++...+..++... +..+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~----~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT----STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC----SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc----CCCEEEEEcCC
Confidence 34568999999998643 2334444444432 34567766663
No 157
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.00 E-value=2.4 Score=37.47 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=52.7
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++..+++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-G~d~~~~~~ 101 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR-GIDVQQVSL 101 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT-TCCCCSCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc-CCCcccCCE
Confidence 4999999999999999888764 57889999998766554333 24679999993 3333 467888888
Q ss_pred EEec
Q 007044 265 RVLD 268 (620)
Q Consensus 265 lVlD 268 (620)
||.-
T Consensus 102 Vi~~ 105 (165)
T 1fuk_A 102 VINY 105 (165)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8764
No 158
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.27 E-value=1.2 Score=39.87 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=53.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+++..+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++..++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~~ 104 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA-RGIDVKQVT 104 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC-TTTCCTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh-cCCCcccCC
Confidence 36999999999999999888653 57899999998876554333 24689999992 333 356788899
Q ss_pred EEEe
Q 007044 264 FRVL 267 (620)
Q Consensus 264 ~lVl 267 (620)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 159
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.26 E-value=2.8 Score=38.93 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=53.4
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|||+.-+..+++.+... ++.+..++|+.+...+...+ ....+|+|+| +.+.+ .+++..+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccCcE
Confidence 4999999999999999988764 57889999998876655443 2458899999 33333 567888998
Q ss_pred EEe
Q 007044 265 RVL 267 (620)
Q Consensus 265 lVl 267 (620)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 160
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.20 E-value=0.59 Score=42.22 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=73.8
Q ss_pred CcHHHHHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 132 LFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 132 ~~~~Q~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+.|..++..++.. +-.++.++-|++||...+.-++..... .+.++.+|+|+..-+....+...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~------------~Gr~V~vLAp~~~s~~~l~~~~~- 101 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE------------QGREVQIIAADRRSQMNMKQDER- 101 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH------------TTCCEEEECSTTHHHHHHSCTTT-
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh------------cCeEEEEEcCchHHHHHHHhhcC-
Confidence 457799999998744 457789999999998865555444433 23359999999777665433221
Q ss_pred hhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhhhcCcHHHHHHHHHhc
Q 007044 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (620)
Q Consensus 210 ~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~ 289 (620)
+.-. ++ |- ..+......|..=+++|||||-.|. ..++..++...
T Consensus 102 ------l~~~--------------------t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A 145 (189)
T 2l8b_A 102 ------LSGE--------------------LI--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGA 145 (189)
T ss_dssp ------CSSC--------------------SS--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHH
T ss_pred ------cCcc--------------------ee--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHH
Confidence 1100 00 10 1222233334455689999999886 45566666655
Q ss_pred cccCCceEEeec
Q 007044 290 EDANKVQTLLFS 301 (620)
Q Consensus 290 ~~~~~~q~ll~S 301 (620)
... +.|+||+-
T Consensus 146 ~~~-naqvvll~ 156 (189)
T 2l8b_A 146 ARH-NVQVLITD 156 (189)
T ss_dssp HHT-TCCEEEEE
T ss_pred Hhc-CCEEEEeC
Confidence 443 46777763
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.08 E-value=2.4 Score=42.00 Aligned_cols=18 Identities=28% Similarity=0.124 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999754
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.91 E-value=2.5 Score=41.53 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=27.1
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
.|..|+++--.+..++.|...=- . -....+++.||+|+|||...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~-~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVE-R------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTT-T------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHh-C------------CCCCeEEEECcCCcCHHHHH
Confidence 45556666556666665554311 0 01235999999999999753
No 163
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.33 E-value=1.3 Score=39.64 Aligned_cols=71 Identities=8% Similarity=0.159 Sum_probs=53.2
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++..+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGR-GMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCST-TCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhc-CcchhhCCE
Confidence 4999999999999999988764 57889999998766554333 24689999993 2222 567888888
Q ss_pred EEecc
Q 007044 265 RVLDE 269 (620)
Q Consensus 265 lVlDE 269 (620)
||.-.
T Consensus 103 Vi~~d 107 (172)
T 1t5i_A 103 AFNYD 107 (172)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 87643
No 164
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=88.08 E-value=1.4 Score=39.97 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=43.5
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++..+++
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldi~~~~~ 117 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISNVKH 117 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBSE
T ss_pred eEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhc-CCCcccCCE
Confidence 4999999999999999888764 57889999987654433222 24688999993 2233 467888888
Q ss_pred EEe
Q 007044 265 RVL 267 (620)
Q Consensus 265 lVl 267 (620)
||.
T Consensus 118 VI~ 120 (185)
T 2jgn_A 118 VIN 120 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 165
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.93 E-value=0.44 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.0
Q ss_pred cCCcEEEECCCCChhhHHhHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~l 165 (620)
.|.-+++.|++|+|||.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 567789999999999975433
No 166
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.84 E-value=0.71 Score=43.88 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=27.7
Q ss_pred CCccEEEeccchhhhh-----cCcHHHHHHHHHhccccCCceEEeecCCC
Q 007044 260 SSLKFRVLDEADEMLR-----MGFVEDVELILGKVEDANKVQTLLFSATL 304 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~-----~~f~~~l~~il~~~~~~~~~q~ll~SATl 304 (620)
.+.+++|+||.-.+++ ......+..++..+... . .+++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g-~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-G-VTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-C-CEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-C-CeEEEEECC
Confidence 4568899999998886 44555577777666442 2 345554443
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.81 E-value=1.3 Score=46.74 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=18.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILES 170 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~ 170 (620)
.|.-+++.|++|+|||...+..+.+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999996544333333
No 168
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.41 E-value=1.1 Score=44.24 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.9
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999753
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.93 E-value=1.3 Score=47.06 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.5
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||+..
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999854
No 170
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.90 E-value=2.3 Score=43.65 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.1
Q ss_pred CcEEE--ECCCCChhhHHh
Q 007044 147 SDLVG--RARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~--~a~TGsGKTla~ 163 (620)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45888 899999999754
No 171
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.63 E-value=5.3 Score=41.13 Aligned_cols=24 Identities=17% Similarity=-0.068 Sum_probs=17.3
Q ss_pred CCcEEEECCCCChhhHHhHHHHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILE 169 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~ 169 (620)
|.-+++.||+|+|||......++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 456889999999999754433333
No 172
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=86.03 E-value=9.5 Score=42.11 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=58.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL---K-KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+|+.-|..+++.+... ++.+..++|+.+.......+ . ...+|+|||. .+. ..+++.+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~-~GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR-EGLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS-TTCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh-CCcccCCCC
Confidence 46999999999999999888764 57788888887665544332 2 4589999994 333 457889999
Q ss_pred EEEeccchhh
Q 007044 264 FRVLDEADEM 273 (620)
Q Consensus 264 ~lVlDEah~~ 273 (620)
+||+-++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999998854
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.00 E-value=0.54 Score=47.40 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=18.6
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
.|.=+++.|++|+|||...+-.+.+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456689999999999964443333333
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.74 E-value=3.8 Score=44.79 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHHcCCcEEEECCCCChhhHHh
Q 007044 142 MVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 142 ~il~g~dvi~~a~TGsGKTla~ 163 (620)
.+..|..+++.||+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4557899999999999999743
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.73 E-value=0.57 Score=40.71 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=17.2
Q ss_pred HcCCcEEEECCCCChhhHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~ 163 (620)
..+.++++.|++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46688999999999999854
No 176
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.51 E-value=0.52 Score=40.89 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=17.0
Q ss_pred HHcCCcEEEECCCCChhhHH
Q 007044 143 VLDGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla 162 (620)
...+..+++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34678899999999999974
No 177
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.76 E-value=3.2 Score=40.28 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=19.3
Q ss_pred HHcCCcEEEECCCCChhhHHhHHHH
Q 007044 143 VLDGSDLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~~lpi 167 (620)
+..|.-+++.|++|+|||......+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567889999999999997544433
No 178
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.43 E-value=21 Score=35.25 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCccCCCccEEEeccchhhhh---cCcHHHHHHHHHhc
Q 007044 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLR---MGFVEDVELILGKV 289 (620)
Q Consensus 245 p~rl~~~l~~~~~~l~~l~~lVlDEah~~l~---~~f~~~l~~il~~~ 289 (620)
...+++.+....- .--+|||||+|.+.. ..+...+..+....
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 4456665543211 234799999999864 35666666666543
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.30 E-value=4.8 Score=37.72 Aligned_cols=24 Identities=21% Similarity=-0.035 Sum_probs=18.3
Q ss_pred cCCcEEEECCCCChhhHHhHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil 168 (620)
.|.-+++.||+|+|||......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457799999999999975544433
No 180
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.15 E-value=1.6 Score=45.90 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=54.0
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg 224 (620)
.|.-+++.|++|+|||...+-.+.+...... ..+++++.- .-..|+...+.......+..- ...|.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~-l~~g~ 264 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG------------VGVGIYSLE-MPAAQLTLRMMCSEARIDMNR-VRLGQ 264 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------CCEEEEESS-SCHHHHHHHHHHHHTTCCTTT-CCGGG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------CeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhCCC
Confidence 4566899999999999644433333333211 127777642 223344444322111111100 00122
Q ss_pred cchHHHH------HHhcCCCcEEEe-----ChHHHHHHHhcCCccCCCccEEEeccchhhhh
Q 007044 225 APYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (620)
Q Consensus 225 ~~~~~~~------~~l~~~~~IlV~-----Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l~ 275 (620)
.+...+. ..+. ...+.+- |+..+...+.+- ..-..+++||+|..+.|..
T Consensus 265 l~~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l-~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 265 LTDRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRL-VSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp CCHHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHH-HHHSCCCEEEEECGGGCBC
T ss_pred CCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEcChhhcCC
Confidence 2222211 1122 2345553 344554443321 0012578999999998864
No 181
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=83.57 E-value=5.3 Score=39.37 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=53.0
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+|+.-+..+++.+.. .++.+..++|+.+...+...+ ....+|+|+| +.+.+ .+++..+++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-CccccceeE
Confidence 399999999999988888765 368899999998876655444 2468999999 33443 567889998
Q ss_pred EEe
Q 007044 265 RVL 267 (620)
Q Consensus 265 lVl 267 (620)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.21 E-value=3 Score=41.60 Aligned_cols=24 Identities=17% Similarity=-0.078 Sum_probs=17.8
Q ss_pred cCCcEEEECCCCChhhHHhHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil 168 (620)
.|.-+++.|++|+|||......+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 356799999999999975444333
No 183
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.10 E-value=2.2 Score=42.47 Aligned_cols=50 Identities=16% Similarity=-0.054 Sum_probs=29.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
.|.-+++.|++|+|||...+-.+.+....+ ..+++++.- +-..|+...+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND-------------DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------CEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEECC-CCHHHHHHHHH
Confidence 456799999999999964443333433322 237777633 33444444443
No 184
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=83.05 E-value=10 Score=40.80 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.++||.|+|+.-|..++..+..... .++.+..++|+.+.......+ ....+|+|||. .+.+ .+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc-CCCcccC
Confidence 34699999999999999999987643 367889999998876554433 24689999994 3443 5788889
Q ss_pred cEEEecc
Q 007044 263 KFRVLDE 269 (620)
Q Consensus 263 ~~lVlDE 269 (620)
++||.-.
T Consensus 412 ~~VI~~~ 418 (563)
T 3i5x_A 412 HEVLQIG 418 (563)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 9887543
No 185
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=82.85 E-value=2.6 Score=41.73 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChhhHHhHH
Q 007044 146 GSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~l 165 (620)
++.+++.||+|+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999976543
No 186
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.80 E-value=4.8 Score=41.24 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCcccC
Confidence 456999999999999999988764 57889999998866544333 24689999995 3343 5688889
Q ss_pred cEEEe
Q 007044 263 KFRVL 267 (620)
Q Consensus 263 ~~lVl 267 (620)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98875
No 187
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.73 E-value=1.6 Score=51.79 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=67.3
Q ss_pred CCchhhhhhH-HHHHHhcCCCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEE
Q 007044 344 CSSSARSQVI-PDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (620)
Q Consensus 344 ~~~~~~~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLv 414 (620)
.....|..+. ..++.....+.+++|.|+|..-+.+.+..+. .+..+++..+..++...+..+..|..+|+|
T Consensus 632 ~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV 711 (1151)
T 2eyq_A 632 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 711 (1151)
T ss_dssp CCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3344554332 2333334467899999999988877766554 456688889999999999999999999999
Q ss_pred ec-ccccccCCCCCccEEEE
Q 007044 415 AT-NVAARGLDINDVQLIIQ 433 (620)
Q Consensus 415 aT-dv~~rGlDi~~v~~VI~ 433 (620)
+| ..+...+.+.++.+||.
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 99 55566788889988885
No 188
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=82.07 E-value=16 Score=40.34 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=57.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH---hc-CCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---LK-KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~---l~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+|+.-|..+++.+... ++.+..++|+.+....... +. ...+|+|||. .+. ..+++..++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~-~GlDip~v~ 509 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR-EGLDIPEVS 509 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC-TTCCCTTEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh-cCccCCCCC
Confidence 36999999999999999888764 5778888888766554433 22 4589999992 333 356889999
Q ss_pred EEEeccchhh
Q 007044 264 FRVLDEADEM 273 (620)
Q Consensus 264 ~lVlDEah~~ 273 (620)
+||+=+++..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9998888743
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.81 E-value=1.7 Score=53.74 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCCccEEEEcCCCCCHHH--HHHHhcccccCCCccEEEEEeCCCchHHHHHHHHhCCCceeeCCCC
Q 007044 425 INDVQLIIQCEPPRDVEA--YIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQ 488 (620)
Q Consensus 425 i~~v~~VI~~d~P~s~~~--yiqr~GRtgR~g~~G~~i~l~~~~~~~~~~i~~~~~~~~~~~~~p~ 488 (620)
+|.=++|=.|++..|-.+ -+|.+--+=..| |.|. |++.+...-..+.+.+|+.++.+-+.+
T Consensus 1772 ~p~g~~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~-~~d~~~~~~~~~~~~~g~~~~~~~~~~ 1834 (2050)
T 3cmu_A 1772 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCA-FIDAEHALDPIYARKLGVDIDNLLCSQ 1834 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEE-EECTTSCCCHHHHHHTTCCTTTCEEEC
T ss_pred CcCCcEEEEECCCCcCHHHHHHHHHHHHhhcC--CEEE-EEcCccccCHHHHHHcCCCHHHeEEec
Confidence 455677778888776433 356664443333 4444 455552223345667899888765433
No 190
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.37 E-value=5.3 Score=44.97 Aligned_cols=16 Identities=31% Similarity=0.239 Sum_probs=14.2
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999754
No 191
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=80.40 E-value=5 Score=40.07 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=53.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+.. .+++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccC
Confidence 345899999999999999988764 57888999998766544333 24678999993 3333 4678888
Q ss_pred cEEEec
Q 007044 263 KFRVLD 268 (620)
Q Consensus 263 ~~lVlD 268 (620)
++||.-
T Consensus 308 ~~Vi~~ 313 (367)
T 1hv8_A 308 NCVINY 313 (367)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888764
No 192
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.39 E-value=5.1 Score=40.87 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=54.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+++.-|..+++.+... ++.+..++|+.+...+...+ ....+|+|+|. .+.+ .+++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR-GIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS-SCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc-CCCccCCC
Confidence 47999999999999999998775 57788999998776654433 24588999994 3333 57889999
Q ss_pred EEEe
Q 007044 264 FRVL 267 (620)
Q Consensus 264 ~lVl 267 (620)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 193
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=80.07 E-value=2 Score=44.38 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=61.0
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEeccccc----ccCC
Q 007044 356 IIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA----RGLD 424 (620)
Q Consensus 356 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~----rGlD 424 (620)
++.....+.++||.++++.-+.+++..+. .+..+||+.+..+|...+..+..|..+|+|+|+-.- .-++
T Consensus 57 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~ 136 (414)
T 3oiy_A 57 ALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLS 136 (414)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHT
T ss_pred HHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhc
Confidence 33434567899999999998888776655 456789999999998899999999999999996322 1256
Q ss_pred CCCccEEEEc
Q 007044 425 INDVQLIIQC 434 (620)
Q Consensus 425 i~~v~~VI~~ 434 (620)
...+++||.=
T Consensus 137 ~~~~~~iViD 146 (414)
T 3oiy_A 137 QKRFDFVFVD 146 (414)
T ss_dssp TCCCSEEEES
T ss_pred cccccEEEEe
Confidence 6788888853
No 194
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.00 E-value=1.8 Score=40.82 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=30.4
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~ 208 (620)
.|.-+++.|++|+|||......+...+..+. .++++.-. +...++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-------------~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-------------PGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC-------------CEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEEcc-CCHHHHHHHHH
Confidence 4677899999999999764444444343321 26777643 33455555444
No 195
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.92 E-value=15 Score=39.67 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=57.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+|+.-|..+++.+..... .++.+..++|+.+.......+ ....+|+|||. .+.+ .+++.+++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~-GiDip~v~ 361 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPNVH 361 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTTCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc-CCCcccCC
Confidence 4699999999999999999987643 367889999998776554333 24689999994 3443 57888999
Q ss_pred EEEecc
Q 007044 264 FRVLDE 269 (620)
Q Consensus 264 ~lVlDE 269 (620)
+||.-.
T Consensus 362 ~VI~~~ 367 (579)
T 3sqw_A 362 EVLQIG 367 (579)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 988654
No 196
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=79.82 E-value=1.8 Score=51.02 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=62.2
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEeccccc----ccCC
Q 007044 356 IIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA----RGLD 424 (620)
Q Consensus 356 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~~----rGlD 424 (620)
++.....+.++||.++|+.-+.+++..+. .+..+||+++..+|...++.+..|..+|+|+|.-.- .-++
T Consensus 114 il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~ 193 (1104)
T 4ddu_A 114 ALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLS 193 (1104)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHH
T ss_pred HHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhc
Confidence 34444567899999999999998887776 356789999999999999999999999999995321 1256
Q ss_pred CCCccEEEEc
Q 007044 425 INDVQLIIQC 434 (620)
Q Consensus 425 i~~v~~VI~~ 434 (620)
+.++++||.=
T Consensus 194 ~~~l~~lViD 203 (1104)
T 4ddu_A 194 QKRFDFVFVD 203 (1104)
T ss_dssp TSCCSEEEES
T ss_pred ccCcCEEEEe
Confidence 6788988863
No 197
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.68 E-value=1.4 Score=46.16 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=30.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~ 201 (620)
...++++.|+||||||... .+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~------------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR------------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT------------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC------------CCcEEEEeCCCchhH
Confidence 4578999999999999875 3333333321 224889999988864
No 198
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.09 E-value=7 Score=38.34 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=15.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.++-+.+.+++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566778899999999754
No 199
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.21 E-value=7 Score=39.44 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
..++||.|+++.-|..+++.+... ++.+..++|+.+...+...+ ....+|+|+|. .+. ..+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA-RGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-cCCCcccC
Confidence 457999999999999999988764 57788999998766554333 24578999994 333 35789999
Q ss_pred cEEEeccch
Q 007044 263 KFRVLDEAD 271 (620)
Q Consensus 263 ~~lVlDEah 271 (620)
++||.-...
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 999875544
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=78.13 E-value=4.4 Score=40.53 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=33.6
Q ss_pred ccEEEeccchhhh-hcCcHHHHHHHHHhccccCCceEEeecCCCChHHHHHHHHhc
Q 007044 262 LKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (620)
Q Consensus 262 l~~lVlDEah~~l-~~~f~~~l~~il~~~~~~~~~q~ll~SATl~~~~~~~~~~~~ 316 (620)
.+++++|.+-++- +......+..+...+.. ...++++.+|....+...++.|.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~--de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKP--NLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCC--SEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcC--CCCEEEEecHHHHHHHHHHHHHH
Confidence 4567788776542 23345556655555543 45677888888877777776665
No 201
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=77.66 E-value=6.7 Score=39.67 Aligned_cols=73 Identities=7% Similarity=0.122 Sum_probs=54.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++..++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~~~~ 320 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERVN 320 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS-SCBCCTTEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh-cCCCcccCC
Confidence 46999999999999999988764 57788999998765544333 24689999993 333 356888999
Q ss_pred EEEeccc
Q 007044 264 FRVLDEA 270 (620)
Q Consensus 264 ~lVlDEa 270 (620)
+||.-..
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9887543
No 202
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=77.53 E-value=1.4 Score=44.59 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..+++|.| ++..|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556678876 778899999999875
No 203
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=77.14 E-value=6.6 Score=42.00 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=52.7
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+|+.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.++++
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~-~GiD~p~v~~ 307 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFG-MGINKPNVRF 307 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSC-TTTCCTTCCE
T ss_pred cEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhh-CCCCccCccE
Confidence 4899999999999999998764 57889999998865543322 34689999995 222 3567888998
Q ss_pred EEe
Q 007044 265 RVL 267 (620)
Q Consensus 265 lVl 267 (620)
||.
T Consensus 308 VI~ 310 (523)
T 1oyw_A 308 VVH 310 (523)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 204
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=77.01 E-value=6.9 Score=42.59 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.++||.|+|+.-+.++++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~-~GID~p~V 336 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFG-MGIDKPDV 336 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSC-TTCCCSCE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhh-cCCCcccc
Confidence 346999999999999999998764 57899999998766554333 34689999993 222 35678889
Q ss_pred cEEEe
Q 007044 263 KFRVL 267 (620)
Q Consensus 263 ~~lVl 267 (620)
++||.
T Consensus 337 ~~VI~ 341 (591)
T 2v1x_A 337 RFVIH 341 (591)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 98884
No 205
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.84 E-value=4.6 Score=42.29 Aligned_cols=28 Identities=18% Similarity=0.011 Sum_probs=19.6
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|.=+++.|++|+|||...+-.+.+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 4566999999999999654444444443
No 206
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.72 E-value=8.2 Score=40.09 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=53.1
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
+||.|+|+.-|..+++.+... ++.+..++|+.+.......+ ....+|+|||. .+.+ .+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r-GlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR-GLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS-SCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC-CCCcccCCEE
Confidence 999999999999999888764 57889999998766554433 24689999995 3343 5788999988
Q ss_pred Ee
Q 007044 266 VL 267 (620)
Q Consensus 266 Vl 267 (620)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 207
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.50 E-value=2 Score=45.84 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=27.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEECCCCChhhHH
Q 007044 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-il~g~dvi~~a~TGsGKTla 162 (620)
...|.+.|. +++.+..-+.. +..|..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556663 34445555544 45788899999999999974
No 208
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=76.45 E-value=1.8 Score=43.28 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHhH
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~~ 164 (620)
.+..++.|.+ ++..|+||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 3445678876 7789999999998753
No 209
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=75.95 E-value=1.7 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=18.9
Q ss_pred HHHHHcCCc--EEEECCCCChhhHHh
Q 007044 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 140 i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
+..++.|.+ ++..|+||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 444567876 678899999999975
No 210
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.75 E-value=8.8 Score=39.18 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=53.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+.+ .+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR-GLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS-SCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC-cCCcccCC
Confidence 36999999999999999888764 57788899998766544333 24688999994 3333 57888999
Q ss_pred EEEe
Q 007044 264 FRVL 267 (620)
Q Consensus 264 ~lVl 267 (620)
+||.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 211
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=75.71 E-value=5.1 Score=38.62 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHHcCC-----cEEEECCCCChhhHHhH
Q 007044 118 VPLREKLKSKGIESLFPIQAMT-FDMVLDGS-----DLVGRARTGQGKTLAFV 164 (620)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~-i~~il~g~-----dvi~~a~TGsGKTla~~ 164 (620)
.++.+.|+-.|+. |++... +..++.++ .+++.||+|||||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3788888888885 666433 45566553 49999999999998654
No 212
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=75.70 E-value=8.8 Score=38.99 Aligned_cols=71 Identities=6% Similarity=0.125 Sum_probs=53.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ ....+|+|+|. .+.. .+++..++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTR-GIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSS-SCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-CCCccCCC
Confidence 47999999999999999988775 47788899998766544333 24579999993 3333 56888899
Q ss_pred EEEec
Q 007044 264 FRVLD 268 (620)
Q Consensus 264 ~lVlD 268 (620)
+||.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88853
No 213
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=77.35 E-value=0.58 Score=41.92 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=48.8
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeChHHHHHHHhcCCccCCCccE
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~ 264 (620)
++||.|+++.-+..+++.+... ++.+..++|+.+.......+. ...+|+|+|. .+.+ .+++..+++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gid~~~~~~ 101 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR-GIDIPDVSH 101 (170)
Confidence 5899999999999998888654 577888888876554433332 3578999992 2222 456777777
Q ss_pred EEe
Q 007044 265 RVL 267 (620)
Q Consensus 265 lVl 267 (620)
||.
T Consensus 102 Vi~ 104 (170)
T 2yjt_D 102 VFN 104 (170)
Confidence 765
No 214
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.37 E-value=6.1 Score=48.95 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=33.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~ 204 (620)
.|..+++.+++|||||......+.+.+..+.. ++++. ..++..++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~-------------~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------------CAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCC-------------EEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCe-------------EEEEE-ccccHHHHH
Confidence 56899999999999998877777777765432 77775 445555555
No 215
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=74.97 E-value=2 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=19.4
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3345667876 778999999999875
No 216
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.96 E-value=2.1 Score=44.10 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=21.0
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHhH
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~~ 164 (620)
.+..++.|.+ ++..|+||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5666778877 6788999999999763
No 217
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=74.95 E-value=2 Score=43.30 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=18.9
Q ss_pred HHHHHcCCc--EEEECCCCChhhHHh
Q 007044 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 140 i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
+..++.|.+ ++..|+||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345667866 778999999999875
No 218
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.91 E-value=1.8 Score=44.54 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHhH
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~~ 164 (620)
.+..++.|.+ ++..|+||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445667866 7788999999998754
No 219
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.90 E-value=2.1 Score=42.89 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=20.5
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5666778877 778999999999875
No 220
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.78 E-value=0.94 Score=47.24 Aligned_cols=55 Identities=16% Similarity=0.027 Sum_probs=34.4
Q ss_pred CCCCccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 106 EHPNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
.+...|++.+--+..++.|.+.= +..|--++...+ .-.+.+++.||+|||||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 34567888887788777776531 122222222211 12478999999999999753
No 221
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=74.60 E-value=2.1 Score=43.14 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445667876 678899999999875
No 222
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=74.36 E-value=2.1 Score=43.48 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445678876 778899999999865
No 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.21 E-value=3.8 Score=41.47 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999854
No 224
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=74.08 E-value=2 Score=43.70 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=19.3
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445677876 778899999999875
No 225
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.00 E-value=3.6 Score=38.14 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=27.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 129 ~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
+..-+.-|..++..+..|.-+.+.||.|||||+.+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34445557778888888999999999999999853
No 226
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=73.95 E-value=2.1 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=18.8
Q ss_pred HHHHHcCCc--EEEECCCCChhhHHh
Q 007044 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 140 i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
+..++.|.+ ++..|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 344567876 778999999999875
No 227
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.94 E-value=3.9 Score=43.53 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=25.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHH
Q 007044 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 128 g~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla 162 (620)
++..-...=..++-.+..+.++++.||+|+|||..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34333344445556677889999999999999974
No 228
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=73.94 E-value=2.1 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445667876 778899999999875
No 229
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=73.83 E-value=2.1 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455677876 778999999999875
No 230
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.76 E-value=2 Score=43.59 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4445678876 778999999999875
No 231
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=73.73 E-value=2 Score=42.40 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=17.2
Q ss_pred cCCcEEEECCCCChhhHHhHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lp 166 (620)
.++-+++.|++|+|||.....-
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4667889999999999865443
No 232
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=73.71 E-value=2.1 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.| ++..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455678877 678899999999875
No 233
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=73.62 E-value=2.2 Score=43.60 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.1
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHhH
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~~ 164 (620)
.+..++.|.+ ++..|+||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3445677866 7789999999998764
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.61 E-value=9.1 Score=40.42 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=14.4
Q ss_pred CcEEEECCCCChhhHHhH
Q 007044 147 SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (620)
.-+.+.|++|+|||....
T Consensus 294 eVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCcccHHHHHH
Confidence 357799999999998543
No 235
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=73.59 E-value=2.1 Score=43.35 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4455678877 678899999999875
No 236
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.58 E-value=2 Score=43.85 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=19.3
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3444667876 778999999999875
No 237
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=73.44 E-value=14 Score=38.30 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=50.4
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeC--------CcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCC
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGN 256 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g--------g~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~ 256 (620)
++||.++++.-+..+++.+... ++.+..++| +.+...+...+ ....+|+|+|. .+.. .
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~-G 432 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE-G 432 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG-G
T ss_pred eEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc-C
Confidence 5999999999999999988775 578888888 65544433222 24589999993 2222 5
Q ss_pred ccCCCccEEEeccc
Q 007044 257 IDLSSLKFRVLDEA 270 (620)
Q Consensus 257 ~~l~~l~~lVlDEa 270 (620)
+++..+++||+-+.
T Consensus 433 ldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 433 LDVPEVDLVVFYEP 446 (494)
T ss_dssp GGSTTCCEEEESSC
T ss_pred CCchhCCEEEEeCC
Confidence 78888998886543
No 238
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=73.25 E-value=1.9 Score=43.50 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=20.8
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHhH
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~~ 164 (620)
.+..++.|.+ ++..|+||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5566778877 6788999999999763
No 239
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.83 E-value=2.4 Score=43.76 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.1
Q ss_pred HHHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 138 MTFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 138 ~~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
..+..++.|.+ ++..|+||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667788877 678899999999875
No 240
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=72.43 E-value=2 Score=43.42 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=20.3
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHhH
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~~ 164 (620)
.+..++.|.+ ++..|+||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4555677876 7789999999998763
No 241
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=72.29 E-value=2 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.3
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778877 677899999999875
No 242
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.28 E-value=6.2 Score=38.46 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
...+++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 243
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=72.20 E-value=3.2 Score=49.35 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=28.3
Q ss_pred EEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccH
Q 007044 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (620)
Q Consensus 150 i~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~Ptr 197 (620)
+|.|..|||||.+.+--+...+..+. .+.++|+|+|..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~----------~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP----------FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT----------TSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC----------CCCcEEEEecCc
Confidence 68899999999987777766665432 224599999975
No 244
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=71.79 E-value=2.2 Score=43.63 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=18.3
Q ss_pred HHHHcCCc--EEEECCCCChhhHHh
Q 007044 141 DMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 141 ~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
..++.|.+ ++..|+||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567876 778999999999875
No 245
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=71.69 E-value=2.7 Score=43.93 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678876 778899999999875
No 246
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=71.57 E-value=3.7 Score=42.13 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=28.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreL 199 (620)
.+.++++.|+||||||...-.-+.+.... +.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-------------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-------------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-------------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-------------CCEEEEEeCCcCH
Confidence 56789999999999997654444433322 2347888887653
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=71.40 E-value=31 Score=35.66 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHhHH
Q 007044 146 GSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~l 165 (620)
++-+++.+++|+|||.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45577889999999976443
No 248
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.31 E-value=9.5 Score=43.55 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHcC--CcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCC
Q 007044 137 AMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214 (620)
Q Consensus 137 ~~~i~~il~g--~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~ 214 (620)
...+..+..+ .+++++||+|+|||...-..+-.......... ..+..++.+-.
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~------l~~~~~~~l~~------------------- 234 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEG------LKGKRIVSLQM------------------- 234 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTT------STTCEEEEECC-------------------
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchh------hcCCeEEEeeh-------------------
Q ss_pred CceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEeccchhhh---hcCcHHHHHHHHHhccc
Q 007044 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML---RMGFVEDVELILGKVED 291 (620)
Q Consensus 215 ~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah~~l---~~~f~~~l~~il~~~~~ 291 (620)
..+..+....-.+..++...+..-.-. ..-.+|+|||+|.+. ...-..+...++..+-.
T Consensus 235 -----------------~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~ 296 (854)
T 1qvr_A 235 -----------------GSLLAGAKYRGEFEERLKAVIQEVVQS-QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA 296 (854)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTT-CSSEEEEECCC-------------------HHHHH
T ss_pred -----------------HHhhccCccchHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh
Q ss_pred cCCceEEeec
Q 007044 292 ANKVQTLLFS 301 (620)
Q Consensus 292 ~~~~q~ll~S 301 (620)
....++|+.+
T Consensus 297 ~~~i~~I~at 306 (854)
T 1qvr_A 297 RGELRLIGAT 306 (854)
T ss_dssp TTCCCEEEEE
T ss_pred CCCeEEEEec
No 249
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.03 E-value=2.8 Score=40.27 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.3
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999743
No 250
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.81 E-value=2.3 Score=42.47 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHcCCcEEEECCCCChhhHHh
Q 007044 140 FDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 140 i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
...+..+..+++.||+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344556889999999999999743
No 251
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=70.72 E-value=2.6 Score=39.78 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=19.0
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
.|.-+++.|++|+|||...+-.+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356799999999999965443344433
No 252
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=70.57 E-value=20 Score=37.98 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=15.4
Q ss_pred cEEEECCCCChhhHHhHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpi 167 (620)
.+++++++|+|||..+.--+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58889999999997654333
No 253
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.52 E-value=7.3 Score=38.47 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=15.1
Q ss_pred CCcEEEECCCCChhhHHhH
Q 007044 146 GSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~ 164 (620)
++-+++.+++|+|||....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4557899999999997543
No 254
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.52 E-value=1.2 Score=43.89 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHH-HHH-HH-HHcCCcEEEECCCCChhhHHh
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQA-MTF-DM-VLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i-~~-il~g~dvi~~a~TGsGKTla~ 163 (620)
...|++++-...+++.|...-. .|... +.+ .. +..++.+++.||+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4567777666666666654310 11100 001 11 124577999999999999854
No 255
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=70.28 E-value=6.1 Score=41.11 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=46.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
.++||.||++.-+..+++.+... ++++..++|+........-.....+|+|||. .+.. .+++. +.+|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM-GANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT-SCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc-CcccC-CcEE
Confidence 46999999999999999998875 5788889887432221122235689999994 4444 34565 5554
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.65 E-value=2 Score=38.62 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|+-+++.||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999843
No 257
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=69.26 E-value=2.7 Score=42.86 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..++.|.+ ++..|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4555678876 778899999999875
No 258
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=68.50 E-value=15 Score=41.36 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=55.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhh-------cCCCceEEEEeCCcchHHHHHHhcC---------CCcEEEeChHHHHH
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYG-------GAVGLTSCCLYGGAPYHAQEFKLKK---------GIDVVIGTPGRIKD 250 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~-------~~~~~~v~~~~gg~~~~~~~~~l~~---------~~~IlV~Tp~rl~~ 250 (620)
..++||.+|++.-+.++++.+.... ...++.+..++|+.+...+...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 3479999999999999998887522 2357889999999988776654432 458999994
Q ss_pred HHhcCCccCCCccEEEe
Q 007044 251 HIERGNIDLSSLKFRVL 267 (620)
Q Consensus 251 ~l~~~~~~l~~l~~lVl 267 (620)
.+.. .+++.++.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3333 467888888763
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=68.33 E-value=4.1 Score=42.25 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHHH--cCCcEEEECCCCChhhHH
Q 007044 135 IQAMTFDMVL--DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 135 ~Q~~~i~~il--~g~dvi~~a~TGsGKTla 162 (620)
-+...+..++ .|.-+++.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3455555444 345588999999999974
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=68.32 E-value=2.2 Score=41.22 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.3
Q ss_pred HHcCCcEEEECCCCChhhHHh
Q 007044 143 VLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~ 163 (620)
+..|.-+++.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446778999999999999753
No 261
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=68.18 E-value=3 Score=42.40 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=17.5
Q ss_pred HHcCCcEEEECCCCChhhHH
Q 007044 143 VLDGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla 162 (620)
+..|..+++.||||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44789999999999999983
No 262
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=67.92 E-value=3.4 Score=41.87 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.5
Q ss_pred cCCc--EEEECCCCChhhHHhH
Q 007044 145 DGSD--LVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~d--vi~~a~TGsGKTla~~ 164 (620)
.|.+ ++..|+||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 6899999999998753
No 263
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=67.84 E-value=9.8 Score=42.08 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=47.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh-cCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
+.++||.||+++-+..+++.|... ++++..++|... ....... ....+|+|||. .+.+ .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaTd-----v~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSY-DTEYPKCKNGDWDFVITTD-----ISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSH-HHHGGGGGTCCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHH-HHHHHHHHCCCceEEEECc-----hhhc-ceeeC-CcEE
Confidence 457999999999999998888754 678888888532 2222223 24689999993 4444 45677 7776
Q ss_pred E
Q 007044 266 V 266 (620)
Q Consensus 266 V 266 (620)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 264
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=67.74 E-value=6.6 Score=40.98 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=47.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh-cCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
+.++||.||+++-|..+++.+... ++++..++|...... .... ....+|+|||. .+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~-~~~F~~g~~~vLVaT~-----v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFERE-YPTIKQKKPDFILATD-----IAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----STTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHH-HhhhcCCCceEEEECC-----hhhe-eeccC-ceEE
Confidence 347999999999999999998775 578888888543222 2233 34689999993 4444 45777 8887
Q ss_pred E
Q 007044 266 V 266 (620)
Q Consensus 266 V 266 (620)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 265
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.70 E-value=2.4 Score=43.66 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=31.5
Q ss_pred CCCccccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGI---ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
+...|++.+=-...++.|.+.=. ..|--++... +.-.+.+++.||+|||||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 34568888766666666655411 1111111111 112378999999999999853
No 266
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=67.38 E-value=17 Score=38.31 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=51.5
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
.+|++.+..-+..+++.+... +.++..++|+.+.......+ ....+|+|||+..+-. .+++.++++|
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~v 420 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHHV 420 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEEE
T ss_pred eEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcEE
Confidence 556666666666676666543 34788899988765543322 3467999999877654 6789999999
Q ss_pred Eeccch
Q 007044 266 VLDEAD 271 (620)
Q Consensus 266 VlDEah 271 (620)
|+..+.
T Consensus 421 i~~~~~ 426 (510)
T 2oca_A 421 VLAHGV 426 (510)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 988776
No 267
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=67.34 E-value=34 Score=30.95 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=49.8
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCc-eEEEEeC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL-TSCCLYG 223 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~-~v~~~~g 223 (620)
-|..+-+.+..|-|=|+.+.+|+...-...............+.++||+-........+...+..+ ++ .+...
T Consensus 19 hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~~a-- 92 (206)
T 3mm4_A 19 HMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVEQC-- 92 (206)
T ss_dssp ------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEEEE--
T ss_pred cCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeeeee--
Confidence 456677889999999999999975432221111111112234568899988877777777766654 23 33222
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHhcC--------CccCCCccEEEeccchhhhhcCcHHHHHHHHHhccc-cCC
Q 007044 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED-ANK 294 (620)
Q Consensus 224 g~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~--------~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~-~~~ 294 (620)
.+....++.+... ...-..+++||+|= .|-++.-.+.+..|...... .+.
T Consensus 93 -------------------~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~~ 151 (206)
T 3mm4_A 93 -------------------DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGVR 151 (206)
T ss_dssp -------------------SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTCC
T ss_pred -------------------CCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCCC
Confidence 2333344444321 11223467888882 23333323334444332110 125
Q ss_pred ceEEeecCCC
Q 007044 295 VQTLLFSATL 304 (620)
Q Consensus 295 ~q~ll~SATl 304 (620)
..+|++|+..
T Consensus 152 ~piI~ls~~~ 161 (206)
T 3mm4_A 152 TPIIAVSGHD 161 (206)
T ss_dssp CCEEEEESSC
T ss_pred CcEEEEECCC
Confidence 6899999875
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=66.88 E-value=15 Score=36.98 Aligned_cols=21 Identities=19% Similarity=-0.097 Sum_probs=16.3
Q ss_pred CCcEEEECCCCChhhHHhHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLP 166 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lp 166 (620)
|.-+.+.||+|||||......
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999754433
No 269
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=66.86 E-value=2.7 Score=38.46 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=16.5
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.++.+++.|++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999854
No 270
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.46 E-value=2.1 Score=44.73 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--HcCCcEEEECCCCChhhHHh
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDMV--LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~i--l~g~dvi~~a~TGsGKTla~ 163 (620)
...|++.+--...++.|.+.=. .|... +.+..+ .--+.+|+.||+|||||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 3567777766777777665421 11111 111111 13478999999999999743
No 271
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.68 E-value=8 Score=35.74 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CcEEEECCCCChhhHHhHHHHHHHH
Q 007044 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~il~g----~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
..+.+.|+-.|+ .+... ...+..++.+ +.+++.||.|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 356666665554 34444 4455555544 35999999999999644 3444443
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.19 E-value=2.9 Score=39.89 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=15.3
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 273
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=65.05 E-value=3.8 Score=37.81 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999854
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=64.98 E-value=3 Score=37.43 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=15.5
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999854
No 275
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=64.71 E-value=2.8 Score=41.02 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=29.5
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HcCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDMV-LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~i-l~g~dvi~~a~TGsGKTla~ 163 (620)
.+..|+++.-....++.|...-. .|... +.+..+ ..++.+++.||+|+|||+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34567777656666666554210 00000 000001 13578999999999999754
No 276
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=64.47 E-value=3.2 Score=41.61 Aligned_cols=18 Identities=33% Similarity=0.200 Sum_probs=14.7
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
++-+++.||||||||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999743
No 277
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.21 E-value=2.1 Score=44.63 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=29.6
Q ss_pred CCccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 108 PNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
...|++.+--...++.|.+.= +..|--++... +.-.+.+++.||+|||||+.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 456777775566666554431 11111111111 112378999999999999853
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=64.06 E-value=3.1 Score=37.03 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
++-++++|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 279
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=63.99 E-value=4 Score=37.31 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|+-+++.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999853
No 280
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=63.98 E-value=3.1 Score=41.18 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.3
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999643
No 281
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.96 E-value=4.3 Score=40.02 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.3
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.|+||+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999753
No 282
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.86 E-value=3.4 Score=41.38 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.9
Q ss_pred HHcCCcEEEECCCCChhhH
Q 007044 143 VLDGSDLVGRARTGQGKTL 161 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTl 161 (620)
+..|..+++.||||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3478999999999999998
No 283
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=63.83 E-value=2.2 Score=38.16 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=17.2
Q ss_pred HcCCcEEEECCCCChhhHHhH
Q 007044 144 LDGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~~ 164 (620)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998543
No 284
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=63.78 E-value=2.9 Score=38.43 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=17.5
Q ss_pred HHcCCcEEEECCCCChhhHHh
Q 007044 143 VLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~ 163 (620)
+..|+-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446788999999999999743
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=63.72 E-value=2.9 Score=41.43 Aligned_cols=17 Identities=24% Similarity=0.014 Sum_probs=13.8
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+-+++.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 44788999999999643
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=63.44 E-value=3.1 Score=36.54 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.6
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 287
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.23 E-value=3.7 Score=37.73 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.9
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|+-+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356799999999999853
No 288
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=63.17 E-value=15 Score=38.28 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=47.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh-cCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
.++||.|||+.-|.++++.+... ++.+..++|...... .... ....+|+|||. .+.+ .+++.. .+||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~-~~~f~~g~~~vLVaT~-----v~~~-GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTE-YPKTKLTDWDFVVTTD-----ISEM-GANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHH-GGGGGSSCCSEEEECG-----GGGS-SCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHH-HHhhccCCceEEEECC-----HHHh-CcCCCC-CEEE
Confidence 36999999999999999888654 577888888765322 2222 34689999993 4444 456777 6665
No 289
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.89 E-value=2.4 Score=44.07 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=29.8
Q ss_pred CCccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 108 PNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
...|++.+=-....+.|.+.= +..|--++... +.-.+-+++.||+|||||+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 456777775666666554421 11111111111 112367999999999999753
No 290
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=62.89 E-value=3.2 Score=37.91 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.6
Q ss_pred HcCCcEEEECCCCChhhHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~ 163 (620)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999854
No 291
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=62.50 E-value=3.2 Score=39.72 Aligned_cols=16 Identities=25% Similarity=-0.097 Sum_probs=13.3
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-++++|+||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999743
No 292
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.15 E-value=3.3 Score=39.49 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=28.4
Q ss_pred CCccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 108 PNAVSRFRISVPLREKLKSKG--IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
+..|+++.-.+.+.+.|...- +..+..++... ....+.+++.||+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 456777776666666554320 00010000000 012356999999999999754
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.71 E-value=3.8 Score=37.33 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999843
No 294
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=61.49 E-value=3.2 Score=41.98 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357999999999999754
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=60.91 E-value=4.1 Score=36.73 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.1
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999843
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=60.68 E-value=4.3 Score=35.82 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.3
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999843
No 297
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=60.55 E-value=3.1 Score=37.45 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.1
Q ss_pred HcCCcEEEECCCCChhhHH
Q 007044 144 LDGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla 162 (620)
..|.-+++.|++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567789999999999984
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=60.45 E-value=4.1 Score=36.66 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999854
No 299
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=60.45 E-value=11 Score=35.27 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=47.5
Q ss_pred CCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEecc-----ccc-ccCCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAA-RGLDIND 427 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd-----v~~-rGlDi~~ 427 (620)
.+.++||.++|+.-+.++...+. .+..++|+.+...+...+. . ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35679999999998888876665 3456788877666554443 2 468999995 222 3457788
Q ss_pred ccEEEE
Q 007044 428 VQLIIQ 433 (620)
Q Consensus 428 v~~VI~ 433 (620)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888775
No 300
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=60.33 E-value=13 Score=37.55 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=15.6
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
...+++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999754
No 301
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=60.26 E-value=16 Score=35.84 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=48.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
+.++||.+++++-+..+++.+. .+..++|+.+.......+ ....+|+|+|. .+.. .+++..+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 285 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASR-GLDIPLV 285 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHT-TCCCCCB
T ss_pred CCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cccc-CCCccCC
Confidence 3459999999999888766553 467788887765554333 24689999994 3333 5788899
Q ss_pred cEEEecc
Q 007044 263 KFRVLDE 269 (620)
Q Consensus 263 ~~lVlDE 269 (620)
++||.-.
T Consensus 286 ~~Vi~~~ 292 (337)
T 2z0m_A 286 EKVINFD 292 (337)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 9888643
No 302
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=60.16 E-value=3.7 Score=40.88 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=29.3
Q ss_pred CCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCcEEEECCCCChhhHHh
Q 007044 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-----DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il-----~g~dvi~~a~TGsGKTla~ 163 (620)
...|++++--..+++.|.+.-. .|.+ .|.+. ..+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3467777766666666654210 0100 01121 2367999999999999754
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=60.15 E-value=4 Score=41.65 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.6
Q ss_pred HcCCcEEEECCCCChhhHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~ 163 (620)
..|.-+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999753
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=60.09 E-value=4.1 Score=36.49 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.3
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.-+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999854
No 305
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.00 E-value=9.3 Score=38.59 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=20.3
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|.-+++.|++|+|||...+..+.+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677999999999999765544444443
No 306
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=59.97 E-value=23 Score=39.02 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=54.6
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchH---HHHHHhc---CCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH---AQEFKLK---KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 190 ~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~---~~~~~l~---~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.+|+++|+.-+.++++.+... ++.+..++|+.+.. .+..... ...+|+|||. .+.+ .+++ +++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~-GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM-GLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS-SCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC-CcCc-Ccc
Confidence 477799999899888888763 57889999999876 3444444 3479999995 4444 5678 899
Q ss_pred EEEeccchhh
Q 007044 264 FRVLDEADEM 273 (620)
Q Consensus 264 ~lVlDEah~~ 273 (620)
+||.-.....
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998877654
No 307
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.86 E-value=4.2 Score=41.17 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=15.2
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.+.-+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999974
No 308
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=59.84 E-value=22 Score=38.85 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=47.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
..++||.|+|+.-|..+++.|... ++++..++|.........-.....+|+|||. .+.+| +++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~rG-iDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG-ANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGTT-CCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHcC-cccC-ceEEE
Confidence 346999999999999999998875 5778888875322211111234689999994 44544 5664 77764
No 309
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.52 E-value=5.6 Score=36.46 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.8
Q ss_pred HcCCcEEEECCCCChhhHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~ 163 (620)
+.|+-+++.||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36788999999999999843
No 310
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.89 E-value=9.1 Score=38.53 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=20.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|.-+++.|++|+|||...+..+.+...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4577999999999999765444444443
No 311
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=58.87 E-value=3.6 Score=40.31 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.4
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=58.49 E-value=4.3 Score=35.94 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.6
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999854
No 313
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.96 E-value=4.1 Score=36.22 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
.|.-+.+.||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999998544
No 314
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=57.91 E-value=25 Score=37.16 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=45.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeC--------CcchHHHHHH---hc--CCCcEEEeChHHHHHHHhc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFK---LK--KGIDVVIGTPGRIKDHIER 254 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g--------g~~~~~~~~~---l~--~~~~IlV~Tp~rl~~~l~~ 254 (620)
.++||.|+++.-+..+++.+...+...++.+..++| +.+...+... .. ...+|+|||. .+.
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~- 463 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD- 463 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT-
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh-
Confidence 359999999999999999998765433455555554 4444333322 22 3478999993 333
Q ss_pred CCccCCCccEEEe
Q 007044 255 GNIDLSSLKFRVL 267 (620)
Q Consensus 255 ~~~~l~~l~~lVl 267 (620)
..+++..+++||.
T Consensus 464 ~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 464 EGIDIAECNLVIL 476 (555)
T ss_dssp CCEETTSCSEEEE
T ss_pred cCCccccCCEEEE
Confidence 3577888888875
No 315
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=57.85 E-value=4.6 Score=40.81 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999754
No 316
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.81 E-value=11 Score=35.26 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=19.9
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCC
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNG 174 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~ 174 (620)
.+++.++.|+|||...+--+......+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 588999999999987655555444443
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=57.59 E-value=5 Score=36.62 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+++.|+.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 318
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=57.51 E-value=5.4 Score=39.07 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=14.7
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999754
No 319
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=57.37 E-value=18 Score=42.94 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=41.7
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~ 209 (620)
..+|.|.-|||||.+...-++..+...... ..........++|+|+=|+.-|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~-~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGS-AAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSS-SSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcc-cccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 459999999999999888888877642100 0000012234699999999888888777654
No 320
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=57.31 E-value=5 Score=37.46 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.6
Q ss_pred HHcCCcEEEECCCCChhhHHh
Q 007044 143 VLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~ 163 (620)
+-.|.-+++.||+|+|||..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456788999999999999843
No 321
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=57.24 E-value=19 Score=33.90 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=46.6
Q ss_pred CCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEeccc-----cc--ccCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AA--RGLDIN 426 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv-----~~--rGlDi~ 426 (620)
.+.++||.++++.-+.++++.+. .+..++|+.....+...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34679999999998888776654 345677877655543333 246799999952 11 456778
Q ss_pred CccEEEE
Q 007044 427 DVQLIIQ 433 (620)
Q Consensus 427 ~v~~VI~ 433 (620)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888775
No 322
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=57.17 E-value=13 Score=39.49 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=19.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.+.++++.|.||||||.+.-..+...+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999764444433333
No 323
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=57.07 E-value=6.6 Score=36.47 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=16.4
Q ss_pred HcCCcEEEECCCCChhhHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~ 163 (620)
..|+-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999843
No 324
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.04 E-value=4.6 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
++.+++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999754
No 325
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=56.73 E-value=4.7 Score=35.39 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=13.7
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 326
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=56.47 E-value=5.7 Score=39.50 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.7
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999743
No 327
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=56.44 E-value=13 Score=43.39 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=53.9
Q ss_pred cCCCCeEEEEEcccccHHHHHHhcc------------cchhhccccchHHHHHHHHHhhcCCceEEEeccc-ccccCC-C
Q 007044 360 YSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-AARGLD-I 425 (620)
Q Consensus 360 ~~~~~~~iVF~~t~~~~~~l~~~l~------------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv-~~rGlD-i 425 (620)
...+.++||.++|+.-+.+++..+. .+..+||+.+...+....+.++. .+|+|+|+- +..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 3456799999999999888777665 34568999999988888888877 899999962 222222 5
Q ss_pred CCccEEEE
Q 007044 426 NDVQLIIQ 433 (620)
Q Consensus 426 ~~v~~VI~ 433 (620)
..+++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 57888775
No 328
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=56.03 E-value=5.4 Score=36.63 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.7
Q ss_pred HHHcCCcEEEECCCCChhhHHh
Q 007044 142 MVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 142 ~il~g~dvi~~a~TGsGKTla~ 163 (620)
.+..|.-+.+.||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999843
No 329
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=55.99 E-value=15 Score=40.38 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=49.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 186 ~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
...++||.+||+.-+.++++.+... ++.+..++|+.+... ....+.+|+|+|. .+.+| +++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----VaerG-IDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMTG-YTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHHH-CCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHcc-CCCC-CcEE
Confidence 4557999999999999999888753 688999999987653 2235569999994 44443 4454 7776
Q ss_pred E
Q 007044 266 V 266 (620)
Q Consensus 266 V 266 (620)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 330
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=55.58 E-value=7.5 Score=43.43 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=20.7
Q ss_pred HHHHHHcCCc--EEEECCCCChhhHHh
Q 007044 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (620)
Q Consensus 139 ~i~~il~g~d--vi~~a~TGsGKTla~ 163 (620)
.+..+++|.| ++..|+||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677888877 677899999999875
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=55.56 E-value=4 Score=36.51 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+++.|+.|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999854
No 332
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.51 E-value=5 Score=40.54 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=15.7
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||+..
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999754
No 333
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.50 E-value=6 Score=35.91 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.8
Q ss_pred CcEEEECCCCChhhHH
Q 007044 147 SDLVGRARTGQGKTLA 162 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla 162 (620)
+-+|++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 334
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=55.31 E-value=4.7 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
|.-+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556899999999999854
No 335
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=55.25 E-value=11 Score=38.09 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=18.8
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
.|.-+++.|++|+|||...+-.+.+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 456789999999999965443333333
No 336
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=55.11 E-value=5.1 Score=38.05 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=29.9
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~dvi~~a~TGsGKTla~ 163 (620)
....|+++.-.+.....+...-.. .. ....+..+- -.+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 345677776666666655543110 00 011222211 1244999999999999743
No 337
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=54.88 E-value=5.1 Score=40.19 Aligned_cols=16 Identities=31% Similarity=0.086 Sum_probs=13.5
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999743
No 338
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=54.72 E-value=16 Score=33.00 Aligned_cols=68 Identities=25% Similarity=0.243 Sum_probs=45.9
Q ss_pred CCCeEEEEEcccccHHHHHHhcc------cchhhccccchHHHHHHHHHhhcCCceEEEeccc-----cc-ccCCCCCcc
Q 007044 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AA-RGLDINDVQ 429 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv-----~~-rGlDi~~v~ 429 (620)
.+.++||.++++.-+..++..+. .+..++|+.....+...+. ...+|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 45689999999988888777665 3456777776555443332 24689999952 12 346677788
Q ss_pred EEEE
Q 007044 430 LIIQ 433 (620)
Q Consensus 430 ~VI~ 433 (620)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 339
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.71 E-value=9.9 Score=49.33 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHHcCCcEEEECCCCChhhHHhH
Q 007044 116 ISVPLREKLKSKGIESLFPIQ-AMTF---DMVLDGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~il~g~dvi~~a~TGsGKTla~~ 164 (620)
+...+.+.+.+.|+. |.|.+ .+++ ..+...+-+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 455666777888884 55544 3444 334466789999999999999764
No 340
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.99 E-value=5.4 Score=41.28 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=30.2
Q ss_pred CCCccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
....|++.+=-...++.|.+.= +..|--++...+ --.+.+++.||+|||||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3456777765555555554421 112222221111 12377999999999999843
No 341
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=53.91 E-value=3.1 Score=39.92 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999754
No 342
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=53.82 E-value=10 Score=41.94 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=42.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeC--------CcchHHHHHHh---c--CCCcEEEeChHHHHHHHhc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL---K--KGIDVVIGTPGRIKDHIER 254 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g--------g~~~~~~~~~l---~--~~~~IlV~Tp~rl~~~l~~ 254 (620)
.++||.|+++.-+..+++.+...+...++++..++| +.+...+...+ . ...+|+|+|. .+.
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~~- 472 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VAD- 472 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SSC-
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hhh-
Confidence 459999999999999999998765444467777755 55544443322 2 3578999992 333
Q ss_pred CCccCCCccEEEe
Q 007044 255 GNIDLSSLKFRVL 267 (620)
Q Consensus 255 ~~~~l~~l~~lVl 267 (620)
..+++.++++||.
T Consensus 473 ~GiDip~v~~VI~ 485 (696)
T 2ykg_A 473 EGIDIAQCNLVIL 485 (696)
T ss_dssp CC---CCCSEEEE
T ss_pred cCCcCccCCEEEE
Confidence 3578889998885
No 343
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.74 E-value=7.5 Score=43.09 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHh--hcCCCceEEEEeCC--------cchHHHHHHh---c-CCCcEEEeChHHHHHHH
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVY--GGAVGLTSCCLYGG--------APYHAQEFKL---K-KGIDVVIGTPGRIKDHI 252 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~--~~~~~~~v~~~~gg--------~~~~~~~~~l---~-~~~~IlV~Tp~rl~~~l 252 (620)
+.++||.++++..+..+++.+... ....|+.+..++|+ .+...+...+ . ...+|+|||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 346999999999999999988754 22236888899998 6665554433 2 3578999993 33
Q ss_pred hcCCccCCCccEEE
Q 007044 253 ERGNIDLSSLKFRV 266 (620)
Q Consensus 253 ~~~~~~l~~l~~lV 266 (620)
. ..+++.++++||
T Consensus 475 ~-~GIDip~v~~VI 487 (699)
T 4gl2_A 475 E-EGLDIKECNIVI 487 (699)
T ss_dssp C-TTSCCCSCCCCE
T ss_pred c-cCCccccCCEEE
Confidence 3 357888888887
No 344
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=53.66 E-value=8.1 Score=35.43 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=16.1
Q ss_pred cEEEECCCCChhhHHhHHHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPILE 169 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~ 169 (620)
-.++.|+.|||||+....-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999865443333
No 345
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=53.48 E-value=8.7 Score=36.63 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.4
Q ss_pred HcCCcEEEECCCCChhhHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~ 163 (620)
+.|..+++.|++|||||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999854
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.32 E-value=8 Score=35.51 Aligned_cols=30 Identities=10% Similarity=-0.077 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHcCCcEEEECCCCChhhHHh
Q 007044 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 133 ~~~Q~~~i~~il~g~dvi~~a~TGsGKTla~ 163 (620)
++.++.. ..+..|.-+++.|++|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4455554 33456778899999999999754
No 347
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=53.12 E-value=16 Score=34.15 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=39.7
Q ss_pred CCCeEEEEEcccccHHHHHHhccc--------chhhccccchHHHHHHHHHhhcCCceEEEecc-----cccc-cCCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLPG--------ARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAAR-GLDIND 427 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~~--------~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd-----v~~r-GlDi~~ 427 (620)
.+.++||.++++.-+..++..+.. +..++|+... ......+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNV---RNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCch---HHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 456899999999998888777652 2334555432 2334455667789999994 2333 466777
Q ss_pred ccEEEE
Q 007044 428 VQLIIQ 433 (620)
Q Consensus 428 v~~VI~ 433 (620)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 348
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=52.52 E-value=17 Score=39.05 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=20.2
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhC
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTN 173 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~ 173 (620)
..++++.|.||||||.+.-..++..+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3589999999999997655445444433
No 349
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.37 E-value=4.3 Score=40.53 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.3
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
...+++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999753
No 350
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=52.30 E-value=9.3 Score=38.94 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=45.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEeChHHHHHHHhcCCccCCCcc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL---K-KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~~IlV~Tp~rl~~~l~~~~~~l~~l~ 263 (620)
.++||.++++.-+..+++.+.. .++.+..++|+.+...+...+ . ...+|+|+|. .+.. .+++.+++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~v~ 350 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHA----RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLAR-GIDVQQVS 350 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHT----TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC---CCGGGCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHh----cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cccc-CCCccCCC
Confidence 4689999999999999888865 357788899988765544333 2 3578999994 2332 46777888
Q ss_pred EEEe
Q 007044 264 FRVL 267 (620)
Q Consensus 264 ~lVl 267 (620)
+||.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8774
No 351
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=51.74 E-value=6.3 Score=35.89 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.7
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-++++|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999854
No 352
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.73 E-value=6.4 Score=35.36 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=13.9
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-+++.||+|||||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34688999999999854
No 353
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.70 E-value=11 Score=46.14 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=53.4
Q ss_pred CCcEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCc
Q 007044 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~ 225 (620)
|+-+.+.+|.|||||+..+-.+.+....+.. ++++.+--+|.... +++++ +.+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~-------------~~~i~~e~~~~~~~---~~~~G----v~~------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------------CAFIDAEHALDPIY---ARKLG----VDI------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCC-------------EEEECTTSCCCHHH---HHHTT----CCG-------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCe-------------EEEEecCCCCCHHH---HHHcC----CCH-------
Confidence 4779999999999998766555555555433 78888765555543 44443 221
Q ss_pred chHHHHHHhcCCCcEEEeChHHHHHHHhc--CCccCCCccEEEeccchhhhh
Q 007044 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLR 275 (620)
Q Consensus 226 ~~~~~~~~l~~~~~IlV~Tp~rl~~~l~~--~~~~l~~l~~lVlDEah~~l~ 275 (620)
-+++|.-|..--++|.- ..+.-..+++||+|.+..+..
T Consensus 1484 ------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 ------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 12555555433222210 011223467899998887653
No 354
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=51.64 E-value=5.8 Score=40.72 Aligned_cols=16 Identities=31% Similarity=0.248 Sum_probs=13.2
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.||||||||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3688999999999643
No 355
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=51.43 E-value=68 Score=33.97 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCccEEEeccchhhhhcC-----cHHHHHHHHHhccccCCceEEeecCC
Q 007044 259 LSSLKFRVLDEADEMLRMG-----FVEDVELILGKVEDANKVQTLLFSAT 303 (620)
Q Consensus 259 l~~l~~lVlDEah~~l~~~-----f~~~l~~il~~~~~~~~~q~ll~SAT 303 (620)
..+.++||+| -=.-++.. ....+..++..+... ..-+++.|-.
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilvsh~ 416 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFTNTS 416 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEEC
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEEECc
Confidence 3566889999 65566776 666676777666542 3344444443
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=51.19 E-value=6.6 Score=36.79 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.|++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 357
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=51.05 E-value=13 Score=37.42 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=18.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
.|.-+++.||+|+|||... +.++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3567899999999999644 4444333
No 358
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=50.79 E-value=6.2 Score=35.39 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=14.9
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.-+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 359
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=50.61 E-value=22 Score=32.54 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=46.4
Q ss_pred CeEEEEEcccccHHHHHHhcc---------cchhhccccchHHHHHHHHHhhcCCceEEEeccc-c-----cccCCCCCc
Q 007044 364 GRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-A-----ARGLDINDV 428 (620)
Q Consensus 364 ~~~iVF~~t~~~~~~l~~~l~---------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv-~-----~rGlDi~~v 428 (620)
.++||.++++.-+.++++.+. .+..++|+.+...+.. .+..+..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 489999999988877765543 3456788877655543 345567799999952 1 234677788
Q ss_pred cEEEE
Q 007044 429 QLIIQ 433 (620)
Q Consensus 429 ~~VI~ 433 (620)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88775
No 360
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=50.22 E-value=6.4 Score=35.83 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+++.|++|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5677889999999999754
No 361
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=50.20 E-value=11 Score=37.21 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=12.9
Q ss_pred cEEEECCCCChhhHH
Q 007044 148 DLVGRARTGQGKTLA 162 (620)
Q Consensus 148 dvi~~a~TGsGKTla 162 (620)
-+++.|+.|||||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999984
No 362
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=50.01 E-value=6.7 Score=38.30 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.3
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=50.00 E-value=7.2 Score=35.05 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=16.6
Q ss_pred HcCCcEEEECCCCChhhHHh
Q 007044 144 LDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 144 l~g~dvi~~a~TGsGKTla~ 163 (620)
..+.-+++.|++|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999854
No 364
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=49.97 E-value=6.8 Score=40.94 Aligned_cols=54 Identities=20% Similarity=0.090 Sum_probs=30.4
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHH-HH-HHHHcCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAM-TF-DMVLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~-~i-~~il~g~dvi~~a~TGsGKTla~ 163 (620)
.+..|+++.-...+.+.|...-. .|.+.. .+ ......+.+++.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34567877766666666654310 010000 00 00112467999999999999754
No 365
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=49.96 E-value=6.8 Score=37.93 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=26.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHHH--cCCcEEEECCCCChhhHHh
Q 007044 109 NAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDMVL--DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~il--~g~dvi~~a~TGsGKTla~ 163 (620)
..|++++-...+.+.|...-. .|+.. ..+..+- -.+.+++.||+|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 457777766666666654311 12211 1222211 1244999999999999743
No 366
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.93 E-value=6.9 Score=37.79 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=31.0
Q ss_pred CCCccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEECCCCChhhHHh
Q 007044 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~dvi~~a~TGsGKTla~ 163 (620)
.+..|+++.-.+.....+...-.. .. ....+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456688887777777666543110 00 011222211 1244999999999999743
No 367
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.87 E-value=17 Score=46.56 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHHcCCcEEEECCCCChhhHHhHH
Q 007044 116 ISVPLREKLKSKGIESLFPIQ-AMTF---DMVLDGSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~il~g~dvi~~a~TGsGKTla~~l 165 (620)
+...+.+.+.+.|+. +++.+ .+++ ..+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 345566777788874 55554 3333 3345678899999999999997643
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=49.78 E-value=7.5 Score=33.69 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=12.9
Q ss_pred cEEEECCCCChhhHH
Q 007044 148 DLVGRARTGQGKTLA 162 (620)
Q Consensus 148 dvi~~a~TGsGKTla 162 (620)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367899999999975
No 369
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.65 E-value=6.8 Score=41.01 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.7
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..++++||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999754
No 370
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=49.62 E-value=40 Score=37.29 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=52.7
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcC--------------------------------CCceEEEEeCCcchHHHHHHhc-
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGA--------------------------------VGLTSCCLYGGAPYHAQEFKLK- 235 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~--------------------------------~~~~v~~~~gg~~~~~~~~~l~- 235 (620)
++||.+|++.-+..++..+...... ....+..++|+.+...+.....
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 4999999999999999888764321 0134888999988766554332
Q ss_pred ---CCCcEEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 236 ---KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 236 ---~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
....|+|||. .+.. .+++..+.+||-+
T Consensus 334 f~~g~~~vlvaT~-----~l~~-Gidip~~~~VI~~ 363 (715)
T 2va8_A 334 FRQRKIKVIVATP-----TLAA-GVNLPARTVIIGD 363 (715)
T ss_dssp HHTTCSCEEEECG-----GGGG-SSCCCBSEEEECC
T ss_pred HHcCCCeEEEECh-----HHhc-ccCCCceEEEEeC
Confidence 4689999993 3333 5678888886643
No 371
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=48.81 E-value=6.8 Score=35.10 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.9
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999854
No 372
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=48.65 E-value=9.5 Score=38.02 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.8
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999853
No 373
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=48.53 E-value=10 Score=34.77 Aligned_cols=21 Identities=19% Similarity=-0.012 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCChhhHHhHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~l 165 (620)
.|.-+++.|++|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999975443
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=48.52 E-value=11 Score=33.34 Aligned_cols=16 Identities=19% Similarity=-0.054 Sum_probs=13.4
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-.++.|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999843
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=48.48 E-value=8.1 Score=33.83 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.3
Q ss_pred CcEEEECCCCChhhHHhH
Q 007044 147 SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (620)
+++++.|+.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998543
No 376
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.26 E-value=42 Score=30.00 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=19.3
Q ss_pred CcEEEeChHHHHHHHhcCCccCCCccEEEeccch
Q 007044 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (620)
Q Consensus 238 ~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlDEah 271 (620)
.+++-+.+..+...+..- ...++++|+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 556666667776666531 2347889999543
No 377
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=48.20 E-value=7.1 Score=35.81 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355678999999999974
No 378
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=48.08 E-value=7.5 Score=39.43 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=13.8
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-.++.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999865
No 379
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=48.07 E-value=8.7 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=14.3
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+.+++.++.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999754
No 380
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=48.06 E-value=17 Score=33.69 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEeccc-c----cc--cCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-A----AR--GLDIN 426 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv-~----~r--GlDi~ 426 (620)
.+.++||.++++.-+..++..+. .+..++|+.+.......+ +..+|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 45689999999998888776665 345567877655443332 46789999952 1 12 35666
Q ss_pred CccEEEE
Q 007044 427 DVQLIIQ 433 (620)
Q Consensus 427 ~v~~VI~ 433 (620)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777664
No 381
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=48.02 E-value=7.4 Score=36.31 Aligned_cols=19 Identities=37% Similarity=0.289 Sum_probs=12.1
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+.+.||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999743
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.01 E-value=8.8 Score=34.75 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=47.95 E-value=8 Score=34.82 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+.-+++.|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 384
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=47.79 E-value=7.9 Score=35.58 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.1
Q ss_pred cEEEECCCCChhhHHhH
Q 007044 148 DLVGRARTGQGKTLAFV 164 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (620)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998643
No 385
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=47.52 E-value=11 Score=39.70 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=19.0
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
...++++.||+|+|||...- .+...+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~-~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE-GLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH-HHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH-HHHHHHH
Confidence 34689999999999997543 3334443
No 386
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=47.26 E-value=14 Score=34.09 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=41.9
Q ss_pred CCCeEEEEEcccccHHHHHHhcc-------cchhhccccchHHHHHHHHHhhcCCceEEEeccc------ccccCCCCCc
Q 007044 362 SGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV------AARGLDINDV 428 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv------~~rGlDi~~v 428 (620)
.+.++||.++++.-+.+++..+. .+..++|+.+...+... +.. ..+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 45789999999999888877665 34456676654443322 233 4789999952 1235667778
Q ss_pred cEEEE
Q 007044 429 QLIIQ 433 (620)
Q Consensus 429 ~~VI~ 433 (620)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87775
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=47.04 E-value=8 Score=34.36 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.5
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999853
No 388
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=46.97 E-value=12 Score=36.83 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||+|||||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 678899999999999973
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=46.72 E-value=9.7 Score=33.88 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=14.4
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999854
No 390
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=46.67 E-value=8.8 Score=33.64 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=14.3
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+-+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999854
No 391
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=46.26 E-value=8 Score=34.54 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.6
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=46.26 E-value=8.6 Score=35.34 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.1
Q ss_pred cEEEECCCCChhhHHhH
Q 007044 148 DLVGRARTGQGKTLAFV 164 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (620)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998643
No 393
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=46.14 E-value=11 Score=33.66 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=18.9
Q ss_pred CCCccEEEeccch--hhhhcCcHHHHHHHHHh
Q 007044 259 LSSLKFRVLDEAD--EMLRMGFVEDVELILGK 288 (620)
Q Consensus 259 l~~l~~lVlDEah--~~l~~~f~~~l~~il~~ 288 (620)
..+-+++++||++ ..++..+...+..++..
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 3456789999955 34455566666666544
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.13 E-value=9.7 Score=35.15 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.|++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 395
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=45.90 E-value=13 Score=33.68 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=21.2
Q ss_pred CCCccEEEeccchhh--hhcCcHHHHHHHHH
Q 007044 259 LSSLKFRVLDEADEM--LRMGFVEDVELILG 287 (620)
Q Consensus 259 l~~l~~lVlDEah~~--l~~~f~~~l~~il~ 287 (620)
+.+.+++|+||+..| .+..|.+.+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999998887 44457666766665
No 396
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=45.89 E-value=23 Score=33.29 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEecccc------cccCCCCCc
Q 007044 363 GGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDINDV 428 (620)
Q Consensus 363 ~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~------~rGlDi~~v 428 (620)
+.++||.++++.-+.+++..+. .+..++|+.+.......+ ....+|+|+|.-. ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 4689999999998888777664 244567777655443322 2457899999621 124577778
Q ss_pred cEEEE
Q 007044 429 QLIIQ 433 (620)
Q Consensus 429 ~~VI~ 433 (620)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 397
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=45.76 E-value=12 Score=39.66 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=18.5
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILES 170 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~ 170 (620)
.|.-+++.|++|+|||...+-.+.+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 45678999999999996544433333
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=45.52 E-value=8.2 Score=35.88 Aligned_cols=18 Identities=22% Similarity=0.015 Sum_probs=15.3
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.-+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 399
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=45.41 E-value=7.9 Score=35.25 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556899999999999854
No 400
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=45.18 E-value=7.8 Score=35.45 Aligned_cols=18 Identities=22% Similarity=-0.047 Sum_probs=14.4
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
|.-+.+.|++|||||+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445779999999999843
No 401
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=45.16 E-value=8.4 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=13.8
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
No 402
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=45.03 E-value=9.6 Score=39.71 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999754
No 403
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=44.95 E-value=24 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.9
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
|.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 556888999999999854
No 404
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=44.72 E-value=9 Score=34.23 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
.|.-+++.|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668999999999998543
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=44.64 E-value=11 Score=34.23 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.9
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.-+++.|++|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999854
No 406
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=44.52 E-value=26 Score=31.47 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCCeEEEEEcccccHHHHHHhcc---------cchhhccccchHHHHHHHHHhhcCCceEEEeccc-----cc-ccCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AA-RGLDIN 426 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~---------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv-----~~-rGlDi~ 426 (620)
.+.++||.++++.-+..++..+. .+..++|+.+...... .+ .+..+|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 34679999999988887776653 3445677766544322 22 346789999962 12 234667
Q ss_pred CccEEEE
Q 007044 427 DVQLIIQ 433 (620)
Q Consensus 427 ~v~~VI~ 433 (620)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777764
No 407
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=44.35 E-value=10 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.1
Q ss_pred cCCcEEEECCCCChhhH
Q 007044 145 DGSDLVGRARTGQGKTL 161 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTl 161 (620)
.|.-+.+.||+|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778899999999997
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=44.33 E-value=21 Score=34.92 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.1
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
.|.-+.+.||+|+|||+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668899999999998543
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=44.24 E-value=9.7 Score=34.53 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.2
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999854
No 410
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.19 E-value=21 Score=35.27 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
.++-+.+.+++|+|||....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568889999999997543
No 411
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.15 E-value=9.3 Score=40.28 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.8
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+.+++.||+|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999854
No 412
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.94 E-value=19 Score=35.72 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=13.5
Q ss_pred EEEECCCCChhhHHh
Q 007044 149 LVGRARTGQGKTLAF 163 (620)
Q Consensus 149 vi~~a~TGsGKTla~ 163 (620)
+++.||+|+|||...
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999754
No 413
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=43.94 E-value=11 Score=34.80 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.3
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
..+.+.|++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 414
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=43.88 E-value=9 Score=41.72 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=13.9
Q ss_pred cEEEECCCCChhhHH
Q 007044 148 DLVGRARTGQGKTLA 162 (620)
Q Consensus 148 dvi~~a~TGsGKTla 162 (620)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 415
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=43.83 E-value=15 Score=36.75 Aligned_cols=23 Identities=13% Similarity=-0.179 Sum_probs=17.1
Q ss_pred CCcEEEECCCCChhhHHhHHHHH
Q 007044 146 GSDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~lpil 168 (620)
|.-+++.|++|+|||......+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46689999999999975443333
No 416
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=43.77 E-value=1.9e+02 Score=28.63 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=14.7
Q ss_pred CcEEEECCCCChhhHHhH
Q 007044 147 SDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~ 164 (620)
..+++.|++|+|||..+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999997543
No 417
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=43.71 E-value=10 Score=33.00 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=13.6
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999854
No 418
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=43.69 E-value=10 Score=35.00 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 419
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=43.44 E-value=10 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.4
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+.+.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 420
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=43.25 E-value=19 Score=37.55 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=44.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh-cCCCcEEEeChHHHHHHHhcCCccCCCccEE
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~l 265 (620)
..++||.||++.-|..+++.+... ++.+..++|...... .... ....+|+|||. .+.+ .+++.. ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~-~~~f~~g~~~iLVaT~-----v~~~-GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTE-YPKCKNGDWDFVITTD-----ISEM-GANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCC-GGGSSSCCCSEEEESS-----CC----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHH-HhhccCCCceEEEECC-----hHHh-CeecCC-CEE
Confidence 346999999999999999998775 577888887532211 1222 23579999993 3333 456766 655
Q ss_pred E
Q 007044 266 V 266 (620)
Q Consensus 266 V 266 (620)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 421
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.98 E-value=9.2 Score=33.88 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=11.3
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 422
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=42.95 E-value=9.6 Score=34.57 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.5
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999854
No 423
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.62 E-value=11 Score=34.05 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.4
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999843
No 424
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=42.53 E-value=11 Score=34.77 Aligned_cols=19 Identities=21% Similarity=-0.010 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+.+.||+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999744
No 425
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=42.43 E-value=11 Score=36.10 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.4
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45889999999999854
No 426
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=42.20 E-value=5.3 Score=42.04 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeChHHHHHHHhcCCccCCCc
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
..++||.||++.-|..++..+... ++.+..++|+.+.......+ ....+|+|||. .+.+ .+++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~-GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR-GIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cccc-CCccccC
Confidence 457999999999999988888654 46788888887665443333 23578999993 3333 5678888
Q ss_pred cEEE
Q 007044 263 KFRV 266 (620)
Q Consensus 263 ~~lV 266 (620)
.+||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8876
No 427
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=42.19 E-value=28 Score=31.87 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=39.4
Q ss_pred CCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEecccc------cccCCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDIND 427 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~------~rGlDi~~ 427 (620)
.+.++||.++++.-+.+++..+. .+..++|+.+...+... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999998888777654 34456777655443322 22 27899999522 23556677
Q ss_pred ccEEEE
Q 007044 428 VQLIIQ 433 (620)
Q Consensus 428 v~~VI~ 433 (620)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 428
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=42.17 E-value=31 Score=32.75 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=45.5
Q ss_pred CCCeEEEEEcccccHHHHHHhcc--------cchhhccccchHHHHHHHHHhhcCCceEEEecc-----ccc--ccCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAA--RGLDIN 426 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTd-----v~~--rGlDi~ 426 (620)
.+.++||.++|+.-+.+++..+. .+..++|+........ .+..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 45789999999999888877765 2345666665444332 33344 78999994 222 246778
Q ss_pred CccEEEE
Q 007044 427 DVQLIIQ 433 (620)
Q Consensus 427 ~v~~VI~ 433 (620)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888775
No 429
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=42.08 E-value=11 Score=35.55 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+.-+++.|+.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999844
No 430
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=41.61 E-value=21 Score=32.99 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=45.0
Q ss_pred CCCeEEEEEcccccHHHHHHhcc---------cchhhccccchHHHHHHHHHhhcCCceEEEecccc------cccCCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDIN 426 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~---------~~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv~------~rGlDi~ 426 (620)
.+.++||.++++.-+.++++.+. .+..++|+.+...+...+ ...+|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 45689999999988887776654 344577887766554433 257899999631 1345666
Q ss_pred CccEEEE
Q 007044 427 DVQLIIQ 433 (620)
Q Consensus 427 ~v~~VI~ 433 (620)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6776664
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=41.43 E-value=11 Score=33.55 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=13.1
Q ss_pred EEEECCCCChhhHHh
Q 007044 149 LVGRARTGQGKTLAF 163 (620)
Q Consensus 149 vi~~a~TGsGKTla~ 163 (620)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999854
No 432
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=41.39 E-value=36 Score=33.58 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=51.1
Q ss_pred EEEEC---CCCChhhHHhHHHHHHHHhCCCCCC--cccCCCCCCCeEEEEcccHH---HHHHHHHHHHHhhcCC-CceEE
Q 007044 149 LVGRA---RTGQGKTLAFVLPILESLTNGPTKA--SKKTGYGRAPSVLVLLPTRE---LAKQVHEDFDVYGGAV-GLTSC 219 (620)
Q Consensus 149 vi~~a---~TGsGKTla~~lpil~~l~~~~~~~--~~~~~~~~~~~~Lil~Ptre---La~Qv~~~~~~~~~~~-~~~v~ 219 (620)
||+.| -=|||||=. .+.+++.+.. .... .++++.... ..+++.+... -+.++-+|---+...+ +..+
T Consensus 38 VI~VGNitvGGTGKTP~-vi~L~~~L~~-~~~~ilsRGYg~~~~-~~~~v~~~~~~~~~~~~~GDEp~lla~~~~~~~v- 113 (315)
T 4ehx_A 38 VISVGNLSVGGSGKTSF-VMYLADLLKD-KRVCILSRGYKRKSK-GTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSV- 113 (315)
T ss_dssp EEEEEESBSSCCSHHHH-HHHHHHHTTT-SCEEEEECCCSCSSC-SEEEEEETTEECSCHHHHCHHHHHHHHHCTTSEE-
T ss_pred EEEECCEEeCCCChHHH-HHHHHHHHhh-cCceEEeeccccccc-CceEEeecccccCCcccccCHHHHHHHhCCCceE-
Confidence 45544 458999943 4455555532 2111 122222111 1234444322 3566666644443322 2222
Q ss_pred EEeCCcchHHHHH-HhcCCCcEEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 220 CLYGGAPYHAQEF-KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 220 ~~~gg~~~~~~~~-~l~~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
+.+......-.. ....+++|+|.-.| +++..+ -.+++++++|
T Consensus 114 -~v~~~R~~~~~~~~~~~~~dviIlDDG-----fQh~~l-~rDl~Ivv~d 156 (315)
T 4ehx_A 114 -VASEDRYKGGLLALEKLSPEVFILDDG-----FQHRKL-HRDLNILLLK 156 (315)
T ss_dssp -EEESSHHHHHHHHHHHHCCSEEEEETC-----TTCTTB-CCSEEEEEEE
T ss_pred -EEecchHHHHHHHhhccCCcEEEecCc-----cccccc-cccceEEEee
Confidence 333333222222 22357899987533 343333 4678899998
No 433
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=41.37 E-value=11 Score=40.44 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=16.3
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999743
No 434
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=41.35 E-value=10 Score=38.51 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.4
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
=.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3688999999999853
No 435
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.29 E-value=14 Score=33.91 Aligned_cols=17 Identities=29% Similarity=0.110 Sum_probs=13.8
Q ss_pred cEEEECCCCChhhHHhH
Q 007044 148 DLVGRARTGQGKTLAFV 164 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~ 164 (620)
.+++.||+||||++...
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997543
No 436
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=41.18 E-value=11 Score=35.47 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=42.9
Q ss_pred CCCeEEEEEcccccHHHHHHhccc--------chhhccccchHHHHHHHHHhhcCCceEEEeccc-----ccc---cCCC
Q 007044 362 SGGRTIIFTETKESASQLADLLPG--------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AAR---GLDI 425 (620)
Q Consensus 362 ~~~~~iVF~~t~~~~~~l~~~l~~--------~~~lh~~l~~~~R~~~~~~F~~g~~~vLvaTdv-----~~r---GlDi 425 (620)
.+.++||.++++.-+.+++..+.. +..++|+..... .......+..+|+|+|.- +.+ ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 445799999999998888877652 233444432211 112233567799999942 112 4677
Q ss_pred CCccEEEE
Q 007044 426 NDVQLIIQ 433 (620)
Q Consensus 426 ~~v~~VI~ 433 (620)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88888775
No 437
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=41.17 E-value=18 Score=35.75 Aligned_cols=41 Identities=7% Similarity=-0.149 Sum_probs=26.4
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreL 199 (620)
-+++.+|+|+|||...+-.+.+....+ .+-+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----------~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----------PDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----------TTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----------CCceEEEEeccchh
Confidence 578999999999976554444444321 12248888765444
No 438
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=41.14 E-value=11 Score=34.21 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 439
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=40.90 E-value=11 Score=34.33 Aligned_cols=19 Identities=21% Similarity=-0.055 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+.-+.+.|++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999743
No 440
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=40.90 E-value=17 Score=31.82 Aligned_cols=26 Identities=15% Similarity=-0.005 Sum_probs=18.2
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHh
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
.|.-+.+.||.|+|||. ++-++..+.
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 56668899999999997 334444443
No 441
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=40.67 E-value=12 Score=33.55 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.5
Q ss_pred EEEECCCCChhhHHhH
Q 007044 149 LVGRARTGQGKTLAFV 164 (620)
Q Consensus 149 vi~~a~TGsGKTla~~ 164 (620)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 442
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.61 E-value=9 Score=34.13 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.0
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 443
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=40.42 E-value=12 Score=34.08 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.5
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999998543
No 444
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=40.30 E-value=13 Score=35.00 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=15.1
Q ss_pred cCCcEEEECCCCChhhH
Q 007044 145 DGSDLVGRARTGQGKTL 161 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTl 161 (620)
.|.-+.+.||+|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999997
No 445
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=40.06 E-value=19 Score=37.97 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=27.2
Q ss_pred CCccEEEeccchhhhhcCcHHHHHHHHHhccccCCceEEeec
Q 007044 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301 (620)
Q Consensus 260 ~~l~~lVlDEah~~l~~~f~~~l~~il~~~~~~~~~q~ll~S 301 (620)
..+++||||||++| |..+......++..+ ..|.|+.+
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l----glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL----DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc----CCEEEEEC
Confidence 58999999999666 555666666677666 57887543
No 446
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=40.00 E-value=15 Score=34.10 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999983
No 447
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=39.75 E-value=13 Score=35.18 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.|.-+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999843
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=39.59 E-value=11 Score=34.49 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=13.6
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 449
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=39.51 E-value=13 Score=34.31 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCcEEEECCCCChhhHHh
Q 007044 146 GSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~ 163 (620)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 450
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.49 E-value=14 Score=34.76 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.+..+++.|+.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456999999999999854
No 451
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=39.42 E-value=16 Score=36.02 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=17.7
Q ss_pred cCCcEEEECCCCChhhHHhHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPIL 168 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil 168 (620)
.|.-+++.|++|+|||...+-.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999975444333
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=39.41 E-value=13 Score=34.52 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.6
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 453
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.38 E-value=16 Score=33.93 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHHhH
Q 007044 145 DGSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~ 164 (620)
..+-+++.||+||||++..-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567889999999997543
No 454
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=39.28 E-value=83 Score=30.01 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=57.0
Q ss_pred CCCChhhHHhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH
Q 007044 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233 (620)
Q Consensus 154 ~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~ 233 (620)
...+||..+ +.-++..+... +.++||.+.++..+..+...+... .++.+..++|+.+.......
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~~------------~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALDE------------GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHhC------------CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHH
Confidence 356888654 44455544321 124999999999999888888653 24667788998876544332
Q ss_pred h---cC--CCc-EEEeChHHHHHHHhcCCccCCCccEEEec
Q 007044 234 L---KK--GID-VVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (620)
Q Consensus 234 l---~~--~~~-IlV~Tp~rl~~~l~~~~~~l~~l~~lVlD 268 (620)
+ .. .+. ++++|- .. ...+++...++||+=
T Consensus 156 i~~F~~~~~~~v~L~st~-~~-----g~Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 156 ISKFQNNPSVKFIVLSVK-AG-----GFGINLTSANRVIHF 190 (271)
T ss_dssp HHHHHHCTTCCEEEEECC-TT-----CCCCCCTTCSEEEEC
T ss_pred HHHhcCCCCCCEEEEehh-hh-----cCCcCcccCCEEEEE
Confidence 2 22 355 455552 21 225677777777653
No 455
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=39.23 E-value=28 Score=35.09 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChhhHHhH
Q 007044 146 GSDLVGRARTGQGKTLAFV 164 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~ 164 (620)
|.-+.+.|++|+|||+...
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4558899999999998543
No 456
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.15 E-value=16 Score=40.92 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=18.8
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l 171 (620)
...++++.||+|+|||...- .+...+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~-~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE-GLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH-HHHHHH
Confidence 34689999999999997543 334444
No 457
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=39.09 E-value=13 Score=33.95 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.3
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678899999999753
No 458
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=38.88 E-value=34 Score=41.83 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=22.9
Q ss_pred cCCcEEEECCCCChhhHHhHHHHHHHHhCC
Q 007044 145 DGSDLVGRARTGQGKTLAFVLPILESLTNG 174 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~lpil~~l~~~ 174 (620)
.|..+++.+++|||||...+..+++.+..+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G 62 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREG 62 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 368899999999999976655566666544
No 459
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=38.81 E-value=13 Score=47.79 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=17.9
Q ss_pred HHcCCcEEEECCCCChhhHHh
Q 007044 143 VLDGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 143 il~g~dvi~~a~TGsGKTla~ 163 (620)
+..++.++++||||||||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 447899999999999999754
No 460
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=38.78 E-value=54 Score=37.87 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=54.6
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcCCCceEEEEeCCcchHHHHHH---hcCC---CcEEEeChHHHHHHHhcCCccCCCc
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---LKKG---IDVVIGTPGRIKDHIERGNIDLSSL 262 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~~~gg~~~~~~~~~---l~~~---~~IlV~Tp~rl~~~l~~~~~~l~~l 262 (620)
++||.|+++.-+..++..+... .++.+..++|+++....... ...+ ++|+|+| .. +. ..+++..+
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v----~~-~GlDl~~~ 575 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EI----GS-EGRNFQFA 575 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CC----TT-CSSCCTTC
T ss_pred CEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-ch----hh-cCCCcccC
Confidence 4899999999999888877642 36889999999876544333 3333 8999999 22 22 35789999
Q ss_pred cEEEeccch
Q 007044 263 KFRVLDEAD 271 (620)
Q Consensus 263 ~~lVlDEah 271 (620)
.+||+-..+
T Consensus 576 ~~VI~~d~p 584 (968)
T 3dmq_A 576 SHMVMFDLP 584 (968)
T ss_dssp CEEECSSCC
T ss_pred cEEEEecCC
Confidence 999986655
No 461
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=38.63 E-value=41 Score=37.34 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=50.0
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcC-----------------------------CCceEEEEeCCcchHHHHHHh----c
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGA-----------------------------VGLTSCCLYGGAPYHAQEFKL----K 235 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~-----------------------------~~~~v~~~~gg~~~~~~~~~l----~ 235 (620)
++||.+|+|.-+..++..+...... ....+..++||.+...+.... .
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 4999999999999998888754221 112488899998876654332 2
Q ss_pred CCCcEEEeChHHHHHHHhcCCccCCCccEEE
Q 007044 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (620)
Q Consensus 236 ~~~~IlV~Tp~rl~~~l~~~~~~l~~l~~lV 266 (620)
...+|+|||. .+.. .+++..+.+||
T Consensus 319 g~~~vlvaT~-----~l~~-Gvdip~~~~VI 343 (720)
T 2zj8_A 319 GIIKAVVATP-----TLSA-GINTPAFRVII 343 (720)
T ss_dssp TSSCEEEECS-----TTGG-GCCCCBSEEEE
T ss_pred CCCeEEEECc-----Hhhc-cCCCCceEEEE
Confidence 4579999994 2232 46788887755
No 462
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=38.44 E-value=51 Score=34.78 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=33.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCCCceEEE--------EeCCcchHHHHHHh---c--CCCcEEEeChHHHHHHHhc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC--------LYGGAPYHAQEFKL---K--KGIDVVIGTPGRIKDHIER 254 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~~--------~~gg~~~~~~~~~l---~--~~~~IlV~Tp~rl~~~l~~ 254 (620)
.++||.|+++..+..+++.+.......++++.. ++|+.+...+...+ . ...+|+|||. .+.+
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~~ 465 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VADE 465 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chhc
Confidence 359999999999999999887642222333333 34455444333222 2 3478999993 2233
Q ss_pred CCccCCCccEEEe
Q 007044 255 GNIDLSSLKFRVL 267 (620)
Q Consensus 255 ~~~~l~~l~~lVl 267 (620)
.+++..+++||.
T Consensus 466 -GiDip~v~~VI~ 477 (556)
T 4a2p_A 466 -GIDIVQCNLVVL 477 (556)
T ss_dssp --------CEEEE
T ss_pred -CCCchhCCEEEE
Confidence 567888888875
No 463
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=38.44 E-value=15 Score=34.38 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999983
No 464
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=38.35 E-value=34 Score=39.63 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=37.2
Q ss_pred CccccCC-C-CHHHHHHHHHCCCCC----CcHHHHHHHHHHH---cCCcEEEECCCCChhhHHh
Q 007044 109 NAVSRFR-I-SVPLREKLKSKGIES----LFPIQAMTFDMVL---DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 109 ~~~~~~~-l-~~~l~~~l~~~g~~~----~~~~Q~~~i~~il---~g~dvi~~a~TGsGKTla~ 163 (620)
++|..++ | ++..++......... .+.+-..|+..++ ..+.+|+.|.+|+|||.+.
T Consensus 98 NPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 98 NPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 5566674 4 677777766544333 2445566666655 3467999999999999874
No 465
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=38.28 E-value=10 Score=35.95 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.4
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-+++.|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999753
No 466
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=38.20 E-value=13 Score=33.58 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.7
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+.+.|++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 467
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=38.12 E-value=13 Score=33.85 Aligned_cols=17 Identities=24% Similarity=-0.048 Sum_probs=14.1
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-+.+.|++|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 468
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=37.96 E-value=15 Score=35.57 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=15.0
Q ss_pred cCCcEEEECCCCChhhH
Q 007044 145 DGSDLVGRARTGQGKTL 161 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTl 161 (620)
.|.-+.+.||+|||||+
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778899999999998
No 469
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=37.84 E-value=14 Score=33.92 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=14.2
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
.-+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999854
No 470
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=37.78 E-value=40 Score=29.83 Aligned_cols=23 Identities=13% Similarity=-0.068 Sum_probs=15.7
Q ss_pred cEEEECCCCChhhHHhHHHHHHHH
Q 007044 148 DLVGRARTGQGKTLAFVLPILESL 171 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l 171 (620)
-+.+.|+.|||||... .-++..+
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhh
Confidence 4678999999999743 3334444
No 471
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=37.71 E-value=15 Score=34.81 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||+|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999983
No 472
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=37.63 E-value=15 Score=35.13 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||+|||||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999983
No 473
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=37.58 E-value=63 Score=37.15 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=40.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhcCCCceEE--------EEeCCcchHHHHHHh---c--CCCcEEEeChHHHHHHHh
Q 007044 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC--------CLYGGAPYHAQEFKL---K--KGIDVVIGTPGRIKDHIE 253 (620)
Q Consensus 187 ~~~~Lil~PtreLa~Qv~~~~~~~~~~~~~~v~--------~~~gg~~~~~~~~~l---~--~~~~IlV~Tp~rl~~~l~ 253 (620)
+.++||.++++..+..+++.+.......++++. .++|+++...+...+ + ...+|+|+|. .+.
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~~ 705 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 705 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C--
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----chh
Confidence 456999999999999999999875322233333 334555544433222 2 3478999993 333
Q ss_pred cCCccCCCccEEEec
Q 007044 254 RGNIDLSSLKFRVLD 268 (620)
Q Consensus 254 ~~~~~l~~l~~lVlD 268 (620)
. .+++..+++||.=
T Consensus 706 e-GIDlp~v~~VI~y 719 (936)
T 4a2w_A 706 E-GIDIVQCNLVVLY 719 (936)
T ss_dssp -----CCCCSEEEEE
T ss_pred c-CCcchhCCEEEEe
Confidence 3 5688999998864
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=37.21 E-value=22 Score=36.88 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=15.4
Q ss_pred CcEEEECCCCChhhHHhHH
Q 007044 147 SDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~l 165 (620)
..+++.|++|+|||....-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999976543
No 475
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=36.65 E-value=14 Score=39.21 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.6
Q ss_pred CcEEEECCCCChhhHHh
Q 007044 147 SDLVGRARTGQGKTLAF 163 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~ 163 (620)
+.+++.||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999854
No 476
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=36.59 E-value=50 Score=36.44 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=50.4
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcC--------------------------CCceEEEEeCCcchHHHHHHh----cCCC
Q 007044 189 SVLVLLPTRELAKQVHEDFDVYGGA--------------------------VGLTSCCLYGGAPYHAQEFKL----KKGI 238 (620)
Q Consensus 189 ~~Lil~PtreLa~Qv~~~~~~~~~~--------------------------~~~~v~~~~gg~~~~~~~~~l----~~~~ 238 (620)
++||.+|++.-+..++..+...... .+..+..++|+.+...+.... ....
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 4999999999999998888654211 013467789998876654333 2467
Q ss_pred cEEEeChHHHHHHHhcCCccCCCccEEEe
Q 007044 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (620)
Q Consensus 239 ~IlV~Tp~rl~~~l~~~~~~l~~l~~lVl 267 (620)
+|+|||. .+. ..+++..+.+||-
T Consensus 324 ~vlvaT~-----~l~-~Gidip~~~~VI~ 346 (702)
T 2p6r_A 324 KVVVATP-----TLA-AGVNLPARRVIVR 346 (702)
T ss_dssp CEEEECS-----TTT-SSSCCCBSEEEEC
T ss_pred eEEEECc-----HHh-ccCCCCceEEEEc
Confidence 9999995 233 3567888887664
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.58 E-value=16 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.4
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999983
No 478
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=36.54 E-value=16 Score=34.83 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.1
Q ss_pred cCCcEEEECCCCChhhH
Q 007044 145 DGSDLVGRARTGQGKTL 161 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTl 161 (620)
.|.-+.+.||+|||||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999998
No 479
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=36.16 E-value=17 Score=34.99 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=15.0
Q ss_pred cCCcEEEECCCCChhhH
Q 007044 145 DGSDLVGRARTGQGKTL 161 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTl 161 (620)
.|.-+.+.||+|||||+
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46778899999999998
No 480
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=36.06 E-value=19 Score=35.77 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.4
Q ss_pred cCCcEEEECCCCChhhHHhHH
Q 007044 145 DGSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~~l 165 (620)
.|.-+++.||+|+|||.....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456689999999999975443
No 481
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=36.04 E-value=31 Score=33.71 Aligned_cols=20 Identities=20% Similarity=0.013 Sum_probs=15.3
Q ss_pred CCcEEEECCCCChhhHHhHH
Q 007044 146 GSDLVGRARTGQGKTLAFVL 165 (620)
Q Consensus 146 g~dvi~~a~TGsGKTla~~l 165 (620)
+.-+++.+++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577889999999975543
No 482
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=35.93 E-value=17 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999983
No 483
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=35.91 E-value=37 Score=33.54 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=16.2
Q ss_pred cEEEECCCCChhhHHhHHHHHHHHh
Q 007044 148 DLVGRARTGQGKTLAFVLPILESLT 172 (620)
Q Consensus 148 dvi~~a~TGsGKTla~~lpil~~l~ 172 (620)
-+-+.||+|||||... -.+..+.
T Consensus 94 iigI~GpsGSGKSTl~--~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS--RVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHHH--HHHHHHh
Confidence 3778999999999853 3344444
No 484
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=35.85 E-value=16 Score=34.08 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.9
Q ss_pred cCCcEEEECCCCChhhH
Q 007044 145 DGSDLVGRARTGQGKTL 161 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTl 161 (620)
.|.-+.+.||.|||||+
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999997
No 485
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=35.79 E-value=35 Score=35.33 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=15.7
Q ss_pred CcEEEECCCCChhhHHhHHHH
Q 007044 147 SDLVGRARTGQGKTLAFVLPI 167 (620)
Q Consensus 147 ~dvi~~a~TGsGKTla~~lpi 167 (620)
+.+++++++|+|||....--+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457788999999997654433
No 486
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=35.70 E-value=16 Score=35.70 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=13.1
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+.+.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 487
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=35.45 E-value=15 Score=34.72 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||+|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999983
No 488
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=35.32 E-value=18 Score=34.82 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.5
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||+|+|||+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999983
No 489
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=35.17 E-value=17 Score=33.04 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.6
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+.+.|+.|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999864
No 490
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=35.15 E-value=18 Score=34.40 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.5
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 491
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=35.12 E-value=16 Score=35.47 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.7
Q ss_pred cEEEECCCCChhhHHh
Q 007044 148 DLVGRARTGQGKTLAF 163 (620)
Q Consensus 148 dvi~~a~TGsGKTla~ 163 (620)
-+++.|++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 492
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=35.06 E-value=61 Score=30.10 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=21.6
Q ss_pred ChHHHHHHHhcCCccCCCccEEEeccch
Q 007044 244 TPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (620)
Q Consensus 244 Tp~rl~~~l~~~~~~l~~l~~lVlDEah 271 (620)
||..+.+.|.+..++++++.++-+||--
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 4556666666677889999999999943
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=35.01 E-value=18 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.4
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567788999999999983
No 494
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=34.93 E-value=16 Score=35.92 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 577899999999999983
No 495
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=34.77 E-value=3.2e+02 Score=27.30 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCcEEEECCCCC-hhhHHhHHHHHHHHhCCCCCCcccCCCCCC-CeEEEEcccHHHHHHHHHHHHHhhcCC
Q 007044 137 AMTFDMVLDGSDLVGRARTGQ-GKTLAFVLPILESLTNGPTKASKKTGYGRA-PSVLVLLPTRELAKQVHEDFDVYGGAV 214 (620)
Q Consensus 137 ~~~i~~il~g~dvi~~a~TGs-GKTla~~lpil~~l~~~~~~~~~~~~~~~~-~~~Lil~PtreLa~Qv~~~~~~~~~~~ 214 (620)
...+...+.++.++|.|.||. |.-++- .|... + -+++++.-...-..++..++.......
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~~------~L~~~------------g~~~V~~~~r~~~~~~~~~~~l~~~~~~~ 87 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVTK------EIFKR------------NPQKLHVVDISENNMVELVRDIRSSFGYI 87 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHHH------HHHTT------------CCSEEEEECSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHHH------HHHHC------------CCCEEEEEECCcchHHHHHHHHHHhcCCC
Confidence 345556678999999999984 665543 23321 2 136666665555566666666554433
Q ss_pred CceEEEEeCCcchHHHHHHhc--CCCcEEEeChH
Q 007044 215 GLTSCCLYGGAPYHAQEFKLK--KGIDVVIGTPG 246 (620)
Q Consensus 215 ~~~v~~~~gg~~~~~~~~~l~--~~~~IlV~Tp~ 246 (620)
+..+..+.++........... .++|+||-..+
T Consensus 88 ~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa 121 (399)
T 3nzo_A 88 NGDFQTFALDIGSIEYDAFIKADGQYDYVLNLSA 121 (399)
T ss_dssp SSEEEEECCCTTSHHHHHHHHHCCCCSEEEECCC
T ss_pred CCcEEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 456777777765544333332 57888886543
No 496
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=34.68 E-value=18 Score=34.28 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.4
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|+|||..
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999983
No 497
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=34.57 E-value=64 Score=36.23 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=36.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhhcCC--------CceEEEEeCCcchHHHHHHh---c--CCCcEEEeChHHHHHHHhc
Q 007044 188 PSVLVLLPTRELAKQVHEDFDVYGGAV--------GLTSCCLYGGAPYHAQEFKL---K--KGIDVVIGTPGRIKDHIER 254 (620)
Q Consensus 188 ~~~Lil~PtreLa~Qv~~~~~~~~~~~--------~~~v~~~~gg~~~~~~~~~l---~--~~~~IlV~Tp~rl~~~l~~ 254 (620)
.++||.|+++..+..+++.+....... |.....++|+++...+...+ + ...+|+|||. .+..
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~~~ 706 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VADE 706 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C---
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----chhc
Confidence 359999999999999999997642222 23333444555544433222 2 3578999993 2222
Q ss_pred CCccCCCccEEEec
Q 007044 255 GNIDLSSLKFRVLD 268 (620)
Q Consensus 255 ~~~~l~~l~~lVlD 268 (620)
.+++..+++||.=
T Consensus 707 -GIDlp~v~~VI~y 719 (797)
T 4a2q_A 707 -GIDIVQCNLVVLY 719 (797)
T ss_dssp -----CCCSEEEEE
T ss_pred -CCCchhCCEEEEe
Confidence 5678889988853
No 498
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=34.45 E-value=15 Score=41.64 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCChhhHHh
Q 007044 145 DGSDLVGRARTGQGKTLAF 163 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla~ 163 (620)
.++.++++||+|||||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4578999999999999743
No 499
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=34.37 E-value=18 Score=34.37 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999983
No 500
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=34.31 E-value=18 Score=34.64 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.4
Q ss_pred cCCcEEEECCCCChhhHH
Q 007044 145 DGSDLVGRARTGQGKTLA 162 (620)
Q Consensus 145 ~g~dvi~~a~TGsGKTla 162 (620)
.|.-+.+.||.|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999983
Done!