BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007045
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 95 LIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEIN 154
L+ D ER DD +LRFL+ARKFD+ AK M+ +WRK++G DTI++DF + E
Sbjct: 40 LLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKP 98
Query: 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPA 214
+ +YP YH DK+GRPVY E LG V+ +++ +VT+ +R ++ V +E + PA
Sbjct: 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPA 158
Query: 215 CTIAAKRHIDSSTSILDVQGVNFSK--NARELILRLQKIDGDNYPETLHQMFIINAGPGF 272
C+ AA +++S +I+D++G++ S + + I + YPE + + +IINA GF
Sbjct: 159 CSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGF 218
Query: 273 RLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QGGCLRSD 331
+ K FLDP T SKI +LG+ YQ +LL+ I A LP GG + +GG SD
Sbjct: 219 STAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSD 278
Query: 332 KGPWQNPEIL 341
GPW++P+ +
Sbjct: 279 IGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 161/270 (59%), Gaps = 15/270 (5%)
Query: 83 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVD 142
E+ +A+ FR S+++++ ER DD +LRFL+ARKFDI+ + M+ E +WR+E+G +
Sbjct: 38 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 143 TIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRY 196
TI+ED+E KE ++ YP YH VDK+GRP+Y E LG ++ K+ ++TT +
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQM 155
Query: 197 IRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFSKNAREL--ILRLQKIDGD 254
+R V+ +E + PAC+ A I++S ++LD++G++ S L I + I +
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQN 215
Query: 255 NYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEF 314
YPE + + +II++ GF ++ VK FLDP T SKI +LG+ Y+ +LL+ I LP
Sbjct: 216 YYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVK 275
Query: 315 LGGTC---NCADQGGCLRSDKGPWQNPEIL 341
GGT N D+ SD GPW++P +
Sbjct: 276 YGGTSVLHNPNDK--FYYSDIGPWRDPRYI 303
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 160/270 (59%), Gaps = 15/270 (5%)
Query: 83 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVD 142
E+ +A+ FR S+++++ ER DD +LRFL+ARKFDI+ + M+ E +WR+E+G +
Sbjct: 38 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 143 TIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRY 196
TI+ED+E KE ++ YP YH VDK+GRP+Y LG ++ K+ ++TT +
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQM 155
Query: 197 IRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFSKNAREL--ILRLQKIDGD 254
+R V+ +E + PAC+ A I++S ++LD++G++ S L I + I +
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQN 215
Query: 255 NYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEF 314
YPE + + +II++ GF ++ VK FLDP T SKI +LG+ Y+ +LL+ I LP
Sbjct: 216 YYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVK 275
Query: 315 LGGTC---NCADQGGCLRSDKGPWQNPEIL 341
GGT N D+ SD GPW++P +
Sbjct: 276 YGGTSVLHNPNDK--FYYSDIGPWRDPRYI 303
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 14/239 (5%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ M + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R ++ E
Sbjct: 73 S---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 129
Query: 206 KAFAVKFPAC---TIAAKRHIDSSTSILDVQGVNFS---KNARELILRLQKIDGDNYPET 259
+ C T R +++ T I D +G+ K A E + +NYPET
Sbjct: 130 ----LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPET 185
Query: 260 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 318
L ++F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 14/239 (5%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ M + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R ++ E
Sbjct: 73 S---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 129
Query: 206 KAFAVKFPAC---TIAAKRHIDSSTSILDVQGVNFS---KNARELILRLQKIDGDNYPET 259
+ C T R +++ T I D +G+ K A E + +NYPET
Sbjct: 130 ----LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPET 185
Query: 260 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 318
L ++F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 14/239 (5%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R + E
Sbjct: 73 S---WQPPEVIQQYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECE 129
Query: 206 KAFAVKFPAC---TIAAKRHIDSSTSILDVQGVNFS---KNARELILRLQKIDGDNYPET 259
+ C T R +++ T I D +G+ K A E +NYPET
Sbjct: 130 ----LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPET 185
Query: 260 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 318
L ++F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 110 MMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV-- 167
+LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 51 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLK---AGYHGVLR 105
Query: 168 --DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDS 225
D G V I R+ D Y + V V+ + +R +
Sbjct: 106 SRDPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NG 153
Query: 226 STSILDVQGVNFSKNAR---ELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSF 282
+I D++G FS + + ++ + D++P + + +IN F +++ +K F
Sbjct: 154 IKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF 213
Query: 283 LDPKTTSKIHVLGNKYQSKLLE 304
L K +IH+ GN Y+ LL+
Sbjct: 214 LTEKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 24/202 (11%)
Query: 110 MMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV-- 167
+LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLK---AGYHGVLR 89
Query: 168 --DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDS 225
D G V I R+ D Y + V V+ + +R +
Sbjct: 90 SRDPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NG 137
Query: 226 STSILDVQGVNFSKNAR---ELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSF 282
+I D++G FS + + ++ + D++P + + +IN F +++ +K F
Sbjct: 138 IKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPF 197
Query: 283 LDPKTTSKIHVLGNKYQSKLLE 304
L K +IH GN Y+ LL+
Sbjct: 198 LTEKIKERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 38/277 (13%)
Query: 77 EDVRDVEEL---QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133
E VR+++E+ QA ++ + E + E+ D LRF++ARKF++ +A + +
Sbjct: 60 EAVRELQEMVQAQAASGEELAVAVAERVQEK--DSGFFLRFIRARKFNVGRAYELLRGYV 117
Query: 134 QWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV----DKEGRPVYIERLGKVDSNKLMQ 189
+R ++ E F+ V GY GV DK GR V + + S ++
Sbjct: 118 NFRLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI-- 170
Query: 190 VTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFSKNA-------R 242
T D ++ + EK + + I+ I + +G + A R
Sbjct: 171 --TFDEILQAYCFILEKLLENE--------ETQINGFCIIENFKGFTMQQAASLRTSDLR 220
Query: 243 ELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 302
+++ LQ D++P + I+ F +N VK FL K ++ V G+ S
Sbjct: 221 KMVDMLQ----DSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGF 275
Query: 303 LEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPE 339
+ ID LP GGT D GP E
Sbjct: 276 YQEIDENILPSDFGGTLPKYDGKAVAEQLFGPQAQAE 312
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 26/271 (9%)
Query: 77 EDVRDVEE-LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQW 135
E VR+++E +QA A + L + + D LRF++ARKF++ +A + + +
Sbjct: 60 EAVRELQEXVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNF 119
Query: 136 RKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV----DKEGRPVYIERLGKVDSNKLMQVT 191
R ++ E F+ V GY GV DK GR V + + S ++
Sbjct: 120 RLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVXLFNIENWQSQEI---- 170
Query: 192 TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFSKNARELILRLQK- 250
T D ++ + EK + + I+ I + +G + A L+K
Sbjct: 171 TFDEILQAYCFILEKLLENE--------ETQINGFCIIENFKGFTXQQAASLRTSDLRKX 222
Query: 251 IDG--DNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 308
+D D++P + I+ F +N VK FL K ++ V G+ S + ID
Sbjct: 223 VDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDE 281
Query: 309 RELPEFLGGTCNCADQGGCLRSDKGPWQNPE 339
LP GGT D GP E
Sbjct: 282 NILPSDFGGTLPKYDGKAVAEQLFGPQAQAE 312
>pdb|3G02|A Chain A, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
From Aspergillus Niger Generated By Directed Evolution
pdb|3G02|B Chain B, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
From Aspergillus Niger Generated By Directed Evolution
Length = 408
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 492 AYRVTHRIPETSTGHDLNISEVAVDANEKEEFRP----PSPSPSLTEVD----LLSSVTK 543
AY + H ++ GH L+ S +A+ A E++ P PS ++ E+ L S +
Sbjct: 251 AYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPR 310
Query: 544 RLSELEEKVDTLQAKPSEMPYEKEELLH 571
+ E V T A PY+KE +H
Sbjct: 311 AIHTYREWVPTASAPNGATPYQKELYIH 338
>pdb|3U7I|A Chain A, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|B Chain B, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|C Chain C, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|D Chain D, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
Length = 223
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 427 YDEYVPMVDKAVDSSWKKQ 445
YD+ VP +DK V S+W+KQ
Sbjct: 50 YDDVVPXIDKTVLSAWEKQ 68
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 33/220 (15%)
Query: 111 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHG----YHG 166
LR+L+A K+ + L WR+EFG+ + E+ K ++++ G
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149
Query: 167 VDKEGRPVYIERLGKVD---SNKLMQ--VTTMDRYIRYHVQGFEK-AFAVKFPACTIAAK 220
+ + RP+ + G+ + S++ +Q V ++R I + G + A + F K
Sbjct: 150 YENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPK 209
Query: 221 RHIDSSTSILDVQGVNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVK 280
+S + V +E++ LQ +YPE L + + N L W +K
Sbjct: 210 VPGNSKIPPIGV--------GKEVLHILQT----HYPERLGKALLTNIP---WLAWTFLK 254
Query: 281 ---SFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGG 317
F+DP T K+ + ++ + EL GG
Sbjct: 255 LIHPFIDPLTREKL-----VFDEPFVKYVPKNELDSLYGG 289
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 497 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 554
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 555 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 497 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 554
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 555 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 497 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 554
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 555 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 497 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 554
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 555 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 497 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 554
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 555 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 497 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 554
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 555 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,891,166
Number of Sequences: 62578
Number of extensions: 751442
Number of successful extensions: 1739
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 30
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)