Query 007045
Match_columns 620
No_of_seqs 341 out of 1565
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 18:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 1.7E-43 3.7E-48 372.2 23.1 274 70-346 6-287 (317)
2 KOG1470 Phosphatidylinositol t 100.0 1.8E-37 3.9E-42 321.3 18.5 226 86-335 27-253 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 3.2E-29 6.9E-34 236.1 10.3 154 155-318 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 4.3E-27 9.4E-32 221.3 14.8 154 156-320 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.2E-23 2.6E-28 195.1 14.8 143 164-318 13-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 1.3E-13 2.8E-18 129.8 3.3 140 164-323 6-148 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 7.4E-08 1.6E-12 76.1 5.1 47 85-132 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.0 2.5E-05 5.3E-10 83.9 9.6 125 167-310 89-214 (467)
9 COG4064 MtrG Tetrahydromethano 83.2 1.3 2.9E-05 36.6 3.2 25 532-556 11-35 (75)
10 PRK01026 tetrahydromethanopter 81.0 1.8 4E-05 36.6 3.4 25 532-556 11-35 (77)
11 TIGR01149 mtrG N5-methyltetrah 80.4 1.9 4.2E-05 35.7 3.2 25 532-556 8-32 (70)
12 PF04210 MtrG: Tetrahydrometha 74.4 3.1 6.6E-05 34.6 2.8 25 532-556 8-32 (70)
13 PF10805 DUF2730: Protein of u 65.8 65 0.0014 29.0 9.7 17 474-490 9-25 (106)
14 PF14555 UBA_4: UBA-like domai 63.1 24 0.00051 26.3 5.4 36 86-130 2-37 (43)
15 PF02845 CUE: CUE domain; Int 46.9 63 0.0014 23.8 5.4 38 86-131 3-40 (42)
16 KOG1962 B-cell receptor-associ 46.5 94 0.002 31.7 8.1 73 536-608 114-191 (216)
17 PHA01750 hypothetical protein 43.1 1.2E+02 0.0026 25.2 6.6 42 568-611 30-71 (75)
18 TIGR02132 phaR_Bmeg polyhydrox 42.2 92 0.002 30.8 7.0 74 534-608 70-154 (189)
19 KOG0612 Rho-associated, coiled 42.2 87 0.0019 39.2 8.3 47 538-592 443-492 (1317)
20 smart00546 CUE Domain that may 42.1 69 0.0015 23.6 5.0 38 86-131 4-41 (43)
21 TIGR03752 conj_TIGR03752 integ 41.2 1.5E+02 0.0033 33.7 9.5 73 533-605 56-135 (472)
22 TIGR03185 DNA_S_dndD DNA sulfu 40.1 1.3E+02 0.0027 35.6 9.3 65 535-601 390-454 (650)
23 PF05377 FlaC_arch: Flagella a 36.5 1.1E+02 0.0023 24.7 5.3 35 576-610 1-35 (55)
24 PF10368 YkyA: Putative cell-w 36.2 1.5E+02 0.0032 30.0 7.8 78 535-612 31-112 (204)
25 COG4479 Uncharacterized protei 35.0 92 0.002 26.2 4.9 52 85-136 18-72 (74)
26 PF08317 Spc7: Spc7 kinetochor 34.9 2.1E+02 0.0045 30.8 9.2 75 537-611 178-252 (325)
27 COG1340 Uncharacterized archae 34.8 3E+02 0.0065 29.4 10.0 65 538-611 109-173 (294)
28 KOG1838 Alpha/beta hydrolase [ 32.9 2.5E+02 0.0054 31.5 9.4 86 168-278 121-215 (409)
29 PRK09039 hypothetical protein; 32.8 3.5E+02 0.0076 29.4 10.6 20 476-495 28-47 (343)
30 PF01496 V_ATPase_I: V-type AT 32.4 1.8E+02 0.0038 35.0 9.0 64 546-609 204-271 (759)
31 KOG3313 Molecular chaperone Pr 31.9 2.1E+02 0.0047 28.3 7.7 62 550-611 22-86 (187)
32 PF10212 TTKRSYEDQ: Predicted 31.4 2.5E+02 0.0055 32.3 9.3 54 537-601 442-509 (518)
33 PF12718 Tropomyosin_1: Tropom 31.2 1.9E+02 0.0041 27.5 7.2 69 535-603 34-108 (143)
34 PF13080 DUF3926: Protein of u 31.1 42 0.00092 25.3 2.1 22 585-609 13-34 (44)
35 PF11221 Med21: Subunit 21 of 30.9 4E+02 0.0088 25.1 9.5 61 541-609 78-138 (144)
36 KOG0249 LAR-interacting protei 30.2 3.2E+02 0.0069 32.7 9.9 75 534-608 171-249 (916)
37 PRK00117 recX recombination re 28.6 56 0.0012 31.0 3.2 97 27-132 53-153 (157)
38 PF14712 Snapin_Pallidin: Snap 28.4 1.4E+02 0.003 25.6 5.4 31 579-609 11-41 (92)
39 PF05276 SH3BP5: SH3 domain-bi 27.8 4.4E+02 0.0095 27.3 9.7 53 543-597 98-150 (239)
40 PHA00687 hypothetical protein 26.9 1.4E+02 0.0031 23.0 4.4 30 560-589 9-48 (56)
41 PF11802 CENP-K: Centromere-as 26.7 4.2E+02 0.0091 28.0 9.3 39 535-573 51-89 (268)
42 PRK14136 recX recombination re 25.9 48 0.001 35.5 2.4 24 108-131 278-301 (309)
43 PF03961 DUF342: Protein of un 25.9 3.2E+02 0.0069 30.7 9.1 55 537-591 342-398 (451)
44 PF04740 LXG: LXG domain of WX 25.6 2.9E+02 0.0063 27.0 7.9 113 465-597 47-160 (204)
45 PF13234 rRNA_proc-arch: rRNA- 25.2 2.2E+02 0.0048 29.4 7.2 70 538-610 182-263 (268)
46 PRK14137 recX recombination re 24.7 1.3E+02 0.0029 30.1 5.2 26 109-134 156-181 (195)
47 PLN03214 probable enoyl-CoA hy 24.6 2.3E+02 0.005 29.6 7.3 21 594-614 250-270 (278)
48 PF10158 LOH1CR12: Tumour supp 24.6 2.4E+02 0.0052 26.5 6.6 63 539-602 52-114 (131)
49 PRK10884 SH3 domain-containing 24.5 5.3E+02 0.011 26.1 9.4 71 542-612 92-169 (206)
50 TIGR02132 phaR_Bmeg polyhydrox 24.4 2.2E+02 0.0048 28.2 6.4 12 586-597 142-153 (189)
51 PF04880 NUDE_C: NUDE protein, 23.9 98 0.0021 30.3 3.9 32 565-597 4-35 (166)
52 PHA02562 46 endonuclease subun 23.7 2.2E+02 0.0047 32.5 7.4 74 535-609 298-371 (562)
53 PF05276 SH3BP5: SH3 domain-bi 23.5 4E+02 0.0088 27.6 8.5 74 538-611 144-227 (239)
54 PF01102 Glycophorin_A: Glycop 23.1 1.1E+02 0.0023 28.5 3.9 32 468-499 64-95 (122)
55 PRK09261 phospho-2-dehydro-3-d 22.9 4E+02 0.0086 29.3 8.7 68 160-238 205-273 (349)
56 PF15294 Leu_zip: Leucine zipp 22.7 2.2E+02 0.0048 30.2 6.5 61 543-614 190-250 (278)
57 PF05529 Bap31: B-cell recepto 22.7 2.4E+02 0.0053 27.6 6.6 62 537-599 119-184 (192)
58 PRK06569 F0F1 ATP synthase sub 22.6 77 0.0017 30.7 2.9 95 470-586 10-106 (155)
59 PF05335 DUF745: Protein of un 22.0 1.5E+02 0.0032 29.7 4.8 31 564-594 140-177 (188)
60 TIGR00034 aroFGH phospho-2-deh 21.6 1.8E+02 0.0039 31.8 5.8 70 159-239 199-268 (344)
61 cd00392 Ribosomal_L13 Ribosoma 21.1 2.2E+02 0.0048 26.1 5.4 49 228-300 2-57 (114)
62 PF15175 SPATA24: Spermatogene 21.0 2.4E+02 0.0052 27.1 5.7 58 535-596 2-59 (153)
63 COG1842 PspA Phage shock prote 20.8 9.1E+02 0.02 24.8 10.4 50 536-591 59-108 (225)
64 PF12297 EVC2_like: Ellis van 20.4 4.5E+02 0.0097 29.5 8.5 20 471-490 69-88 (429)
65 PF09789 DUF2353: Uncharacteri 20.4 4E+02 0.0087 28.9 8.0 62 533-594 23-98 (319)
66 PF11068 YlqD: YlqD protein; 20.2 5.1E+02 0.011 24.4 7.8 50 563-612 15-72 (131)
67 PF14282 FlxA: FlxA-like prote 20.2 4.2E+02 0.009 23.8 7.0 52 533-585 16-68 (106)
68 PF15027 DUF4525: Domain of un 20.1 98 0.0021 29.0 2.9 23 534-556 84-106 (138)
69 smart00787 Spc7 Spc7 kinetocho 20.0 5.3E+02 0.011 27.8 8.9 74 537-610 173-260 (312)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=372.20 Aligned_cols=274 Identities=46% Similarity=0.762 Sum_probs=242.5
Q ss_pred ccccccccCCCC--HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccc
Q 007045 70 RVSSVSIEDVRD--VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMED 147 (620)
Q Consensus 70 ~v~s~~ied~~d--~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~g~d~i~~d 147 (620)
.++.+..+++.+ +.+.+.++++| |+..+++++...+|+++||||||||+||+++|+++|.+++.||++++.+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~ 84 (317)
T KOG1471|consen 6 MLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED 84 (317)
T ss_pred ccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc
Confidence 344444444444 55677777777 888899999755555799999999999999999999999999999999999876
Q ss_pred cchHHHHHHHhhcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeE
Q 007045 148 FEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 227 (620)
Q Consensus 148 ~~~~el~~v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~t 227 (620)
.....++.+++|++++|+|++|+||++.+.|..+...++..+...+++++++..+|+.+..+++.|......+++|++
T Consensus 85 --~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~ 162 (317)
T KOG1471|consen 85 --FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIV 162 (317)
T ss_pred --cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeE
Confidence 344445666899999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEEeCCCCCCC---chHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHh
Q 007045 228 SILDVQGVNFS---KNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLE 304 (620)
Q Consensus 228 vIiDl~Gls~s---k~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e 304 (620)
+|+|++|+++. +.....++.++.++|+|||++++++||||+|++|.++|++|||||+++|++||++++.++.+.|++
T Consensus 163 ~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k 242 (317)
T KOG1471|consen 163 TIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLK 242 (317)
T ss_pred EEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhh
Confidence 99999999776 467899999999999999999999999999999999999999999999999999777778899999
Q ss_pred hcCcCCCccccCCCcCcC---CCCCCccCCCCCCCCHHHHHHHhc
Q 007045 305 IIDARELPEFLGGTCNCA---DQGGCLRSDKGPWQNPEILKMVLN 346 (620)
Q Consensus 305 ~Id~s~LP~eyGGt~~~~---~~ggcl~~~~gpW~~p~~~k~~~~ 346 (620)
+|++++||++|||+|.+. ..++|..++.+||.++.+.+....
T Consensus 243 ~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (317)
T KOG1471|consen 243 YIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQE 287 (317)
T ss_pred hCCHhhCccccCCCccccccccCCcCccccccccccccccccccc
Confidence 999999999999999996 357799999999998877654433
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=321.35 Aligned_cols=226 Identities=29% Similarity=0.458 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHhCCC-CCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHhhcCccc
Q 007045 86 QAVDAFRQSLIMDEL-LPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGY 164 (620)
Q Consensus 86 ~al~efRq~L~~~~~-LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~g~d~i~~d~~~~el~~v~k~~p~~~ 164 (620)
..+.+.+..+..... .-...+| .+++|||||||||+++|.+|+.++|.||+.+++..++ ...++..-+..+.+++
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi 102 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYI 102 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEE
Confidence 455666665521110 1112355 5999999999999999999999999999999987722 2345666677899999
Q ss_pred ccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCCCCchHHHH
Q 007045 165 HGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFSKNAREL 244 (620)
Q Consensus 165 ~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls~sk~~~~~ 244 (620)
+|.|++||||+|+++....++. .+..++++++||++|.++..+. ..++++++++|++|+++++++..+
T Consensus 103 ~G~D~~gRPVl~~~~~~~~qn~----~t~~~~~r~~Vy~mE~Ai~~lp--------~~qe~~~~L~D~~~fs~sN~d~~~ 170 (324)
T KOG1470|consen 103 LGHDKDGRPVLYLRPRPHRQNT----KTQKELERLLVYTLENAILFLP--------PGQEQFVWLFDLTGFSMSNPDIKF 170 (324)
T ss_pred ecccCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHHHhCC--------CCcceEEEEEecccCcccCCCcHH
Confidence 9999999999999766555554 5899999999999999998754 457889999999999999999999
Q ss_pred HHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCcCCCccccCCCcCcCCC
Q 007045 245 ILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQ 324 (620)
Q Consensus 245 ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s~LP~eyGGt~~~~~~ 324 (620)
.+.+++++|+||||||+..+|+|+||+|..+|+++||||||+|++||.|+.+. ..|.++||+++||..|||+..+.|
T Consensus 171 ~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~~y- 247 (324)
T KOG1470|consen 171 LKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLFEY- 247 (324)
T ss_pred HHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCccccc-
Confidence 99999999999999999999999999999999999999999999999999774 559999999999999999888876
Q ss_pred CCCccCCCCCC
Q 007045 325 GGCLRSDKGPW 335 (620)
Q Consensus 325 ggcl~~~~gpW 335 (620)
.+..+|
T Consensus 248 -----~~e~~~ 253 (324)
T KOG1470|consen 248 -----THEEYW 253 (324)
T ss_pred -----CCcchh
Confidence 344577
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=3.2e-29 Score=236.11 Aligned_cols=154 Identities=36% Similarity=0.582 Sum_probs=128.5
Q ss_pred HHHhhcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCC
Q 007045 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (620)
Q Consensus 155 ~v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~G 234 (620)
++.+.++++++|+|++||||+|+++|++|+.+ .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 36778999999999999999999999999985 57899999999999999865321 356899999999999
Q ss_pred CCCCchH---HHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCC-CchhHHHhhcCcCC
Q 007045 235 VNFSKNA---RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 310 (620)
Q Consensus 235 ls~sk~~---~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~-~~~~~L~e~Id~s~ 310 (620)
+++++.. .++++.++++++++||++++++||||+|++|+.+|+++++||+++|++||+|+++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 9987766 8999999999999999999999999999999999999999999999999999965 45578999999999
Q ss_pred CccccCCC
Q 007045 311 LPEFLGGT 318 (620)
Q Consensus 311 LP~eyGGt 318 (620)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=4.3e-27 Score=221.34 Aligned_cols=154 Identities=40% Similarity=0.652 Sum_probs=140.2
Q ss_pred HHhhcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCC
Q 007045 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (620)
Q Consensus 156 v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gl 235 (620)
...++++++ |+|++||||+|+++++++++. .+.+++++++++.+|.++... ....++.++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 455677777 999999999999999998765 699999999999999988641 124568999999999999
Q ss_pred CCCchHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCcCCCcccc
Q 007045 236 NFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFL 315 (620)
Q Consensus 236 s~sk~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s~LP~ey 315 (620)
++++...+.++.++++++++||++++++||||+|++|+++|+++++|+++++++||+++++++.+.|.++||+++||.+|
T Consensus 74 ~~~~~~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~ 153 (158)
T smart00516 74 SMSNPDLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEEL 153 (158)
T ss_pred CcccccHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhh
Confidence 99888899999999999999999999999999999999999999999999999999999987678899999999999999
Q ss_pred CCCcC
Q 007045 316 GGTCN 320 (620)
Q Consensus 316 GGt~~ 320 (620)
||+|.
T Consensus 154 GG~~~ 158 (158)
T smart00516 154 GGTLD 158 (158)
T ss_pred CCCCC
Confidence 99974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.91 E-value=1.2e-23 Score=195.10 Aligned_cols=143 Identities=40% Similarity=0.623 Sum_probs=126.6
Q ss_pred cccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCCCCch--H
Q 007045 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFSKN--A 241 (620)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls~sk~--~ 241 (620)
..|.|++||||+++++++.++... .+.+++++++++.+|..+..... ...++++|+|++|+++++. .
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~--------~~~~~~~i~D~~~~~~~~~~~~ 81 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDDE--------QVEGFVVIIDLKGLSLSHLLPD 81 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhhh--------cccceEEEEECCCCChhccchh
Confidence 345699999999999997666543 34489999999999999876322 2379999999999988765 7
Q ss_pred HHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCcCCCccccCCC
Q 007045 242 RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 318 (620)
Q Consensus 242 ~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s~LP~eyGGt 318 (620)
.+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 88999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.39 E-value=1.3e-13 Score=129.77 Aligned_cols=140 Identities=21% Similarity=0.352 Sum_probs=94.8
Q ss_pred cccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCCCC-chHH
Q 007045 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFS-KNAR 242 (620)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls~s-k~~~ 242 (620)
..|+|++||||+++...+. ++. .+.+.++.|++..+...+ ...++++|+|++|.+.. .+..
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~-------------~~~~f~vVid~~~~~~~~~~~~ 67 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV-------------VDKPFSVVIDHTGFSRSSEPSL 67 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT-------------TTS-EEEEEE-TT--GGG---H
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh-------------cCCCEEEEEEcCCCccccCCch
Confidence 4589999999999997777 432 366777777665552111 13469999999999664 4578
Q ss_pred HHHHHHHHhhcccccccccEEEEEecChHHHHHH-HHHHhcCChhh-hcceEEeCCCchhHHHhhcCcCCCccccCCCcC
Q 007045 243 ELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGGTCN 320 (620)
Q Consensus 243 ~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw-~lVKpFLd~kT-r~KI~~lg~~~~~~L~e~Id~s~LP~eyGGt~~ 320 (620)
..++.+.+.+...|+..|+++||||++++++.++ .+.+++++.+. ..||.++.+ .++|.++||+++||+.+||++.
T Consensus 68 ~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~~~ 145 (149)
T PF13716_consen 68 SWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGVLQ 145 (149)
T ss_dssp HHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HHH-
T ss_pred HHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCEEe
Confidence 9999999999999999999999999999999999 55677789988 999999965 5899999999999999999887
Q ss_pred cCC
Q 007045 321 CAD 323 (620)
Q Consensus 321 ~~~ 323 (620)
.++
T Consensus 146 ~d~ 148 (149)
T PF13716_consen 146 YDH 148 (149)
T ss_dssp ---
T ss_pred cCc
Confidence 643
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.58 E-value=7.4e-08 Score=76.10 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007045 85 LQAVDAFRQSLIMD--------ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (620)
Q Consensus 85 ~~al~efRq~L~~~--------~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (620)
+++|++|++.|... ......++| .+||||||||+||+++|.+||.++
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999873 345566777 599999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=2.5e-05 Score=83.94 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=98.3
Q ss_pred CCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCCC-CchHHHHH
Q 007045 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNF-SKNARELI 245 (620)
Q Consensus 167 ~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls~-sk~~~~~i 245 (620)
.|++||+|+++-..++-..+= ..-.++++|.++.++..++. ..+.++=-.|+.. .++.+.++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp~l~~l 151 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKPYLQLL 151 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccchHHHH
Confidence 699999999998888776531 23334899999999998864 2555655567633 34556666
Q ss_pred HHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCcCC
Q 007045 246 LRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARE 310 (620)
Q Consensus 246 k~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s~ 310 (620)
....+-+-.+|=--++.+|+|.+-|+.+++|+++|||++.+...||+-+ ++.++|.++|.-++
T Consensus 152 ~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~r 214 (467)
T KOG4406|consen 152 FDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNR 214 (467)
T ss_pred HHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhh
Confidence 6666666677888999999999999999999999999999999999998 55789999887443
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=83.18 E-value=1.3 Score=36.61 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 007045 532 LTEVDLLSSVTKRLSELEEKVDTLQ 556 (620)
Q Consensus 532 ~~~~~~~~~~~~r~~~lEekv~~L~ 556 (620)
++++|++..+.+||.++|+||+.-.
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 5889999999999999999997643
No 10
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=80.96 E-value=1.8 Score=36.63 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 007045 532 LTEVDLLSSVTKRLSELEEKVDTLQ 556 (620)
Q Consensus 532 ~~~~~~~~~~~~r~~~lEekv~~L~ 556 (620)
+++.++|..+++||.++||||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998643
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=80.44 E-value=1.9 Score=35.71 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 007045 532 LTEVDLLSSVTKRLSELEEKVDTLQ 556 (620)
Q Consensus 532 ~~~~~~~~~~~~r~~~lEekv~~L~ 556 (620)
+++.+++..+++||.++|+||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998643
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=74.44 E-value=3.1 Score=34.62 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 007045 532 LTEVDLLSSVTKRLSELEEKVDTLQ 556 (620)
Q Consensus 532 ~~~~~~~~~~~~r~~~lEekv~~L~ 556 (620)
+++.++|..+++||.++|+||+.-+
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 4788999999999999999997543
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.83 E-value=65 Score=28.99 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007045 474 WAAVMAFFMMFVTLFRS 490 (620)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ 490 (620)
|..+.|++..+++++..
T Consensus 9 w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWL 25 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45566666666666663
No 14
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=63.12 E-value=24 Score=26.33 Aligned_cols=36 Identities=17% Similarity=0.411 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 007045 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (620)
Q Consensus 86 ~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (620)
+.|.+|...... ++ .....||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg~--------~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITGA--------DE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH-S--------SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCc--------CH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 567788877631 23 4789999999999999988764
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=46.87 E-value=63 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007045 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (620)
Q Consensus 86 ~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (620)
+.|+.+++.. |. .+. ..+..-|.++++|++.|..+|-+
T Consensus 3 ~~v~~L~~mF------P~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4556666554 33 333 47899999999999999998754
No 16
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.45 E-value=94 Score=31.72 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007045 536 DLLSSVTKRLSELEEK-----VDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 608 (620)
Q Consensus 536 ~~~~~~~~r~~~lEek-----v~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 608 (620)
+.++..+.+|..|++- -+....++.+=+-.+|+=........+-||.||+++++.|+.+-.+=.+|.-+.|..
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466778888888871 233333334444445666777788899999999999999987655555555555443
No 17
>PHA01750 hypothetical protein
Probab=43.12 E-value=1.2e+02 Score=25.23 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007045 568 ELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 611 (620)
Q Consensus 568 e~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 611 (620)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 56778888888888889999988888776654
No 18
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.22 E-value=92 Score=30.78 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007045 534 EVDLLSSVTKRLSELEEKVDTLQ-----------AKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 602 (620)
Q Consensus 534 ~~~~~~~~~~r~~~lEekv~~L~-----------~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ 602 (620)
+.+++..+-.|+-.||+||+.|. ..--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 45566666666666666665543 2222456666663 55556777777776665555553333344444
Q ss_pred HHHHHH
Q 007045 603 AYIDRQ 608 (620)
Q Consensus 603 ayie~~ 608 (620)
+.|.++
T Consensus 149 ~~~~~~ 154 (189)
T TIGR02132 149 ETIQKQ 154 (189)
T ss_pred HHHHHH
Confidence 444443
No 19
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.17 E-value=87 Score=39.24 Aligned_cols=47 Identities=30% Similarity=0.413 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 007045 538 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL---LHAAVCRVDALEAELIATKKALH 592 (620)
Q Consensus 538 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~---L~aa~~RvdaLE~eL~~TKKaL~ 592 (620)
+..-++.++.|++++.+++ |+|+| |+.++.+.+..|++|..+.+||.
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~ 492 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKALL 492 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566899999999999998 77887 89999999999999999777763
No 20
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=42.11 E-value=69 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007045 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (620)
Q Consensus 86 ~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (620)
+.++++++.. |. .++ ..+.+.|+++++|++.|...+.+
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4555665554 33 344 47889999999999999988753
No 21
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.18 E-value=1.5e+02 Score=33.65 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=50.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007045 533 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLH--AAV-----CRVDALEAELIATKKALHEALMRQEDLLAYI 605 (620)
Q Consensus 533 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~--aa~-----~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 605 (620)
+..|.+..++-++.+|+.+++.|...-...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998776666666666643 111 2344555677777777766665555555554
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.13 E-value=1.3e+02 Score=35.61 Aligned_cols=65 Identities=29% Similarity=0.381 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDL 601 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El 601 (620)
...+..+.+++.+||+..+.|..|=...|.+ +-+..-..+++.++.+|.+.+..+.....+-+++
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998888764 2444455555555555555555444443333333
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.47 E-value=1.1e+02 Score=24.68 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007045 576 RVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 610 (620)
Q Consensus 576 RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 610 (620)
||+.||.+|-+-+-.+...=...++|-+.||+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333333444444444443
No 24
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=36.22 E-value=1.5e+02 Score=29.95 Aligned_cols=78 Identities=29% Similarity=0.328 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 610 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 610 (620)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|++|..+--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988853333 44567888999999999999999999999999999989999987764
Q ss_pred hh
Q 007045 611 AK 612 (620)
Q Consensus 611 ~k 612 (620)
.+
T Consensus 111 ~~ 112 (204)
T PF10368_consen 111 EK 112 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 25
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.03 E-value=92 Score=26.19 Aligned_cols=52 Identities=19% Similarity=0.443 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Q 007045 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARK---FDIDKAKHMWAEMLQWR 136 (620)
Q Consensus 85 ~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArk---fDvekA~~~l~~~l~WR 136 (620)
...+.+|-...-.+...|...+|++.+-+||.-.. |++..--..|++|+.|-
T Consensus 18 ~d~~~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 18 KDDKTELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred CChHHHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 34455677777777778988999999999998654 66666667788888774
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.95 E-value=2.1e+02 Score=30.79 Aligned_cols=75 Identities=31% Similarity=0.336 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007045 537 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 611 (620)
Q Consensus 537 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 611 (620)
.+-.+..|.+.|++.+..|...+.++=..--+-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+..
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888888888887755222244566666777777777666666555544444455555444433
No 27
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.77 E-value=3e+02 Score=29.44 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007045 538 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 611 (620)
Q Consensus 538 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 611 (620)
+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|+..+|++....--| ||.+=|+..+.+
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466678899999998874 4788888766 6677779999999999999988775 566666666543
No 28
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=32.92 E-value=2.5e+02 Score=31.46 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=62.3
Q ss_pred CCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCC---CCCc-----
Q 007045 168 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV---NFSK----- 239 (620)
Q Consensus 168 Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gl---s~sk----- 239 (620)
|....|++++-+|... .+.+.|+++++....+ ..--++|++-.|+ .+..
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~----------------~G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR----------------KGYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh----------------CCcEEEEECCCCCCCCccCCCceee
Confidence 4456799999998865 3667899988764322 1245678898887 2221
Q ss_pred -hHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHH
Q 007045 240 -NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT 278 (620)
Q Consensus 240 -~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~l 278 (620)
-.-+-++.+++.+...||.+ +++.+--+.+-.++||-
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nY 215 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNY 215 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHH
Confidence 12456788888899999998 88999998888888873
No 29
>PRK09039 hypothetical protein; Validated
Probab=32.80 E-value=3.5e+02 Score=29.42 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 007045 476 AVMAFFMMFVTLFRSVAYRV 495 (620)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~ 495 (620)
.|+.||+.||.+.-+|.+.-
T Consensus 28 ~~~~f~l~~f~~~q~fLs~~ 47 (343)
T PRK09039 28 LVIMFLLTVFVVAQFFLSRE 47 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34457778887777776553
No 30
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=32.37 E-value=1.8e+02 Score=35.04 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Q 007045 546 SELEEKVDTLQAKPSEMPYE---KEELLHAAVCRVDALEAELIATKKALHEALMRQ-EDLLAYIDRQE 609 (620)
Q Consensus 546 ~~lEekv~~L~~KP~~mP~E---KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ-~El~ayie~~k 609 (620)
.++++-+..++-..-.+|.. -++++++--.|++.++++++.|++.|.+.+.+- ++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888778764 468999999999999999999999999876653 45555544444
No 31
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=2.1e+02 Score=28.27 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHh
Q 007045 550 EKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHE---ALMRQEDLLAYIDRQEEA 611 (620)
Q Consensus 550 ekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~---al~kQ~El~ayie~~k~~ 611 (620)
|-|+...+||.--+.++..+|+...---+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 45778889999999999999999999999999999999999986 456777888888776543
No 32
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.36 E-value=2.5e+02 Score=32.28 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHH
Q 007045 537 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKA--------------LHEALMRQEDL 601 (620)
Q Consensus 537 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKa--------------L~~al~kQ~El 601 (620)
+...+.+||...|+.-.. .++=|+.+-.+|..||.||..|++- |.+.|.+|.|=
T Consensus 442 Ec~aL~~rL~~aE~ek~~-----------l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKES-----------LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666664444 3455899999999999999999984 55666666653
No 33
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.18 E-value=1.9e+02 Score=27.47 Aligned_cols=69 Identities=26% Similarity=0.288 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC---ChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEM---PYEKEELL---HAAVCRVDALEAELIATKKALHEALMRQEDLLA 603 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~m---P~EKEe~L---~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~a 603 (620)
..++.++-++++.||..|..+..+=.+. ..+.+... -+.-+||..||.||..+-+.|-+|..|=.+.-.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888777776553322 22333322 135578999999999999999999877655433
No 34
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=31.05 E-value=42 Score=25.29 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 007045 585 IATKKALHEALMRQEDLLAYIDRQE 609 (620)
Q Consensus 585 ~~TKKaL~~al~kQ~El~ayie~~k 609 (620)
+.+|++|. +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788886 67999999997665
No 35
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=30.89 E-value=4e+02 Score=25.11 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007045 541 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 609 (620)
Q Consensus 541 ~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 609 (620)
++..-..+|.-++.| |.+..--|+- ..||+.||.|+...-+-|.+++.+=++|++-|+..-
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQ----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555 4444333332 289999999999999999999999999999887653
No 36
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.15 E-value=3.2e+02 Score=32.72 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007045 534 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL----LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 608 (620)
Q Consensus 534 ~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~----L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 608 (620)
+.+...+=++|.-.+|+.=.+=+-.=+.--.|.+++ +++|+.++..|++||+.+||-|.++.---+-|...+|++
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344555556666655554332111111111133322 579999999999999999999988765545555555443
No 37
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=28.56 E-value=56 Score=30.99 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=49.9
Q ss_pred ccCccChhhh--hccccchhhhhhccccccchhhccccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 007045 27 SDFENSEDER--RTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPER 104 (620)
Q Consensus 27 ~~~~~~e~~~--~~~~~~~k~~a~~~s~~~~~sl~k~~~~r~~~~~v~s~~ied~~d~eE~~al~efRq~L~~~~~LP~~ 104 (620)
.+...-+|++ ..-+.+... .-....++++.|.+|| .+..+-.-.++++..+++..+...+...... . ..
T Consensus 53 ~~~~~ldD~~~a~~~~~~~~~-~~~g~~~I~~~L~~kG----i~~~~I~~~l~~~~~d~~e~a~~~~~k~~~~---~-~~ 123 (157)
T PRK00117 53 KEEGLLDDERFAESFVRSRAR-KGYGPRRIRQELRQKG----VDREIIEEALAELDIDWEELARELARKKFRR---P-LP 123 (157)
T ss_pred HHcCCCCHHHHHHHHHHHHHh-CCchHHHHHHHHHHcC----CCHHHHHHHHHHcCccHHHHHHHHHHHHcCC---C-CC
Confidence 3344566666 232333311 1123456889999998 3433333334444322222222323222211 1 11
Q ss_pred CC--cHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007045 105 HD--DYHMMLRFLKARKFDIDKAKHMWAEM 132 (620)
Q Consensus 105 ~d--D~~~LLRFLrArkfDvekA~~~l~~~ 132 (620)
.+ .-.-+.+||..++|+.+.+.+.+...
T Consensus 124 ~~~~~k~Ki~~~L~rkGF~~~~I~~~l~~~ 153 (157)
T PRK00117 124 DDAKEKAKLVRFLARRGFSMDVIQRVLRNA 153 (157)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 11 12468999999999999888777654
No 38
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.44 E-value=1.4e+02 Score=25.65 Aligned_cols=31 Identities=39% Similarity=0.447 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007045 579 ALEAELIATKKALHEALMRQEDLLAYIDRQE 609 (620)
Q Consensus 579 aLE~eL~~TKKaL~~al~kQ~El~ayie~~k 609 (620)
.|+-.|...+..|.++...|.+|.+.|++..
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~ 41 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLN 41 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666554
No 39
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.75 E-value=4.4e+02 Score=27.35 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007045 543 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 597 (620)
Q Consensus 543 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k 597 (620)
..+.-+|..+..-+. ..+=+..-||||.|..||..-|++-......-......
T Consensus 98 e~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~ 150 (239)
T PF05276_consen 98 EMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARI 150 (239)
T ss_pred HHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778887776444 56889999999999999998888887777665544333
No 40
>PHA00687 hypothetical protein
Probab=26.92 E-value=1.4e+02 Score=22.95 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=21.7
Q ss_pred CCCChhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 007045 560 SEMPYEKEELLHAA----------VCRVDALEAELIATKK 589 (620)
Q Consensus 560 ~~mP~EKEe~L~aa----------~~RvdaLE~eL~~TKK 589 (620)
...|+|--.+|+.| +.||++||.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35788888888766 6788888876655554
No 41
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=26.70 E-value=4.2e+02 Score=28.00 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAA 573 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa 573 (620)
...++-.+-|+..|+..++..+.+-+++.+.+++.|-+.
T Consensus 51 ~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 51 DAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 345677889999999999999999999999988887643
No 42
>PRK14136 recX recombination regulator RecX; Provisional
Probab=25.92 E-value=48 Score=35.53 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 007045 108 YHMMLRFLKARKFDIDKAKHMWAE 131 (620)
Q Consensus 108 ~~~LLRFLrArkfDvekA~~~l~~ 131 (620)
..-+.|||..++|+.+...+.|+.
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 357789999999999988777754
No 43
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.91 E-value=3.2e+02 Score=30.72 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007045 537 LLSSVTKRLSELEEKVDTLQA--KPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 591 (620)
Q Consensus 537 ~~~~~~~r~~~lEekv~~L~~--KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL 591 (620)
++..+-++|.+|+..+..|.. +...+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777766665 4567889999988888777777777766555444
No 44
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.61 E-value=2.9e+02 Score=27.04 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=67.6
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhhHH-HHHH
Q 007045 465 TPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDLLS-SVTK 543 (620)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 543 (620)
+...+..++-...+-++.++..++..+...+ +.+..-... .+ +..-+++..+.+. .+-+
T Consensus 47 a~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~~---------vd----------~~~~a~i~e~~L~~el~~ 106 (204)
T PF04740_consen 47 AYDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQSE---------VD----------SSSNAIIDEDFLESELKK 106 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH---------Hc----------ccccccccHHHHHHHHHH
Confidence 4455567777778888888888888776666 332221111 00 1111347777777 6678
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007045 544 RLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 597 (620)
Q Consensus 544 r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k 597 (620)
.|.++++.+..+...-..+-.+=.+++.-..-..+.+...+...|+-|.+++.|
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lek 160 (204)
T PF04740_consen 107 KLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEK 160 (204)
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887766554444444553333333455666666667666666655
No 45
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=25.25 E-value=2.2e+02 Score=29.44 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhH-----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHH
Q 007045 538 LSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAELIATK-------KALHEALMRQEDLLAYI 605 (620)
Q Consensus 538 ~~~~~~r~~~lEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdaLE~eL~~TK-------KaL~~al~kQ~El~ayi 605 (620)
-..|++.|+||... ....++.+-|.| ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 45566666666655 233445454533 3445666777777777666544 45666666666676666
Q ss_pred HHHHH
Q 007045 606 DRQEE 610 (620)
Q Consensus 606 e~~k~ 610 (620)
+..|+
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 46
>PRK14137 recX recombination regulator RecX; Provisional
Probab=24.73 E-value=1.3e+02 Score=30.06 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007045 109 HMMLRFLKARKFDIDKAKHMWAEMLQ 134 (620)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l~~~l~ 134 (620)
.-+.+||..++|+.+.+...+.+.+.
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~ 181 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAA 181 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 46889999999999999888887644
No 47
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=24.64 E-value=2.3e+02 Score=29.60 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHHHHHHhhhh
Q 007045 594 ALMRQEDLLAYIDRQEEAKFR 614 (620)
Q Consensus 594 al~kQ~El~ayie~~k~~k~~ 614 (620)
+=.-|+-+.+++||+++||-+
T Consensus 250 s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred CHHHHHHHHHHHHHHhhcccc
Confidence 335588899999999988854
No 48
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.61 E-value=2.4e+02 Score=26.49 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007045 539 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 602 (620)
Q Consensus 539 ~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ 602 (620)
....+|+.+.|..+..|...-. -=..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|-
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999988876533 11344455678899999999999999999998875444333
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.47 E-value=5.3e+02 Score=26.08 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007045 542 TKRLSELEEKVDTLQAKPSEM-------PYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAK 612 (620)
Q Consensus 542 ~~r~~~lEekv~~L~~KP~~m-------P~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k 612 (620)
-.||.+||..+..|..+-.++ =.|..+-|.++=.-|..|+.|...-++-|..+-.+-++|-+-++.+++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444333332 22334444455555666666666666666666555555666666666543
No 50
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=24.41 E-value=2.2e+02 Score=28.22 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 007045 586 ATKKALHEALMR 597 (620)
Q Consensus 586 ~TKKaL~~al~k 597 (620)
+|.--|.+|.-|
T Consensus 142 ~~~~~~~~~~~~ 153 (189)
T TIGR02132 142 KTQDELKETIQK 153 (189)
T ss_pred cchhHHHHHHHH
Confidence 344444554443
No 51
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.94 E-value=98 Score=30.33 Aligned_cols=32 Identities=38% Similarity=0.417 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007045 565 EKEELLHAAVCRVDALEAELIATKKALHEALMR 597 (620)
Q Consensus 565 EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k 597 (620)
|=|..||.|+.|-=-||.||+. |-.|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999977 8888877755
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.70 E-value=2.2e+02 Score=32.52 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 609 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 609 (620)
.+.++.+...+.+|++++..|..+=.+.=...++ ++....|+..++.++...+..|++...+..+|-+=|++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888887775544344444 7778899999999999999998887776666666665554
No 53
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=23.45 E-value=4e+02 Score=27.61 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhc---------CCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007045 538 LSSVTKRLSELEEKVDTLQ---------AKP-SEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 607 (620)
Q Consensus 538 ~~~~~~r~~~lEekv~~L~---------~KP-~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~ 607 (620)
...++++...+|.+|..|. +|| -+|=..=+++|++.-.||..||+++..+|.--.+||-.-++|.+-|=.
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665 333 134445688999999999999999999999999999999999999866
Q ss_pred HHHh
Q 007045 608 QEEA 611 (620)
Q Consensus 608 ~k~~ 611 (620)
+...
T Consensus 224 ~R~~ 227 (239)
T PF05276_consen 224 QRRR 227 (239)
T ss_pred HHhh
Confidence 5544
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.14 E-value=1.1e+02 Score=28.53 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 007045 468 GIRARIWAAVMAFFMMFVTLFRSVAYRVTHRI 499 (620)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (620)
+-..-|+.|+||-|+++..++-++.+|+.|+.
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34688999999999999888888888877664
No 55
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=22.93 E-value=4e+02 Score=29.25 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=44.5
Q ss_pred cCcccccCCCCCCcEEEEEcCccCcchhhhcc-cHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCCCC
Q 007045 160 YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVT-TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFS 238 (620)
Q Consensus 160 ~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~-t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls~s 238 (620)
.||.+.|.|++|++.++.-.|+-|..-.++-. +...|-+..+......+.. .. -..-+|||++.-+-.
T Consensus 205 ~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k----------~~-l~~~v~VD~SH~ns~ 273 (349)
T PRK09261 205 APHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEK----------AG-LPPRIMIDCSHANSG 273 (349)
T ss_pred CCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH----------cC-CCCCEEEECCCcccC
Confidence 57778899999999999999998876555533 3444555444433333321 11 145689999988554
No 56
>PF15294 Leu_zip: Leucine zipper
Probab=22.71 E-value=2.2e+02 Score=30.20 Aligned_cols=61 Identities=36% Similarity=0.468 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 007045 543 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614 (620)
Q Consensus 543 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 614 (620)
+-+.+||.++..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ ++..++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 55778899988884 344566777777889999999998 5677888888 6666665566655
No 57
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.68 E-value=2.4e+02 Score=27.64 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007045 537 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELL----HAAVCRVDALEAELIATKKALHEALMRQE 599 (620)
Q Consensus 537 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L----~aa~~RvdaLE~eL~~TKKaL~~al~kQ~ 599 (620)
.+.+++++|..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~ 184 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4567889999999999998887654444444332 222233445555555533222 2444443
No 58
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.62 E-value=77 Score=30.68 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhh-HHHHHHHHHHH
Q 007045 470 RARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDL-LSSVTKRLSEL 548 (620)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~l 548 (620)
..+++..+++|++-++-+-+.+..++++-+..+..... . . +.+++. -...-+-.++.
T Consensus 10 ~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~-------~-~--------------L~~Ae~~k~eAe~l~a~y 67 (155)
T PRK06569 10 YSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQ-------D-N--------------ITQADTLTIEVEKLNKYY 67 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------h-H--------------HHHHHHHHHHHHHHHHHH
Confidence 57888888888888887888777777655543321100 0 0 001111 11112233445
Q ss_pred HHHHHHhcCCCCCCChh-HHHHHHHHHHHHHHHHHHHHH
Q 007045 549 EEKVDTLQAKPSEMPYE-KEELLHAAVCRVDALEAELIA 586 (620)
Q Consensus 549 Eekv~~L~~KP~~mP~E-KEe~L~aa~~RvdaLE~eL~~ 586 (620)
|+.+..-..+-.+|=.| .+++-.+|..+.+++|++|..
T Consensus 68 e~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 68 NEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556566 556666666666666666643
No 59
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=21.96 E-value=1.5e+02 Score=29.70 Aligned_cols=31 Identities=45% Similarity=0.447 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 007045 564 YEKEELLHAAVCRVDALEAE-------LIATKKALHEA 594 (620)
Q Consensus 564 ~EKEe~L~aa~~RvdaLE~e-------L~~TKKaL~~a 594 (620)
.||-.||.+|=.||+.|... |++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999865 55666665543
No 60
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=21.58 E-value=1.8e+02 Score=31.78 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=45.1
Q ss_pred hcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCCCC
Q 007045 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFS 238 (620)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls~s 238 (620)
..||++.|.|++|++.++...|+-|..-.++-.....|-+..+......+.. .+.. -.+|||++.-+-.
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~~----------~~lp-~~vmVD~SH~ns~ 267 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLEK----------AGLP-PHLMIDFSHGNSN 267 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHHH----------cCCC-CeEEEeCCCcccc
Confidence 4788999999999999999999987665544332244444444443333321 1222 3589999988554
Q ss_pred c
Q 007045 239 K 239 (620)
Q Consensus 239 k 239 (620)
+
T Consensus 268 k 268 (344)
T TIGR00034 268 K 268 (344)
T ss_pred c
Confidence 3
No 61
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=21.07 E-value=2.2e+02 Score=26.08 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=33.2
Q ss_pred EEEeCCCCCCCchHHHHHHHHHHhhcc-----ccc--ccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchh
Q 007045 228 SILDVQGVNFSKNARELILRLQKIDGD-----NYP--ETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQS 300 (620)
Q Consensus 228 vIiDl~Gls~sk~~~~~ik~l~kilq~-----~YP--ErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~ 300 (620)
+|||++|..+...+- .+.++|+. +.| ++=..++|||+ ++|.|.|+++..
T Consensus 2 ~viDA~~~~lGRlAs----~iA~~L~gKhKp~y~p~~d~Gd~VvViNa--------------------~~i~~tG~k~~~ 57 (114)
T cd00392 2 HVIDAKGQVLGRLAS----KVAKLLLGKHKPTYTPHVDCGDYVVVVNA--------------------EKIVITGKKWRQ 57 (114)
T ss_pred EEEeCCCCchHHHHH----HHHHHHcCCCCCCcCCCccCCCEEEEEec--------------------cEEEEeCchhhc
Confidence 588999976655443 34444443 444 35667999998 689999886543
No 62
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=20.97 E-value=2.4e+02 Score=27.15 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALM 596 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~ 596 (620)
..+|..+.+-|. ||+..+.-+|- +-.-=+|-|+=|+--|+-|=.+|++-|+|.+.|+.
T Consensus 2 keE~~~~~~~l~--~Ek~eHaKTK~--lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~ 59 (153)
T PF15175_consen 2 KEEFEAVEKKLE--EEKAEHAKTKA--LLAKESEKLQFALGEIEILSKQLEREKLAFEKALG 59 (153)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHH--HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888887 78888777762 22333578999999999999999999999988864
No 63
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.84 E-value=9.1e+02 Score=24.75 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007045 536 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 591 (620)
Q Consensus 536 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL 591 (620)
..+..+..+..++|++...--.+-. |++-..++.|+..||..+...+..+
T Consensus 59 ~~~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 59 RKLEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888876666644 9999999999998887766555443
No 64
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=20.37 E-value=4.5e+02 Score=29.54 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 007045 471 ARIWAAVMAFFMMFVTLFRS 490 (620)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~ 490 (620)
+.+++.++++|++++++|-.
T Consensus 69 gFfvaflvslVL~~l~~f~l 88 (429)
T PF12297_consen 69 GFFVAFLVSLVLTWLCFFLL 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776666653
No 65
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.35 E-value=4e+02 Score=28.87 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=45.4
Q ss_pred chhhhHHHHHH----HHHHHHHHHHHhc-----CCCCCCChhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007045 533 TEVDLLSSVTK----RLSELEEKVDTLQ-----AKPSEMPYEKE-----ELLHAAVCRVDALEAELIATKKALHEA 594 (620)
Q Consensus 533 ~~~~~~~~~~~----r~~~lEekv~~L~-----~KP~~mP~EKE-----e~L~aa~~RvdaLE~eL~~TKKaL~~a 594 (620)
.+.|.|.-|+. |-+.|+.+..++. .--+.+|++++ .+|..+-.|.+.|..|+..-+.=|.|+
T Consensus 23 ~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 23 SERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667665544 5557888888777 44445888877 889999999999999987766554443
No 66
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.22 E-value=5.1e+02 Score=24.36 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HhHHHHHHHHHHHHHhh
Q 007045 563 PYEKEELLHAAVCRVDALEAELI----ATKKALHEAL----MRQEDLLAYIDRQEEAK 612 (620)
Q Consensus 563 P~EKEe~L~aa~~RvdaLE~eL~----~TKKaL~~al----~kQ~El~ayie~~k~~k 612 (620)
|.=||+++..--..+..+|.||. -.||++.+.- .....|-++++..+...
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r 72 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQER 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 45689999999999999999886 4788888865 55566778887776544
No 67
>PF14282 FlxA: FlxA-like protein
Probab=20.18 E-value=4.2e+02 Score=23.76 Aligned_cols=52 Identities=15% Similarity=0.380 Sum_probs=38.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCCh-hHHHHHHHHHHHHHHHHHHHH
Q 007045 533 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPY-EKEELLHAAVCRVDALEAELI 585 (620)
Q Consensus 533 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~-EKEe~L~aa~~RvdaLE~eL~ 585 (620)
.....+..+-+++.+|.+++..|... ..|++ +|.+....=-.-|..||+.|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-SDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999995 23454 566555555557778888775
No 68
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=20.11 E-value=98 Score=28.99 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc
Q 007045 534 EVDLLSSVTKRLSELEEKVDTLQ 556 (620)
Q Consensus 534 ~~~~~~~~~~r~~~lEekv~~L~ 556 (620)
-+-.+-.+|+||..||.||+.|-
T Consensus 84 iAVLLddiLqRl~kLE~kvd~lv 106 (138)
T PF15027_consen 84 IAVLLDDILQRLVKLESKVDNLV 106 (138)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHe
Confidence 34457889999999999999863
No 69
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.01 E-value=5.3e+02 Score=27.76 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHH
Q 007045 537 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDA--------------LEAELIATKKALHEALMRQEDLL 602 (620)
Q Consensus 537 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~Rvda--------------LE~eL~~TKKaL~~al~kQ~El~ 602 (620)
.+-.+.++.+.|+.++..|..-+.+|=.=.-+.|+.+=..+.. ++.+|..-+..+.+.-.+..|+.
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778889999999999888887622112233333344444 44455555555555555555555
Q ss_pred HHHHHHHH
Q 007045 603 AYIDRQEE 610 (620)
Q Consensus 603 ayie~~k~ 610 (620)
+-|-..++
T Consensus 253 ~~I~~ae~ 260 (312)
T smart00787 253 TEIAEAEK 260 (312)
T ss_pred HHHHHHHH
Confidence 55544443
Done!