Query 007045
Match_columns 620
No_of_seqs 341 out of 1565
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 15:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1E-54 3.5E-59 457.8 21.5 270 70-342 26-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 7.4E-54 2.5E-58 444.9 22.8 268 72-342 19-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 2.1E-44 7.3E-49 389.5 24.8 244 72-322 1-248 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 3.2E-43 1.1E-47 369.5 20.4 231 75-321 47-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 4.2E-43 1.4E-47 356.6 18.2 226 80-321 4-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.0 2.2E-10 7.7E-15 116.6 6.8 135 157-311 8-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.7 4.7E-09 1.6E-13 108.7 4.2 131 161-311 31-163 (290)
8 2hy6_A General control protein 70.4 1.2 4E-05 30.8 0.6 16 543-558 1-16 (34)
9 2bni_A General control protein 70.2 1.2 4E-05 30.8 0.6 16 543-558 1-16 (34)
10 3c3g_A Alpha/beta peptide with 69.9 5.4 0.00018 27.3 3.7 14 544-557 1-14 (33)
11 2oxj_A Hybrid alpha/beta pepti 68.0 6.1 0.00021 27.2 3.7 30 543-580 1-30 (34)
12 1uo4_A General control protein 67.2 5.7 0.0002 27.4 3.4 14 544-557 2-15 (34)
13 3c3f_A Alpha/beta peptide with 67.1 8 0.00027 26.6 4.1 15 543-557 1-15 (34)
14 2wq1_A General control protein 67.0 8.1 0.00028 26.5 4.1 14 544-557 1-14 (33)
15 1m7k_A Silencer of death domai 65.6 12 0.00041 32.3 6.1 68 533-607 21-97 (99)
16 3a8y_C BAG family molecular ch 63.6 20 0.00068 32.8 7.4 68 535-609 33-109 (142)
17 3m48_A General control protein 62.3 7.5 0.00025 26.7 3.3 13 544-556 1-13 (33)
18 1kd8_A GABH AIV, GCN4 acid bas 58.9 12 0.00041 26.1 3.9 14 543-556 1-14 (36)
19 1m62_A BAG-family molecular ch 58.5 30 0.001 29.0 7.2 66 535-607 10-84 (87)
20 2dam_A ETEA protein; KIAA0887, 58.0 28 0.00096 27.6 6.6 45 78-130 12-56 (67)
21 1nkp_A C-MYC, MYC proto-oncoge 57.6 47 0.0016 27.7 8.3 66 543-608 16-85 (88)
22 1kd8_B GABH BLL, GCN4 acid bas 52.6 25 0.00087 24.5 4.6 16 543-558 1-16 (36)
23 1nkp_B MAX protein, MYC proto- 52.3 65 0.0022 26.2 8.3 63 543-605 12-77 (83)
24 2dhy_A CUE domain-containing p 50.3 21 0.00073 28.5 4.7 44 81-132 15-58 (67)
25 2r2v_A GCN4 leucine zipper; co 48.7 25 0.00087 24.2 4.1 16 543-558 1-16 (34)
26 1wgl_A TOLL-interacting protei 48.7 19 0.00063 28.0 4.0 39 86-132 11-49 (59)
27 2dal_A Protein KIAA0794; FAS a 44.4 49 0.0017 25.7 5.9 40 81-129 12-51 (62)
28 3htk_A Structural maintenance 41.2 1.1E+02 0.0039 23.0 7.8 46 566-611 10-55 (60)
29 1v92_A NSFL1 cofactor P47; 3-h 40.5 46 0.0016 23.7 4.9 37 84-129 5-41 (46)
30 1yke_B RNA polymerase II holoe 39.9 1.9E+02 0.0064 26.5 10.1 68 534-609 51-126 (151)
31 1uk5_A BAG-family molecular ch 39.2 66 0.0022 28.2 6.5 68 535-609 29-105 (111)
32 1ugo_A BCL2-associated athanog 38.7 44 0.0015 28.7 5.2 66 536-608 18-92 (99)
33 1ic2_A Tropomyosin alpha chain 38.0 81 0.0028 25.7 6.6 59 538-600 15-73 (81)
34 2p2u_A HOST-nuclease inhibitor 36.8 2.4E+02 0.008 26.2 10.5 69 530-611 10-78 (171)
35 3rrk_A V-type ATPase 116 kDa s 36.7 1.2E+02 0.0042 31.0 9.4 65 546-610 199-269 (357)
36 3etw_A Adhesin A; antiparallel 34.7 88 0.003 27.7 6.6 74 539-612 5-108 (119)
37 2q9q_C DNA replication complex 32.4 99 0.0034 29.3 7.3 26 561-586 20-45 (196)
38 1pl5_A Regulatory protein SIR4 32.0 69 0.0024 27.8 5.3 40 575-614 95-134 (142)
39 2oqq_A Transcription factor HY 30.5 35 0.0012 24.7 2.6 16 541-556 15-30 (42)
40 1ykh_B RNA polymerase II holoe 30.4 2.9E+02 0.01 24.5 12.1 67 534-608 51-125 (132)
41 1nyh_A Regulatory protein SIR4 29.7 78 0.0027 28.0 5.4 40 575-614 119-158 (166)
42 3e3v_A Regulatory protein RECX 27.8 35 0.0012 31.9 3.1 77 51-132 86-163 (177)
43 1j3a_A 50S ribosomal protein L 27.6 45 0.0015 30.5 3.7 46 228-302 2-47 (142)
44 1vq8_J 50S ribosomal protein L 26.7 48 0.0016 30.4 3.7 46 228-302 10-55 (145)
45 2dah_A Ubiquilin-3; UBA domain 26.5 1.4E+02 0.0048 22.4 5.7 38 86-132 11-48 (54)
46 2ke4_A CDC42-interacting prote 26.4 80 0.0027 26.9 4.8 46 548-594 41-88 (98)
47 3e21_A HFAF1, FAS-associated f 26.3 1.5E+02 0.005 21.7 5.6 37 84-128 5-41 (45)
48 4b6a_O 60S ribosomal protein L 25.5 60 0.002 31.3 4.2 48 226-302 5-52 (199)
49 2z5i_I TM, tropomyosin alpha-1 25.1 48 0.0017 23.8 2.6 20 571-590 20-39 (40)
50 1z96_A DNA-damage, UBA-domain 24.4 1.1E+02 0.0039 20.8 4.6 21 109-129 19-39 (40)
51 3u1c_A Tropomyosin alpha-1 cha 23.9 1.3E+02 0.0046 25.5 5.8 56 541-600 21-76 (101)
52 3hf0_A GCN4-PLI SIDE chain seq 23.8 1.5E+02 0.0051 19.8 4.5 28 566-593 6-33 (34)
53 1wr1_B Ubiquitin-like protein 23.6 1.4E+02 0.0047 22.9 5.2 38 85-131 18-55 (58)
54 2di0_A Activating signal coint 23.0 1.7E+02 0.006 23.5 5.9 43 81-131 10-52 (71)
55 3dfg_A Xcrecx, regulatory prot 22.6 45 0.0015 30.7 2.7 74 51-130 84-157 (162)
56 1vej_A Riken cDNA 4931431F19; 22.1 1.5E+02 0.0051 23.9 5.4 38 85-131 30-67 (74)
57 1hlo_A Protein (transcription 21.6 1.1E+02 0.0038 24.6 4.7 47 543-589 22-71 (80)
58 2ql2_B Neurod1, neurogenic dif 21.6 1.1E+02 0.0037 23.6 4.3 43 543-585 12-58 (60)
59 2dna_A Unnamed protein product 21.3 1.9E+02 0.0065 22.9 5.7 38 85-131 20-57 (67)
60 4a17_I RPL13A, 60S ribosomal p 21.0 68 0.0023 30.9 3.7 46 228-302 6-51 (198)
61 4aya_A DNA-binding protein inh 20.7 1.3E+02 0.0043 25.8 4.9 45 542-586 34-82 (97)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1e-54 Score=457.81 Aligned_cols=270 Identities=36% Similarity=0.637 Sum_probs=246.1
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccc
Q 007045 70 RVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFE 149 (620)
Q Consensus 70 ~v~s~~ied~~d~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~g~d~i~~d~~ 149 (620)
..+++...+ ++++|+++|++||+||.+++ ++.+.|| .+||||||||+||+++|.+||+++++||+++++|.+..++.
T Consensus 26 ~~~~g~~~~-lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~ 102 (320)
T 3q8g_A 26 NALPGTPGN-LTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYE 102 (320)
T ss_dssp TSCTTSTTC-CCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred CCCCCCCCC-CCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 345555555 47889999999999999988 4667777 49999999999999999999999999999999999987765
Q ss_pred hH------HHHHHHhhcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCC
Q 007045 150 FK------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHI 223 (620)
Q Consensus 150 ~~------el~~v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i 223 (620)
++ +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.+.++|+...+..+
T Consensus 103 ~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~v 182 (320)
T 3q8g_A 103 NNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLI 182 (320)
T ss_dssp HTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCC
T ss_pred cccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCc
Confidence 54 445677899999999999999999999999999998888899999999999999999888888888888889
Q ss_pred CCeEEEEeCCCCCCCchH--HHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhH
Q 007045 224 DSSTSILDVQGVNFSKNA--RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 301 (620)
Q Consensus 224 ~~~tvIiDl~Gls~sk~~--~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~ 301 (620)
+++++|+|++|+++++.. ..+++.+++++|+|||+||+++||||+|++|.++|+++++||+++|++||+|+++++.+.
T Consensus 183 e~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 183 ETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 999999999999887654 688999999999999999999999999999999999999999999999999999888889
Q ss_pred HHhhcCcCCCccccCCCcCcCC-CCCCccCCCCCCCCHHHHH
Q 007045 302 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 342 (620)
Q Consensus 302 L~e~Id~s~LP~eyGGt~~~~~-~ggcl~~~~gpW~~p~~~k 342 (620)
|.++||+++||++|||+++|.+ +|||+.++.|||+||++++
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 9999999999999999999976 7999999999999998875
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=7.4e-54 Score=444.95 Aligned_cols=268 Identities=37% Similarity=0.676 Sum_probs=243.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchH
Q 007045 72 SSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK 151 (620)
Q Consensus 72 ~s~~ied~~d~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~g~d~i~~d~~~~ 151 (620)
++....+ ++++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||+++++||++++++.+..++.+.
T Consensus 19 ~~~~~~~-l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~ 95 (296)
T 1aua_A 19 LPGTPGN-LDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYD 95 (296)
T ss_dssp CTTSTTT-CCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCT
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccC
Confidence 3444344 47788999999999999887 4677777 5999999999999999999999999999999999887766554
Q ss_pred HHHHHHhhcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEe
Q 007045 152 EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILD 231 (620)
Q Consensus 152 el~~v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiD 231 (620)
+...+.++++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.++++|+...+.+++++++|+|
T Consensus 96 ~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D 175 (296)
T 1aua_A 96 EKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMD 175 (296)
T ss_dssp THHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred cHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence 44556788999999999999999999999999999888889999999999999999998888998888888999999999
Q ss_pred CCCCCCCchH--HHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCcC
Q 007045 232 VQGVNFSKNA--RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAR 309 (620)
Q Consensus 232 l~Gls~sk~~--~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s 309 (620)
++|+++++.. .++++.+++++|+|||+||+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++||++
T Consensus 176 ~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~ 255 (296)
T 1aua_A 176 LKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAE 255 (296)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHh
Confidence 9999887654 68899999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCccccCCCcCcCC-CCCCccCCCCCCCCHHHHH
Q 007045 310 ELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 342 (620)
Q Consensus 310 ~LP~eyGGt~~~~~-~ggcl~~~~gpW~~p~~~k 342 (620)
+||++|||+++|.. +|||+.++.|||++|++++
T Consensus 256 ~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 256 NLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred hCcHHhCCCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 99999999999976 6899999999999999875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.1e-44 Score=389.51 Aligned_cols=244 Identities=28% Similarity=0.450 Sum_probs=214.8
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccch
Q 007045 72 SSVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (620)
Q Consensus 72 ~s~~ied~~d~eE~~al~efRq~L~~~~-~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~g~d~i~~d~~~ 150 (620)
||+...++ +++|+++|++||++|.+.. ++| ..|| .+||||||||+||+++|.+||+++++||++++++.+..+ ..
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QP 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CC
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CC
Confidence 44554444 7899999999999998863 455 4666 599999999999999999999999999999999888763 33
Q ss_pred HHHHHHHhhcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEE
Q 007045 151 KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSIL 230 (620)
Q Consensus 151 ~el~~v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIi 230 (620)
++ .+.++++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.++..+. .++...+.+++++++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEE
Confidence 33 3566788899999999999999999999999988888999999999999999998643 34444566789999999
Q ss_pred eCCCCCCCch---HHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcC
Q 007045 231 DVQGVNFSKN---ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIID 307 (620)
Q Consensus 231 Dl~Gls~sk~---~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id 307 (620)
|++|+++++. ..++++.+++++|+|||+||+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 9999987654 6788999999999999999999999999999999999999999999999999999888889999999
Q ss_pred cCCCccccCCCcCcC
Q 007045 308 ARELPEFLGGTCNCA 322 (620)
Q Consensus 308 ~s~LP~eyGGt~~~~ 322 (620)
+++||++|||+++++
T Consensus 234 ~~~LP~~yGG~~~~~ 248 (403)
T 1olm_A 234 PDQVPVEYGGTMTDP 248 (403)
T ss_dssp GGGSBGGGTSSBCCT
T ss_pred hhhCchhhCCCcCCC
Confidence 999999999999985
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.2e-43 Score=369.46 Aligned_cols=231 Identities=21% Similarity=0.350 Sum_probs=195.2
Q ss_pred cccCCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Q 007045 75 SIEDVRDVEE--LQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGV 141 (620)
Q Consensus 75 ~ied~~d~eE--~~al~efRq~L~~~~~LP-----------~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~g~ 141 (620)
+.+++++.++ .++|++||+||.+++++| .++|| .+|+||||||+||+++|.+||.++++||++++.
T Consensus 47 a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~ 125 (316)
T 3hx3_A 47 AKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE 125 (316)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch
Confidence 3455555444 689999999999999875 45677 599999999999999999999999999999983
Q ss_pred CccccccchHHHHHHHh-hcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhc
Q 007045 142 DTIMEDFEFKEINEVLS-YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAK 220 (620)
Q Consensus 142 d~i~~d~~~~el~~v~k-~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~ 220 (620)
++.+..++++..+++ .++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. ..
T Consensus 126 --~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~~ 191 (316)
T 3hx3_A 126 --LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------EE 191 (316)
T ss_dssp --GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------HH
T ss_pred --hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------cc
Confidence 344445566655554 4567789999999999999999999987 48899999999999998753 23
Q ss_pred CCCCCeEEEEeCCCCCCCch---HHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCC
Q 007045 221 RHIDSSTSILDVQGVNFSKN---ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNK 297 (620)
Q Consensus 221 ~~i~~~tvIiDl~Gls~sk~---~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~ 297 (620)
.+++|+++|+|++|+++++. ....++.+++++|+|||+||+++||||+|++|.++|+++||||+++|++||+|++++
T Consensus 192 ~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~ 271 (316)
T 3hx3_A 192 TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD 271 (316)
T ss_dssp HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC
T ss_pred CCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC
Confidence 45789999999999988653 457899999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHhhcCcCCCccccCCCcCc
Q 007045 298 YQSKLLEIIDARELPEFLGGTCNC 321 (620)
Q Consensus 298 ~~~~L~e~Id~s~LP~eyGGt~~~ 321 (620)
+ +.|.++||+++||++|||++++
T Consensus 272 ~-~~L~~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 272 L-SGFYQEIDENILPSDFGGTLPK 294 (316)
T ss_dssp C-HHHHHHSCGGGSBGGGTSSBCC
T ss_pred H-HHHHhhCCHhhCcHhhCCCCCC
Confidence 6 6899999999999999999986
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=4.2e-43 Score=356.65 Aligned_cols=226 Identities=25% Similarity=0.357 Sum_probs=190.8
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHH
Q 007045 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (620)
Q Consensus 80 ~d~eE~~al~efRq~L~~~~--~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~g~d~i~~d~~~~el~~v~ 157 (620)
+++.|+++|++||+++.+++ ++|...||. +|+|||||++||+++|.++|+++++||++++. +..++.++++....
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~-~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTDS-FLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCHH-HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 46778899999999999865 467777874 99999999999999999999999999999862 33333344444333
Q ss_pred h-hcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCC
Q 007045 158 S-YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVN 236 (620)
Q Consensus 158 k-~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls 236 (620)
+ .+..+++|+|++||||+|+++|++|+++ .+..++++++++.+|.++... ..++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCCC
Confidence 3 3456788999999999999999999987 478899999999999876541 22367999999999998
Q ss_pred CCch---HHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHHHhhcCcCCCcc
Q 007045 237 FSKN---ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 313 (620)
Q Consensus 237 ~sk~---~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s~LP~ 313 (620)
+++. ..++++.+++++|+|||+||+++||||+|++|.++|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 8764 4688999999999999999999999999999999999999999999999999999888889999999 99999
Q ss_pred ccCCCcCc
Q 007045 314 FLGGTCNC 321 (620)
Q Consensus 314 eyGGt~~~ 321 (620)
+|||++..
T Consensus 228 ~yGG~~~~ 235 (262)
T 1r5l_A 228 EYGGEEFS 235 (262)
T ss_dssp GGTCSSCC
T ss_pred hhCCCCCC
Confidence 99999764
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.02 E-value=2.2e-10 Score=116.65 Aligned_cols=135 Identities=12% Similarity=0.127 Sum_probs=108.4
Q ss_pred HhhcCcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCC
Q 007045 157 LSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVN 236 (620)
Q Consensus 157 ~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls 236 (620)
.+....+..|.|++||||+++.+.+++... .+++.++.|++..+++.. -...++|+|+.|++
T Consensus 8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~ 69 (256)
T 3pg7_A 8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTG 69 (256)
T ss_dssp HHHTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCC
T ss_pred HHcCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCC
Confidence 334444555899999999999999998765 477888777776666443 24789999999996
Q ss_pred CC-chHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHH-HHhcCChhhhcceEEeCCCchhHHHhhcCcCCC
Q 007045 237 FS-KNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 311 (620)
Q Consensus 237 ~s-k~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~l-VKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s~L 311 (620)
.. .+..++++.+..++...|...|+++||+|++++|+..|.. .++|.+.+...|++++++ ..+|.++|+.++|
T Consensus 70 ~~n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 70 PSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GGGCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred cccCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 54 4668899999999999999999999999999999977665 566777788899999966 4889999986655
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.72 E-value=4.7e-09 Score=108.66 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=97.2
Q ss_pred CcccccCCCCCCcEEEEEcCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCeEEEEeCCCCCCC-c
Q 007045 161 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVNFS-K 239 (620)
Q Consensus 161 p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~a~~~i~~~tvIiDl~Gls~s-k 239 (620)
..+..|.|++||||+++.+++++... .+.+.++-|++..+++.. -...++|+|+.|++.. .
T Consensus 31 ~f~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 31 IFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp TEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGC
T ss_pred eEEEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCC
Confidence 33445889999999999999998765 477777766666555433 2479999999999664 4
Q ss_pred hHHHHHHHHHHhhcccccccccEEEEEecChHHHHHH-HHHHhcCChhhhcceEEeCCCchhHHHhhcCcCCC
Q 007045 240 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 311 (620)
Q Consensus 240 ~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw-~lVKpFLd~kTr~KI~~lg~~~~~~L~e~Id~s~L 311 (620)
+..++++.+..++...|+..|+++||+|++.+|+..+ ...++|.+.+...|+.+++.. ..|..+++.+++
T Consensus 93 p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 93 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp CCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred ChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 6688999999999999999999999999999998754 566788888889999998653 448888887743
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=70.43 E-value=1.2 Score=30.77 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 007045 543 KRLSELEEKVDTLQAK 558 (620)
Q Consensus 543 ~r~~~lEekv~~L~~K 558 (620)
+||..||+||.+|-.+
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 4788899999887643
No 9
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=70.22 E-value=1.2 Score=30.78 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 007045 543 KRLSELEEKVDTLQAK 558 (620)
Q Consensus 543 ~r~~~lEekv~~L~~K 558 (620)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999888543
No 10
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=69.89 E-value=5.4 Score=27.33 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 007045 544 RLSELEEKVDTLQA 557 (620)
Q Consensus 544 r~~~lEekv~~L~~ 557 (620)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999988754
No 11
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=68.04 E-value=6.1 Score=27.23 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHH
Q 007045 543 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDAL 580 (620)
Q Consensus 543 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaL 580 (620)
+||..||+||.+|-.+ |+ -|.+-|.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 4889999999887543 22 344455555543
No 12
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=67.17 E-value=5.7 Score=27.42 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhcC
Q 007045 544 RLSELEEKVDTLQA 557 (620)
Q Consensus 544 r~~~lEekv~~L~~ 557 (620)
||..||+||.+|-.
T Consensus 2 RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 2 RMKQIEDKGEEILS 15 (34)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 88899999987743
No 13
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.07 E-value=8 Score=26.62 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 007045 543 KRLSELEEKVDTLQA 557 (620)
Q Consensus 543 ~r~~~lEekv~~L~~ 557 (620)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588999999988754
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=67.00 E-value=8.1 Score=26.46 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcC
Q 007045 544 RLSELEEKVDTLQA 557 (620)
Q Consensus 544 r~~~lEekv~~L~~ 557 (620)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987754
No 15
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=65.57 E-value=12 Score=32.26 Aligned_cols=68 Identities=18% Similarity=0.372 Sum_probs=49.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHH
Q 007045 533 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLA 603 (620)
Q Consensus 533 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~a 603 (620)
..-..+..+...+.+|+..|+.+..++ .||| |||.--+=.+|++|.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 445568899999999999999999874 6674 7899999999999887 55555543 333344555
Q ss_pred HHHH
Q 007045 604 YIDR 607 (620)
Q Consensus 604 yie~ 607 (620)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 16
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=63.65 E-value=20 Score=32.79 Aligned_cols=68 Identities=25% Similarity=0.390 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 605 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 605 (620)
-..+..+..++++|+.+|+....| +.||| |||.--+=+.|++|.+ +-..+|+ ++-+=.-++++|
T Consensus 33 ~~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~L 105 (142)
T 3a8y_C 33 HKAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYL 105 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 346788999999999999999777 56774 7999999999999887 4455554 444556677888
Q ss_pred HHHH
Q 007045 606 DRQE 609 (620)
Q Consensus 606 e~~k 609 (620)
|.++
T Consensus 106 D~k~ 109 (142)
T 3a8y_C 106 DLKS 109 (142)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8755
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=62.32 E-value=7.5 Score=26.71 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhc
Q 007045 544 RLSELEEKVDTLQ 556 (620)
Q Consensus 544 r~~~lEekv~~L~ 556 (620)
||..||+||.+|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 6788999988774
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.94 E-value=12 Score=26.11 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhc
Q 007045 543 KRLSELEEKVDTLQ 556 (620)
Q Consensus 543 ~r~~~lEekv~~L~ 556 (620)
+||..||+||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47778888887664
No 19
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=58.53 E-value=30 Score=29.02 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 605 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 605 (620)
-..+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.| +-..+|++ +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 346788889999999999999987 46774 7899999999999887 55555543 33334456666
Q ss_pred HH
Q 007045 606 DR 607 (620)
Q Consensus 606 e~ 607 (620)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 20
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.00 E-value=28 Score=27.58 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 007045 78 DVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (620)
Q Consensus 78 d~~d~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (620)
+-++..+.+.|.+|...-. ..|......||..++||++.|+..+-
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456777888999998873 12345789999999999999987764
No 21
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.62 E-value=47 Score=27.66 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007045 543 KRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 608 (620)
Q Consensus 543 ~r~~~lEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 608 (620)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+.+
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677778888888877655554 579999999999999999887665554544455666666666543
No 22
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.57 E-value=25 Score=24.51 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 007045 543 KRLSELEEKVDTLQAK 558 (620)
Q Consensus 543 ~r~~~lEekv~~L~~K 558 (620)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5788899999887543
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=52.27 E-value=65 Score=26.20 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007045 543 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 605 (620)
Q Consensus 543 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 605 (620)
+|...|=+.+..|.+=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776544332 489999999999999999887776555544444444444433
No 24
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.27 E-value=21 Score=28.47 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007045 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (620)
Q Consensus 81 d~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (620)
..+..+++++|++.. | ..|. ..+-.-|+++++|++.|++.|.++
T Consensus 15 ~~~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 344457788888775 2 2444 588899999999999999988765
No 25
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.69 E-value=25 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 007045 543 KRLSELEEKVDTLQAK 558 (620)
Q Consensus 543 ~r~~~lEekv~~L~~K 558 (620)
+||..||+||.+|-+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788999999887654
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.69 E-value=19 Score=28.02 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007045 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (620)
Q Consensus 86 ~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (620)
+++++|++.. | ..|. ..+-.-|+++++|++.|+..|.++
T Consensus 11 e~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5666666654 3 3455 488999999999999999998754
No 27
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.38 E-value=49 Score=25.66 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007045 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (620)
Q Consensus 81 d~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l 129 (620)
...+.+.|.+|...-. .+ ......||.+++||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 5566678888887652 12 3578999999999999998766
No 28
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.19 E-value=1.1e+02 Score=23.00 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007045 566 KEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 611 (620)
Q Consensus 566 KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 611 (620)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788899999999999999999999999999888654
No 29
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=40.46 E-value=46 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007045 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (620)
Q Consensus 84 E~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l 129 (620)
+.+.|.+|...-. .+ ......||.+++||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg--------~~-~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG--------AE-EDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC--------CC-HHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC--------cC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 4467788876541 12 3578999999999999998765
No 30
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.86 E-value=1.9e+02 Score=26.51 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007045 534 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 605 (620)
Q Consensus 534 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 605 (620)
+.+.|..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666 6777777777 3322344444 58999999999999999999999999999988
Q ss_pred HHHH
Q 007045 606 DRQE 609 (620)
Q Consensus 606 e~~k 609 (620)
+..-
T Consensus 123 ~~~l 126 (151)
T 1yke_B 123 DSLI 126 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 31
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=39.21 E-value=66 Score=28.19 Aligned_cols=68 Identities=18% Similarity=0.403 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 007045 535 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 605 (620)
Q Consensus 535 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 605 (620)
-..+..+...+.+|+..|+....++ .||| |||.--+=++|+||.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567888888999999999998875 6774 7899999999999887 4445544 344445567777
Q ss_pred HHHH
Q 007045 606 DRQE 609 (620)
Q Consensus 606 e~~k 609 (620)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7654
No 32
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=38.66 E-value=44 Score=28.73 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHH
Q 007045 536 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAEL----IATKKALHEALMRQEDLLAYID 606 (620)
Q Consensus 536 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdaLE~eL----~~TKKaL~~al~kQ~El~ayie 606 (620)
..+..+...+.+|+..|.....|+ .|| +|||.--+=++|+||.|= -..+|+ ++-+=.-++++||
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD 90 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELE 90 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467888899999999999998887 355 488888899999998763 333333 3333345666666
Q ss_pred HH
Q 007045 607 RQ 608 (620)
Q Consensus 607 ~~ 608 (620)
.+
T Consensus 91 ~k 92 (99)
T 1ugo_A 91 QN 92 (99)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.02 E-value=81 Score=25.66 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007045 538 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 600 (620)
Q Consensus 538 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 600 (620)
.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||..+.-.|.++..+-++
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666555332 3456667777789999999999999999888777554
No 34
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=36.85 E-value=2.4e+02 Score=26.22 Aligned_cols=69 Identities=9% Similarity=0.170 Sum_probs=51.3
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007045 530 PSLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 609 (620)
Q Consensus 530 ~~~~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 609 (620)
+.+.+.+++...+++|++|...+..+ |..+|+.+.||+.=.+.. .+..+...---|..|.+|.+..+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888999999999999999877 456788888888655444 33444555566778889998876
Q ss_pred Hh
Q 007045 610 EA 611 (620)
Q Consensus 610 ~~ 611 (620)
..
T Consensus 77 ~e 78 (171)
T 2p2u_A 77 TE 78 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 35
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=36.69 E-value=1.2e+02 Score=30.96 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 007045 546 SELEEKVDTLQAKPSEMPYE-----KEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQEE 610 (620)
Q Consensus 546 ~~lEekv~~L~~KP~~mP~E-----KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k-Q~El~ayie~~k~ 610 (620)
+++++-+..+.-..-.+|.+ =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888889953 45888999999999999999999999999888 7777776666653
No 36
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=34.67 E-value=88 Score=27.70 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCh--------------hHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 007045 539 SSVTKRLSELEEKVDTLQAKPSEMPY--------------EKEELLHAAVCRVDALEA----------------ELIATK 588 (620)
Q Consensus 539 ~~~~~r~~~lEekv~~L~~KP~~mP~--------------EKEe~L~aa~~RvdaLE~----------------eL~~TK 588 (620)
.+++.+|..||..+..|..+-.++-. +.++|.+.--.|+.-|++ ++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45566666666666666655443322 233444444455555553 577889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 007045 589 KALHEALMRQEDLLAYIDRQEEAK 612 (620)
Q Consensus 589 KaL~~al~kQ~El~ayie~~k~~k 612 (620)
|.|+.-+.+|++++.+.|+-|.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 37
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=32.35 E-value=99 Score=29.34 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=15.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 007045 561 EMPYEKEELLHAAVCRVDALEAELIA 586 (620)
Q Consensus 561 ~mP~EKEe~L~aa~~RvdaLE~eL~~ 586 (620)
++||=.++++..-+.+|+.+++++.+
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~ 45 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQS 45 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655543
No 38
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=31.97 E-value=69 Score=27.75 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 007045 575 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614 (620)
Q Consensus 575 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 614 (620)
-||-+|.-||--|||.|+.|-.+--|--|-|.++-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777766666665555444
No 39
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.48 E-value=35 Score=24.71 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 007045 541 VTKRLSELEEKVDTLQ 556 (620)
Q Consensus 541 ~~~r~~~lEekv~~L~ 556 (620)
+=.|.+|||++|.+|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 40
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.36 E-value=2.9e+02 Score=24.54 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007045 534 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 605 (620)
Q Consensus 534 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 605 (620)
+.+.|..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666656665 6777777777 3322244444 58999999999999999999999999999988
Q ss_pred HHH
Q 007045 606 DRQ 608 (620)
Q Consensus 606 e~~ 608 (620)
+..
T Consensus 123 ~~~ 125 (132)
T 1ykh_B 123 DSM 125 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 41
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=29.75 E-value=78 Score=28.04 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 007045 575 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 614 (620)
Q Consensus 575 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 614 (620)
-||-+|.-+|--|||.|+.|-.+--|--|-|.++-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777665555544
No 42
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.81 E-value=35 Score=31.93 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=42.5
Q ss_pred ccccchhhccccCCCCCCCccccccccCCCCHHHHHHHHHH-HHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007045 51 STKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAF-RQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (620)
Q Consensus 51 s~~~~~sl~k~~~~r~~~~~v~s~~ied~~d~eE~~al~ef-Rq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l 129 (620)
..+++.-|+.|| .+..+-.-.++++.++++.+...++ +..+..-...+ ......-+.+||..++|+.+.+...+
T Consensus 86 ~~~I~~eL~~KG----I~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~vl 160 (177)
T 3e3v_A 86 PKVIKLNLSKKG----IDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTII 160 (177)
T ss_dssp HHHHHHHHHTTT----CCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 445788898888 4444333334444334444433333 33332211111 01112367899999999999888877
Q ss_pred HHH
Q 007045 130 AEM 132 (620)
Q Consensus 130 ~~~ 132 (620)
.+.
T Consensus 161 ~~l 163 (177)
T 3e3v_A 161 QEL 163 (177)
T ss_dssp HHH
T ss_pred HHC
Confidence 653
No 43
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=27.63 E-value=45 Score=30.46 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=33.0
Q ss_pred EEEeCCCCCCCchHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHH
Q 007045 228 SILDVQGVNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 302 (620)
Q Consensus 228 vIiDl~Gls~sk~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L 302 (620)
+|||.+|..+...+-.+.+.+. +-..|+|||| +||.|-|+++...+
T Consensus 2 ~viDA~g~~LGRLAs~vAk~L~---------~Gd~VVViNa--------------------eki~iTG~k~~~K~ 47 (142)
T 1j3a_A 2 RIINADGLILGRLASRVAKMLL---------EGEEVVIVNA--------------------EKAVITGNREVIFS 47 (142)
T ss_dssp EEEECTTBBHHHHHHHHHHHHH---------TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHHHHHHHHHh---------cCCEEEEEeC--------------------eeeEecccHHhhee
Confidence 5889999876555544444333 5678999998 79999998765544
No 44
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=26.69 E-value=48 Score=30.41 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.0
Q ss_pred EEEeCCCCCCCchHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHH
Q 007045 228 SILDVQGVNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 302 (620)
Q Consensus 228 vIiDl~Gls~sk~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L 302 (620)
+|||.+|..+...+-.+.+.+. .-..|+|||| +||.|.|+++...+
T Consensus 10 ~viDA~g~~LGRLAs~vAk~L~---------~Gd~VVViNa--------------------eki~iTG~k~~~K~ 55 (145)
T 1vq8_J 10 VIVDARDCIMGRVASQVAEQAL---------DGETVAVVNA--------------------ERAVITGREEQIVE 55 (145)
T ss_dssp EEEECTTBBHHHHHHHHHHHHH---------TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHHHHHHHHHh---------cCCEEEEEeC--------------------EeeEecchhhhhee
Confidence 5889999876555544444333 6678999998 79999998765544
No 45
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.54 E-value=1.4e+02 Score=22.45 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007045 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (620)
Q Consensus 86 ~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (620)
..|++|++.= +.|.+..++-|++.++|+++|+..|-.+
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4456665552 3343456999999999999999887653
No 46
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=26.35 E-value=80 Score=26.93 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007045 548 LEEKVDTLQAKPSEM--PYEKEELLHAAVCRVDALEAELIATKKALHEA 594 (620)
Q Consensus 548 lEekv~~L~~KP~~m--P~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~a 594 (620)
|+.+..+....|. | |.--|..|+.+-.+|+.|++||-+=...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666 6 77779999999999999999999988888776
No 47
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=26.32 E-value=1.5e+02 Score=21.68 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 007045 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (620)
Q Consensus 84 E~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~ 128 (620)
..+.|.+|.+.-. .+|......||.+++||++.|...
T Consensus 5 ~de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3467888887552 355346789999999999999653
No 48
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=25.47 E-value=60 Score=31.33 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=34.3
Q ss_pred eEEEEeCCCCCCCchHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHH
Q 007045 226 STSILDVQGVNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 302 (620)
Q Consensus 226 ~tvIiDl~Gls~sk~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L 302 (620)
-++|||.+|..+...+-.+.+.+. .-..|.|||| +||.|-|+++...+
T Consensus 5 ~~vVIDA~g~vLGRLAS~VAk~L~---------~Gd~VVVVNa--------------------eki~iTG~k~~~K~ 52 (199)
T 4b6a_O 5 PVVVIDAKDHLLGRLASTIAKQLL---------NGQKIVVVRA--------------------EELNISGEFFRNKL 52 (199)
T ss_dssp SEEEEECTTBBHHHHHHHHHHHHH---------TTCEEEEECG--------------------GGCEEESCHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHHhc---------CCCEEEEEEc--------------------hheEEeCcHHHHHH
Confidence 368999999877665544444333 2467999998 79999998765554
No 49
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=25.09 E-value=48 Score=23.79 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007045 571 HAAVCRVDALEAELIATKKA 590 (620)
Q Consensus 571 ~aa~~RvdaLE~eL~~TKKa 590 (620)
.+|++|.+.+|+++-.+||.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999998873
No 50
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.40 E-value=1.1e+02 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 007045 109 HMMLRFLKARKFDIDKAKHMW 129 (620)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l 129 (620)
+...+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356899999999999998654
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.93 E-value=1.3e+02 Score=25.47 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007045 541 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 600 (620)
Q Consensus 541 ~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 600 (620)
.+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666654442 2366667766789999999999999888888766544
No 52
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=23.78 E-value=1.5e+02 Score=19.77 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007045 566 KEELLHAAVCRVDALEAELIATKKALHE 593 (620)
Q Consensus 566 KEe~L~aa~~RvdaLE~eL~~TKKaL~~ 593 (620)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566788888999999999999988865
No 53
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.57 E-value=1.4e+02 Score=22.94 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007045 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (620)
Q Consensus 85 ~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (620)
...|++|++.= ..|.+..++-|++.++|+++|.+.|-.
T Consensus 18 ~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34555555542 234346799999999999999987754
No 54
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.02 E-value=1.7e+02 Score=23.48 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007045 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (620)
Q Consensus 81 d~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (620)
.++-...|.+++..+ |+ ..+ .++.+.|..++.|+|.++..|-+
T Consensus 10 ~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 445567777777765 43 344 38999999999999999888754
No 55
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=22.57 E-value=45 Score=30.71 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=40.4
Q ss_pred ccccchhhccccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 007045 51 STKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (620)
Q Consensus 51 s~~~~~sl~k~~~~r~~~~~v~s~~ied~~d~eE~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (620)
..++++.|+.|| .+..+..-.++++.+++...+...++..... ..+.......-+.+||..++|+.+.+...+.
T Consensus 84 ~~~I~~eL~~KG----I~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 84 PLHIRAELGTHG----LDSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp HHHHHHHHHHTT----CCHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 356889999998 4444333334444222222333333333321 1121112224688999999999998776653
No 56
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.06 E-value=1.5e+02 Score=23.94 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007045 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (620)
Q Consensus 85 ~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (620)
.+.|++|++.= +.|.+..++-|++.++|+++|++.|-.
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34566666553 234356799999999999999887753
No 57
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.61 E-value=1.1e+02 Score=24.63 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007045 543 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKK 589 (620)
Q Consensus 543 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKK 589 (620)
+|...|=+.+..|.+--|.+| ..|-.+|..|+.=|+.|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655433332 47999999999999999988765443
No 58
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=21.56 E-value=1.1e+02 Score=23.64 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh----hHHHHHHHHHHHHHHHHHHHH
Q 007045 543 KRLSELEEKVDTLQAKPSEMPY----EKEELLHAAVCRVDALEAELI 585 (620)
Q Consensus 543 ~r~~~lEekv~~L~~KP~~mP~----EKEe~L~aa~~RvdaLE~eL~ 585 (620)
+|+.+|-+-+..|..--|.+|+ -|=+.|..|+.=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999888777774 588999999999999987664
No 59
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.34 E-value=1.9e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007045 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (620)
Q Consensus 85 ~~al~efRq~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (620)
..+|++|++.= +.|.+.-++-|++.++|+++|++.|..
T Consensus 20 ~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45666666543 244446699999999999999887754
No 60
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=21.02 E-value=68 Score=30.91 Aligned_cols=46 Identities=13% Similarity=0.356 Sum_probs=32.9
Q ss_pred EEEeCCCCCCCchHHHHHHHHHHhhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEeCCCchhHH
Q 007045 228 SILDVQGVNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 302 (620)
Q Consensus 228 vIiDl~Gls~sk~~~~~ik~l~kilq~~YPErL~ri~IINaP~~f~~lw~lVKpFLd~kTr~KI~~lg~~~~~~L 302 (620)
+|||.+|..+...+-.+.+.+. +-..|+|||+ ++|.|-|+++...+
T Consensus 6 ~VIDA~g~~LGRLAs~VAk~L~---------~GD~VVVINA--------------------ekI~iTG~K~~~K~ 51 (198)
T 4a17_I 6 VVIDAKGHLLGRLASYVAKELL---------SGQRIVVVRT--------------------EAINISGSLFRNRV 51 (198)
T ss_dssp EEEECTTBBHHHHHHHHHHHHH---------TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHHHHHHHHHh---------CCCEEEEEcC--------------------ccccccCchhhhee
Confidence 6889999876655544444333 4567999999 79999999875554
No 61
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=20.74 E-value=1.3e+02 Score=25.76 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChh----HHHHHHHHHHHHHHHHHHHHH
Q 007045 542 TKRLSELEEKVDTLQAKPSEMPYE----KEELLHAAVCRVDALEAELIA 586 (620)
Q Consensus 542 ~~r~~~lEekv~~L~~KP~~mP~E----KEe~L~aa~~RvdaLE~eL~~ 586 (620)
..||..|-+-++.|...-|.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999888888887 789999999999999887754
Done!