Query 007047
Match_columns 620
No_of_seqs 218 out of 2284
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 15:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 4.7E-73 1.6E-77 620.5 43.0 499 32-615 9-526 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 3.4E-72 1.2E-76 612.0 40.9 504 21-615 5-519 (536)
3 1v25_A Long-chain-fatty-acid-C 100.0 1E-71 3.6E-76 608.5 41.1 460 41-573 17-499 (541)
4 3etc_A AMP-binding protein; ad 100.0 1.9E-71 6.6E-76 610.0 42.4 457 37-564 51-525 (580)
5 3o83_A Peptide arylation enzym 100.0 9.3E-72 3.2E-76 609.3 39.4 449 41-564 29-489 (544)
6 3rix_A Luciferase, luciferin 4 100.0 2.2E-71 7.7E-76 607.4 39.4 479 33-576 11-507 (550)
7 3r44_A Fatty acyl COA syntheta 100.0 4.6E-71 1.6E-75 600.0 41.5 480 39-615 13-497 (517)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.6E-71 5.4E-76 606.8 36.4 455 41-574 24-495 (539)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.2E-70 4.2E-75 595.3 39.5 472 41-614 1-487 (504)
10 2d1s_A Luciferase, luciferin 4 100.0 5.4E-70 1.8E-74 595.6 41.6 488 41-614 24-526 (548)
11 3c5e_A Acyl-coenzyme A synthet 100.0 2.7E-69 9.2E-74 592.1 45.4 494 38-615 34-546 (570)
12 1pg4_A Acetyl-COA synthetase; 100.0 4.6E-70 1.6E-74 607.2 39.6 504 40-616 74-606 (652)
13 4gr5_A Non-ribosomal peptide s 100.0 3E-70 1E-74 600.8 37.5 465 39-615 72-555 (570)
14 1ry2_A Acetyl-coenzyme A synth 100.0 1.6E-69 5.4E-74 603.1 41.0 513 39-617 79-623 (663)
15 4fuq_A Malonyl COA synthetase; 100.0 2.9E-70 1E-74 591.6 34.1 475 46-615 4-484 (503)
16 3ivr_A Putative long-chain-fat 100.0 9.4E-70 3.2E-74 589.4 37.7 440 40-564 4-450 (509)
17 2v7b_A Benzoate-coenzyme A lig 100.0 1.2E-68 4.1E-73 583.5 39.2 491 37-615 19-516 (529)
18 1amu_A GRSA, gramicidin synthe 100.0 1.3E-68 4.4E-73 585.9 39.6 460 41-615 38-513 (563)
19 4dg8_A PA1221; ANL superfamily 100.0 1.7E-68 6E-73 589.7 40.4 438 40-575 25-479 (620)
20 3e7w_A D-alanine--poly(phospho 100.0 2E-68 6.9E-73 579.0 38.9 470 42-615 1-487 (511)
21 3fce_A D-alanine--poly(phospho 100.0 7.1E-69 2.4E-73 582.9 31.9 471 42-615 1-488 (512)
22 3rg2_A Enterobactin synthase c 100.0 6.6E-68 2.3E-72 587.3 38.3 458 40-574 25-498 (617)
23 3tsy_A Fusion protein 4-coumar 100.0 5E-68 1.7E-72 618.3 37.4 480 16-564 39-531 (979)
24 3nyq_A Malonyl-COA ligase; A/B 100.0 1.4E-68 4.7E-73 578.6 29.3 468 36-615 16-492 (505)
25 3l8c_A D-alanine--poly(phospho 100.0 7.2E-68 2.5E-72 576.5 33.7 475 41-615 3-496 (521)
26 3ipl_A 2-succinylbenzoate--COA 100.0 6.3E-68 2.2E-72 574.1 32.8 474 42-614 1-480 (501)
27 3ite_A SIDN siderophore synthe 100.0 2.7E-66 9.1E-71 569.2 34.9 494 37-613 15-524 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 7.6E-66 2.6E-70 569.5 36.5 447 39-563 8-509 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 8.9E-65 3E-69 559.6 41.8 450 31-562 10-507 (576)
30 2vsq_A Surfactin synthetase su 100.0 3.5E-64 1.2E-68 600.2 43.5 464 41-615 463-944 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 6.3E-59 2.2E-63 501.3 31.9 401 40-514 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.2E-45 4.1E-50 380.3 17.9 296 219-615 36-338 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.2E-43 1.4E-47 372.6 21.5 318 216-610 81-415 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 5.6E-42 1.9E-46 364.0 27.1 334 197-609 70-416 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 8.9E-42 3E-46 363.2 27.5 334 197-609 72-420 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 4.5E-29 1.5E-33 258.6 17.9 239 217-524 88-367 (369)
37 4eql_A 4-substituted benzoates 98.9 4.9E-08 1.7E-12 103.8 18.0 132 385-539 302-447 (581)
38 4b2g_A GH3-1 auxin conjugating 98.8 6.9E-08 2.4E-12 102.8 17.0 130 385-537 307-457 (609)
39 4epl_A Jasmonic acid-amido syn 98.6 1.4E-07 4.7E-12 100.1 11.1 130 401-550 320-473 (581)
40 3lax_A Phenylacetate-coenzyme 98.5 7.1E-08 2.4E-12 79.9 5.4 51 513-564 1-54 (109)
41 3gxs_A Phenylacetate-coenzyme 98.5 1.2E-07 4E-12 78.5 5.5 49 513-562 1-52 (109)
42 2y27_A Phenylacetate-coenzyme 92.3 1.5 5E-05 45.2 13.7 125 55-182 88-221 (437)
43 2y4o_A Phenylacetate-coenzyme 90.9 2.6 9.1E-05 43.3 13.8 125 55-182 90-223 (443)
44 3qov_A Phenylacetate-coenzyme 90.5 1.5 5.3E-05 45.0 11.5 123 57-182 86-217 (436)
45 3ipl_A 2-succinylbenzoate--COA 83.9 13 0.00044 38.7 14.0 121 55-181 161-284 (501)
46 3hgu_A EHPF; phenazine, antibi 83.8 5.5 0.00019 39.7 10.6 123 55-181 89-241 (369)
47 1mdb_A 2,3-dihydroxybenzoate-A 76.8 37 0.0013 35.6 14.8 122 55-182 180-309 (539)
48 4gr5_A Non-ribosomal peptide s 74.1 15 0.00052 39.0 10.9 122 55-182 212-337 (570)
49 2d1s_A Luciferase, luciferin 4 73.5 24 0.00081 37.2 12.1 121 57-181 192-319 (548)
50 4dg8_A PA1221; ANL superfamily 71.8 23 0.00078 38.1 11.7 122 55-182 162-287 (620)
51 3o83_A Peptide arylation enzym 71.7 41 0.0014 35.3 13.5 122 55-182 189-318 (544)
52 3fce_A D-alanine--poly(phospho 70.9 25 0.00086 36.5 11.5 123 55-182 142-272 (512)
53 3r44_A Fatty acyl COA syntheta 70.8 40 0.0014 35.1 13.1 120 56-182 169-295 (517)
54 3e7w_A D-alanine--poly(phospho 69.4 39 0.0013 35.0 12.7 122 55-181 141-270 (511)
55 3c5e_A Acyl-coenzyme A synthet 69.0 44 0.0015 35.3 13.1 123 55-182 204-333 (570)
56 4gs5_A Acyl-COA synthetase (AM 68.7 28 0.00096 34.3 10.7 129 42-181 25-158 (358)
57 1t5h_X 4-chlorobenzoyl COA lig 68.5 24 0.00082 36.7 10.7 122 55-182 151-283 (504)
58 3rix_A Luciferase, luciferin 4 67.2 32 0.0011 36.2 11.4 124 56-182 189-318 (550)
59 3rg2_A Enterobactin synthase c 66.9 58 0.002 34.8 13.6 121 56-182 183-313 (617)
60 3g7s_A Long-chain-fatty-acid-- 66.5 49 0.0017 34.7 12.8 107 218-328 32-140 (549)
61 1pg4_A Acetyl-COA synthetase; 63.5 40 0.0014 36.4 11.5 123 56-182 255-389 (652)
62 3ni2_A 4-coumarate:COA ligase; 63.3 39 0.0013 35.4 11.2 101 218-328 35-137 (536)
63 3ivr_A Putative long-chain-fat 62.4 35 0.0012 35.4 10.6 98 218-327 19-118 (509)
64 3kxw_A Saframycin MX1 syntheta 62.0 51 0.0018 34.8 12.0 123 55-182 165-300 (590)
65 1v25_A Long-chain-fatty-acid-C 60.2 64 0.0022 33.7 12.2 101 218-326 31-133 (541)
66 1ry2_A Acetyl-coenzyme A synth 58.9 59 0.002 35.1 11.8 123 56-182 261-395 (663)
67 3etc_A AMP-binding protein; ad 57.4 47 0.0016 35.2 10.6 123 55-182 223-352 (580)
68 3t5a_A Long-chain-fatty-acid-- 54.3 89 0.003 31.8 11.9 107 218-328 37-148 (480)
69 2cvi_A 75AA long hypothetical 53.6 27 0.00093 25.8 5.7 43 530-573 16-58 (83)
70 4fuq_A Malonyl COA synthetase; 52.4 52 0.0018 34.0 9.8 86 238-326 27-114 (503)
71 2v7b_A Benzoate-coenzyme A lig 52.0 55 0.0019 34.1 9.9 98 218-327 36-135 (529)
72 1amu_A GRSA, gramicidin synthe 51.3 83 0.0028 33.1 11.3 95 218-324 52-148 (563)
73 2zbc_A 83AA long hypothetical 48.7 31 0.0011 25.3 5.4 44 530-574 16-59 (83)
74 3nyq_A Malonyl-COA ligase; A/B 47.7 1.2E+02 0.004 31.3 11.6 103 55-164 153-259 (505)
75 2vsq_A Surfactin synthetase su 47.7 50 0.0017 39.1 9.5 123 55-183 605-732 (1304)
76 3tbh_A O-acetyl serine sulfhyd 44.0 85 0.0029 30.5 9.1 65 93-157 62-127 (334)
77 3ite_A SIDN siderophore synthe 43.6 1.4E+02 0.0046 31.3 11.5 124 56-182 174-305 (562)
78 2djw_A Probable transcriptiona 41.3 50 0.0017 24.9 5.6 44 529-573 15-58 (92)
79 3ezx_A MMCP 1, monomethylamine 38.6 1.3E+02 0.0043 27.1 8.7 53 266-318 93-149 (215)
80 3vc3_A Beta-cyanoalnine syntha 37.9 1.3E+02 0.0043 29.4 9.3 71 87-157 72-142 (344)
81 3tsy_A Fusion protein 4-coumar 37.8 1.1E+02 0.0038 34.8 10.2 99 218-326 74-174 (979)
82 4eez_A Alcohol dehydrogenase 1 37.7 1.3E+02 0.0044 29.1 9.5 76 77-155 137-215 (348)
83 3l8c_A D-alanine--poly(phospho 36.8 1.2E+02 0.0043 31.2 9.7 81 238-321 28-110 (521)
84 3tqh_A Quinone oxidoreductase; 28.3 2.3E+02 0.008 26.9 9.4 74 77-155 126-203 (321)
85 4h1h_A LMO1638 protein; MCCF-l 27.5 1.8E+02 0.006 28.1 8.2 60 97-156 8-86 (327)
86 1zsy_A Mitochondrial 2-enoyl t 27.1 1.5E+02 0.005 28.9 7.8 78 77-155 140-223 (357)
87 3gqw_A Fatty acid AMP ligase; 26.7 2.4E+02 0.0082 29.3 10.0 88 237-327 47-143 (576)
88 3ijw_A Aminoglycoside N3-acety 26.6 1E+02 0.0035 28.8 6.0 25 87-111 18-42 (268)
89 3sr3_A Microcin immunity prote 25.6 2E+02 0.0068 27.9 8.2 61 97-157 9-88 (336)
90 2cg4_A Regulatory protein ASNC 25.2 1.5E+02 0.005 24.6 6.4 45 529-574 82-126 (152)
91 3ju7_A Putative PLP-dependent 24.5 1.6E+02 0.0054 28.9 7.5 60 92-154 69-135 (377)
92 3goh_A Alcohol dehydrogenase, 24.5 1.7E+02 0.0058 27.8 7.6 73 76-153 115-190 (315)
93 3two_A Mannitol dehydrogenase; 23.4 2.1E+02 0.0072 27.6 8.2 73 77-153 150-225 (348)
94 3i4p_A Transcriptional regulat 23.3 1.3E+02 0.0045 25.4 5.8 43 529-572 79-121 (162)
95 3tla_A MCCF; serine protease, 23.3 2.2E+02 0.0076 28.0 8.1 61 97-157 39-118 (371)
96 4e5s_A MCCFLIKE protein (BA_56 22.8 2.2E+02 0.0074 27.5 7.8 61 97-157 8-87 (331)
97 2p5v_A Transcriptional regulat 22.2 1.9E+02 0.0066 24.2 6.7 45 529-574 85-129 (162)
98 1h2b_A Alcohol dehydrogenase; 22.1 2.7E+02 0.0093 26.9 8.7 77 77-156 155-239 (359)
99 4aec_A Cysteine synthase, mito 22.0 3.2E+02 0.011 27.5 9.1 63 94-156 166-229 (430)
100 3s2e_A Zinc-containing alcohol 21.3 2.8E+02 0.0095 26.5 8.5 76 77-156 140-218 (340)
101 2q3b_A Cysteine synthase A; py 21.0 3.9E+02 0.013 25.2 9.4 64 93-157 58-122 (313)
102 3ist_A Glutamate racemase; str 20.8 3.2E+02 0.011 25.4 8.3 63 46-115 19-81 (269)
103 3jv7_A ADH-A; dehydrogenase, n 20.7 2.7E+02 0.0093 26.7 8.3 78 77-157 143-225 (345)
104 2cf5_A Atccad5, CAD, cinnamyl 20.3 2.2E+02 0.0077 27.5 7.6 77 77-156 153-233 (357)
105 2dbb_A Putative HTH-type trans 20.1 1.9E+02 0.0064 23.9 6.1 41 530-571 83-124 (151)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.7e-73 Score=620.51 Aligned_cols=499 Identities=20% Similarity=0.242 Sum_probs=393.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCC--CCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC
Q 007047 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (620)
Q Consensus 32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~--~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~ 109 (620)
.++|..+....++.++|.++++++||++|+++. ++ ..+.++++||+||.++++++|++|++.|+++||+|+|+++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 456666677799999999999999999999987 42 1334578999999999999999999999999999999999
Q ss_pred CcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHH
Q 007047 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (620)
Q Consensus 110 n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 189 (620)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+...... .....++..+..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence 99999999999999999999999999999999999999999999998876655443322 234555555432
Q ss_pred HhhcCCceeeHHHHHhcCccCcccCCCCC-CCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcE
Q 007047 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (620)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (620)
..+++++........ ...... ++|+++|+|||||||.||||++||+++...+......+ ++..+|+
T Consensus 157 -------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~ 223 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDT 223 (549)
T ss_dssp -------SSCHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCE
T ss_pred -------CcCHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCE
Confidence 345666665543322 222333 48999999999999999999999999999998877766 7899999
Q ss_pred EEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007047 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (620)
Q Consensus 269 ~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (620)
+++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.......
T Consensus 224 ~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------ 291 (549)
T 3g7s_A 224 IVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------ 291 (549)
T ss_dssp EECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------
T ss_pred EEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------
Confidence 9999999999998877778999999999876 999999999999999999999999998764332100
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHh----cC---CeeEeecCCCCC
Q 007047 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTET 420 (620)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~YG~TE~ 420 (620)
..++ +++|.+++||+++++++.+++.+. ++ +++++.||+||+
T Consensus 292 -----------------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 340 (549)
T 3g7s_A 292 -----------------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA 340 (549)
T ss_dssp -----------------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGG
T ss_pred -----------------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecccc
Confidence 0011 389999999999999999999887 56 899999999999
Q ss_pred CCceeeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc---cCC--cc
Q 007047 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WF 495 (620)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~---~dg--w~ 495 (620)
+.+++..........+++|.|+++++++|+|.+++ .+++.|+.|||+|+|++++.|||++|+.|.+.| .+| ||
T Consensus 341 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~ 418 (549)
T 3g7s_A 341 CPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDG--RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418 (549)
T ss_dssp SSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSC--CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEE
T ss_pred chhhhcCCccccCcCCCccccCCCCEEEEEeCCCC--cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceE
Confidence 98887766555455689999999999999994443 455677899999999999999999999999998 678 99
Q ss_pred cccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHH
Q 007047 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY 572 (620)
Q Consensus 496 ~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~ 572 (620)
+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++..
T Consensus 419 ~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----- 492 (549)
T 3g7s_A 419 RTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR----- 492 (549)
T ss_dssp EEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT-----
T ss_pred ccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc-----
Confidence 99999999999999999999999997 7999999999999999999999999997764 47889998764310
Q ss_pred HCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
.. ....++++++.++++.++.|..+.+++-.|++
T Consensus 493 -~~--------~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 526 (549)
T 3g7s_A 493 -GK--------VDEEDIIEWVRERISGYKRVREVEFVEELPRT 526 (549)
T ss_dssp -TS--------CCHHHHHHHHHTTCC-----CCCCEEEECC--
T ss_pred -Cc--------CCHHHHHHHHHHhccCcccceEEEEeccCCCC
Confidence 00 01125666666667777777777666655543
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.4e-72 Score=611.97 Aligned_cols=504 Identities=25% Similarity=0.324 Sum_probs=405.2
Q ss_pred CCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCC
Q 007047 21 VGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100 (620)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~ 100 (620)
+..+|++......+| ...++.++|.++++++||++|+++. ++. +++||+||.++++++|++|++.|+++
T Consensus 5 ~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~ 73 (536)
T 3ni2_A 5 EEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQ 73 (536)
T ss_dssp CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred cceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666554333322 3478999999999999999999864 321 57999999999999999999999999
Q ss_pred CCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEec
Q 007047 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (620)
Q Consensus 101 gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~ 180 (620)
||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .. .++.++
T Consensus 74 gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~~ 150 (536)
T 3ni2_A 74 GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCVD 150 (536)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEESS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEec
Confidence 999999999999999999999999999999999999999999999999999999987766554332211 22 344443
Q ss_pred CCcHHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhccccc
Q 007047 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE 260 (620)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~ 260 (620)
... .....++++...... ........++|+++++|||||||.||||++||++++..+....... ...
T Consensus 151 ~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~ 217 (536)
T 3ni2_A 151 SAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NPN 217 (536)
T ss_dssp CCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SCS
T ss_pred CCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-ccc
Confidence 321 134566666654322 2233456789999999999999999999999999998876543321 011
Q ss_pred CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhc
Q 007047 261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (620)
Q Consensus 261 ~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 338 (620)
..+..+|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------- 290 (536)
T 3ni2_A 218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD------- 290 (536)
T ss_dssp SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC-------
T ss_pred ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc-------
Confidence 25788999999999999999865 5678999999999876 89999999999999999999999998764211
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCC
Q 007047 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL 417 (620)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~ 417 (620)
....++ +++|.+++||+++++++.+++++.+ ++++++.||+
T Consensus 291 ------------------------------~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~ 332 (536)
T 3ni2_A 291 ------------------------------LDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM 332 (536)
T ss_dssp ------------------------------GGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred ------------------------------cccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence 111122 3899999999999999999999988 8999999999
Q ss_pred CCCCCceeecc----CCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cC
Q 007047 418 TETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID 492 (620)
Q Consensus 418 TE~~~~~~~~~----~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~d 492 (620)
||++.+++.+. .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|+.++.|||++|+.|.+.| .+
T Consensus 333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~ 410 (536)
T 3ni2_A 333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKE 410 (536)
T ss_dssp GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCC
Confidence 99998766542 12233458899999999999999 4433 455677899999999999999999999999999 79
Q ss_pred CcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHH
Q 007047 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK 569 (620)
Q Consensus 493 gw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~ 569 (620)
|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 411 g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--- 486 (536)
T 3ni2_A 411 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS--- 486 (536)
T ss_dssp SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC---
T ss_pred CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC---
Confidence 99999999999999999999999999998 7999999999999999999999999986543 5889999875421
Q ss_pred HHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
. ....++++++.++++.++.|.++.+++-.|++
T Consensus 487 -----~--------~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t 519 (536)
T 3ni2_A 487 -----Q--------ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKA 519 (536)
T ss_dssp -----C--------CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBC
T ss_pred -----C--------CCHHHHHHHHHHhccCCccccEEEEEecCCCC
Confidence 0 01125666666667777777777776666654
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1e-71 Score=608.47 Aligned_cols=460 Identities=25% Similarity=0.321 Sum_probs=364.9
Q ss_pred cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
..++.++|.++++++||++|+++. +. +..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 21 2347899999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (620)
|+++|++++|+++.++.+++.+++++++++++|++.+....+.... ...+.++.++.++.... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999988765543322 22344556666554221 023456
Q ss_pred HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhh--hhhcccccCCCCCCcEEEEecChhHH
Q 007047 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI 278 (620)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~~~~~pl~h~ 278 (620)
++++..... .....++++++++|||||||.||||++||++++...... ...+ +++++|++++.+|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 665543221 134567899999999999999999999999998776542 2223 67889999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (620)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (620)
+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.......
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------- 290 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--------------------- 290 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC---------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC---------------------
Confidence 998667778999999999864 899999999999999999999999998764332110
Q ss_pred hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-----
Q 007047 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (620)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~----- 431 (620)
++ +++|.+++||+++++++.+++ +.+|+++++.||+||++.+++......
T Consensus 291 ----------------~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 291 ----------------RL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp ----------------CC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred ----------------cc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence 01 389999999999999999999 557999999999999998777654331
Q ss_pred -----ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEcc
Q 007047 432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (620)
Q Consensus 432 -----~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~ 505 (620)
....+++|.|+|+++++|+| +++...+.+.++.|||+|+|+.++.|||++|+.|.+.| .||||+|||+|++|+
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence 12347899999999999999 77766655445789999999999999999999999999 499999999999999
Q ss_pred CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC-----hHHHHHHHHH
Q 007047 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC-----EEDTKKWAYS 573 (620)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~-----~~~~~~~~~~ 573 (620)
||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++.+++.+
T Consensus 425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~ 499 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLK 499 (541)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------------------
T ss_pred CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHh
Confidence 9999999999999996 8999999999999999999999999987654 5888998864 2455566655
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.9e-71 Score=609.95 Aligned_cols=457 Identities=17% Similarity=0.177 Sum_probs=380.3
Q ss_pred CCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (620)
Q Consensus 37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~ 116 (620)
.+.+++.+.++|+++|+++||++|+++. ++ .+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++
T Consensus 51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~ 126 (580)
T 3etc_A 51 VPENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY 126 (580)
T ss_dssp CCSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred CcccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence 3456777789999999999999999986 43 3445899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhH--HHhcccccccccCc-cEEEEecCCcHHHHHHHhhc
Q 007047 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQT 193 (620)
Q Consensus 117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~ 193 (620)
++|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+..... ..+.+ ..++.++...
T Consensus 127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 195 (580)
T 3etc_A 127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV---------- 195 (580)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------
T ss_pred HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------
Confidence 9999999999999999999999999999999999999987653 33322221 12232 3445544321
Q ss_pred CCceeeHHHHHhcCccCcccC---CCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEE
Q 007047 194 GIKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (620)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 270 (620)
...+.++.+.+.........+ ....++|+++++|||||||.||||+++|.+++..+.....++ ++..+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 270 (580)
T 3etc_A 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHY 270 (580)
T ss_dssp CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEE
T ss_pred ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEE
Confidence 123566776665443322211 246789999999999999999999999999988776655444 788999999
Q ss_pred EecChhHHHHHHH-HHHHhhcCcEEEEec---CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047 271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (620)
Q Consensus 271 ~~~pl~h~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (620)
+..|++|..+... .+.++..|+++++.+ .++..+++.++++++|+++++|++++.+.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---------------- 334 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---------------- 334 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------
Confidence 9999999888764 567899999998874 28999999999999999999999999876410
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceee
Q 007047 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (620)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 426 (620)
....++ ++||.+++||+++++++.++|.+.+|+++++.||+||++..++.
T Consensus 335 ----------------------~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 335 ----------------------LSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ----------------------C---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred ----------------------cccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence 011112 38999999999999999999999889999999999999877666
Q ss_pred ccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec-----CCcccccCCChhhhhccccCCcccccceE
Q 007047 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (620)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g-----~~v~~gy~~~~~~t~~~~~dgw~~TGDl~ 501 (620)
.+.. ....+++|+|+|+++++|+| +++. +++.|+.|||+|+| +.++.||+++|+.|.+.|.+|||+|||+|
T Consensus 385 ~~~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg 460 (580)
T 3etc_A 385 FPWM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA 460 (580)
T ss_dssp CTTS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEE
T ss_pred CCCC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEE
Confidence 5433 33458999999999999999 6654 55667899999997 78999999999999999999999999999
Q ss_pred EEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE 564 (620)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~ 564 (620)
++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 461 ~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~ 525 (580)
T 3etc_A 461 WMDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTK 525 (580)
T ss_dssp EECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred EECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECC
Confidence 99999999999999999997 6999999999999999999999999987654 58889998754
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=9.3e-72 Score=609.27 Aligned_cols=449 Identities=15% Similarity=0.165 Sum_probs=334.3
Q ss_pred cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
..|+.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 196 (620)
|+++|++++|+++.++.+++.+++++++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876431 111111222234455555544311
Q ss_pred eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (620)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 276 (620)
...+.++...............++|+++++|||||||.||||++||+++...+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 223444444332222233456789999999999999999999999999999998877776 889999999999999
Q ss_pred HHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (620)
Q Consensus 277 h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (620)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 303 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK------------------- 303 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence 9999874 6678999999999876 89999999999999999999999999876432111
Q ss_pred HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcc
Q 007047 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (620)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~ 433 (620)
.++ +++|.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus 304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 112 389999999999999999999998999999999999998655444333334
Q ss_pred ccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEE
Q 007047 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (620)
Q Consensus 434 ~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~ 511 (620)
...++|.|+ ++++++|+| +++. +++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 447899996 899999999 6654 45667899999999999999999999999999 799999999999999999999
Q ss_pred eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE 564 (620)
Q Consensus 512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~ 564 (620)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~ 489 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN 489 (544)
T ss_dssp EEEEC---------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC
Confidence 9999999996 7999999999999999999999999987654 47888888754
No 6
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.2e-71 Score=607.38 Aligned_cols=479 Identities=25% Similarity=0.299 Sum_probs=335.7
Q ss_pred CCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 007047 33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP 112 (620)
Q Consensus 33 ~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~ 112 (620)
+.+..+....|+.++|.++++++||++|++... ++..+ +++||+||.++++++|++|++.|+++||+|+|+++|++
T Consensus 11 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 86 (550)
T 3rix_A 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL 86 (550)
T ss_dssp CCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Confidence 335566667899999999999999999986320 22111 68999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047 113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (620)
Q Consensus 113 e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 192 (620)
++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.... ...+.+..++.++....
T Consensus 87 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------- 157 (550)
T 3rix_A 87 QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD-------- 157 (550)
T ss_dssp TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC--------
T ss_pred cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc--------
Confidence 999999999999999999999999999999999999999999998776554432 23345666666654321
Q ss_pred cCCceeeHHHHHhcCccCc------ccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCC
Q 007047 193 TGIKPYSWDEFLHLGKVNE------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD 266 (620)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~ 266 (620)
.....++.++........ .+.....++|+++++|||||||.||||++||++++..+......+ ...++.++
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~ 234 (550)
T 3rix_A 158 -YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPD 234 (550)
T ss_dssp -BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTT
T ss_pred -ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCC
Confidence 112445666554332211 111223468899999999999999999999999998877654431 11257789
Q ss_pred cEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007047 267 DVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (620)
Q Consensus 267 d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (620)
|++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+..
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------- 299 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST--------------- 299 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC---------------
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc---------------
Confidence 999999999999998888888999999999876 8999999999999999999999999886421
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCe-eEeecCCCCCCCce
Q 007047 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPT 424 (620)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~ 424 (620)
..+..++ +++|.+++||+++++++.+++.+.++.. +++.||+||+++.+
T Consensus 300 ----------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~ 349 (550)
T 3rix_A 300 ----------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI 349 (550)
T ss_dssp ----------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEE
T ss_pred ----------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccce
Confidence 1111122 3899999999999999999999988864 99999999999887
Q ss_pred eeccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEE
Q 007047 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503 (620)
Q Consensus 425 ~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~ 503 (620)
+...... ...+++|.|+|+++++|+| ++++ .+++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++
T Consensus 350 ~~~~~~~-~~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~ 426 (550)
T 3rix_A 350 LITPEGD-DKPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYW 426 (550)
T ss_dssp EECCTTC-CCTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEE
T ss_pred ecCCCCC-CCCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEE
Confidence 7765544 3448999999999999999 4333 556677899999999999999999999999999 8999999999999
Q ss_pred ccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh------HHHHHHHHHC
Q 007047 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE------EDTKKWAYSN 574 (620)
Q Consensus 504 ~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~------~~~~~~~~~~ 574 (620)
|+||+|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++++ +++.++++++
T Consensus 427 ~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 505 (550)
T 3rix_A 427 DEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ 505 (550)
T ss_dssp CTTCCEEEC-----------------------------------------------------------------------
T ss_pred eCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 999999999999999997 7999999999999999999999999987754 47888888643 4566666655
Q ss_pred CC
Q 007047 575 GH 576 (620)
Q Consensus 575 ~~ 576 (620)
..
T Consensus 506 l~ 507 (550)
T 3rix_A 506 VT 507 (550)
T ss_dssp --
T ss_pred cc
Confidence 43
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=4.6e-71 Score=600.00 Aligned_cols=480 Identities=24% Similarity=0.317 Sum_probs=388.0
Q ss_pred CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (620)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 118 (620)
+...|+.++|.++++++||++|+++. +. .+++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 56789999999999999999999875 32 158999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (620)
Q Consensus 119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 198 (620)
|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987765443222111 11111111111 01
Q ss_pred eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (620)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~ 278 (620)
.+.+.+.... .........++|+++++|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|.
T Consensus 150 ~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 2333333221 12233456789999999999999999999999999999998877766 78999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007047 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (620)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (620)
+++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 279 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------ 279 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence 998876666559999999876 9999999999999999999999999886532211
Q ss_pred hccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-ccccC
Q 007047 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (620)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~ 436 (620)
..++ +++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus 280 -------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 280 -------------ELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp -------------HCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred -------------cCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 1111 489999999999999999999886 999999999999998776654433 34458
Q ss_pred ccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeeccc
Q 007047 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (620)
Q Consensus 437 ~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~ 516 (620)
++|.|+++++++++| +++.. ++.| .|||+|+|+.++.|||++|+.|.+.|.+|||+|||+|++++||+|+|+||+|
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~~--~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGVI--REHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSCE--ESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCCC--CCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 999999999999999 65543 3344 7999999999999999999999999999999999999999999999999999
Q ss_pred CeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHH
Q 007047 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI 593 (620)
Q Consensus 517 d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (620)
|+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+....++ ...++++++
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~-----------------~~~~l~~~l 475 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEV-----------------SEQQIVEYC 475 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTC-----------------CHHHHHHHH
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCC-----------------CHHHHHHHH
Confidence 99997 7999999999999999999999999987654 36667764332110 112566666
Q ss_pred HHHHHHHHHHCCCccCCccccc
Q 007047 594 LSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 594 ~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
.+.++.++.|..+.+++-.|++
T Consensus 476 ~~~L~~~~~P~~i~~v~~lP~t 497 (517)
T 3r44_A 476 GTRLARYKLPKKVIFAEAIPRN 497 (517)
T ss_dssp HHHSCGGGSCSEEEECSCCCBC
T ss_pred HHhCCCCCCCCEEEEECCCCCC
Confidence 6777777777777776665544
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.6e-71 Score=606.75 Aligned_cols=455 Identities=19% Similarity=0.192 Sum_probs=373.0
Q ss_pred cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCCc
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 196 (620)
|+++|++++|+++.++.+++.+++++++++++|+++.... ..........+.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111111223444454443211
Q ss_pred eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 007047 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (620)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 276 (620)
.+.++.... ..........++|+++++|||||||.||||++||+++++.+......+ +++.+|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011121111 111122345789999999999999999999999999999888776666 788999999999999
Q ss_pred HHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007047 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (620)
Q Consensus 277 h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (620)
|.+++.. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 6778999999999876 89999999999999999999999999876432110
Q ss_pred HHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCcc
Q 007047 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (620)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~ 433 (620)
.++ +++|.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus 295 ------------------~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 ------------------DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp ------------------CCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------CCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 011 389999999999999999999988899999999999965433322222223
Q ss_pred ccCccccCccC-eeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEE
Q 007047 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (620)
Q Consensus 434 ~~~~~G~~~~~-~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~ 511 (620)
..+++|+|+++ .+++|+| +++. +++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 5899998 6554 55667899999999999999999999999999 699999999999999999999
Q ss_pred eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC-----hHHHHHHHHHC
Q 007047 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC-----EEDTKKWAYSN 574 (620)
Q Consensus 512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~-----~~~~~~~~~~~ 574 (620)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++.++++++
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~ 495 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRER 495 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhC
Confidence 9999999996 8999999999999999999999999987654 4789999875 34555555554
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.2e-70 Score=595.34 Aligned_cols=472 Identities=21% Similarity=0.264 Sum_probs=377.3
Q ss_pred cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
|+|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 211 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEE--cchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 198 (620)
|+++|++++|+++.++.+++.+++++++++++|+ +......+.... ...+ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 665544331111 1111 12
Q ss_pred eHHHHHhcCc----cCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCC--CCCcEEEEe
Q 007047 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (620)
Q Consensus 199 ~~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 272 (620)
.++++..... ..........++|+++++|||||||.||||++||+++.+.+......+ ++ +.+|++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222222110 011111345789999999999999999999999999998887766555 56 788999999
Q ss_pred cChhHHHHHH-HHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007047 273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (620)
Q Consensus 273 ~pl~h~~g~~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (620)
+|++|.+++. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 9999999985 46778999999999876 8999999999999999999999999987532100
Q ss_pred HHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCC
Q 007047 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (620)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 430 (620)
....++ +++|.+++||+++++++.+.+++.++..+++.||+||++. +....
T Consensus 266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR-- 316 (504)
T ss_dssp ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence 000011 3899999999999999999999999999999999999933 22222
Q ss_pred CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEe-cCCcccccCCChhhhhccccCCcccccceEEEccCCcE
Q 007047 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (620)
Q Consensus 431 ~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~-g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l 509 (620)
....+++|.|.+++++++++..++...+++.|+.|||+|+ |+.++.||+++|+.|.+.|.||||+|||+|++|+||+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1233789999999999999933333356677899999999 99999999999999999999999999999999999999
Q ss_pred EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhcc
Q 007047 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (620)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (620)
+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++. . ...
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~--------~~~ 458 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------T--------LSA 458 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------C--------CCH
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------C--------cCH
Confidence 999999999997 7999999999999999999999999997764 5899999976431 0 011
Q ss_pred HHHHHHHHH-HHHHHHHHCCCccCCcccc
Q 007047 587 VQLQNYILS-ELKNAAERNKVIFANWDTG 614 (620)
Q Consensus 587 ~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ 614 (620)
.++++++.. +++.++.|+++.+++-.|.
T Consensus 459 ~~l~~~~~~~~L~~~~~P~~i~~v~~lP~ 487 (504)
T 1t5h_X 459 DALDTFCRSSELADFKRPKRYFILDQLPK 487 (504)
T ss_dssp HHHHHHHHTSSCCGGGSCSEEEECSCCCB
T ss_pred HHHHHHHhhccCcccccceEEEEhhhCCC
Confidence 245555555 5666666666666665554
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.4e-70 Score=595.56 Aligned_cols=488 Identities=25% Similarity=0.293 Sum_probs=387.6
Q ss_pred cccHHH-HHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (620)
Q Consensus 41 ~~ti~~-~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 119 (620)
..++.+ +|.++++++ |++|+++. ++. +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 468999 899999999 99999863 211 579999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (620)
Q Consensus 120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 199 (620)
||+++|++++|+++.++.+++.+++++++++++|++......+..... ..+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence 999999999999999999999999999999999999887655433221 1122344555543210 001335
Q ss_pred HHHHHhcCccCcccCCCC------CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 007047 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (620)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 273 (620)
|+++.............. .++|+++++|||||||.||||++||+++...+......+. ..+++++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 666655432110111111 2389999999999999999999999999988876654410 12678899999999
Q ss_pred ChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047 274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (620)
Q Consensus 274 pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (620)
|++|.+++.. .+.++ .|+++++.+. ++..+++.++++++|+++++|+++..+.+...
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 302 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-------------------- 302 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence 9999999876 44556 9999999875 89999999999999999999999998864110
Q ss_pred HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCC
Q 007047 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD 430 (620)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~ 430 (620)
.+..++ +++|.+++||+++++++.+++.+.+ +..+++.||+||++..++.....
T Consensus 303 -----------------~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 357 (548)
T 2d1s_A 303 -----------------LNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG 357 (548)
T ss_dssp -----------------GGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred -----------------cccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence 111112 3899999999999999999999988 68899999999999877664433
Q ss_pred CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcE
Q 007047 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (620)
Q Consensus 431 ~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l 509 (620)
....+++|.|+|+++++|+|.+++ .+++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|
T Consensus 358 -~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 434 (548)
T 2d1s_A 358 -DDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434 (548)
T ss_dssp -CCCTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred -cCCCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence 334589999999999999993333 455677899999999999999999999999999 7999999999999999999
Q ss_pred EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhcc
Q 007047 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (620)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (620)
+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++. . ...
T Consensus 435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~--------~~~ 497 (548)
T 2d1s_A 435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------N--------MTE 497 (548)
T ss_dssp EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------C--------CCH
T ss_pred EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------C--------CCH
Confidence 999999999997 8999999999999999999999999987654 4788999875421 0 011
Q ss_pred HHHHHHHHHHHHHHHHHC-CCccCCcccc
Q 007047 587 VQLQNYILSELKNAAERN-KVIFANWDTG 614 (620)
Q Consensus 587 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 614 (620)
.++++++.++++.++.|. ++.+++-.|.
T Consensus 498 ~~l~~~~~~~l~~~~~p~~~i~~v~~lP~ 526 (548)
T 2d1s_A 498 KEVMDYVASQVSNAKRLRGGVRFVDEVPK 526 (548)
T ss_dssp HHHHHHHHTTSCGGGSCTTCEEECSSCCB
T ss_pred HHHHHHHHHhccccccccccEEEccCCCC
Confidence 245555555555555555 5555555443
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.7e-69 Score=592.13 Aligned_cols=494 Identities=19% Similarity=0.208 Sum_probs=399.0
Q ss_pred CCCcccHHHHHHHHHHh-----CCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCc
Q 007047 38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC 111 (620)
Q Consensus 38 ~~~~~ti~~~l~~~a~~-----~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~ 111 (620)
+..++++.++|.+++++ +||++|+++. +. .+..+++||+||.++++++|++|.+. |+++||+|+|+++|+
T Consensus 34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~ 109 (570)
T 3c5e_A 34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109 (570)
T ss_dssp CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence 34567788999999999 9999999976 42 23347899999999999999999998 999999999999999
Q ss_pred HhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHh
Q 007047 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (620)
Q Consensus 112 ~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 191 (620)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.... ...+.++.++.++....
T Consensus 110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence 9999999999999999999999999999999999999999999987766543322 22344556666654211
Q ss_pred hcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHH-HhhhhhhhcccccCCCCCCcEEE
Q 007047 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYL 270 (620)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~~~~~~d~~~ 270 (620)
.....+++++..... ........++|+++|+|||||||.||||++||+.+.. ..... ..+ +++.+|+++
T Consensus 182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~-----~~~~~d~~~ 251 (570)
T 3c5e_A 182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWT-----GLQASDIMW 251 (570)
T ss_dssp ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhc-----CCCCCceEE
Confidence 123456666654322 1222345789999999999999999999999994332 33332 333 788999999
Q ss_pred EecChhHHHHHH-HHHHHhhcCcEEEEec---CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007047 271 SFLPLAHILDRV-IEEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (620)
Q Consensus 271 ~~~pl~h~~g~~-~~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (620)
+.+|++|.+++. ..+.++..|+++++.. .++..+++.++++++|+++++|+++..+.+..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 315 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------- 315 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence 999999999987 4677899999999986 28999999999999999999999999886420
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceee
Q 007047 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (620)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 426 (620)
....++ +++|.+++||+++++++.+.|.+.+|+++++.||+||++..++.
T Consensus 316 ----------------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 316 ----------------------LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp ----------------------TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred ----------------------cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 000111 38999999999999999999998889999999999999876655
Q ss_pred ccCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEe-----cCCcccccCCChhhhhccccCCcccccceE
Q 007047 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (620)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~-----g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~ 501 (620)
.... ....+++|.|+++++++|+| +++. +++.|+.|||+|+ |++++.|||++|+.|.+.|.+|||+|||+|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4332 33458999999999999999 6654 4566789999999 999999999999999999999999999999
Q ss_pred EEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCC
Q 007047 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG 578 (620)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~ 578 (620)
++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++... .
T Consensus 442 ~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~---------~ 511 (570)
T 3c5e_A 442 IKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS---------H 511 (570)
T ss_dssp EECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT---------S
T ss_pred EEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC---------c
Confidence 99999999999999999997 7999999999999999999999999987653 578999998654210 0
Q ss_pred CHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 579 SFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
.-.. ...++++++.+.++.++.|.++.+++-.|++
T Consensus 512 ~~~~--~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 546 (570)
T 3c5e_A 512 DPEQ--LTKELQQHVKSVTAPYKYPRKIEFVLNLPKT 546 (570)
T ss_dssp CHHH--HHHHHHHHHHHHSCGGGSCSEEEEESCCCBC
T ss_pred chHH--HHHHHHHHHHhhCccccCCcEEEEeccCCCC
Confidence 0000 0126677777777777888887777766654
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.6e-70 Score=607.23 Aligned_cols=504 Identities=16% Similarity=0.202 Sum_probs=400.0
Q ss_pred CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (620)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 119 (620)
..+++.++|+++++++||++|+++. ++..+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3567899999999999999999986 4334455889999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH---------Hhccccccc-ccCccEEEEecCCcHHHHHH
Q 007047 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (620)
Q Consensus 120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~vi~~~~~~~~~~~~ 189 (620)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+....... ...+..+++++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999876421 111111110 01345666665321100
Q ss_pred HhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh-hhhhcccccCCCCCCcE
Q 007047 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV 268 (620)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~ 268 (620)
.........|++++..... ........++|+++|+|||||||.||||++||.+++..+.. ....+ ++.++|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 0000123567777764322 12233456899999999999999999999999998876643 33344 7889999
Q ss_pred EEEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007047 269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (620)
Q Consensus 269 ~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (620)
+++..|++|..++. .++.+|+.|+++++.+. ++..+++.++++++|+++++|++++.+.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------- 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence 99999999999984 57788999999999863 789999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCCC
Q 007047 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (620)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~TE 419 (620)
.....++ ++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 371 -------------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 371 -------------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp -------------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred -------------------------ccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 0011112 48999999999999999999998887 89999999999
Q ss_pred CCCceeeccCC-CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEec--CCcccccCCChhhhhccc---cCC
Q 007047 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (620)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~v~~gy~~~~~~t~~~~---~dg 493 (620)
+++.++...+. .....+++|+|++|++++|+| +++. +++.|+.|||+|+| |+++.|||++++.+.+.| .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99876655432 234558999999999999999 6655 44556899999999 799999999999998876 389
Q ss_pred cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHH
Q 007047 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW 570 (620)
Q Consensus 494 w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~ 570 (620)
||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++..
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~--- 570 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--- 570 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC---
Confidence 9999999999999999999999999998 7999999999999999999999999986643 58999999864310
Q ss_pred HHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCcccccc
Q 007047 571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCF 616 (620)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 616 (620)
. . .+ ...++++++.++++.++.|+.+.+++-.|++.
T Consensus 571 -----~-~--~~--~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~ 606 (652)
T 1pg4_A 571 -----P-S--PE--LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR 606 (652)
T ss_dssp -----C-C--HH--HHHHHHHHHHHHTCGGGCCSEEEECSCCCBCT
T ss_pred -----C-C--HH--HHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCC
Confidence 0 0 00 01256677777777777777777777666553
No 13
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3e-70 Score=600.79 Aligned_cols=465 Identities=20% Similarity=0.204 Sum_probs=316.3
Q ss_pred CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (620)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 118 (620)
+...++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999864 3 57999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCcee
Q 007047 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (620)
Q Consensus 119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 198 (620)
|||+++|++++|+++.++.+++.+++++++++++|++......+ .....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~--------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA--------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc---------------
Confidence 99999999999999999999999999999999999987654322 1122222111100
Q ss_pred eHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (620)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~ 278 (620)
. ............++|+++++|||||||.||||++||+++.+.+... ..+ +++++|++++.+|++|.
T Consensus 200 ------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~ 266 (570)
T 4gr5_A 200 ------S-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWD 266 (570)
T ss_dssp -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSS
T ss_pred ------c-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHH
Confidence 0 0011122334678999999999999999999999999998776542 222 67889999999999987
Q ss_pred HHHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007047 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (620)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (620)
.+....+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+....
T Consensus 267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------- 323 (570)
T 4gr5_A 267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------- 323 (570)
T ss_dssp THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence 766667788999999999863 899999999999999999999999988652110
Q ss_pred HhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC---
Q 007047 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--- 431 (620)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--- 431 (620)
.+ +++|.+++||+++++++.+.+.+.+ ++++++.||+||++++++......
T Consensus 324 -----------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~ 378 (570)
T 4gr5_A 324 -----------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL 378 (570)
T ss_dssp -----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred -----------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence 01 3899999999999999988888777 799999999999988776654332
Q ss_pred ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cC--------CcccccceEE
Q 007047 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ 502 (620)
Q Consensus 432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~d--------gw~~TGDl~~ 502 (620)
.....++|+|+++++++|+| +++. +++.|+.|||+|+|++++.|||++|+.|.+.| .+ |||+|||+|+
T Consensus 379 ~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 379 SGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR 455 (570)
T ss_dssp TSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred CCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence 22235799999999999999 6654 55567899999999999999999999999998 33 6999999999
Q ss_pred EccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCC
Q 007047 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 579 (620)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~ 579 (620)
+|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+....
T Consensus 456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~----------- 523 (570)
T 4gr5_A 456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP----------- 523 (570)
T ss_dssp ECTTSCEEEEEC--------------------------------------------------------------------
T ss_pred ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-----------
Confidence 9999999999999999997 8999999999999999999999999997654 578888887532100
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 580 FLELCSLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 580 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
....++++++.++++.++.|.++.+++-.|++
T Consensus 524 ----~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t 555 (570)
T 4gr5_A 524 ----PDAAELRRHVAEALPAYMVPVECVPVDELPRT 555 (570)
T ss_dssp ------------------------------------
T ss_pred ----cCHHHHHHHHHhhCccccCCcEEEEcccCCCC
Confidence 01125556666666666666666666555543
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-69 Score=603.14 Aligned_cols=513 Identities=17% Similarity=0.194 Sum_probs=404.4
Q ss_pred CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCcHhHHHH
Q 007047 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEA 117 (620)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~ 117 (620)
...+++.++|+++++++||++|+++. ++..+..+++||+||.++++++|+.|+ +.|+++||+|+|+++|+++++++
T Consensus 79 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a 155 (663)
T 1ry2_A 79 GQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT 155 (663)
T ss_dssp CEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred CCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Confidence 34578999999999999999999986 433445588999999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH---------HhcccccccccCccEEEEecCCcHHHHH
Q 007047 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKE 188 (620)
Q Consensus 118 ~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 188 (620)
+|||+++|++++|+++.++.+++.+++++++++++|+++.... .+.... ...+.++.+++++......
T Consensus 156 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~-- 232 (663)
T 1ry2_A 156 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPS-- 232 (663)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSS--
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCc--
Confidence 9999999999999999999999999999999999999876421 111111 1223456677665321000
Q ss_pred HHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhh-hhhhcccccCCCCCCc
Q 007047 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDD 267 (620)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d 267 (620)
.........+|+++...... ........++|+++|+|||||||.||||+++|.+++..+.. ....+ ++.++|
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d 305 (663)
T 1ry2_A 233 -VAFHAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQED 305 (663)
T ss_dssp -CCCCSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSC
T ss_pred -cccCCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCc
Confidence 00001123567777654321 12334457899999999999999999999999998876643 33334 788999
Q ss_pred EEEEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHH
Q 007047 268 VYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341 (620)
Q Consensus 268 ~~~~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 341 (620)
++++..|++|..+.. .++.+++.|+++++++. ++..+++.++++++|+++++|++++.+.+....
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--------- 376 (663)
T 1ry2_A 306 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS--------- 376 (663)
T ss_dssp EEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT---------
T ss_pred EEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc---------
Confidence 999999999999984 56788999999999863 689999999999999999999999887531100
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC---CeeEeecCCC
Q 007047 342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT 418 (620)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~YG~T 418 (620)
..+..++ ++||.+++||+++++++.+++.+.+| +++++.||+|
T Consensus 377 --------------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 422 (663)
T 1ry2_A 377 --------------------------YIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 422 (663)
T ss_dssp --------------------------SSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred --------------------------ccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence 0011112 38999999999999999999999887 8999999999
Q ss_pred CCCCceeeccC--CCccccCccccCccCeeEEEeecC-CCCCCCCCC-CCCceEEEec--CCcccccCCChhhhhccc--
Q 007047 419 ETCGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI-- 490 (620)
Q Consensus 419 E~~~~~~~~~~--~~~~~~~~~G~~~~~~~i~i~~~~-~~~~~~~~~-g~~Gei~v~g--~~v~~gy~~~~~~t~~~~-- 490 (620)
|+++.++.... .....++++|.|++|++++|+| + ++.. ++. |+.|||+|+| |+++.|||++++.+.+.|
T Consensus 423 E~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~--v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~ 499 (663)
T 1ry2_A 423 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEE--LNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN 499 (663)
T ss_dssp TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTC--EECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS
T ss_pred cccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCc--CCCCCcceEEEEecCCCchhcccccChHHHHHhhhc
Confidence 99987666543 2234558999999999999999 5 5443 334 6799999999 589999999999998887
Q ss_pred -cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHH
Q 007047 491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED 566 (620)
Q Consensus 491 -~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~ 566 (620)
.+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++.
T Consensus 500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~ 578 (663)
T 1ry2_A 500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 578 (663)
T ss_dssp SSTTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence 3899999999999999999999999999997 7999999999999999999999999997754 5899999987643
Q ss_pred HHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCccccccc
Q 007047 567 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFS 617 (620)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 617 (620)
.......... .. ...+++++++++++.++.|+.+.+++-.|++.+
T Consensus 579 ~~~~~~~~~~-~~-----l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~s 623 (663)
T 1ry2_A 579 SWSTATDDEL-QD-----IKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRS 623 (663)
T ss_dssp ---------C-CS-----HHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTT
T ss_pred ccccccchhH-HH-----HHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCc
Confidence 1000000000 00 023788888888999999999999888887643
No 15
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.9e-70 Score=591.64 Aligned_cols=475 Identities=23% Similarity=0.292 Sum_probs=379.2
Q ss_pred HHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCC
Q 007047 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (620)
Q Consensus 46 ~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 125 (620)
++|.+.++++|+++|+.+... ++ +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 478899999999999986411 22 579999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHHHHHh
Q 007047 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (620)
Q Consensus 126 ~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (620)
++++|+++.++.+++.+++++++++++|++......+....... . ..++.+..... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV--G-ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH--T-CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc--C-ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987654332221111 1 12333332211 11111111
Q ss_pred cCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-H
Q 007047 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (620)
Q Consensus 206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~ 284 (620)
.. ..........++|+++++|||||||.||||++||+++.+.+......+ +++++|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233456789999999999999999999999999999988877776 8899999999999999988764 5
Q ss_pred HHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCC
Q 007047 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (620)
Q Consensus 285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (620)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 678889999998876 8999999998 89999999999998864211
Q ss_pred CchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCcc
Q 007047 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (620)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (620)
....++ +++|.+++||+++++++.+.|.+.+|.++++.||+||++..++... ......+++|+|++
T Consensus 262 -----~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----ccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 001111 3899999999999999999999989999999999999987654333 33344588999999
Q ss_pred CeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEEEeecccCeEEcC
Q 007047 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (620)
Q Consensus 444 ~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~ 522 (620)
+++++|+|.+++ .+++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 328 ~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTDPETG--KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEECTTTC--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEECCCC--CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 999999993333 456677899999999999999999999999999 6999999999999999999999999999997
Q ss_pred CceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHH
Q 007047 523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599 (620)
Q Consensus 523 ~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 599 (620)
+|++|+|.|||++|.+||+|.+|+|++.++. +.++|+|+++++.- ....++++++.+.++.
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----------------~~~~~l~~~l~~~L~~ 468 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----------------IDEAQVLHGLDGQLAK 468 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------------CCHHHHHHHHBTTBCG
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC----------------CCHHHHHHHHHhhccc
Confidence 7999999999999999999999999986543 47889998754210 0012455556666666
Q ss_pred HHHHCCCccCCccccc
Q 007047 600 AAERNKVIFANWDTGC 615 (620)
Q Consensus 600 ~~~~~~~~~~~~~~~~ 615 (620)
++.|.++.+++-.|++
T Consensus 469 ~~~P~~i~~v~~lP~t 484 (503)
T 4fuq_A 469 FKMPKKVIFVDDLPRN 484 (503)
T ss_dssp GGCCSEEEEESCCCBC
T ss_pred CCCCCEEEEECCCCCC
Confidence 6666666666655543
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9.4e-70 Score=589.37 Aligned_cols=440 Identities=23% Similarity=0.297 Sum_probs=325.9
Q ss_pred CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (620)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 119 (620)
...|+.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (620)
Q Consensus 120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 199 (620)
||+++|++++|+++.++.+++.+++++++++++|++.+....+.... ........++.+++.. ..
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GP 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SS
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cC
Confidence 99999999999999999999999999999999999988766543333 2334556666665421 11
Q ss_pred HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (620)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~ 279 (620)
+.++...............++|+++++|||||||.||||++||+++++.+......+ +++++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222334456789999999999999999999999999999998877766 889999999999999999
Q ss_pred HHHHHHHH-hhcCcEEEEecCChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007047 280 DRVIEEYF-FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (620)
Q Consensus 280 g~~~~~~~-l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (620)
++...+.+ +..|+++++...++..+++.++++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 98876665 45555555554499999999999999999999999999875320
Q ss_pred ccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCCccccCc
Q 007047 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (620)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~ 437 (620)
..++ +++|.++++|++ ++.+.+.+.+ ++++++.||+||++++++....... ..+
T Consensus 268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0111 389999999987 7788888888 8999999999999987776554332 256
Q ss_pred cccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecc--
Q 007047 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK-- 515 (620)
Q Consensus 438 ~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~-- 515 (620)
+|.|+++++++|+| +++ .+++.|+.|||+|+|++++.|||++|+.|.+.|.+|||+|||+|++++||+++|+||+
T Consensus 323 ~G~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 665 4556678999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE 564 (620)
Q Consensus 516 ~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~ 564 (620)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.+
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 450 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450 (509)
T ss_dssp ----------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCC
Confidence 999996 7999999999999999999999999987754 47888888754
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.2e-68 Score=583.52 Aligned_cols=491 Identities=21% Similarity=0.224 Sum_probs=382.8
Q ss_pred CCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH
Q 007047 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (620)
Q Consensus 37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~ 116 (620)
+|..++++.++|.++++ +||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 88 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV 88 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence 34566789999999999 9999999864 2 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCc-cEEEEecCCcHHHHHHHhhcCC
Q 007047 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (620)
Q Consensus 117 ~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~ 195 (620)
++|||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++..+.... ...
T Consensus 89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~ 159 (529)
T 2v7b_A 89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPR 159 (529)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------ccc
Confidence 999999999999999999999999999999999999999876654433211 11122 34444443211 001
Q ss_pred ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHH-HHHhhhhhhhcccccCCCCCCcEEEEecC
Q 007047 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (620)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 274 (620)
....++++...... ........++|+++++|||||||.||||++||+++ ..........+ ++.++|++++.+|
T Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p 233 (529)
T 2v7b_A 160 LAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK 233 (529)
T ss_dssp CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred cccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence 12346666553221 12233467899999999999999999999999999 55555444434 6789999999999
Q ss_pred hhHHHHHHH-HHHHhhcCcEEEEec-C-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007047 275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (620)
Q Consensus 275 l~h~~g~~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (620)
++|.+++.. .+.++..|+++++.. . ++..+++.++++++|+++++|+++..+++... .
T Consensus 234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~-------------- 294 (529)
T 2v7b_A 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L-------------- 294 (529)
T ss_dssp TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C--------------
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c--------------
Confidence 999999875 567899999999873 3 89999999999999999999999988753110 0
Q ss_pred HHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC
Q 007047 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (620)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~ 431 (620)
.... ..++|.+++||+++++++.+.+.+.+|+++++.||+||++.+++......
T Consensus 295 --------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~ 348 (529)
T 2v7b_A 295 --------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA 348 (529)
T ss_dssp --------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred --------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence 0000 02789999999999999999999988999999999999977665554433
Q ss_pred ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEE
Q 007047 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (620)
Q Consensus 432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~ 511 (620)
...+++|.|+++++++|+| +++. +++.|+.|||+|+|++++.|||++++.|.+.|.+|||+|||+|++++||+|+|
T Consensus 349 -~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~ 424 (529)
T 2v7b_A 349 -VEYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY 424 (529)
T ss_dssp -CCTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred -CccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence 3448999999999999999 6654 45567899999999999999999999999999999999999999999999999
Q ss_pred eecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC--CceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHH
Q 007047 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (620)
Q Consensus 512 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (620)
+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+ .+.++|+|++.++.. . . ... ..++
T Consensus 425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~---------~-~-~~~--~~~l 490 (529)
T 2v7b_A 425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA---------P-S-EIL--AEEL 490 (529)
T ss_dssp EEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC---------C-C-HHH--HHHH
T ss_pred eCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC---------c-c-hhH--HHHH
Confidence 9999999997 799999999999999999999999998722 247889999864310 0 0 000 1256
Q ss_pred HHHHHHHHHHHHHHCCCccCCccccc
Q 007047 590 QNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 590 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
++++.+.++.++.|.++.+++-.|++
T Consensus 491 ~~~l~~~L~~~~~P~~i~~v~~lP~t 516 (529)
T 2v7b_A 491 KAFVKDRLAPHKYPRDIVFVDDLPKT 516 (529)
T ss_dssp HHHHHTTSCTTTSCSEEEEESCCCBC
T ss_pred HHHHHhhcchhhCCeEEEEeccCCCC
Confidence 77777777777778888777766654
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-68 Score=585.88 Aligned_cols=460 Identities=20% Similarity=0.230 Sum_probs=374.3
Q ss_pred cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (620)
|+++|++++|+++.++.+++.+++++++++++|++......+.... ....+..+....
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------- 166 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------- 166 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence 9999999999999999999999999999999999987655432211 111222222110
Q ss_pred HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (620)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 280 (620)
+. .. .......+..++|+++++|||||||.||||++||+++.+.+......+ +++++|++++.+|++|..+
T Consensus 167 --~~-~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 237 (563)
T 1amu_A 167 --IK-IR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS 237 (563)
T ss_dssp --TT-TS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred --hc-cc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence 00 00 111112345689999999999999999999999999998887766655 7889999999999999998
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (620)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (620)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+...
T Consensus 238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 290 (563)
T 1amu_A 238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------------- 290 (563)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence 8777888999999999763 789999999999999999999998765320
Q ss_pred hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC--ccc
Q 007047 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM 434 (620)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~ 434 (620)
. .+++|.+++||+++++++.+.|.+ .+.+++.||+||++.+++...... ...
T Consensus 291 ----------------~--------~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 344 (563)
T 1amu_A 291 ----------------R--------ILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH 344 (563)
T ss_dssp ----------------T--------CCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred ----------------c--------cccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence 0 138999999999999999999877 478999999999998766554322 223
Q ss_pred cCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc-------CCcccccceEEEccCC
Q 007047 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507 (620)
Q Consensus 435 ~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~-------dgw~~TGDl~~~~~dG 507 (620)
..++|+|+++++++|+| +++. +++.|+.|||+|+|++++.|||++|+.|.+.|. +|||+|||+|++|+||
T Consensus 345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG 421 (563)
T 1amu_A 345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG 421 (563)
T ss_dssp SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence 46899999999999999 6654 455678999999999999999999999999984 3599999999999999
Q ss_pred cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (620)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~ 584 (620)
+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++.+.
T Consensus 422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------ 482 (563)
T 1amu_A 422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------ 482 (563)
T ss_dssp CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------
T ss_pred eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------
Confidence 99999999999997 8999999999999999999999999987653 4789999875210
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 585 SLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 585 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
...++++++.+.++.++.|.++.+++-.|++
T Consensus 483 ~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t 513 (563)
T 1amu_A 483 PLEQLRQFSSEELPTYMIPSYFIQLDKMPLT 513 (563)
T ss_dssp CHHHHHHHHHHHSCGGGSCSEEEECSSCCBC
T ss_pred CHHHHHHHHHhhCchhhCCcEEEEecccCCC
Confidence 0125566666666667667766666665543
No 19
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.7e-68 Score=589.70 Aligned_cols=438 Identities=18% Similarity=0.146 Sum_probs=361.2
Q ss_pred CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (620)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 119 (620)
...|+.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4579999999999999999999875 3 579999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceee
Q 007047 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (620)
Q Consensus 120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 199 (620)
||+++|++++|++|.++.+++.++++++++++++++....... .....+ .
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~--------------------- 145 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-P--------------------- 145 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-E---------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-e---------------------
Confidence 9999999999999999999999999999999999765432211 011110 0
Q ss_pred HHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 007047 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (620)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~ 279 (620)
..... ............++|+|+++|||||||.||||+++|+++.+.+.. ...+ .+.++|++++.+|++|..
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 00000 001111223346899999999999999999999999999887765 3333 788999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEecC---ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (620)
Q Consensus 280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (620)
++...+.++..|+++++.+. ++..+.+.++++++|+++++|+++..+.+...
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 272 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------- 272 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence 98888889999999999742 89999999999999999999999998864200
Q ss_pred hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC---c
Q 007047 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (620)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~ 432 (620)
..+ +++|.+++||++++++..+.+.+.+ ++++++.||+||++.+++...... .
T Consensus 273 ---------------~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 329 (620)
T 4dg8_A 273 ---------------DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329 (620)
T ss_dssp ---------------GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred ---------------hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence 011 3899999999999988887776655 899999999999998776543322 2
Q ss_pred cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccC--------CcccccceEEEc
Q 007047 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL 504 (620)
Q Consensus 433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~d--------gw~~TGDl~~~~ 504 (620)
....++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.|||++|+.|.+.|.+ +||+|||+|+++
T Consensus 330 ~~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 330 EDDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 3346899999999999999 6554 33556789999999999999999999999999943 799999999999
Q ss_pred cCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC--ceEEEEEEcChHHHHHHHHHCC
Q 007047 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNG 575 (620)
Q Consensus 505 ~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~vv~~~~~~~~~~~~~~ 575 (620)
+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++...+.+.+++.++.
T Consensus 408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~L 479 (620)
T 4dg8_A 408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQL 479 (620)
T ss_dssp TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHHS
T ss_pred CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHhC
Confidence 99999999999999998 7999999999999999999999999986544 3666666665444444444443
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2e-68 Score=578.97 Aligned_cols=470 Identities=17% Similarity=0.205 Sum_probs=386.3
Q ss_pred ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
+++.++|.++|+++||++|+++. + +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 2 6899999999999999999875 889999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (620)
|+++|++++|+++.++.+++.+++++++++++|++......... ......++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~----------------------------~~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG----------------------------QQIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC----------------------------CSSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc----------------------------cccceecH
Confidence 99999999999999999999999999999999997543211100 01123445
Q ss_pred HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (620)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 280 (620)
+++...............++|+++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554433322333446789999999999999999999999999999988877666 7889999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (620)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (620)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++...
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8878889999999999864 78999999999999999999999988763210
Q ss_pred hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC----
Q 007047 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (620)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---- 431 (620)
.....+ +++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 254 ------------~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 000111 3899999999999999999999988 899999999999998776544322
Q ss_pred ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc--cCC--cccccceEEEccCC
Q 007047 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (620)
Q Consensus 432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~--~dg--w~~TGDl~~~~~dG 507 (620)
.....++|.|+|+++++|+| +++. +++.|+.|||+|+|+.++.|||++|+.|.+.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12236799999999999999 6654 55667899999999999999999999999999 345 8999999999 699
Q ss_pred cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (620)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~ 584 (620)
+|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++..... .+
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~----------~~-- 456 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKE----------FQ-- 456 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSH----------HH--
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccch----------hh--
Confidence 99999999999997 8999999999999999999999999986644 48999999864321000 00
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 585 SLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 585 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
...++++++.+.++.++.|.++.+++-.|++
T Consensus 457 ~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t 487 (511)
T 3e7w_A 457 LTSAIKKELAASLPAYMIPRKFIYQDHIQMT 487 (511)
T ss_dssp HHHHHHHHHHHHSCGGGSCSEEEECSCCCBC
T ss_pred HHHHHHHHHHhhCchhhCCeeEEEeccCCCC
Confidence 0125666677777777777777777666654
No 21
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=7.1e-69 Score=582.89 Aligned_cols=471 Identities=18% Similarity=0.194 Sum_probs=375.5
Q ss_pred ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (620)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 121 (620)
+|+.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999875 3 57999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeHH
Q 007047 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (620)
Q Consensus 122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 201 (620)
+++|++++|+++.++.+++.+++++++++++|++....... ... .++... .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999975432100 000 111110 111
Q ss_pred HHHh-cCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047 202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (620)
Q Consensus 202 ~l~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 280 (620)
++.. .............++|+++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 1111 111122233456789999999999999999999999999999988877766 7899999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (620)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (620)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8878889999999999864 78999999999999999999999988753110
Q ss_pred hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC----
Q 007047 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (620)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---- 431 (620)
....++ +++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++......
T Consensus 255 ------------~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 011112 4899999999999999999999988 899999999999998776654332
Q ss_pred ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc----CCcccccceEEEccCC
Q 007047 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (620)
Q Consensus 432 ~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~----dgw~~TGDl~~~~~dG 507 (620)
.....++|.|.++++++|+| +++. +++.|+.|||+|+|++++.|||++|+.|.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346899999999999999 6654 455678999999999999999999999999983 569999999999 799
Q ss_pred cEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (620)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~ 584 (620)
+|+|.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++...+. .+
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~----------~~-- 457 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKE----------FK-- 457 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSH----------HH--
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccch----------hh--
Confidence 99999999999997 8999999999999999999999999986543 47899999864210000 00
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 585 SLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 585 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
...++++++.+.++.++.|.++.+++-.|++
T Consensus 458 ~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t 488 (512)
T 3fce_A 458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMT 488 (512)
T ss_dssp HHHHHHHHHHTTSCGGGSCSEEEECSCCCBC
T ss_pred hHHHHHHHHHhhCchhcCCeEEEEecccCCC
Confidence 0114555555555555566665555555543
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=6.6e-68 Score=587.32 Aligned_cols=458 Identities=18% Similarity=0.201 Sum_probs=378.8
Q ss_pred CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (620)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 119 (620)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 34789999999887 999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHH----HhcccccccccCccEEEEecCCcHHHHHHHhhcCC
Q 007047 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (620)
Q Consensus 120 A~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 195 (620)
||+++|++++|+++.++.+++.++++++++++++++..... ...............+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999876531 111111112234444555443221
Q ss_pred ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 007047 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (620)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl 275 (620)
..+.+...... ......+..++++|+++|||||||.||||+++|+++.+.+......+ ++.++|++++++|+
T Consensus 163 --~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 12333333221 22233455789999999999999999999999999999998877776 78999999999999
Q ss_pred hHHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (620)
Q Consensus 276 ~h~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (620)
+|.+++.. .+.+++.|+++++.+. ++..+...++++++|++.++|+++..+.+........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------- 298 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR---------------- 298 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence 99999874 6778999999999876 8999999999999999999999999987643321000
Q ss_pred HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCc
Q 007047 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (620)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~ 432 (620)
.++ +++|.+++||+++++++.+++.+.+++++++.||+||++..++.......
T Consensus 299 -------------------~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 299 -------------------AQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp -------------------TTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred -------------------ccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 011 38999999999999999999999889999999999999865554433333
Q ss_pred cccCccccCc-cCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEE
Q 007047 433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (620)
Q Consensus 433 ~~~~~~G~~~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~ 510 (620)
....++|.|+ ++.+++|+| +++. +++.|+.|||+|+|++++.||+++|+.|.+.| .+|||+|||+|++++||+|+
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3346789887 788999999 6654 55667899999999999999999999999999 79999999999999999999
Q ss_pred EeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcC----hHHHHHHHHHC
Q 007047 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC----EEDTKKWAYSN 574 (620)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~----~~~~~~~~~~~ 574 (620)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|++++. .+++.++++++
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~ 498 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQ 498 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTT
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhC
Confidence 99999999997 7999999999999999999999999986543 5888888864 46777787763
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5e-68 Score=618.26 Aligned_cols=480 Identities=25% Similarity=0.338 Sum_probs=343.9
Q ss_pred CCCCCCCCceecCccCCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHH
Q 007047 16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA 95 (620)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~ 95 (620)
...+....+|++......+ +...|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~ 107 (979)
T 3tsy_A 39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK 107 (979)
T ss_dssp ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH
Confidence 3344556677765433222 34589999999999999999999864 322 689999999999999999999
Q ss_pred CCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccE
Q 007047 96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV 175 (620)
Q Consensus 96 ~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 175 (620)
.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+...... .. ..
T Consensus 108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~ 184 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-VV 184 (979)
T ss_dssp TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-CE
T ss_pred cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-ce
Confidence 9999999999999999999999999999999999999999999999999999999999998765544322211 11 23
Q ss_pred EEEecCCcHHHHHHHhhcCCceeeHHHHHhcCccC--cccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhh
Q 007047 176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253 (620)
Q Consensus 176 vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~ 253 (620)
++.+++... .........+.++....... ........++|+++|+|||||||.||||+++|++++..+....
T Consensus 185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 258 (979)
T 3tsy_A 185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258 (979)
T ss_dssp EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 444443211 01112345566555433221 2233456799999999999999999999999999998876643
Q ss_pred hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHH
Q 007047 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331 (620)
Q Consensus 254 ~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (620)
... .....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 259 ~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 259 DGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp CSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred Hhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 321 01125788999999999999999865 5667999999999876 89999999999999999999999998865211
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCe
Q 007047 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAF 410 (620)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~ 410 (620)
....++ +++|.+++||+++++++.+++.+.+ +++
T Consensus 338 -------------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 372 (979)
T 3tsy_A 338 -------------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAK 372 (979)
T ss_dssp -------------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCE
T ss_pred -------------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCe
Confidence 111112 3899999999999999999999988 899
Q ss_pred eEeecCCCCCCCceeecc----CCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhh
Q 007047 411 LVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486 (620)
Q Consensus 411 v~~~YG~TE~~~~~~~~~----~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t 486 (620)
+++.||+||++.+++.+. .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|+.++.|||++|+.|
T Consensus 373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~t 450 (979)
T 3tsy_A 373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAAT 450 (979)
T ss_dssp EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred EEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhhh
Confidence 999999999998766542 11233458899999999999999 4433 45667789999999999999999999999
Q ss_pred hccc-cCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEc
Q 007047 487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP 562 (620)
Q Consensus 487 ~~~~-~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~ 562 (620)
.+.| .+|||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++
T Consensus 451 ~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~ 529 (979)
T 3tsy_A 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529 (979)
T ss_dssp HHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred hhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEE
Confidence 9999 7999999999999999999999999999997 7999999999999999999999999987654 478899986
Q ss_pred Ch
Q 007047 563 CE 564 (620)
Q Consensus 563 ~~ 564 (620)
.+
T Consensus 530 ~~ 531 (979)
T 3tsy_A 530 SK 531 (979)
T ss_dssp --
T ss_pred CC
Confidence 43
No 24
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.4e-68 Score=578.58 Aligned_cols=468 Identities=25% Similarity=0.301 Sum_probs=373.0
Q ss_pred CCCCCcccHHHHHHHHHHhCCC-CceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH
Q 007047 36 SVDSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (620)
Q Consensus 36 ~~~~~~~ti~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~ 114 (620)
+...+++++.++|.++++++|+ ++|+++. + +++||+||.++++++|..|. .|++|+++++|++++
T Consensus 16 ~~~~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~ 81 (505)
T 3nyq_A 16 PRGSHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMET 81 (505)
T ss_dssp --------CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHH
T ss_pred cCCcccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHH
Confidence 3445678999999999999997 9999874 3 68999999999999998774 489999999999999
Q ss_pred HHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcC
Q 007047 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (620)
Q Consensus 115 ~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 194 (620)
++++|||+++|++++|+++.++.+++.+++++++++++|++.+... ......+..+ .+...
T Consensus 82 ~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~------------ 142 (505)
T 3nyq_A 82 GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR------------ 142 (505)
T ss_dssp HHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT------------
T ss_pred HHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc------------
Confidence 9999999999999999999999999999999999999999865210 0011111111 11100
Q ss_pred CceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecC
Q 007047 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (620)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 274 (620)
...........++|+++++|||||||.||||++||+++.+.+......+ ++.++|++++.+|
T Consensus 143 -------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p 204 (505)
T 3nyq_A 143 -------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLP 204 (505)
T ss_dssp -------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCC
T ss_pred -------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEecc
Confidence 0111223345789999999999999999999999999999998877776 7889999999999
Q ss_pred hhHHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047 275 LAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (620)
Q Consensus 275 l~h~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (620)
++|..++.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 205 ~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 266 (505)
T 3nyq_A 205 LFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE----------------- 266 (505)
T ss_dssp TTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-----------------
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-----------------
Confidence 999999874 6778999999999876 889999999 88999999999999998764321100
Q ss_pred HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCc
Q 007047 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (620)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~ 432 (620)
....++ ++|.+++||+++++++.+++.+.++.++++.||+||+++.++......
T Consensus 267 -----------------~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~- 320 (505)
T 3nyq_A 267 -----------------LAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE- 320 (505)
T ss_dssp -----------------HHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-
T ss_pred -----------------hhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-
Confidence 011122 789999999999999999999988999999999999987766554433
Q ss_pred cccCccccCccCeeEEEeecCCCCCCCC-CCCCCceEEEecCCcccccCCChhhhhccc-cCCcccccceEEEccCCcEE
Q 007047 433 CMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (620)
Q Consensus 433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~-~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~-~dgw~~TGDl~~~~~dG~l~ 510 (620)
...+++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.|||++|+.|.+.| .+|||+|||+|++++||+|+
T Consensus 321 ~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~ 399 (505)
T 3nyq_A 321 PRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVR 399 (505)
T ss_dssp CCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEE
T ss_pred CCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEE
Confidence 3448999999999999999 67665554 447899999999999999999999999999 69999999999999999999
Q ss_pred Eeecc-cCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhcc
Q 007047 511 IIDRK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (620)
Q Consensus 511 ~~GR~-~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (620)
|+||+ ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+.. . . ...
T Consensus 400 ~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~-------~--~------~~~ 463 (505)
T 3nyq_A 400 IVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA-------A--P------PAL 463 (505)
T ss_dssp EEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT-------S--C------CCH
T ss_pred EeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC-------C--C------CCH
Confidence 99998 599997 7999999999999999999999999987653 5899999986421 0 0 011
Q ss_pred HHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 587 VQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 587 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
.++++++.+.++.++.|..+.+++-.|++
T Consensus 464 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 492 (505)
T 3nyq_A 464 GTLADHVAARLAPHKRPRVVRYLDAVPRN 492 (505)
T ss_dssp HHHHHHHHHHTCGGGSCSEEEECSCCCC-
T ss_pred HHHHHHHHhhCCCCcCccEEEEECCCCCC
Confidence 26777888888888888888887777654
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.2e-68 Score=576.47 Aligned_cols=475 Identities=16% Similarity=0.150 Sum_probs=372.9
Q ss_pred cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
++++.++|.++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (620)
|+++|++++|+++.++.+++.+++++++++++|++.+....+ ... . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC-c---------------------ccch
Confidence 999999999999999999999999999999999987643211 011 1 1122
Q ss_pred HHHHhcC--ccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 007047 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (620)
Q Consensus 201 ~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~ 278 (620)
.++.... ...........++|+++++|||||||.||||++||+++.+.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221111 0111223456789999999999999999999999999998776654431 1267889999999999998
Q ss_pred HHHHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (620)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (620)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888777888999999998764 78999999999999999999999987653110
Q ss_pred HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC--
Q 007047 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (620)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-- 431 (620)
....++ +++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 258 --------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 000111 3899999999999999999998888 899999999999998776554322
Q ss_pred --ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccc----cCCcccccceEEEcc
Q 007047 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (620)
Q Consensus 432 --~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~----~dgw~~TGDl~~~~~ 505 (620)
.....++|+|+|+++++|+| +++. +++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336899999999999999 6654 45567899999999999999999999999998 357999999999999
Q ss_pred CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC----ceEEEEEEcChHHHHHHHHHCCCCCCHH
Q 007047 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFL 581 (620)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~ 581 (620)
||++++.||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|+++++....+ ..
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~-------~~-- 462 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF-------DR-- 462 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGC-------SS--
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccc-------cc--
Confidence 9999999999999997 7999999999999999999999999986532 47889999865321000 00
Q ss_pred HHhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 582 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
+.....++++++.+.++.++.|.++.+++-.|++
T Consensus 463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t 496 (521)
T 3l8c_A 463 ELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLT 496 (521)
T ss_dssp HHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBC
T ss_pred chhhHHHHHHHHHhhCccccCCeEEEEecccCCC
Confidence 0001125566666666667777777666666654
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.3e-68 Score=574.09 Aligned_cols=474 Identities=21% Similarity=0.210 Sum_probs=366.9
Q ss_pred ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 007047 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (620)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 121 (620)
+||.++|.++++++||++|+++. + +++||+||.++++++|++|++. +||+|+|+++|++++++++|||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999864 3 5799999999999999999986 8999999999999999999999
Q ss_pred HhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCce-eeH
Q 007047 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSW 200 (620)
Q Consensus 122 ~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~ 200 (620)
+++|++++|+++.++.+++.+++++++++++|++............ ...+..+.......... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence 9999999999999999999999999999999998775443321111 01111111100000000 00000000 001
Q ss_pred HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (620)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 280 (620)
+.+...............++|+++++|||||||.||||++||+++...+......+ +++++|++++.+|++|.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 11111111111223346789999999999999999999999999999988877766 7889999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007047 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (620)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (620)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 271 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------- 271 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence 9888889999999999876 999999999999999999999999988652110
Q ss_pred cCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCC-ccccCcc
Q 007047 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTA 438 (620)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~~ 438 (620)
...++|.+++||+++++++.+++.+ +++++++.||+||+++.++...... ....+++
T Consensus 272 ---------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 272 ---------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp ---------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred ---------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 0027899999999999999999987 5999999999999987655443322 3345789
Q ss_pred ccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCe
Q 007047 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518 (620)
Q Consensus 439 G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~ 518 (620)
|.|+++++++|+| ++ .|+.|||+|+|+.++.||+++++.|.+ |.+|||+|||+|++|+||+++++||+||+
T Consensus 330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDL 400 (501)
T ss_dssp BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccce
Confidence 9999999999999 43 345799999999999999999999988 88999999999999999999999999999
Q ss_pred EEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHH
Q 007047 519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS 595 (620)
Q Consensus 519 i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (620)
||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|++++..+. ...++++++.+
T Consensus 401 ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~~~l~~~l~~ 461 (501)
T 3ipl_A 401 IIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SKAQLIAYLSK 461 (501)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHHHHHHHHHH
T ss_pred EEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CHHHHHHHHHh
Confidence 996 8999999999999999999999999987654 4778888863210 01144455555
Q ss_pred HHHHHHHHCCCccCCcccc
Q 007047 596 ELKNAAERNKVIFANWDTG 614 (620)
Q Consensus 596 ~i~~~~~~~~~~~~~~~~~ 614 (620)
.++.++.|.++.+++-.|+
T Consensus 462 ~L~~~~~P~~i~~v~~lP~ 480 (501)
T 3ipl_A 462 HLAKYKVPKHFEKVDTLPY 480 (501)
T ss_dssp HSCGGGSCSEEEECSSCC-
T ss_pred hCccccCCCEEEEecccCC
Confidence 5555555555555554443
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2.7e-66 Score=569.21 Aligned_cols=494 Identities=16% Similarity=0.111 Sum_probs=318.8
Q ss_pred CCCCcccHHHHHHHHHHhCCCCceeEeeeccCC----CCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 007047 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP 112 (620)
Q Consensus 37 ~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~ 112 (620)
...+..|+.++|.++|+++||++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 90 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL 90 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence 3355688999999999999999999976 32 12234789999999999999999999999 7999999999999
Q ss_pred hHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhh
Q 007047 113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (620)
Q Consensus 113 e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 192 (620)
++++++|||+++|++++|+++.++.+++.+++++++++++|+++....... ......++....
T Consensus 91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~----------- 153 (562)
T 3ite_A 91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN----------- 153 (562)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-----------
T ss_pred HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-----------
Confidence 999999999999999999999999999999999999999999876543221 011122222111
Q ss_pred cCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcc---cccCCCCCCcEE
Q 007047 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVY 269 (620)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~ 269 (620)
..+.+...... .........++++++++|||||||.||||++||+++.+.+..+...+. .....+...+++
T Consensus 154 -----~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (562)
T 3ite_A 154 -----QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF 227 (562)
T ss_dssp -----HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEE
T ss_pred -----hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceE
Confidence 11222222211 111223456788999999999999999999999999988776544321 111257788999
Q ss_pred EEecChhHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007047 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (620)
Q Consensus 270 ~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (620)
++..|++|..++...+.++..|+++++.+. .+..+.+.++++++|+++++|+++..+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------ 289 (562)
T 3ite_A 228 LCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------ 289 (562)
T ss_dssp ECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------
T ss_pred EEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------
Confidence 999999998887777888999999988764 467888999999999999999987764210
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeec
Q 007047 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (620)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~ 427 (620)
..++ +++|.+++||+++++++.+.|++.+++.+++.||+||++..++..
T Consensus 290 -----------------------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 338 (562)
T 3ite_A 290 -----------------------PEDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338 (562)
T ss_dssp -----------------------GGGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred -----------------------cccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence 0011 389999999999999999999988899999999999999877776
Q ss_pred cCCCccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCC--cccccceEEEcc
Q 007047 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILP 505 (620)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dg--w~~TGDl~~~~~ 505 (620)
........+++|.|+++++++|++ ++++ .+++.|+.|||+|+|+.++.|||++|+.|...+.+| ||+|||+|++|+
T Consensus 339 ~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~ 416 (562)
T 3ite_A 339 RILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA 416 (562)
T ss_dssp ECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT
T ss_pred eecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC
Confidence 555444457899999999999998 4433 456677899999999999999999999998887777 999999999999
Q ss_pred CCcEEEeecccCeEEcCCceeeccHHHHHHHhcC-cCcceEEEEecCCC---c-eEEEEEEcChHHHHHHHHHCCCCCCH
Q 007047 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLK---S-MLVAVVVPCEEDTKKWAYSNGHAGSF 580 (620)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~-p~V~~~~V~~~~~~---~-~~~a~vv~~~~~~~~~~~~~~~~~~~ 580 (620)
||+|+|+||+||+||+ +|++|+|.|||++|.+| |.+.+++|++.+++ + .+++++............. .....
T Consensus 417 dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~ 493 (562)
T 3ite_A 417 DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRW--INENY 493 (562)
T ss_dssp TSCEEEEEEC----------------------------------------------------------------------
T ss_pred CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccc--cccch
Confidence 9999999999999997 89999999999999998 88888888876654 2 3444444332211110000 00000
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHCCCccCCccc
Q 007047 581 LELCSLVQLQNYILSELKNAAERNKVIFANWDT 613 (620)
Q Consensus 581 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 613 (620)
. ....++++++.++++.++.|+.+.+++-.|
T Consensus 494 ~--~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP 524 (562)
T 3ite_A 494 K--EINNSLRQACEQTLPAYMVPDFIIPISFIP 524 (562)
T ss_dssp ---------------------------------
T ss_pred h--hHHHHHHHHHHhhCCcccCCcEEEEeccCC
Confidence 0 012256666666666666666666666555
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.6e-66 Score=569.53 Aligned_cols=447 Identities=17% Similarity=0.222 Sum_probs=362.2
Q ss_pred CCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHH
Q 007047 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (620)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 118 (620)
....|+.++|.++++++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 34689999999999999999999986 42 23378999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEecCCCCC---hhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCC
Q 007047 119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (620)
Q Consensus 119 lA~~~~G~v~vpi~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 195 (620)
|||+++|++++|+++.++ .+++.++++.+++++++++.+....+........+....+..+
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 146 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI---------------- 146 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence 999999999999999884 4789999999999999999887766543321111111111111
Q ss_pred ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 007047 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (620)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl 275 (620)
..+++.... ..........++|+++++|||||||.||||++||++++..+......+ +++.+|++++++|+
T Consensus 147 ---~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 147 ---ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp ---EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred ---echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 111111100 112233456789999999999999999999999999999998877766 88999999999999
Q ss_pred hHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007047 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (620)
Q Consensus 276 ~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (620)
+|.+++.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+.+...
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 281 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE---------------- 281 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence 99999986 7778999999999864 7899999999999999999999999886532111
Q ss_pred HHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC------CeeEeecCCCCCCCc
Q 007047 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP 423 (620)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~TE~~~~ 423 (620)
.....++ +++|.+++||+++++++.++|.+.++ .++++.||+||++++
T Consensus 282 ------------------~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 282 ------------------KKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp ------------------GGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred ------------------hccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 0111122 38999999999999999999988873 479999999999988
Q ss_pred eeeccCC--------------------------CccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCccc
Q 007047 424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (620)
Q Consensus 424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~ 477 (620)
++..... ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+|++++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCcccc
Confidence 7754321 11233688999988 88888 443 356667889999999999999
Q ss_pred ccCCChhhhhccccC-------C--cccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHH-hcCcCcc--eE
Q 007047 478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DI 545 (620)
Q Consensus 478 gy~~~~~~t~~~~~d-------g--w~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l-~~~p~V~--~~ 545 (620)
|||++|+.|.++|.+ | ||+|||+|++| ||+|+|+||+||+||+ +|++|+|.|||++| ..||.|. +|
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~ 489 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKC 489 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccE
Confidence 999999999999943 5 99999999998 9999999999999998 79999999999999 8999998 78
Q ss_pred EEEecCC--CceEEEEEEcC
Q 007047 546 WVYGDSL--KSMLVAVVVPC 563 (620)
Q Consensus 546 ~V~~~~~--~~~~~a~vv~~ 563 (620)
+|++.++ .+.+++++++.
T Consensus 490 ~v~~~~~~~~~~~~~~v~~~ 509 (590)
T 3kxw_A 490 AAFVIQEEHEYKLTVMCEVK 509 (590)
T ss_dssp EEEEEEETTEEEEEEEEEES
T ss_pred EEEEecCCCCceEEEEEEec
Confidence 8887543 35778888764
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=8.9e-65 Score=559.62 Aligned_cols=450 Identities=19% Similarity=0.251 Sum_probs=361.1
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q 007047 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 110 (620)
Q Consensus 31 ~~~~~~~~~~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n 110 (620)
...+|....+..|+.++|.++++++|+.+++.. ..+..+++||+||.++++++|++|++.|+++||+|+++++|
T Consensus 10 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (576)
T 3gqw_A 10 THSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAET 83 (576)
T ss_dssp ----CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCS
T ss_pred cCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 456777778889999999999999999877742 22334789999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHhCCCEEEecCCCCC-------hhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCc
Q 007047 111 CPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (620)
Q Consensus 111 ~~e~~~~~lA~~~~G~v~vpi~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 183 (620)
++++++++|||+++|++++|+++.++ .+++.++++.++++++|++.+....+....... ....
T Consensus 84 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~--------- 153 (576)
T 3gqw_A 84 SSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PELH--------- 153 (576)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTCE---------
T ss_pred cHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccce---------
Confidence 99999999999999999999999998 789999999999999999988765543322111 1111
Q ss_pred HHHHHHHhhcCCceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhh-cccccCC
Q 007047 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFEDK 262 (620)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~-~~~~~~~ 262 (620)
....... ..............++|+++++|||||||.||||+++|++++..+...... + +
T Consensus 154 -------------~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~ 214 (576)
T 3gqw_A 154 -------------VLSHAWF-KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI-----K 214 (576)
T ss_dssp -------------EEEHHHH-HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-----C
T ss_pred -------------ecchhhh-hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-----C
Confidence 1111111 111112222334578999999999999999999999999999888765433 3 7
Q ss_pred CCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHh
Q 007047 263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (620)
Q Consensus 263 ~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 336 (620)
+.++|++++++|++|.+++.. .+.++..|+++++... ++..+++.++++++|+++++|+++..+.+.+...
T Consensus 215 ~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--- 291 (576)
T 3gqw_A 215 LRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK--- 291 (576)
T ss_dssp CCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH---
T ss_pred CCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc---
Confidence 889999999999999999875 5667889999888763 7889999999999999999999998775432211
Q ss_pred hchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc------CCe
Q 007047 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAF 410 (620)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~------~~~ 410 (620)
.....++ +++|.+++||+++++++.++|.+.+ +..
T Consensus 292 -------------------------------~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~ 332 (576)
T 3gqw_A 292 -------------------------------DLAELDL--------SCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKT 332 (576)
T ss_dssp -------------------------------HHTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGG
T ss_pred -------------------------------ccccCCh--------hhhHhhhccCccCCHHHHHHHHHHHhhcCCCccc
Confidence 1111112 4899999999999999999998887 678
Q ss_pred eEeecCCCCCCCceeeccCCCc---------------------------cccCccccCccCeeEEEeecCCCCCCCCCCC
Q 007047 411 LVQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDP 463 (620)
Q Consensus 411 v~~~YG~TE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g 463 (620)
+++.||+||++++++....... ....++|+|+|+++++|+| +++. +++.|
T Consensus 333 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g 409 (576)
T 3gqw_A 333 FMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGM--PVAER 409 (576)
T ss_dssp EEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSC--BCCTT
T ss_pred ccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCC--CCCCC
Confidence 9999999999988776543210 1113789999999999999 6654 45567
Q ss_pred CCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcc
Q 007047 464 PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543 (620)
Q Consensus 464 ~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~ 543 (620)
+.|||+|+|+.++.|||++++.+.+.+.+|||+|||+|++ +||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.
T Consensus 410 ~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~ 487 (576)
T 3gqw_A 410 VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIH 487 (576)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCC
T ss_pred CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccc
Confidence 8999999999999999999999998889999999999999 79999999999999998 799999999999999999999
Q ss_pred eEEEEecCC-CceEEEEEEc
Q 007047 544 DIWVYGDSL-KSMLVAVVVP 562 (620)
Q Consensus 544 ~~~V~~~~~-~~~~~a~vv~ 562 (620)
+++|++..+ ++.++++++.
T Consensus 488 ~~~vv~~~~~~~~~~~~~~~ 507 (576)
T 3gqw_A 488 SGDAIAFVTAQEKIILQIQC 507 (576)
T ss_dssp TTSEEEEECTTSCEEEEEEC
T ss_pred cccEEEEEcCCccEEEEEEE
Confidence 877765433 2344444443
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.5e-64 Score=600.19 Aligned_cols=464 Identities=20% Similarity=0.228 Sum_probs=382.4
Q ss_pred cccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHH
Q 007047 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (620)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 120 (620)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999865 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCcHHHHHHHhhcCCceeeH
Q 007047 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (620)
Q Consensus 121 ~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (620)
|+++|+++||++|.++.+++.++++++++++++++......+.. .+.....+.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence 99999999999999999999999999999999998765433211 111223333332110
Q ss_pred HHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 007047 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (620)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 280 (620)
. .. ..........++++||++|||||||.||||+++|+++.+.. .....+ +++.+|+++++.|++|..+
T Consensus 593 --~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 593 --F-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp --G-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred --c-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 0 00 11122234578999999999999999999999999998763 333333 7789999999999999888
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007047 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (620)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (620)
...++.++..|+++++.+. ++..+.+.+.++++|+++++|++++.+.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 8778889999999999864 789999999999999999999999988642100
Q ss_pred hhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhc-CCeeEeecCCCCCCCceeeccCCC---c
Q 007047 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (620)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~ 432 (620)
.+ +++|.+++|||++++++.+.|.+.+ +.+++|.||+||++++++...... .
T Consensus 718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 01 2899999999999999999888776 478999999999998877654322 2
Q ss_pred cccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhcccc-------CCcccccceEEEcc
Q 007047 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP 505 (620)
Q Consensus 433 ~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~-------dgw~~TGDl~~~~~ 505 (620)
....++|+|++|++++|+| +++. +++.|+.|||+|+|++++.||+++|+.|.+.|. ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2336899999999999999 6654 555678999999999999999999999999992 34999999999999
Q ss_pred CCcEEEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHH
Q 007047 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE 582 (620)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~ 582 (620)
||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.++|+|+++..
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~----------------- 912 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ----------------- 912 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS-----------------
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC-----------------
Confidence 9999999999999998 7999999999999999999999999986543 589999997531
Q ss_pred HhccHHHHHHHHHHHHHHHHHCCCccCCccccc
Q 007047 583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGC 615 (620)
Q Consensus 583 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 615 (620)
....++++++.+.++.++.|+.+.+++-.|.+
T Consensus 913 -~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t 944 (1304)
T 2vsq_A 913 -LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLT 944 (1304)
T ss_dssp -SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCC
T ss_pred -CCHHHHHHHHHHhChHhhhccEEEEecccCCC
Confidence 01236777777888888888877776655543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.3e-59 Score=501.29 Aligned_cols=401 Identities=16% Similarity=0.198 Sum_probs=312.1
Q ss_pred CcccHHHHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHH
Q 007047 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (620)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 119 (620)
..+++.++|.++++++||++|+++....++..+.++++||+||.++++++|++|++.|+ +||+|+|+++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35899999999999999999999871101233445789999999999999999999996 99999999999999999999
Q ss_pred HHHhCCCEEEecCC---CCChhHHHHHHhhcCccEEEEcchhHHHhccccccccc-CccEEEEecCCcHHHHHHHhhcCC
Q 007047 120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI 195 (620)
Q Consensus 120 A~~~~G~v~vpi~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~ 195 (620)
||+++|++++|+++ .++.+++.+++++++++++|++......+......... ....++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 77899999999999999999998877655443321110 111222222110
Q ss_pred ceeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCC------CcEE
Q 007047 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY 269 (620)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~ 269 (620)
. ............++++++|+|||||||.||||++||+++...+......+ .+.. +|++
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 0 00111223445789999999999999999999999999999888776655 4555 8999
Q ss_pred EEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007047 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (620)
Q Consensus 270 ~~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (620)
++++|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++| +..+|+++..++.....
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------- 301 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------- 301 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence 99999999999764 6778999999999862 889999999999999 88999988877642110
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcC------CeeEeecCC
Q 007047 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL 417 (620)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~YG~ 417 (620)
.......++ ++||.+++||+++++++.++|.+.++ ..+++.||+
T Consensus 302 ----------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 302 ----------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ----------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ----------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 001111122 48999999999999999999998873 479999999
Q ss_pred CCCCCceeeccCCC------------------------ccccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecC
Q 007047 418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (620)
Q Consensus 418 TE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~ 473 (620)
||++..++...... .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+|+
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence 99998877655432 123468999999 9999999 5432 4556778999999999
Q ss_pred CcccccCCChhhhhccc------------cCCcccccceEEEccCCcEEEeec
Q 007047 474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (620)
Q Consensus 474 ~v~~gy~~~~~~t~~~~------------~dgw~~TGDl~~~~~dG~l~~~GR 514 (620)
+++.|||++|+.|.++| .+|||+|||+|+++ ||+|+|+||
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999998 36699999999996 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.2e-45 Score=380.27 Aligned_cols=296 Identities=18% Similarity=0.127 Sum_probs=241.3
Q ss_pred CCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEec
Q 007047 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (620)
Q Consensus 219 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~ 298 (620)
.+|+|+|+|||||||.||||++||+++.+.+......+ +++++|++++++|++|.+|+...+.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46889999999999999999999999999998887777 8899999999999999999988888899999999886
Q ss_pred CChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHhHHHHH
Q 007047 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (620)
Q Consensus 299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (620)
. ....++.++++++|++.++|+++..+++... ...++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence 4 2234677899999999999999998864211 01112
Q ss_pred HHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCceeeccCCCccccCccccCccCeeEEEeecCCCCCC
Q 007047 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (620)
Q Consensus 379 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~i~i~~~~~~~~~ 458 (620)
+++|.+++||+++++++.+++++ +++++++.||+||++..++....+.... +++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 38999999999999999999987 5999999999999998877766555444 7889999999887754
Q ss_pred CCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCCcEEEeecccCeEEcCCceeeccHHHHHHH--
Q 007047 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (620)
Q Consensus 459 ~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG~l~~~GR~~d~i~~~~G~~v~p~~iE~~l-- 536 (620)
.|||+++|+.. .+|||+|||+|++|+|| ++++||+||+||+ +|++|+|.+||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 69999998633 37899999999999888 6677999999997 79999999999877
Q ss_pred -hcCcCcceEEEE-ecCCC---ceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHHHHHHCCCccCCc
Q 007047 537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANW 611 (620)
Q Consensus 537 -~~~p~V~~~~V~-~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 611 (620)
.+||.|.+|+|+ +.+|+ +.++|+|+....+.. ..++++++.++++.++.|+++.+++-
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~-----------------~~~l~~~l~~~L~~~~~P~~i~~v~~ 334 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEAL-----------------TERLTAEIRSRVSTYENPKHIYFAKA 334 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHH-----------------HHHHHHHHHHHSCGGGSCSCEEEESS
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcC-----------------HHHHHHHHHhhCCCCCCceEEEEECC
Confidence 478999999887 44433 478888887643211 12566777777777777887777776
Q ss_pred cccc
Q 007047 612 DTGC 615 (620)
Q Consensus 612 ~~~~ 615 (620)
.|++
T Consensus 335 lP~t 338 (358)
T 4gs5_A 335 FAKT 338 (358)
T ss_dssp CCBC
T ss_pred cCCC
Confidence 6654
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.2e-43 Score=372.59 Aligned_cols=318 Identities=16% Similarity=0.164 Sum_probs=247.2
Q ss_pred CCCC-CCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH-HHHHHhhcCcE
Q 007047 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (620)
Q Consensus 216 ~~~~-~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~ 293 (620)
...+ +++++++|||||||.||+|++||+++...+......+. ..++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3456 89999999999999999999999999877665533221 12678999999999987655544 56677999999
Q ss_pred EEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q 007047 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (620)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (620)
+++.+. ++..+++.++++++|+++++|+++..+++.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 998865 89999999999999999999999999876543221000
Q ss_pred hHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCc-eeeccCCCccccCccccCccCeeEEEee
Q 007047 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 451 (620)
Q Consensus 373 ~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~~G~~~~~~~i~i~~ 451 (620)
.+ +++|.+++||+++++++.+++++.||+++++.||+||+++. +...... . ...|.+.+++.++|+|
T Consensus 204 ~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 RE--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID 271 (436)
T ss_dssp TS--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred cc--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence 01 38999999999999999999999999999999999999654 3332211 1 3356777899999999
Q ss_pred cCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccCC------c---EEEeecccCeEEcC
Q 007047 452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS 522 (620)
Q Consensus 452 ~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~dG------~---l~~~GR~~d~i~~~ 522 (620)
++++ .+++.|+.|||+|+|. +.+.|.++||+|||+|++++|| + +++.||+||+||+
T Consensus 272 ~~~g--~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~- 336 (436)
T 3qov_A 272 PETG--EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII- 336 (436)
T ss_dssp TTTC--SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred CCCC--CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence 3333 4566778999999983 3455678999999999999998 5 6999999999998
Q ss_pred CceeeccHHHHHHHhcCcCcceEEEEecCC---CceEEEEEEcChHHHHHHHHHCCCCCCHHHHhccHHHHHHHHHHHHH
Q 007047 523 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599 (620)
Q Consensus 523 ~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 599 (620)
+|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++ +...+ . .....++++.+.+.++.
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~---------~---~~~~~~l~~~l~~~l~~ 403 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTD---------N---YIELEKIRRDIIRQLKD 403 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCC---------C---HHHHHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccccc---------c---hhhHHHHHHHHHHHHHH
Confidence 799999999999999999999999988654 36899999986 31000 0 00112667777777877
Q ss_pred H-HHHCCCccCC
Q 007047 600 A-AERNKVIFAN 610 (620)
Q Consensus 600 ~-~~~~~~~~~~ 610 (620)
+ ..+..+.+++
T Consensus 404 ~~~~p~~i~~v~ 415 (436)
T 3qov_A 404 EILVTPKVKLVK 415 (436)
T ss_dssp HHSSCCEEEEEC
T ss_pred hcCCceEEEEeC
Confidence 7 4555555555
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=5.6e-42 Score=364.04 Aligned_cols=334 Identities=17% Similarity=0.156 Sum_probs=253.4
Q ss_pred eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh-
Q 007047 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL- 275 (620)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl- 275 (620)
..+.+++....+ .......++++++++|||||||.||+|++||+++...+......+. ..++.++|++++.+|+
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~ 144 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYG 144 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEccccc
Confidence 344555554331 1223456789999999999999999999999999877654433211 1267899999999998
Q ss_pred hHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047 276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (620)
Q Consensus 276 ~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (620)
+|..++...+.++..|+++++.+. +++.+++.++++++|+++++|+++..+.+.........
T Consensus 145 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 207 (437)
T 2y27_A 145 LFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP----------------- 207 (437)
T ss_dssp SSHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 677777777788999999988766 89999999999999999999999999876443211000
Q ss_pred HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCc-eeeccCCCcc
Q 007047 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMC 433 (620)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~ 433 (620)
.+ +++|.+++||+++++++.+++++.+|+++++.||+||+++. ++.......
T Consensus 208 ------------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~- 260 (437)
T 2y27_A 208 ------------------VQ--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK- 260 (437)
T ss_dssp ------------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC-
T ss_pred ------------------cc--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC-
Confidence 01 38999999999999999999998889999999999998543 333222111
Q ss_pred ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc-CCcE---
Q 007047 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV--- 509 (620)
Q Consensus 434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~-dG~l--- 509 (620)
...+.+.+++.++|+| +++ ..+++.|+.|||+|+|. +.++|.++||+|||+|++++ ||++
T Consensus 261 --~g~~~~~~~~~~~i~d-~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~ 324 (437)
T 2y27_A 261 --DGPTIWEDHFYPEIID-PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRR 324 (437)
T ss_dssp --SSCEECTTTEEEEEEC-TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCE
T ss_pred --CceeEccCceEEEEEc-CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccc
Confidence 1255677899999999 443 24566788999999982 34556789999999999998 6986
Q ss_pred --EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC---CceEEEEEEcChHHHHHHHHHCCCCCCHHHHh
Q 007047 510 --KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (620)
Q Consensus 510 --~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~ 584 (620)
++.||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++++... . ..
T Consensus 325 i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~----------~---~~ 390 (437)
T 2y27_A 325 MEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP----------D---TA 390 (437)
T ss_dssp ECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT----------C---HH
T ss_pred cCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc----------h---hh
Confidence 899999999997 799999999999999999999988877432 3689999998754210 0 00
Q ss_pred ccHHHHHHHHHHHHHHH-HHCCCccC
Q 007047 585 SLVQLQNYILSELKNAA-ERNKVIFA 609 (620)
Q Consensus 585 ~~~~~~~~~~~~i~~~~-~~~~~~~~ 609 (620)
...++++++.+.++.+. .+..+.++
T Consensus 391 ~~~~l~~~l~~~l~~~~~~p~~v~~v 416 (437)
T 2y27_A 391 AIQVAKQALAYDIKSLIGVTAVINVL 416 (437)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 12367788888888875 45555555
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=8.9e-42 Score=363.16 Aligned_cols=334 Identities=16% Similarity=0.130 Sum_probs=251.9
Q ss_pred eeeHHHHHhcCccCcccCCCCCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh-
Q 007047 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL- 275 (620)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl- 275 (620)
..+.+++....+ .......++++++++|||||||.||+|++||+++...+......+. ..++.++|++++.+|+
T Consensus 72 ~~~~~~l~~~~p---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 72 FSTKNDLRDNYP---FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYG 146 (443)
T ss_dssp CBCHHHHHTTTT---TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCS
T ss_pred CCcHHHHHhhCC---CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCc
Confidence 345566654331 1223456789999999999999999999999999877655433211 1267899999999998
Q ss_pred hHHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007047 276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (620)
Q Consensus 276 ~h~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (620)
+|..++...+.++..|+++++.+. +++.+++.++++++|+++++|+++..|.+.........
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 209 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------- 209 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 577777667778899999988776 89999999999999999999999999876433211000
Q ss_pred HHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHHHhcCCeeEeecCCCCCCCc-eeeccCCCcc
Q 007047 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMC 433 (620)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~ 433 (620)
.+ +++|.+++||+++++++.+++++.+|+++++.||+||+++. ++.......
T Consensus 210 ------------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~- 262 (443)
T 2y4o_A 210 ------------------AE--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK- 262 (443)
T ss_dssp ------------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC-
T ss_pred ------------------cc--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC-
Confidence 01 38999999999999999999998889999999999998543 333222111
Q ss_pred ccCccccCccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEccC-CcE---
Q 007047 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV--- 509 (620)
Q Consensus 434 ~~~~~G~~~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d-G~l--- 509 (620)
...+.+.+++.++|+| +++ ..+++.|+.|||+|+|. +.+.|.++||+|||+|++++| |++
T Consensus 263 --~g~~~~~~~~~~~i~d-~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~ 326 (443)
T 2y4o_A 263 --DGPVIWEDHFYPEIID-PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRR 326 (443)
T ss_dssp --CSEEECTTTEEEEEEC-TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCE
T ss_pred --CceEEccCCeEEEEEc-CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccc
Confidence 1245567899999999 442 24566778999999982 344567899999999999999 987
Q ss_pred --EEeecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC---CceEEEEEEcCh--HHHHHHHHHCCCCCCHHH
Q 007047 510 --KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLE 582 (620)
Q Consensus 510 --~~~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~ 582 (620)
++.||.||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +... .
T Consensus 327 l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~----------~--- 392 (443)
T 2y4o_A 327 LAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASV----------T--- 392 (443)
T ss_dssp ECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTC----------C---
T ss_pred cCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccc----------h---
Confidence 899999999997 799999999999999999999998887432 358899999875 2100 0
Q ss_pred HhccHHHHHHHHHHHHHHH-HHCCCccC
Q 007047 583 LCSLVQLQNYILSELKNAA-ERNKVIFA 609 (620)
Q Consensus 583 ~~~~~~~~~~~~~~i~~~~-~~~~~~~~ 609 (620)
.....++++++.+.++.+. .+..+.++
T Consensus 393 ~~~~~~l~~~l~~~l~~~~~~p~~v~~v 420 (443)
T 2y4o_A 393 DGERAALARELQHRIKTMVGVSSGVTVL 420 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHhCCceEEEEe
Confidence 0011267777888887764 45555555
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=4.5e-29 Score=258.55 Aligned_cols=239 Identities=18% Similarity=0.157 Sum_probs=171.6
Q ss_pred CCCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEEE
Q 007047 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (620)
Q Consensus 217 ~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~l~~G~~~v 295 (620)
..++++++++|||||||.||+|+++|+++...+......+. ..++..+|++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 47889999999999999999999999999998875433221 1267889999999999 99999887777788999443
Q ss_pred EecCChH-----------------------HHHHHHhhcCCcEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007047 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (620)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (620)
....++. .+++.++++++|++.++|+++..|++....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~-------------------- 225 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV-------------------- 225 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence 3333666 777899999999999999999998754211
Q ss_pred HHHHhhccCCCCchhHHHHHhHHHHHHHcCCcEEEEEeecCCCCHHHHHHHH-Hhc-CCeeEeecCCCCCCCceeeccCC
Q 007047 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 430 (620)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~ 430 (620)
...+++ ++|.+++||+++++++.++++ +.| ++++++.||+||+++++..+..
T Consensus 226 -----------------~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 226 -----------------VLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp -----------------HHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred -----------------hccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 111122 899999999999999999999 888 8999999999999876644321
Q ss_pred CccccCccccC------ccCeeEEEeecCCCCCCCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEc
Q 007047 431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504 (620)
Q Consensus 431 ~~~~~~~~G~~------~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~ 504 (620)
.++|.+ +|+++++|+|.+++ .+++.|+.|||+|++... +.+ --+|+|||++...
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g--~~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~~ 339 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVDSITA--QTVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIRL 339 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEECTTTC--SBCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEECCCCC--cCCCCCCceEEEEEEcCc------------ccc-cccccCCceEEEe
Confidence 247888 99999999992244 466678999999997321 111 1137788887764
Q ss_pred cC--C-------cEEEeecccCeEEcCCc
Q 007047 505 PN--G-------VVKIIDRKKNLIKISQG 524 (620)
Q Consensus 505 ~d--G-------~l~~~GR~~d~i~~~~G 524 (620)
+. | .+..++|.++..++ .|
T Consensus 340 ~~~~g~~~d~~~~v~~~~~~~~~~~i-~g 367 (369)
T 3hgu_A 340 PGVSGFAGDRLADIEPLKISEGRKVI-EG 367 (369)
T ss_dssp CCSTTCSSCEEEEEEECC-----------
T ss_pred cCCCCCcCcccccceeccccCCCcee-ee
Confidence 33 2 25567777777776 35
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.87 E-value=4.9e-08 Score=103.79 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=82.9
Q ss_pred EEEEEeecCCCCHHHHHHHHHhc-CCeeE-eecCCCCCCCceeeccCCCccccCcccc-CccC-eeEEEeecCCCC-C--
Q 007047 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEMG-Y-- 457 (620)
Q Consensus 385 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~~~~~~~-~-- 457 (620)
+..++.||- ..-...++..+ +.+++ ..|++||+- ......... .+...+. .+|+ +-++.++.++.. +
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~-~~~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLC-KPEDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTS-CGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce--eeeccCCCC-CcccCceeecCCcEEEEEEeccccCCCcE
Confidence 666677773 22233444433 67777 999999963 222221111 1022222 2233 334566533221 1
Q ss_pred ---CCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc----CCcEEEeecccCeEEcCCceeeccH
Q 007047 458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE 530 (620)
Q Consensus 458 ---~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~----dG~l~~~GR~~d~i~~~~G~~v~p~ 530 (620)
..+..|+.+||+|++.. |.|+ |++||+.+++. ..++.|.||.+|+|++ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 11236788999998753 4332 89999999975 3579999999999997 79999999
Q ss_pred HHHHHHhcC
Q 007047 531 YLENVYCVA 539 (620)
Q Consensus 531 ~iE~~l~~~ 539 (620)
+||+++.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999743
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.82 E-value=6.9e-08 Score=102.81 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred EEEEEeecCCCCHHHHHHHHHhc-CCeeE-eecCCCCCCCceeeccCCCccccCcccc-CccC-eeEEEeecCCC-----
Q 007047 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEM----- 455 (620)
Q Consensus 385 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~~~~~~----- 455 (620)
+..++.||- ..-...++..+ +.+++ ..|++||+- +.....+.. .++..+. .+|+ .-++.++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCC--CcccCceeecCCcEEEEEEeccccccccc
Confidence 556666663 22224444433 57777 999999963 222221111 1112221 2233 33455653332
Q ss_pred -CC-------CCCCCCCCceEEEecCCcccccCCChhhhhccccCCcccccceEEEcc----CCcEEEeecccCeEEcCC
Q 007047 456 -GY-------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ 523 (620)
Q Consensus 456 -~~-------~~~~~g~~Gei~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~----dG~l~~~GR~~d~i~~~~ 523 (620)
.. ..+..|+.+||+|+.. .|.|+ |++||+++++. ...+.|.||.+|+|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 11 1234678899999764 35553 89999999973 4689999999999997 7
Q ss_pred ceeeccHHHHHHHh
Q 007047 524 GEYVALEYLENVYC 537 (620)
Q Consensus 524 G~~v~p~~iE~~l~ 537 (620)
|+++++.+||+++.
T Consensus 444 Geki~~~~v~~av~ 457 (609)
T 4b2g_A 444 SDKTDEAELQKAVD 457 (609)
T ss_dssp SCCBCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH
Confidence 99999999999996
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.60 E-value=1.4e-07 Score=100.12 Aligned_cols=130 Identities=21% Similarity=0.166 Sum_probs=79.2
Q ss_pred HHHHHhc-CCeeE-eecCCCCCCCceeeccCCCccccCcccc-CccC-eeEEEeecCCCCC--------CCCCCCCCceE
Q 007047 401 EFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEMGY--------SPLDDPPCGEV 468 (620)
Q Consensus 401 ~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~i~i~~~~~~~~--------~~~~~g~~Gei 468 (620)
..++..+ +.+++ ..|++||+- +.....+.. .++..+. .+|+ .-++.++.++... ..+..|+.+||
T Consensus 320 ~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~Yel 396 (581)
T 4epl_A 320 PKLRHYAGDLPLVSHDYGSSEGW-IAANVTPRL--SPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEV 396 (581)
T ss_dssp HHHHHHHTTSCEEECCEEETTEE-EEECCCTTS--CTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEE
T ss_pred HHHHHHcCCCccccCceecccee-eeeecCCCC--CccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEE
Confidence 3444444 57777 999999963 222221111 1122222 2333 2344454222111 12345788999
Q ss_pred EEecCCcccccCCChhhhhccccCCcccccceEEEccC----CcEEEeecccCeEEcCCceeeccHHHHHHHhc------
Q 007047 469 CVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKISQGEYVALEYLENVYCV------ 538 (620)
Q Consensus 469 ~v~g~~v~~gy~~~~~~t~~~~~dgw~~TGDl~~~~~d----G~l~~~GR~~d~i~~~~G~~v~p~~iE~~l~~------ 538 (620)
+|++.. |.|+ |++||+.+++.- ..+.|.||.++++++ .|+++++.+||+++.+
T Consensus 397 viTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~al~~a~~~l~ 459 (581)
T 4epl_A 397 VITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NIDKNTERDLQLSVESAAKRLS 459 (581)
T ss_dssp EEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHHHHHHHHHHHHHHH
T ss_pred EEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-eeeECCHHHHHHHHHHHHHhhc
Confidence 998753 4332 899999999642 579999999999998 6999999999999964
Q ss_pred Cc--CcceEEEEec
Q 007047 539 AP--IIEDIWVYGD 550 (620)
Q Consensus 539 ~p--~V~~~~V~~~ 550 (620)
.. .|.|-.++.+
T Consensus 460 ~~~~~l~eft~~~d 473 (581)
T 4epl_A 460 EEKIEVIDFSSYID 473 (581)
T ss_dssp TTTCCEEEEEEEEE
T ss_pred ccCCeEEEEEEecC
Confidence 22 3555555553
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.54 E-value=7.1e-08 Score=79.89 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=43.3
Q ss_pred ecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCCC---ceEEEEEEcCh
Q 007047 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE 564 (620)
Q Consensus 513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~vv~~~ 564 (620)
.|.|||||+ +|.||+|.+||++|.+||+|.+++|++.+++ +.+.++|+..+
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~ 54 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQ 54 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECT
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEee
Confidence 489999998 7999999999999999999999998875543 47778887653
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.49 E-value=1.2e-07 Score=78.46 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=41.9
Q ss_pred ecccCeEEcCCceeeccHHHHHHHhcCcCcceEEEEecCC---CceEEEEEEc
Q 007047 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVP 562 (620)
Q Consensus 513 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~vv~ 562 (620)
||.||+|++ +|.|++|.+||++|.+||+|.++++++.++ .+.++++|++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~ 52 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL 52 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE
Confidence 899999998 799999999999999999999887765332 3578888887
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.34 E-value=1.5 Score=45.16 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HhHHHHHHHHHhCCCEEEe
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 130 (620)
.++.++.+... -|.+|.. ..+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34666665541 3445543 4679999988888888888888999999999988853 3445567888999999987
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc-----cccCccEEEEecCC
Q 007047 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (620)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~ 182 (620)
++.. +.+.+...+++.++.+++..+.....+...... ....++.+++.+..
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 7654 778888999999999999998877665443221 12466677666543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.92 E-value=2.6 Score=43.28 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=89.8
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HhHHHHHHHHHhCCCEEEe
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 130 (620)
.++.++.+... -|.+|.. ..+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34566655441 3555543 4679999988888888888888999999999988863 3445567888999999888
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc-----cccCccEEEEecCC
Q 007047 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (620)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~ 182 (620)
++.. +.+.+...+++.++.+++..+.....+...... ....++.++..+..
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 7654 778888999999999999988876655443211 12466777666543
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.54 E-value=1.5 Score=44.99 Aligned_cols=123 Identities=8% Similarity=-0.046 Sum_probs=90.0
Q ss_pred CCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HhHHHHHHHHHhCCCEEEecC
Q 007047 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (620)
Q Consensus 57 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpi~ 132 (620)
+.+|++... -|.+|.. ..+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 556666551 3444443 4689999998888888888888999999999888743 444557788899999988876
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHhcccccc-----cccCccEEEEecCC
Q 007047 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (620)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~ 182 (620)
.. ..+.+...+++.++.+++..+.....+...... ....++.++..+..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 678888899999999999998877665443221 13467777766544
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=83.86 E-value=13 Score=38.68 Aligned_cols=121 Identities=8% Similarity=0.029 Sum_probs=85.5
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCEEEec
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpi 131 (620)
.|+.+|++... -|.+|.. ..+|.+.+...+..... ..++.++|++...+|-.-.+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46788877662 3444433 56788888776665443 45889999998888875433 34467888899998877
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecC
Q 007047 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (620)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~ 181 (620)
+ ..+.+.+...+++.++.+++..+.....+..........++.++..+.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 467888999999999999999998877665544333335666665544
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=83.76 E-value=5.5 Score=39.67 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=79.9
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH--hHHHHHHHHHhCCCEEEe
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP 130 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vp 130 (620)
.++.++.+... -|.+|.. ..+|.+.+...+..++..+...|+.++|++..+++-+. --+...++++..|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 35666666552 3555544 45688888888777767777789999999999988632 234455566889996655
Q ss_pred cCCCCChh-----------------------HHHHHHhhcCccEEEEcchhHHHhccccc---ccccCccEEEEecC
Q 007047 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (620)
Q Consensus 131 i~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~ 181 (620)
.+ .++. .+...+++.++.+++..+.....+.+... .....++.++..+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe 241 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGT 241 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESS
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCc
Confidence 43 2333 66668899999999999888776654421 12244566665543
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=76.78 E-value=37 Score=35.56 Aligned_cols=122 Identities=7% Similarity=-0.059 Sum_probs=84.2
Q ss_pred CCCCceeEeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH--HH-HHHHHHhCCCEEE
Q 007047 55 YPGNRMLGWRPFVDGKFGP--YVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~v~v 129 (620)
.|+.+|++... -|.+|. -..+|.+.+...+..... ..++.++|++...+|-+-.+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 56778877662 244443 257899888776655443 34788999998888865433 22 4788899999988
Q ss_pred ecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccc---cccccCccEEEEecCC
Q 007047 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (620)
Q Consensus 130 pi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (620)
..+ ....+.+...+++.++.+++..+.....+.... ....+.++.+++.+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 765 467788889999999999999887766554322 1234567777665543
No 48
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=74.13 E-value=15 Score=38.97 Aligned_cols=122 Identities=10% Similarity=0.005 Sum_probs=86.1
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHh-HHHHHHHHHhCCCEEEec
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpi 131 (620)
.|+.+|++... -|.+|.. ..+|.+.+...... ....++.++|++...++-+.. ....+++++..|+.++.+
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46778877662 2334332 57888877533221 223478999999988887543 455678889999988877
Q ss_pred CC-CCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCC
Q 007047 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (620)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 182 (620)
+. ...+..+...+++.++.++.........+..........++.++..+..
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 54 4567788899999999999999888777766555556678877776654
No 49
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=73.50 E-value=24 Score=37.23 Aligned_cols=121 Identities=12% Similarity=-0.002 Sum_probs=82.4
Q ss_pred CCceeEeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH--HHHHHHHHhCCCEEEecC
Q 007047 57 GNRMLGWRPFVDGKFGP--YVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 132 (620)
Q Consensus 57 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpi~ 132 (620)
+.+|++... -|.+|. -..+|.+.+...+......+...++.++|++...+|-.-.+ ...+++++ .|+..+.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 777777652 234443 25789998877766554443335788999998888765443 23456777 999988775
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHhccccc---ccccCccEEEEecC
Q 007047 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (620)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~ 181 (620)
....+.+...+++.++.+++..+.....+..... .....++.++..+.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 4678889999999999999999887766644321 12345666666544
No 50
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=71.82 E-value=23 Score=38.08 Aligned_cols=122 Identities=13% Similarity=0.035 Sum_probs=86.6
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCEEEec
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpi 131 (620)
.|+.+|++... -|.+|.. ..+|.+.+...+. .....++.++|++...++-+.+. +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46778877662 3444543 4678877654332 22345789999999998877654 44578889999988776
Q ss_pred C-CCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCC
Q 007047 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (620)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 182 (620)
+ ....++.+...+++.++..++........+..........++.+++-+..
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 34577889999999999999999887776655444555678888777654
No 51
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=71.68 E-value=41 Score=35.32 Aligned_cols=122 Identities=11% Similarity=-0.026 Sum_probs=82.7
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH--HH-HHHHHHhCCCEEE
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~v~v 129 (620)
.++.+|++... -|.+|.. ..+|.+.+...+...+. ..++.++|++...+|....+ .. .+++++..|+..+
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35777877662 2444432 56899888777666544 34889999999888755433 22 4788899999988
Q ss_pred ecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccc---cccccCccEEEEecCC
Q 007047 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (620)
Q Consensus 130 pi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (620)
..+. ..+..+...+++.++.+++..+.....+.... ......++.+++.+..
T Consensus 264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 264 MAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred ECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 7754 56778888999999999999887765554322 2233566777665543
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=70.86 E-value=25 Score=36.55 Aligned_cols=123 Identities=10% Similarity=-0.035 Sum_probs=82.5
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCEEEec
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpi 131 (620)
.++.+|++... -|.+|.. ..+|++.+...+.... ...++.++|++...+|-+..+ +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 45677777652 3444433 4678888876655443 345889999999988876443 45678889999998887
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcchhHHHhccccc---ccccCccEEEEecCC
Q 007047 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (620)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~ 182 (620)
+.. ..+..+...+++.++.+++..+.....+..... ...+.++.++..+..
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 653 456788888999999999999887766543322 223456666665543
No 53
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=70.82 E-value=40 Score=35.08 Aligned_cols=120 Identities=8% Similarity=-0.068 Sum_probs=79.2
Q ss_pred CCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHHH--HHHHHHhCCCEEEec
Q 007047 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (620)
Q Consensus 56 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~v~vpi 131 (620)
|+.+|++... -|.+|.. ..+|.+.+...+..++.. .++.++|++...+|-.-.+-. .+++++ .|+..+..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 5677777652 3444433 468888887776665444 488999999988887654432 345555 88888777
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcchhHHHhcccc---cccccCccEEEEecCC
Q 007047 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (620)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (620)
+......+...+++.++.+++..+.....+.... ....+.++.++..+..
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 4567888889999999999999888766554321 1223456666665543
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=69.40 E-value=39 Score=35.03 Aligned_cols=122 Identities=9% Similarity=-0.110 Sum_probs=83.4
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCEEEec
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpi 131 (620)
.++.+|++... -|.+|.. ..+|.+.+...+..++ ...++.++|++...+|-+..+ +..+++++..|+..+.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 45677777652 3445543 4678888876665544 345789999999988876544 44578889999998877
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcchhHHHhcccc---cccccCccEEEEecC
Q 007047 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (620)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~ 181 (620)
+.. ..+..+...+++.++.+++..+.....+.... ....+.++.++..+.
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 543 45677888899999999999988776654332 122345566665544
No 55
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=69.03 E-value=44 Score=35.34 Aligned_cols=123 Identities=11% Similarity=-0.055 Sum_probs=81.5
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH--HHHHHHHhCCCEEEe
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 130 (620)
.|+.+|++... -|.+|.. ..+|.+ +....... .....++.++|++...++.+..+- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 45777777662 3444433 467887 43311111 124458899999988888765443 356788888988877
Q ss_pred cCC-CCChhHHHHHHhhcCccEEEEcchhHHHhccccc--ccccCccEEEEecCC
Q 007047 131 LYD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 182 (620)
Q Consensus 131 i~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~vi~~~~~ 182 (620)
... ...+..+...+++.++.+++..+.....+..... .....++.++..+..
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 653 6678889999999999999999888776654321 123566777766544
No 56
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=68.65 E-value=28 Score=34.31 Aligned_cols=129 Identities=19% Similarity=0.124 Sum_probs=80.6
Q ss_pred ccHHHHHHHHHHhCCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHH
Q 007047 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAM 118 (620)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~ 118 (620)
.+..+.+.++ +.|.+|++... -|.+|.. ..+|++.+...+..++. ..++.++|++...+|-.-.+ +..+
T Consensus 25 ~~~~~~~~~w---~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~ 96 (358)
T 4gs5_A 25 AQAYDFMEKW---LGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMML 96 (358)
T ss_dssp HHHHHHHHHH---HHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHH
T ss_pred cchhhHhhcc---CCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHH
Confidence 3344444444 44677777652 3455543 57899988776655544 45889999999888866432 4455
Q ss_pred HHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhccccc--ccccCccEEEEecC
Q 007047 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTS 181 (620)
Q Consensus 119 lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~vi~~~~ 181 (620)
+..+..|+..+..++.... ...+++.++..+...+.....+.+... .....++.+++-+.
T Consensus 97 ~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 97 VRGMELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp HHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred HHHHHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEccc
Confidence 6667777777766654332 345788899999998877665543222 23345666665544
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=68.50 E-value=24 Score=36.66 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=82.0
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEcCCcHhHH--HHHHHHHhCCCEE
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGA--EPGCRVGIYGANCPQWV--EAMEACNALSLIC 128 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv--~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~ 128 (620)
.|+.+|++... -|.+|.. ..+|.+.+...+..++. ..++ .++|++...+|-.-.+- ..+++++..|+..
T Consensus 151 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFYT--SGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEEC--CC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 56778887662 2444433 46788888766555433 3467 78899888887654432 4578889999998
Q ss_pred EecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccc-----cccccCccEEEEecCC
Q 007047 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-----CRSAQRLRVMVCFTSL 182 (620)
Q Consensus 129 vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~vi~~~~~ 182 (620)
+..+. ..+..+...+++.++.+++..+.....+.... ......++.++..+..
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~ 283 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT 283 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTT
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCc
Confidence 88754 67788888999999999999988776664432 1123566766665543
No 58
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=67.17 E-value=32 Score=36.22 Aligned_cols=124 Identities=8% Similarity=-0.058 Sum_probs=81.9
Q ss_pred CCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCEEEecC
Q 007047 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (620)
Q Consensus 56 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpi~ 132 (620)
++.+|++... -|.+|.. ..+|.+.+...+......+...++.++|++...+|-.-.+ +...++++..|+..+.++
T Consensus 189 ~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 266 (550)
T 3rix_A 189 DKTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY 266 (550)
T ss_dssp TTSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 3566776652 2444432 5678888776655544443345788999998888866433 445677888999988774
Q ss_pred CCCChhHHHHHHhhcCccEEEEcchhHHHhccccc---ccccCccEEEEecCC
Q 007047 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (620)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~ 182 (620)
...++.+...+++.++.+++..+.....+..... ...+.++.++..+..
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 267 -RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp -SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 4678888899999999999999887766544322 223566766665543
No 59
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=66.87 E-value=58 Score=34.75 Aligned_cols=121 Identities=10% Similarity=-0.036 Sum_probs=82.5
Q ss_pred CCCceeEeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH--hHHH-HHHHHHhCCCEEEe
Q 007047 56 PGNRMLGWRPFVDGKFGP--YVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVE-AMEACNALSLICVP 130 (620)
Q Consensus 56 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~-~~lA~~~~G~v~vp 130 (620)
|+.+|++... -|.+|. -..+|.+.+...+...... .++.++|++...++... +... .+++++..|+..+.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 5777777662 244443 3578998887766655443 47889999998888543 3332 47888888998887
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcchhHHHhccccc-----ccccCccEEEEecCC
Q 007047 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (620)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~vi~~~~~ 182 (620)
.+. .....+...+++.++.++.........+..... .....++.+++.+..
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 654 467778888999999999998877665543221 134567777766554
No 60
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=66.53 E-value=49 Score=34.69 Aligned_cols=107 Identities=9% Similarity=-0.050 Sum_probs=77.9
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++....+..+ -..-.+|+..+...+..+...+.. .++.++|++...++-..- -....+.++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 4677787765322111 123568999998888887776633 378899999999887632 234567788999998888
Q ss_pred cC--ChHHHHHHHhhcCCcEEEechHHHHHHHH
Q 007047 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (620)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (620)
+. ..+.+...++..++.+++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 75 78999999999999999998877666543
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=63.54 E-value=40 Score=36.40 Aligned_cols=123 Identities=10% Similarity=0.022 Sum_probs=82.6
Q ss_pred CCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH--HHHHHHHhCCCEEEec
Q 007047 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (620)
Q Consensus 56 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vpi 131 (620)
++.+|++... -|.+|.. ..+|.+.+...+.... -...++.++|++....+-+...- ..+++.+..|+..+..
T Consensus 255 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILYT--SGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEEE--CCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEec--cCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 5677777652 3455543 3567777654432211 12357899999988877765443 4568899999999887
Q ss_pred CCC---CChhHHHHHHhhcCccEEEEcchhHHHhccccc-----ccccCccEEEEecCC
Q 007047 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (620)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~vi~~~~~ 182 (620)
+.. ..+..+..++++.++.++++.+.....+..... ...+.++.+++.+..
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 642 356788899999999999999888776654332 123567777766554
No 62
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=63.34 E-value=39 Score=35.38 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=76.4
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++... +| -.+|+..+...+..+...+.. .++.++|++...++-..- .....+.++..|+..+.+
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEecc
Confidence 57778876432 22 468999999888887776633 378899999998887632 234567778899998888
Q ss_pred cC--ChHHHHHHHhhcCCcEEEechHHHHHHHH
Q 007047 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (620)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (620)
.. ..+.+...++..++.+++..+.....+.+
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 75 78999999999999999998877666544
No 63
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=62.39 E-value=35 Score=35.36 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=75.6
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++. .+-.+|+..+...+..+...+.. .++.++|++...++-..- -....+.++..|+..+.+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLR--DGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEec
Confidence 467778764 12579999999998888776643 378899999998887632 234567778899998888
Q ss_pred cC--ChHHHHHHHhhcCCcEEEechHHHHHHH
Q 007047 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (620)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (620)
+. +.+.+...++..++.+++..+.....+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 76 7889999999999999999887766543
No 64
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=62.02 E-value=51 Score=34.82 Aligned_cols=123 Identities=3% Similarity=-0.181 Sum_probs=83.1
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH--HHHHHHHhCCCEEEe
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 130 (620)
.|+.+|++... -|.+|.. ..+|.+.+...+..... ..++.++|++...+|-.-.+- ..+++++..|+..+.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46778887662 3444432 57899988877666544 458899999999988776543 337888999999888
Q ss_pred cCCCC---ChhHHHHHHhhcCccEEEEcchhHHHhcccc------cccccCccEEEEecCC
Q 007047 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPD------CRSAQRLRVMVCFTSL 182 (620)
Q Consensus 131 i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~vi~~~~~ 182 (620)
..+.. .+..+...+++.++.++.........+.... ...+..++.++..+..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76532 4667778889999999888776555443321 1123456666665543
No 65
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=60.23 E-value=64 Score=33.74 Aligned_cols=101 Identities=10% Similarity=-0.146 Sum_probs=74.8
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++....+ ....+|+..+...+..+...+.. .++.++|++...++-.. -.....+.++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEec
Confidence 4566776543211 24578999998888877776633 37889999999888663 2234567778899998888
Q ss_pred cC--ChHHHHHHHhhcCCcEEEechHHHHHH
Q 007047 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (620)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (620)
.. ..+.+...++..++.+++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 76 788999999999999999988766544
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=58.93 E-value=59 Score=35.14 Aligned_cols=123 Identities=10% Similarity=-0.076 Sum_probs=80.8
Q ss_pred CCCceeEeeeccCCCCCCce--EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH--HHHHHHHhCCCEEEec
Q 007047 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (620)
Q Consensus 56 pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vpi 131 (620)
++.+|++... -|.+|..+ .+|.+.+...+... .-...++.++|++....+-+...- ..+++.+..|+..+..
T Consensus 261 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 261 SEDPLFLLYT--SGSTGAPKGVQHSTAGYLLGALLT--MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp TTSCCEEEEE--CCSSSSCEEEEECSHHHHHHHHHH--HHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred CCCceEEEec--cCCCCCCceEEEchhHHHHHHHHH--HHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 5677777652 34555443 46666654433221 112458899999888777664432 4567889999998887
Q ss_pred CCC---CChhHHHHHHhhcCccEEEEcchhHHHhccccc-----ccccCccEEEEecCC
Q 007047 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (620)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~vi~~~~~ 182 (620)
+.. ...+.+..++++.++.++++.+.....+..... ..++.++.+++.+..
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 395 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP 395 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCC
Confidence 642 356788899999999999999988777654432 123566776665543
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=57.41 E-value=47 Score=35.20 Aligned_cols=123 Identities=8% Similarity=-0.116 Sum_probs=79.7
Q ss_pred CCCCceeEeeeccCCCCCCce--EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH--HHHHHHHhCCCEEEe
Q 007047 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 130 (620)
.++.+|++... -|.+|..+ .+|...+.... .......++.++|++....+.+.... ..+++.+..|+.+++
T Consensus 223 ~~~d~a~i~~T--SGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYFS--SGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEEe--CCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 45677777652 35555544 34544333222 22222358899999888877765433 347889999999887
Q ss_pred cC-CCCChhHHHHHHhhcCccEEEEcchhHHHhccccc--ccccCccEEEEecCC
Q 007047 131 LY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 182 (620)
Q Consensus 131 i~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~vi~~~~~ 182 (620)
.+ ....++.+...+++.++.+++..+.....+..... ...+.++.++..+..
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~ 352 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEP 352 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSC
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCC
Confidence 75 56678888999999999999998887766654321 123456766665543
No 68
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=54.30 E-value=89 Score=31.79 Aligned_cols=107 Identities=12% Similarity=0.000 Sum_probs=76.9
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++.........-....+|+..+...+..+...+... +. ++|++...++-..- -....+.++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEee
Confidence 577888776543211111346799999999998888777433 44 88999888876632 234567778999998877
Q ss_pred cC-----ChHHHHHHHhhcCCcEEEechHHHHHHHH
Q 007047 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (620)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (620)
.. ..+.+...++..++.+++..+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 46789999999999999999887666543
No 69
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=53.56 E-value=27 Score=25.84 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHH
Q 007047 530 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYS 573 (620)
Q Consensus 530 ~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~ 573 (620)
.++++.|.+.|.|.+|..+..+ .+.++-+.+.+.+++.++...
T Consensus 16 ~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~l~~~i~~ 58 (83)
T 2cvi_A 16 REVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKDLDQFITE 58 (83)
T ss_dssp HHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHHHHHHHHH
Confidence 6899999999999999887654 567777778888888888753
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=52.44 E-value=52 Score=34.03 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=67.3
Q ss_pred eeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcE
Q 007047 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (620)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (620)
-.+|+..+...+..+...+.. .++.++|++...++-.. -.....+.++..|+..+.++. +.+.+...++..++.+
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVA--RGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 358999999888887776633 27889999999888763 223456778899999888876 7899999999999999
Q ss_pred EEechHHHHHH
Q 007047 316 LAGVPRVFEKI 326 (620)
Q Consensus 316 ~~~~P~~~~~l 326 (620)
++..+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99988765443
No 71
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=51.98 E-value=55 Score=34.06 Aligned_cols=98 Identities=7% Similarity=-0.150 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++.. +..+|+..+...+..+...+.. .++.++|++...++-..- .....+.++..|+..+..
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEec
Confidence 4666776532 1358999999888887776633 378899999988887642 234567778899998887
Q ss_pred cC--ChHHHHHHHhhcCCcEEEechHHHHHHH
Q 007047 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (620)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (620)
+. +.+.+...++..++.+++..+.....+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 75 7899999999999999999887765543
No 72
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=51.35 E-value=83 Score=33.07 Aligned_cols=95 Identities=8% Similarity=-0.003 Sum_probs=71.2
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++. . .-.+|+..+...+..+...+.. .++.++|++...++-.. -.....+.++..|+..+.+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEe
Confidence 467777653 1 2368999998888877766533 37889999998888663 2234567778899998888
Q ss_pred cC--ChHHHHHHHhhcCCcEEEechHHHH
Q 007047 298 HG--DLNALRDDLMELKPTLLAGVPRVFE 324 (620)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~ 324 (620)
.. ..+.+...++..++.+++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 76 7889999999999999998876544
No 73
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=48.73 E-value=31 Score=25.33 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHHC
Q 007047 530 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN 574 (620)
Q Consensus 530 ~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~ 574 (620)
.++++.|.++|.|.+|..+..+ .+.++-+.+.+.+++.++....
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~~~~~~~ 59 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMDKLKDFVTNT 59 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHHHHHHHHHHH
Confidence 6899999999999999877654 5677777778888888877543
No 74
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=47.74 E-value=1.2e+02 Score=31.34 Aligned_cols=103 Identities=10% Similarity=-0.088 Sum_probs=72.0
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHh--HHHHHHHHHhCCCEEEe
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 130 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 130 (620)
.|+.+|++... -|.+|.. ..+|.+.+...+..++..+ ++.++|++...++..-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46777777662 3444443 5689998888777665544 78899998887775432 23457888999999887
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcchhHHHhcc
Q 007047 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (620)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (620)
.. ....+.+...+ ..++..++..+.....+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 74 45666666666 6789999988877665543
No 75
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=47.68 E-value=50 Score=39.10 Aligned_cols=123 Identities=9% Similarity=-0.050 Sum_probs=85.3
Q ss_pred CCCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCEEEec
Q 007047 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (620)
Q Consensus 55 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpi 131 (620)
.|+.+|++... -|.+|.. ..+|.+.+... .......++.++|++....+-+.+. +.-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 47778887662 3444443 46788777532 1122334889999999888877665 34578888999998887
Q ss_pred CC--CCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCCc
Q 007047 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (620)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 183 (620)
++ ..++..+...+++.++.+++..+.....+..........++.+++.++..
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 65 35678899999999999999988877666443333345677777766543
No 76
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=43.99 E-value=85 Score=30.48 Aligned_cols=65 Identities=8% Similarity=-0.018 Sum_probs=47.2
Q ss_pred HHHCC-CCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcch
Q 007047 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (620)
Q Consensus 93 L~~~g-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (620)
+.+.| +++|+.|.+....+-.-....++|.+.|.-++.+-|...+..-...++..++.+++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 488988655556566667778888888988776656555555667789999999999764
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=43.60 E-value=1.4e+02 Score=31.27 Aligned_cols=124 Identities=6% Similarity=-0.157 Sum_probs=81.1
Q ss_pred CCCceeEeeeccCCCCCCc--eEeeHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEEcCCcHhH-HHHHHHHHhCCCE
Q 007047 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALR-----ASGAEPGCRVGIYGANCPQW-VEAMEACNALSLI 127 (620)
Q Consensus 56 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~-----~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v 127 (620)
++.+|++... -|.+|.. ..+|.+.+...+..++..+. ...+..++++....+...+. +..++.++..|+.
T Consensus 174 ~~~~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 251 (562)
T 3ite_A 174 ENLDAYLLYT--SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLC 251 (562)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEEC--CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccE
Confidence 3445665542 3444543 46799999888888777664 23577788888777766554 4456778888988
Q ss_pred EEecCCCCChhHHHHHHhhcCccEEEEcchhHHHhcccccccccCccEEEEecCC
Q 007047 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (620)
Q Consensus 128 ~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 182 (620)
.+........+.+...+++.++.+++..+.....+... ....+.++.+++.+..
T Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 252 AVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-PEDAPHLVYLGVGGEK 305 (562)
T ss_dssp EEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-GGGSTTCCEEEEESSC
T ss_pred EEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-ccccCceEEEEEecCC
Confidence 87665443346677889999999999988776654322 2344567777665543
No 78
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=41.25 E-value=50 Score=24.87 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=35.2
Q ss_pred cHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHH
Q 007047 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYS 573 (620)
Q Consensus 529 p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~ 573 (620)
..++++.|.++|+|.+|..+..+ .+.++-+.+.+.+++.++..+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~D~ll~v~~~d~~~l~~~l~~ 58 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-YDLVALVRLKDVEELDDVVTQ 58 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-SSEEEEEEESSGGGHHHHCCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-CCEEEEEEECCHHHHHHHHHH
Confidence 46889999999999999877654 567777778888888887643
No 79
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=38.55 E-value=1.3e+02 Score=27.08 Aligned_cols=53 Identities=6% Similarity=-0.157 Sum_probs=36.6
Q ss_pred CcEEEEecChh-HHHHHHHH-HHHhhcCcEEEEecC--ChHHHHHHHhhcCCcEEEe
Q 007047 266 DDVYLSFLPLA-HILDRVIE-EYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAG 318 (620)
Q Consensus 266 ~d~~~~~~pl~-h~~g~~~~-~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~ 318 (620)
+.+++...+-. |..|...+ ...-..|..++.... +++.+.+.+.+++++++..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34444444433 77777654 444566777766543 8999999999999998766
No 80
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=37.90 E-value=1.3e+02 Score=29.38 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=53.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcch
Q 007047 87 LQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (620)
Q Consensus 87 ~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (620)
..+.....+--+++|.+..+....+-.-....++|.++|.-+..+-|...+..-...++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 34444444434678877667777777788888999999988877767666667778899999999998653
No 81
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=37.84 E-value=1.1e+02 Score=34.75 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=74.8
Q ss_pred CCCCeEEEEecCCCCCCcceeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 007047 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (620)
Q Consensus 218 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~ 297 (620)
.|+.+|++... +| -.+|+..+...+..+...+.. .++.++|++...++-.. --....+.++..|+..+.+
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 57888876432 22 468999998888887776633 37889999999988763 2234567788999998888
Q ss_pred cC--ChHHHHHHHhhcCCcEEEechHHHHHH
Q 007047 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (620)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (620)
+. .++.+...++..++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 75 789999999999999999887665444
No 82
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=37.72 E-value=1.3e+02 Score=29.10 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=52.7
Q ss_pred eeHHHHHHHHHHHHH---HHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEE
Q 007047 77 KTYKEVYEEVLQIVS---ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (620)
Q Consensus 77 ~Ty~el~~~~~~lA~---~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi 153 (620)
+++.+.......... .+...++++||+|+|....+.-.++++++....|+.++.++.. ++. ..+++..++..+|
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 677776554444332 3445689999999999887777788888877778777666543 333 3566778888776
Q ss_pred Ec
Q 007047 154 VQ 155 (620)
Q Consensus 154 ~~ 155 (620)
-.
T Consensus 214 ~~ 215 (348)
T 4eez_A 214 NS 215 (348)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 83
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=36.81 E-value=1.2e+02 Score=31.16 Aligned_cols=81 Identities=11% Similarity=-0.010 Sum_probs=61.7
Q ss_pred eeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHHhhcCCcE
Q 007047 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (620)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (620)
-.+|+..+...+..+...+.. .++.++|++...++-.. --....+.++..|+..+.+.. ..+.+...++..++.+
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~--~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDS--LALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 358999998888887776633 36788998888877653 223456777889999888765 7899999999999999
Q ss_pred EEechH
Q 007047 316 LAGVPR 321 (620)
Q Consensus 316 ~~~~P~ 321 (620)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 887653
No 84
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=28.33 E-value=2.3e+02 Score=26.86 Aligned_cols=74 Identities=11% Similarity=-0.040 Sum_probs=48.1
Q ss_pred eeHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEc-CCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEE
Q 007047 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (620)
Q Consensus 77 ~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~i~~-~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~v 152 (620)
+++.+........ -+.|...++++|++|+|.. .-..-.+++.+|- ..|+.++.+. +.++ ..++++.++..+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 6777766543332 2334556899999999996 5556666666665 5688766553 3444 456777888876
Q ss_pred EEc
Q 007047 153 FVQ 155 (620)
Q Consensus 153 i~~ 155 (620)
+..
T Consensus 201 i~~ 203 (321)
T 3tqh_A 201 INY 203 (321)
T ss_dssp EET
T ss_pred EeC
Confidence 654
No 85
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=27.48 E-value=1.8e+02 Score=28.12 Aligned_cols=60 Identities=7% Similarity=0.020 Sum_probs=38.8
Q ss_pred CCCCCCEEEEEcCCcH------hHHHHHHH-HHhCCCEEEecCCCC------------ChhHHHHHHhhcCccEEEEcc
Q 007047 97 GAEPGCRVGIYGANCP------QWVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (620)
Q Consensus 97 gv~~gd~V~i~~~n~~------e~~~~~lA-~~~~G~v~vpi~~~~------------~~~~l~~~l~~~~~~~vi~~~ 156 (620)
-+++||+|+|++|.+. +-+-.... +-..|..++.-.... ..++|..++.+-.+++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4799999999999853 22222222 335677766543221 124677788888899999865
No 86
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=27.13 E-value=1.5e+02 Score=28.92 Aligned_cols=78 Identities=13% Similarity=-0.038 Sum_probs=49.0
Q ss_pred eeHHHHHHHH--HHHH-HHHHH-CCCCCCCEEEEEcC-CcHhHHHHHHHHHhCCCEE-EecCCCCChhHHHHHHhhcCcc
Q 007047 77 KTYKEVYEEV--LQIV-SALRA-SGAEPGCRVGIYGA-NCPQWVEAMEACNALSLIC-VPLYDTLGPGAVNFILDHAEID 150 (620)
Q Consensus 77 ~Ty~el~~~~--~~lA-~~L~~-~gv~~gd~V~i~~~-n~~e~~~~~lA~~~~G~v~-vpi~~~~~~~~l~~~l~~~~~~ 150 (620)
+++.+..... -..| +.|.+ .++++|++|+|... ...-.+++.+|-. .|+.. +.++.....++....++..++.
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 6777765432 1122 23444 48999999999997 5566677777654 57744 4444443444455667788998
Q ss_pred EEEEc
Q 007047 151 FVFVQ 155 (620)
Q Consensus 151 ~vi~~ 155 (620)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 87753
No 87
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=26.73 E-value=2.4e+02 Score=29.30 Aligned_cols=88 Identities=9% Similarity=-0.145 Sum_probs=67.0
Q ss_pred eeeeccHHHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--C-------hHHHHHH
Q 007047 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--D-------LNALRDD 307 (620)
Q Consensus 237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~v~~~~--~-------~~~~~~~ 307 (620)
.-.+|+..+...+..+...+.. .++.++|++...++-..- -....+.++..|+..+.+.. . .+.+...
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLS--LNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHH--TCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 3578999999988887776643 378899999999887632 23456778899999888764 2 5788889
Q ss_pred HhhcCCcEEEechHHHHHHH
Q 007047 308 LMELKPTLLAGVPRVFEKIH 327 (620)
Q Consensus 308 i~~~~~t~~~~~P~~~~~l~ 327 (620)
++..++.+++........+.
T Consensus 124 l~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHHCCSEEEECGGGHHHHH
T ss_pred HHhcCCCEEEecHHHHHHHH
Confidence 99999999999887665543
No 88
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=26.57 E-value=1e+02 Score=28.82 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCCCCEEEEEcCCc
Q 007047 87 LQIVSALRASGAEPGCRVGIYGANC 111 (620)
Q Consensus 87 ~~lA~~L~~~gv~~gd~V~i~~~n~ 111 (620)
..|.+.|+++||++||.|.|.+.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567788899999999999998764
No 89
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=25.62 E-value=2e+02 Score=27.87 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=39.7
Q ss_pred CCCCCCEEEEEcCCcHh------HHHHHHHHH-hCCCEEEecCCCC------------ChhHHHHHHhhcCccEEEEcch
Q 007047 97 GAEPGCRVGIYGANCPQ------WVEAMEACN-ALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (620)
Q Consensus 97 gv~~gd~V~i~~~n~~e------~~~~~lA~~-~~G~v~vpi~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 157 (620)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-.... ..++|..++.+-++++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47999999999999842 232223333 4788776532111 1236777788888999999763
No 90
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=25.15 E-value=1.5e+02 Score=24.64 Aligned_cols=45 Identities=4% Similarity=-0.020 Sum_probs=35.8
Q ss_pred cHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHHC
Q 007047 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN 574 (620)
Q Consensus 529 p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~ 574 (620)
..++.+.+.++|.|.+|..+..+ .+.++-+.+.+.+++.++....
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~~ 126 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGH-YSIFIKVMCRSIDALQHVLINK 126 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSS-CSEEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcCeEEEEEEecc-cCEEEEEEECCHHHHHHHHHHH
Confidence 45789999999999999887543 5677777788888888887544
No 91
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.55 E-value=1.6e+02 Score=28.94 Aligned_cols=60 Identities=10% Similarity=-0.060 Sum_probs=38.0
Q ss_pred HHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCC-----CChhHHHHHHhhcC--ccEEEE
Q 007047 92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT-----LGPGAVNFILDHAE--IDFVFV 154 (620)
Q Consensus 92 ~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~-----~~~~~l~~~l~~~~--~~~vi~ 154 (620)
.|...++++||.|.+-.+...-+ .-++...|+.++.++.. ...+.+...+..-+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 34445688999998776655543 34556788887766532 35677777764334 666664
No 92
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=24.52 E-value=1.7e+02 Score=27.78 Aligned_cols=73 Identities=5% Similarity=-0.029 Sum_probs=47.9
Q ss_pred EeeHHHHHHHHHHHHHH---HHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEE
Q 007047 76 WKTYKEVYEEVLQIVSA---LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (620)
Q Consensus 76 ~~Ty~el~~~~~~lA~~---L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~v 152 (620)
.+++.+.......++.. |...++++|++|+|......-.+++.+|- ..|+.++.+. +.+.+ .++++.++..+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhH-HHHHHcCCCEE
Confidence 36888875444433333 33458999999999999556666666665 4588766665 23333 33567888888
Q ss_pred E
Q 007047 153 F 153 (620)
Q Consensus 153 i 153 (620)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 93
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=23.44 E-value=2.1e+02 Score=27.57 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=47.2
Q ss_pred eeHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEE
Q 007047 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (620)
Q Consensus 77 ~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi 153 (620)
+++.+........ -+.|.+.++++|++|+|...-..-.+++.+|- ..|+.++.+... .+.+. .+++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 6777765332221 23455668999999999987556666666665 568876665543 23333 45678888887
No 94
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.27 E-value=1.3e+02 Score=25.37 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=32.6
Q ss_pred cHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHH
Q 007047 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAY 572 (620)
Q Consensus 529 p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~ 572 (620)
..++.+.|.++|.|.+|..+... -+.++-+.+.+.+++.++..
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~-~D~~l~v~~~d~~~l~~~l~ 121 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGD-VDYLLRVVVPDIAAYDAFYK 121 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSS-CSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeeecCCC-CCEEEEEEECCHHHHHHHHH
Confidence 45788999999999999876543 56776677788777776654
No 95
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.26 E-value=2.2e+02 Score=28.02 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=40.1
Q ss_pred CCCCCCEEEEEcCCcH------hHHHHHHHH-HhCCCEEEecCCCC------------ChhHHHHHHhhcCccEEEEcch
Q 007047 97 GAEPGCRVGIYGANCP------QWVEAMEAC-NALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (620)
Q Consensus 97 gv~~gd~V~i~~~n~~------e~~~~~lA~-~~~G~v~vpi~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 157 (620)
-+++||+|+|++|.+. +-+-..... -..|..++.-.... ..++|..++.+-++++|++...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 5899999999999874 223222333 34788776543221 1236777778888999999653
No 96
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=22.75 E-value=2.2e+02 Score=27.54 Aligned_cols=61 Identities=5% Similarity=-0.012 Sum_probs=40.0
Q ss_pred CCCCCCEEEEEcCCcHh------HHHHHHHHH-hCCCEEEecCCCC------------ChhHHHHHHhhcCccEEEEcch
Q 007047 97 GAEPGCRVGIYGANCPQ------WVEAMEACN-ALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (620)
Q Consensus 97 gv~~gd~V~i~~~n~~e------~~~~~lA~~-~~G~v~vpi~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 157 (620)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-.... ..++|..++.+-++++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47999999999998752 232333333 4788776543221 1236777788888999999653
No 97
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=22.18 E-value=1.9e+02 Score=24.20 Aligned_cols=45 Identities=7% Similarity=0.026 Sum_probs=35.2
Q ss_pred cHHHHHHHhcCcCcceEEEEecCCCceEEEEEEcChHHHHHHHHHC
Q 007047 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN 574 (620)
Q Consensus 529 p~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv~~~~~~~~~~~~~ 574 (620)
..++++.+.++|.|.+|..+..+ .+.++-+.+.+.+++.++....
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~~ 129 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTGE-TDYLLQAFFTDMNAFSHFVLDT 129 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESSS-CSEEEEEEESSHHHHHHHHHHT
T ss_pred HHHHHHHHhcChhhhEeeeecCC-CCEEEEEEECCHHHHHHHHHHH
Confidence 46788999999999999876543 5677777778888888887544
No 98
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=22.11 E-value=2.7e+02 Score=26.93 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=49.4
Q ss_pred eeHHHHH---HHHHH---HHHHHHH--CCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcC
Q 007047 77 KTYKEVY---EEVLQ---IVSALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148 (620)
Q Consensus 77 ~Ty~el~---~~~~~---lA~~L~~--~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~ 148 (620)
+++.+.. -.... .-+.|.+ .++++|++|+|......-.+++.+|-...|+.++.++. +++.+ ..+++.+
T Consensus 155 ~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lG 231 (359)
T 1h2b_A 155 ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLG 231 (359)
T ss_dssp CCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTT
T ss_pred CCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhC
Confidence 6777654 22111 2234555 78999999999998667777777777654876555544 34444 3456788
Q ss_pred ccEEEEcc
Q 007047 149 IDFVFVQD 156 (620)
Q Consensus 149 ~~~vi~~~ 156 (620)
+..++...
T Consensus 232 a~~vi~~~ 239 (359)
T 1h2b_A 232 ADHVVDAR 239 (359)
T ss_dssp CSEEEETT
T ss_pred CCEEEecc
Confidence 88877543
No 99
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=21.97 E-value=3.2e+02 Score=27.47 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=46.3
Q ss_pred HHCC-CCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcc
Q 007047 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (620)
Q Consensus 94 ~~~g-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (620)
.+.| +++|....+....+-.-....++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 3555 46775555556667677778888999998877766665556666788999999999975
No 100
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.31 E-value=2.8e+02 Score=26.55 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=49.1
Q ss_pred eeHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEE
Q 007047 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (620)
Q Consensus 77 ~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi 153 (620)
+++.+........ -+.|...++++|++|+|......-.+++.+|- ..|+.++.++. +++.+. .+++.++..++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEEE
Confidence 6777765332221 23455568999999999887666677666666 45887666544 344443 56778888877
Q ss_pred Ecc
Q 007047 154 VQD 156 (620)
Q Consensus 154 ~~~ 156 (620)
...
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 543
No 101
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=21.01 E-value=3.9e+02 Score=25.22 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=42.9
Q ss_pred HHHCC-CCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEEEEcch
Q 007047 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (620)
Q Consensus 93 L~~~g-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (620)
+.+.| +++|+.|.. ...+-.-....++|.+.|.-++.+-|...+..-...++..+++++++...
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 33444 467776644 45555556667777889988776655544455556788999999999863
No 102
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=20.75 E-value=3.2e+02 Score=25.43 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCceeEeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHhHH
Q 007047 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (620)
Q Consensus 46 ~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~ 115 (620)
.++.+..+..|+...+.+. |...-.+-..|..++.+++.+.+..|.+.|+ ...++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 4566667789999888877 6555555567999999999999999998765 3555566666653
No 103
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=20.73 E-value=2.7e+02 Score=26.70 Aligned_cols=78 Identities=8% Similarity=-0.097 Sum_probs=50.9
Q ss_pred eeHHHHHHHHHHH---HHHHHHC--CCCCCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccE
Q 007047 77 KTYKEVYEEVLQI---VSALRAS--GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (620)
Q Consensus 77 ~Ty~el~~~~~~l---A~~L~~~--gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~ 151 (620)
+++.+........ -+.|.+. ++++|++|+|......-.+++.+|-..-|+.++.++.. .+.+ .++++.++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHH-HHHHHcCCCE
Confidence 5666655333322 2334553 78999999999886667778888877656666666542 3443 4567888888
Q ss_pred EEEcch
Q 007047 152 VFVQDK 157 (620)
Q Consensus 152 vi~~~~ 157 (620)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876543
No 104
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=20.32 E-value=2.2e+02 Score=27.54 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=47.6
Q ss_pred eeHHHHHHHHHHH---HHHHHHCCCC-CCCEEEEEcCCcHhHHHHHHHHHhCCCEEEecCCCCChhHHHHHHhhcCccEE
Q 007047 77 KTYKEVYEEVLQI---VSALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (620)
Q Consensus 77 ~Ty~el~~~~~~l---A~~L~~~gv~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpi~~~~~~~~l~~~l~~~~~~~v 152 (620)
+++.+........ -+.|.+.+++ +|++|+|......-.+++.+|-. .|+.++.+... .+.+....+..++..+
T Consensus 153 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 153 MAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDY 229 (357)
T ss_dssp CCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCcee
Confidence 6777654322221 2335566888 99999999876666677776664 57765555443 3445555557788776
Q ss_pred EEcc
Q 007047 153 FVQD 156 (620)
Q Consensus 153 i~~~ 156 (620)
+...
T Consensus 230 i~~~ 233 (357)
T 2cf5_A 230 VIGS 233 (357)
T ss_dssp EETT
T ss_pred eccc
Confidence 6543
No 105
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.12 E-value=1.9e+02 Score=23.87 Aligned_cols=41 Identities=5% Similarity=0.007 Sum_probs=32.0
Q ss_pred HHHHHHHhcCcCcceEEEEecCCCceEEEEEE-cChHHHHHHH
Q 007047 530 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV-PCEEDTKKWA 571 (620)
Q Consensus 530 ~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~vv-~~~~~~~~~~ 571 (620)
.++++.+.++|.|.+|..+..+ .+.++-+.+ .+.+++.++.
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~~d~~~l~~~~ 124 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGVGR-YNIIVRLLLPKDIKDAENLI 124 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEESS-CSEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeEecCC-CCEEEEEEEcCCHHHHHHHH
Confidence 4788999999999999877543 567777777 7778777776
Done!