Query 007048
Match_columns 620
No_of_seqs 238 out of 531
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 4.1E-55 1.4E-59 460.8 21.6 283 136-438 19-323 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 4E-53 1.4E-57 446.7 19.9 267 139-426 69-343 (371)
3 2rno_A Putative DNA-binding pr 99.8 1.9E-21 6.5E-26 168.6 5.2 71 1-72 22-109 (110)
4 1v66_A Protein inhibitor of ac 99.4 3.1E-13 1.1E-17 108.9 3.8 46 1-46 16-64 (65)
5 2rsd_A E3 SUMO-protein ligase 99.3 1E-12 3.5E-17 108.1 3.9 66 75-141 3-68 (68)
6 1wew_A DNA-binding family prot 99.2 1E-11 3.5E-16 104.8 4.4 70 73-142 7-76 (78)
7 3htk_C E3 SUMO-protein ligase 98.7 6.4E-09 2.2E-13 105.9 4.5 77 318-396 170-248 (267)
8 2lv9_A Histone-lysine N-methyl 98.6 2.2E-08 7.4E-13 88.0 5.5 55 79-141 25-79 (98)
9 3o7a_A PHD finger protein 13 v 98.6 2.6E-08 9E-13 77.6 3.1 49 81-137 3-51 (52)
10 3o70_A PHD finger protein 13; 98.6 3.5E-08 1.2E-12 81.2 3.8 53 78-138 15-67 (68)
11 1wee_A PHD finger family prote 98.4 1.2E-07 4.2E-12 78.5 3.9 54 79-139 13-67 (72)
12 1wep_A PHF8; structural genomi 98.4 1.2E-07 4E-12 80.0 2.7 56 79-140 9-65 (79)
13 1wem_A Death associated transc 98.3 4.1E-08 1.4E-12 82.0 -0.7 56 81-138 15-70 (76)
14 1we9_A PHD finger family prote 98.3 2.3E-07 7.8E-12 74.9 3.3 55 79-139 3-59 (64)
15 3kqi_A GRC5, PHD finger protei 98.3 9.4E-08 3.2E-12 79.8 0.6 54 80-139 8-62 (75)
16 1weu_A Inhibitor of growth fam 98.3 8.4E-07 2.9E-11 77.1 5.6 56 76-139 30-86 (91)
17 3c6w_A P28ING5, inhibitor of g 98.0 2E-06 7E-11 68.8 1.9 52 79-138 6-58 (59)
18 2g6q_A Inhibitor of growth pro 98.0 2E-06 6.8E-11 69.5 1.9 53 79-139 8-61 (62)
19 1wen_A Inhibitor of growth fam 97.9 9E-06 3.1E-10 67.4 5.1 53 79-139 13-66 (71)
20 1x4i_A Inhibitor of growth pro 97.9 3.7E-06 1.3E-10 69.5 2.3 52 79-138 3-55 (70)
21 2vnf_A ING 4, P29ING4, inhibit 97.8 5.2E-06 1.8E-10 66.5 1.9 53 79-139 7-60 (60)
22 3kv5_D JMJC domain-containing 97.8 2.9E-06 9.8E-11 93.6 0.3 54 79-138 34-88 (488)
23 2ri7_A Nucleosome-remodeling f 97.7 5.9E-06 2E-10 78.7 -0.3 55 79-139 5-60 (174)
24 2jmi_A Protein YNG1, ING1 homo 97.6 2.3E-05 7.9E-10 67.9 3.1 50 79-136 23-74 (90)
25 2k16_A Transcription initiatio 97.6 2.1E-05 7.1E-10 65.3 2.7 52 80-138 16-68 (75)
26 3kv4_A PHD finger protein 8; e 97.5 7.9E-06 2.7E-10 89.1 -1.2 53 81-139 4-57 (447)
27 2kgg_A Histone demethylase jar 97.5 1.4E-05 4.7E-10 62.1 0.3 48 83-136 4-52 (52)
28 2yu4_A E3 SUMO-protein ligase 97.1 0.00039 1.3E-08 59.8 4.8 70 327-398 5-81 (94)
29 3lqh_A Histone-lysine N-methyl 97.0 9.6E-05 3.3E-09 71.7 -0.1 59 83-144 3-68 (183)
30 2do1_A Nuclear protein HCC-1; 96.9 0.0005 1.7E-08 54.3 3.1 32 1-32 15-46 (55)
31 1zrj_A E1B-55KDA-associated pr 96.8 0.00065 2.2E-08 52.6 3.1 32 1-32 15-46 (50)
32 2rnn_A E3 SUMO-protein ligase 96.8 0.0011 3.6E-08 59.7 4.5 33 1-33 42-74 (114)
33 2kr4_A Ubiquitin conjugation f 96.8 0.00078 2.7E-08 56.9 3.4 66 326-396 11-76 (85)
34 2kvu_A MKL/myocardin-like prot 96.6 0.00087 3E-08 56.0 2.6 32 1-32 31-62 (75)
35 1h1j_S THO1 protein; SAP domai 96.6 0.0014 4.7E-08 51.0 3.4 31 1-31 10-40 (51)
36 2xb1_A Pygopus homolog 2, B-ce 96.6 0.00037 1.3E-08 61.7 0.1 52 86-139 8-62 (105)
37 1wgm_A Ubiquitin conjugation f 96.4 0.0036 1.2E-07 54.4 5.5 66 326-396 19-85 (98)
38 2bay_A PRE-mRNA splicing facto 96.4 0.00093 3.2E-08 53.4 1.6 53 328-384 2-54 (61)
39 3ztg_A E3 ubiquitin-protein li 96.3 0.004 1.4E-07 52.4 5.0 67 329-398 13-81 (92)
40 1t1h_A Gspef-atpub14, armadill 96.2 0.0032 1.1E-07 51.4 3.9 65 329-397 8-72 (78)
41 2kre_A Ubiquitin conjugation f 96.2 0.004 1.4E-07 54.3 4.5 67 326-397 26-92 (100)
42 1jjr_A KU70, thyroid autoantig 96.2 0.0023 8E-08 60.2 3.2 33 1-33 66-98 (151)
43 2vpb_A Hpygo1, pygopus homolog 96.2 0.00054 1.8E-08 55.7 -1.0 51 84-136 11-64 (65)
44 3pur_A Lysine-specific demethy 95.9 0.0024 8.4E-08 70.6 2.3 52 81-138 39-94 (528)
45 2f42_A STIP1 homology and U-bo 95.7 0.0088 3E-07 57.7 4.9 66 327-396 104-169 (179)
46 2ku3_A Bromodomain-containing 95.4 0.0053 1.8E-07 50.7 1.9 51 83-142 18-70 (71)
47 3lrq_A E3 ubiquitin-protein li 95.3 0.01 3.5E-07 51.1 3.6 70 326-399 19-89 (100)
48 2y43_A E3 ubiquitin-protein li 95.3 0.019 6.6E-07 48.9 5.3 67 327-398 20-87 (99)
49 2e6r_A Jumonji/ARID domain-con 95.1 0.0099 3.4E-07 51.3 2.6 52 80-138 14-66 (92)
50 2ckl_B Ubiquitin ligase protei 95.0 0.012 4.1E-07 55.0 3.3 70 325-398 50-121 (165)
51 1f62_A Transcription factor WS 95.0 0.012 4.2E-07 44.9 2.7 45 86-137 5-49 (51)
52 3fl2_A E3 ubiquitin-protein li 94.9 0.022 7.6E-07 50.7 4.5 65 327-396 50-116 (124)
53 2l43_A N-teminal domain from h 94.9 0.01 3.4E-07 50.9 2.1 55 82-145 26-82 (88)
54 1jm7_B BARD1, BRCA1-associated 94.9 0.019 6.7E-07 50.7 4.0 63 329-398 22-85 (117)
55 2c2l_A CHIP, carboxy terminus 94.8 0.018 6E-07 57.2 4.1 64 328-396 207-271 (281)
56 2ckl_A Polycomb group ring fin 94.7 0.038 1.3E-06 47.9 5.5 65 327-396 13-82 (108)
57 2l5u_A Chromodomain-helicase-D 94.6 0.028 9.4E-07 44.8 3.9 52 77-138 6-58 (61)
58 1jm7_A BRCA1, breast cancer ty 94.4 0.025 8.5E-07 49.0 3.4 61 329-392 21-82 (112)
59 1z6u_A NP95-like ring finger p 94.2 0.041 1.4E-06 51.2 4.8 66 327-397 76-143 (150)
60 3hct_A TNF receptor-associated 94.2 0.03 1E-06 49.5 3.6 67 325-396 14-81 (118)
61 2ecw_A Tripartite motif-contai 94.0 0.0098 3.4E-07 48.6 0.0 64 327-391 17-82 (85)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.7 0.007 2.4E-07 53.9 -1.5 42 95-138 1-44 (140)
63 2ecy_A TNF receptor-associated 93.4 0.057 2E-06 42.5 3.6 52 327-383 13-65 (66)
64 2yql_A PHD finger protein 21A; 92.6 0.078 2.7E-06 41.3 3.2 44 83-136 10-54 (56)
65 2ecv_A Tripartite motif-contai 92.5 0.03 1E-06 45.6 0.7 63 326-389 16-80 (85)
66 2djb_A Polycomb group ring fin 92.3 0.081 2.8E-06 42.4 3.0 53 327-384 13-66 (72)
67 4gne_A Histone-lysine N-methyl 92.2 0.1 3.5E-06 46.3 3.8 45 82-136 15-60 (107)
68 2lri_C Autoimmune regulator; Z 92.2 0.13 4.3E-06 41.8 4.0 46 83-138 13-59 (66)
69 2ysl_A Tripartite motif-contai 92.1 0.11 3.8E-06 41.4 3.7 56 326-384 17-73 (73)
70 3asl_A E3 ubiquitin-protein li 92.1 0.079 2.7E-06 43.4 2.7 47 86-138 23-69 (70)
71 3rsn_A SET1/ASH2 histone methy 92.0 0.084 2.9E-06 50.9 3.3 54 81-137 4-58 (177)
72 1xwh_A Autoimmune regulator; P 91.7 0.076 2.6E-06 42.8 2.2 47 83-139 9-56 (66)
73 3hcs_A TNF receptor-associated 91.7 0.11 3.7E-06 48.6 3.6 68 324-396 13-81 (170)
74 2puy_A PHD finger protein 21A; 91.4 0.088 3E-06 41.5 2.3 43 86-138 10-52 (60)
75 2yur_A Retinoblastoma-binding 91.3 0.091 3.1E-06 42.5 2.3 51 327-380 13-64 (74)
76 2e6s_A E3 ubiquitin-protein li 91.0 0.16 5.4E-06 42.5 3.5 46 86-137 31-76 (77)
77 2csy_A Zinc finger protein 183 90.9 0.24 8.1E-06 40.5 4.6 55 328-389 14-69 (81)
78 2egp_A Tripartite motif-contai 90.3 0.017 5.7E-07 46.9 -3.0 60 329-389 12-74 (79)
79 3l11_A E3 ubiquitin-protein li 90.2 0.13 4.3E-06 45.0 2.4 63 329-396 15-85 (115)
80 1mm2_A MI2-beta; PHD, zinc fin 90.1 0.19 6.6E-06 39.9 3.1 46 83-138 10-56 (61)
81 1rmd_A RAG1; V(D)J recombinati 89.9 0.17 5.9E-06 44.2 3.1 65 327-396 21-87 (116)
82 2yt5_A Metal-response element- 88.8 0.33 1.1E-05 38.7 3.6 49 86-138 11-61 (66)
83 1fp0_A KAP-1 corepressor; PHD 88.6 0.65 2.2E-05 39.8 5.6 46 83-138 26-72 (88)
84 3shb_A E3 ubiquitin-protein li 88.4 0.23 7.9E-06 41.5 2.6 44 87-136 32-75 (77)
85 4ayc_A E3 ubiquitin-protein li 86.9 0.22 7.7E-06 45.1 1.7 59 329-393 53-114 (138)
86 2kwj_A Zinc finger protein DPF 86.9 0.31 1.1E-05 43.3 2.6 46 86-138 63-108 (114)
87 2ysm_A Myeloid/lymphoid or mix 86.4 0.47 1.6E-05 41.6 3.5 47 87-140 60-106 (111)
88 3ask_A E3 ubiquitin-protein li 86.2 0.43 1.5E-05 47.6 3.5 45 87-137 180-224 (226)
89 1g25_A CDK-activating kinase a 85.7 0.45 1.5E-05 37.1 2.8 52 330-385 4-60 (65)
90 2xeu_A Ring finger protein 4; 85.4 0.31 1.1E-05 37.4 1.7 50 330-384 4-60 (64)
91 3knv_A TNF receptor-associated 84.8 0.15 5E-06 47.0 -0.6 72 320-396 22-103 (141)
92 3ng2_A RNF4, snurf, ring finge 84.8 0.37 1.3E-05 37.9 1.9 50 330-384 11-67 (71)
93 2ect_A Ring finger protein 126 84.8 0.39 1.3E-05 38.8 2.0 51 329-384 15-68 (78)
94 1chc_A Equine herpes virus-1 r 84.7 0.55 1.9E-05 36.7 2.8 45 330-379 6-51 (68)
95 2ct2_A Tripartite motif protei 84.5 0.66 2.2E-05 37.9 3.3 51 329-382 15-70 (88)
96 4bbq_A Lysine-specific demethy 82.1 0.67 2.3E-05 40.8 2.6 42 94-138 73-114 (117)
97 2d8t_A Dactylidin, ring finger 81.5 0.29 9.8E-06 39.0 -0.0 48 329-381 15-62 (71)
98 1x4j_A Ring finger protein 38; 81.2 0.66 2.2E-05 37.2 2.0 47 330-381 24-73 (75)
99 3v43_A Histone acetyltransfera 80.7 1.2 4E-05 39.3 3.6 44 87-137 67-111 (112)
100 1bor_A Transcription factor PM 80.5 0.82 2.8E-05 34.9 2.3 46 329-382 6-51 (56)
101 2ecm_A Ring finger and CHY zin 80.5 1.2 3.9E-05 33.2 3.1 43 331-378 7-53 (55)
102 2ysj_A Tripartite motif-contai 80.3 0.97 3.3E-05 34.8 2.7 46 326-374 17-63 (63)
103 1wev_A Riken cDNA 1110020M19; 78.7 1.1 3.9E-05 38.0 2.8 51 86-139 21-73 (88)
104 2jx3_A Protein DEK; alpha heli 78.1 1.4 4.7E-05 40.4 3.3 33 2-34 78-110 (131)
105 3o36_A Transcription intermedi 77.0 1.7 5.7E-05 41.3 3.7 44 86-139 9-52 (184)
106 2ecj_A Tripartite motif-contai 76.9 2.4 8.3E-05 31.7 3.9 44 328-374 14-58 (58)
107 3u5n_A E3 ubiquitin-protein li 75.7 1.3 4.5E-05 42.9 2.7 44 86-139 12-55 (207)
108 4ap4_A E3 ubiquitin ligase RNF 75.5 1.4 4.7E-05 38.5 2.5 51 329-384 7-64 (133)
109 1e4u_A Transcriptional repress 74.7 3.4 0.00012 34.0 4.6 52 329-383 11-65 (78)
110 1iym_A EL5; ring-H2 finger, ub 72.7 2.1 7.2E-05 31.8 2.6 44 331-379 7-54 (55)
111 2ep4_A Ring finger protein 24; 70.9 2.3 8E-05 33.7 2.6 46 329-379 15-63 (74)
112 2ea6_A Ring finger protein 4; 69.7 1.8 6.1E-05 33.5 1.6 46 329-379 15-67 (69)
113 2kiz_A E3 ubiquitin-protein li 67.2 3.3 0.00011 32.3 2.8 47 329-380 14-63 (69)
114 4ic3_A E3 ubiquitin-protein li 65.9 1.5 5.1E-05 35.4 0.5 42 329-379 24-66 (74)
115 2ecg_A Baculoviral IAP repeat- 65.3 2.9 9.8E-05 33.7 2.1 44 328-380 24-68 (75)
116 1v87_A Deltex protein 2; ring- 64.7 2.8 9.6E-05 36.1 2.1 48 331-378 27-92 (114)
117 2ro1_A Transcription intermedi 64.3 3.6 0.00012 39.5 2.9 42 87-138 8-49 (189)
118 2ysm_A Myeloid/lymphoid or mix 64.2 7.4 0.00025 33.8 4.7 44 86-136 12-55 (111)
119 2do5_A Splicing factor 3B subu 64.0 7.1 0.00024 30.2 3.8 28 2-29 14-41 (58)
120 2vje_B MDM4 protein; proto-onc 60.0 3.1 0.00011 32.6 1.3 44 331-378 9-54 (63)
121 2ecl_A Ring-box protein 2; RNF 57.9 3.7 0.00013 33.6 1.5 32 347-383 47-79 (81)
122 2vje_A E3 ubiquitin-protein li 56.7 4.5 0.00015 31.7 1.8 45 331-379 10-56 (64)
123 4ap4_A E3 ubiquitin ligase RNF 55.9 3.3 0.00011 36.0 0.9 50 330-384 73-129 (133)
124 2ecn_A Ring finger protein 141 54.3 1.9 6.4E-05 33.9 -0.9 47 329-381 15-61 (70)
125 2l0b_A E3 ubiquitin-protein li 50.6 7.8 0.00027 32.2 2.4 47 329-380 40-89 (91)
126 3t6p_A Baculoviral IAP repeat- 49.3 4.7 0.00016 42.4 0.9 44 327-379 293-337 (345)
127 2yho_A E3 ubiquitin-protein li 48.8 4.3 0.00015 33.3 0.4 41 330-379 19-60 (79)
128 2ea5_A Cell growth regulator w 46.8 10 0.00035 30.1 2.4 41 330-379 16-57 (68)
129 2yrc_A Protein transport prote 46.5 2.4 8.3E-05 33.6 -1.3 15 363-377 28-42 (59)
130 2kqs_B Death domain-associated 45.1 7.1 0.00024 26.1 0.9 16 544-559 9-24 (26)
131 3v43_A Histone acetyltransfera 44.9 4.7 0.00016 35.4 0.1 40 93-136 23-62 (112)
132 2j9u_B VPS36, vacuolar protein 39.3 9.1 0.00031 31.9 1.0 10 366-375 15-24 (76)
133 6rxn_A Rubredoxin; electron tr 39.2 8.2 0.00028 29.1 0.6 12 366-377 28-39 (46)
134 1kcf_A Hypothetical 30.2 KD pr 36.6 22 0.00074 35.9 3.5 28 2-29 7-34 (258)
135 2y1n_A E3 ubiquitin-protein li 36.3 13 0.00044 39.8 1.8 49 329-382 332-381 (389)
136 1a62_A RHO; transcription term 34.8 22 0.00074 32.3 2.8 29 1-29 11-41 (130)
137 3vk6_A E3 ubiquitin-protein li 33.9 16 0.00053 32.1 1.6 45 331-378 3-47 (101)
138 1wim_A KIAA0161 protein; ring 33.3 8.1 0.00028 32.2 -0.3 53 329-381 5-67 (94)
139 1e8j_A Rubredoxin; iron-sulfur 31.5 15 0.0005 28.3 0.9 12 366-377 34-45 (52)
140 4rxn_A Rubredoxin; electron tr 31.5 13 0.00044 29.0 0.6 12 366-377 34-45 (54)
141 2v3b_B Rubredoxin 2, rubredoxi 31.4 14 0.00049 28.7 0.9 12 366-377 34-45 (55)
142 1yk4_A Rubredoxin, RD; electro 30.0 14 0.00049 28.4 0.6 12 366-377 33-44 (52)
143 2kn9_A Rubredoxin; metalloprot 28.9 16 0.00056 30.7 0.9 12 366-377 58-69 (81)
144 2k5c_A Uncharacterized protein 28.3 6.7 0.00023 33.3 -1.6 16 369-384 9-24 (95)
145 1dx8_A Rubredoxin; electron tr 28.0 16 0.00055 29.8 0.7 12 366-377 38-49 (70)
146 2kwj_A Zinc finger protein DPF 26.0 12 0.0004 32.9 -0.5 40 93-136 20-59 (114)
147 2e61_A Zinc finger CW-type PWW 25.3 58 0.002 26.5 3.5 41 93-144 15-55 (69)
148 3dpl_R Ring-box protein 1; ubi 25.1 29 0.00098 30.2 1.8 31 346-380 71-101 (106)
149 2jvx_A NF-kappa-B essential mo 25.0 22 0.00076 24.2 0.8 13 366-378 1-13 (28)
150 1s24_A Rubredoxin 2; electron 24.5 22 0.00077 30.3 0.9 12 366-377 66-77 (87)
151 2m0e_A Zinc finger and BTB dom 24.3 30 0.001 20.5 1.3 13 368-380 2-14 (29)
152 2kvh_A Zinc finger and BTB dom 22.9 25 0.00084 21.0 0.7 13 367-379 2-14 (27)
153 1p7a_A BF3, BKLF, kruppel-like 22.6 31 0.0011 22.2 1.2 14 367-380 10-23 (37)
154 1ard_A Yeast transcription fac 22.1 32 0.0011 20.5 1.1 13 368-380 2-14 (29)
155 1klr_A Zinc finger Y-chromosom 21.7 36 0.0012 20.3 1.3 13 368-380 2-14 (30)
156 2pv9_C Proteinase-activated re 21.3 28 0.00096 23.2 0.7 13 601-613 6-18 (26)
157 2d8s_A Cellular modulator of i 20.4 51 0.0017 27.0 2.3 39 338-381 30-71 (80)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=4.1e-55 Score=460.80 Aligned_cols=283 Identities=26% Similarity=0.423 Sum_probs=210.5
Q ss_pred ccccCCChhHhhhhccCceeeeeccccCCCCCCcceEEEEEEecccccccccC---------CCceEEE---EEEeecCC
Q 007048 136 RIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN---------TEYDVQA---WCILLNDK 203 (620)
Q Consensus 136 RL~~~DPF~~~i~~lL~Pv~l~~s~i~~~g~~~~qs~~~~F~Lt~~~~~~L~~---------~~~~lqv---~Ci~l~d~ 203 (620)
+++ .+|||+++++|++|+.|.++ ++.++|+..|.|.||++|...++. .+|.+|| +|+. ++.
T Consensus 19 ~~k-~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~~-~~~ 91 (360)
T 4fo9_A 19 QLK-NLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLA-ETS 91 (360)
T ss_dssp CBC-CCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEEC--C-
T ss_pred eec-CCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEEc-cCC
Confidence 666 47999999999999999764 356788999999999999877753 2455555 4765 567
Q ss_pred ccccccCCCceEEEECCeEeeecCCCCcccCCC-CCCCCCCc-ccccccCc---ccEEEEEEe-c-cceEEEEEEEEeec
Q 007048 204 VSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGS-NGRDDGAL-ITLYIGEG---VNQISLSGC-D-IRNFCFGVRLVKRQ 276 (620)
Q Consensus 204 ~~~~~~wP~~~~I~VNg~~v~~~~rP~~~~~g~-~~R~~~p~-IT~~lk~g---~N~I~Is~~-d-~~~y~~~V~lVk~~ 276 (620)
.++++.||.+++|+|||+.|+....-..++.|. ++|...|+ ||++++.+ .|+|+|+|. + ++.|+++|++|+++
T Consensus 92 ~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~lV~~~ 171 (360)
T 4fo9_A 92 CPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQL 171 (360)
T ss_dssp CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEEEEEC
T ss_pred CcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEEEEeC
Confidence 789999999999999999999742101123332 45556665 99999987 599999996 3 68999999999999
Q ss_pred CHHHHHHhccccCCCCcHHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEeecCCCCccceeccccCCCcCcccccCH
Q 007048 277 TVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL 356 (620)
Q Consensus 277 s~eqLl~~I~~~~~~~~~edal~rIkr~l~~~~~~~~dsDdD~eIv~~s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl 356 (620)
|+++|++.|+++ ...+.++++++|++.+.. |+|.||+++++.|||+||||++||++||||..|+|+|||||
T Consensus 172 s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~--------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl 242 (360)
T 4fo9_A 172 TSAMLLQRLKMK-GIRNPDHSRALIKEKLTA--------DPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDA 242 (360)
T ss_dssp CHHHHHHHHHTC--CBCHHHHHHHHHHHHC-----------------CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEH
T ss_pred CHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc--------CCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccCCH
Confidence 999999999863 356778899999998741 23446889999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHHhcCCCCceEEEEccCCcEEEeccCC---CCCCccccCCCC
Q 007048 357 ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGE---NNNLAEWHSPDG 433 (620)
Q Consensus 357 ~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e---~~~~~~w~~p~g 433 (620)
++||+|+++.++|+||||++.+++++|+||+||++||+ .+ .++++|+|++||+|++...+. +....+|...||
T Consensus 243 ~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~---~~-~~v~~I~v~~DGsW~p~~~k~e~~~~~~~~~~~~~~ 318 (360)
T 4fo9_A 243 ALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN---DC-SDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIES 318 (360)
T ss_dssp HHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT---TC-SSCCEEEECC-CCEEC--------------------
T ss_pred HHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH---hC-CCCCEEEECCCCceecCCCCcccccccCCCCCCccc
Confidence 99999999999999999999999999999999999964 45 489999999999999853332 245557777676
Q ss_pred Ccccc
Q 007048 434 STYAA 438 (620)
Q Consensus 434 ~~~~~ 438 (620)
.-.++
T Consensus 319 ~~~~~ 323 (360)
T 4fo9_A 319 SSVLS 323 (360)
T ss_dssp -----
T ss_pred ccccc
Confidence 55443
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-53 Score=446.68 Aligned_cols=267 Identities=22% Similarity=0.381 Sum_probs=213.7
Q ss_pred cCCChhHhhhhccCceeeeeccccCCCCCCcceEEEEEEecccccccccC--CCceEEEEEEeecCC---ccccccCCCc
Q 007048 139 RADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN--TEYDVQAWCILLNDK---VSFRMQWPLH 213 (620)
Q Consensus 139 ~~DPF~~~i~~lL~Pv~l~~s~i~~~g~~~~qs~~~~F~Lt~~~~~~L~~--~~~~lqv~Ci~l~d~---~~~~~~wP~~ 213 (620)
+..|||+.+..+-...... .. .....++.+.|+|+++++++|++ ++|+|+|||+.+++. ...+++||..
T Consensus 69 k~SPFY~i~~~i~~~~~~~----~~--~~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~ 142 (371)
T 3i2d_A 69 KESPFYKIQRLIPELVMNV----EV--TGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFP 142 (371)
T ss_dssp CCBTTEEEEEEEEEEEEEE----CC--EEEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSS
T ss_pred cCCCCceeeeecCCccccc----cc--cCCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCc
Confidence 4689998544332221111 11 12234688999999999999984 689999999998652 3567999999
Q ss_pred eEEEECCeEeeecCCCCcccCCCCCCCCCCcccccccCc--ccEEEEEEe-ccceEEEEEEEEeecCHHHHHHhccccCC
Q 007048 214 AELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEG--VNQISLSGC-DIRNFCFGVRLVKRQTVAQVLSLVPKETA 290 (620)
Q Consensus 214 ~~I~VNg~~v~~~~rP~~~~~g~~~R~~~p~IT~~lk~g--~N~I~Is~~-d~~~y~~~V~lVk~~s~eqLl~~I~~~~~ 290 (620)
++|+|||..|+...|+. ++++|+..|++||++++.+ .|+|+|+|. +.+.|+++|++|+++++++|++.|.++.
T Consensus 143 ~eI~VNg~~vk~n~rGl---Knk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~- 218 (371)
T 3i2d_A 143 NELRCNNVQIKDNIRGF---KSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHP- 218 (371)
T ss_dssp EEEEETTEECCSCCSSC---TTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSC-
T ss_pred eEEEECCEEeccccccC---CCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcC-
Confidence 99999999999766654 3457777788899999885 899999985 6789999999999999999999998753
Q ss_pred CCcHHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEeecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeee
Q 007048 291 GEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQ 370 (620)
Q Consensus 291 ~~~~edal~rIkr~l~~~~~~~~dsDdD~eIv~~s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~ 370 (620)
.++.++++++|++.+.. + +|.||+++++.|||+||||++||++|+||..|+|+|||||++||+|+++.++|+
T Consensus 219 ~i~~e~tl~~Ik~~ls~------d--~DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~ 290 (371)
T 3i2d_A 219 KIIKQATLLYLKKTLRE------D--EEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQ 290 (371)
T ss_dssp CBCHHHHHHHHHHHHHS------C--C------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCB
T ss_pred CCCHHHHHHHHHHHhcc------C--CCCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCcee
Confidence 46778899999988741 2 334588899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCeeecHHHHHHHHHHhcCCCCceEEEEccCCcEEEeccCCCCCCc
Q 007048 371 CPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLA 426 (620)
Q Consensus 371 CPiC~k~~~~~~L~ID~y~~~IL~~l~~~~~dv~eV~v~~DGsW~~~~~~e~~~~~ 426 (620)
||||++.+.+++|+||+||++|| ++++++|++|+|++||+|++..++++.+.+
T Consensus 291 CPIC~k~~~~~dL~ID~~~~~IL---~~~~~dve~V~v~~DGsW~p~~e~~~d~~~ 343 (371)
T 3i2d_A 291 CPVCQIDIALENLAISEFVDDIL---QNCQKNVEQVELTSDGKWTAILEDDDDSDS 343 (371)
T ss_dssp CTTTCCBCCGGGEEEBHHHHHHH---TTSCTTCCEEEEETTSCEEECC--------
T ss_pred CCCCCcccCHHHeeEcHHHHHHH---HhccCCccEEEECCCCCEEeccCCcCCCcc
Confidence 99999999999999999999984 567889999999999999999887775443
No 3
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=99.83 E-value=1.9e-21 Score=168.62 Aligned_cols=71 Identities=61% Similarity=0.881 Sum_probs=67.8
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcChhH-----------------HHHHHHHHHHHhhcccchhhhhcccCCCc
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG-----------------VARIIDDTYRKMQISEAADLAIMGQSGLD 63 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~~~-----------------v~~~I~e~y~~~~~~~~~~~a~~~~~~~~ 63 (620)
||||||+|++||||||||||+||||||+||+|++ |+++|+|+|||||+++++++|+++|.+++
T Consensus 22 ikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~~~~~~~K~~v~kE~vaKIVDDtYRKMqvSgAtDLASk~q~~sd 101 (110)
T 2rno_A 22 IKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSD 101 (110)
T ss_dssp HHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTTSCCCSTTGGGSHHHHHHHHHHHHHHHHCTTCCCSCTTCSSCSS
T ss_pred HHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcccccccccccccHHHHHHHHHHHHHHHhccCCccccccCccccC
Confidence 6899999999999999999999999999999977 99999999999999999999999999999
Q ss_pred cccceeccc
Q 007048 64 ICNVKVEME 72 (620)
Q Consensus 64 ~~~v~~~~~ 72 (620)
++ +++++|
T Consensus 102 ~s-~k~k~E 109 (110)
T 2rno_A 102 FS-FRPIEE 109 (110)
T ss_dssp SC-SCCCTT
T ss_pred cc-cccCCC
Confidence 98 888765
No 4
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.35 E-value=3.1e-13 Score=108.85 Aligned_cols=46 Identities=30% Similarity=0.490 Sum_probs=43.6
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcChhH---HHHHHHHHHHHh
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---VARIIDDTYRKM 46 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~~~---v~~~I~e~y~~~ 46 (620)
|+|||.+|+++|+||+|||+||++|||+||+..+ |+.||+|+|+++
T Consensus 16 VsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s~~v~~KIrELy~~r 64 (65)
T 1v66_A 16 VSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRR 64 (65)
T ss_dssp HHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999976 999999999874
No 5
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.30 E-value=1e-12 Score=108.13 Aligned_cols=66 Identities=48% Similarity=1.025 Sum_probs=56.1
Q ss_pred cccCCCCcccccCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccCC
Q 007048 75 DSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRAD 141 (620)
Q Consensus 75 ~~~~~~~~~rCiCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~D 141 (620)
++.+++..+||+||.....+.||+|++.+|+.|||..||++..++... ...|++|||+.||++|+|
T Consensus 3 d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~-~~~p~~~~C~~Cr~~r~D 68 (68)
T 2rsd_A 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES-AEVPPVFYCELCRLSRAD 68 (68)
T ss_dssp SCCCSSCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC-CCCCSSCCCHHHHHHHTC
T ss_pred CCcCCCCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc-cCCCCcEECcCccCcccC
Confidence 455678899999999888899999997789999999999998766433 346789999999999876
No 6
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.18 E-value=1e-11 Score=104.75 Aligned_cols=70 Identities=47% Similarity=0.951 Sum_probs=58.8
Q ss_pred cccccCCCCcccccCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccCCC
Q 007048 73 AEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 142 (620)
Q Consensus 73 ~~~~~~~~~~~rCiCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~DP 142 (620)
.++...+...++|+|+.....+.||+|+++.|..|||..||++..++..+.+..+.+|||+.|+..+.+|
T Consensus 7 ~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 7 GEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred cccccCCCCCEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 3555667789999999987788999999666999999999999987755455678999999999987665
No 7
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.71 E-value=6.4e-09 Score=105.91 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=68.9
Q ss_pred CceeeeeceEEeecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccC--CCCCCCCCCeeecHHHHHHHHH
Q 007048 318 DLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPI--CMKNYSLEDLIIDPYFHRITTM 395 (620)
Q Consensus 318 D~eIv~~s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPi--C~k~~~~~~L~ID~y~~~IL~~ 395 (620)
|.||+++...++|+|||++..|+-|+++..|.|. |+-..+..+-+..+.|.||+ |.+.+...+|+.|..+.++++.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHs--FcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHV--FDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE--EEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCc--ccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 3357778899999999999999999999999996 99999998877778899999 9999999999999999887764
Q ss_pred H
Q 007048 396 M 396 (620)
Q Consensus 396 l 396 (620)
.
T Consensus 248 ~ 248 (267)
T 3htk_C 248 A 248 (267)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.65 E-value=2.2e-08 Score=87.96 Aligned_cols=55 Identities=31% Similarity=0.626 Sum_probs=46.6
Q ss_pred CCCcccccCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccCC
Q 007048 79 LGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRAD 141 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~D 141 (620)
....+||+|+.....+.||+|+. |..|+|..|++++... .|+.|+|+.|+....+
T Consensus 25 ~~d~vrCiC~~~~~~~~mi~Cd~--C~~w~H~~C~~~~~~~------~p~~w~C~~C~~~~~~ 79 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDGYMICCDK--CSVWQHIDCMGIDRQH------IPDTYLCERCQPRNLD 79 (98)
T ss_dssp CCCBCCCTTSCCSCSSCEEEBTT--TCBEEETTTTTCCTTS------CCSSBCCTTTSSSCCC
T ss_pred CCCCEEeECCCccCCCcEEEcCC--CCCcCcCcCCCCCccC------CCCCEECCCCcCCCCC
Confidence 45689999999887889999999 9999999999987543 4678999999986543
No 9
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.56 E-value=2.6e-08 Score=77.56 Aligned_cols=49 Identities=29% Similarity=0.731 Sum_probs=42.2
Q ss_pred CcccccCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 007048 81 GKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (620)
Q Consensus 81 ~~~rCiCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL 137 (620)
..++|+|+.....+.||+|+. |+.|+|..|+++...+ .|+.|+|+.|+.
T Consensus 3 d~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~~~~------~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCCGGG------CCSSCCCHHHHT
T ss_pred cCeEEEeCCcCCCCCEEEcCC--CCccccccccCCCccc------CCCcEECcCCCC
Confidence 468999998766679999999 9999999999998643 468999999974
No 10
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.55 E-value=3.5e-08 Score=81.21 Aligned_cols=53 Identities=28% Similarity=0.714 Sum_probs=44.8
Q ss_pred CCCCcccccCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 78 NLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 78 ~~~~~~rCiCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
.+...++|+|+.....+.||+|+. |+.|+|..|+++...+ .|+.|+|+.|+..
T Consensus 15 ~~~~~~~CiC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~~~~------~~~~~~C~~C~~s 67 (68)
T 3o70_A 15 YFQGLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRDS 67 (68)
T ss_dssp TTTTCCCSTTCCCCTTCCEEECTT--TCCEEETTTTTCCTTS------CCSSCCCHHHHTC
T ss_pred CCCCceEeECCCcCCCCCEEECCC--CCccccccccCcCccc------CCCcEECCCCCCC
Confidence 345789999998776668999999 9999999999998653 4689999999854
No 11
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.42 E-value=1.2e-07 Score=78.47 Aligned_cols=54 Identities=30% Similarity=0.537 Sum_probs=44.3
Q ss_pred CCCcccccCCCCCCCC-CeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 79 LGGKIFCPCGTSLPSE-SKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~-~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
....++|+|+.....+ .||+|+. |+.|||..||++...+ ..|..|+|+.|+.++
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~~-----~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNAD-----ALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSS--SCEEEETTTTTCCTTS-----CCCSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCCCCcEEECCC--CCCccCCeeeccCccc-----cCCCcEECCCccCCC
Confidence 3467999999876544 7999999 9999999999998542 357899999998753
No 12
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.37 E-value=1.2e-07 Score=79.95 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=45.9
Q ss_pred CCCcccccCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccC
Q 007048 79 LGGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRA 140 (620)
Q Consensus 79 ~~~~~rCiCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~ 140 (620)
....++|+|+.... .+.||+|+. |+.|+|..|+++...+. ..+..|+|+.|+....
T Consensus 9 ~~~~~~C~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 9 ALVPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENA----VDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCSTTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHH----TTCSBBCCTTTTTTSC
T ss_pred cCCccEEEcCCccCCCCceEEcCC--CCCcEEeeecCcccccc----cCCCeEECCCcccccC
Confidence 34678999998764 689999999 99999999999976442 2368999999998653
No 13
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.35 E-value=4.1e-08 Score=82.05 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=44.9
Q ss_pred CcccccCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 81 GKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 81 ~~~rCiCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
...+|+|+.....+.||+|+. |+.|+|..|+++...+.+.+...+..|+|+.|+..
T Consensus 15 ~~~~C~C~~~~~~~~MI~Cd~--C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYCICRQPHNNRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCSTTCCCCCSSCEEECSS--SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEEECCCccCCCCEEEeCC--CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 469999998876678999998 99999999999986542222224689999999875
No 14
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.33 E-value=2.3e-07 Score=74.85 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=44.8
Q ss_pred CCCcccc-cCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 79 LGGKIFC-PCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 79 ~~~~~rC-iCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
++...+| +|+.... .+.||+|+. |+.|+|..|+++...+. ..+..|+|+.|+.++
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARA----EHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGG----GGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHh----cCCCcEECCCCcCcC
Confidence 3466889 9998763 578999998 99999999999987542 235799999999764
No 15
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.31 E-value=9.4e-08 Score=79.82 Aligned_cols=54 Identities=22% Similarity=0.465 Sum_probs=44.2
Q ss_pred CCcccccCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 80 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 80 ~~~~rCiCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
...++|+|+.... .+.||+|+. |+.|+|..|+++...+. ...+.|+|+.|+...
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~----~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEA----PDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTG----GGBSSCCCHHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCC--CCCCEeccccccccccc----CCCCEEECCCCcccC
Confidence 4678999998753 578999999 99999999999987652 224789999999764
No 16
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.27 E-value=8.4e-07 Score=77.05 Aligned_cols=56 Identities=25% Similarity=0.599 Sum_probs=45.3
Q ss_pred ccCCCCcccccCCCCCCCCCeeeecCcccc-ccccccccccCCCCcccccCCCCccccccccccc
Q 007048 76 SLNLGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 76 ~~~~~~~~rCiCg~sl~~~~mIqC~~~~C~-v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
...+....+|+|+... .+.||+|++..|. .|+|..||++...| ...|||+.|+..+
T Consensus 30 ~~d~~e~~yCiC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p-------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 30 PVDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 86 (91)
T ss_dssp CCCSCCCBCSTTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCC-------CSSCCCTTTCCCC
T ss_pred CcCCCCCcEEECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCC-------CCCEECcCccCcC
Confidence 3445678999999865 5789999996666 79999999998654 4689999998753
No 17
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.97 E-value=2e-06 Score=68.75 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=41.7
Q ss_pred CCCcccccCCCCCCCCCeeeecCcccc-ccccccccccCCCCcccccCCCCcccccccccc
Q 007048 79 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~~mIqC~~~~C~-v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
+....+|+|+... .+.||+|+...|. .|+|..|+++...| ...|||+.|+-+
T Consensus 6 ~~e~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 6 SNEPTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKP-------KGKWFCPRCVQE 58 (59)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHCC
T ss_pred CCCCcEEECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCC-------CCCEECcCccCc
Confidence 3467899999864 5789999997777 69999999998654 368999999865
No 18
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.97 E-value=2e-06 Score=69.51 Aligned_cols=53 Identities=26% Similarity=0.588 Sum_probs=41.8
Q ss_pred CCCcccccCCCCCCCCCeeeecCcccc-ccccccccccCCCCcccccCCCCccccccccccc
Q 007048 79 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~~mIqC~~~~C~-v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
+....+|+|+... .+.||+|+...|. .|+|..|+++...| ...|||+.|+.++
T Consensus 8 ~~e~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 8 PNEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKP-------KGKWYCPKCRGDN 61 (62)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHTCC
T ss_pred CCCCcEEECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCC-------CCCEECcCcccCC
Confidence 3567899999864 5789999994444 89999999998654 4799999998764
No 19
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.93 E-value=9e-06 Score=67.37 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=43.2
Q ss_pred CCCcccccCCCCCCCCCeeeecCcccc-ccccccccccCCCCcccccCCCCccccccccccc
Q 007048 79 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~~mIqC~~~~C~-v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
+....+|+|+... .+.||+|+...|. .|+|..||++...| ...|||+.|+..+
T Consensus 13 ~~~~~~C~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvgl~~~p-------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCSTTCCCS-CSSEECCSCSSCSCCCEETTTTTCSSCC-------SSCCCCTTTSSCS
T ss_pred CCCCCEEECCCCC-CCCEeEeeCCCCCCccEecccCCcCcCC-------CCCEECCCCCccc
Confidence 4567899999865 4789999996677 69999999987654 3689999998653
No 20
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=3.7e-06 Score=69.54 Aligned_cols=52 Identities=23% Similarity=0.604 Sum_probs=41.6
Q ss_pred CCCcccccCCCCCCCCCeeeecCccc-cccccccccccCCCCcccccCCCCcccccccccc
Q 007048 79 LGGKIFCPCGTSLPSESKIQCVDPRC-LVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~~mIqC~~~~C-~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
++...+|+|+... .+.||+|+...| ..|+|..||++...+ ...|||+.|+..
T Consensus 3 ~~~~~yC~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYCICNQVS-YGEMVGCDNQDCPIEWFHYGCVGLTEAP-------KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCSTTSCCC-CSSEECCSCTTCSCCCEEHHHHTCSSCC-------SSCCCCHHHHHH
T ss_pred CCCCeEEEcCCCC-CCCEeEeCCCCCCccCCcccccccCcCC-------CCCEECCCCCcc
Confidence 4577899999864 679999999223 389999999998654 578999999864
No 21
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.82 E-value=5.2e-06 Score=66.54 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=40.5
Q ss_pred CCCcccccCCCCCCCCCeeeecCcccc-ccccccccccCCCCcccccCCCCccccccccccc
Q 007048 79 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~~mIqC~~~~C~-v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
++...+|+|+... .+.||.|+...|. .|+|..|+++...| ...|||+.|+.+|
T Consensus 7 ~~e~~~C~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvgl~~~p-------~g~w~C~~C~~~r 60 (60)
T 2vnf_A 7 PNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQER 60 (60)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHC--
T ss_pred CCCCCEEECCCcC-CCCEEEeCCCCCCCceEehhcCCCCcCC-------CCCEECcCccCcC
Confidence 3467899999864 4789999995555 79999999987654 3689999998653
No 22
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.81 E-value=2.9e-06 Score=93.62 Aligned_cols=54 Identities=24% Similarity=0.475 Sum_probs=44.9
Q ss_pred CCCcccccCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 79 LGGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 79 ~~~~~rCiCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
.....+|+|+.... .+.||+|+. |+.|+|..|+++...+. ..++.|+|+.|+..
T Consensus 34 ~~~~~yC~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 34 PPPPVYCVCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHA----VDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCCEETTTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGG----GGEEEBCCHHHHHH
T ss_pred CCCCeEEeCCCcCCCCCCeEEccC--CCCceeeeecCcCcccc----cCCCEEECCCCcCC
Confidence 45789999998753 688999999 99999999999986542 23578999999975
No 23
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.66 E-value=5.9e-06 Score=78.67 Aligned_cols=55 Identities=27% Similarity=0.467 Sum_probs=43.3
Q ss_pred CCCcccccCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 79 LGGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 79 ~~~~~rCiCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
.+...+|+|+.... .+.||+|+. |..|+|..|+++...+ ...++.|+|+.|+...
T Consensus 5 ~~~~~~C~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~----~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYCICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSE----AELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHH----HTTCSSCCCHHHHHHH
T ss_pred CCCCcEeeCCCCCCCCCCEeECCC--CCchhChhhcCCchhh----ccCccCeecCCCcchh
Confidence 34678999998753 678999998 9999999999986432 2347899999999753
No 24
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.63 E-value=2.3e-05 Score=67.86 Aligned_cols=50 Identities=22% Similarity=0.646 Sum_probs=39.3
Q ss_pred CCCcccccCCCCCCCCCeeeecCcccc-ccccccccccCCCCcccccCCCCcccccc-cc
Q 007048 79 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCET-CR 136 (620)
Q Consensus 79 ~~~~~rCiCg~sl~~~~mIqC~~~~C~-v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~-CR 136 (620)
.+...+|+|+... .+.||.|++..|. .|+|..||++...| ...|||+. |+
T Consensus 23 ~~~~~yCiC~~~~-~g~MI~CD~c~C~~eWfH~~CVgl~~~p-------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYCFCRNVS-YGPMVACDNPACPFEWFHYGCVGLKQAP-------KGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCSTTTCCC-SSSEECCCSSSCSCSCEETTTSSCSSCT-------TSCCCSSHHHH
T ss_pred CCCCcEEEeCCCC-CCCEEEecCCCCccccCcCccCCCCcCC-------CCCccCChhhc
Confidence 4578899999754 4689999993333 89999999997654 26899999 97
No 25
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.63 E-value=2.1e-05 Score=65.25 Aligned_cols=52 Identities=29% Similarity=0.496 Sum_probs=41.7
Q ss_pred CCcccc-cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 80 GGKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 80 ~~~~rC-iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
....+| +|+.......||+|+. |..|+|..|++++..+. ....|+|+.|+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~~~~~~-----~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGIMAAPP-----EEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTCSSCCC-----SSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCC--CCcccccccCCCCccCC-----CCCCEEChhccCc
Confidence 355679 8998765557999999 99999999999986541 2368999999864
No 26
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.55 E-value=7.9e-06 Score=89.14 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=43.5
Q ss_pred CcccccCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 81 GKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 81 ~~~rCiCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
...+|+|+.... .+.||+|+. |+.|+|..|+++...+ ...++.|+|+.|+...
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~----~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEK----AADIDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHH----HTTEEECCCHHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCccc----ccCCCEEECCCCcccc
Confidence 568999998753 689999998 9999999999998643 1234799999999764
No 27
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.53 E-value=1.4e-05 Score=62.15 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=36.2
Q ss_pred ccccCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 007048 83 IFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (620)
Q Consensus 83 ~rCiCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CR 136 (620)
.-|+|+.... ...||+|++ .|+.|+|..|+++...+. .+..|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~-----~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMA-----ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHH-----HHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCcccc-----CCCCEECCCCC
Confidence 4577877653 567999994 499999999999975431 23789999986
No 28
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00039 Score=59.79 Aligned_cols=70 Identities=24% Similarity=0.501 Sum_probs=55.9
Q ss_pred EEeecCCCCccceeccccCCCcCcccccCHHHHHHH---H-cCCCeeeccC--CCCC-CCCCCeeecHHHHHHHHHHhc
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVEL---N-QRTRKWQCPI--CMKN-YSLEDLIIDPYFHRITTMMRN 398 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~---n-~~~~~W~CPi--C~k~-~~~~~L~ID~y~~~IL~~l~~ 398 (620)
...|.|||++..|+-|+....|-|. |+-...... + .......||+ |.+. +...+|+.|..+.++++..+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 3468899999999999998889998 665554443 3 2245789999 8877 899999999999998876643
No 29
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.02 E-value=9.6e-05 Score=71.73 Aligned_cols=59 Identities=25% Similarity=0.627 Sum_probs=41.0
Q ss_pred cccc-CCCCCCCC----CeeeecCccccccccccccccCCCCcccccCCC--CcccccccccccCCChh
Q 007048 83 IFCP-CGTSLPSE----SKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLP--PLFFCETCRIKRADPFW 144 (620)
Q Consensus 83 ~rCi-Cg~sl~~~----~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P--~~fyCe~CRL~~~DPF~ 144 (620)
.+|+ |+.....+ .||+|+. |+.|.|..|+++.....+.+...| ..|+|+.|+... .|-|
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~-~~~~ 68 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH-PAEW 68 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS-SCHH
T ss_pred CcCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC-CHHH
Confidence 3575 98875433 4999999 999999999999753222221223 389999999864 3444
No 30
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.90 E-value=0.0005 Score=54.32 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=29.4
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcCh
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 32 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~ 32 (620)
|.|||..|.+.||+.+|+|+||++|+.+.|..
T Consensus 15 V~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 15 LAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp HHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 57999999999999999999999999987754
No 31
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.82 E-value=0.00065 Score=52.65 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=29.6
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcCh
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 32 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~ 32 (620)
|.|||..|.+-||+.+|+|++|++|+.+.+..
T Consensus 15 V~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~ 46 (50)
T 1zrj_A 15 VNELREELQRRGLDTRGLKAELAERLQAALSG 46 (50)
T ss_dssp HHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 46999999999999999999999999988765
No 32
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0011 Score=59.68 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.2
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcChh
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 33 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~~ 33 (620)
|.|||++|.+.||+-+|+|+||++||.+.|...
T Consensus 42 VaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~ 74 (114)
T 2rnn_A 42 VSELKDICRSVSFPVSGRKAVLQDLIRNFLQNA 74 (114)
T ss_dssp HHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhc
Confidence 469999999999999999999999999997653
No 33
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.76 E-value=0.00078 Score=56.95 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=53.6
Q ss_pred eEEeecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHH
Q 007048 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (620)
Q Consensus 326 ~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 396 (620)
+.-.+.|||++..|+-|+... |-|. |+.......-.. ...||+|++.+..++|+-+..+.++++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 455789999999999999987 9998 776665544332 36899999999999999999998887644
No 34
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=96.61 E-value=0.00087 Score=56.02 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.9
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcCh
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 32 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~ 32 (620)
|.|||+.|.+-||+.+|+|+||++|+.+.+..
T Consensus 31 VaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 31 VAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp HHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 47999999999999999999999999887544
No 35
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=96.58 E-value=0.0014 Score=51.04 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=28.1
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLS 31 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~ 31 (620)
|.|||..|..-||+.+|+|.+|++|+.+...
T Consensus 10 V~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 10 VVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp HHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 4799999999999999999999999987643
No 36
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.57 E-value=0.00037 Score=61.75 Aligned_cols=52 Identities=17% Similarity=0.451 Sum_probs=38.4
Q ss_pred cCCCCC-CCCCeeeec-CccccccccccccccCCCCcccc-cCCCCccccccccccc
Q 007048 86 PCGTSL-PSESKIQCV-DPRCLVQQHISCVIIPEKPMEEI-RLLPPLFFCETCRIKR 139 (620)
Q Consensus 86 iCg~sl-~~~~mIqC~-~~~C~v~qH~~Cv~i~~kp~~~~-p~~P~~fyCe~CRL~~ 139 (620)
+|+... ..+.||+|+ . |+.|+|..||++.....+.+ .+....|+|+.|+...
T Consensus 8 iC~~p~~~~~~mi~Cdd~--C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEAS--CQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTCSBCCTTSCEEECTTT--TCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCccCCCCCEEEecCC--cccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 477663 356899999 6 99999999999986433222 2234799999999763
No 37
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.43 E-value=0.0036 Score=54.45 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=53.4
Q ss_pred eEEeecCCCCccceeccccCCCcC-cccccCHHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHH
Q 007048 326 IIVNLRCPMSGSRIRVAGRFKPCV-HTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (620)
Q Consensus 326 ~~VSL~CPls~~ri~~P~Rg~~C~-HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 396 (620)
+.-.+.|||++..|+-|+... |- |. ||-......-.. ...||+|++++..++|+-+..+.++++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~-cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLP-SSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeECC-CCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 345689999999999999964 66 97 776666555443 35899999999999999999998887654
No 38
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.42 E-value=0.00093 Score=53.38 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=43.1
Q ss_pred EeecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCCCee
Q 007048 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 328 VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 384 (620)
+++.||||+..|+-|+-...|-|. ||.++....-.+.. .||++++++..++|+
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIV 54 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcE
Confidence 578999999999999998788987 98888777654433 499999999888876
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.31 E-value=0.004 Score=52.40 Aligned_cols=67 Identities=21% Similarity=0.416 Sum_probs=52.9
Q ss_pred eecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCC-CCCCeeecHHHHHHHHHHhc
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY-SLEDLIIDPYFHRITTMMRN 398 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~IL~~l~~ 398 (620)
.|.|||.+..+.-|+.-..|.|.-|.. +..++. +.....||+|.+.+ ...+|..+..+.++++.++.
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---hcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 578999999999999875699996663 334443 33457999999997 68899999999999887653
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.24 E-value=0.0032 Score=51.39 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=51.5
Q ss_pred eecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHHh
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMR 397 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~ 397 (620)
.|.|||.+..|+-|+.. .|.|. |...-....-. .....||+|++.+...+|..+..+.++++...
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 57899999999999986 69998 55444444433 23678999999999999999999888877553
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.20 E-value=0.004 Score=54.32 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=55.2
Q ss_pred eEEeecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHHh
Q 007048 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMR 397 (620)
Q Consensus 326 ~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~ 397 (620)
+.-.+.|||++..|+-|+... |-|. ||-......-.. ...||+|+.++...+|+-+..+.++++...
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 345789999999999999987 9998 887766655443 468999999999999999999988876543
No 42
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.20 E-value=0.0023 Score=60.20 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=30.1
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHhcChh
Q 007048 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 33 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~~ 33 (620)
|.|||++|.+-||+.+|||+||++||.+.|...
T Consensus 66 V~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 66 VPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp HHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 469999999999999999999999999998764
No 43
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.18 E-value=0.00054 Score=55.73 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=36.1
Q ss_pred cccCCCCC-CCCCeeeec-CccccccccccccccCCCCccccc-CCCCcccccccc
Q 007048 84 FCPCGTSL-PSESKIQCV-DPRCLVQQHISCVIIPEKPMEEIR-LLPPLFFCETCR 136 (620)
Q Consensus 84 rCiCg~sl-~~~~mIqC~-~~~C~v~qH~~Cv~i~~kp~~~~p-~~P~~fyCe~CR 136 (620)
-++|+... ....||+|+ . |+.|+|..||++.....+-+. .....|+|+.|+
T Consensus 11 C~~C~~p~~~~~~mI~CD~~--C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEAS--CQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTT--TCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CccCCCccCCCCCeEecccC--ccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34577664 356899999 7 999999999999864322221 123489999885
No 44
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.93 E-value=0.0024 Score=70.63 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=37.5
Q ss_pred CcccccCCCC-C---CCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 81 GKIFCPCGTS-L---PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 81 ~~~rCiCg~s-l---~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
....|.+..+ + +...||+|+. |+.|+|..||++..... ...+.|+|+.|+..
T Consensus 39 ~~~~~s~kk~~~~~n~~~~mI~CD~--C~~WfH~~CVgi~~~~a----~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 39 EKPLMSKKKSHHHKKNDFQWIGCDS--CQTWYHFLCSGLEQFEY----YLYEKFFCPKCVPH 94 (528)
T ss_dssp ---CCSCCCTTTTTTSTTSEEECTT--TCCEEEGGGTTCCGGGT----TTEEECCCTTTHHH
T ss_pred hhccccccccccCCCcCCCEEECCC--CCcCCCCcCCCCChhHh----cCCCeEECcCCcCC
Confidence 3455555554 2 2457999999 99999999999986542 23589999999974
No 45
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=95.70 E-value=0.0088 Score=57.74 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=53.6
Q ss_pred EEeecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHH
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 396 (620)
.-.+.|||++..|+-|+.. .|-|. ||-......-..... .||+|+.++...+|+-+..+..+++..
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 4578899999999999998 69997 777666555433333 699999999999999999998887654
No 46
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=95.44 E-value=0.0053 Score=50.72 Aligned_cols=51 Identities=24% Similarity=0.463 Sum_probs=38.5
Q ss_pred ccccCCCC--CCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccCCC
Q 007048 83 IFCPCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 142 (620)
Q Consensus 83 ~rCiCg~s--l~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~DP 142 (620)
.-.+|+.. -..+.||.|+. |..+.|..|++++.- | ...|||+.|+..+.-|
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~v-----P--~g~W~C~~C~~~~~~p 70 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYI-----P--EGQWLCRHCLQSRARP 70 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSSC-----C--SSCCCCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCEEECCC--CCCccccccCCCCcC-----C--CCCcCCccCcCcCccC
Confidence 33457654 35678999999 999999999998742 2 2589999999765443
No 47
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.35 E-value=0.01 Score=51.14 Aligned_cols=70 Identities=21% Similarity=0.461 Sum_probs=56.2
Q ss_pred eEEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHHhcC
Q 007048 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNF 399 (620)
Q Consensus 326 ~~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~~ 399 (620)
+.-.+.|||-+..+.-|+.-..|.|.-|.+ +..|+... ...||+|.+.+..++|+...++.+|.+.++..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 344578999999999999878999997774 44555433 27899999999999999999998888776543
No 48
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.33 E-value=0.019 Score=48.95 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=53.8
Q ss_pred EEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHHhc
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRN 398 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~ 398 (620)
.-.+.|||-+..+.-|+....|.|.-|.+ +..|+. + .-.||+|.+.+...+|..+..+.++++.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~--~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS---Y--KTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT---T--CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH---C--CCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 34578999999999998888999986653 334443 2 3589999999999999999999999887654
No 49
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.05 E-value=0.0099 Score=51.33 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=38.6
Q ss_pred CCcccc-cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 80 GGKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 80 ~~~~rC-iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
.....| +|+..-..+.||.|+. |..+.|..|+..+.. .+|. ..|+|+.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~Ppl~---~~P~--g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLPPLP---EIPR--GIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTT--TCCEECSSSSSSCCS---SCCS--SCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCC--CCchhccccCCCCcc---cCCC--CCcCCccCcCc
Confidence 344456 6887655567999999 999999999985432 3333 58999999864
No 50
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.05 E-value=0.012 Score=55.03 Aligned_cols=70 Identities=27% Similarity=0.495 Sum_probs=54.7
Q ss_pred ceEEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCC-CCCCeeecHHHHHHHHHHhc
Q 007048 325 SIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY-SLEDLIIDPYFHRITTMMRN 398 (620)
Q Consensus 325 s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~IL~~l~~ 398 (620)
.+.-.+.|||.+..+.-|+....|.|.-|.+ +..|+. .....||+|.+.+ ....|..|..+.+++..+..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 3445679999999999999888999997764 344443 2357899999988 45789999999999887743
No 51
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.99 E-value=0.012 Score=44.85 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=34.2
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL 137 (620)
+|+..-..+.||.|+. |..|.|..|+..+.. .+|. ..|+|+.|+.
T Consensus 5 vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p~l~---~~P~--g~W~C~~C~~ 49 (51)
T 1f62_A 5 VCRKKGEDDKLILCDE--CNKAFHLFCLRPALY---EVPD--GEWQCPACQP 49 (51)
T ss_dssp TTCCSSCCSCCEECTT--TCCEECHHHHCTTCC---SCCS--SCCSCTTTSC
T ss_pred CCCCCCCCCCEEECCC--CChhhCcccCCCCcC---CCCC--CcEECcCccc
Confidence 4776655678999998 999999999975432 2333 5899999974
No 52
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.87 E-value=0.022 Score=50.67 Aligned_cols=65 Identities=12% Similarity=0.291 Sum_probs=52.0
Q ss_pred EEeecCCCCccceeccccCCCcCcccccCH-HHHHHHHcCCCeeeccCCCCCCCC-CCeeecHHHHHHHHHH
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSL-EDLIIDPYFHRITTMM 396 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~-~~L~ID~y~~~IL~~l 396 (620)
.-.+.|||.+..+.-|+.- .|.|.-|.+- ..|+. .....||+|.+.+.. .+|..+..+.++++.+
T Consensus 50 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred ccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 4457899999999999876 8999977643 34554 345699999999987 7899999999987654
No 53
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=94.87 E-value=0.01 Score=50.92 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=40.7
Q ss_pred cccccCCCCC--CCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccCCChhH
Q 007048 82 KIFCPCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWI 145 (620)
Q Consensus 82 ~~rCiCg~sl--~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~DPF~~ 145 (620)
..-++|+... ..+.||.|+. |..+.|..|++++.- | ...|||+.|+.....+|.+
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~v-----P--~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYI-----P--EGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSSC-----C--SSCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCCCCCCCEEECCC--CCchhhcccCCCCcc-----C--CCceECccccCccchhhhh
Confidence 3344687653 4568999998 999999999998742 2 2589999999877666653
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.85 E-value=0.019 Score=50.66 Aligned_cols=63 Identities=21% Similarity=0.431 Sum_probs=51.7
Q ss_pred eecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHHhc
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRN 398 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l~~ 398 (620)
.|.|||-+..+.-|+....|.|.-|.. +..++. ..||+|.+.+...+|..+..+..++..++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 578999999999999887999987764 333432 579999999999999999999988876554
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.84 E-value=0.018 Score=57.23 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=49.5
Q ss_pred EeecCCCCccceeccccCCCcCccccc-CHHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHH
Q 007048 328 VNLRCPMSGSRIRVAGRFKPCVHTGCF-DLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (620)
Q Consensus 328 VSL~CPls~~ri~~P~Rg~~C~HlQCF-Dl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 396 (620)
-.+.|||+...|+-|+... |-|.=|- -+..|+..+ .. .||+|+.++...+|+.+.-+.++++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~--~~--~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRV--GH--FNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHT--CS--SCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHC--CC--CCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 3578999999999999866 9998444 234444322 22 299999999999999999999887654
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.73 E-value=0.038 Score=47.93 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=51.2
Q ss_pred EEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCC----CeeecHHHHHHHHHH
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLE----DLIIDPYFHRITTMM 396 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~----~L~ID~y~~~IL~~l 396 (620)
.-.+.|||-...+.-|+....|.|.-|.. +..++ .. .-.||+|.+.+... +|..+..+.++++.+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~---~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL---ET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH---TS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHH---Hh--CCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 44577999999999999988999996653 23333 22 27899999998876 899999999988765
No 57
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.59 E-value=0.028 Score=44.82 Aligned_cols=52 Identities=17% Similarity=0.421 Sum_probs=38.5
Q ss_pred cCCCCccccc-CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 77 LNLGGKIFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 77 ~~~~~~~rCi-Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
+......+|. |+. .+.|+.|+. |..+.|..|+..+... +| ...++|+.|+-.
T Consensus 6 ~~~~~~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~p~l~~---~p--~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ---GGEIILCDT--CPRAYHMVCLDPDMEK---AP--EGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSC---CSSEEECSS--SSCEEEHHHHCTTCCS---CC--CSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCC---CCcEEECCC--CChhhhhhccCCCCCC---CC--CCceECcccccc
Confidence 3344556775 885 368999998 9999999999986432 23 368999999854
No 58
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.37 E-value=0.025 Score=48.95 Aligned_cols=61 Identities=23% Similarity=0.452 Sum_probs=44.0
Q ss_pred eecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHH
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRI 392 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~I 392 (620)
.+.|||-+..++-|+. ..|.|.-|.. +..++. .......||+|.+.+...+|..+..+.++
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~ 82 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLN--QKKGPSQCPLCKNDITKRSLQESTRFSQL 82 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHH--SSSSSCCCTTTSCCCCTTTCBCCCSSSHH
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHH--hCCCCCCCcCCCCcCCHhhcCccHHHHHH
Confidence 4679999999999988 5899997764 344443 23345899999999998877665443333
No 59
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=94.25 E-value=0.041 Score=51.16 Aligned_cols=66 Identities=15% Similarity=0.368 Sum_probs=52.8
Q ss_pred EEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCC-CeeecHHHHHHHHHHh
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLE-DLIIDPYFHRITTMMR 397 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~-~L~ID~y~~~IL~~l~ 397 (620)
.-.|.|||.+..+.-|+. ..|.|.-|.. +..++. .....||+|...+... .|..+..+.+|++.+.
T Consensus 76 ~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred ccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 345789999999999998 6999987763 444443 2456899999999988 8999999999987653
No 60
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.21 E-value=0.03 Score=49.55 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=52.3
Q ss_pred ceEEeecCCCCccceeccccCCCcCcccccCH-HHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHH
Q 007048 325 SIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (620)
Q Consensus 325 s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 396 (620)
.+.-.+.|||-+..+..|+.. .|.|.-|.+- ..|+.... ..||+|.+.+...++.-+.++.+++..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 345568899999999999885 7999977643 34454332 2899999999999999999998886654
No 61
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.98 E-value=0.0098 Score=48.58 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=46.5
Q ss_pred EEeecCCCCccceeccccCCCcCcccccCH-HHHHHHHc-CCCeeeccCCCCCCCCCCeeecHHHHH
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQ-RTRKWQCPICMKNYSLEDLIIDPYFHR 391 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~-~~~~W~CPiC~k~~~~~~L~ID~y~~~ 391 (620)
.-.+.|||-+..+.-|+. ..|.|.-|.+- ..|+.... ......||+|.+.+..++|..+..+.+
T Consensus 17 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred ccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 345789999999999986 46999976643 33443321 235789999999999988888765433
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.68 E-value=0.007 Score=53.88 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=29.7
Q ss_pred CeeeecCccccccccccccccCCCCcccccCCC--Ccccccccccc
Q 007048 95 SKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLP--PLFFCETCRIK 138 (620)
Q Consensus 95 ~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P--~~fyCe~CRL~ 138 (620)
.||+|+. |..|+|..|++++....+-+...| ..|.|+.|.-.
T Consensus 1 ~mi~c~~--c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSC--CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred Ccccccc--CCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 4999999 999999999998753211222223 36889988653
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.41 E-value=0.057 Score=42.51 Aligned_cols=52 Identities=12% Similarity=0.314 Sum_probs=39.7
Q ss_pred EEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCe
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDL 383 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L 383 (620)
.-.+.|||-...++-|+. ..|.|.-|.+ +..++. .....||+|.+.+..++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT----TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH----hCcCCCCCCCcCCChhhc
Confidence 346789999999999998 6999996653 333442 445689999999987765
No 64
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.60 E-value=0.078 Score=41.32 Aligned_cols=44 Identities=30% Similarity=0.716 Sum_probs=33.1
Q ss_pred cccc-CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 007048 83 IFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (620)
Q Consensus 83 ~rCi-Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CR 136 (620)
..|. |+.. +.||.|+. |..+.|..|+..+.. .+|. ..|+|+.|+
T Consensus 10 ~~C~vC~~~---g~ll~Cd~--C~~~~H~~Cl~ppl~---~~p~--g~W~C~~C~ 54 (56)
T 2yql_A 10 DFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIPK--GMWICPRCQ 54 (56)
T ss_dssp CSCSSSCCS---SCCEECSS--SSCEECSSSSSSCCC---SCCC--SSCCCHHHH
T ss_pred CCCccCCCC---CeEEEcCC--CCcceECccCCCCcC---CCCC--CceEChhhh
Confidence 4464 7753 57999998 999999999996433 2332 589999986
No 65
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.46 E-value=0.03 Score=45.63 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=46.3
Q ss_pred eEEeecCCCCccceeccccCCCcCcccccCH-HHHHHHH-cCCCeeeccCCCCCCCCCCeeecHHH
Q 007048 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELN-QRTRKWQCPICMKNYSLEDLIIDPYF 389 (620)
Q Consensus 326 ~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n-~~~~~W~CPiC~k~~~~~~L~ID~y~ 389 (620)
+.-.+.|||-+..++-|+.. .|.|.-|.+- ..++... .......||+|.+.+...+|..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 34467899999999999875 7999977653 3444432 23457899999999998888766544
No 66
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.27 E-value=0.081 Score=42.42 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=41.8
Q ss_pred EEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCee
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 384 (620)
.-.+.|||-+..+.-|+.-..|.|.-|.. +..|+.. .-+||+|.+.+...++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 34678999999999999888999997774 4556643 36899999998876653
No 67
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=92.16 E-value=0.1 Score=46.34 Aligned_cols=45 Identities=20% Similarity=0.524 Sum_probs=33.7
Q ss_pred ccccc-CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 007048 82 KIFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (620)
Q Consensus 82 ~~rCi-Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CR 136 (620)
...|. |+ ..+.||.|+...|..|.|..|+++...| ...|||+.|+
T Consensus 15 ~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P-------~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCG---DGGELVMCDKKDCPKAYHLLCLNLTQPP-------YGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTC---CCSEEEECCSTTCCCEECTGGGTCSSCC-------SSCCCCGGGB
T ss_pred CCCCCcCC---CCCcEeEECCCCCCcccccccCcCCcCC-------CCCEECCCCC
Confidence 34566 55 3578999995559999999999965433 3579999765
No 68
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.15 E-value=0.13 Score=41.79 Aligned_cols=46 Identities=20% Similarity=0.500 Sum_probs=34.2
Q ss_pred ccc-cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 83 IFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 83 ~rC-iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
.+| +|+. .+.||.|+. |..++|..|+..+... +| ...|+|+.|+..
T Consensus 13 ~~C~vC~~---~~~ll~Cd~--C~~~~H~~Cl~P~l~~---~P--~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGD---GTDVLRCTH--CAAAFHWRCHFPAGTS---RP--GTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSC---CTTCEECSS--SCCEECHHHHCTTTCC---CC--SSSCCCTTTTTC
T ss_pred CCcCCCCC---CCeEEECCC--CCCceecccCCCccCc---CC--CCCEECccccCC
Confidence 345 4774 467999999 9999999999765432 33 357999999854
No 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.14 E-value=0.11 Score=41.35 Aligned_cols=56 Identities=14% Similarity=0.452 Sum_probs=41.4
Q ss_pred eEEeecCCCCccceeccccCCCcCcccccCHHHHHHHHc-CCCeeeccCCCCCCCCCCee
Q 007048 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQ-RTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 326 ~~VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC~k~~~~~~L~ 384 (620)
+.-.+.|||-+..+.-|+.- .|.|.-|.+ -+....+ ......||+|.+.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLK--CITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEEHH--HHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhhHH--HHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 34468899999999999887 999996653 3333322 24567999999999887763
No 70
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=92.08 E-value=0.079 Score=43.42 Aligned_cols=47 Identities=23% Similarity=0.594 Sum_probs=35.1
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
+|+.+-..+.||.|+. |..+.|..|+..+.. .+|+. ..++|+.|+..
T Consensus 23 ~C~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~---~~P~g-~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPLS---SVPSE-DEWYCPECRND 69 (70)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEEGGGSSSCCS---SCCSS-SCCCCTTTSCC
T ss_pred CCCCcCCCCCEEEcCC--CCCceecccCCCCcC---CCCCC-CCcCCcCccCc
Confidence 4676666778999999 999999999985432 33321 27999999853
No 71
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=92.01 E-value=0.084 Score=50.85 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=34.1
Q ss_pred CcccccCCCCCC-CCCeeeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 007048 81 GKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (620)
Q Consensus 81 ~~~rCiCg~sl~-~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL 137 (620)
...+|.||..-. +..|+||.. |..|.|..|+.....++.++ ..-=.|.|..|.-
T Consensus 4 ~~~yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp~-~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 4 QAGSVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLPF-MTNYSFHCNVCHH 58 (177)
T ss_dssp -------CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCTT-CCSEEEECTTTST
T ss_pred eeeEEEcCCCCCCCceeEeecc--ccceecHHHhcccccCcccc-ceeEEEEccccCC
Confidence 456899998533 567999999 99999999999766543221 1233567988875
No 72
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=91.70 E-value=0.076 Score=42.81 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=35.1
Q ss_pred cccc-CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 83 IFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 83 ~rCi-Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
..|. |+.. +.||.|+. |..+.|..|+..+.. .+|. ..|+|+.|+..+
T Consensus 9 ~~C~vC~~~---g~ll~CD~--C~~~fH~~Cl~ppl~---~~P~--g~W~C~~C~~~~ 56 (66)
T 1xwh_A 9 DECAVCRDG---GELICCDG--CPRAFHLACLSPPLR---EIPS--GTWRCSSCLQAT 56 (66)
T ss_dssp CSBSSSSCC---SSCEECSS--CCCEECTTTSSSCCS---SCCS--SCCCCHHHHHTC
T ss_pred CCCccCCCC---CCEEEcCC--CChhhcccccCCCcC---cCCC--CCeECccccCcc
Confidence 4454 8753 57999999 999999999995432 2333 689999998653
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=91.69 E-value=0.11 Score=48.59 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=52.6
Q ss_pred eceEEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHHHHHHHHH
Q 007048 324 DSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (620)
Q Consensus 324 ~s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~IL~~l 396 (620)
+.+.-.|.|||-+..++.|+. ..|.|.-|.+ +..++.... ..||+|.+.+...+|..|.++.+++..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 345557899999999999988 5899997764 334443322 2999999999999999999998876543
No 74
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.39 E-value=0.088 Score=41.54 Aligned_cols=43 Identities=26% Similarity=0.584 Sum_probs=32.6
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
+|+.. +.||.|+. |..+.|..|+..+.. .+|. ..|+|+.|+-.
T Consensus 10 vC~~~---g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p~--g~W~C~~C~~~ 52 (60)
T 2puy_A 10 VCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIPK--GMWICPRCQDQ 52 (60)
T ss_dssp TTCCC---SSCEECSS--SSCEECGGGSSSCCS---SCCC--SCCCCHHHHHH
T ss_pred CCCCC---CcEEEcCC--CCcCEECCcCCCCcC---CCCC--CceEChhccCh
Confidence 47753 67999998 999999999995432 2333 58999999753
No 75
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=91.32 E-value=0.091 Score=42.49 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=38.3
Q ss_pred EEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCC
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 380 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 380 (620)
.-.+.|||-...+.-|+....|.|.-|.. +..|+.. .....||+|.+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---SDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---SSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---cCCCcCCCCCCcCCC
Confidence 44678999999999999966699997775 4455543 235689999987543
No 76
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.01 E-value=0.16 Score=42.46 Aligned_cols=46 Identities=24% Similarity=0.654 Sum_probs=34.4
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL 137 (620)
+|+.+-..+.||.|+. |..+.|..|+..+.. .+|.. ..++|+.|+.
T Consensus 31 vC~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~---~~P~g-~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCDE--CNVAYHIYCLNPPLD---KVPEE-EYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCSTTEEECSS--SCCEEETTSSSSCCS---SCCCS-SCCCCTTTCC
T ss_pred CcCCcCCCCCEEEcCC--CCccccccccCCCcc---CCCCC-CCcCCcCccC
Confidence 3777666788999999 999999999985432 33321 2799999973
No 77
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.93 E-value=0.24 Score=40.48 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.8
Q ss_pred EeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCeeecHHH
Q 007048 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYF 389 (620)
Q Consensus 328 VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~ 389 (620)
..+.|||-+..+..|+. ..|.|.-|.. +..|+.. ...||+|.+.+. ..+.....+
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-----TPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-----CSBCSSSCCBCC-SCCEECHHH
T ss_pred CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-----CCcCCCcCcccc-ccCCcHHHH
Confidence 35789999999999987 6899997763 3344432 458999999986 666666444
No 78
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=90.32 E-value=0.017 Score=46.88 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=41.0
Q ss_pred eecCCCCccceeccccCCCcCcccccCHH-HHHHHH--cCCCeeeccCCCCCCCCCCeeecHHH
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLE-TFVELN--QRTRKWQCPICMKNYSLEDLIIDPYF 389 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n--~~~~~W~CPiC~k~~~~~~L~ID~y~ 389 (620)
.+.|||-+..+.-|+. ..|.|.-|.+-- .|+... .......||+|.+.+...+|..+..+
T Consensus 12 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 74 (79)
T 2egp_A 12 EVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHL 74 (79)
T ss_dssp CCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSS
T ss_pred CCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHH
Confidence 5679999999999987 489998664321 122110 11236799999999988777665443
No 79
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=90.16 E-value=0.13 Score=44.99 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=47.7
Q ss_pred eecCCCCccceeccccCCCcCcccccCHH-HHHHHHcCCCeeeccCCCCCCCC-------CCeeecHHHHHHHHHH
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLE-TFVELNQRTRKWQCPICMKNYSL-------EDLIIDPYFHRITTMM 396 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~~~~~W~CPiC~k~~~~-------~~L~ID~y~~~IL~~l 396 (620)
.|.|||-+..+.-|+.- .|.|.-|.+-- .++ ......||+|.+.+.. .++.+|..+.++++..
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPCFQSTV----EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCC----CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHHHHHHH----hHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 57899999999999887 79998665321 222 2235789999999874 7888999988887643
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.10 E-value=0.19 Score=39.88 Aligned_cols=46 Identities=28% Similarity=0.638 Sum_probs=34.3
Q ss_pred cccc-CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 83 IFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 83 ~rCi-Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
..|. |+. .+.|+.|+. |..++|..|+..+.. .+| ...|+|+.|+..
T Consensus 10 ~~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p--~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKD---GGELLCCDT--CPSSYHIHCLNPPLP---EIP--NGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCC---CSSCBCCSS--SCCCBCSSSSSSCCS---SCC--SSCCCCTTTTTT
T ss_pred CcCCCCCC---CCCEEEcCC--CCHHHcccccCCCcC---cCC--CCccCChhhcCc
Confidence 3453 774 467999999 999999999996532 233 358999999864
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.95 E-value=0.17 Score=44.18 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=47.9
Q ss_pred EEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCee-ecHHHHHHHHHH
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI-IDPYFHRITTMM 396 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~-ID~y~~~IL~~l 396 (620)
.-.+.|||-+..+.-|+. ..|.|.-|.. +..++... .-.||+|.+.+...+|. .+..+.++++.+
T Consensus 21 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 21 VKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred cCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 346889999999999998 5899997764 34455432 34799999999988875 566666665544
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=88.76 E-value=0.33 Score=38.70 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=35.2
Q ss_pred cCCCC--CCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 86 PCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 86 iCg~s--l~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
+|+.. ...+.||.|+. |..+.|..|++.+... +.++ ....|+|+.|+..
T Consensus 11 vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~-~~~~-p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 11 ICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDS-SVID-SDEKWLCRQCVFA 61 (66)
T ss_dssp SSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCH-HHHH-SSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccc-cccC-CCCCEECCCCcCc
Confidence 57764 33578999999 9999999999975421 0010 2357999999864
No 83
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.60 E-value=0.65 Score=39.84 Aligned_cols=46 Identities=17% Similarity=0.547 Sum_probs=33.8
Q ss_pred cccc-CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 83 IFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 83 ~rCi-Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
..|. |+.. +.++.|+. |...+|..|+..+. ..+|. ..|+|+.|+..
T Consensus 26 ~~C~vC~~~---g~LL~CD~--C~~~fH~~Cl~PpL---~~~P~--g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKP---GDLVMCNQ--CEFCFHLDCHLPAL---QDVPG--EEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSS---SCCEECTT--SSCEECTTSSSTTC---CCCCS--SSCCCCSCCCC
T ss_pred CcCcCcCCC---CCEEECCC--CCCceecccCCCCC---CCCcC--CCcCCccccCC
Confidence 3454 7643 57999999 99999999996543 23333 58999999864
No 84
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=88.45 E-value=0.23 Score=41.49 Aligned_cols=44 Identities=25% Similarity=0.669 Sum_probs=32.8
Q ss_pred CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 007048 87 CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (620)
Q Consensus 87 Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CR 136 (620)
|+..-..+.||.|+. |..+.|..|+..+.. .+|.. ..++|+.|+
T Consensus 32 C~~~~d~~~ll~CD~--C~~~yH~~Cl~PpL~---~~P~g-~~W~C~~C~ 75 (77)
T 3shb_A 32 CGGRQDPDKQLMCDE--CDMAFHIYCLDPPLS---SVPSE-DEWYCPECR 75 (77)
T ss_dssp TCCCSCGGGEEECTT--TCCEEETTTSSSCCS---SCCSS-SCCCCTTTC
T ss_pred cCCCCCCcceeEeCC--CCCccCcccCCCccc---CCCCC-CceECcCcc
Confidence 555555678999999 999999999985532 33432 339999997
No 85
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=86.86 E-value=0.22 Score=45.07 Aligned_cols=59 Identities=25% Similarity=0.570 Sum_probs=40.1
Q ss_pred eecCCCCccceeccccCCCcCcccccCH-HHHHHHHcCCCeeeccCCCCCCCCC--CeeecHHHHHHH
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLE--DLIIDPYFHRIT 393 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~--~L~ID~y~~~IL 393 (620)
.|.|||.+..+.-|+- ..|.|.-|.+- ..|+ . ..-.||+|.+.+.-. ++.+|..+..++
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~---~--~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYCINEWM---K--RKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHT---T--TCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHHHHHHH---H--cCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 3679999999999875 57999877654 2333 2 235699999887533 455565555543
No 86
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.85 E-value=0.31 Score=43.29 Aligned_cols=46 Identities=28% Similarity=0.470 Sum_probs=35.5
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
+|+.....+.|+.|+. |..+.|..|+..+. ..+|. ..|+|+.|+..
T Consensus 63 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl---~~~P~--g~W~C~~C~~~ 108 (114)
T 2kwj_A 63 LCGTSENDDQLLFCDD--CDRGYHMYCLNPPV---AEPPE--GSWSCHLCWEL 108 (114)
T ss_dssp TTTCCTTTTTEEECSS--SCCEEETTTSSSCC---SSCCS--SCCCCHHHHHH
T ss_pred cccccCCCCceEEcCC--CCccccccccCCCc---cCCCC--CCeECccccch
Confidence 4777666688999999 99999999998543 23343 57999999754
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.40 E-value=0.47 Score=41.59 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=36.2
Q ss_pred CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccC
Q 007048 87 CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRA 140 (620)
Q Consensus 87 Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~ 140 (620)
|+.......|+.|+. |..+.|..|+..+. ..+|. ..|+|+.|+....
T Consensus 60 C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl---~~~P~--g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 60 CKQSGEDSKMLVCDT--CDKGYHTFCLQPVM---KSVPT--NGWKCKNCRICIS 106 (111)
T ss_dssp TCCCSCCTTEEECSS--SCCEEEGGGSSSCC---SSCCS--SCCCCHHHHCCSC
T ss_pred cCccCCCCCeeECCC--CCcHHhHHhcCCcc---ccCCC--CCcCCcCCcCcCC
Confidence 776655567999999 99999999998543 33443 5899999987653
No 88
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=86.17 E-value=0.43 Score=47.64 Aligned_cols=45 Identities=24% Similarity=0.634 Sum_probs=30.1
Q ss_pred CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 007048 87 CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (620)
Q Consensus 87 Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL 137 (620)
|+.+-..+.|+.|+. |..+.|..|+..+.. .+|.. ..++|+.|+.
T Consensus 180 C~~~~~~~~lL~CD~--C~~~yH~~CL~PPL~---~vP~G-~~W~Cp~C~~ 224 (226)
T 3ask_A 180 CGGRQDPDKQLMCDE--CDMAFHIYCLDPPLS---SVPSE-DEWYCPECRN 224 (226)
T ss_dssp SCCCCC--CCEECSS--SCCEECSCC--CCCC---SCCSS-SCCCCGGGC-
T ss_pred CCCCCCCCCeEEcCC--CCcceeCccCCCCcc---cCCCC-CCCCCcCCcC
Confidence 666655678999999 999999999985432 33321 2799999974
No 89
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.72 E-value=0.45 Score=37.10 Aligned_cols=52 Identities=19% Similarity=0.403 Sum_probs=37.3
Q ss_pred ecCCCCcc-ceecccc---CCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCeee
Q 007048 330 LRCPMSGS-RIRVAGR---FKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLII 385 (620)
Q Consensus 330 L~CPls~~-ri~~P~R---g~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~I 385 (620)
+.||+-+. .+.-|.+ ...|.|.-|.. +..++. ....+||+|++.+...+++-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 46999999 7888864 46899986653 233332 23568999999998887754
No 90
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.43 E-value=0.31 Score=37.36 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.2
Q ss_pred ecCCCCccceeccc------cCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCee
Q 007048 330 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 330 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 384 (620)
+.|||-+..+..|. ....|.|.-|.+ +..|+.. ...||+|.+.+...++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 56999999888774 456899986654 3445543 34899999998877654
No 91
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=84.84 E-value=0.15 Score=46.96 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=51.5
Q ss_pred eeeeeceEEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCC---------CCeeecHHH
Q 007048 320 EIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL---------EDLIIDPYF 389 (620)
Q Consensus 320 eIv~~s~~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~---------~~L~ID~y~ 389 (620)
++....+.-.|.|||-...++-|+. ..|.|.-|.. +..|+ +.....||+|.+.+.+ .++.-|.++
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASIL----SSGPQNCAACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHG----GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHH----hcCCCCCCCCCCcccccccccccchhhhcccHHH
Confidence 3444556667899999999999988 4999997764 33333 2344689999887543 356788888
Q ss_pred HHHHHHH
Q 007048 390 HRITTMM 396 (620)
Q Consensus 390 ~~IL~~l 396 (620)
.+.+..|
T Consensus 97 ~~~i~~L 103 (141)
T 3knv_A 97 RREVESL 103 (141)
T ss_dssp HHHHHTS
T ss_pred HHHHccc
Confidence 8876544
No 92
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=84.81 E-value=0.37 Score=37.89 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.5
Q ss_pred ecCCCCccceeccc------cCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCee
Q 007048 330 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 330 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 384 (620)
+.|||-+..+..|. ....|.|.-|.+ +..|+... -.||+|.+.+...++.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccChhhee
Confidence 45999999998884 566899986663 34555422 3899999998876653
No 93
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.81 E-value=0.39 Score=38.75 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=36.0
Q ss_pred eecCCCCccceeccc--cCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCee
Q 007048 329 NLRCPMSGSRIRVAG--RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 329 SL~CPls~~ri~~P~--Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 384 (620)
.+.|||-+..+..|. +...|.|.-|++ +..|+. + ...||+|.+.+...++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE---Q--HDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT---T--TCSCTTTCCCCCCSCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH---c--CCcCcCcCCccCCcccC
Confidence 467999988887554 335799987765 445553 2 25899999998776654
No 94
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=84.71 E-value=0.55 Score=36.72 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=34.1
Q ss_pred ecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCC
Q 007048 330 LRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 330 L~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
..||+-+..+..|++...|.|.-|++ +..|+.. ...||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-----SCSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-----cCcCcCCChhhH
Confidence 45999999998888888899997765 3445532 258999998874
No 95
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.48 E-value=0.66 Score=37.95 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=36.9
Q ss_pred eecCCCCccceec----cccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCC
Q 007048 329 NLRCPMSGSRIRV----AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLED 382 (620)
Q Consensus 329 SL~CPls~~ri~~----P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~ 382 (620)
.+.|||-+..+.. |+.. .|.|.-|.+ +..|+.. ......||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLAS--SINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHH--CSSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHc--CCCCcCCCCCCCcccchh
Confidence 4679999999887 6554 799987764 3445432 234689999999887654
No 96
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=82.12 E-value=0.67 Score=40.81 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=31.3
Q ss_pred CCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 94 ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 94 ~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
..|++|.. |+.|.|..|+.++...+ --...+..|.|+.|+..
T Consensus 73 ~~m~~C~~--C~~~~H~~C~~~~~~~~-~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECCI--CNEIVHPGCLQMDGEGL-LNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEETT--TCCEECGGGCCSCCCCE-ECSSSSSEEECTTTC--
T ss_pred cceEEeee--cCCeEECCCCCCCcccc-ccccCCCCeECCCCcCC
Confidence 35999999 99999999999865321 11346778999999865
No 97
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.52 E-value=0.29 Score=39.01 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=33.5
Q ss_pred eecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCC
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE 381 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~ 381 (620)
.+.|||-+..++.|+.. .|.|.-|.+ -+..... ....||+|.+.+...
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~--~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYL--CVKGASW--LGKRCALCRQEIPED 62 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHH--HHHHCTT--CSSBCSSSCCBCCHH
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHH--HHHHHHH--CCCcCcCcCchhCHh
Confidence 45799999999999776 699996643 2222212 236899999887543
No 98
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.21 E-value=0.66 Score=37.21 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=32.8
Q ss_pred ecCCCCccceecc--ccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCC
Q 007048 330 LRCPMSGSRIRVA--GRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLE 381 (620)
Q Consensus 330 L~CPls~~ri~~P--~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~ 381 (620)
..|||-+..+..+ ++...|.|.-|.+ +..||..+ ..||+|.+.+...
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGPS 73 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCCC
Confidence 4588888877766 4555699987665 45566432 4899999887653
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.65 E-value=1.2 Score=39.31 Aligned_cols=44 Identities=20% Similarity=0.551 Sum_probs=32.6
Q ss_pred CCCC-CCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccc
Q 007048 87 CGTS-LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (620)
Q Consensus 87 Cg~s-l~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL 137 (620)
|+.. ...+.|+.|+. |..+.|..|+..+. ..+|+ ..|+|+.|+.
T Consensus 67 C~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~l---~~~P~--~~W~C~~C~~ 111 (112)
T 3v43_A 67 CRDQGKNADNMLFCDS--CDRGFHMECCDPPL---TRMPK--GMWICQICRP 111 (112)
T ss_dssp TCCCCCTTCCCEECTT--TCCEECGGGCSSCC---SSCCS--SCCCCTTTSC
T ss_pred ccCcCCCccceEEcCC--CCCeeecccCCCCC---CCCCC--CCeECCCCCC
Confidence 5643 33468999999 99999999987543 23343 4799999985
No 100
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.53 E-value=0.82 Score=34.93 Aligned_cols=46 Identities=30% Similarity=0.605 Sum_probs=32.6
Q ss_pred eecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCCC
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLED 382 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 382 (620)
.|.|||-+..+..|+. ..|.|.-|.+-.. ....+||+|.+.+....
T Consensus 6 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~-------~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKL-LPCLHTLCSGCLE-------ASGMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSCSSSCSSCBCCSC-STTSCCSBTTTCS-------SSSSSCSSCCSSSSCCS
T ss_pred CCCceEeCCccCCeEE-cCCCCcccHHHHc-------cCCCCCCcCCcEeecCC
Confidence 3569999999998855 5699976654311 13568999999886543
No 101
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.46 E-value=1.2 Score=33.22 Aligned_cols=43 Identities=23% Similarity=0.551 Sum_probs=29.3
Q ss_pred cCCCCccceec---cccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCC
Q 007048 331 RCPMSGSRIRV---AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY 378 (620)
Q Consensus 331 ~CPls~~ri~~---P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~ 378 (620)
.|||-+..+.. +.+...|.|.-|.+ +..|+... ..||+|.+.+
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 53 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPS 53 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSS
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 47877777654 35556799986665 34555433 7899999876
No 102
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.30 E-value=0.97 Score=34.84 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=34.4
Q ss_pred eEEeecCCCCccceeccccCCCcCcccccC-HHHHHHHHcCCCeeeccCC
Q 007048 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPIC 374 (620)
Q Consensus 326 ~~VSL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC 374 (620)
+.-.+.|||-+..+.-|+.- .|.|.-|.+ +..|+.. .....+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 45568899999999999887 899997663 3444432 3356789998
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.74 E-value=1.1 Score=37.97 Aligned_cols=51 Identities=16% Similarity=0.398 Sum_probs=35.5
Q ss_pred cCCCCC--CCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 86 PCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 86 iCg~sl--~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
+|+..- ..+.||.|+. |....|..|+..+.... .+......|+|..|+...
T Consensus 21 vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~-~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 21 VCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDK-EVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp SSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHH-HHHCTTCCCCCHHHHHHH
T ss_pred CCCCCCCCCCCceEECCC--CCCeEcCccCCCccccc-ccCCCCCCeeCccccchh
Confidence 476542 2478999999 99999999998764310 001124689999998753
No 104
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=78.09 E-value=1.4 Score=40.41 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=31.3
Q ss_pred hhHHHHHHHcCCCCCCchHHHHHHHHHhcChhH
Q 007048 2 KELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG 34 (620)
Q Consensus 2 ~ELq~~L~~~g~~K~GkK~eL~~R~l~ll~~~~ 34 (620)
.+|.+++.-|+++++|.|.||++||++-|..+.
T Consensus 78 ~~L~~~c~iL~l~~~g~keelv~ril~FL~~P~ 110 (131)
T 2jx3_A 78 AMLKSICEVLDLERSGVNSELVKRILNFLMHPK 110 (131)
T ss_dssp HHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCcc
Confidence 579999999999999999999999999999887
No 105
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.97 E-value=1.7 Score=41.32 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=33.2
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
+|+. .|.++.|+. |..+.|..|+..+.. .+| ...|+|+.|+-..
T Consensus 9 ~C~~---~g~ll~Cd~--C~~~~H~~C~~p~l~---~~p--~~~W~C~~C~~~~ 52 (184)
T 3o36_A 9 VCQN---GGELLCCEK--CPKVFHLSCHVPTLT---NFP--SGEWICTFCRDLS 52 (184)
T ss_dssp TTCC---CSSCEECSS--SSCEECTTTSSSCCS---SCC--SSCCCCTTTSCSS
T ss_pred cCCC---CCeeeecCC--CCcccCccccCCCCC---CCC--CCCEECccccCcc
Confidence 3773 367999999 999999999875432 333 3579999999753
No 106
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.90 E-value=2.4 Score=31.68 Aligned_cols=44 Identities=20% Similarity=0.471 Sum_probs=31.4
Q ss_pred EeecCCCCccceeccccCCCcCcccccCHHHHHHHHc-CCCeeeccCC
Q 007048 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQ-RTRKWQCPIC 374 (620)
Q Consensus 328 VSL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC 374 (620)
-.+.|||-+..++-|+. ..|.|.-|. .=+..... ......||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~--~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI-IECGHNFCK--ACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCC-CSSCCCCCH--HHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEe-CCCCCccCH--HHHHHHHHhcCCCCCCCCC
Confidence 45789999999999977 579999554 33333322 2356799998
No 107
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=75.69 E-value=1.3 Score=42.92 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=33.1
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCccccccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~ 139 (620)
+|+. .+.++.|+. |..+.|..|+..+.. .+| ...|+|+.|+...
T Consensus 12 ~C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 12 VCQN---GGDLLCCEK--CPKVFHLTCHVPTLL---SFP--SGDWICTFCRDIG 55 (207)
T ss_dssp TTCC---CEEEEECSS--SSCEECTTTSSSCCS---SCC--SSCCCCTTTSCSS
T ss_pred CCCC---CCceEEcCC--CCCccCCccCCCCCC---CCC--CCCEEeCceeCcc
Confidence 3763 356999999 999999999975432 233 3579999999753
No 108
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=75.51 E-value=1.4 Score=38.47 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=36.8
Q ss_pred eecCCCCccceeccc------cCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCee
Q 007048 329 NLRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 329 SL~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 384 (620)
.+.|||-+..++-|+ ....|.|.=|.+ +..||. . .-.||+|.+.+...++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---N--ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---T--CSBCTTTCCBCTTTCEE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---h--CCCCCCCCCcCcccccc
Confidence 367999999999883 566899986654 445543 2 23999999998766543
No 109
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=74.71 E-value=3.4 Score=34.05 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=34.4
Q ss_pred eecCCCCccceecc-ccCCC--cCcccccCHHHHHHHHcCCCeeeccCCCCCCCCCCe
Q 007048 329 NLRCPMSGSRIRVA-GRFKP--CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDL 383 (620)
Q Consensus 329 SL~CPls~~ri~~P-~Rg~~--C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L 383 (620)
.+.|||-...+.++ .+... |.|.-|.+- +..+.. .....||+|.+.+....+
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~C--l~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFC--WHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHH--HHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHH--HHHHHh-cCCCCCCCCCCccCCCch
Confidence 35699999988653 33333 999866543 333322 246899999999876654
No 110
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=72.73 E-value=2.1 Score=31.80 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=27.8
Q ss_pred cCCCCccceec---cccCCCcCcccccCH-HHHHHHHcCCCeeeccCCCCCCC
Q 007048 331 RCPMSGSRIRV---AGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 331 ~CPls~~ri~~---P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
.|||-+..+.. +..-..|.|.-|.+- ..|+ + ....||+|.+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~---~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL---G--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT---T--TCCSCSSSCCCSC
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHHHHHH---H--cCCcCcCCCCEeE
Confidence 47877777765 444446999855542 3333 2 2458999998764
No 111
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.93 E-value=2.3 Score=33.66 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=31.7
Q ss_pred eecCCCCccceeccccCC--CcCcccccC-HHHHHHHHcCCCeeeccCCCCCCC
Q 007048 329 NLRCPMSGSRIRVAGRFK--PCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~--~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
...|||-+..+..|.... .|.|.-|++ +..|+..+ ..||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 456999988887665442 799986654 44555432 28999998763
No 112
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.74 E-value=1.8 Score=33.52 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=32.8
Q ss_pred eecCCCCccceeccc------cCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCC
Q 007048 329 NLRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 329 SL~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
.+.|||-+..+..|. ....|.|.-|.+ +..|+.. .-.||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 467999999998874 446899986654 3344432 348999998874
No 113
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=67.21 E-value=3.3 Score=32.26 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=30.3
Q ss_pred eecCCCCcccee--ccccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCC
Q 007048 329 NLRCPMSGSRIR--VAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 380 (620)
Q Consensus 329 SL~CPls~~ri~--~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 380 (620)
...|||-+..+. .+++...|.|.-|++ +..|+.. ...||+|.+.+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-----NKKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-----CSBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-----CCCCcCcCccccC
Confidence 346888877664 334556799986654 3445543 2359999987754
No 114
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=65.90 E-value=1.5 Score=35.39 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=30.7
Q ss_pred eecCCCCccceeccccCCCcCcc-cccCHHHHHHHHcCCCeeeccCCCCCCC
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
.+.||+-+..+.-|+-- .|.|. -|++-..-+ .+||+|.+.+.
T Consensus 24 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV--------DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC--------SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC--------ccCCCcCcCcc
Confidence 35699999888877754 79998 666543211 89999998764
No 115
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.28 E-value=2.9 Score=33.66 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=32.5
Q ss_pred EeecCCCCccceeccccCCCcCcc-cccCHHHHHHHHcCCCeeeccCCCCCCCC
Q 007048 328 VNLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYSL 380 (620)
Q Consensus 328 VSL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 380 (620)
-.+.|||-+..++-|+. ..|.|. -|.+-.. ...+||+|.+.+.-
T Consensus 24 ~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 35679999999888876 579998 6655431 12789999987743
No 116
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=64.75 E-value=2.8 Score=36.06 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=32.6
Q ss_pred cCCCCccceeccc-----------------cCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCC
Q 007048 331 RCPMSGSRIRVAG-----------------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNY 378 (620)
Q Consensus 331 ~CPls~~ri~~P~-----------------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~ 378 (620)
.|||-+..+..|. +-..|.|.-|++ +..||....+...-.||+|.+.+
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 4888888776554 245799985553 55666544435567999999776
No 117
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=64.32 E-value=3.6 Score=39.48 Aligned_cols=42 Identities=17% Similarity=0.532 Sum_probs=31.8
Q ss_pred CCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccc
Q 007048 87 CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (620)
Q Consensus 87 Cg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~ 138 (620)
|+. .+.++.|+. |....|..|+..+.. .+| ...|+|+.|+..
T Consensus 8 C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 8 CQK---PGDLVMCNQ--CEFCFHLDCHLPALQ---DVP--GEEWSCSLCHVL 49 (189)
T ss_dssp TCC---CSSCCCCTT--TCCBCCSTTSTTCCS---SCC--CTTCCTTTTSCS
T ss_pred CCC---CCceeECCC--CCchhccccCCCCcc---cCC--CCCCCCcCccCC
Confidence 663 356999999 999999999965432 223 367999999975
No 118
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=64.20 E-value=7.4 Score=33.81 Aligned_cols=44 Identities=20% Similarity=0.457 Sum_probs=33.2
Q ss_pred cCCCCCCCCCeeeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 007048 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (620)
Q Consensus 86 iCg~sl~~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CR 136 (620)
+|+..-....||.|.. |....|..|+.+...++ ....|+|+.|+
T Consensus 12 ~C~~~g~~~~ll~C~~--C~~~~H~~Cl~~~~~~~-----~~~~W~C~~C~ 55 (111)
T 2ysm_A 12 VCDSPGDLLDQFFCTT--CGQHYHGMCLDIAVTPL-----KRAGWQCPECK 55 (111)
T ss_dssp TTCCCCCTTTSEECSS--SCCEECTTTTTCCCCTT-----TSTTCCCTTTC
T ss_pred CCCCCCCCcCCeECCC--CCCCcChHHhCCccccc-----cccCccCCcCC
Confidence 3776654467899998 99999999999875431 23578888876
No 119
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.97 E-value=7.1 Score=30.16 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=25.5
Q ss_pred hhHHHHHHHcCCCCCCchHHHHHHHHHh
Q 007048 2 KELKDVLTKLGLPKQGKKQDLVDRIFHQ 29 (620)
Q Consensus 2 ~ELq~~L~~~g~~K~GkK~eL~~R~l~l 29 (620)
.|||--|..+|-+-+|...||++|+-..
T Consensus 14 ~ELQaKLaE~GAPi~g~REElvdRLk~Y 41 (58)
T 2do5_A 14 QELQAKLAEIGAPIQGNREELVERLQSY 41 (58)
T ss_dssp HHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccccHHHHHHHHHHH
Confidence 4999999999999999999999998654
No 120
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=60.01 E-value=3.1 Score=32.59 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=29.5
Q ss_pred cCCCCccceecccc-CCCcCcc-cccCHHHHHHHHcCCCeeeccCCCCCC
Q 007048 331 RCPMSGSRIRVAGR-FKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNY 378 (620)
Q Consensus 331 ~CPls~~ri~~P~R-g~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~ 378 (620)
.|++-+.+.+-++= ...|.|+ -|.+-..-+. ++ .++||+|.+++
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~~--~~~CPiCR~~i 54 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK--KA--GASCPICKKEI 54 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH--HT--TCBCTTTCCBC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH--Hh--CCcCCCcCchh
Confidence 48888877665542 2379998 5776555443 22 37999999887
No 121
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.87 E-value=3.7 Score=33.63 Aligned_cols=32 Identities=19% Similarity=0.578 Sum_probs=19.9
Q ss_pred CcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCe
Q 007048 347 PCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDL 383 (620)
Q Consensus 347 ~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L 383 (620)
.|.|.-+++ +..||.. . -.||+|.+.+.+.++
T Consensus 47 ~C~H~FH~~Ci~~Wl~~---~--~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQ---N--NRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTSCEEEHHHHHHHTTT---C--CBCTTTCCBCCEEEE
T ss_pred CCCCccChHHHHHHHHh---C--CCCCCcCCCcchhhc
Confidence 599984332 3444432 2 289999998866543
No 122
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=56.74 E-value=4.5 Score=31.72 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=30.0
Q ss_pred cCCCCccceeccccC-CCcCcc-cccCHHHHHHHHcCCCeeeccCCCCCCC
Q 007048 331 RCPMSGSRIRVAGRF-KPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 331 ~CPls~~ri~~P~Rg-~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
.|++-+.+.+.++-- ..|.|+ -|++-..-+. . ..+.||+|.+.+.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK--K--RNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH--H--TTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH--H--cCCcCCCcCcchh
Confidence 488888877766532 379999 4665444332 2 2478999998873
No 123
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=55.93 E-value=3.3 Score=35.99 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.4
Q ss_pred ecCCCCccceeccc------cCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCCCCee
Q 007048 330 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (620)
Q Consensus 330 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 384 (620)
+.||+-...++-|. ....|.|.-|++ +..||.. ...||+|.+.+..++|+
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----CCCCCCCCCcCChhcce
Confidence 45888888877663 345799998775 5566653 24899999998877664
No 124
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.27 E-value=1.9 Score=33.85 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=31.5
Q ss_pred eecCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCC
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE 381 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~ 381 (620)
.+.|||-+..+.. ....|.|.-|. .-+..... ....||+|.+.+...
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~--~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQ--KCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECH--HHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccH--HHHHHHHH--CcCcCCCcCCcccCC
Confidence 5679998888776 55679998543 33322212 467899999877543
No 125
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=50.64 E-value=7.8 Score=32.22 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=28.6
Q ss_pred eecCCCCccceec--cccCCCcCcccccC-HHHHHHHHcCCCeeeccCCCCCCCC
Q 007048 329 NLRCPMSGSRIRV--AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 380 (620)
Q Consensus 329 SL~CPls~~ri~~--P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 380 (620)
...|||-+..+.. ..+...|.|.-|++ +..||. + .-.||+|.+.+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ---K--SGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT---T--TCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH---c--CCcCcCcCccCCC
Confidence 3458888766654 23334599975553 344552 2 2389999988754
No 126
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=49.32 E-value=4.7 Score=42.38 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=33.5
Q ss_pred EEeecCCCCccceeccccCCCcCcc-cccCHHHHHHHHcCCCeeeccCCCCCCC
Q 007048 327 IVNLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 327 ~VSL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
.-.+.||+-+..+.-|+.- .|.|. -|..-..-+ +.||+|...+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~--------~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL--------RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC--------SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC--------CcCCCCCCCcc
Confidence 3357899999999888775 79998 666544311 79999998864
No 127
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=48.78 E-value=4.3 Score=33.31 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=28.7
Q ss_pred ecCCCCccceeccccCCCcCcc-cccCHHHHHHHHcCCCeeeccCCCCCCC
Q 007048 330 LRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 330 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
+.|++-+....-|+- ..|.|+ -|.+-.. ..|.||+|.+.+.
T Consensus 19 ~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCC
T ss_pred CEeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhh
Confidence 358888887776654 479998 5665432 2279999998874
No 128
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.82 E-value=10 Score=30.14 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=27.3
Q ss_pred ecCCCCccceeccccCCCcCcc-cccCHHHHHHHHcCCCeeeccCCCCCCC
Q 007048 330 LRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (620)
Q Consensus 330 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 379 (620)
..|++-+.+.+.++ ...|.|+ -|.+-.. ..++||+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVNWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCCCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCcCcCCCCEE-EECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 45888777655432 3568888 5665544 1389999998774
No 129
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=46.55 E-value=2.4 Score=33.61 Aligned_cols=15 Identities=27% Similarity=1.001 Sum_probs=11.6
Q ss_pred HcCCCeeeccCCCCC
Q 007048 363 NQRTRKWQCPICMKN 377 (620)
Q Consensus 363 n~~~~~W~CPiC~k~ 377 (620)
....++|+||+|...
T Consensus 28 ~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 28 DYRAKLWACNFCYQR 42 (59)
T ss_dssp EGGGTEEECSSSCCE
T ss_pred ECCCCEEEcccCCCc
Confidence 345679999999854
No 130
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=45.08 E-value=7.1 Score=26.10 Aligned_cols=16 Identities=44% Similarity=0.574 Sum_probs=12.2
Q ss_pred CCCCCcEEEecCCCcC
Q 007048 544 LIGDTDIIVLSDSEED 559 (620)
Q Consensus 544 ~~~~~~~~~lsds~~~ 559 (620)
+..--+|||||||+..
T Consensus 9 qcdP~evivlsds~~~ 24 (26)
T 2kqs_B 9 QCDPEEIIVLSDSDXX 24 (26)
T ss_pred cCCcceEEEccccccc
Confidence 4455689999999864
No 131
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=44.94 E-value=4.7 Score=35.40 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=28.7
Q ss_pred CCCeeeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 007048 93 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (620)
Q Consensus 93 ~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CR 136 (620)
.+.||.|.. |....|..|+.+..+..+.+ ....|+|+.|+
T Consensus 23 ~~~Ll~C~~--C~~~~H~~Cl~~~~~~~~~~--~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCAD--CGNSGHPSCLKFSPELTVRV--KALRWQCIECK 62 (112)
T ss_dssp CCCCEECTT--TCCEECHHHHTCCHHHHHHH--HTSCCCCTTTC
T ss_pred chhceEhhh--cCCCCCCchhcCCHHHHHHh--hccccccccCC
Confidence 468999999 99999999998642211122 23578888887
No 132
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=39.27 E-value=9.1 Score=31.90 Aligned_cols=10 Identities=60% Similarity=1.713 Sum_probs=8.8
Q ss_pred CCeeeccCCC
Q 007048 366 TRKWQCPICM 375 (620)
Q Consensus 366 ~~~W~CPiC~ 375 (620)
..+|.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 4689999998
No 133
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.21 E-value=8.2 Score=29.14 Aligned_cols=12 Identities=33% Similarity=1.151 Sum_probs=9.4
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 446999999854
No 134
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=36.59 E-value=22 Score=35.95 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=26.2
Q ss_pred hhHHHHHHHcCCCCCCchHHHHHHHHHh
Q 007048 2 KELKDVLTKLGLPKQGKKQDLVDRIFHQ 29 (620)
Q Consensus 2 ~ELq~~L~~~g~~K~GkK~eL~~R~l~l 29 (620)
+-||.|....|++.+|.|.+|++|+.+.
T Consensus 7 ~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 7 SFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp HHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 5799999999999999999999999885
No 135
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=36.28 E-value=13 Score=39.83 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=35.3
Q ss_pred eecCCCCccceeccccCCCcCcccccCH-HHHHHHHcCCCeeeccCCCCCCCCCC
Q 007048 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLED 382 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~ 382 (620)
.+.|||....+.-|+. ..|.|.-|.+- ..|+.. ..-.||+|.+.+....
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCce
Confidence 3789999999988866 57999877643 344432 3458999998886543
No 136
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=34.84 E-value=22 Score=32.26 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.3
Q ss_pred ChhHHHHHHHcCCCCCC--chHHHHHHHHHh
Q 007048 1 MKELKDVLTKLGLPKQG--KKQDLVDRIFHQ 29 (620)
Q Consensus 1 i~ELq~~L~~~g~~K~G--kK~eL~~R~l~l 29 (620)
++||+++...+|+.... +|+||+.++|.-
T Consensus 11 ~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~ 41 (130)
T 1a62_A 11 VSELITLGENMGLENLARMRKQDIIFAILKQ 41 (130)
T ss_dssp HHHHHHHHHTTTCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccCHHHHHHHHHHH
Confidence 47999999999999887 999999888763
No 137
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=33.89 E-value=16 Score=32.11 Aligned_cols=45 Identities=33% Similarity=0.636 Sum_probs=33.8
Q ss_pred cCCCCccceeccccCCCcCcccccCHHHHHHHHcCCCeeeccCCCCCC
Q 007048 331 RCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNY 378 (620)
Q Consensus 331 ~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~ 378 (620)
.|+.-...|++=+|-..|+|.-|+|-..-... ...=.||.|+.++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~---~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK---KGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh---ccCCCCcCcCCee
Confidence 37888888999999999999988887654422 2334799998665
No 138
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.30 E-value=8.1 Score=32.22 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=38.1
Q ss_pred eecCCCCccceeccccC--CCcCcccccC-HHHHHHHH--cC-CCeeeccC--CCCC--CCCC
Q 007048 329 NLRCPMSGSRIRVAGRF--KPCVHTGCFD-LETFVELN--QR-TRKWQCPI--CMKN--YSLE 381 (620)
Q Consensus 329 SL~CPls~~ri~~P~Rg--~~C~HlQCFD-l~~fL~~n--~~-~~~W~CPi--C~k~--~~~~ 381 (620)
.+.|||-+..+..|.-. ..|.|.-|.+ +..|+... +. ....+||. |... +.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 35699999888777543 3699998875 67888764 22 24689999 9988 5543
No 139
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.47 E-value=15 Score=28.35 Aligned_cols=12 Identities=33% Similarity=1.248 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 457999999864
No 140
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.46 E-value=13 Score=28.99 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=9.5
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 457999999854
No 141
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.37 E-value=14 Score=28.73 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.6
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 142
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=30.01 E-value=14 Score=28.43 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=9.6
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 143
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.90 E-value=16 Score=30.75 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=9.4
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 58 PddW~CPvCga~ 69 (81)
T 2kn9_A 58 PDDWSCPDCGAA 69 (81)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 347999999864
No 144
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.28 E-value=6.7 Score=33.26 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=13.2
Q ss_pred eeccCCCCCCCCCCee
Q 007048 369 WQCPICMKNYSLEDLI 384 (620)
Q Consensus 369 W~CPiC~k~~~~~~L~ 384 (620)
-+||+|++.+...+|+
T Consensus 9 ~~~PlCG~~L~W~eLI 24 (95)
T 2k5c_A 9 AKCPICGSPLKWEELI 24 (95)
T ss_dssp EECSSSCCEECHHHHH
T ss_pred ccCCcCCCccCHHHHH
Confidence 6899999998877654
No 145
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=27.99 E-value=16 Score=29.84 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=9.6
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 146
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.95 E-value=12 Score=32.94 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=27.8
Q ss_pred CCCeeeecCccccccccccccccCCCCcccccCCCCcccccccc
Q 007048 93 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (620)
Q Consensus 93 ~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CR 136 (620)
.+.+|.|.. |....|..|+.+..+.++.++ ...|+|+.|+
T Consensus 20 ~~~Li~C~~--C~~~~H~~Cl~~~~~~~~~~~--~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCAD--CGRSGHPTCLQFTLNMTEAVK--TYKWQCIECK 59 (114)
T ss_dssp CCCCEECSS--SCCEECTTTTTCCHHHHHHHH--HTTCCCGGGC
T ss_pred CCCCeEeCC--CCCccchhhCCChhhhhhccC--CCccCccccC
Confidence 468999999 999999999987642211221 2357777764
No 147
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=25.34 E-value=58 Score=26.45 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=26.1
Q ss_pred CCCeeeecCccccccccccccccCCCCcccccCCCCcccccccccccCCChh
Q 007048 93 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFW 144 (620)
Q Consensus 93 ~~~mIqC~~~~C~v~qH~~Cv~i~~kp~~~~p~~P~~fyCe~CRL~~~DPF~ 144 (620)
....|||+.+.|.+|--..=-. .. ...|+.++|.+ ..||.+
T Consensus 15 ~~~WVQCd~p~C~KWR~LP~~~-~~------~~lpd~W~C~m----N~d~~~ 55 (69)
T 2e61_A 15 CLVWVQCSFPNCGKWRRLCGNI-DP------SVLPDNWSCDQ----NTDVQY 55 (69)
T ss_dssp CCCEEECSSTTTCCEEECCSSC-CT------TTSCTTCCGGG----CSCGGG
T ss_pred CCeEEEeCccccCcccCCcccc-cc------ccCCCcCEeCC----CCCCcc
Confidence 4579999977799998542211 11 23688999964 235555
No 148
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=25.14 E-value=29 Score=30.15 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=17.7
Q ss_pred CCcCcccccCHHHHHHHHcCCCeeeccCCCCCCCC
Q 007048 346 KPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSL 380 (620)
Q Consensus 346 ~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~ 380 (620)
..|.|. |-..=...--.+ .-.||+|.+...+
T Consensus 71 ~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 71 GVCNHA--FHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp ETTSCE--EEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred cccCcE--ECHHHHHHHHHc--CCcCcCCCCccee
Confidence 468887 433333222222 3579999988654
No 149
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.99 E-value=22 Score=24.15 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=10.1
Q ss_pred CCeeeccCCCCCC
Q 007048 366 TRKWQCPICMKNY 378 (620)
Q Consensus 366 ~~~W~CPiC~k~~ 378 (620)
++++.||+|...+
T Consensus 1 ~~k~~CpvCk~q~ 13 (28)
T 2jvx_A 1 SSDFCCPKCQYQA 13 (28)
T ss_dssp CCCEECTTSSCEE
T ss_pred CCcccCccccccC
Confidence 3679999998654
No 150
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.50 E-value=22 Score=30.30 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=9.6
Q ss_pred CCeeeccCCCCC
Q 007048 366 TRKWQCPICMKN 377 (620)
Q Consensus 366 ~~~W~CPiC~k~ 377 (620)
...|.||+|+..
T Consensus 66 PddW~CPvCga~ 77 (87)
T 1s24_A 66 PDDWCCPDCGAT 77 (87)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCCCCCCCCC
Confidence 457999999864
No 151
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.29 E-value=30 Score=20.45 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.4
Q ss_pred eeeccCCCCCCCC
Q 007048 368 KWQCPICMKNYSL 380 (620)
Q Consensus 368 ~W~CPiC~k~~~~ 380 (620)
.|.|+.|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 4889999988754
No 152
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.92 E-value=25 Score=21.00 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=10.3
Q ss_pred CeeeccCCCCCCC
Q 007048 367 RKWQCPICMKNYS 379 (620)
Q Consensus 367 ~~W~CPiC~k~~~ 379 (620)
..|.|++|++.+.
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 3589999998764
No 153
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.63 E-value=31 Score=22.23 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=11.3
Q ss_pred CeeeccCCCCCCCC
Q 007048 367 RKWQCPICMKNYSL 380 (620)
Q Consensus 367 ~~W~CPiC~k~~~~ 380 (620)
..++|++|++.+.-
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 46999999988753
No 154
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.08 E-value=32 Score=20.49 Aligned_cols=13 Identities=15% Similarity=0.861 Sum_probs=10.2
Q ss_pred eeeccCCCCCCCC
Q 007048 368 KWQCPICMKNYSL 380 (620)
Q Consensus 368 ~W~CPiC~k~~~~ 380 (620)
.+.|++|++.+.-
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4899999987643
No 155
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.71 E-value=36 Score=20.25 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.4
Q ss_pred eeeccCCCCCCCC
Q 007048 368 KWQCPICMKNYSL 380 (620)
Q Consensus 368 ~W~CPiC~k~~~~ 380 (620)
.++|++|++.+.-
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4799999988754
No 156
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=21.29 E-value=28 Score=23.20 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=10.4
Q ss_pred cccCCCCCCcccc
Q 007048 601 DGPFSFPRQPRSV 613 (620)
Q Consensus 601 ~~~~~~~~~~~~~ 613 (620)
++||+||-||-.-
T Consensus 6 ~~P~~~Pg~~~an 18 (26)
T 2pv9_C 6 PNPRGYPGKFCAN 18 (26)
T ss_dssp CEECSCTTTTCSC
T ss_pred CCCccCCCCccCC
Confidence 6899999998543
No 157
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=51 Score=27.05 Aligned_cols=39 Identities=15% Similarity=0.478 Sum_probs=25.5
Q ss_pred ceeccccCC---CcCcccccCHHHHHHHHcCCCeeeccCCCCCCCCC
Q 007048 338 RIRVAGRFK---PCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE 381 (620)
Q Consensus 338 ri~~P~Rg~---~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~ 381 (620)
.+..|++-. +--|..|. +.||... .+..||+|...+.++
T Consensus 30 ~l~~pC~C~Gs~h~fH~~Cl--~~Wl~~~---~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 30 PLITPCHCTGSLHFVHQACL--QQWIKSS---DTRCCELCKYEFIME 71 (80)
T ss_dssp CEECSSSCCSSSCCEETTHH--HHHHHHH---CCSBCSSSCCBCCCC
T ss_pred eeEeccccCCcCCeeCHHHH--HHHHhhC---CCCCCCCCCCeeecC
Confidence 445677633 55677675 4666554 357899999887654
Done!