BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007049
         (620 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JS8|A Chain A, Solvent-Stable Cholesterol Oxidase
          Length = 540

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 452 PVEVKEQRLSNLLQSTMVGGCVAAMPLLKRIPTSVLWGYFAFMAIESLPG----NQFWER 507
           PVE++   L +  ++ + GG   A+  ++  P    W    ++ I +LPG    NQF+  
Sbjct: 399 PVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGTPYANQFYRE 458

Query: 508 I 508
           I
Sbjct: 459 I 459


>pdb|1YTZ|I Chain I, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
           Activated State
          Length = 182

 Score = 30.4 bits (67), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 369 ATLKHQLLRNRLVETAHKCISNNASLGQVYGSMQEAYQQMQSPLIYQESSAQGLKEL-KE 427
           AT + Q L++ +++ A   I   A+  +V    ++ Y    SP +    S Q L+EL K+
Sbjct: 10  ATARRQHLKSAMLQLAVTEIEKEAAAKEV---EKQNYLAEHSPPLSLPGSMQELQELSKK 66

Query: 428 SRIQMDAPVDENAFDIE-------KEIDDL 450
              ++D+ VDE  +D E       KE++DL
Sbjct: 67  LHAKIDS-VDEERYDTEVKLQKTNKELEDL 95


>pdb|1YV0|I Chain I, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
           Free State
          Length = 137

 Score = 30.4 bits (67), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 369 ATLKHQLLRNRLVETAHKCISNNASLGQVYGSMQEAYQQMQSPLIYQESSAQGLKEL-KE 427
           AT + Q L++ +++ A   I   A+  +V    ++ Y    SP +    S Q L+EL K+
Sbjct: 10  ATARRQHLKSAMLQLAVTEIEKEAAAKEV---EKQNYLAEHSPPLSLPGSMQELQELSKK 66

Query: 428 SRIQMDAPVDENAFDIE-------KEIDDL 450
              ++D+ VDE  +D E       KE++DL
Sbjct: 67  LHAKIDS-VDEERYDTEVKLQKTNKELEDL 95


>pdb|2W49|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W4U|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
          Length = 141

 Score = 30.4 bits (67), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 369 ATLKHQLLRNRLVETAHKCISNNASLGQVYGSMQEAYQQMQSPLIYQESSAQGLKEL-KE 427
           AT + Q L++ +++ A   I   A+  +V    ++ Y    SP +    S Q L+EL K+
Sbjct: 8   ATARRQHLKSAMLQLAVTEIEKEAAAKEV---EKQNYLAEHSPPLSLPGSMQELQELSKK 64

Query: 428 SRIQMDAPVDENAFDIE-------KEIDDL 450
              ++D+ VDE  +D E       KE++DL
Sbjct: 65  LHAKIDS-VDEERYDTEVKLQKTIKELEDL 93


>pdb|1EZS|A Chain A, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
           D70a Bound To Rat Anionic Trypsin Ii
 pdb|1EZS|B Chain B, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
           D70a Bound To Rat Anionic Trypsin Ii
          Length = 142

 Score = 30.0 bits (66), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%)

Query: 420 QGLKELKESRIQMDAPVDENAFDIEKEIDDLLPVEVKEQRLSNLLQSTMVGGCVAAMPLL 479
           Q  K +K   IQ+    DE+   +E  I   L V+    RL   L++  + G  AA  + 
Sbjct: 15  QAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLENKTLEGAAAAYYVF 74

Query: 480 KRIPTSV 486
            ++ + V
Sbjct: 75  DKVSSPV 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,701,578
Number of Sequences: 62578
Number of extensions: 710173
Number of successful extensions: 1855
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1853
Number of HSP's gapped (non-prelim): 6
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)