Query 007049
Match_columns 620
No_of_seqs 120 out of 550
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bzk_A Protein (BAND 3 anion t 99.7 1.2E-19 4.2E-24 136.4 -0.3 43 17-61 1-43 (43)
2 1bnx_A Protein (BAND 3); human 99.5 2E-15 6.7E-20 107.9 0.9 34 17-61 1-34 (34)
3 1btq_A BAND 3 anion transport 98.9 3E-10 1E-14 76.5 0.8 26 35-60 1-26 (26)
4 1bh7_A BAND 3; membrane protei 98.9 8E-11 2.7E-15 83.7 -2.3 33 502-540 1-33 (33)
5 1bts_A BAND 3 anion transport 98.8 1.4E-09 4.9E-14 73.3 2.5 26 66-91 1-26 (26)
6 3qe7_A Uracil permease; uracil 97.6 0.0013 4.4E-08 71.4 17.7 253 39-354 24-285 (429)
7 3qe7_A Uracil permease; uracil 13.1 1.1E+03 0.037 24.9 11.1 121 37-177 228-355 (429)
8 2l8s_A Integrin alpha-1; trans 10.1 1.6E+02 0.0053 23.0 2.3 21 288-308 6-26 (54)
9 2knc_A Integrin alpha-IIB; tra 10.0 1.4E+02 0.0049 23.2 2.1 21 288-308 9-29 (54)
10 2k1a_A Integrin alpha-IIB; sin 9.7 1.6E+02 0.0056 21.7 2.2 21 288-308 7-27 (42)
No 1
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=99.74 E-value=1.2e-19 Score=136.43 Aligned_cols=43 Identities=35% Similarity=0.613 Sum_probs=40.5
Q ss_pred hhccccccccccccccCcceechhHHHHhhhhhhHHHHhcccccc
Q 007049 17 KRLKCYKQDWTGGFRAGFSILAPTTYIFFASAIPVISFGEQLDRE 61 (620)
Q Consensus 17 rR~P~Y~SD~~Dg~~~~~~~las~iflyFa~l~PaIaFG~ll~~~ 61 (620)
||+|+|+|||+||+| .||++|++||||||++||||||++|+++
T Consensus 1 rR~p~Y~SD~~dg~~--~~~laa~~fiyFa~l~PaIaFG~ll~~~ 43 (43)
T 1bzk_A 1 XRYPYYLSDITDAFS--PQVLAAVIFIYFAALSPAITFGGLLGEK 43 (43)
T ss_dssp -CCSTTHHHHTTSSC--SHHHHHHHHHHHHTSTTTTTSSCCCCCC
T ss_pred CCCcccHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 799999999999999 6999999999999999999999999874
No 2
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=99.51 E-value=2e-15 Score=107.94 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=31.6
Q ss_pred hhccccccccccccccCcceechhHHHHhhhhhhHHHHhcccccc
Q 007049 17 KRLKCYKQDWTGGFRAGFSILAPTTYIFFASAIPVISFGEQLDRE 61 (620)
Q Consensus 17 rR~P~Y~SD~~Dg~~~~~~~las~iflyFa~l~PaIaFG~ll~~~ 61 (620)
||+|+|+|||+| ++||||||++|+||||++|+++
T Consensus 1 rR~p~Y~SD~~d-----------~~fiyFa~l~PaIaFg~ll~~~ 34 (34)
T 1bnx_A 1 XRYPYYLSDITD-----------VIFIYFAALSPAITFGGLLGEK 34 (34)
T ss_dssp -CCSTTTHHHHH-----------HHHHHHHHHHHHHHSSCSSCCC
T ss_pred CCCcccHHHHHH-----------HHHHHHHHHHHHHHHHHHHccC
Confidence 799999999999 8999999999999999999874
No 3
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=98.88 E-value=3e-10 Score=76.46 Aligned_cols=26 Identities=35% Similarity=0.751 Sum_probs=24.6
Q ss_pred ceechhHHHHhhhhhhHHHHhccccc
Q 007049 35 SILAPTTYIFFASAIPVISFGEQLDR 60 (620)
Q Consensus 35 ~~las~iflyFa~l~PaIaFG~ll~~ 60 (620)
||++|++||||||++|+||||++|++
T Consensus 1 q~laa~~FlyFa~l~paIaFGgLl~~ 26 (26)
T 1btq_A 1 XVLAAVIFIYFAALSPAITFGXXXXX 26 (26)
T ss_pred ChHHHHHHHHHHHHcchhccccccCC
Confidence 68999999999999999999999975
No 4
>1bh7_A BAND 3; membrane protein, cytoplasmic loop, anion exchange protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.87 E-value=8e-11 Score=83.66 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=28.4
Q ss_pred chHHHHHHHHhcCCCcccccccCCccccccccCccchhh
Q 007049 502 NQFWERILLIFTAPSRRYKVLENYHATFVETVPFKTILV 540 (620)
Q Consensus 502 nq~~~Ri~llf~~~~~~~~~~~~p~~~yvr~Vp~~~ihl 540 (620)
+|||||++|+|||+|+ +||++|+|+||+||||+
T Consensus 1 iQ~~~Ri~L~fmp~k~------~P~~~Yvr~Vp~~r~Hl 33 (33)
T 1bh7_A 1 IQLFDRILLLFKPPKY------HPDVPYVKRVKTWRMHL 33 (33)
T ss_dssp CCCTTTTCC-CCCSSC------CCC-CCCCTTHHHHHTC
T ss_pred CcHHHHHHHHcCCccc------CCCCceEEEcceeeeeC
Confidence 5999999999999987 37889999999999995
No 5
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=98.82 E-value=1.4e-09 Score=73.28 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=20.8
Q ss_pred chhHHHHHhhhhhHHHHHHhcCccee
Q 007049 66 LTAVQTLASTALCGIIHSIIGGQPLL 91 (620)
Q Consensus 66 igv~E~lls~ai~GiifslfsGQPL~ 91 (620)
+||+|+++|++++|++|++||||||+
T Consensus 1 ~gv~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 1 XGVSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTC----
T ss_pred CchhHHHHHHHHHHHHHHHHhcccCC
Confidence 58999999999999999999999995
No 6
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=97.64 E-value=0.0013 Score=71.41 Aligned_cols=253 Identities=15% Similarity=0.115 Sum_probs=134.7
Q ss_pred hhHHHHhhhhhhHHHHhcccccccCCcchhHHHHHhhhhhHHHHHHhcCcceee-eeccchHHHHHHHHHHHhhccCCcc
Q 007049 39 PTTYIFFASAIPVISFGEQLDRETDGTLTAVQTLASTALCGIIHSIIGGQPLLI-LGVAEPTVIMYTFMFNFAKNRSDLG 117 (620)
Q Consensus 39 s~iflyFa~l~PaIaFG~ll~~~T~~~igv~E~lls~ai~GiifslfsGQPL~I-lg~TGP~lif~~~ly~~~~~~~~~~ 117 (620)
..+-||-+.+++.+..|. +....++.++++.+++++++|-|+-+ +|++.-.+ ..+....+ .+
T Consensus 24 h~lam~~~~v~~PlilGl----------~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi---~~~~~i~~-~g--- 86 (429)
T 3qe7_A 24 HLFAMFGATVLVPVLFHI----------NPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFI---SPVLLLLP-LG--- 86 (429)
T ss_dssp HHHHHHHHHHHHHHTTTS----------CHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGH---HHHHHHGG-GC---
T ss_pred HHHHHHHHHHHhHHHhCC----------CHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHH---HHHHHHHh-cC---
Confidence 355577777666554442 24579999999999999999889876 88775432 22333222 32
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHh--cc--ccchhccccchhhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccc
Q 007049 118 SKLFLAWTGWVCMWTALLLFLLAIL--GA--CSIINRFTRIAGELFGLLIAMLFMQEAIKGIVDEFRVPERENPKLIEYQ 193 (620)
Q Consensus 118 ~~~fl~~~~WvgiW~~~~~~i~aa~--~~--s~lv~~~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~~~~~~~~~~~~ 193 (620)
.+.. .=..+.++++.++++.+ .. ..+.|++..-.--.|-++|.+.-+--+++... .. . +. .+.
T Consensus 87 -~~~~---~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~--~~--~--~~-~~~-- 153 (429)
T 3qe7_A 87 -YEVA---LGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG--LL--P--AE-GQT-- 153 (429)
T ss_dssp -HHHH---HHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHT--SS--C--BT-TBC--
T ss_pred -HHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhcc--cc--C--CC-Ccc--
Confidence 1222 12345666667777766 33 35777777644444445555544444554321 00 0 00 000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhccccccccCcccccccccchhHHHHHHHHhhccccCc-ccCCCCcc-c-cCCCC
Q 007049 194 PSWRFANGMFALVLSFGLLHTALRSRKARSWRYGSGCLRGFIADYGVPLMVLVWTAVSYIPAR-SVPKGIPR-R-LFSPN 270 (620)
Q Consensus 194 ~~~~~~~~lls~iL~~gt~~~a~~l~~fr~s~f~~~~vR~~iaDfgv~iaI~~~~~~~y~~~~-~vp~~~~~-~-l~~p~ 270 (620)
.+ .-.+.+++.++.+...+.+ + .|+++.-+++.+++++.+.+.+..+. +.+. +.+ . ...|.
T Consensus 154 --~~----~~~~~la~~tl~iii~~~~-----~----~kg~~~~~aiLigivvg~~~a~~~G~~d~~~-v~~a~~~~lP~ 217 (429)
T 3qe7_A 154 --PD----SKTIIISITTLAVTVLGSV-----L----FRGFLAIIPILIGVLVGYALSFAMGIVDTTP-IINAHWFALPT 217 (429)
T ss_dssp --CC----HHHHHHHHHHHHHHHHHHH-----S----SSTTTTTHHHHHHHHHHHHHHHHHHHTTSSH-HHHSCSSCCCC
T ss_pred --cc----HHHHHHHHHHHHHHHHHHH-----H----hcccchhhHHHHHHHHHHHHHHHhcCCCccc-ccccccccccC
Confidence 00 1234555555555444322 2 23444556899999988887765432 2111 000 0 01111
Q ss_pred CCCCCCCCCceEeccCCCcchHHHHHhhhhHHhhhhheeecchhHHHHhhcc-ccCCCCCCccchhHHHHHHHHHhhhcc
Q 007049 271 PWSPGAYENWTVIKDMLNVPLLYIIGAFIPATMIAVLYYFDHSVASQLAQQK-EFNLRKPSSFHYDLLLLGLMVIICGLL 349 (620)
Q Consensus 271 ~~~p~~~r~W~v~~~~~~~p~~~i~~A~iPAlll~iLiF~D~nIts~ivn~~-e~kLkKg~gyHlDl~llgi~t~v~sll 349 (620)
|. .+ ++.+. ++++.+.+++.-++|+-=+..-+.+. +.+..|.+..|=.+..-|+-|.++|++
T Consensus 218 ---------~~--~P--~f~~~----~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glf 280 (429)
T 3qe7_A 218 ---------LY--TP--RFEWF----AILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFF 280 (429)
T ss_dssp ---------CC--CC--CCCHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CC--CC--cccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhc
Confidence 11 01 12222 23333444455556765443322222 223435667888999999999999999
Q ss_pred CCCCC
Q 007049 350 GIPPA 354 (620)
Q Consensus 350 GLPw~ 354 (620)
|-++.
T Consensus 281 Gg~p~ 285 (429)
T 3qe7_A 281 GSTPN 285 (429)
T ss_dssp TCCCE
T ss_pred CCCCc
Confidence 98864
No 7
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=13.13 E-value=1.1e+03 Score=24.95 Aligned_cols=121 Identities=13% Similarity=0.200 Sum_probs=69.8
Q ss_pred echhHHHHhhhh----hhHHHHhcccccccCCcchhHHHHHhhhhhHHHHHHhcCcceeeeeccchHHHHHHHHHHHhhc
Q 007049 37 LAPTTYIFFASA----IPVISFGEQLDRETDGTLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKN 112 (620)
Q Consensus 37 las~iflyFa~l----~PaIaFG~ll~~~T~~~igv~E~lls~ai~GiifslfsGQPL~Ilg~TGP~lif~~~ly~~~~~ 112 (620)
+.+.+-++++.+ .-..+-+...+++.+..=+....+.+++++.++=++|+|-|.+--+- +.-+-...+-
T Consensus 228 i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~e-------n~g~i~~tg~ 300 (429)
T 3qe7_A 228 ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGE-------NIGVMAITRV 300 (429)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHH-------HHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHH-------hHHHHHhcCC
Confidence 333444454443 33344444444333233468899999999999999999999775221 1111122222
Q ss_pred cCCccccchhhHHHHHHHHHHHHHHHHHHhccccchhccccchhhHHHHHHHHHH---HHHHHHHHhh
Q 007049 113 RSDLGSKLFLAWTGWVCMWTALLLFLLAILGACSIINRFTRIAGELFGLLIAMLF---MQEAIKGIVD 177 (620)
Q Consensus 113 ~~~~~~~~fl~~~~WvgiW~~~~~~i~aa~~~s~lv~~~TRFTeEiF~~lIs~iF---i~eai~~l~~ 177 (620)
.. =|++.|+++++++++.+. .+-..++.....+-+...-+.| ...+++.+.+
T Consensus 301 ~s-----------r~~~~~ag~~lillgl~p--k~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~ 355 (429)
T 3qe7_A 301 YS-----------TWVIGGAAIFAILLSCVG--KLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIE 355 (429)
T ss_dssp CC-----------HHHHHHHHHHHHHHTCCH--HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-----------hHHHHHHHHHHHHHHHHH--HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 168889999998887653 3334455666777776433333 3456666644
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.07 E-value=1.6e+02 Score=23.02 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.9
Q ss_pred CcchHHHHHhhhhHHhhhhhe
Q 007049 288 NVPLLYIIGAFIPATMIAVLY 308 (620)
Q Consensus 288 ~~p~~~i~~A~iPAlll~iLi 308 (620)
.+|+|.+.+|.+-|+++..|+
T Consensus 6 ~vp~WiIi~svl~GLLLL~Li 26 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLL 26 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHH
Confidence 478888888888887776654
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.00 E-value=1.4e+02 Score=23.17 Aligned_cols=21 Identities=5% Similarity=0.436 Sum_probs=16.1
Q ss_pred CcchHHHHHhhhhHHhhhhhe
Q 007049 288 NVPLLYIIGAFIPATMIAVLY 308 (620)
Q Consensus 288 ~~p~~~i~~A~iPAlll~iLi 308 (620)
++|+|.+.+|.+-|+++..|+
T Consensus 9 ~vp~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 478898888888887766554
No 10
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.72 E-value=1.6e+02 Score=21.68 Aligned_cols=21 Identities=5% Similarity=0.436 Sum_probs=16.2
Q ss_pred CcchHHHHHhhhhHHhhhhhe
Q 007049 288 NVPLLYIIGAFIPATMIAVLY 308 (620)
Q Consensus 288 ~~p~~~i~~A~iPAlll~iLi 308 (620)
++|+|.+..|.+-|+++-.|+
T Consensus 7 ~vp~wiIi~s~l~GLllL~li 27 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTIL 27 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 578898888888887766654
Done!