Query 007049
Match_columns 620
No_of_seqs 120 out of 550
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 15:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007049.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007049hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 34.7 16 0.0012 25.5 3.3 25 120-144 19-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 33.0 19 0.0014 24.9 3.5 25 120-144 18-42 (42)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 21.0 14 0.001 30.0 1.0 26 541-570 1-26 (158)
4 d3b45a1 f.51.1.1 (A:91-270) Gl 8.9 2.5E+02 0.018 23.2 6.1 59 44-104 61-119 (180)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 6.9 1.1E+02 0.0083 18.9 1.9 11 158-168 9-19 (30)
6 d1cmca_ a.43.1.5 (A:) Met repr 5.6 1.2E+02 0.0088 23.9 1.8 18 74-91 54-71 (104)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 5.4 3.6E+02 0.026 26.1 5.9 44 212-255 387-430 (472)
8 d1h2sb_ f.17.4.1 (B:) Sensory 5.4 1.9E+02 0.014 20.3 2.5 38 41-78 3-44 (60)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 4.6 1.4E+02 0.01 25.4 1.8 56 44-101 63-118 (189)
10 d2hg6a1 d.364.1.1 (A:1-106) Hy 4.5 48 0.0035 26.6 -1.4 13 149-161 27-39 (106)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=34.69 E-value=16 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcc
Q 007049 120 LFLAWTGWVCMWTALLLFLLAILGA 144 (620)
Q Consensus 120 ~fl~~~~WvgiW~~~~~~i~aa~~~ 144 (620)
-|+.|.-|.++-+.++++.+|++|+
T Consensus 19 gFi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999985
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=33.04 E-value=19 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcc
Q 007049 120 LFLAWTGWVCMWTALLLFLLAILGA 144 (620)
Q Consensus 120 ~fl~~~~WvgiW~~~~~~i~aa~~~ 144 (620)
-|+.|.-|.++=+.++++.+|++|+
T Consensus 18 gFik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999985
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=20.97 E-value=14 Score=30.02 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=20.5
Q ss_pred HHHHHHHHhHhhheeeechhhHhhHHHHHH
Q 007049 541 FTIFQTAYLLVCFGITWVPIAGVLFPVMIM 570 (620)
Q Consensus 541 FT~iQl~~l~~~~~v~~~~~aai~FP~~i~ 570 (620)
||+|+++..+++.||+ +++++|-+.-
T Consensus 1 FTLIELlVViaIIgIL----aaia~P~~~~ 26 (158)
T d2pila_ 1 FTLIELMIVIAIVGIL----AAVALPAYQD 26 (158)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999999888887776 6788886543
No 4
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=8.88 E-value=2.5e+02 Score=23.23 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=36.0
Q ss_pred HhhhhhhHHHHhcccccccCCcchhHHHHHhhhhhHHHHHHhcCcceeeeeccchHHHHHH
Q 007049 44 FFASAIPVISFGEQLDRETDGTLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYT 104 (620)
Q Consensus 44 yFa~l~PaIaFG~ll~~~T~~~igv~E~lls~ai~GiifslfsGQPL~Ilg~TGP~lif~~ 104 (620)
.+.|+..-..||..++++-+..-=..=.++++.++|++..++... ...|.+|-+...-.
T Consensus 61 l~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~ 119 (180)
T d3b45a1 61 ILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMG 119 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHH
Confidence 345566667788777776543222223345666677777788765 46788887544433
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.92 E-value=1.1e+02 Score=18.95 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q 007049 158 LFGLLIAMLFM 168 (620)
Q Consensus 158 iF~~lIs~iFi 168 (620)
||+++|++.|.
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888664
No 6
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=5.57 E-value=1.2e+02 Score=23.89 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHhcCccee
Q 007049 74 STALCGIIHSIIGGQPLL 91 (620)
Q Consensus 74 s~ai~GiifslfsGQPL~ 91 (620)
|.-+|-.+-.-|.||||-
T Consensus 54 SELLCEAFLHAfTGQPLP 71 (104)
T d1cmca_ 54 SELLCEAFLHAFTGQPLP 71 (104)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 556777788899999984
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.38 E-value=3.6e+02 Score=26.07 Aligned_cols=44 Identities=11% Similarity=-0.029 Sum_probs=24.3
Q ss_pred HHHHHHhhccccccccCcccccccccchhHHHHHHHHhhccccC
Q 007049 212 LHTALRSRKARSWRYGSGCLRGFIADYGVPLMVLVWTAVSYIPA 255 (620)
Q Consensus 212 ~~~a~~l~~fr~s~f~~~~vR~~iaDfgv~iaI~~~~~~~y~~~ 255 (620)
.+.++..|..|.+-+..+..|+-.--+++.+++++...+.|.+.
T Consensus 387 ~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~ 430 (472)
T d1wpga4 387 MCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 430 (472)
T ss_dssp HHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455566655555444444555555565666666666666553
No 8
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=5.36 E-value=1.9e+02 Score=20.33 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=26.5
Q ss_pred HHHHhhh---hhhHHHHhccc-ccccCCcchhHHHHHhhhhh
Q 007049 41 TYIFFAS---AIPVISFGEQL-DRETDGTLTAVQTLASTALC 78 (620)
Q Consensus 41 iflyFa~---l~PaIaFG~ll-~~~T~~~igv~E~lls~ai~ 78 (620)
+|+|... +.-||++|... ...|+..-.++|.-+|..++
T Consensus 3 vfifvgaltvlfgaiaygevtaaaatgdaaavqeaavsailg 44 (60)
T d1h2sb_ 3 VFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILG 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHhhhhhceehHhhhcCcHHHHHHHHHHHHHH
Confidence 5666544 55699999874 45677777788877766554
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=4.64 E-value=1.4e+02 Score=25.40 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=37.9
Q ss_pred HhhhhhhHHHHhcccccccCCcchhHHHHHhhhhhHHHHHHhcCcceeeeeccchHHH
Q 007049 44 FFASAIPVISFGEQLDRETDGTLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVI 101 (620)
Q Consensus 44 yFa~l~PaIaFG~ll~~~T~~~igv~E~lls~ai~GiifslfsGQPL~Ilg~TGP~li 101 (620)
.+.|+..-..||...++..+..-=..=.+++..+++++++++.++| .+|.+|-+--
T Consensus 63 l~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~--~vGaSG~v~g 118 (189)
T d2nr9a1 63 ILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYA 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC--cccchHHHHH
Confidence 4456667777787777655433333334567888888888888776 5799997544
No 10
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.47 E-value=48 Score=26.60 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=10.6
Q ss_pred hccccchhhHHHH
Q 007049 149 NRFTRIAGELFGL 161 (620)
Q Consensus 149 ~~~TRFTeEiF~~ 161 (620)
.|+-||+|+.||+
T Consensus 27 ~~ivRFSEDsFGm 39 (106)
T d2hg6a1 27 RYIVRFSEDSFGM 39 (106)
T ss_dssp EEEEESCGGGCSS
T ss_pred eEEEEecccccCC
Confidence 6788899998875
Done!