BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007053
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 564 bits (1453), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/385 (75%), Positives = 321/385 (83%), Gaps = 2/385 (0%)
Query: 208 DDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDE 267
DDV + ++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++NS+AVT +
Sbjct: 392 DDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 268 HFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP 327
F+ AL SNPSALRETVVEVP V WEDIGGLE+VKRELQE VQYPVEHP+KF KFGM+P
Sbjct: 451 DFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 510
Query: 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA 387
SKGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIFDKARQ+A
Sbjct: 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 570
Query: 388 PCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447
PCVLFFDELDSIA +NQ+LTEMDGMS KK VFIIGATNRPDIID
Sbjct: 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
Query: 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEI 507
PA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL LAK T GFSGAD+TEI
Sbjct: 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 690
Query: 508 CQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDA 567
CQRACK AIRE+IE +I RER R NP I+ HFEE+M++ARRSVSD
Sbjct: 691 CQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 750
Query: 568 DIRKYQAFAQTLQQSRGFGSEFRFP 592
DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 751 DIRKYEMFAQTLQQSRGFGS-FRFP 774
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 149/212 (70%), Positives = 181/212 (85%), Gaps = 3/212 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRK 215
T I CEGEP++REDE L+EVGYDDVGG RK
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDVGGCRK 211
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++D+GG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 563 bits (1451), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/385 (75%), Positives = 321/385 (83%), Gaps = 2/385 (0%)
Query: 208 DDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDE 267
DDV + ++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++NS+AVT +
Sbjct: 392 DDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 268 HFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP 327
F+ AL SNPSALRETVVEVP V WEDIGGLE+VKRELQE VQYPVEHP+KF KFGM+P
Sbjct: 451 DFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 510
Query: 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA 387
SKGVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIFDKARQ+A
Sbjct: 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 570
Query: 388 PCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447
PCVLFFDELDSIA +NQ+LTEMDGMS KK VFIIGATNRPDIID
Sbjct: 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630
Query: 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEI 507
PA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL LAK T GFSGAD+TEI
Sbjct: 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 690
Query: 508 CQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDA 567
CQRACK AIRE+IE +I RER R NP I+ HFEE+M++ARRSVSD
Sbjct: 691 CQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 750
Query: 568 DIRKYQAFAQTLQQSRGFGSEFRFP 592
DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct: 751 DIRKYEMFAQTLQQSRGFGS-FRFP 774
Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 181/212 (85%), Gaps = 3/212 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRK 215
T I CEGEP++REDE L+EVGYDD+GG RK
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRK 211
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/301 (76%), Positives = 248/301 (82%)
Query: 280 ALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGC 339
ALRETVVEVP V WEDIGGLE+VKRELQE VQYPVEHP+KF KFGM+PSKGVLFYGPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 340 GKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 399
GKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIFDKARQ+APCVLFFDELDSI
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 400 ATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQL 459
A +NQ+LTEMDGMS KK VFIIGATNRPDIIDPA+LRPGRLDQL
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 460 IYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 519
IYIPLPDE+SR+ I KA LRKSPV+KDVDL LAK T GFSGAD+TEICQRACK AIRE+
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240
Query: 520 IEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQAFAQTL 579
IE +I RER R NP I+ HFEE+M++ARRSVSD DIRKY+ FAQTL
Sbjct: 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300
Query: 580 Q 580
Q
Sbjct: 301 Q 301
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 323 bits (829), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 149/212 (70%), Positives = 181/212 (85%), Gaps = 3/212 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRK 215
T I CEGEP++REDE L+EVGYDDVGG RK
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDVGGCRK 211
Score = 195 bits (495), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++D+GG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 58/66 (87%), Gaps = 1/66 (1%)
Query: 208 DDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDE 267
DDV + ++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++NS+AVT +
Sbjct: 392 DDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 268 HFKTAL 273
F+ AL
Sbjct: 451 DFRWAL 456
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 322 bits (826), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 180/212 (84%), Gaps = 3/212 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNAVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRK 215
T I CEGEP++REDE L+EVGYDD+GG RK
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRK 211
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 208 DDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDE 267
DDV + ++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++NS+AVT +
Sbjct: 392 DDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 268 HFKTALGTSNPSALRETVVEVPNVNWEDIGG 298
F+ AL SNPSALRETVVEVP V WEDIGG
Sbjct: 451 DFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 321 bits (823), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 147/212 (69%), Positives = 180/212 (84%), Gaps = 3/212 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLV GGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRK 215
T I CEGEP++REDE L+EVGYDD+GG RK
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRK 211
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 208 DDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDE 267
DDV + ++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++NS+AVT +
Sbjct: 392 DDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 268 HFKTALGTSNPSALRETVVEVPNVNWEDIGG 298
F+ AL SNPSALRETVVEVP V WEDIGG
Sbjct: 451 DFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 147/212 (69%), Positives = 180/212 (84%), Gaps = 3/212 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRV LGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVGLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRK 215
T I CEGEP++REDE L+EVGYDD+GG RK
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRK 211
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK---REKTH 317
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
++QLLT MDG+ + V ++ ATNRP+ IDPAL R GR D+ + I +PD R
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521
L+I + + ++ DVDL +A T G GAD+ +C A AIR+ ++
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 208 DDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDE 267
DDV + ++A +THG+VGADLAALC+EAALQ IR+KMD+IDLEDETIDAE++NS+AVT +
Sbjct: 392 DDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 450
Query: 268 HFKTALGTSNPSALRETVVEVPNVNWEDIGG 298
F+ AL SNPSALRETVVEVP V WEDIGG
Sbjct: 451 DFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 145/212 (68%), Positives = 179/212 (84%), Gaps = 3/212 (1%)
Query: 2 SNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDT 61
S+ A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT
Sbjct: 2 SHMASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDT 59
Query: 62 ILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHI 121
+L+KG KR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+
Sbjct: 60 VLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 119
Query: 122 LPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVV 181
LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEF V+ETDP YC+V
Sbjct: 120 LPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIV 179
Query: 182 APDTEIFCEGEPVRREDENR-LDEVGYDDVGG 212
APDT I CEGEP++REDE L+EVGYDD+GG
Sbjct: 180 APDTVIHCEGEPIKREDEEESLNEVGYDDIGG 211
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 301 bits (772), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 138/189 (73%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Query: 28 PNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKI 87
PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KI
Sbjct: 3 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 62
Query: 88 RMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEA 147
RMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EA
Sbjct: 63 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 122
Query: 148 YRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVG 206
YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVG
Sbjct: 123 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 182
Query: 207 YDDVGGVRK 215
YDDVGG RK
Sbjct: 183 YDDVGGCRK 191
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 288 bits (738), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 132/188 (70%), Positives = 161/188 (85%), Gaps = 2/188 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 1 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 58
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 59 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 118
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 119 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 178
Query: 185 TEIFCEGE 192
T I CEGE
Sbjct: 179 TVIHCEGE 186
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 132/189 (69%), Positives = 159/189 (84%), Gaps = 2/189 (1%)
Query: 4 QAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTIL 63
A SD K D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L
Sbjct: 1 MASGSDTKSD--DLSTAILKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVL 58
Query: 64 IKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILP 123
+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP
Sbjct: 59 LKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLP 118
Query: 124 VDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAP 183
+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAP
Sbjct: 119 IDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAP 178
Query: 184 DTEIFCEGE 192
DT I CEGE
Sbjct: 179 DTVIHCEGE 187
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 126/172 (73%), Positives = 153/172 (88%)
Query: 28 PNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKI 87
PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KI
Sbjct: 5 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 64
Query: 88 RMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEA 147
RMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EA
Sbjct: 65 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 124
Query: 148 YRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDE 199
YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE
Sbjct: 125 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDE 176
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 246 bits (627), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 177/288 (61%), Gaps = 22/288 (7%)
Query: 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLA 345
+ VPNV W DIG LE+++ EL + PV +P++F+ G+ GVL GPPGCGKTLLA
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 346 KAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXX 405
KA+ANE NFISVKGPELL M+ GESE VR++F +A+ SAPCV+FFDE+D++ +
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR--- 118
Query: 406 XXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465
+NQLLTEMDG+ A++ VFI+ ATNRPDIIDPA+LRPGRLD+ +++ LP
Sbjct: 119 RSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
Query: 466 DEESRLQIFKACLR---KSPVSKDVDLRALAK--YTQGFSGADITEICQRACKYAIRENI 520
RL I K + K P+ DV+L A+A ++GAD++ + + A A+R+
Sbjct: 179 PPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ-- 236
Query: 521 EKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDAD 568
E R++S N + HFEE+ K R S+S D
Sbjct: 237 ----EMARQKSGN--------EKGELKVSHKHFEEAFKKVRSSISKKD 272
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 157/234 (67%)
Query: 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 344
V E PNV +EDIGGLE +E++E V+ P++HPE FEK G+ P KG+L YGPPG GKTLL
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 345 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 404
AKA+A E A FI V G EL+ + GE + V++IF A++ AP ++F DE+D+IA +
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
Query: 405 XXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464
L QLL EMDG A+ V IIGATNRPDI+DPA+LRPGR D++I +P
Sbjct: 128 DALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187
Query: 465 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
PDE+ RL+I K RK +++DV+L +AK T+G GA++ IC A AIRE
Sbjct: 188 PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 251
+ +IAK T G VGA+L A+CTEA + IRE D + ++D
Sbjct: 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 140/228 (61%), Gaps = 1/228 (0%)
Query: 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351
+ D+ G + K E+ E V+Y + P +F+K G KGVL GPPG GKTLLAKAIA E
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 352 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXX 411
+ F ++ G + + M+ G + VR++F++A+++APC++F DE+D++ Q
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 412 XXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRL 471
LNQ+L EMDG + + +I ATNRPD++DPALLRPGR D+ + + LPD R
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 472 QIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 519
QI K +R+ P++ D+D +A+ T GFSGAD+ + A +A R N
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 216 IAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 249
IA+ T G+ GADLA L EAAL R V+ +
Sbjct: 209 IARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 205 bits (521), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 144/234 (61%)
Query: 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 344
V +VP+ ++ +GGL +E++E ++ PV+HPE FE G++ KGV+ YGPPG GKTLL
Sbjct: 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198
Query: 345 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 404
A+A+A+ FI V G EL+ + GE VRE+F AR+ AP ++F DE+DSI +
Sbjct: 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258
Query: 405 XXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464
+ +LL ++DG K + II ATNR DI+DPALLRPGR+D+ I P
Sbjct: 259 EGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 465 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
P +R +I + RK +++ ++LR +A+ G SGAD+ +C A YA+RE
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 251
+RK+A+ +G GAD+ +CTEA + +RE+ + ED
Sbjct: 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQED 381
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 144/244 (59%)
Query: 276 SNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYG 335
++P T E + ++ IGGL REL+E ++ P+++PE F++ G+ P KGVL YG
Sbjct: 163 TDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYG 222
Query: 336 PPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 395
PPG GKTLLAKA+A ANFI ++ + GES +RE+F A++ PC++F DE
Sbjct: 223 PPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 396 LDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGR 455
+D+I + L +LLT+MDG II ATNRPD +DPALLRPGR
Sbjct: 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342
Query: 456 LDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 515
LD+ + IPLP+E RL+IFK K + + D A K + GF+GADI A +A
Sbjct: 343 LDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA 402
Query: 516 IREN 519
IR++
Sbjct: 403 IRDD 406
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 160/286 (55%), Gaps = 15/286 (5%)
Query: 253 TIDAEILN-SMAVTDEHFKTAL-------GTSNPSALRETVVEVPNVNWEDIGGLENVKR 304
T+D E+L SM+V AL S+ S + E E P+V + D+GGL+ K+
Sbjct: 125 TLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGEN--EKPDVTYADVGGLDMQKQ 182
Query: 305 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364
E++E V+ P+ + +E+ G+ P +GVL YGPPG GKT+L KA+AN +A FI V G E
Sbjct: 183 EIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242
Query: 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTE 424
+ + GE VR++F AR++AP ++F DE+DSIAT+ L +LLT+
Sbjct: 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ 302
Query: 425 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP-LPDEESRLQIFKACLRKSPV 483
MDG V +I ATNR D +DPALLRPGRLD+ I P L D R IF K +
Sbjct: 303 MDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL 362
Query: 484 SKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIE 525
+ + DL +L SGA I I Q A A+R+N ++ D+E
Sbjct: 363 APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 408
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 195 bits (495), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 138/232 (59%), Gaps = 1/232 (0%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++D+GG E EL+E V++ ++ P KF + G KG+L GPPG GKTLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
LNQLL EMDG +K+ + ++ ATNRPDI+DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 522
+I + R P+++DV+L +AK T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 169 KVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKIAKDTHGYVGADL 228
K I DPP+ EI +P+ ED N + IAK T G+VGADL
Sbjct: 179 KKIVVDPPDMLGRKKILEIHTRNKPLA-EDVN------------LEIIAKRTPGFVGADL 225
Query: 229 AALCTEAALQCIREKMDVIDLED--ETID 255
L EAAL RE D I ++D E ID
Sbjct: 226 ENLVNEAALLAAREGRDKITMKDFEEAID 254
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 1/232 (0%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++D+GG E EL+E V++ ++ P KF + G KG+L GPPG G TLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 411 XXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 470
LNQLL EMDG +K+ + ++ ATNRPDI+DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 471 LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 522
+I + R P+++DV+L +AK T GF GAD+ + A A RE +K
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 169 KVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKIAKDTHGYVGADL 228
K I DPP+ EI +P+ ED N + IAK T G+VGADL
Sbjct: 179 KKIVVDPPDMLGRKKILEIHTRNKPLA-EDVN------------LEIIAKRTPGFVGADL 225
Query: 229 AALCTEAALQCIREKMDVIDLED--ETID 255
L EAAL RE D I ++D E ID
Sbjct: 226 ENLVNEAALLAAREGRDKITMKDFEEAID 254
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 144/248 (58%), Gaps = 12/248 (4%)
Query: 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 349
V+++D+ G+ K E++E V Y ++ PE+F + G KG L GPPGCGKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 350 NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXX 409
E Q F+++ G E + + G A VR +F +AR APC+++ DE+D++ +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 410 -XXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 468
LNQLL EMDGM V ++ +TNR DI+D AL+RPGRLD+ ++I LP +
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 469 SRLQIFKACLRKSPVSKDVDLRA--LAKYTQGFSGADITEICQRACKYAIRE-------- 518
R +IF+ L+ +++ + LA+ T GFSGADI IC A +A RE
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240
Query: 519 NIEKDIER 526
N E +ER
Sbjct: 241 NFEYAVER 248
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 214 RKIAKDTHGYVGADLAALCTEAALQCIRE 242
+++A+ T G+ GAD+A +C EAAL RE
Sbjct: 204 QRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 140/241 (58%)
Query: 277 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 336
+PS TV E P+V + D+GG ++ +L+E V+ P+ PE+F G+ P KG+L YGP
Sbjct: 192 DPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGP 251
Query: 337 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 396
PG GKTL A+A+AN A FI V G EL+ + GE VRE+F+ AR C++FFDE+
Sbjct: 252 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI 311
Query: 397 DSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRL 456
D++ + +L+T++DG + + ++ ATNRP+ +DPALLRPGR+
Sbjct: 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRI 371
Query: 457 DQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 516
D+ + LPD E R IF+ + V + + +++ +GA++ +C A +AI
Sbjct: 372 DRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431
Query: 517 R 517
R
Sbjct: 432 R 432
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 146/244 (59%), Gaps = 4/244 (1%)
Query: 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 346
E PNV ++D+ G E K E+ E V + +++PE++ G KGVL GPPG GKTLLAK
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 347 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA-TQXXX 405
A+A E F S+ G + M+ G + VR++F+ A++ AP ++F DE+D+I ++
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 406 XXXXXXXXXXXXLNQLLTEMDGMSAKKT-VFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464
LNQLL EMDG ++ V ++ ATNRP+I+DPAL+RPGR D+ + +
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 465 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524
PD R++I K ++ ++ DV+L+ +AK T G +GAD+ I A A R N +K++
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-QKEV 241
Query: 525 ERER 528
++
Sbjct: 242 RQQH 245
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 143/242 (59%), Gaps = 1/242 (0%)
Query: 281 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 340
L + E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG G
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 61
Query: 341 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400
KT LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 401 TQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 460
+ LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 181
Query: 461 YIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 520
I PD + R QI + R P+++DVDL LAK T GF GAD+ + A A RE
Sbjct: 182 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 241
Query: 521 EK 522
K
Sbjct: 242 RK 243
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 343
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 344 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 403
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 404 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 463
LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 464 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGAD 503
PD + R QI + R P+++DVDL LAK T GF GAD
Sbjct: 200 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 142/239 (59%), Gaps = 1/239 (0%)
Query: 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 343
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 344 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 403
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 404 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 463
LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 464 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 522
PD + R QI + R P+++DVDL LAK T GF GAD+ + A A RE K
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 267
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 142/239 (59%), Gaps = 1/239 (0%)
Query: 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL 343
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 344 LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 403
LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 404 XXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 463
LNQLL EMDG + ++ ATNRPDI+DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 464 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 522
PD + R QI + R P+++DVDL LAK T GF GAD+ + A A RE K
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 267
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 135/233 (57%)
Query: 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 344
V E P + D+GGL+ EL E + P++ +KF+ G+ KG L YGPPG GKTLL
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231
Query: 345 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXX 404
A+A A + A F+ + P+L+ M+ GE VR+ F A++ AP ++F DELD+I T+
Sbjct: 232 ARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 291
Query: 405 XXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464
+ +LL ++DG S+ V ++ ATNR D++DPALLR GRLD+ I PL
Sbjct: 292 DSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351
Query: 465 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 517
P E+SR QI + RK D++ + LA+ T F+GA + + A A+R
Sbjct: 352 PSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 138/230 (60%)
Query: 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 348
P ++ DIGGLE+ +E++E+V+ P+ HPE +E+ G+ P KGV+ YG PG GKTLLAKA+
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 349 ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXX 408
AN+ A F+ + G EL+ + G+ R+IF A ++AP ++F DE+D+I T+
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 409 XXXXXXXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 468
+ +LL ++DG + V +I ATN+ + +DPAL+RPGR+D+ I PD
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 469 SRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
++ +I K +S+DV+L L SGADI +C A A+RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 225 GADLAALCTEAALQCIREKMDVIDLED 251
GAD+ A+CTEA L +RE+ + ED
Sbjct: 389 GADIQAMCTEAGLLALRERRMQVTAED 415
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 136/239 (56%), Gaps = 8/239 (3%)
Query: 282 RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGK 341
R ++ E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGK 73
Query: 342 TLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 401
+ LAKA+A E + F SV +L++ W GESE V+++F AR++ P ++F DE+D++
Sbjct: 74 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTG 133
Query: 402 QXXXXXXXXXXXXXXXLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDPALLRPGRLDQLI 460
+LL +M+G+ + V ++GATN P +D A+ R R ++ I
Sbjct: 134 TRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRI 188
Query: 461 YIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
YIPLPD +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 189 YIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 8/234 (3%)
Query: 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 346
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 102
Query: 347 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXX 406
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 162
Query: 407 XXXXXXXXXXXLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465
+LL +M+G+ + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 163 ESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217
Query: 466 DEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
D +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 218 DLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 8/234 (3%)
Query: 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 346
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 29 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 87
Query: 347 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXX 406
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 88 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 147
Query: 407 XXXXXXXXXXXLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465
+LL +M+G+ + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 148 ESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 202
Query: 466 DEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
D +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 203 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 8/234 (3%)
Query: 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 346
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 69
Query: 347 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXX 406
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 407 XXXXXXXXXXXLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465
+LL +M+G+ + V ++GATN P +D A+ R R ++ IYIPLP
Sbjct: 130 ESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 184
Query: 466 DEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
D +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 150/302 (49%), Gaps = 22/302 (7%)
Query: 281 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 340
+ E + P VNWEDI G+E K ++E V +P+ P+ F P KG+L +GPPG G
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTG 129
Query: 341 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400
KTL+ K IA++ A F S+ L + W GE E VR +F AR P V+F DE+DS+
Sbjct: 130 KTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLL 189
Query: 401 TQXXXXXXXXXXXXXXXLNQLLTEMDG--MSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 458
+Q + L ++DG S++ + ++GATNRP ID A R RL +
Sbjct: 190 SQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVK 244
Query: 459 LIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 517
+YIPLP+ +R QI + K + ++ + + + FSGAD+T++C+ A IR
Sbjct: 245 RLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
Query: 518 ENIEKDIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQAFAQ 577
DI P I + FE + + R SVS D+ Y+ + +
Sbjct: 305 SLQTADIATITPDQVRP-------------IAYIDFENAFRTVRPSVSPKDLELYENWNK 351
Query: 578 TL 579
T
Sbjct: 352 TF 353
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTA 272
+ +I + + + GAD+ LC EA+L IR + D+ TI + + +A D F+ A
Sbjct: 276 IEQIVQQSDAFSGADMTQLCREASLGPIR-SLQTADI--ATITPDQVRPIAYID--FENA 330
Query: 273 LGTSNPS 279
T PS
Sbjct: 331 FRTVRPS 337
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 9/237 (3%)
Query: 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 344
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 61
Query: 345 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 403
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 404 XXXXXXXXXXXXXXLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 462
+ L +M G+ + ++GATN P ++D A+ R R ++ IYI
Sbjct: 122 SENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 463 PLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
PLP+ +R +FK L + S + D R L + T G+SGADI+ I + A +R+
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 199 ENRLDEVGYDDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEI 258
+N L E + R++ + T GY GAD++ + +A +Q +R+ + +
Sbjct: 196 QNSLTEADF------RELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRA 249
Query: 259 LNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN-WEDIGGLENVKRELQETVQYPVEH 316
+ V D T +P A+ T ++VP E + + ++ R L T EH
Sbjct: 250 DPNHLVDD--LLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH 306
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 155/307 (50%), Gaps = 35/307 (11%)
Query: 281 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 340
L E V V W DI G + K+ LQE V P PE F +P+KG+L +GPPG G
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNG 66
Query: 341 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400
KTLLA+A+A EC A F+++ L + + G+ E VR +F AR P ++F DE+DS+
Sbjct: 67 KTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL 126
Query: 401 TQXXXXXXXXXXXXXXXLNQLLTEMDGMSAK---KTVFIIGATNRPDIIDPALLRPGRLD 457
++ + L E DG+ + ++ ATNRP +D A LR R
Sbjct: 127 SERSSSEHEASRRLK---TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 458 QLIYIPLPDEESRLQIFKACLRK--SPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 515
+ +Y+ LPDE++R + L+K SP+ + LR LAK T G+SG+D+T + + A
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEP 240
Query: 516 IRE-NIEK----DIERERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIR 570
IRE N+E+ DI R +E F S+K RRSV+ +
Sbjct: 241 IRELNVEQVKCLDISAMRAITEQ------------------DFHSSLKRIRRSVAPQSLN 282
Query: 571 KYQAFAQ 577
Y+ ++Q
Sbjct: 283 SYEKWSQ 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 209 DVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSM-AVTDE 267
D +R++AK T GY G+DL AL +AAL+ IRE L E + +++M A+T++
Sbjct: 210 DTEALRRLAKITDGYSGSDLTALAKDAALEPIRE------LNVEQVKCLDISAMRAITEQ 263
Query: 268 HFKTAL 273
F ++L
Sbjct: 264 DFHSSL 269
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 132/237 (55%), Gaps = 9/237 (3%)
Query: 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 344
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 183
Query: 345 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQX 403
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243
Query: 404 XXXXXXXXXXXXXXLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 462
+ L +M G+ + ++GATN P ++D A+ R R ++ IYI
Sbjct: 244 SENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
Query: 463 PLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
PLP+ +R +F+ L + S + D + L + T G+SGADI+ I + A +R+
Sbjct: 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 145/286 (50%), Gaps = 24/286 (8%)
Query: 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350
V ++DI G + K+ LQE V P PE F +P++G+L +GPPG GKT+LAKA+A
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 351 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXX 410
E A F ++ L + + GE E VR +F AR+ P ++F D++DS+ +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 411 XXXXXXXLNQLLTEMDGM--SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 468
+ L E DG+ + V ++GATNRP +D A+LR R + +Y+ LP+EE
Sbjct: 231 SRRLK---TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEE 285
Query: 469 SR--LQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 526
+R L C + SP+++ +L LA+ T G+SG+D+T + + A IRE
Sbjct: 286 TRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRE-------- 336
Query: 527 ERRRSENPXXXXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKY 572
P I+ F ES+K +RSVS + Y
Sbjct: 337 -----LKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 215 KIAKDTHGYVGADLAALCTEAALQCIRE 242
++A+ T GY G+DL AL +AAL IRE
Sbjct: 309 QLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 463 PLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
P P+EE+RL I K RK +++ ++LR +A+ G SGA++ +C A YA+RE
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 251
+RKIA+ G GA++ +CTEA +RE+ + ED
Sbjct: 27 LRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVTQED 65
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 465 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
P+EE+RL I K RK +++ ++LR +A+ G SGA++ +C A YA+RE
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 251
+RKIA+ G GA++ +CTEA + +RE+ + ED
Sbjct: 35 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 73
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 386
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 387 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTV-------FIIGA 439
+LF DE+ ++ Q + + A +T+ +IGA
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-----IGQGPAARTIRLELPRFTLIGA 144
Query: 440 TNRPDIID-PALLRPGRLDQLIY 461
T RP +I P L R G ++ L Y
Sbjct: 145 TTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 386
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 387 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTV-------FIIGA 439
+LF DE+ ++ Q + + A +T+ +IGA
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-----IGQGPAARTIRLELPRFTLIGA 144
Query: 440 TNRPDIID-PALLRPGRLDQLIY 461
T RP +I P L R G ++ L Y
Sbjct: 145 TTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 386
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 387 APCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTV-------FIIGA 439
+LF DE+ ++ Q + + A +T+ +IGA
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-----IGQGPAARTIRLELPRFTLIGA 144
Query: 440 TNRPDIID-PALLRPGRLDQLIY 461
T RP +I P L R G ++ L Y
Sbjct: 145 TTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 358 SVKGPELL 365
GP L+
Sbjct: 81 VTSGPVLV 88
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 358 SVKGPELL 365
GP L+
Sbjct: 81 VTSGPVLV 88
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 358 SVKGPELL 365
GP L+
Sbjct: 81 VTSGPVLV 88
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 358 SVKGPELL 365
GP L+
Sbjct: 81 VTSGPVLV 88
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 358 SVKGPELL 365
GP L+
Sbjct: 81 VTSGPVLV 88
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
G ENVK++L ++ E + VL GPPG G+T LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGRTTLAHIIASELQTNIH 80
Query: 358 SVKGPELL 365
GP L+
Sbjct: 81 VTSGPVLV 88
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 358 SVKGPELLTMWF--GESEANVREIFDKARQSAPCV-----LFFDELDSI 399
V+ + + + E ++ +R++ D A + V +F DE+D I
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 332 LFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVREIF 380
+ G PG GKT +A+ +A + N + PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 381 DKARQSAPCVLFFD 394
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 332 LFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVREIF 380
+ G PG GKT +A+ +A + N + PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 381 DKARQSAPCVLFFD 394
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVREIFDKA 383
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 119
Query: 384 RQSAPCVLFFDELDSI 399
+S + D+++ +
Sbjct: 120 YKSQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVREIFDKA 383
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 120
Query: 384 RQSAPCVLFFDELDSI 399
+S + D+++ +
Sbjct: 121 YKSQLSCVVVDDIERL 136
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 352
GL+ VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93
Query: 353 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 395
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 352
GL+ VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 86
Query: 353 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 395
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 87 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 131
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 466 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IE 521
D + IF K +S++VDL SGADI ICQ + A+REN +
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 522 KDIER 526
KD E+
Sbjct: 62 KDFEK 66
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 358 SVKGPELLTMWF--GESEANVREIFDKA 383
V+ + + + E ++ +R++ D A
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 352
GL+ VK ++ET + + +K G+ +P+ F G PG GKT +A A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHR 93
Query: 353 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 395
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDE 138
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPC- 389
++ +GPPG GKT LA+ IA A+ + +T E +RE ++ARQ+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKE----IREAIERARQNRNAG 105
Query: 390 ---VLFFDEL 396
+LF DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351
N++ G E++K+ L + + E + +LF GP G GKT LA I+ E
Sbjct: 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDH--------ILFSGPAGLGKTTLANIISYE 78
Query: 352 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400
AN + P + E ++ I S +LF DE+ ++
Sbjct: 79 XSANIKTTAAPXI------EKSGDLAAIL--TNLSEGDILFIDEIHRLS 119
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 328 SKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESE 373
+ VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357
L N R Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRXQ--LQEPLRHE-------VTP-KNILXIGPTGVGKTEIARRLAKLANAPFI 79
Query: 358 SVKGPELLTMWF--GESEANVREIFDKA 383
V+ + + + E ++ +R++ D A
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 331 VLFYGPPGCGKTLLAKAIANE-------------CQANFISVKGPELLTMWFGESEANVR 377
+L GP G GKTL+A+ +A +A ++ +LT S+ NV+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 378 EIFDKARQSAPCVLFFDELDSIA 400
KA++ ++F DE+D I+
Sbjct: 135 ----KAQKG---IVFIDEIDKIS 150
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 383
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 383
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 383
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 32/118 (27%)
Query: 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC- 352
+DI G E++ + L+ V K G P +LF GPPG GKT A A+A E
Sbjct: 25 DDIVGQEHIVKRLKHYV-----------KTGSMPH--LLFAGPPGVGKTTAALALARELF 71
Query: 353 ----QANFISVKGPELLTMWFGESEANV-REIFDKARQSAPC------VLFFDELDSI 399
+ NF+ + + E NV RE + ++ P ++F DE D++
Sbjct: 72 GENWRHNFLELNASD-------ERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 122
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANV----R 377
G + VL G PG GKT +A +A + F ++ G E+ ++ ++EA R
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 378 EIFDKARQSAPCVLFFDELDSI 399
I + + A + E+D I
Sbjct: 126 SIGVRIKAGAVHTVSLHEIDVI 147
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 328 SKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVREIFDKA 383
+ VL GPPG GKT LA AIA E + F G E+ + ++E + E F +A
Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEV-LXENFRRA 133
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 353
E+ GLE VK + E + +K K P + GPPG GKT LAK+IA
Sbjct: 81 EEHHGLEKVKERILEYLAV-----QKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLG 133
Query: 354 ANFISV 359
F+ +
Sbjct: 134 RKFVRI 139
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 332 LFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFGESEANVREI 379
+ G PG GKT + + +A + +KG +L + + GE E ++ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 380 F-DKARQSAPCVLFFDELDSI 399
D A+Q +LF DEL ++
Sbjct: 107 LNDLAKQEGNVILFIDELHTM 127
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 464 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 517
LPD E R IF+ + V + + +++ +GA++ +C A +AIR
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 60
>pdb|3B3X|A Chain A, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|3B3X|B Chain B, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|2WK0|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WK0|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2X71|A Chain A, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|2X71|B Chain B, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|4A5R|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
pdb|4A5R|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
Length = 265
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 257 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 314
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 315 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 369
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|2Y91|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
pdb|2Y91|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
Length = 265
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 257 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 314
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 315 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 369
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 268 HFKTALGTSNPSALRETVVEVPNVNWED-----IGGLENVKRELQETVQYPVEHPEKFEK 322
H +T S +AL + +++ + E IG E ++R +Q ++ +P
Sbjct: 3 HMQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNP----- 57
Query: 323 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFG 370
+ G PG GKT + + +A + +KG ++++ + G
Sbjct: 58 ---------VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRG 108
Query: 371 ESEANVREIFDKARQS-APCVLFFDELDSI 399
E E ++ + + QS +LF DEL ++
Sbjct: 109 EFEERLKAVIQEVVQSQGEVILFIDELHTV 138
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 319 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351
KF G P +LFYGPPG GKT A+A E
Sbjct: 39 KFVDEGKLPH--LLFYGPPGTGKTSTIVALARE 69
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 465 PDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518
PD +R +F+ + +P V D R L T+G+SG+DI + + A IR+
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANV----R 377
G + VL G PG GKT +A A + F ++ G E+ ++ ++EA R
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRR 140
Query: 378 EIFDKARQSAPCVLFFDELDSI 399
I + ++ P V+ L I
Sbjct: 141 SIGVRIKEGPPGVVHTVSLHEI 162
>pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 257 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 314
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 90 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 148
Query: 315 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 369
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 149 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 200
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 384
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 385 QSAPCVLFFDELDSIA 400
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 384
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 385 QSAPCVLFFDELDSIA 400
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365
+LFYGPPG GKT A+ E + GP+L+
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|1W7F|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
pdb|1W7F|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
Length = 307
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 257 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 314
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 115 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 173
Query: 315 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 369
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 174 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 225
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 331 VLFYGPPGCGKTLLAKAIANE-----CQANFISVKGPELLTMWFGESEANVREIFDKARQ 385
+LF GPPG GKT A A+A + + NFI + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 386 SAPC------VLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGA 439
+AP ++F DE D++ L M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAA---------------LRRTMEMYSKSCRFILSC 139
Query: 440 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 498
II+P R + P+P E + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 321 EKFGMSPSKG----VLFYGP-PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 375
E F SKG ++ + P PG GKT +AKA+ ++ A+ + V G + + N
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTN 95
Query: 376 VREI--FDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKT 433
FD RQ V+ DE D L + M+ S+ +
Sbjct: 96 FASAASFD-GRQK---VIVIDEFDRSGLAESQ-------------RHLRSFMEAYSSNCS 138
Query: 434 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480
+ II A N II P R ++I P +E ++++ K +R+
Sbjct: 139 I-IITANNIDGIIKPLQSRC----RVITFGQPTDEDKIEMMKQMIRR 180
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 331 VLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQ 385
+LF GPPG GKT A A+A + + NFI + + + VR + +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFAR 94
Query: 386 SAPC------VLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMSAKKTVFIIGA 439
+AP ++F DE D++ L M +K FI+
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAA---------------LRRTMEMYSKSCRFILSC 139
Query: 440 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 498
II+P R + P+P E + ++ + C ++ + L AL + G
Sbjct: 140 NYVSRIIEPI---QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 291 VNWEDIGGLENVKRELQETVQ--YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 348
VN+ D + L+E +Q VE P F L G PG GKT L AI
Sbjct: 5 VNFTDKQFENRLNDNLEELIQGKKAVESPTAF-----------LLGGQPGSGKTSLRSAI 53
Query: 349 ANECQANFISV 359
E Q N I +
Sbjct: 54 FEETQGNVIVI 64
>pdb|3SOI|A Chain A, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
pdb|3SOI|B Chain B, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
Length = 258
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 257 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 314
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 70 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 128
Query: 315 EHPEKFE 321
+PE+FE
Sbjct: 129 TNPERFE 135
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 329 KGVLFYGPPGCGKTLLAKAIANE 351
+ + YGPPG GKT A +A E
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQE 100
>pdb|2BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|2BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|4BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
pdb|4BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
Length = 265
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 257 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 314
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 315 EHPEKFE 321
+PE+FE
Sbjct: 132 TNPERFE 138
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 466 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 525
D E R IF+ + V + + +++ +GA++ +C A +AIR + E
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 526 RE 527
++
Sbjct: 62 KD 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,849,203
Number of Sequences: 62578
Number of extensions: 691846
Number of successful extensions: 2525
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2332
Number of HSP's gapped (non-prelim): 146
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)