Query 007053
Match_columns 620
No_of_seqs 569 out of 3968
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-83 2.9E-88 695.8 30.0 505 15-578 2-692 (693)
2 TIGR01243 CDC48 AAA family ATP 100.0 6.8E-74 1.5E-78 665.0 43.6 535 30-581 3-731 (733)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 8.9E-71 1.9E-75 587.2 25.5 358 212-581 384-790 (802)
4 KOG0736 Peroxisome assembly fa 100.0 2.7E-58 5.9E-63 502.3 22.7 359 212-580 586-952 (953)
5 COG1222 RPT1 ATP-dependent 26S 100.0 7.6E-57 1.7E-61 458.4 19.8 254 284-562 141-394 (406)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 2.6E-54 5.5E-59 461.3 19.5 302 287-594 183-536 (802)
7 KOG0735 AAA+-type ATPase [Post 100.0 2.5E-52 5.4E-57 451.7 31.9 334 216-581 601-937 (952)
8 KOG0738 AAA+-type ATPase [Post 100.0 7.3E-50 1.6E-54 409.2 18.7 286 282-580 200-489 (491)
9 COG0464 SpoVK ATPases of the A 100.0 9.8E-49 2.1E-53 436.7 23.0 316 210-565 171-488 (494)
10 COG1223 Predicted ATPase (AAA+ 100.0 9.2E-47 2E-51 368.6 20.3 308 133-563 50-358 (368)
11 KOG0728 26S proteasome regulat 100.0 2.2E-45 4.7E-50 357.1 16.1 256 285-565 138-393 (404)
12 KOG0727 26S proteasome regulat 100.0 1E-44 2.2E-49 352.8 16.9 251 285-560 146-396 (408)
13 KOG0729 26S proteasome regulat 100.0 2.1E-44 4.7E-49 352.8 15.6 261 275-560 158-418 (435)
14 KOG0739 AAA+-type ATPase [Post 100.0 1.4E-44 3.1E-49 358.9 12.8 292 284-581 123-437 (439)
15 KOG0734 AAA+-type ATPase conta 100.0 3.6E-44 7.7E-49 378.3 15.2 244 288-560 298-541 (752)
16 KOG0730 AAA+-type ATPase [Post 100.0 7.1E-44 1.5E-48 386.9 16.1 268 289-594 180-459 (693)
17 KOG0652 26S proteasome regulat 100.0 1.8E-43 3.8E-48 345.5 15.5 251 286-561 163-413 (424)
18 KOG0726 26S proteasome regulat 100.0 2.2E-43 4.7E-48 349.4 14.7 249 287-560 178-426 (440)
19 PTZ00454 26S protease regulato 100.0 6.9E-42 1.5E-46 368.4 18.5 254 285-563 136-389 (398)
20 TIGR01243 CDC48 AAA family ATP 100.0 8.6E-41 1.9E-45 388.3 26.3 296 288-594 172-478 (733)
21 KOG0731 AAA+-type ATPase conta 100.0 1.6E-41 3.4E-46 379.0 17.4 248 289-562 306-555 (774)
22 KOG0737 AAA+-type ATPase [Post 100.0 3.5E-41 7.6E-46 345.9 17.7 278 289-571 87-370 (386)
23 PRK03992 proteasome-activating 100.0 2.9E-41 6.2E-46 364.7 17.7 259 283-566 120-378 (389)
24 KOG0741 AAA+-type ATPase [Post 100.0 2.4E-40 5.1E-45 349.2 21.2 408 79-573 54-505 (744)
25 PTZ00361 26 proteosome regulat 100.0 7.2E-40 1.6E-44 355.0 17.5 252 286-562 175-426 (438)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 3.6E-39 7.8E-44 354.3 21.8 315 211-578 165-483 (489)
27 COG0465 HflB ATP-dependent Zn 100.0 2.3E-39 5E-44 356.5 16.7 267 288-580 144-419 (596)
28 TIGR01241 FtsH_fam ATP-depende 100.0 1.4E-37 3E-42 346.6 17.6 252 285-562 46-297 (495)
29 TIGR01242 26Sp45 26S proteasom 100.0 2.7E-37 5.9E-42 331.8 17.7 251 285-560 113-363 (364)
30 KOG0651 26S proteasome regulat 100.0 1.4E-37 3.1E-42 311.2 10.2 248 288-560 126-373 (388)
31 TIGR03689 pup_AAA proteasome A 100.0 2.6E-36 5.7E-41 331.3 18.9 194 285-480 173-380 (512)
32 KOG0732 AAA+-type ATPase conta 100.0 1.1E-36 2.5E-41 347.7 12.3 330 213-564 194-529 (1080)
33 KOG0740 AAA+-type ATPase [Post 100.0 3.4E-36 7.4E-41 319.5 13.6 281 283-581 142-425 (428)
34 CHL00176 ftsH cell division pr 100.0 1.2E-35 2.6E-40 335.9 18.3 247 288-560 177-423 (638)
35 PRK10733 hflB ATP-dependent me 100.0 9.1E-34 2E-38 323.6 18.0 248 289-562 147-394 (644)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 4E-33 8.8E-38 329.8 15.8 213 314-560 1616-1877(2281)
37 PLN00020 ribulose bisphosphate 100.0 3.3E-31 7.2E-36 275.1 13.7 200 291-498 112-330 (413)
38 KOG0736 Peroxisome assembly fa 100.0 2.1E-29 4.6E-34 276.5 19.5 251 328-594 431-697 (953)
39 KOG0735 AAA+-type ATPase [Post 99.9 2.2E-25 4.8E-30 242.9 13.8 244 327-594 430-692 (952)
40 COG0464 SpoVK ATPases of the A 99.9 1.4E-23 3.1E-28 234.5 16.7 257 312-594 2-267 (494)
41 KOG0741 AAA+-type ATPase [Post 99.9 6.5E-22 1.4E-26 210.1 11.3 249 211-476 427-684 (744)
42 KOG0744 AAA+-type ATPase [Post 99.9 4.2E-22 9.2E-27 201.2 7.6 187 292-480 140-342 (423)
43 CHL00181 cbbX CbbX; Provisiona 99.9 3.7E-21 8E-26 199.8 13.4 215 293-521 22-260 (287)
44 KOG0743 AAA+-type ATPase [Post 99.8 4.7E-21 1E-25 202.8 12.9 208 291-508 198-413 (457)
45 TIGR02880 cbbX_cfxQ probable R 99.8 3.2E-21 7E-26 200.2 9.8 213 294-519 22-257 (284)
46 TIGR02881 spore_V_K stage V sp 99.8 1.1E-20 2.3E-25 194.3 12.7 213 293-519 5-242 (261)
47 PF00004 AAA: ATPase family as 99.8 3.8E-21 8.3E-26 175.2 7.7 130 331-464 1-132 (132)
48 KOG0742 AAA+-type ATPase [Post 99.8 2.1E-19 4.5E-24 186.2 15.0 179 326-511 382-588 (630)
49 TIGR02639 ClpA ATP-dependent C 99.8 8.7E-18 1.9E-22 195.7 16.0 247 291-583 179-456 (731)
50 PF05496 RuvB_N: Holliday junc 99.7 2.5E-17 5.4E-22 162.0 12.0 190 288-510 18-224 (233)
51 TIGR00635 ruvB Holliday juncti 99.7 2.1E-16 4.6E-21 165.8 17.6 192 292-516 2-210 (305)
52 TIGR00763 lon ATP-dependent pr 99.7 4.2E-17 9.1E-22 191.0 13.4 205 294-519 320-558 (775)
53 PRK00080 ruvB Holliday junctio 99.7 4.6E-16 1E-20 165.1 16.9 195 290-517 21-232 (328)
54 COG2256 MGS1 ATPase related to 99.7 1.2E-15 2.5E-20 159.6 16.0 149 289-478 19-176 (436)
55 COG2255 RuvB Holliday junction 99.7 2.6E-15 5.7E-20 150.4 16.6 196 288-516 20-232 (332)
56 PRK11034 clpA ATP-dependent Cl 99.7 8.2E-16 1.8E-20 177.7 14.9 245 292-582 184-459 (758)
57 PF02359 CDC48_N: Cell divisio 99.6 9E-16 1.9E-20 131.1 7.8 79 30-110 1-84 (87)
58 TIGR02928 orc1/cdc6 family rep 99.6 6.3E-15 1.4E-19 158.4 16.0 207 289-518 10-257 (365)
59 KOG2004 Mitochondrial ATP-depe 99.6 7.5E-15 1.6E-19 161.6 13.0 164 294-478 411-596 (906)
60 PRK00411 cdc6 cell division co 99.6 1.1E-14 2.3E-19 158.2 14.3 207 289-518 25-265 (394)
61 COG0466 Lon ATP-dependent Lon 99.6 1.3E-14 2.9E-19 160.6 14.2 171 294-478 323-508 (782)
62 PRK10787 DNA-binding ATP-depen 99.6 3.8E-14 8.3E-19 165.1 18.6 205 293-519 321-559 (784)
63 TIGR02902 spore_lonB ATP-depen 99.6 1.5E-14 3.1E-19 162.6 13.2 195 289-518 60-315 (531)
64 PRK07003 DNA polymerase III su 99.6 3.1E-14 6.8E-19 160.7 15.1 193 290-514 12-227 (830)
65 PRK10865 protein disaggregatio 99.5 2E-14 4.4E-19 169.4 12.5 165 291-481 175-357 (857)
66 PRK12323 DNA polymerase III su 99.5 3.6E-14 7.8E-19 158.4 12.8 187 289-513 11-231 (700)
67 TIGR03345 VI_ClpV1 type VI sec 99.5 2.1E-14 4.5E-19 169.0 11.5 185 290-500 183-390 (852)
68 CHL00095 clpC Clp protease ATP 99.5 8E-14 1.7E-18 164.4 16.3 186 290-501 175-382 (821)
69 PRK13342 recombination factor 99.5 1.6E-13 3.5E-18 150.2 17.4 150 290-480 8-166 (413)
70 PRK14956 DNA polymerase III su 99.5 6.1E-14 1.3E-18 153.1 11.8 173 289-498 13-214 (484)
71 TIGR00362 DnaA chromosomal rep 99.5 7.9E-14 1.7E-18 152.3 12.6 172 328-516 136-319 (405)
72 PRK07940 DNA polymerase III su 99.5 5.9E-14 1.3E-18 151.6 11.4 191 292-508 3-215 (394)
73 PRK04195 replication factor C 99.5 1.2E-13 2.6E-18 154.1 13.6 190 290-515 10-207 (482)
74 TIGR03346 chaperone_ClpB ATP-d 99.5 7.4E-14 1.6E-18 165.2 12.3 185 290-500 169-376 (852)
75 PRK00149 dnaA chromosomal repl 99.5 8.9E-14 1.9E-18 153.8 12.1 201 289-516 117-331 (450)
76 PRK05342 clpX ATP-dependent pr 99.5 3.3E-13 7.1E-18 146.6 15.8 222 296-519 73-382 (412)
77 PRK14960 DNA polymerase III su 99.5 2.1E-13 4.6E-18 152.7 14.3 186 290-513 11-225 (702)
78 PRK14962 DNA polymerase III su 99.5 4E-13 8.6E-18 148.5 15.9 173 289-498 9-210 (472)
79 PRK14949 DNA polymerase III su 99.5 3.3E-13 7.1E-18 155.2 15.3 191 289-512 11-225 (944)
80 PRK07994 DNA polymerase III su 99.5 7.1E-13 1.5E-17 150.2 15.6 190 290-512 12-225 (647)
81 KOG2028 ATPase related to the 99.5 3.8E-13 8.3E-18 138.4 11.7 151 328-506 162-336 (554)
82 PRK12402 replication factor C 99.5 7.9E-13 1.7E-17 140.3 14.8 190 290-515 11-231 (337)
83 PTZ00112 origin recognition co 99.5 9.9E-13 2.2E-17 149.1 15.9 193 289-505 750-976 (1164)
84 PRK14961 DNA polymerase III su 99.4 5.2E-13 1.1E-17 143.7 12.2 191 290-512 12-225 (363)
85 PRK14958 DNA polymerase III su 99.4 6.4E-13 1.4E-17 148.3 12.9 188 289-514 11-227 (509)
86 PRK06645 DNA polymerase III su 99.4 6.7E-13 1.5E-17 147.3 12.4 195 289-515 16-237 (507)
87 PRK13341 recombination factor 99.4 1E-12 2.2E-17 151.6 14.2 149 290-479 24-182 (725)
88 PRK07764 DNA polymerase III su 99.4 1.1E-12 2.4E-17 153.0 14.6 190 290-512 11-226 (824)
89 TIGR00382 clpX endopeptidase C 99.4 1.4E-12 3.1E-17 141.0 14.3 222 295-518 78-387 (413)
90 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.3E-13 1.4E-17 133.1 10.7 188 291-516 12-210 (226)
91 PRK14088 dnaA chromosomal repl 99.4 9.7E-13 2.1E-17 144.8 12.0 170 329-515 131-313 (440)
92 PHA02544 44 clamp loader, smal 99.4 1.6E-12 3.5E-17 137.0 12.9 156 290-478 17-173 (316)
93 PRK14963 DNA polymerase III su 99.4 1.4E-12 3E-17 145.3 12.9 173 289-498 9-209 (504)
94 KOG0732 AAA+-type ATPase conta 99.4 1.6E-13 3.4E-18 158.8 5.4 248 213-479 463-727 (1080)
95 PRK14964 DNA polymerase III su 99.4 1.3E-12 2.8E-17 144.1 12.3 187 290-514 9-224 (491)
96 PRK08691 DNA polymerase III su 99.4 1.6E-12 3.4E-17 146.9 13.2 194 289-514 11-227 (709)
97 PRK14951 DNA polymerase III su 99.4 2.5E-12 5.4E-17 145.4 14.3 193 290-514 12-232 (618)
98 PLN03025 replication factor C 99.4 2.1E-12 4.5E-17 136.7 12.8 180 290-511 9-201 (319)
99 PF05673 DUF815: Protein of un 99.4 3.9E-12 8.4E-17 127.1 13.7 167 287-484 20-213 (249)
100 PRK12422 chromosomal replicati 99.4 2.1E-12 4.5E-17 142.0 13.0 168 328-511 141-317 (445)
101 COG1474 CDC6 Cdc6-related prot 99.4 5.1E-12 1.1E-16 135.4 15.6 235 290-574 13-279 (366)
102 TIGR00390 hslU ATP-dependent p 99.4 1.5E-12 3.2E-17 139.4 10.8 176 295-474 13-342 (441)
103 PRK14952 DNA polymerase III su 99.4 3.5E-12 7.5E-17 143.8 14.1 192 290-514 9-226 (584)
104 TIGR02639 ClpA ATP-dependent C 99.4 1.1E-12 2.3E-17 153.2 10.4 234 262-519 415-715 (731)
105 PRK05563 DNA polymerase III su 99.4 3.9E-12 8.5E-17 143.7 14.6 187 289-513 11-226 (559)
106 TIGR02397 dnaX_nterm DNA polym 99.4 4.1E-12 9E-17 136.0 12.5 191 289-512 9-223 (355)
107 PRK06893 DNA replication initi 99.4 2.8E-12 6.1E-17 129.3 10.6 148 329-498 40-195 (229)
108 PRK11034 clpA ATP-dependent Cl 99.4 6.6E-12 1.4E-16 145.6 15.0 207 294-520 458-720 (758)
109 PRK08084 DNA replication initi 99.4 4.6E-12 1E-16 128.2 12.1 184 289-510 17-212 (235)
110 PRK14969 DNA polymerase III su 99.4 2E-12 4.4E-17 145.1 10.2 191 290-512 12-225 (527)
111 PRK05201 hslU ATP-dependent pr 99.4 1.7E-12 3.7E-17 138.9 9.1 177 295-475 16-345 (443)
112 PRK14086 dnaA chromosomal repl 99.4 2.1E-12 4.5E-17 144.7 10.2 172 329-516 315-497 (617)
113 TIGR02903 spore_lon_C ATP-depe 99.4 5.3E-12 1.2E-16 144.1 13.7 225 288-561 148-431 (615)
114 PRK14957 DNA polymerase III su 99.3 3.9E-12 8.5E-17 142.2 12.1 191 290-512 12-225 (546)
115 PRK07133 DNA polymerase III su 99.3 1.7E-11 3.7E-16 139.9 16.6 190 289-511 13-223 (725)
116 PRK08903 DnaA regulatory inact 99.3 5.8E-12 1.3E-16 126.6 11.5 179 289-510 13-202 (227)
117 PRK14970 DNA polymerase III su 99.3 5.8E-12 1.3E-16 135.8 12.2 190 289-510 12-212 (367)
118 PRK14965 DNA polymerase III su 99.3 8.2E-12 1.8E-16 141.7 13.7 191 289-512 11-225 (576)
119 PRK14959 DNA polymerase III su 99.3 4.7E-12 1E-16 142.4 11.3 178 289-498 11-212 (624)
120 PRK05896 DNA polymerase III su 99.3 4.7E-12 1E-16 141.8 11.2 188 290-510 12-223 (605)
121 PF00308 Bac_DnaA: Bacterial d 99.3 3.7E-12 8E-17 127.6 8.5 195 289-511 3-212 (219)
122 PRK14953 DNA polymerase III su 99.3 8.6E-12 1.9E-16 138.5 11.5 191 289-512 11-225 (486)
123 KOG0989 Replication factor C, 99.3 1E-11 2.2E-16 126.1 10.9 178 289-498 31-222 (346)
124 PRK06647 DNA polymerase III su 99.3 9.3E-12 2E-16 140.3 11.8 188 289-509 11-222 (563)
125 TIGR02640 gas_vesic_GvpN gas v 99.3 1.5E-11 3.3E-16 126.5 11.3 133 328-478 21-198 (262)
126 PRK06305 DNA polymerase III su 99.3 1.8E-11 3.9E-16 135.0 12.4 177 290-498 13-214 (451)
127 PRK08727 hypothetical protein; 99.3 3E-11 6.5E-16 122.2 12.7 151 329-507 42-201 (233)
128 PRK08451 DNA polymerase III su 99.3 3.2E-11 7E-16 134.3 14.0 193 290-515 10-226 (535)
129 PRK05642 DNA replication initi 99.3 3.2E-11 6.8E-16 122.1 12.6 157 328-509 45-210 (234)
130 cd00009 AAA The AAA+ (ATPases 99.3 1.9E-11 4.1E-16 111.7 10.1 137 298-463 2-150 (151)
131 PRK00440 rfc replication facto 99.3 3.8E-11 8.3E-16 126.3 13.4 178 290-509 13-202 (319)
132 PRK14955 DNA polymerase III su 99.3 1.8E-11 3.9E-16 133.3 10.6 190 289-511 11-232 (397)
133 COG2812 DnaX DNA polymerase II 99.3 4.1E-11 8.9E-16 132.0 13.1 195 289-515 11-228 (515)
134 PRK14087 dnaA chromosomal repl 99.2 9.6E-12 2.1E-16 137.2 7.9 173 328-517 141-329 (450)
135 PRK09111 DNA polymerase III su 99.2 3.2E-11 6.9E-16 136.7 11.9 191 289-511 19-237 (598)
136 PRK14954 DNA polymerase III su 99.2 1.6E-10 3.4E-15 131.3 17.0 190 289-511 11-232 (620)
137 PRK06620 hypothetical protein; 99.2 5.4E-11 1.2E-15 118.7 11.2 172 289-509 11-191 (214)
138 PRK13407 bchI magnesium chelat 99.2 1.1E-10 2.3E-15 123.6 14.0 161 289-478 3-216 (334)
139 PRK14948 DNA polymerase III su 99.2 4.5E-11 9.8E-16 136.2 11.8 179 289-498 11-214 (620)
140 TIGR01650 PD_CobS cobaltochela 99.2 2.5E-11 5.5E-16 126.9 8.2 140 327-480 63-235 (327)
141 PRK14971 DNA polymerase III su 99.2 8E-11 1.7E-15 134.2 12.2 183 290-510 13-225 (614)
142 TIGR03345 VI_ClpV1 type VI sec 99.2 1.3E-10 2.7E-15 137.2 13.8 199 294-519 566-834 (852)
143 COG0593 DnaA ATPase involved i 99.2 8.4E-11 1.8E-15 126.1 10.1 174 328-518 113-297 (408)
144 PRK14950 DNA polymerase III su 99.2 1.4E-10 3.1E-15 132.1 11.7 189 289-509 11-223 (585)
145 TIGR03346 chaperone_ClpB ATP-d 99.2 3.9E-10 8.5E-15 133.8 15.6 204 293-520 564-830 (852)
146 CHL00081 chlI Mg-protoporyphyr 99.1 4E-10 8.7E-15 119.6 13.6 162 288-478 11-232 (350)
147 PHA02244 ATPase-like protein 99.1 7.1E-10 1.5E-14 117.4 14.0 124 328-467 119-263 (383)
148 CHL00095 clpC Clp protease ATP 99.1 5.8E-10 1.3E-14 131.9 14.8 200 294-519 509-785 (821)
149 TIGR02030 BchI-ChlI magnesium 99.1 6.5E-10 1.4E-14 117.9 13.0 155 292-478 2-219 (337)
150 PRK09087 hypothetical protein; 99.1 3.9E-10 8.5E-15 113.5 10.6 136 329-497 45-186 (226)
151 PRK10865 protein disaggregatio 99.1 5.4E-10 1.2E-14 132.2 13.2 201 293-519 567-832 (857)
152 COG0542 clpA ATP-binding subun 99.1 2.9E-10 6.3E-15 129.8 10.4 161 294-480 491-707 (786)
153 TIGR02442 Cob-chelat-sub cobal 99.1 7.8E-10 1.7E-14 127.2 13.2 155 292-478 2-214 (633)
154 COG0714 MoxR-like ATPases [Gen 99.1 8.3E-10 1.8E-14 117.4 12.3 135 328-478 43-203 (329)
155 KOG1969 DNA replication checkp 99.1 1.1E-09 2.4E-14 121.9 12.8 167 326-517 324-517 (877)
156 PRK09112 DNA polymerase III su 99.1 6.1E-10 1.3E-14 119.0 10.5 179 289-499 18-233 (351)
157 PF07728 AAA_5: AAA domain (dy 99.1 1.1E-10 2.3E-15 108.1 4.1 110 330-456 1-139 (139)
158 PRK05564 DNA polymerase III su 99.1 1.7E-09 3.7E-14 114.2 13.7 173 292-498 2-182 (313)
159 PRK11331 5-methylcytosine-spec 99.0 8.2E-10 1.8E-14 119.8 11.2 141 293-464 174-357 (459)
160 TIGR00678 holB DNA polymerase 99.0 8.3E-10 1.8E-14 107.8 10.2 148 327-498 13-183 (188)
161 COG2607 Predicted ATPase (AAA+ 99.0 3.7E-09 8E-14 104.3 13.8 168 287-485 53-246 (287)
162 PRK07471 DNA polymerase III su 99.0 1.2E-09 2.7E-14 117.3 11.3 159 289-478 14-213 (365)
163 COG0542 clpA ATP-binding subun 99.0 1.2E-09 2.6E-14 124.9 10.1 166 290-480 166-348 (786)
164 TIGR03015 pepcterm_ATPase puta 99.0 2.2E-09 4.7E-14 110.4 11.0 193 328-561 43-267 (269)
165 COG3829 RocR Transcriptional r 99.0 6.3E-10 1.4E-14 121.2 7.3 196 289-515 240-479 (560)
166 KOG1514 Origin recognition com 99.0 4.2E-09 9.2E-14 117.1 13.6 224 329-583 423-678 (767)
167 smart00382 AAA ATPases associa 99.0 8E-10 1.7E-14 99.8 6.4 126 328-465 2-147 (148)
168 COG0470 HolB ATPase involved i 99.0 2.9E-09 6.2E-14 112.2 11.2 149 295-475 2-178 (325)
169 PRK07399 DNA polymerase III su 99.0 2.1E-09 4.6E-14 113.3 9.9 177 292-502 2-217 (314)
170 TIGR00764 lon_rel lon-related 99.0 1.8E-09 4E-14 123.1 10.0 54 286-354 10-63 (608)
171 COG2204 AtoC Response regulato 98.9 8.4E-10 1.8E-14 120.2 6.2 245 291-566 138-435 (464)
172 KOG0991 Replication factor C, 98.9 1.6E-08 3.4E-13 99.3 14.2 154 291-479 24-186 (333)
173 COG1224 TIP49 DNA helicase TIP 98.9 1E-08 2.3E-13 106.1 13.1 61 294-365 39-104 (450)
174 TIGR02329 propionate_PrpR prop 98.9 2.8E-09 6.2E-14 119.4 9.3 194 291-515 209-450 (526)
175 TIGR00368 Mg chelatase-related 98.9 1.4E-08 3E-13 113.2 14.4 144 291-468 189-394 (499)
176 PRK11608 pspF phage shock prot 98.9 5.3E-09 1.2E-13 111.0 10.3 192 293-515 5-240 (326)
177 PRK13531 regulatory ATPase Rav 98.9 1.6E-08 3.4E-13 110.8 13.6 151 296-477 22-193 (498)
178 smart00350 MCM minichromosome 98.9 2E-08 4.3E-13 112.9 14.6 164 296-479 205-401 (509)
179 PRK08058 DNA polymerase III su 98.9 5.2E-09 1.1E-13 111.3 9.4 154 292-476 3-180 (329)
180 PF07724 AAA_2: AAA domain (Cd 98.9 1.2E-09 2.5E-14 105.3 4.0 113 327-444 2-131 (171)
181 COG1221 PspF Transcriptional r 98.9 4.2E-09 9.2E-14 112.8 8.5 199 289-518 73-312 (403)
182 PF01078 Mg_chelatase: Magnesi 98.9 2.2E-09 4.8E-14 105.3 5.8 45 293-352 2-46 (206)
183 PF07726 AAA_3: ATPase family 98.9 1.3E-09 2.7E-14 98.8 3.5 107 330-456 1-129 (131)
184 PRK05707 DNA polymerase III su 98.9 6.6E-09 1.4E-13 110.1 9.5 151 327-499 21-196 (328)
185 COG3604 FhlA Transcriptional r 98.9 3.1E-09 6.7E-14 114.5 7.0 203 289-515 218-456 (550)
186 PF00158 Sigma54_activat: Sigm 98.9 1.8E-09 4E-14 103.6 4.6 132 297-459 2-157 (168)
187 TIGR01817 nifA Nif-specific re 98.9 3.2E-09 6.9E-14 120.2 7.2 198 289-517 191-430 (534)
188 TIGR02974 phageshock_pspF psp 98.9 3.5E-09 7.5E-14 112.5 7.0 168 328-515 22-233 (329)
189 PRK15424 propionate catabolism 98.9 5.5E-09 1.2E-13 117.1 8.8 193 291-514 216-464 (538)
190 PRK05022 anaerobic nitric oxid 98.8 1E-08 2.2E-13 115.3 9.4 196 292-518 185-423 (509)
191 COG1219 ClpX ATP-dependent pro 98.8 1.4E-08 2.9E-13 103.9 8.9 101 328-428 97-203 (408)
192 PRK10820 DNA-binding transcrip 98.8 2.6E-08 5.5E-13 112.3 11.4 198 289-517 199-439 (520)
193 COG1220 HslU ATP-dependent pro 98.8 6.2E-08 1.3E-12 99.8 12.9 83 389-475 252-346 (444)
194 TIGR00602 rad24 checkpoint pro 98.8 7.1E-08 1.5E-12 109.8 14.6 202 290-516 80-329 (637)
195 PRK15429 formate hydrogenlyase 98.8 2.6E-08 5.6E-13 116.1 11.0 244 290-565 372-658 (686)
196 PRK04132 replication factor C 98.8 1.5E-08 3.2E-13 118.2 8.8 145 329-498 565-723 (846)
197 PRK11388 DNA-binding transcrip 98.8 2.1E-08 4.7E-13 115.9 10.2 195 290-515 321-554 (638)
198 TIGR02031 BchD-ChlD magnesium 98.7 3.9E-08 8.5E-13 112.1 11.0 132 328-478 16-174 (589)
199 PF13177 DNA_pol3_delta2: DNA 98.7 5.8E-08 1.3E-12 92.7 10.1 137 298-465 1-161 (162)
200 KOG0745 Putative ATP-dependent 98.7 4.7E-08 1E-12 103.5 8.5 101 328-428 226-332 (564)
201 KOG2227 Pre-initiation complex 98.7 3.5E-07 7.5E-12 98.1 15.0 203 294-518 150-382 (529)
202 PRK08116 hypothetical protein; 98.6 1.8E-08 3.8E-13 104.1 4.3 69 328-398 114-189 (268)
203 PRK06964 DNA polymerase III su 98.6 5.9E-08 1.3E-12 103.2 8.3 133 326-477 19-203 (342)
204 PRK06871 DNA polymerase III su 98.6 1.3E-07 2.7E-12 100.0 10.6 148 299-477 7-178 (325)
205 PF05621 TniB: Bacterial TniB 98.6 1.1E-07 2.5E-12 98.0 9.3 207 290-519 33-273 (302)
206 smart00763 AAA_PrkA PrkA AAA d 98.6 3E-07 6.5E-12 97.6 11.6 61 293-361 49-118 (361)
207 PRK09862 putative ATP-dependen 98.6 3.2E-07 6.9E-12 102.1 12.1 143 292-468 189-391 (506)
208 PRK07993 DNA polymerase III su 98.6 2E-07 4.4E-12 99.1 10.0 132 326-476 22-178 (334)
209 PF02933 CDC48_2: Cell divisio 98.6 1.3E-07 2.8E-12 75.9 6.4 59 133-194 4-62 (64)
210 PRK13765 ATP-dependent proteas 98.6 2.3E-07 5.1E-12 105.9 10.9 52 286-352 23-74 (637)
211 PF01637 Arch_ATPase: Archaeal 98.6 9.2E-08 2E-12 95.1 6.3 179 297-500 2-228 (234)
212 PRK08769 DNA polymerase III su 98.5 3.2E-07 6.9E-12 96.8 9.9 168 299-502 9-204 (319)
213 PRK06090 DNA polymerase III su 98.5 4.7E-07 1E-11 95.5 10.7 147 299-476 8-178 (319)
214 PF13173 AAA_14: AAA domain 98.5 3.8E-07 8.2E-12 83.4 7.9 70 329-400 3-74 (128)
215 COG1239 ChlI Mg-chelatase subu 98.5 4.6E-06 1E-10 89.2 17.0 161 290-480 13-234 (423)
216 PRK08181 transposase; Validate 98.5 9.3E-08 2E-12 98.5 3.9 71 328-400 106-180 (269)
217 TIGR02915 PEP_resp_reg putativ 98.5 1.8E-07 3.9E-12 103.4 6.3 193 294-517 139-374 (445)
218 PF14532 Sigma54_activ_2: Sigm 98.4 1.2E-07 2.6E-12 87.9 2.9 60 328-401 21-83 (138)
219 PF03215 Rad17: Rad17 cell cyc 98.4 1.9E-06 4.2E-11 96.5 12.7 201 292-516 17-269 (519)
220 KOG0990 Replication factor C, 98.4 3.1E-07 6.8E-12 94.3 5.6 159 290-483 37-208 (360)
221 KOG2035 Replication factor C, 98.4 4.2E-06 9.2E-11 84.5 13.2 175 292-498 11-220 (351)
222 PRK10923 glnG nitrogen regulat 98.4 4.9E-07 1.1E-11 100.7 7.4 194 293-517 137-373 (469)
223 PRK06526 transposase; Provisio 98.4 1.7E-07 3.6E-12 96.1 2.9 72 327-400 97-172 (254)
224 COG0606 Predicted ATPase with 98.4 2.9E-07 6.2E-12 99.5 4.4 48 290-352 175-222 (490)
225 PRK08699 DNA polymerase III su 98.4 6.3E-07 1.4E-11 95.0 6.9 132 326-476 19-183 (325)
226 KOG1051 Chaperone HSP104 and r 98.3 1.2E-06 2.7E-11 101.9 9.4 127 295-443 563-711 (898)
227 COG1484 DnaC DNA replication p 98.3 4.3E-07 9.3E-12 93.1 5.1 71 327-399 104-179 (254)
228 PRK11361 acetoacetate metaboli 98.3 8.9E-07 1.9E-11 98.2 7.9 168 328-515 166-376 (457)
229 PRK06835 DNA replication prote 98.3 2E-07 4.3E-12 98.9 2.5 70 328-399 183-258 (329)
230 PRK09183 transposase/IS protei 98.3 3.6E-07 7.7E-12 94.0 3.9 72 327-399 101-176 (259)
231 PRK08939 primosomal protein Dn 98.3 3.7E-07 8E-12 96.0 3.7 70 327-398 155-228 (306)
232 PF13401 AAA_22: AAA domain; P 98.3 1.4E-06 2.9E-11 79.3 7.0 99 328-441 4-126 (131)
233 TIGR01818 ntrC nitrogen regula 98.3 1.4E-06 3.1E-11 96.8 8.5 193 295-517 135-369 (463)
234 PF01695 IstB_IS21: IstB-like 98.3 2.4E-07 5.2E-12 89.9 2.0 70 327-398 46-119 (178)
235 PRK12377 putative replication 98.3 4.3E-07 9.3E-12 92.6 3.6 70 328-399 101-175 (248)
236 PF03152 UFD1: Ubiquitin fusio 98.3 6.1E-06 1.3E-10 79.2 10.4 137 40-181 24-164 (176)
237 PRK06921 hypothetical protein; 98.3 4.4E-07 9.5E-12 93.6 2.7 69 327-398 116-188 (266)
238 COG1222 RPT1 ATP-dependent 26S 98.2 1.3E-06 2.9E-11 91.1 5.9 45 216-277 349-393 (406)
239 PRK07952 DNA replication prote 98.2 7.2E-07 1.6E-11 90.7 3.9 69 329-399 100-174 (244)
240 PRK10365 transcriptional regul 98.2 2.9E-06 6.3E-11 93.6 9.0 168 328-515 162-372 (441)
241 PF05729 NACHT: NACHT domain 98.2 3.9E-06 8.5E-11 78.9 8.1 141 330-480 2-165 (166)
242 PTZ00111 DNA replication licen 98.2 4.6E-06 9.9E-11 97.4 9.4 160 296-475 452-654 (915)
243 KOG1942 DNA helicase, TBP-inte 98.2 5.9E-06 1.3E-10 83.9 8.8 37 327-363 63-101 (456)
244 PRK15115 response regulator Gl 98.2 2.4E-06 5.2E-11 94.5 6.7 217 328-566 157-416 (444)
245 PF03969 AFG1_ATPase: AFG1-lik 98.1 1.7E-06 3.6E-11 93.0 3.9 142 325-493 59-208 (362)
246 PRK13406 bchD magnesium chelat 98.1 1.5E-05 3.2E-10 90.6 10.9 122 329-469 26-173 (584)
247 cd01120 RecA-like_NTPases RecA 98.1 8.8E-06 1.9E-10 76.0 7.4 109 331-443 2-137 (165)
248 PLN03210 Resistant to P. syrin 98.1 2.8E-05 6.2E-10 95.9 13.5 176 290-500 180-389 (1153)
249 KOG1970 Checkpoint RAD17-RFC c 98.1 5.8E-05 1.2E-09 82.8 14.0 173 328-515 110-320 (634)
250 PF12775 AAA_7: P-loop contain 98.0 1.5E-06 3.1E-11 90.1 1.0 140 327-480 32-195 (272)
251 KOG0738 AAA+-type ATPase [Post 98.0 4.9E-06 1.1E-10 87.5 4.3 72 209-281 402-474 (491)
252 PF00931 NB-ARC: NB-ARC domain 98.0 2.8E-05 6.1E-10 80.5 10.0 152 326-499 17-195 (287)
253 PF00910 RNA_helicase: RNA hel 98.0 2.1E-05 4.6E-10 69.7 7.3 62 331-400 1-62 (107)
254 KOG2680 DNA helicase TIP49, TB 97.9 6.8E-05 1.5E-09 76.6 11.3 42 324-365 62-105 (454)
255 PRK05917 DNA polymerase III su 97.9 2.9E-05 6.3E-10 80.6 8.7 120 327-465 18-154 (290)
256 PF06068 TIP49: TIP49 C-termin 97.9 1E-05 2.2E-10 85.5 5.4 82 293-383 23-106 (398)
257 KOG2228 Origin recognition com 97.9 2.2E-05 4.8E-10 81.4 6.3 161 295-478 25-219 (408)
258 COG3283 TyrR Transcriptional r 97.8 5.4E-05 1.2E-09 79.0 8.6 200 289-517 199-434 (511)
259 COG1485 Predicted ATPase [Gene 97.8 1.8E-05 4E-10 82.8 5.3 138 325-490 62-208 (367)
260 TIGR02237 recomb_radB DNA repa 97.8 2.4E-05 5.2E-10 77.4 6.0 78 324-401 8-111 (209)
261 TIGR02012 tigrfam_recA protein 97.8 4.7E-05 1E-09 80.3 7.7 118 324-441 51-190 (321)
262 PRK07276 DNA polymerase III su 97.8 0.0002 4.4E-09 74.5 11.9 128 326-475 22-172 (290)
263 PLN03086 PRLI-interacting fact 97.8 0.00043 9.3E-09 77.6 15.1 155 31-190 79-256 (567)
264 PRK05818 DNA polymerase III su 97.8 7.1E-05 1.5E-09 76.3 8.0 121 326-465 5-147 (261)
265 KOG1816 Ubiquitin fusion-degra 97.7 0.00017 3.6E-09 73.1 10.1 145 41-190 37-186 (308)
266 PF12774 AAA_6: Hydrolytic ATP 97.7 6E-05 1.3E-09 76.1 6.8 66 328-400 32-97 (231)
267 COG3284 AcoR Transcriptional a 97.7 2.4E-05 5.2E-10 87.3 4.3 169 328-516 336-541 (606)
268 PRK07132 DNA polymerase III su 97.7 0.00021 4.6E-09 74.9 10.9 131 327-476 17-160 (299)
269 PRK00771 signal recognition pa 97.7 0.00069 1.5E-08 74.6 14.5 203 326-561 93-333 (437)
270 cd00983 recA RecA is a bacter 97.7 8.2E-05 1.8E-09 78.6 6.8 118 324-441 51-190 (325)
271 COG1373 Predicted ATPase (AAA+ 97.7 0.00049 1.1E-08 75.2 13.1 124 330-473 39-162 (398)
272 cd01121 Sms Sms (bacterial rad 97.6 0.00011 2.5E-09 79.3 7.9 78 324-401 78-172 (372)
273 KOG2383 Predicted ATPase [Gene 97.6 5.4E-05 1.2E-09 80.2 5.1 161 326-513 112-298 (467)
274 PRK11823 DNA repair protein Ra 97.6 0.00013 2.7E-09 81.0 7.8 78 324-401 76-170 (446)
275 KOG1968 Replication factor C, 97.6 7.2E-05 1.6E-09 88.0 6.2 164 330-514 359-535 (871)
276 PF13207 AAA_17: AAA domain; P 97.6 4.4E-05 9.5E-10 68.5 3.2 30 331-360 2-31 (121)
277 KOG0480 DNA replication licens 97.6 0.0002 4.3E-09 79.7 8.7 166 293-479 344-543 (764)
278 PF00493 MCM: MCM2/3/5 family 97.6 7.6E-05 1.6E-09 79.6 5.3 163 296-479 26-222 (331)
279 PF14516 AAA_35: AAA-like doma 97.6 0.0034 7.3E-08 67.0 17.8 161 327-499 30-232 (331)
280 PRK09361 radB DNA repair and r 97.6 9E-05 1.9E-09 74.3 5.4 39 324-362 19-60 (225)
281 PRK09376 rho transcription ter 97.5 0.00046 9.9E-09 74.2 10.2 27 328-354 169-195 (416)
282 COG3267 ExeA Type II secretory 97.5 0.00094 2E-08 67.3 11.7 173 330-518 53-256 (269)
283 TIGR01618 phage_P_loop phage n 97.5 0.0002 4.3E-09 71.7 6.9 72 328-401 12-95 (220)
284 PF05707 Zot: Zonular occluden 97.5 0.00013 2.9E-09 71.6 5.7 123 331-465 3-146 (193)
285 PRK08118 topology modulation p 97.5 0.00012 2.7E-09 70.2 5.2 32 330-361 3-34 (167)
286 COG1618 Predicted nucleotide k 97.5 0.00036 7.7E-09 65.7 7.9 27 327-353 4-30 (179)
287 PRK00131 aroK shikimate kinase 97.5 8.2E-05 1.8E-09 70.9 3.9 34 326-359 2-35 (175)
288 COG1241 MCM2 Predicted ATPase 97.5 0.00035 7.5E-09 80.0 9.5 162 295-478 287-483 (682)
289 cd01394 radB RadB. The archaea 97.4 0.00021 4.6E-09 71.2 6.1 38 324-361 15-55 (218)
290 PRK09354 recA recombinase A; P 97.4 0.00034 7.4E-09 74.5 7.5 117 324-440 56-194 (349)
291 PHA00729 NTP-binding motif con 97.4 0.00018 3.8E-09 72.1 5.0 28 329-356 18-45 (226)
292 TIGR01425 SRP54_euk signal rec 97.4 0.0054 1.2E-07 67.3 16.9 204 327-561 99-340 (429)
293 PRK07261 topology modulation p 97.4 0.00026 5.7E-09 68.1 5.6 32 330-361 2-33 (171)
294 KOG1051 Chaperone HSP104 and r 97.4 0.00054 1.2E-08 80.4 8.9 140 328-480 208-365 (898)
295 cd01129 PulE-GspE PulE/GspE Th 97.4 0.00072 1.6E-08 69.8 9.0 94 291-398 57-160 (264)
296 cd01124 KaiC KaiC is a circadi 97.4 0.0003 6.6E-09 67.9 5.9 30 331-360 2-34 (187)
297 KOG2543 Origin recognition com 97.3 0.0016 3.5E-08 68.9 11.2 159 296-478 8-193 (438)
298 PRK12723 flagellar biosynthesi 97.3 0.0016 3.4E-08 70.7 11.5 165 327-506 173-377 (388)
299 COG5271 MDN1 AAA ATPase contai 97.3 0.00069 1.5E-08 81.7 9.0 135 327-479 1542-1704(4600)
300 cd01128 rho_factor Transcripti 97.3 0.00072 1.6E-08 69.1 8.3 29 326-354 14-42 (249)
301 PRK10867 signal recognition pa 97.3 0.0034 7.4E-08 69.1 13.6 205 326-561 98-341 (433)
302 cd01131 PilT Pilus retraction 97.3 0.00054 1.2E-08 67.6 6.7 67 330-396 3-83 (198)
303 PF13191 AAA_16: AAA ATPase do 97.3 0.00033 7.1E-09 67.2 5.0 58 296-363 2-62 (185)
304 TIGR01420 pilT_fam pilus retra 97.3 0.00058 1.3E-08 73.2 7.4 71 327-397 121-205 (343)
305 PRK08533 flagellar accessory p 97.3 0.00047 1E-08 69.7 6.3 37 324-360 20-59 (230)
306 PF13604 AAA_30: AAA domain; P 97.2 0.0009 1.9E-08 65.9 8.0 98 328-441 18-131 (196)
307 COG1116 TauB ABC-type nitrate/ 97.2 0.00056 1.2E-08 68.9 6.3 28 325-352 26-53 (248)
308 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0035 7.6E-08 70.1 13.2 156 387-582 81-243 (489)
309 PRK06067 flagellar accessory p 97.2 0.00057 1.2E-08 69.0 6.3 37 324-360 21-60 (234)
310 PRK15455 PrkA family serine pr 97.2 0.00023 5E-09 79.6 3.5 63 292-361 74-137 (644)
311 cd03283 ABC_MutS-like MutS-lik 97.2 0.00071 1.5E-08 66.8 6.7 75 323-397 20-115 (199)
312 PF09336 Vps4_C: Vps4 C termin 97.2 0.00035 7.6E-09 55.6 3.6 34 546-579 28-61 (62)
313 PRK10536 hypothetical protein; 97.2 0.0016 3.5E-08 66.4 9.3 23 329-351 75-97 (262)
314 PF00437 T2SE: Type II/IV secr 97.2 0.00045 9.7E-09 71.3 5.4 99 289-398 99-208 (270)
315 KOG0481 DNA replication licens 97.2 0.012 2.7E-07 64.4 15.9 169 296-476 333-525 (729)
316 TIGR00416 sms DNA repair prote 97.2 0.00087 1.9E-08 74.4 7.6 78 324-401 90-184 (454)
317 COG4619 ABC-type uncharacteriz 97.2 0.0014 3E-08 62.2 7.7 29 324-352 25-53 (223)
318 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.00061 1.3E-08 68.6 5.8 117 324-441 15-168 (235)
319 KOG0478 DNA replication licens 97.1 0.001 2.2E-08 74.8 7.6 158 295-468 430-616 (804)
320 PRK14974 cell division protein 97.1 0.0014 3E-08 69.9 8.3 26 327-352 139-164 (336)
321 PF09262 PEX-1N: Peroxisome bi 97.1 0.00054 1.2E-08 57.3 4.1 73 116-190 1-79 (80)
322 PF03266 NTPase_1: NTPase; In 97.1 0.00064 1.4E-08 65.3 5.2 23 330-352 1-23 (168)
323 TIGR00959 ffh signal recogniti 97.1 0.01 2.2E-07 65.3 15.1 204 327-561 98-340 (428)
324 PRK13947 shikimate kinase; Pro 97.1 0.00038 8.3E-09 66.5 3.5 31 330-360 3-33 (171)
325 KOG3347 Predicted nucleotide k 97.1 0.00033 7.2E-09 64.9 2.9 33 328-360 7-39 (176)
326 PRK03839 putative kinase; Prov 97.1 0.00036 7.7E-09 67.5 3.2 31 330-360 2-32 (180)
327 PF13671 AAA_33: AAA domain; P 97.1 0.00032 7E-09 64.6 2.6 27 331-357 2-28 (143)
328 PRK14722 flhF flagellar biosyn 97.1 0.0015 3.3E-08 70.4 8.0 110 326-450 135-266 (374)
329 TIGR02782 TrbB_P P-type conjug 97.1 0.0022 4.7E-08 67.5 8.9 71 327-397 131-214 (299)
330 cd00464 SK Shikimate kinase (S 97.0 0.00045 9.7E-09 64.5 3.4 31 330-360 1-31 (154)
331 PRK05973 replicative DNA helic 97.0 0.0043 9.4E-08 62.9 10.6 37 324-360 60-99 (237)
332 PRK00625 shikimate kinase; Pro 97.0 0.00047 1E-08 66.6 3.5 31 330-360 2-32 (173)
333 PHA02624 large T antigen; Prov 97.0 0.0013 2.8E-08 74.0 7.1 122 324-464 427-561 (647)
334 cd01393 recA_like RecA is a b 97.0 0.0014 3E-08 65.6 6.8 116 324-440 15-166 (226)
335 PRK04296 thymidine kinase; Pro 97.0 0.002 4.4E-08 63.1 7.7 70 330-399 4-90 (190)
336 PF06745 KaiC: KaiC; InterPro 97.0 0.0015 3.2E-08 65.6 6.5 97 324-426 15-148 (226)
337 TIGR02858 spore_III_AA stage I 97.0 0.0018 3.9E-08 67.0 7.2 25 329-353 112-136 (270)
338 KOG2170 ATPase of the AAA+ sup 97.0 0.002 4.4E-08 66.3 7.4 97 296-400 84-191 (344)
339 PRK13949 shikimate kinase; Pro 97.0 0.00059 1.3E-08 65.6 3.4 31 330-360 3-33 (169)
340 PRK09519 recA DNA recombinatio 97.0 0.0022 4.8E-08 74.8 8.5 117 324-440 56-194 (790)
341 PRK14532 adenylate kinase; Pro 96.9 0.00059 1.3E-08 66.4 3.3 35 330-366 2-36 (188)
342 COG3854 SpoIIIAA ncharacterize 96.9 0.0024 5.3E-08 63.4 7.4 72 328-399 137-230 (308)
343 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00065 1.4E-08 65.6 3.3 34 331-366 2-35 (183)
344 PRK14531 adenylate kinase; Pro 96.9 0.00075 1.6E-08 65.6 3.6 35 329-365 3-37 (183)
345 PRK11889 flhF flagellar biosyn 96.9 0.0058 1.3E-07 66.0 10.5 104 328-443 241-364 (436)
346 PRK06217 hypothetical protein; 96.9 0.00074 1.6E-08 65.6 3.4 31 330-360 3-33 (183)
347 cd00227 CPT Chloramphenicol (C 96.9 0.00072 1.6E-08 65.2 3.3 35 328-362 2-36 (175)
348 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0023 5E-08 64.9 7.2 28 324-351 17-44 (237)
349 PHA02774 E1; Provisional 96.9 0.0032 6.9E-08 70.7 8.6 33 328-360 434-467 (613)
350 PF10443 RNA12: RNA12 protein; 96.9 0.06 1.3E-06 58.6 17.9 47 433-481 185-232 (431)
351 KOG0477 DNA replication licens 96.9 0.0031 6.7E-08 70.3 8.1 63 295-358 450-512 (854)
352 PRK13764 ATPase; Provisional 96.8 0.0017 3.8E-08 73.9 6.5 70 327-397 256-334 (602)
353 TIGR02533 type_II_gspE general 96.8 0.0034 7.4E-08 70.3 8.7 95 290-398 218-322 (486)
354 cd01130 VirB11-like_ATPase Typ 96.8 0.0022 4.7E-08 62.5 6.1 72 326-397 23-110 (186)
355 PTZ00202 tuzin; Provisional 96.8 0.022 4.7E-07 62.2 13.9 178 293-509 261-458 (550)
356 PRK13948 shikimate kinase; Pro 96.8 0.0011 2.5E-08 64.4 4.0 35 326-360 8-42 (182)
357 PRK06547 hypothetical protein; 96.8 0.0012 2.5E-08 63.8 4.0 35 326-360 13-47 (172)
358 cd02020 CMPK Cytidine monophos 96.8 0.00096 2.1E-08 61.6 3.2 30 331-360 2-31 (147)
359 PTZ00088 adenylate kinase 1; P 96.8 0.0012 2.6E-08 66.7 4.1 32 328-359 6-37 (229)
360 cd01122 GP4d_helicase GP4d_hel 96.8 0.0031 6.8E-08 64.9 7.3 37 324-360 26-66 (271)
361 PRK13833 conjugal transfer pro 96.8 0.0047 1E-07 65.5 8.6 70 327-396 143-224 (323)
362 PF06309 Torsin: Torsin; Inte 96.8 0.0015 3.2E-08 59.4 4.2 53 294-352 25-77 (127)
363 PF04665 Pox_A32: Poxvirus A32 96.8 0.007 1.5E-07 61.4 9.5 132 327-477 12-169 (241)
364 cd01428 ADK Adenylate kinase ( 96.8 0.00097 2.1E-08 64.8 3.3 33 331-365 2-34 (194)
365 PRK14530 adenylate kinase; Pro 96.8 0.0011 2.3E-08 66.2 3.6 31 329-359 4-34 (215)
366 cd02021 GntK Gluconate kinase 96.8 0.00098 2.1E-08 62.2 3.1 27 331-357 2-28 (150)
367 TIGR02525 plasmid_TraJ plasmid 96.8 0.0026 5.7E-08 68.7 6.7 71 328-398 149-236 (372)
368 PRK06762 hypothetical protein; 96.7 0.00096 2.1E-08 63.5 3.0 34 328-361 2-35 (166)
369 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0041 8.8E-08 62.1 7.5 22 329-350 30-51 (213)
370 TIGR00767 rho transcription te 96.7 0.0056 1.2E-07 66.3 8.8 28 326-353 166-193 (415)
371 PLN02200 adenylate kinase fami 96.7 0.0014 3E-08 66.5 3.9 39 326-366 41-79 (234)
372 PF01745 IPT: Isopentenyl tran 96.7 0.0032 6.9E-08 62.2 6.2 137 330-481 3-142 (233)
373 COG1102 Cmk Cytidylate kinase 96.7 0.0011 2.4E-08 62.4 2.9 28 331-358 3-30 (179)
374 TIGR01313 therm_gnt_kin carboh 96.7 0.0011 2.4E-08 62.8 3.0 27 331-357 1-27 (163)
375 COG0703 AroK Shikimate kinase 96.7 0.0012 2.5E-08 63.3 3.0 49 329-382 3-51 (172)
376 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0024 5.2E-08 61.9 5.3 73 325-398 22-100 (177)
377 PRK05057 aroK shikimate kinase 96.7 0.0015 3.4E-08 62.9 3.9 33 328-360 4-36 (172)
378 cd00046 DEXDc DEAD-like helica 96.7 0.0035 7.5E-08 56.0 6.0 24 329-352 1-24 (144)
379 COG4088 Predicted nucleotide k 96.7 0.0032 7E-08 61.6 6.0 25 331-355 4-28 (261)
380 PRK10436 hypothetical protein; 96.7 0.0052 1.1E-07 68.3 8.5 94 290-397 194-297 (462)
381 PF00448 SRP54: SRP54-type pro 96.7 0.004 8.6E-08 61.4 6.7 108 328-447 1-131 (196)
382 cd03238 ABC_UvrA The excision 96.7 0.004 8.7E-08 60.3 6.6 27 324-350 17-43 (176)
383 COG5245 DYN1 Dynein, heavy cha 96.6 0.0046 1E-07 74.5 8.0 183 291-483 1452-1663(3164)
384 COG4650 RtcR Sigma54-dependent 96.6 0.0021 4.6E-08 65.7 4.7 73 324-400 204-295 (531)
385 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0061 1.3E-07 62.8 8.1 28 324-351 32-59 (259)
386 TIGR02538 type_IV_pilB type IV 96.6 0.0058 1.2E-07 69.9 8.7 94 291-398 293-396 (564)
387 PRK03731 aroL shikimate kinase 96.6 0.0016 3.5E-08 62.2 3.6 32 329-360 3-34 (171)
388 TIGR02788 VirB11 P-type DNA tr 96.6 0.0034 7.3E-08 66.3 6.3 74 324-397 140-228 (308)
389 TIGR02688 conserved hypothetic 96.6 0.0022 4.7E-08 69.7 4.9 97 327-442 208-314 (449)
390 cd03216 ABC_Carb_Monos_I This 96.6 0.0019 4.1E-08 61.6 4.0 107 324-444 22-143 (163)
391 PRK14527 adenylate kinase; Pro 96.6 0.0016 3.6E-08 63.6 3.6 32 327-358 5-36 (191)
392 PRK13946 shikimate kinase; Pro 96.6 0.0016 3.4E-08 63.4 3.4 33 328-360 10-42 (184)
393 PRK13900 type IV secretion sys 96.6 0.0026 5.7E-08 67.8 5.3 71 327-397 159-245 (332)
394 PRK14528 adenylate kinase; Pro 96.6 0.0017 3.7E-08 63.4 3.5 31 329-359 2-32 (186)
395 PRK08154 anaerobic benzoate ca 96.6 0.002 4.2E-08 68.1 4.2 36 325-360 130-165 (309)
396 TIGR00064 ftsY signal recognit 96.6 0.011 2.4E-07 61.3 9.7 27 326-352 70-96 (272)
397 PRK13808 adenylate kinase; Pro 96.6 0.0048 1E-07 65.5 7.0 34 330-365 2-35 (333)
398 COG0563 Adk Adenylate kinase a 96.6 0.0018 3.9E-08 62.9 3.5 33 330-364 2-34 (178)
399 PRK04841 transcriptional regul 96.6 0.012 2.7E-07 70.8 11.6 153 328-500 32-219 (903)
400 cd03243 ABC_MutS_homologs The 96.6 0.0044 9.5E-08 61.2 6.3 25 326-350 27-51 (202)
401 PRK12726 flagellar biosynthesi 96.5 0.015 3.3E-07 62.6 10.5 52 298-352 179-230 (407)
402 PRK05800 cobU adenosylcobinami 96.5 0.01 2.2E-07 57.1 8.5 95 330-427 3-114 (170)
403 cd00984 DnaB_C DnaB helicase C 96.5 0.0025 5.5E-08 64.4 4.6 37 324-360 9-49 (242)
404 KOG0737 AAA+-type ATPase [Post 96.5 0.00094 2E-08 70.4 1.4 70 209-279 281-362 (386)
405 PRK06581 DNA polymerase III su 96.5 0.095 2.1E-06 53.0 15.3 213 328-585 15-245 (263)
406 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0019 4.2E-08 62.3 3.3 29 329-357 4-32 (188)
407 COG1936 Predicted nucleotide k 96.5 0.0018 3.9E-08 61.7 2.8 30 330-360 2-31 (180)
408 PRK02496 adk adenylate kinase; 96.5 0.002 4.3E-08 62.5 3.2 30 330-359 3-32 (184)
409 PRK13894 conjugal transfer ATP 96.5 0.0051 1.1E-07 65.2 6.6 71 327-397 147-229 (319)
410 cd03115 SRP The signal recogni 96.5 0.011 2.4E-07 56.6 8.4 32 331-362 3-37 (173)
411 PRK04040 adenylate kinase; Pro 96.5 0.0022 4.8E-08 62.8 3.5 30 328-357 2-33 (188)
412 COG5271 MDN1 AAA ATPase contai 96.5 0.0063 1.4E-07 74.0 7.7 133 329-479 889-1048(4600)
413 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0059 1.3E-07 62.3 6.8 32 331-362 2-36 (249)
414 TIGR01351 adk adenylate kinase 96.4 0.002 4.4E-08 64.0 3.1 33 331-365 2-34 (210)
415 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.006 1.3E-07 57.0 6.0 74 324-398 22-99 (144)
416 PF13238 AAA_18: AAA domain; P 96.4 0.0021 4.5E-08 57.7 2.8 22 331-352 1-22 (129)
417 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.0082 1.8E-07 64.7 7.6 71 327-397 133-222 (358)
418 cd03280 ABC_MutS2 MutS2 homolo 96.4 0.0067 1.4E-07 59.8 6.5 24 326-349 25-49 (200)
419 PRK13851 type IV secretion sys 96.4 0.0038 8.3E-08 66.8 5.0 73 325-397 159-246 (344)
420 KOG0479 DNA replication licens 96.4 0.018 4E-07 63.9 10.2 155 296-462 303-481 (818)
421 PRK00279 adk adenylate kinase; 96.4 0.0025 5.4E-08 63.6 3.4 34 330-365 2-35 (215)
422 cd00544 CobU Adenosylcobinamid 96.4 0.011 2.5E-07 56.8 7.7 71 331-403 2-89 (169)
423 PRK03992 proteasome-activating 96.4 0.0033 7.1E-08 68.6 4.5 60 206-282 319-378 (389)
424 PRK10416 signal recognition pa 96.4 0.016 3.4E-07 61.5 9.4 27 326-352 112-138 (318)
425 COG1126 GlnQ ABC-type polar am 96.4 0.0079 1.7E-07 59.5 6.5 26 325-350 25-50 (240)
426 PRK04301 radA DNA repair and r 96.3 0.0057 1.2E-07 64.8 6.0 40 324-363 98-146 (317)
427 PRK06696 uridine kinase; Valid 96.3 0.0043 9.4E-08 62.3 4.8 39 327-365 21-62 (223)
428 PF02562 PhoH: PhoH-like prote 96.3 0.0087 1.9E-07 59.3 6.6 24 329-352 20-43 (205)
429 PF07693 KAP_NTPase: KAP famil 96.3 0.022 4.9E-07 60.0 10.2 30 326-355 18-47 (325)
430 COG2804 PulE Type II secretory 96.3 0.012 2.6E-07 64.9 8.2 95 290-398 234-338 (500)
431 TIGR02236 recomb_radA DNA repa 96.3 0.0068 1.5E-07 64.0 6.1 40 324-363 91-139 (310)
432 TIGR02238 recomb_DMC1 meiotic 96.3 0.0092 2E-07 63.1 7.1 27 324-350 92-118 (313)
433 PF13245 AAA_19: Part of AAA d 96.3 0.005 1.1E-07 51.1 4.0 24 329-352 11-35 (76)
434 PRK04328 hypothetical protein; 96.3 0.0097 2.1E-07 60.9 7.0 28 324-351 19-46 (249)
435 PRK12724 flagellar biosynthesi 96.3 0.014 3E-07 63.7 8.5 26 327-352 222-247 (432)
436 COG1136 SalX ABC-type antimicr 96.3 0.0089 1.9E-07 59.9 6.5 28 324-351 27-54 (226)
437 PF09848 DUF2075: Uncharacteri 96.3 0.0049 1.1E-07 66.3 5.0 23 330-352 3-25 (352)
438 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.0043 9.3E-08 58.5 4.0 30 324-353 21-50 (157)
439 PF00406 ADK: Adenylate kinase 96.2 0.0028 6E-08 59.4 2.6 33 333-367 1-33 (151)
440 PRK13695 putative NTPase; Prov 96.2 0.023 4.9E-07 54.6 9.0 23 330-352 2-24 (174)
441 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.011 2.4E-07 59.2 7.0 38 324-361 12-52 (224)
442 PTZ00454 26S protease regulato 96.2 0.0032 7E-08 68.7 3.4 49 212-277 339-387 (398)
443 cd03214 ABC_Iron-Siderophores_ 96.2 0.0061 1.3E-07 59.0 4.9 29 324-352 21-49 (180)
444 PLN02674 adenylate kinase 96.2 0.0039 8.4E-08 63.5 3.5 37 327-365 30-66 (244)
445 cd02019 NK Nucleoside/nucleoti 96.2 0.0043 9.3E-08 50.3 3.1 22 331-352 2-23 (69)
446 PRK05703 flhF flagellar biosyn 96.2 0.02 4.3E-07 63.2 9.2 26 327-352 220-245 (424)
447 cd03228 ABCC_MRP_Like The MRP 96.2 0.012 2.6E-07 56.4 6.7 29 324-352 24-52 (171)
448 smart00534 MUTSac ATPase domai 96.2 0.013 2.8E-07 57.1 7.0 19 331-349 2-20 (185)
449 KOG0652 26S proteasome regulat 96.2 0.0095 2.1E-07 60.1 6.0 44 216-276 369-412 (424)
450 TIGR03499 FlhF flagellar biosy 96.1 0.013 2.7E-07 61.2 7.2 26 327-352 193-218 (282)
451 PLN03187 meiotic recombination 96.1 0.013 2.9E-07 62.6 7.4 27 324-350 122-148 (344)
452 PF13086 AAA_11: AAA domain; P 96.1 0.0065 1.4E-07 60.1 4.8 23 330-352 19-41 (236)
453 PRK04182 cytidylate kinase; Pr 96.1 0.0039 8.6E-08 59.6 3.1 29 330-358 2-30 (180)
454 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.015 3.2E-07 58.5 7.2 25 326-350 29-53 (222)
455 PRK12608 transcription termina 96.1 0.015 3.3E-07 62.5 7.6 27 328-354 133-159 (380)
456 PF13521 AAA_28: AAA domain; P 96.1 0.0045 9.7E-08 58.7 3.2 26 331-357 2-27 (163)
457 PF05272 VirE: Virulence-assoc 96.1 0.013 2.8E-07 57.9 6.5 110 324-463 48-168 (198)
458 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0053 1.2E-07 56.6 3.5 30 326-355 20-49 (133)
459 cd03223 ABCD_peroxisomal_ALDP 96.1 0.0098 2.1E-07 56.8 5.5 29 324-352 23-51 (166)
460 PRK01184 hypothetical protein; 96.1 0.0043 9.2E-08 60.1 3.0 29 330-359 3-31 (184)
461 TIGR02655 circ_KaiC circadian 96.1 0.012 2.7E-07 66.0 7.1 78 324-401 259-367 (484)
462 PTZ00035 Rad51 protein; Provis 96.0 0.01 2.2E-07 63.5 6.0 28 324-351 114-141 (337)
463 cd03246 ABCC_Protease_Secretio 96.0 0.014 3E-07 56.0 6.4 28 325-352 25-52 (173)
464 cd03227 ABC_Class2 ABC-type Cl 96.0 0.017 3.6E-07 55.0 6.9 25 328-352 21-45 (162)
465 TIGR02239 recomb_RAD51 DNA rep 96.0 0.0077 1.7E-07 63.8 5.0 27 324-350 92-118 (316)
466 COG2805 PilT Tfp pilus assembl 96.0 0.0078 1.7E-07 62.2 4.7 73 326-398 123-209 (353)
467 KOG0728 26S proteasome regulat 96.0 0.0042 9E-08 62.3 2.7 48 212-276 341-388 (404)
468 PRK14526 adenylate kinase; Pro 96.0 0.0053 1.1E-07 61.2 3.4 34 330-365 2-35 (211)
469 COG1066 Sms Predicted ATP-depe 96.0 0.022 4.7E-07 61.3 8.1 80 324-403 89-184 (456)
470 PF01443 Viral_helicase1: Vira 96.0 0.0042 9.1E-08 62.2 2.7 22 331-352 1-22 (234)
471 TIGR02173 cyt_kin_arch cytidyl 96.0 0.005 1.1E-07 58.5 3.1 28 331-358 3-30 (171)
472 PRK08233 hypothetical protein; 96.0 0.0057 1.2E-07 58.7 3.5 31 329-359 4-35 (182)
473 PF00154 RecA: recA bacterial 96.0 0.012 2.6E-07 62.2 6.1 122 324-445 49-192 (322)
474 cd02027 APSK Adenosine 5'-phos 96.0 0.0055 1.2E-07 57.6 3.2 31 331-361 2-35 (149)
475 PF13479 AAA_24: AAA domain 96.0 0.011 2.3E-07 59.0 5.4 69 328-399 3-80 (213)
476 TIGR01448 recD_rel helicase, p 96.0 0.024 5.3E-07 66.6 9.2 98 328-442 338-454 (720)
477 PLN03186 DNA repair protein RA 96.0 0.0094 2E-07 63.7 5.3 117 324-441 119-271 (342)
478 PHA02530 pseT polynucleotide k 95.9 0.0053 1.2E-07 64.2 3.3 34 329-363 3-36 (300)
479 PF08298 AAA_PrkA: PrkA AAA do 95.9 0.012 2.5E-07 62.6 5.8 58 294-359 61-120 (358)
480 PRK05541 adenylylsulfate kinas 95.9 0.0064 1.4E-07 58.5 3.6 29 326-354 5-33 (176)
481 KOG0482 DNA replication licens 95.9 0.024 5.2E-07 62.1 8.2 168 295-476 343-537 (721)
482 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.021 4.6E-07 56.6 7.2 24 327-350 28-51 (204)
483 PF08303 tRNA_lig_kinase: tRNA 95.9 0.032 6.9E-07 53.0 7.7 129 334-481 5-146 (168)
484 PF13481 AAA_25: AAA domain; P 95.9 0.0069 1.5E-07 58.8 3.5 26 327-352 31-56 (193)
485 PF10236 DAP3: Mitochondrial r 95.8 0.12 2.7E-06 54.5 13.1 98 387-484 156-283 (309)
486 COG4608 AppF ABC-type oligopep 95.8 0.0091 2E-07 61.0 4.3 77 324-400 35-140 (268)
487 TIGR00152 dephospho-CoA kinase 95.8 0.0068 1.5E-07 59.1 3.3 29 331-359 2-30 (188)
488 PRK12338 hypothetical protein; 95.8 0.0074 1.6E-07 63.7 3.6 30 327-356 3-32 (319)
489 KOG0729 26S proteasome regulat 95.8 0.0078 1.7E-07 60.9 3.6 45 216-277 375-419 (435)
490 PLN02459 probable adenylate ki 95.8 0.0085 1.8E-07 61.5 3.9 35 329-365 30-64 (261)
491 PRK09302 circadian clock prote 95.8 0.033 7.1E-07 63.0 8.9 28 324-351 27-54 (509)
492 PRK08099 bifunctional DNA-bind 95.7 0.0097 2.1E-07 65.1 4.4 31 328-358 219-249 (399)
493 PRK10078 ribose 1,5-bisphospho 95.7 0.0077 1.7E-07 58.6 3.3 28 329-356 3-30 (186)
494 PRK14529 adenylate kinase; Pro 95.7 0.0073 1.6E-07 60.7 3.1 36 330-367 2-37 (223)
495 PRK12339 2-phosphoglycerate ki 95.7 0.0082 1.8E-07 59.2 3.4 29 328-356 3-31 (197)
496 smart00487 DEXDc DEAD-like hel 95.7 0.035 7.6E-07 52.7 7.7 24 329-352 25-49 (201)
497 PF01583 APS_kinase: Adenylyls 95.7 0.0089 1.9E-07 56.6 3.3 38 328-365 2-42 (156)
498 TIGR02768 TraA_Ti Ti-type conj 95.7 0.025 5.5E-07 66.8 7.7 72 328-399 368-451 (744)
499 COG2274 SunT ABC-type bacterio 95.7 0.022 4.7E-07 66.6 7.0 28 325-352 496-523 (709)
500 PRK00889 adenylylsulfate kinas 95.6 0.011 2.5E-07 56.6 3.9 35 327-361 3-40 (175)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-83 Score=695.79 Aligned_cols=505 Identities=57% Similarity=0.949 Sum_probs=468.2
Q ss_pred CcchhHHhhhccCCCeeEeccccCCCCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeeeHhhh
Q 007053 15 RDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVR 94 (620)
Q Consensus 15 ~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r 94 (620)
.+.+++|+..+..+|.+.|.+ .++..+.+-+++..|.+++++.| |.+.|+++...++.+...+. ....+++....|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 468899999999999999988 44445588999999999999999 99999987666554433333 778999999999
Q ss_pred cccccccCCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeC
Q 007053 95 SNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD 174 (620)
Q Consensus 95 ~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~ 174 (620)
.|+.+..|+.|.+.++..++++.++.+.|+.++.+++....++.+.+.++....+|+..||++ ...+.+.|+++.+.
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999998888999999999999998888888899999999999999999999998 45567899999999
Q ss_pred CCCceeecCCceEeeCCCccccccccccccCCcccccchhh---------------------------------------
Q 007053 175 PPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRK--------------------------------------- 215 (620)
Q Consensus 175 p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ig~l~~--------------------------------------- 215 (620)
|.. .++++|.+.+.++++....++ ...++ .++||++.
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 987 888999999999998877666 46788 89999988
Q ss_pred --------------------------------------------------------------------------------
Q 007053 216 -------------------------------------------------------------------------------- 215 (620)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (620)
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqllt 310 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLT 310 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------hhccccCcchhhH
Q 007053 216 -------------------------------------------------------------------IAKDTHGYVGADL 228 (620)
Q Consensus 216 -------------------------------------------------------------------lA~~t~gf~GaDl 228 (620)
+|..||||+||||
T Consensus 311 L~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL 390 (693)
T KOG0730|consen 311 LLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADL 390 (693)
T ss_pred HHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHH
Confidence 8999999999999
Q ss_pred HHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccccccccchHHHHHHHHH
Q 007053 229 AALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQE 308 (620)
Q Consensus 229 ~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e 308 (620)
++||++|+++++|+ ++++|..|+..+.||++|+..++.|+++|+||||++++|++|++
T Consensus 391 ~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~ 448 (693)
T KOG0730|consen 391 AALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQ 448 (693)
T ss_pred HHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHH
Confidence 99999999999986 56789999999999999999999999999999999999999999
Q ss_pred hhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCC
Q 007053 309 TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP 388 (620)
Q Consensus 309 ~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p 388 (620)
.+.||++||+.|.++|+.||+|||||||||||||++|+++|++++++|++|++++|+++|+|++|+.++++|++|++.+|
T Consensus 449 ~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP 528 (693)
T KOG0730|consen 449 AVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAP 528 (693)
T ss_pred HHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChh
Q 007053 389 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 468 (620)
Q Consensus 389 ~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~ 468 (620)
|||||||||+++..|+.. .+++.+|++++||++|||+...++|+|||+||+|+.||+|++||||||+.|++|+||.+
T Consensus 529 ~IiFfDEiDsi~~~R~g~---~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGS---SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred eEEehhhHHhHhhccCCC---ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 999999999999999743 23789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhh
Q 007053 469 SRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEI 548 (620)
Q Consensus 469 eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 548 (620)
.|.+||+.+++++++..++|+++||+.|+||||+||.++|++|++.|+++.++ ...|
T Consensus 606 aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-----------------------a~~i 662 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-----------------------ATEI 662 (693)
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-----------------------cccc
Confidence 99999999999999999999999999999999999999999999999999754 3469
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 007053 549 KAVHFEESMKYARRSVSDADIRKYQAFAQT 578 (620)
Q Consensus 549 t~~df~~Al~~~~psvs~~di~~~e~~k~~ 578 (620)
+.+||++|++.++|+++..++..|+++++.
T Consensus 663 ~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred cHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 999999999999999999999999999864
No 2
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.8e-74 Score=665.01 Aligned_cols=535 Identities=45% Similarity=0.745 Sum_probs=472.4
Q ss_pred eeEeccccC-C-CCceEEeChhhHhhhcccCCCeEEEe-cccccceEEEEecC--CCCCCCceeeeHhhhcccccccCCe
Q 007053 30 RLVVDEAIN-D-DNSVVVLHPDTMEKLQFFRGDTILIK-GKKRKDTVCIALAD--DTCEEPKIRMNKVVRSNLRVRLGDV 104 (620)
Q Consensus 30 ~~~v~~~~~-~-~~~~~~~~~~~~~~l~~~~gd~v~i~-g~~~~~~~~~~~~~--~~~~~~~i~~~~~~r~n~~~~~gd~ 104 (620)
.++|.++.+ + |+|++||+|+.|.+||+.+||+|.|+ |++ .++|+||+. ++.+.+.|+||+.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 467888865 4 99999999999999999999999999 777 578899974 5789999999999999999999999
Q ss_pred EEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCCceeecCC
Q 007053 105 VSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184 (620)
Q Consensus 105 v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~~~~~~~~ 184 (620)
|+|++ ..+++|++|+++|..... .+..+..+++.+|. ++|+..||.|.+...+..+.|.|+++.|.+.+.++..
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVER-AEVKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEee-cCCCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 99999 578999999999974321 12345688899886 5899999999998777789999999999999999999
Q ss_pred ceEeeCCCccccccccccccCCcccccchhh-------------------------------------------------
Q 007053 185 TEIFCEGEPVRREDENRLDEVGYDDVGGVRK------------------------------------------------- 215 (620)
Q Consensus 185 t~~~~~~~~~~~~~~~~~~~~~~~~ig~l~~------------------------------------------------- 215 (620)
|.+.+..++...........++|+|+||+++
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 9999876665433233456789999999876
Q ss_pred --------------------------------------------------------------------------------
Q 007053 216 -------------------------------------------------------------------------------- 215 (620)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (620)
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence
Q ss_pred ----------------------------------------------------------hhccccCcchhhHHHHhHHHHH
Q 007053 216 ----------------------------------------------------------IAKDTHGYVGADLAALCTEAAL 237 (620)
Q Consensus 216 ----------------------------------------------------------lA~~t~gf~GaDl~~l~~eAa~ 237 (620)
+|+.|+||+|+||.+||++|++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999
Q ss_pred HHHHhhcc--ccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccccccccchHHHHHHHHHhhcCcCC
Q 007053 238 QCIREKMD--VIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVE 315 (620)
Q Consensus 238 ~alrr~~~--~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~ 315 (620)
.+++|.++ .+++....++.+.+..+.++++||..|+..+.|+..++...+.|.++|++++|++.++++|++.+.+|+.
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 99999877 4455556677777788899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeecc
Q 007053 316 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 395 (620)
Q Consensus 316 ~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDE 395 (620)
+++.|.++|+.+++++|||||||||||++|+++|++++.+|+.+++++++++|+|+++..++.+|..|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHH
Q 007053 396 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFK 475 (620)
Q Consensus 396 iD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~ 475 (620)
+|.|++.++.. .......+++++||.+|+++....+++||+|||+|+.||++++|||||++.+++++|+.++|.+||+
T Consensus 555 id~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 555 IDAIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 99999887643 2234678999999999999988889999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHH
Q 007053 476 ACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEE 555 (620)
Q Consensus 476 ~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~ 555 (620)
.++++.++..++++..||+.|+||||+||.++|++|++.|+++.+......... . ..........++.+||.+
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~--~-----~~~~~~~~~~i~~~~f~~ 705 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE--V-----GEEEFLKDLKVEMRHFLE 705 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh--c-----ccccccccCcccHHHHHH
Confidence 999999999999999999999999999999999999999999875432100000 0 000011234799999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHhh
Q 007053 556 SMKYARRSVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 556 Al~~~~psvs~~di~~~e~~k~~l~~ 581 (620)
|+++++|+++.+++..|++|++++..
T Consensus 706 al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 706 ALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999864
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-71 Score=587.25 Aligned_cols=358 Identities=46% Similarity=0.806 Sum_probs=321.2
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhcccccc----------------CC------------------------
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL----------------ED------------------------ 251 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~----------------~~------------------------ 251 (620)
..++||+.|+|||||||.+||++|++.|++|.+++... +.
T Consensus 384 d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~ 463 (802)
T KOG0733|consen 384 DFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDA 463 (802)
T ss_pred CHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHH
Confidence 45789999999999999999999999999999874321 00
Q ss_pred -----ccccHHHHhhhccChHHHHHhhccCCccccccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCC
Q 007053 252 -----ETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS 326 (620)
Q Consensus 252 -----~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~ 326 (620)
+.+..+.++.+.|+.+||..|+..++||+.||.+..+|+++|+|||++++++.+|..++.+|+++|+.|+.+|+.
T Consensus 464 i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~ 543 (802)
T KOG0733|consen 464 ILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID 543 (802)
T ss_pred HHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC
Confidence 112235566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCC
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 406 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~ 406 (620)
+|.|||||||||||||+||+|+|++.++||++|.+++|+++|+|++|..+|++|.+|+.++||||||||+|+|++.|+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~ 623 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE 623 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhc--cCCCC
Q 007053 407 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR--KSPVS 484 (620)
Q Consensus 407 ~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~--~~~l~ 484 (620)
. +....|+++|||++|||+..+.+|+|||+||+|+.+|||++||||||..+++++|+.++|..||+.+++ +.++.
T Consensus 624 ~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~ 700 (802)
T KOG0733|consen 624 G---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLS 700 (802)
T ss_pred C---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCC
Confidence 3 557899999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred CCcChHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 485 KDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 485 ~dv~l~~LA~~t~--G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
.|+++++||..+. ||||+||..||++|...|+++.+..... +..... ..-....++..||++|+++++|
T Consensus 701 ~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~-------~~~~~~--~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 701 SDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS-------SEDDVT--VRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred cccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc-------cCcccc--eeeeeeeecHHHHHHHHHhcCC
Confidence 9999999999876 9999999999999999999998652210 000000 0000335899999999999999
Q ss_pred cCChHHHHHHHHHHHHHhh
Q 007053 563 SVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 563 svs~~di~~~e~~k~~l~~ 581 (620)
||+..|...|+..++.+.-
T Consensus 772 Sv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 772 SVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred CccHHHHHHHHHHhhhhcc
Confidence 9999999999998887643
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-58 Score=502.32 Aligned_cols=359 Identities=43% Similarity=0.755 Sum_probs=307.4
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhcccc---ccCCccccHHHHhhhccChHHHHHhhccCCcccccc-ceee
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVI---DLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE-TVVE 287 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~---~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~-~~~~ 287 (620)
.++.+|.+|.||+-+||.+|...+...+..|.-... .+..+.-.........++++||.+++.+++...... ....
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 344589999999999999999887555554443321 111111112223457899999999998765443222 3446
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
+|+|+|+||||++++|.++.+.+..|++||++|.. |+.+..|||||||||||||++|+|+|.++..+|++|.+++|+++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 89999999999999999999999999999999976 88888999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--CcceEEEEccCCCCCC
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRPDI 445 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--~~~~viVIatTn~~~~ 445 (620)
|+|++|+++|++|++||..+||||||||+|+|+|.|+.+ +++++.++|+++|||.+||++. +...|+||++|||||.
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 999999999999999999999999999999999999876 7788999999999999999998 4678999999999999
Q ss_pred CcccccCCCCCCceeeeeCC-ChhHHHHHHHHhhccCCCCCCcChHHHHhhcC-CCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007053 446 IDPALLRPGRLDQLIYIPLP-DEESRLQIFKACLRKSPVSKDVDLRALAKYTQ-GFSGADITEICQRACKYAIRENIEKD 523 (620)
Q Consensus 446 Ld~al~rpgRf~~~i~~~~P-~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~-G~sg~DL~~l~~~A~~~A~~~~i~~~ 523 (620)
|||+|+||||||+.+|++++ +.+.+..+|+...+++.++.++++.++|+.+. .|||+|+.+||..|++.|++|.+...
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988 56778899999999999999999999999885 79999999999999999999987643
Q ss_pred HHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Q 007053 524 IERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 580 (620)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~ 580 (620)
...... .+........|+++||-+|+++.+||++..++..||.++.+|.
T Consensus 904 e~g~~~--------~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 904 ESGTIS--------EEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhcccc--------ccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 221000 0112234567999999999999999999999999999999874
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-57 Score=458.44 Aligned_cols=254 Identities=48% Similarity=0.813 Sum_probs=242.6
Q ss_pred ceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 284 ~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
...+.|+++|+||||+++++++|+|.++.|+.+|++|.++|+.||+|||||||||||||+||+|+|++.++.|+.+.+++
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
|+.+|+|+..+.+|++|..|+.++||||||||||++..+|.....+......|.+-+||++|||+.+.+++-||++||++
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 99999999999999999999999999999999999999997765555567788999999999999999999999999999
Q ss_pred CCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007053 444 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 523 (620)
Q Consensus 444 ~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~ 523 (620)
+.|||||+||||||+.|+||+|+.+.|.+||+.|.+++.+..++|++.||+.|+||||+||+++|.+|.+.|+|+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~---- 376 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER---- 376 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 524 IERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
...||++||.+|.+++..
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHh
Confidence 346999999999998854
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-54 Score=461.28 Aligned_cols=302 Identities=38% Similarity=0.633 Sum_probs=267.3
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
..++++|.+|||++....+|.+++.. +.+|+.|..+|+.||+|||||||||||||+||+|+|++++.||+.|+++++++
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34578999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCc----ceEEEEccCCC
Q 007053 367 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK----KTVFIIGATNR 442 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~----~~viVIatTn~ 442 (620)
.+.|++|++++++|+.|+..+|||+||||||++.++|...+ -...+|++.|||+.||++... ..|+||++||+
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq---reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ---REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH---HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999987642 236789999999999998654 57999999999
Q ss_pred CCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007053 443 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 522 (620)
Q Consensus 443 ~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~ 522 (620)
|+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.+..++++..||+.|.||.|+||.+||.+|+..|++|.+..
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred HHHHHHHhc----------cCCc-------------ccc--------------cccccchhhhhHHHHHHHHHHHhhc--
Q 007053 523 DIERERRRS----------ENPE-------------AME--------------EDVEDEVAEIKAVHFEESMKYARRS-- 563 (620)
Q Consensus 523 ~~~~~~~~~----------~~~~-------------~~~--------------~~~~~~~~~vt~~df~~Al~~~~ps-- 563 (620)
...-..... +..+ ..+ +.+......|+.+||+.|+..++|+
T Consensus 419 ~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSak 498 (802)
T KOG0733|consen 419 SSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAK 498 (802)
T ss_pred ccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchh
Confidence 221000000 0000 000 0011123468999999999999965
Q ss_pred ---------CChHHHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 564 ---------VSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 564 ---------vs~~di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
|+|+|||++++++.+|...|-| |.||||.
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~--PiK~pd~ 536 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILA--PIKRPDL 536 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhh--hccCHHH
Confidence 9999999999999999999999 9999998
No 7
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-52 Score=451.72 Aligned_cols=334 Identities=43% Similarity=0.715 Sum_probs=294.0
Q ss_pred hhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccc-cccc
Q 007053 216 IAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPN-VNWE 294 (620)
Q Consensus 216 lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~-v~~~ 294 (620)
+|.+|.||...||..++..|...|++...... .. .++.++|.++|+...|.++|......+. +.|+
T Consensus 601 ls~~TEGy~~~DL~ifVeRai~~a~leris~~------------~k-lltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~ 667 (952)
T KOG0735|consen 601 LSVKTEGYLATDLVIFVERAIHEAFLERISNG------------PK-LLTKELFEKSLKDFVPLALRGIKLVKSTGIRWE 667 (952)
T ss_pred HHHhcCCccchhHHHHHHHHHHHHHHHHhccC------------cc-cchHHHHHHHHHhcChHHhhhccccccCCCCce
Confidence 79999999999999999999988885432210 11 5789999999999999999987665554 9999
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeecccccc
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA 374 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~ 374 (620)
||||+.++++.|.+.++||.++|.+|...+++.+.|||||||||||||+||.++|..++.+||++.+++|+++|+|.+|+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq 747 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQ 747 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCC
Q 007053 375 NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPG 454 (620)
Q Consensus 375 ~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpg 454 (620)
++|.+|.+|+..+||||||||+|+++|+|+.. +.+.++|+++|||++|||.....+|.|+|+|.||+.|||||+|||
T Consensus 748 ~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD---sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpG 824 (952)
T KOG0735|consen 748 NVRDLFERAQSAKPCILFFDEFDSIAPKRGHD---STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPG 824 (952)
T ss_pred HHHHHHHHhhccCCeEEEeccccccCcccCCC---CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCC
Confidence 99999999999999999999999999999764 467999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007053 455 RLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENP 534 (620)
Q Consensus 455 Rf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~ 534 (620)
|+|+.++.+.|+..+|.+||+.......+..++|++.+|..|+||||+||+.||..|.+.|+++.+.....
T Consensus 825 RlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~--------- 895 (952)
T KOG0735|consen 825 RLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDE--------- 895 (952)
T ss_pred ccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999998654210
Q ss_pred cccccccccchhhhhHHHHHHHH--HHHhhcCChHHHHHHHHHHHHHhh
Q 007053 535 EAMEEDVEDEVAEIKAVHFEESM--KYARRSVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 535 ~~~~~~~~~~~~~vt~~df~~Al--~~~~psvs~~di~~~e~~k~~l~~ 581 (620)
.+....++...+.... ..-+|+.+.-+-+.+.++..+++.
T Consensus 896 -------~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~ 937 (952)
T KOG0735|consen 896 -------EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLS 937 (952)
T ss_pred -------cccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcC
Confidence 0111123333333322 355678887777777777666653
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-50 Score=409.16 Aligned_cols=286 Identities=43% Similarity=0.703 Sum_probs=256.9
Q ss_pred ccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 282 RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 282 r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
+......|+++|+||.|++++|+.|+|.+..|+..|+.|+. ...|.++||++||||||||+||+|+|.+++..|+.|+.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 33455678999999999999999999999999999999987 45788999999999999999999999999999999999
Q ss_pred cceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCc----ceEEEE
Q 007053 362 PELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK----KTVFII 437 (620)
Q Consensus 362 ~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~----~~viVI 437 (620)
+.|.++|-|++|+.+|-+|+.|+..+|++|||||||+|+.+|+.. ......+|+-++||..|||+... ..|+|+
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 999999999999999999999999999999999999999998765 34568899999999999998542 359999
Q ss_pred ccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 007053 438 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 517 (620)
Q Consensus 438 atTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~ 517 (620)
|+||.|+.||+||+| ||...|++|+|+.+.|..+|+..++..++..+++++.||+.++||||+||.++|++|.+.++|
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mR 434 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMR 434 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Q 007053 518 ENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 580 (620)
Q Consensus 518 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~ 580 (620)
|.+......+...... ++....++.+||+.|+++++||++..|+..||+|.++|-
T Consensus 435 R~i~g~~~~ei~~lak--------E~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 435 RKIAGLTPREIRQLAK--------EEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred HHHhcCCcHHhhhhhh--------hccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence 9876432222111110 011256999999999999999999999999999999884
No 9
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-49 Score=436.67 Aligned_cols=316 Identities=50% Similarity=0.827 Sum_probs=292.9
Q ss_pred ccchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeecc
Q 007053 210 VGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVP 289 (620)
Q Consensus 210 ig~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p 289 (620)
-+.++.+|..|+||+|+|+..+|++|.+.+++|.+ ......+.++.++|..++..+.|+ ++.....+
T Consensus 171 ~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 237 (494)
T COG0464 171 PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDE 237 (494)
T ss_pred cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCcc--cccccCCC
Confidence 46788999999999999999999999999999875 112356788999999999999998 77888899
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 369 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~ 369 (620)
.++|+++||++..++.+++.+.+|+.+++.|.+.++.+++++|||||||||||+||+++|++++.+|+.+++++++++|+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCccc
Q 007053 370 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 449 (620)
Q Consensus 370 g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~a 449 (620)
|+++++++++|..|+..+||||||||+|++++.++.... +...+++++|+++|+++....+|+||++||+|+.+|++
T Consensus 318 Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHh
Confidence 999999999999999999999999999999998865422 23379999999999999999999999999999999999
Q ss_pred ccCCCCCCceeeeeCCChhHHHHHHHHhhccC--CCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 450 LLRPGRLDQLIYIPLPDEESRLQIFKACLRKS--PVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 450 l~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~--~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
++|||||+..++|++|+.++|.+||+.+++.. .+..++++..+++.|+||+|+||..+|++|.+.++++..
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------- 467 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------- 467 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------
Confidence 99999999999999999999999999999844 356899999999999999999999999999999998863
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCC
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS 565 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs 565 (620)
...++.+||.+|++.++|+++
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC
Confidence 236999999999999999998
No 10
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9.2e-47 Score=368.63 Aligned_cols=308 Identities=36% Similarity=0.636 Sum_probs=268.6
Q ss_pred cchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCCceeecCCceEeeCCCccccccccccccCCcccccc
Q 007053 133 GNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGG 212 (620)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ig~ 212 (620)
...|..|.|.+|. |-.|++||.+....+-.+..|+|+++.|++..+++..|.+.+. .|- +
T Consensus 50 ~~~F~~YArdQW~--Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~-~~~----~------------- 109 (368)
T COG1223 50 PEVFNIYARDQWL--GEVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLE-TPR----E------------- 109 (368)
T ss_pred HHHHHHHHHHhhc--ceeeecCceEeecccccccceeEEEEeCCCCceecceEEEEec-Ccc----h-------------
Confidence 4578999999997 5779999999998888899999999999999999988877764 110 0
Q ss_pred hhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccc
Q 007053 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN 292 (620)
Q Consensus 213 l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~ 292 (620)
+.....++++
T Consensus 110 ----------------------------------------------------------------------~~~e~~~~it 119 (368)
T COG1223 110 ----------------------------------------------------------------------EDREIISDIT 119 (368)
T ss_pred ----------------------------------------------------------------------hhhhhhcccc
Confidence 0011346789
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeecccc
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 372 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~s 372 (620)
++|+.|++++|+..+-++.+ |..|+.|..| .|++||||||||||||++|+|+|++...+|+.+++.+|++.++|+.
T Consensus 120 ~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdg 195 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDG 195 (368)
T ss_pred HhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhH
Confidence 99999999999999877776 8899988765 6899999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccC
Q 007053 373 EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR 452 (620)
Q Consensus 373 e~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~r 452 (620)
.+.++++|+.|++.+|||+||||+|+++-.|..+ +.-+....++|.||++||++..+.+|+.||+||+|+.||+++++
T Consensus 196 ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs 273 (368)
T COG1223 196 ARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS 273 (368)
T ss_pred HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh
Confidence 9999999999999999999999999999877543 22345678999999999999999999999999999999999998
Q ss_pred CCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 007053 453 PGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE-ICQRACKYAIRENIEKDIERERRRS 531 (620)
Q Consensus 453 pgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~-l~~~A~~~A~~~~i~~~~~~~~~~~ 531 (620)
||...|+|.+|+.++|..|++.+.+.+|+.-+.++..+++.|.||||+||.. +++.|+..|+.+.
T Consensus 274 --RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed------------ 339 (368)
T COG1223 274 --RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED------------ 339 (368)
T ss_pred --hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc------------
Confidence 9999999999999999999999999999999999999999999999999875 3444444444432
Q ss_pred cCCcccccccccchhhhhHHHHHHHHHHHhhc
Q 007053 532 ENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 563 (620)
Q Consensus 532 ~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ps 563 (620)
...|+.+||+.|+++.+++
T Consensus 340 -------------~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 340 -------------REKVEREDIEKALKKERKR 358 (368)
T ss_pred -------------hhhhhHHHHHHHHHhhccc
Confidence 3469999999999987654
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=357.05 Aligned_cols=256 Identities=43% Similarity=0.745 Sum_probs=240.9
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
...+|+.+|+.+||++.+++++++.++.|.+||++|..+|+..|+|+|||||||||||+||+++|+...+.|+.+++++|
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
+.+|+|+....++++|-.|+.++|+|||+||||++...|..+.+...+...|.+-+||+.+|++....++-||.+||+.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 99999999999999999999999999999999999988876655555677888889999999999999999999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.|||+++||||+|+.|+||+|+.+.|.+||+.|.+++.+...+++..+|+...|.||+++..+|.+|.++|+|+-
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----- 372 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----- 372 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCC
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS 565 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs 565 (620)
...+|.+||+-|..++-..-+
T Consensus 373 --------------------rvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 373 --------------------RVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred --------------------hccccHHHHHHHHHHHHhccc
Confidence 346999999999988755443
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=352.78 Aligned_cols=251 Identities=43% Similarity=0.735 Sum_probs=237.7
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
..+.|+++|.||||++-+|+++++.++.|+.+.+++++.|+.||+|+|+|||||||||+|++|+|+...+.||.+.++++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
+.+|.|+....++.+|+.|+.++|+||||||+|+++.+|-..+........|++-+||+.|||+....++-||.+||+.+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 99999999999999999999999999999999999999866555555677889999999999999999999999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.|||+++||||+|+.|+||+|+..++.-+|...+.++.+..++|++.+..+.+..|++||.++|++|.+.|+|+.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n----- 380 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN----- 380 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...+...||++|.+..
T Consensus 381 --------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 --------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred --------------------ceeeeHHHHHHHHHhh
Confidence 2358889999998765
No 13
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-44 Score=352.78 Aligned_cols=261 Identities=39% Similarity=0.696 Sum_probs=242.6
Q ss_pred cCCccccccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 275 TSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 275 ~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
++.||..-....+.|+++|.|+||..++++.|++.++.|+.+|+.|-.+|+.||+|||+|||||||||++|||+|+..++
T Consensus 158 kidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 158 KIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred CCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 45666655667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceE
Q 007053 355 NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 434 (620)
Q Consensus 355 ~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~v 434 (620)
.||.+-+++|+.+|+|+....++++|+.|+..+.|||||||||.+.+.|-....+......|.+-+|++.+|++.+.+++
T Consensus 238 cfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgni 317 (435)
T KOG0729|consen 238 CFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 317 (435)
T ss_pred eEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCe
Confidence 99999999999999999999999999999999999999999999998875543334456778888899999999999999
Q ss_pred EEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHH
Q 007053 435 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKY 514 (620)
Q Consensus 435 iVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~ 514 (620)
-|+.+||+|+.|||+|+||||+|+.++|.+|+.+.|..||+.|.+.+.+..++-++.||..+..-+|++|..+|.+|.+.
T Consensus 318 kvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmf 397 (435)
T KOG0729|consen 318 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMF 397 (435)
T ss_pred EEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 515 AIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 515 A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
|++.- ....|..||-+|+.++
T Consensus 398 airar-------------------------rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 398 AIRAR-------------------------RKVATEKDFLDAVNKV 418 (435)
T ss_pred HHHHH-------------------------hhhhhHHHHHHHHHHH
Confidence 99864 2357899999999887
No 14
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-44 Score=358.89 Aligned_cols=292 Identities=34% Similarity=0.633 Sum_probs=251.4
Q ss_pred ceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 284 ~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
...+.|++.|+|+.|++.+++.|+|.+..|++.|++|.. +..|.++|||||||||||+.||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456789999999999999999999999999999999976 5567899999999999999999999999999999999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC-cceEEEEccCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNR 442 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~-~~~viVIatTn~ 442 (620)
|+++|.|++++.++++|+.|+.++|+||||||||++++.|+.+. +...+|+-.+||..|.|+.. ..+++|+++||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999998887653 45789999999999999854 458999999999
Q ss_pred CCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCC-CCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 443 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 443 ~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l-~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
|+.||.+++| ||+..||+|+|+...|..+|+.++...+. ..+.|+.+|+++|+||||+||.-+++.|.+..+|+.-.
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 99999999999999999999999977653 45778999999999999999999999999999998644
Q ss_pred HHHHHHHHhccCCc-----cccc-------------c---cccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Q 007053 522 KDIERERRRSENPE-----AMEE-------------D---VEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 580 (620)
Q Consensus 522 ~~~~~~~~~~~~~~-----~~~~-------------~---~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~ 580 (620)
...........+.. .... + ..--...+|+.||..++...+|.|+.+|+...+.|-+.|-
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 32221111100000 0000 0 0011346999999999999999999999999999998885
Q ss_pred h
Q 007053 581 Q 581 (620)
Q Consensus 581 ~ 581 (620)
+
T Consensus 437 q 437 (439)
T KOG0739|consen 437 Q 437 (439)
T ss_pred c
Confidence 4
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-44 Score=378.31 Aligned_cols=244 Identities=40% Similarity=0.708 Sum_probs=227.7
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
..+++|+|+-|++++|++|.|.+.+ |+.|+.|.++|-.-|+||||.||||||||+||||+|.+.+.+|++..++++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3578999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
|+|...+.+|++|..|+..+||||||||||++..+|.... ....+..++|||.+|||+..+.+++||++||.|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999998886542 2378899999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
+||.||||||+++.+|.||...|.+||+.|+++.++..++|+.-||+-|.||+|+||.+|++.|+..|..+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-------- 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-------- 525 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999998887654
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...|++.||+.|-.++
T Consensus 526 -----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------------cccccHHHHhhhhhhe
Confidence 2357777777775544
No 16
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-44 Score=386.93 Aligned_cols=268 Identities=38% Similarity=0.699 Sum_probs=250.8
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 368 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~ 368 (620)
++++ .++||+....+.+++.+.+|+.++..|..+|+++|+++|+|||||||||.+++++|++.++.++.++++++++++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6777 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHhhhccC-CeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 369 FGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~~~-p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
.|+++.++++.|+.|...+ |++|||||+|.+++++.... ...+|+..+|+++||++....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999998 99999999999999886542 268999999999999999889999999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
++++| ||||+.+++..|+..+|.+|++.+++++++..++++..+|..|+||+|+||..+|++|.+.++++.
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~-------- 405 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRT-------- 405 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhh--------
Confidence 99999 999999999999999999999999999999888999999999999999999999999999999872
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHHh-----------hcCChHHHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR-----------RSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~-----------psvs~~di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
+++|..|+..++ |+++|+||||||++|.+++++++| |++|||.
T Consensus 406 ----------------------~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~--p~~~pe~ 459 (693)
T KOG0730|consen 406 ----------------------LEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEW--PLKHPEK 459 (693)
T ss_pred ----------------------HHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhh--hhhchHH
Confidence 334444444443 679999999999999999999999 9999998
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=345.48 Aligned_cols=251 Identities=42% Similarity=0.722 Sum_probs=236.2
Q ss_pred eeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 286 ~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.+.|.-.|+||||++.++++|.+.+..|+.|++.|..+|+.||+|+|+|||||||||++|||.|...+..|+.+-++.|+
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC
Q 007053 366 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 445 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~ 445 (620)
..|+|+..+.++..|..|+..+|+||||||+|.+..+|-.+.........|.+-+||..+||+.+...+-||++||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999888665444444567778889999999999999999999999999
Q ss_pred CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 007053 446 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 525 (620)
Q Consensus 446 Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~ 525 (620)
|||+|+|.||+|+.|+||.|+.+.|..|++.|.+++....|+++++||+-|++|+|++.+++|-+|.+.|+|+.
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------ 396 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------ 396 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHhccCCcccccccccchhhhhHHHHHHHHHHHh
Q 007053 526 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 561 (620)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ 561 (620)
..+++.+||.+++.+++
T Consensus 397 -------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 -------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred -------------------cccccHHHHHHHHHHHH
Confidence 23699999999998775
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-43 Score=349.43 Aligned_cols=249 Identities=40% Similarity=0.724 Sum_probs=233.1
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
..|.-+|.||||++.+++++++.++.|+.||+.|+.+|+.||+||+|||+||||||+||+|+|+...+.|+.+-+++|+.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCC
Q 007053 367 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 446 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~L 446 (620)
+|.|+..+.+|++|+.|..++|+|+||||||++..+|-...+.......|.+-+||+.+|++.+++.|-||.+||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999998886544433344556667889999999999999999999999999
Q ss_pred cccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 447 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 526 (620)
Q Consensus 447 d~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~ 526 (620)
||+|.||||+|+.|+|+.||...+..||..|...+.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 527 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...++++||..|.+.+
T Consensus 411 ------------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ------------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ------------------HhhccHHHHHHHHHHH
Confidence 4479999999998876
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=368.44 Aligned_cols=254 Identities=44% Similarity=0.731 Sum_probs=234.1
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
..+.|+++|+||||++.++++|++.+.+|+.+++.|.++|+.+|+++|||||||||||++|+++|++++.+|+.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
..+|.|+.+..++.+|..|+...|+||||||+|.++.++............+++.+|+..++++....+++||+|||+++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 99999999999999999999999999999999999987644322223456678899999999988778899999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.|||+++|||||+..|+|++|+.++|..||+.++.+..+..++++..+|..|+||||+||.++|++|.+.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999774
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhc
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 563 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ps 563 (620)
...|+.+||.+|++++...
T Consensus 371 --------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 --------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------------CCccCHHHHHHHHHHHHhc
Confidence 2369999999999988654
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.6e-41 Score=388.32 Aligned_cols=296 Identities=44% Similarity=0.758 Sum_probs=261.8
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
.++++|+||+|++.+++++++++.+|+.+++.|.++|+.+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
+.|+++..++.+|+.+....|+||||||+|.+++.++... +....+++++|++.|+++.....++||++||+++.||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998765431 2345788999999999998888899999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
++++|+|||+..++++.|+.++|.+||+.+++..++..++++..+++.|+||+++||..+|++|++.++++.+.....
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~-- 406 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI-- 406 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc--
Confidence 999999999999999999999999999999999998889999999999999999999999999999999887542100
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHHhhc-----------CChHHHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS-----------VSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ps-----------vs~~di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
... ...+. ........++.+||..|++.++|+ ++|+||++++.+|+++.+.+.| |++||+.
T Consensus 407 --~~~-~~~i~-~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~--~~~~~~~ 478 (733)
T TIGR01243 407 --NFE-AEEIP-AEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEW--PLKHPEI 478 (733)
T ss_pred --ccc-ccccc-chhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHh--hhhCHHH
Confidence 000 00000 001123468999999999988754 6899999999999999999999 9999985
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=379.01 Aligned_cols=248 Identities=44% Similarity=0.783 Sum_probs=230.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 368 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~ 368 (620)
..++|.|+.|+++++++|.|++.+ |++|+.|.++|...|+|+||+||||||||+||+|+|.+.+.||+.+++++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 459999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCC-CCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 369 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS-SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~-~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
+|.....++.+|..|+..+||||||||||.+...|+. ..+..+......++|||.+||++.....|+|+++||+++.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9988999999999999999999999999999998842 223344566788999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 526 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~ 526 (620)
++++||||||+.|+++.|+..+|.+||+.|++...+. .++++..+|.+|.||+|+||.++|++|+..|.|+.
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~------- 537 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG------- 537 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999885 78899999999999999999999999999999875
Q ss_pred HHHhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 527 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
...|+..||+.|++++.-
T Consensus 538 ------------------~~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 538 ------------------LREIGTKDLEYAIERVIA 555 (774)
T ss_pred ------------------cCccchhhHHHHHHHHhc
Confidence 336899999999996653
No 22
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-41 Score=345.90 Aligned_cols=278 Identities=38% Similarity=0.613 Sum_probs=237.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcC-CCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
=.++|+||||++.++++|++.+..|+.+|++|.+.+ +.|++|||||||||||||++|+|+|++.+++|+.|..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 368999999999999999999999999999997544 4688999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcc--eEEEEccCCCCCC
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPDI 445 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~--~viVIatTn~~~~ 445 (620)
|+|++++.++.+|..|..-.||||||||+|++...|+.. ...++..+-++|....||+..+. .|+|+|+||+|..
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~---dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST---DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc---hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 999999999999999999999999999999999988433 34577888899999999998765 4999999999999
Q ss_pred CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 007053 446 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 525 (620)
Q Consensus 446 Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~ 525 (620)
||.|++| |+.+.++++.|+.++|.+||+.++++..+..++|+.++|..|+||||.||.++|+.|+...+++.+.....
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~ 321 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETG 321 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhccc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999998876400
Q ss_pred HH-HHhccCCcccccc--cccchhhhhHHHHHHHHHHHhhcCChHHHHH
Q 007053 526 RE-RRRSENPEAMEED--VEDEVAEIKAVHFEESMKYARRSVSDADIRK 571 (620)
Q Consensus 526 ~~-~~~~~~~~~~~~~--~~~~~~~vt~~df~~Al~~~~psvs~~di~~ 571 (620)
.. ...........+. ..-....++++||..|.+.+-++++.+...+
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~ 370 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRM 370 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhh
Confidence 00 0000000000000 0011467999999999999988755544433
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.9e-41 Score=364.74 Aligned_cols=259 Identities=49% Similarity=0.813 Sum_probs=236.7
Q ss_pred cceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCc
Q 007053 283 ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362 (620)
Q Consensus 283 ~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~ 362 (620)
....+.|+++|++|+|+++++++|++.+.+|+.+++.|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++
T Consensus 120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
++..+|.|+++..++.+|..|+...|+||||||+|.++..+............+.+.+++..++++....+++||+|||+
T Consensus 200 ~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 200 ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred HHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999876543222233456778889999998887788999999999
Q ss_pred CCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007053 443 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 522 (620)
Q Consensus 443 ~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~ 522 (620)
++.+|++++|||||+..|+|++|+.++|.+||+.++++..+..++++..+|..|+||+|+||.++|++|.+.|+++.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--- 356 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--- 356 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999998763
Q ss_pred HHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCCh
Q 007053 523 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSD 566 (620)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~ 566 (620)
...|+.+||.+|++.++++...
T Consensus 357 ----------------------~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 357 ----------------------RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred ----------------------CCCcCHHHHHHHHHHHhccccc
Confidence 2359999999999999886544
No 24
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-40 Score=349.17 Aligned_cols=408 Identities=30% Similarity=0.492 Sum_probs=301.3
Q ss_pred CCCCCCCceeeeHhhhcccccccCCeEEEeecCCC---CCcceEEeecc-----CCcccccccchhhhhhhhhhhhhccc
Q 007053 79 DDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADV---KYGKRVHILPV-----DDTIEGVTGNLFDAYLKPYFTEAYRP 150 (620)
Q Consensus 79 ~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~---~~a~~v~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (620)
..+...|.|..+...|+=+++++|+.|.|++.... .+-..+++--- ..+-+.+..+....-.+..|. +.+
T Consensus 54 ~~~i~~g~i~fs~~qR~wa~~Sl~qev~V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~--~q~ 131 (744)
T KOG0741|consen 54 TPSIPPGNIGFSLPQRKWAGWSLGQEVEVKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN--SQA 131 (744)
T ss_pred cCCCCCceeccchhhhhhhhcccCceeEEEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc--Ccc
Confidence 34778999999999999999999999999974221 11122222110 000122222222233333443 568
Q ss_pred cccCCeEEEecCc-eeEEEEEEEeCCCCce-----------------eecCCceEeeCCCccccccccccccCCcccccc
Q 007053 151 VRKGDLFLVRGGM-RSVEFKVIETDPPEYC-----------------VVAPDTEIFCEGEPVRREDENRLDEVGYDDVGG 212 (620)
Q Consensus 151 v~~gd~i~v~~~~-~~~~~~v~~~~p~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ig~ 212 (620)
..+|+.+.....+ .-+.++|.++.--++. ++..+|+|.+.
T Consensus 132 fsvgQ~~~f~f~~~~~l~l~v~~ie~~D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~---------------------- 189 (744)
T KOG0741|consen 132 FSVGQQLVFEFNGNKLLGLKVKDIEAFDPGISEGESAVTKRQKIERGLLLGNTQIVFE---------------------- 189 (744)
T ss_pred cCCccEEEEEecCceEeeeEEEEEeeeccccccCCcccccccceeeeEeecCcEEEEE----------------------
Confidence 9999999887765 6677877776543322 12222222111
Q ss_pred hhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccc
Q 007053 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN 292 (620)
Q Consensus 213 l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~ 292 (620)
+..-. .+.+.. -.+.+| .....-.|+..
T Consensus 190 --------------------------------------k~~~s-----~lnL~~------~~~~k~---~~n~ii~Pdf~ 217 (744)
T KOG0741|consen 190 --------------------------------------KAENS-----SLNLIG------KSKTKP---ASNSIINPDFN 217 (744)
T ss_pred --------------------------------------eccCc-----ceEeec------cccccc---hhccccCCCCC
Confidence 00000 000000 000001 11223346677
Q ss_pred ccc--ccchHHHHHHH-HHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh-ceeeecCcceeeee
Q 007053 293 WED--IGGLENVKREL-QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMW 368 (620)
Q Consensus 293 ~~d--i~Gl~~~k~~L-~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~-~~i~i~~~~l~~~~ 368 (620)
|++ |||++.....+ ++++..-.-.|+..+++|+...+|+|||||||||||++||.+...+++ .--.|++++++++|
T Consensus 218 Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KY 297 (744)
T KOG0741|consen 218 FESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKY 297 (744)
T ss_pred hhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHh
Confidence 776 57998776654 566666677789999999999999999999999999999999999976 45678999999999
Q ss_pred ccccccchHHHHHhhhc--------cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 369 FGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~--------~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
+|++|+++|++|..|.. +.-.||+|||||+++.+|++. .+.++..+.+++|||..|||+...++++||+-|
T Consensus 298 VGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~-~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMT 376 (744)
T KOG0741|consen 298 VGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM-AGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMT 376 (744)
T ss_pred hcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC-CCCCCccHHHHHHHHHhcccHHhhhcEEEEecc
Confidence 99999999999998854 234799999999999999876 444788999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC----CCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHH
Q 007053 441 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS----PVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 516 (620)
Q Consensus 441 n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~----~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~ 516 (620)
||.|.||+||+|||||....++.+||+..|.+||+.|++.+ .+..++|+.+||.+|..|||++|+.|++.|...|+
T Consensus 377 NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~ 456 (744)
T KOG0741|consen 377 NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAM 456 (744)
T ss_pred CchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998665 46789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhc--CChHHHHHHH
Q 007053 517 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS--VSDADIRKYQ 573 (620)
Q Consensus 517 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ps--vs~~di~~~e 573 (620)
-|.+..+.. . .. .....+...|++.||..||.+++|. ++.+|+..+.
T Consensus 457 nR~vk~~~~-~--------~~-~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 457 NRHVKAGGK-V--------EV-DPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HhhhccCcc-e--------ec-CchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 998765411 0 00 1112335679999999999999998 5777776653
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7.2e-40 Score=354.98 Aligned_cols=252 Identities=40% Similarity=0.704 Sum_probs=231.2
Q ss_pred eeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 286 ~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.+.|.++|+||+|++.++++|++++.+|+.+++.|..+|+.+++++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC
Q 007053 366 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 445 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~ 445 (620)
++|.|+.+..++.+|..|+...||||||||||.++.++............+.+.+||..++++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999999999999999999999999999999999876543222233456777889999998877778999999999999
Q ss_pred CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 007053 446 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 525 (620)
Q Consensus 446 Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~ 525 (620)
||++++|||||++.|+|++|+.++|.+||+.++.++.+..++++..++..++||||+||.++|++|++.|+++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHHHhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 526 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
...|+.+||..|++++..
T Consensus 409 -------------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 -------------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred -------------------CCccCHHHHHHHHHHHHh
Confidence 236999999999998743
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.6e-39 Score=354.34 Aligned_cols=315 Identities=27% Similarity=0.421 Sum_probs=250.8
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccc
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPN 290 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~ 290 (620)
..++.|++.+.|++-.|+..+++.+... .. .+..+.+..+ .+.-...+.. +..- ....++
T Consensus 165 ~~~~~l~~~~~gls~~~~~~~~~~~~~~-----~~-------~~~~~~~~~i---~~~k~q~~~~---~~~l--e~~~~~ 224 (489)
T CHL00195 165 ELLENLTRACQGLSLERIRRVLSKIIAT-----YK-------TIDENSIPLI---LEEKKQIISQ---TEIL--EFYSVN 224 (489)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH-----cC-------CCChhhHHHH---HHHHHHHHhh---hccc--cccCCC
Confidence 3457789999999988888777653221 01 1111111100 0111111111 1001 112357
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeecc
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 370 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g 370 (620)
.+|++|||++.+|+.+++.... .......+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.++|+|
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG 301 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC
Confidence 7899999999999999876542 2345567899999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccc
Q 007053 371 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPAL 450 (620)
Q Consensus 371 ~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al 450 (620)
+++.+++++|..|+..+||||||||||.++..++.. ..++...+++++|++.|+.. ..+++||+|||+++.||+++
T Consensus 302 ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 302 ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 999999999999999999999999999998754332 22456789999999999853 45799999999999999999
Q ss_pred cCCCCCCceeeeeCCChhHHHHHHHHhhccCCC--CCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 451 LRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV--SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 528 (620)
Q Consensus 451 ~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l--~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~ 528 (620)
+|+||||+.++++.|+.++|.+||+.++++... ..+.++..||+.|+||||+||+++|.+|...|..+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999987643 247899999999999999999999999998887532
Q ss_pred HhccCCcccccccccchhhhhHHHHHHHHHHHhhc--CChHHHHHHHHHHHH
Q 007053 529 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS--VSDADIRKYQAFAQT 578 (620)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ps--vs~~di~~~e~~k~~ 578 (620)
..++.+||..|++++.|. ...++|..|++|...
T Consensus 449 -----------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 449 -----------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 258999999999999997 467899999998764
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-39 Score=356.49 Aligned_cols=267 Identities=41% Similarity=0.768 Sum_probs=242.4
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
...++|.|+.|.+++++++.|.+.. ++.|..|..+|..-|+|+||+||||||||+||+|+|.+.+.||+++++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5679999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
|+|.....+|++|..|++++||||||||||++..+|+...+.....-+..++|||.+||++..+..|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999998876555545566779999999999999889999999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
+||+||||||+.|.++.||...|.+|++.|+++.++..++++..+|+.|.||+|+||.+++++|+..|.|+.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHHh-----hc--CC--hHHHHHHHHHHHHHh
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR-----RS--VS--DADIRKYQAFAQTLQ 580 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~-----ps--vs--~~di~~~e~~k~~l~ 580 (620)
...+++.||++|+.++- .+ ++ ...+.-|.+.-..+.
T Consensus 375 -----------------~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv 419 (596)
T COG0465 375 -----------------KKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALV 419 (596)
T ss_pred -----------------CeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHH
Confidence 33689999999988873 22 33 234455555544443
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.4e-37 Score=346.58 Aligned_cols=252 Identities=42% Similarity=0.782 Sum_probs=228.8
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
..+.|.++|+|++|++.+++++++++.+ +.+++.|..+|..+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3446889999999999999999998887 899999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
.+.+.|.++..++.+|..|+...||||||||+|.+...++...........+++++||.+|+++....+++||+|||+++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 99999999999999999999999999999999999988765322223345688999999999998888899999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.||++++|||||++.++++.|+.++|.+||+.+++..++..++++..+|..|.||+++||.++|++|...|.++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999998888788999999999999999999999999988876643
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
...++.+||..|+..+..
T Consensus 280 --------------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 --------------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred --------------------CCCCCHHHHHHHHHHHhc
Confidence 235899999999998753
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.7e-37 Score=331.77 Aligned_cols=251 Identities=51% Similarity=0.842 Sum_probs=227.7
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
..+.|.+.|++|+|+++++++|++++.+|+.+++.|..+|+.+++++|||||||||||++|+++|++++.+|+.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
...|.|+....++.+|..++...|+||||||+|.+...+............+.+.+++..++++....+++||+|||+++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 88999998889999999999999999999999999876654322223345567788888888887777899999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.+|++++|||||++.++|+.|+.++|.+||+.++....+..++++..++..|.||+|+||.++|++|.+.|+++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 999999999999999999999999999999999999888888999999999999999999999999999998763
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...|+.+||.+|++++
T Consensus 348 --------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCccCHHHHHHHHHHh
Confidence 2369999999999875
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=311.24 Aligned_cols=248 Identities=41% Similarity=0.718 Sum_probs=226.9
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
..+++|+.++|+..+..++++.++.|+..|++|.+.|+.+|++++||||||||||++|+++|..++++|+.+.++++.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
|.|++.+.+++.|..|+...|||||+||||++.+.+............+.+-+|++.|++....+.|-+|+|||+|+.||
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 99999999999999999999999999999999988744322222344556667788889998889999999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
|+|+||||+++.+.+|.|+...|..|++.|.+......+++.+.+.+.++||.|+|+.+.|.+|.+.|+++.
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~-------- 357 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE-------- 357 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh--------
Confidence 999999999999999999999999999999988888888999999999999999999999999999998864
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...+-.++|..++++.
T Consensus 358 -----------------~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 -----------------RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred -----------------hHHHhHHHHHHHHHHH
Confidence 2357888999888766
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.6e-36 Score=331.30 Aligned_cols=194 Identities=48% Similarity=0.892 Sum_probs=176.0
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc---------
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------- 355 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~--------- 355 (620)
..+.|+++|++|||++..++++++.+.+|+.+++.|..+|+.+++++|||||||||||++|+++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred -eeeecCcceeeeeccccccchHHHHHhhhcc----CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC
Q 007053 356 -FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 430 (620)
Q Consensus 356 -~i~i~~~~l~~~~~g~se~~i~~if~~A~~~----~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~ 430 (620)
|+.+.+++++++|.|+++..++.+|..++.. .||||||||+|.++..++.. ..+....+++++||+.||++..
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~--~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG--VSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC--ccchHHHHHHHHHHHHhccccc
Confidence 6678888999999999999999999988763 69999999999999877543 1223456789999999999988
Q ss_pred cceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 431 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 431 ~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
..+++||+|||+++.|||+++||||||..|+|++|+.++|.+||+.++..
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999999999999999999999864
No 32
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=347.69 Aligned_cols=330 Identities=31% Similarity=0.518 Sum_probs=261.2
Q ss_pred hhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccc
Q 007053 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN 292 (620)
Q Consensus 213 l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~ 292 (620)
+...+..+.+|++++....|..++....+.....++....+..... . ..+..+.. +.+..........+.
T Consensus 194 ~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~------~-~~~~~~~~---~~~d~dp~~~~~~v~ 263 (1080)
T KOG0732|consen 194 KRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKG------L-QTAGLRVQ---KEADSDPLSVDSSVG 263 (1080)
T ss_pred hhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCc------c-ccchhhcc---cccccCchhhhcccC
Confidence 4557788999999999999999887776666665544332221110 0 01111111 111111112235689
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcceeee
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTM 367 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~l~~~ 367 (620)
|++|||++.++.+|+|++..|+.+|+.|.++++.||+|+|||||||||||+.|+++|..+ ...|+.-++++.+++
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lsk 343 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSK 343 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999887 346777789999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
|+|+.++.++.+|++|+...|+||||||||-|++.|.... ......+++.||..|+|+...+.|+||+|||+++.+|
T Consensus 344 wvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~d 420 (1080)
T KOG0732|consen 344 WVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAID 420 (1080)
T ss_pred ccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccc
Confidence 9999999999999999999999999999999999885542 2255678999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCC-CCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 526 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l-~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~ 526 (620)
|+++|||||++.++|++|+.+.|.+|+..+.++-.- ....-+..||+.|.||-|+||+.||.+|++.++++........
T Consensus 421 paLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s 500 (1080)
T KOG0732|consen 421 PALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSS 500 (1080)
T ss_pred hhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecc
Confidence 999999999999999999999999999999876542 1233467999999999999999999999999999864321100
Q ss_pred HHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcC
Q 007053 527 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSV 564 (620)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psv 564 (620)
... ..+ ..+...|+..||..|+.++.|+.
T Consensus 501 ~~k-----l~~----d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 501 SDK-----LLI----DVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred ccc-----ccc----cchhhhhhhHhhhhhhhccCCCC
Confidence 000 000 11233499999999999887653
No 33
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=319.50 Aligned_cols=281 Identities=37% Similarity=0.630 Sum_probs=245.8
Q ss_pred cceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCc
Q 007053 283 ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362 (620)
Q Consensus 283 ~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~ 362 (620)
+.....+++.|+|++|++.+++.+.+++.||+..+++|..+ ..+.+++||.||||+|||+|++|+|.++++.|+.++++
T Consensus 142 EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 142 EIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred HHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHH
Confidence 34455678999999999999999999999999999999764 35678999999999999999999999999999999999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC--cceEEEEccC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGAT 440 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~--~~~viVIatT 440 (620)
.|.++|+|++++.++.+|.-|+...|+|+||||+|+++.+|... .....+|+..++|-.+++... ..+|+||+||
T Consensus 221 sLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 221 SLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred HhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc---ccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999998443 344677899999888887654 4589999999
Q ss_pred CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC-CCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHH
Q 007053 441 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS-PVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 519 (620)
Q Consensus 441 n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~-~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~ 519 (620)
|+|+.+|.+++| ||...+++|.|+.+.|..+|+.++.+. ....+.++..|++.|+||++.||.++|++|++.-+++.
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 999999999999 999999999999999999999999776 33456789999999999999999999999999888775
Q ss_pred HHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Q 007053 520 IEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 520 i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~ 581 (620)
... .. ..-...+....++..||..|++.++|+++...+..|++|..+|..
T Consensus 376 ~~~-~~-----------~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 376 GGT-TD-----------LEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred ccc-hh-----------hhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 332 00 001112446679999999999999999999999999999988853
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.2e-35 Score=335.88 Aligned_cols=247 Identities=43% Similarity=0.773 Sum_probs=224.9
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
.+.++|+|++|++++++++.+.+.+ +..++.|..+|...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3568999999999999999998876 888999999999999999999999999999999999999999999999999888
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
+.|.....++.+|..|+...||||||||+|.+...++...+........++++||.+|+++....+++||++||+++.+|
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 88888888999999999999999999999999987755433334456678999999999988888999999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
++++|||||++.+.+++|+.++|.+||+.++++.++..++++..+|..|.||+++||.++|++|+..|.++.
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~-------- 407 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK-------- 407 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999999888888999999999999999999999999998887653
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...++.+||+.|+.++
T Consensus 408 -----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------CCCcCHHHHHHHHHHH
Confidence 2358999999999887
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=9.1e-34 Score=323.62 Aligned_cols=248 Identities=40% Similarity=0.773 Sum_probs=225.5
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 368 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~ 368 (620)
....|+++.|++..++++.+.+.+ +..++.+..++...++++||+||||||||++++++|++++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999999887 6678888888888899999999999999999999999999999999999999889
Q ss_pred ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcc
Q 007053 369 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 448 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~ 448 (620)
.+.....++.+|..++...||||||||+|.+...++...+.......+++++||.+||++....+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999887654333334566799999999999988889999999999999999
Q ss_pred cccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 449 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 528 (620)
Q Consensus 449 al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~ 528 (620)
+++|||||++.++|+.|+.++|.+||+.++++.++..++++..+|+.|.||||+||.++|++|+..|.++.
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------- 376 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 376 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred HhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 529 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
...++.+||++|+..+.+
T Consensus 377 ----------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ----------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ----------------CCcccHHHHHHHHHHHhc
Confidence 235899999999987754
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4e-33 Score=329.81 Aligned_cols=213 Identities=19% Similarity=0.325 Sum_probs=178.0
Q ss_pred CCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee----------cc-------------
Q 007053 314 VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG------------- 370 (620)
Q Consensus 314 l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~----------~g------------- 370 (620)
........++|..+|+||||+||||||||+||+|+|.++++||+.|++++++..+ +|
T Consensus 1616 s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1616 SHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred ccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 3444566788999999999999999999999999999999999999999998654 12
Q ss_pred ------------------ccccc--hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-
Q 007053 371 ------------------ESEAN--VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS- 429 (620)
Q Consensus 371 ------------------~se~~--i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~- 429 (620)
..+.. ++.+|+.|+..+||||||||||.++... .....+++|+.+|++..
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~ 1766 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE 1766 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc
Confidence 12222 7889999999999999999999998541 11124789999999763
Q ss_pred --CcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHh--hccCCCCCC-cChHHHHhhcCCCCCCcH
Q 007053 430 --AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC--LRKSPVSKD-VDLRALAKYTQGFSGADI 504 (620)
Q Consensus 430 --~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~--l~~~~l~~d-v~l~~LA~~t~G~sg~DL 504 (620)
...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++..+ .++..+..+ +++..+|+.|.|||||||
T Consensus 1767 ~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADL 1846 (2281)
T CHL00206 1767 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDL 1846 (2281)
T ss_pred cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHH
Confidence 356899999999999999999999999999999999999999998864 455666544 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 505 TEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 505 ~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
.+||++|+..|+++. ...|+..+|+.|+.+.
T Consensus 1847 anLvNEAaliAirq~-------------------------ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1847 VALTNEALSISITQK-------------------------KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHHHHHcC-------------------------CCccCHHHHHHHHHHH
Confidence 999999999999874 2247777778777654
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=3.3e-31 Score=275.13 Aligned_cols=200 Identities=19% Similarity=0.254 Sum_probs=156.7
Q ss_pred cccccc-cchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec
Q 007053 291 VNWEDI-GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 369 (620)
Q Consensus 291 v~~~di-~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~ 369 (620)
.+|+.+ +|+.-...-+...+...- ...+..+++++|.+++||||||||||++|+++|++++++|+.+++++|.++|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 345555 555444443333332111 11223367899999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHhhhc-----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHH-HHHhhhhcCC------------CCc
Q 007053 370 GESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVL-NQLLTEMDGM------------SAK 431 (620)
Q Consensus 370 g~se~~i~~if~~A~~-----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl-~~LL~~ld~~------------~~~ 431 (620)
|++++.++++|..|+. .+||||||||||.+++.++.. + .....+++ .+|+++||+. ...
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~-~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--Q-YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--C-cchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 9999999999999975 469999999999999987632 1 22334554 8999998863 235
Q ss_pred ceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCC
Q 007053 432 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 498 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G 498 (620)
..|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.+++...+. ..++..|+..+.|
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 67999999999999999999999999864 5899999999999999987765 4555566655544
No 38
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=276.48 Aligned_cols=251 Identities=23% Similarity=0.378 Sum_probs=206.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV 407 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~ 407 (620)
...+||+|+||||||++++++|.++|.+++.++|.++.+...+..+.++..+|.+|+...|+||||-++|.+.-.+.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d--- 507 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD--- 507 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC---
Confidence 45699999999999999999999999999999999999998899999999999999999999999999999983322
Q ss_pred CCCCCchhHHHHHHhhhhc---CCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC
Q 007053 408 GDAGGAADRVLNQLLTEMD---GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS 484 (620)
Q Consensus 408 ~~~~~~~~rvl~~LL~~ld---~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~ 484 (620)
++...+++..+-.++. ...+...++||++|+..+.+++.+++ .|-.+|.++.|+.++|.+||+.++....+.
T Consensus 508 ---gged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 508 ---GGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred ---CchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 1344555544433333 33456789999999999999999988 777899999999999999999999999999
Q ss_pred CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-cccccchhhhhHHHHHHHHHHHh--
Q 007053 485 KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAME-EDVEDEVAEIKAVHFEESMKYAR-- 561 (620)
Q Consensus 485 ~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~vt~~df~~Al~~~~-- 561 (620)
+++.+..+|.+|.||+.+|+..++..+...+..+...... ....+... .........++++||..|+.+++
T Consensus 583 ~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l------~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~ 656 (953)
T KOG0736|consen 583 QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGL------AGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE 656 (953)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcc------cccchhccccccccccceecHHHHHHHHHHHHHh
Confidence 9999999999999999999999998875444444322210 00000000 11122346799999999999876
Q ss_pred ----------hcCChHHHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 562 ----------RSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 562 ----------psvs~~di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
|+|+|+||||+|++|+++.+++++ ||+|||-
T Consensus 657 fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql--PL~hpeL 697 (953)
T KOG0736|consen 657 FSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL--PLKHPEL 697 (953)
T ss_pred hhhhcCCCCCCccchhcccCHHHHHHHHHHHhcC--cccChhh
Confidence 789999999999999999999999 9999997
No 39
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-25 Score=242.92 Aligned_cols=244 Identities=22% Similarity=0.324 Sum_probs=198.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh----hceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 402 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~----~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~ 402 (620)
.+.+|||+||+|||||.|++++++++. +++..++|+.+-........+.++.+|..+.+++|+||++|++|.|+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 356899999999999999999999874 5678899999887766667778899999999999999999999999983
Q ss_pred cCCCCCCCCCchhHHHHHHhhh-hcC-CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 403 RGSSVGDAGGAADRVLNQLLTE-MDG-MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 403 r~~~~~~~~~~~~rvl~~LL~~-ld~-~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
.+...+. .+.....+..+++. +.. ...+..+.||++.+....|+|.|.+|++|+.++.++.|+..+|.+||+..+++
T Consensus 510 s~~e~~q-~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 510 SSNENGQ-DGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred CcccCCc-chHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 3332222 23334444444433 222 23345679999999999999999999999999999999999999999999876
Q ss_pred CCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHH
Q 007053 481 SPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY 559 (620)
Q Consensus 481 ~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~ 559 (620)
.... ...+++-++..|+||...||..++.+|...|+.+.+.. ....+|.++|.++|+.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~---------------------~~klltke~f~ksL~~ 647 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN---------------------GPKLLTKELFEKSLKD 647 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc---------------------CcccchHHHHHHHHHh
Confidence 6522 22346669999999999999999999999999654321 1226899999999998
Q ss_pred Hhhc------------CChHHHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 560 ARRS------------VSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 560 ~~ps------------vs~~di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
..|. +.|+||+|+.+.|+-+++.++| |.|||.-
T Consensus 648 F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~--P~kyp~i 692 (952)
T KOG0735|consen 648 FVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEW--PSKYPQI 692 (952)
T ss_pred cChHHhhhccccccCCCCceecccHHHHHHHHHHHHhc--cccchHH
Confidence 8763 7899999999999999999999 9999986
No 40
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-23 Score=234.45 Aligned_cols=257 Identities=41% Similarity=0.681 Sum_probs=233.7
Q ss_pred CcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeee
Q 007053 312 YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVL 391 (620)
Q Consensus 312 ~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL 391 (620)
.++.+++.+..+++.++++++++||||||||+++++++.+ +..+..+++++..++|.++++..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 777788999999999999999999999999999999999
Q ss_pred eeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHH
Q 007053 392 FFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRL 471 (620)
Q Consensus 392 ~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~ 471 (620)
++|++|.+.+.+.. .......+++.+++..++++. ...+++++.+|++..+++++++|+||+..+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc---cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988866 234577899999999999998 44488899999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHH
Q 007053 472 QIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAV 551 (620)
Q Consensus 472 ~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~ 551 (620)
+|+..+.+.+.+..+.++..++..+.|++++++..+|.++.+.+.++.+. .......++.+
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-------------------~~~~~~~~~~~ 217 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-------------------LVGEYIGVTED 217 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc-------------------cCcccccccHH
Confidence 99999999999888899999999999999999999999999999988630 01224468999
Q ss_pred HHHHHHHHHhh---------cCChHHHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 552 HFEESMKYARR---------SVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 552 df~~Al~~~~p---------svs~~di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
+|..+++.+.| .++|+|+++++..|+.+++.+.| |++|||.
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~--~~~~~e~ 267 (494)
T COG0464 218 DFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIET--PLKRPEL 267 (494)
T ss_pred HHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHh--HhhChHH
Confidence 99999999754 58999999999999999999999 9999995
No 41
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.5e-22 Score=210.08 Aligned_cols=249 Identities=22% Similarity=0.332 Sum_probs=175.1
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccc-----e
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRET-----V 285 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~-----~ 285 (620)
-++++||..|++|+||+|++|++.|.+.|+.|.+..- .+...+++..++++|+++||..||..++|+..... .
T Consensus 427 Vdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~ 504 (744)
T KOG0741|consen 427 VDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERF 504 (744)
T ss_pred cCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHH
Confidence 3688999999999999999999999999999998764 34677888889999999999999999999854221 1
Q ss_pred eeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 286 ~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
+...-+.|.. .+.+.+......-+..+.....+-..+||+||||+|||+||..+|..+++||+.+-.++-+
T Consensus 505 ~~~Gmi~~g~---------~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m 575 (744)
T KOG0741|consen 505 VMNGMINWGP---------PVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM 575 (744)
T ss_pred HhCCceeecc---------cHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc
Confidence 1111233322 1111111111111222333445667899999999999999999999999999988766543
Q ss_pred eee-ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcc-eEEEEccCCCC
Q 007053 366 TMW-FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK-TVFIIGATNRP 443 (620)
Q Consensus 366 ~~~-~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~-~viVIatTn~~ 443 (620)
..+ -......++++|+.|+++.-+||++|+|++|..-..- ....++-++..|+..+...++.+ +++|++||.+.
T Consensus 576 iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI----GPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~ 651 (744)
T KOG0741|consen 576 IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI----GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR 651 (744)
T ss_pred cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc----CchhhHHHHHHHHHHhccCCCCCceEEEEecccHH
Confidence 221 1122345899999999999999999999999743211 11255667788888888776654 67888888876
Q ss_pred CCCcc-cccCCCCCCceeeeeCCCh-hHHHHHHHH
Q 007053 444 DIIDP-ALLRPGRLDQLIYIPLPDE-ESRLQIFKA 476 (620)
Q Consensus 444 ~~Ld~-al~rpgRf~~~i~~~~P~~-~eR~~Il~~ 476 (620)
+.|.. .+.. .|+..+++|..+. ++..+++..
T Consensus 652 ~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 652 EVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 55432 2223 6788888887665 555555543
No 42
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.2e-22 Score=201.15 Aligned_cols=187 Identities=31% Similarity=0.497 Sum_probs=151.4
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcC-CCCCceeeeecCCCChhHHHHHHHHhhhh---------hceeeecC
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKG 361 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~LAralA~~l~---------~~~i~i~~ 361 (620)
-|+.+.--...|++|..+....+...+.-.... +...+-+|||||||||||+|++|+|+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 477777677888888887776554333211111 23456799999999999999999999884 35789999
Q ss_pred cceeeeeccccccchHHHHHhhhcc---CC--eeeeeccchhHHhhcCC-CCCCCCCchhHHHHHHhhhhcCCCCcceEE
Q 007053 362 PELLTMWFGESEANVREIFDKARQS---AP--CVLFFDELDSIATQRGS-SVGDAGGAADRVLNQLLTEMDGMSAKKTVF 435 (620)
Q Consensus 362 ~~l~~~~~g~se~~i~~if~~A~~~---~p--~IL~iDEiD~l~~~r~~-~~~~~~~~~~rvl~~LL~~ld~~~~~~~vi 435 (620)
..|+++|++++.+.+.++|++...- .. ..++|||+++|+..|.. .++......-|+++.+|+.||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999887541 22 35669999999988843 223334456789999999999999999999
Q ss_pred EEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 436 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 436 VIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
+++|+|-.+.||.|+.. |-|-..++++|+.+.|.+|++.++..
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999988744
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=3.7e-21 Score=199.78 Aligned_cols=215 Identities=23% Similarity=0.327 Sum_probs=162.8
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCC---ceeeeecCCCChhHHHHHHHHhhhh-------hceeeecCc
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 362 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~---~~vLL~GppGtGKT~LAralA~~l~-------~~~i~i~~~ 362 (620)
+.+++|++++|+++++++.+ +..++.+.+.|+.++ .++||+||||||||++|+++|+.+. .+++.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45899999999999999987 445677777787654 3589999999999999999998763 258899999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
++.+.|+|+++...+.+|+.+.. +||||||+|.|...++. ......+++.|+..|+... .+++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQR--DDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence 99999999988888888888753 59999999999743221 2245678888999887543 45677777753
Q ss_pred CC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC--CCCCcChHHHHhh------cCCCC-CCcHHHHH
Q 007053 443 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP--VSKDVDLRALAKY------TQGFS-GADITEIC 508 (620)
Q Consensus 443 ~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~--l~~dv~l~~LA~~------t~G~s-g~DL~~l~ 508 (620)
.. .++|++++ ||+..|+|++|+.+++.+|++.+++... +..+. ...+... ...|. ++++.+++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 22 24689988 9999999999999999999999997643 33222 2223322 13344 68999999
Q ss_pred HHHHHHHHHHHHH
Q 007053 509 QRACKYAIRENIE 521 (620)
Q Consensus 509 ~~A~~~A~~~~i~ 521 (620)
++|......|...
T Consensus 248 e~~~~~~~~r~~~ 260 (287)
T CHL00181 248 DRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHc
Confidence 9888777766543
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.7e-21 Score=202.80 Aligned_cols=208 Identities=21% Similarity=0.337 Sum_probs=164.5
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeecc
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 370 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g 370 (620)
.+|+.+.--.+.|++|.+-+..+++..+.|++.|....+|.|||||||||||+++.|+|++++..++.++.++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 788899988999999999999999999999999999999999999999999999999999999999988876642
Q ss_pred ccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCC---CCC-CchhHHHHHHhhhhcCCCCcc--eEEEEccCCCCC
Q 007053 371 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG---DAG-GAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPD 444 (620)
Q Consensus 371 ~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~---~~~-~~~~rvl~~LL~~ld~~~~~~--~viVIatTn~~~ 444 (620)
.... ++.++..+... +||+|++||+-+..+..... +.. ....-.++.||+.+||+-+.- -.+||.|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2222 88888776544 69999999997653322211 111 123346899999999985543 678889999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCC--CCCCcHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG--FSGADITEIC 508 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G--~sg~DL~~l~ 508 (620)
.|||||+||||+|.+|+++..+.+.-+.+++.++.-.. ...-+.++.+..++ .|+||+...+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 99999999999999999999999999999999985432 11123444443333 6899987544
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=3.2e-21 Score=200.18 Aligned_cols=213 Identities=22% Similarity=0.301 Sum_probs=162.4
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCC---CceeeeecCCCChhHHHHHHHHhhhh-------hceeeecCcc
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPE 363 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~LAralA~~l~-------~~~i~i~~~~ 363 (620)
.+++|++++|+++.+++.+ +..++.+.+.|+.+ ..++||+||||||||++|+++|+.+. .+|+.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999999998 66777888888764 45899999999999999999998773 2699999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
+.+.|+|+++..++.+|+.+.. ++|||||++.|.+.++. ......+++.|+..|+... .+++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~~--~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQR--DDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcCC--CCEEEEEeCCcH
Confidence 9999999988888889988754 69999999998643221 2345677888999987543 456777776532
Q ss_pred --CC---CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhc------CC-CCCCcHHHHHHH
Q 007053 444 --DI---IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYT------QG-FSGADITEICQR 510 (620)
Q Consensus 444 --~~---Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t------~G-~sg~DL~~l~~~ 510 (620)
+. ++|++.+ ||...|+||+++.+++.+|++.++++....-+. .+..+.... .. -+++++++++++
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 32 4799998 999999999999999999999999775432111 233333331 22 236889998888
Q ss_pred HHHHHHHHH
Q 007053 511 ACKYAIREN 519 (620)
Q Consensus 511 A~~~A~~~~ 519 (620)
|......|.
T Consensus 249 ~~~~~~~r~ 257 (284)
T TIGR02880 249 ARLRQANRL 257 (284)
T ss_pred HHHHHHHHH
Confidence 876666554
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=1.1e-20 Score=194.26 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=153.1
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCC---CceeeeecCCCChhHHHHHHHHhhh-------hhceeeecCc
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 362 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~LAralA~~l-------~~~~i~i~~~ 362 (620)
+++++|++++|+++++++.|+... ......|+.+ ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999999886443 3333456543 3578999999999999999999875 2368889999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
++.+.|+|+....++++|+.+. ++||||||+|.|.... ........+..|+..|+... ..+++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhccC--CCEEEEecCCc
Confidence 9999999999999999998875 3699999999996311 11234567888888887653 34555555433
Q ss_pred CC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhc-------C--CCCCCcHHHH
Q 007053 443 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYT-------Q--GFSGADITEI 507 (620)
Q Consensus 443 ~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t-------~--G~sg~DL~~l 507 (620)
.+ .++|++++ ||...+.|+.++.+++.+|++.++......- +..+..+++.. . .-+++.+.++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 22 36789988 9998999999999999999999987654321 11234443321 1 1235666777
Q ss_pred HHHHHHHHHHHH
Q 007053 508 CQRACKYAIREN 519 (620)
Q Consensus 508 ~~~A~~~A~~~~ 519 (620)
+..|......+.
T Consensus 231 ~e~a~~~~~~r~ 242 (261)
T TIGR02881 231 IEKAIRRQAVRL 242 (261)
T ss_pred HHHHHHHHHHHH
Confidence 776665555444
No 47
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=3.8e-21 Score=175.22 Aligned_cols=130 Identities=47% Similarity=0.794 Sum_probs=116.2
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccC-CeeeeeccchhHHhhcCCCCCC
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGD 409 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~-p~IL~iDEiD~l~~~r~~~~~~ 409 (620)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+.....++.+|..+.... |+||||||+|.+.+..+ ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 699999999999999999999999999999999998889999999999999998887 99999999999998762 22
Q ss_pred CCCchhHHHHHHhhhhcCCCCc-ceEEEEccCCCCCCCcccccCCCCCCceeeeeC
Q 007053 410 AGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464 (620)
Q Consensus 410 ~~~~~~rvl~~LL~~ld~~~~~-~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~ 464 (620)
.......+++.|+..++..... .+++||+|||.++.++++++| +||+..++++.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3456778899999999988765 569999999999999999998 89999999874
No 48
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-19 Score=186.16 Aligned_cols=179 Identities=30% Similarity=0.552 Sum_probs=140.0
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCC-eeeeeccchhHHhhcC
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRG 404 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p-~IL~iDEiD~l~~~r~ 404 (620)
.|-++||||||||||||++|+.||..+|+.+-.+.+.++-. .-.+.-..|+++|+.++.+.. -+|||||+|.+...|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 45688999999999999999999999999998888877632 122334568999999987654 5889999999998886
Q ss_pred CCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC
Q 007053 405 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS 484 (620)
Q Consensus 405 ~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~ 484 (620)
.. -.+...+..++.||-.-. .....++++.+||+|..+|.++-. |||.+++||+|..++|..||..|+.+..+.
T Consensus 461 kt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 461 KT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred hh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 53 223455667777765442 234567888899999999999987 999999999999999999999988553211
Q ss_pred ------------------C-----C----cChHHHHhhcCCCCCCcHHHHHHHH
Q 007053 485 ------------------K-----D----VDLRALAKYTQGFSGADITEICQRA 511 (620)
Q Consensus 485 ------------------~-----d----v~l~~LA~~t~G~sg~DL~~l~~~A 511 (620)
+ . .-+.+.|+.|+||||++|..|+.-.
T Consensus 535 ~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 535 PATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred cCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 0 0 1156788999999999999987543
No 49
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=8.7e-18 Score=195.67 Aligned_cols=247 Identities=21% Similarity=0.274 Sum_probs=176.2
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeeec
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 360 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i~ 360 (620)
-.++++.|.++...++.+.+.. ....++||+||||||||++++++|+.+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3677899999988887776654 235679999999999999999999987 66788888
Q ss_pred Cccee--eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEc
Q 007053 361 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 438 (620)
Q Consensus 361 ~~~l~--~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIa 438 (620)
+..++ .+|.|+.+..++++|+.+....|+||||||+|.|.+......+ ...+.+.|...+. .+.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-----~~~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-----SMDASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-----cHHHHHHHHHHHh----CCCeEEEE
Confidence 88887 5788999999999999998878899999999999865432211 1112333444443 46788999
Q ss_pred cCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC----C-CCCcChHHHHhhcCCCCCCc-----
Q 007053 439 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP----V-SKDVDLRALAKYTQGFSGAD----- 503 (620)
Q Consensus 439 tTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~----l-~~dv~l~~LA~~t~G~sg~D----- 503 (620)
+||..+ .+|+++.| ||. .|+++.|+.+++.+||+....... + -.+..+..++..+..|-+..
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 998633 57999999 997 799999999999999997664321 1 12233556666665554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHh----hcCChHHHHHHHHHHHHH
Q 007053 504 ITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR----RSVSDADIRKYQAFAQTL 579 (620)
Q Consensus 504 L~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~----psvs~~di~~~e~~k~~l 579 (620)
--.|+.+|+.....+. . ......|+.+|+..++.... ..++++++..+..+++.|
T Consensus 394 ai~lld~a~a~~~~~~------------~---------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 394 AIDVIDEAGASFRLRP------------K---------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred HHHHHHHhhhhhhcCc------------c---------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 1233444432111000 0 01123599999999998884 357889999999998888
Q ss_pred hhhc
Q 007053 580 QQSR 583 (620)
Q Consensus 580 ~~~~ 583 (620)
.+.+
T Consensus 453 ~~~v 456 (731)
T TIGR02639 453 KAKI 456 (731)
T ss_pred hcce
Confidence 8765
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.72 E-value=2.5e-17 Score=162.01 Aligned_cols=190 Identities=26% Similarity=0.406 Sum_probs=122.6
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
..+.+++|+.|++.++..++-++...... -.+..++|||||||+||||||+.+|++++.+|...+++.+
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i--- 86 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI--- 86 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC----
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh---
Confidence 34568999999999999988766542211 1245679999999999999999999999999998887654
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------C--------c
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------A--------K 431 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~--------~ 431 (620)
+....+..++..... ..||||||||+|... +...|+..|+... . .
T Consensus 87 ---~k~~dl~~il~~l~~--~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 87 ---EKAGDLAAILTNLKE--GDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp ----SCHHHHHHHHT--T--T-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred ---hhHHHHHHHHHhcCC--CcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 223345555555443 469999999998753 2344555554321 1 1
Q ss_pred ceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhcCCCCCCcHHHHHHH
Q 007053 432 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
.++.+|++|++...|.+.|+. ||.....+..++.++..+|++...+...+.-+. ...++|.++.|- ++--..|+++
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt-PRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT-PRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS-HHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC-hHHHHHHHHH
Confidence 358899999999999999988 999888999999999999999877665554332 356788888864 4433344443
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=2.1e-16 Score=165.76 Aligned_cols=192 Identities=24% Similarity=0.330 Sum_probs=134.8
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccc
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 371 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~ 371 (620)
+|+++.|.++.+++|..++...... ...+.+++|+||||||||+||+++|++++..+..+.++.+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------ 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------ 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------
Confidence 6899999999999999887532211 13456799999999999999999999998877666544321
Q ss_pred cccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC----------------CcceEE
Q 007053 372 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTVF 435 (620)
Q Consensus 372 se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----------------~~~~vi 435 (620)
....+...+... ..+.+|||||++.+.+.. .+.|+..|+... ...+++
T Consensus 68 ~~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~--------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 68 KPGDLAAILTNL--EEGDVLFIDEIHRLSPAV--------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred CchhHHHHHHhc--ccCCEEEEehHhhhCHHH--------------HHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 112233333332 345799999999986432 112232222111 123478
Q ss_pred EEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHHHHHHHHHH
Q 007053 436 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKY 514 (620)
Q Consensus 436 VIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~l~~~A~~~ 514 (620)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+....+.- +..+..+++.+.|. ++.+..+|..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 88999999999999988 9988899999999999999998876543322 22367888888875 47777888776655
Q ss_pred HH
Q 007053 515 AI 516 (620)
Q Consensus 515 A~ 516 (620)
|.
T Consensus 209 a~ 210 (305)
T TIGR00635 209 AQ 210 (305)
T ss_pred HH
Confidence 43
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=4.2e-17 Score=190.98 Aligned_cols=205 Identities=27% Similarity=0.369 Sum_probs=144.0
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee--------
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 365 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-------- 365 (620)
++++|++++++.+.+++...... +...+..+||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35889999999999987653211 112344799999999999999999999999999998765432
Q ss_pred -eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC---------C----CCc
Q 007053 366 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG---------M----SAK 431 (620)
Q Consensus 366 -~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~---------~----~~~ 431 (620)
..|+|.....+.+.|..+....| ||||||||.+.+..+. + ..+.|+..||. . ...
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D-------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C-------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 35777778888888888876666 8999999999853211 1 23445554442 1 112
Q ss_pred ceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhc-----cCCCC------CCcChHHHHh-hcCCC
Q 007053 432 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-----KSPVS------KDVDLRALAK-YTQGF 499 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~-----~~~l~------~dv~l~~LA~-~t~G~ 499 (620)
.++++|+|||.++.|++++++ ||. +|.|+.|+.+++.+|++.++. ...+. .+..+..+++ .+..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 468899999999999999998 995 899999999999999988762 11221 1112444544 23334
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 007053 500 SGADITEICQRACKYAIREN 519 (620)
Q Consensus 500 sg~DL~~l~~~A~~~A~~~~ 519 (620)
..++|+..+...+..+.++.
T Consensus 539 g~R~l~r~i~~~~~~~~~~~ 558 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVKL 558 (775)
T ss_pred CChHHHHHHHHHHHHHHHHH
Confidence 45666666666555554443
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.69 E-value=4.6e-16 Score=165.12 Aligned_cols=195 Identities=25% Similarity=0.348 Sum_probs=139.3
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 369 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~ 369 (620)
+.+|+++.|.++.++.+..++..... .-.++.++|||||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 45899999999999999888764211 123567899999999999999999999999887776655331
Q ss_pred cccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC----------------Ccce
Q 007053 370 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 433 (620)
Q Consensus 370 g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----------------~~~~ 433 (620)
....+..++... ..+++|||||||.+.... ... |...|+... ...+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-----------~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV-----------EEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchHH-----------HHH---HHHHHHhcceeeeeccCccccceeecCCC
Confidence 223345555543 345799999999986321 111 222222110 1124
Q ss_pred EEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHHHHHHHH
Q 007053 434 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRAC 512 (620)
Q Consensus 434 viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~l~~~A~ 512 (620)
+.+|++||++..+++++++ ||...+.|++|+.+++.+|++.......+.- +..+..+++.+.|. ++.+..+++++.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 6788999999999999987 9998999999999999999998876554432 22367888888875 577777887766
Q ss_pred HHHHH
Q 007053 513 KYAIR 517 (620)
Q Consensus 513 ~~A~~ 517 (620)
..+..
T Consensus 228 ~~a~~ 232 (328)
T PRK00080 228 DFAQV 232 (328)
T ss_pred HHHHH
Confidence 55543
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.2e-15 Score=159.61 Aligned_cols=149 Identities=28% Similarity=0.497 Sum_probs=115.3
Q ss_pred cccccccccchHHHH---HHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 289 PNVNWEDIGGLENVK---RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k---~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.+-+++++.|++... .-|++++.. ....+++|||||||||||||+.||...+.+|..+++-.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 355788888877655 234444443 33567999999999999999999999999999998643
Q ss_pred eeeccccccchHHHHHhhhcc----CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC-
Q 007053 366 TMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT- 440 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~~----~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT- 440 (620)
..-+.++++|+.|++. ...|||+||||++...++ ..||-.++ ++.+++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ--------------D~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ--------------DALLPHVE----NGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh--------------hhhhhhhc----CCeEEEEeccC
Confidence 3456789999999653 257999999999875443 33666665 5678888777
Q ss_pred -CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 441 -NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 441 -n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
|..-.|.++|++ |+. ++.+.+.+.++..++++..+
T Consensus 141 ENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 141 ENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred CCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHH
Confidence 666689999998 774 89999999999999999844
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.65 E-value=2.6e-15 Score=150.41 Aligned_cols=196 Identities=26% Similarity=0.379 Sum_probs=146.5
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
..+..|++..|.+++|++|+-++...-... ...-++|||||||.||||||..+|++++.++-..+++-+
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l--- 88 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL--- 88 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc---
Confidence 345689999999999999998887643333 345679999999999999999999999999998888876
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC--------C--------Cc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM--------S--------AK 431 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~--------~--------~~ 431 (620)
+....+..++.....+ .||||||||++.+. ..++ |.-.|+.+ . ..
T Consensus 89 ---eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-----------vEE~---LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 89 ---EKPGDLAAILTNLEEG--DVLFIDEIHRLSPA-----------VEEV---LYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ---cChhhHHHHHhcCCcC--CeEEEehhhhcChh-----------HHHH---hhhhhhheeEEEEEccCCccceEeccC
Confidence 3344566666665544 69999999998742 2222 33333322 1 12
Q ss_pred ceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCCCCcHHHHHHH
Q 007053 432 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
.++.+|++|.+...|...|+. ||.....+..++.++..+|++...+.+.+.-+ ....++|+++.|- ++=-..|+++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLrR 226 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT-PRIANRLLRR 226 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHHH
Confidence 468899999999999999988 99999999999999999999998766655433 2367889998874 5444455555
Q ss_pred HHHHHH
Q 007053 511 ACKYAI 516 (620)
Q Consensus 511 A~~~A~ 516 (620)
..-.|.
T Consensus 227 VRDfa~ 232 (332)
T COG2255 227 VRDFAQ 232 (332)
T ss_pred HHHHHH
Confidence 544444
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.65 E-value=8.2e-16 Score=177.72 Aligned_cols=245 Identities=21% Similarity=0.265 Sum_probs=163.3
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeeecC
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 361 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i~~ 361 (620)
.++.+.|.+...+++.+.+.. ....++||+||||||||++|+++|... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 456688888888888876664 234678999999999999999999864 344555555
Q ss_pred ccee--eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEcc
Q 007053 362 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 439 (620)
Q Consensus 362 ~~l~--~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIat 439 (620)
..++ .+|.|+.+..++.+|..+....++||||||||.|++.+... +....+.+.|...+ ..+.+.+|++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~-----~g~~d~~nlLkp~L----~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIKPLL----SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC-----CcHHHHHHHHHHHH----hCCCeEEEec
Confidence 5554 46788889999999999888888999999999998654321 11112222232222 2567899999
Q ss_pred CCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHH-----HHhhcCC-----CCCCcH
Q 007053 440 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRA-----LAKYTQG-----FSGADI 504 (620)
Q Consensus 440 Tn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~-----LA~~t~G-----~sg~DL 504 (620)
|+.++ ..|++|.| ||+ .|.++.|+.+++..||+.+........++.+.. .+..+.. +-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 98764 47999999 996 899999999999999998876655555554433 2333333 334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhh----cCChHHHHHHHHHHHHHh
Q 007053 505 TEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR----SVSDADIRKYQAFAQTLQ 580 (620)
Q Consensus 505 ~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p----svs~~di~~~e~~k~~l~ 580 (620)
..++.+|+...-- .... .....|+.+|+.+.+..... .+..++...+..+.+.|+
T Consensus 399 idlldea~a~~~~--~~~~-------------------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~ 457 (758)
T PRK11034 399 IDVIDEAGARARL--MPVS-------------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_pred HHHHHHHHHhhcc--Cccc-------------------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhc
Confidence 6777777653211 0000 00124677777777766542 244555555555555554
Q ss_pred hh
Q 007053 581 QS 582 (620)
Q Consensus 581 ~~ 582 (620)
+.
T Consensus 458 ~~ 459 (758)
T PRK11034 458 ML 459 (758)
T ss_pred ce
Confidence 43
No 57
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.62 E-value=9e-16 Score=131.08 Aligned_cols=79 Identities=38% Similarity=0.600 Sum_probs=67.1
Q ss_pred eeEeccccCC---CCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCC--CCCCCceeeeHhhhcccccccCCe
Q 007053 30 RLVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADD--TCEEPKIRMNKVVRSNLRVRLGDV 104 (620)
Q Consensus 30 ~~~v~~~~~~---~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~--~~~~~~i~~~~~~r~n~~~~~gd~ 104 (620)
+|+|.++..+ ++++|||||++|++||++.||+|+|.|++ +|+|+||+.. +.+.|.|+||+.+|+|||+++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~~--~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGKR--KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETTT--EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCCc--eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5899999843 99999999999999999999999999966 4999999874 348999999999999999999999
Q ss_pred EEEeec
Q 007053 105 VSVHQC 110 (620)
Q Consensus 105 v~v~~~ 110 (620)
|+|+++
T Consensus 79 V~V~~~ 84 (87)
T PF02359_consen 79 VTVRPY 84 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999995
No 58
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.62 E-value=6.3e-15 Score=158.37 Aligned_cols=207 Identities=24% Similarity=0.290 Sum_probs=130.4
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---------hceeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISV 359 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---------~~~i~i 359 (620)
+....+++.|.++.+++|..++...+. + ..+.+++|+||||||||++++++++++. ..++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 344456899999999999888764322 1 2356799999999999999999998763 567888
Q ss_pred cCcceeee----------ec--cc-------c-ccchHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHH
Q 007053 360 KGPELLTM----------WF--GE-------S-EANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 418 (620)
Q Consensus 360 ~~~~l~~~----------~~--g~-------s-e~~i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl 418 (620)
+|....+. .. +. + ...+..++.... ...+.||+|||+|.+... ...++
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L 149 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLL 149 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHH
Confidence 88654321 10 11 0 112334444433 245689999999999721 11255
Q ss_pred HHHhhhhcC-CCCcceEEEEccCCCCC---CCcccccCCCCCC-ceeeeeCCChhHHHHHHHHhhccCC---CCCCcChH
Q 007053 419 NQLLTEMDG-MSAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRKSP---VSKDVDLR 490 (620)
Q Consensus 419 ~~LL~~ld~-~~~~~~viVIatTn~~~---~Ld~al~rpgRf~-~~i~~~~P~~~eR~~Il~~~l~~~~---l~~dv~l~ 490 (620)
.+|+...+. ..+..++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+.... .-.+..+.
T Consensus 150 ~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~ 227 (365)
T TIGR02928 150 YQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIP 227 (365)
T ss_pred HhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHH
Confidence 666554221 12235788888888876 47777766 664 6799999999999999999875211 11122233
Q ss_pred HHHhhc---CCCCCCcHHHHHHHHHHHHHHH
Q 007053 491 ALAKYT---QGFSGADITEICQRACKYAIRE 518 (620)
Q Consensus 491 ~LA~~t---~G~sg~DL~~l~~~A~~~A~~~ 518 (620)
.++..+ .|. .+....+|+.|...|..+
T Consensus 228 ~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 228 LCAALAAQEHGD-ARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHc
Confidence 344433 332 233345677777666543
No 59
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.5e-15 Score=161.64 Aligned_cols=164 Identities=28% Similarity=0.432 Sum_probs=130.3
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee--------
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 365 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-------- 365 (620)
+|-.|++++|+++.|++.-.... |....+-++|+||||+|||+++++||+.++..|++++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999998742211 334567789999999999999999999999999998765443
Q ss_pred -eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc-------------CCCCc
Q 007053 366 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD-------------GMSAK 431 (620)
Q Consensus 366 -~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld-------------~~~~~ 431 (620)
..|+|.....+-+-++......| +++|||||.+... . .++.. +.||..|| ---..
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g--~-qGDPa-------sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG--H-QGDPA-------SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC--C-CCChH-------HHHHHhcChhhccchhhhccccccch
Confidence 46899999999999999988888 9999999999721 1 12322 22333333 11234
Q ss_pred ceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 432 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
.+|++|||+|..+.|+++|+. |+. +|+++-+..++...|-+.|+
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 579999999999999999998 885 99999999999999999987
No 60
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.59 E-value=1.1e-14 Score=158.25 Aligned_cols=207 Identities=24% Similarity=0.323 Sum_probs=131.8
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~ 363 (620)
|....+.+.|-++..++|...+...+.. ..+.+++|+||||||||++++.+++++ +..+++++|..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 3344567889999999988887542211 235679999999999999999999887 46788888864
Q ss_pred eee----------eecc----cc----ccchHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhh
Q 007053 364 LLT----------MWFG----ES----EANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 424 (620)
Q Consensus 364 l~~----------~~~g----~s----e~~i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ 424 (620)
..+ ...+ .. ...+..+++... ...+.||+|||+|.+.... ...++..|+..
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~ 165 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRA 165 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHh
Confidence 321 1111 01 111222222222 2346899999999997211 12356677666
Q ss_pred hcCCCCcceEEEEccCCCCC---CCcccccCCCCC-CceeeeeCCChhHHHHHHHHhhccCC---CCCCcChHHHHhhcC
Q 007053 425 MDGMSAKKTVFIIGATNRPD---IIDPALLRPGRL-DQLIYIPLPDEESRLQIFKACLRKSP---VSKDVDLRALAKYTQ 497 (620)
Q Consensus 425 ld~~~~~~~viVIatTn~~~---~Ld~al~rpgRf-~~~i~~~~P~~~eR~~Il~~~l~~~~---l~~dv~l~~LA~~t~ 497 (620)
++... ..++.+|+++|..+ .+++.+.+ || ...+.|++++.++..+|++.+++... .-.+..++.+++.+.
T Consensus 166 ~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 242 (394)
T PRK00411 166 HEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTA 242 (394)
T ss_pred hhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHH
Confidence 65443 23677788877654 46666655 55 35789999999999999998875321 112333567777775
Q ss_pred CCCCCcHH---HHHHHHHHHHHHH
Q 007053 498 GFSGADIT---EICQRACKYAIRE 518 (620)
Q Consensus 498 G~sg~DL~---~l~~~A~~~A~~~ 518 (620)
+.+ +|+. .+|..|+..|..+
T Consensus 243 ~~~-Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 243 REH-GDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred Hhc-CcHHHHHHHHHHHHHHHHHc
Confidence 433 3443 6666666665543
No 61
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-14 Score=160.64 Aligned_cols=171 Identities=29% Similarity=0.369 Sum_probs=130.3
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee--------
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 365 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-------- 365 (620)
.|-.|++++|+++.|++.-.... .--...-++|+||||+|||+|++++|+.++..|+.++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 46789999999999998742211 112345688999999999999999999999999999865443
Q ss_pred -eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHH--HHHhhhhcCC----CCcceEEEEc
Q 007053 366 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL--NQLLTEMDGM----SAKKTVFIIG 438 (620)
Q Consensus 366 -~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl--~~LL~~ld~~----~~~~~viVIa 438 (620)
..|+|.....+-+-..+|....| +++|||||.+...-. ++..++..+++ .|=-+..|.. -..+.|++|+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia 471 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA 471 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CChHHHHHhhcCHhhcCchhhccccCccchhheEEEe
Confidence 36899999999999999998888 999999999975422 23222222222 0101111111 2235799999
Q ss_pred cCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 439 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 439 tTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
|+|..+.++.+|+. |+. +|++.-++.++..+|-+.|+
T Consensus 472 TANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 99999999999998 885 99999999999999999987
No 62
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.58 E-value=3.8e-14 Score=165.08 Aligned_cols=205 Identities=22% Similarity=0.342 Sum_probs=140.9
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee-------
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------- 365 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~------- 365 (620)
-.+..|++++|+++.+++..... .+......++|+||||||||++++.+|..++.+|+.+++....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 34689999999999988774221 1112345799999999999999999999999999888765432
Q ss_pred --eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC-------------CC
Q 007053 366 --TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------SA 430 (620)
Q Consensus 366 --~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~-------------~~ 430 (620)
..|.|.....+.+.+..+....| ||||||+|.+.+..+. + ..+.|+..+|.- ..
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---~-------~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---D-------PASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---C-------HHHHHHHHhccccEEEEeccccccccc
Confidence 24666666677777776665555 8999999998753221 1 234555555421 12
Q ss_pred cceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc-----CCCC-C--CcC---hHHHHhh-cCC
Q 007053 431 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-----SPVS-K--DVD---LRALAKY-TQG 498 (620)
Q Consensus 431 ~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~-----~~l~-~--dv~---l~~LA~~-t~G 498 (620)
.+++++|+|+|.. .|+++|+. ||. +|.+..++.++..+|.+.++-. ..+. . .++ +..+++. +..
T Consensus 463 ls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e 538 (784)
T PRK10787 463 LSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTRE 538 (784)
T ss_pred CCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcc
Confidence 3678999999987 59999998 995 8999999999999999998831 1111 1 111 3444432 223
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q 007053 499 FSGADITEICQRACKYAIREN 519 (620)
Q Consensus 499 ~sg~DL~~l~~~A~~~A~~~~ 519 (620)
+-.+.|+.++++.+..++.+.
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHH
Confidence 334777777776655555443
No 63
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=1.5e-14 Score=162.62 Aligned_cols=195 Identities=25% Similarity=0.346 Sum_probs=130.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~ 358 (620)
.+.+|+++.|.+..++.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 456899999999999999866432 235679999999999999999998753 357888
Q ss_pred ecCccee-------eeecccccc----------------chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchh
Q 007053 359 VKGPELL-------TMWFGESEA----------------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAAD 415 (620)
Q Consensus 359 i~~~~l~-------~~~~g~se~----------------~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~ 415 (620)
++|.... ...++.... .....+..+ ...+|||||++.|.+..
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~------------ 191 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQ------------ 191 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHH------------
Confidence 8876321 011111000 001122222 23599999999986432
Q ss_pred HHHHHHhhhhcC---------------------------CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChh
Q 007053 416 RVLNQLLTEMDG---------------------------MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 468 (620)
Q Consensus 416 rvl~~LL~~ld~---------------------------~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~ 468 (620)
.+.|+..|+. ..+.+..+|++||+.++.|+|++++ |+. .++|++++.+
T Consensus 192 --q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~e 266 (531)
T TIGR02902 192 --MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDE 266 (531)
T ss_pred --HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHH
Confidence 2333333321 0111234566777889999999998 875 7889999999
Q ss_pred HHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q 007053 469 SRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRE 518 (620)
Q Consensus 469 eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~ 518 (620)
++.+|++..+++..+.- +..++.++..+ ++++++.++++.|+..|..+
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~ 315 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE 315 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC
Confidence 99999999987655431 22355566554 37899999999988777543
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.1e-14 Score=160.71 Aligned_cols=193 Identities=21% Similarity=0.251 Sum_probs=132.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee--eecC------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI--SVKG------ 361 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i--~i~~------ 361 (620)
+.+|++|.|.+.+++.|+.++.. -..++.+||+||+|||||++++++|+.+++..- ...|
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 45899999999999999988764 123567899999999999999999998865210 0000
Q ss_pred --------cceeee--eccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 362 --------PELLTM--WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 362 --------~~l~~~--~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
.+++.- .....-..++++++.+.. ....|+||||+|.|.. ...+.||..|+.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NALLKtLEE 145 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAMLKTLEE 145 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHHHHHHHh
Confidence 111100 000112235566655432 3346999999999852 246778888875
Q ss_pred CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHH
Q 007053 428 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~ 506 (620)
. ..++.+|.+||.++.|.+.+++ || ..|.|..++.++..+.|+..+....+. .+..+..|++.+.|- .++..+
T Consensus 146 P--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdALs 219 (830)
T PRK07003 146 P--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MRDALS 219 (830)
T ss_pred c--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 3 3357777788889999999988 88 489999999999999999988665543 233466777777763 455556
Q ss_pred HHHHHHHH
Q 007053 507 ICQRACKY 514 (620)
Q Consensus 507 l~~~A~~~ 514 (620)
++.++..+
T Consensus 220 LLdQAia~ 227 (830)
T PRK07003 220 LTDQAIAY 227 (830)
T ss_pred HHHHHHHh
Confidence 66665543
No 65
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=2e-14 Score=169.45 Aligned_cols=165 Identities=21% Similarity=0.366 Sum_probs=127.2
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeeec
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 360 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i~ 360 (620)
-.++.+.|.+...+++.+.+.. ....+++|+||||||||++|+++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3577899999888877776654 234679999999999999999999987 66788888
Q ss_pred Cccee--eeeccccccchHHHHHhhhc-cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 361 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 361 ~~~l~--~~~~g~se~~i~~if~~A~~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
...++ .+|.|+.+..++.+|..+.. ..++||||||+|.|.+.+... + . ....+.|...+ .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~----~-~d~~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-G----A-MDAGNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-c----c-hhHHHHhcchh----hcCCCeEE
Confidence 77766 56888999999999988644 568999999999998654321 1 1 11222233322 35678999
Q ss_pred ccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC
Q 007053 438 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 481 (620)
Q Consensus 438 atTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~ 481 (620)
++|+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+....
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9998776 48999999 997 68899999999999998876543
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.6e-14 Score=158.44 Aligned_cols=187 Identities=23% Similarity=0.327 Sum_probs=132.7
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 355 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------------- 355 (620)
.+.+|++|+|.+.+++.|+.++..- ..++.+||+||+|||||++|+.+|+.+.+.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3558999999999999999888741 235678999999999999999999988651
Q ss_pred ----------------eeeecCcceeeeeccccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchh
Q 007053 356 ----------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAAD 415 (620)
Q Consensus 356 ----------------~i~i~~~~l~~~~~g~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~ 415 (620)
++.++... ...-..++++.+.+. .....|+||||+|.|..
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-------------- 138 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-------------- 138 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------
Confidence 11221110 011233555555443 23457999999999852
Q ss_pred HHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHh
Q 007053 416 RVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAK 494 (620)
Q Consensus 416 rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~ 494 (620)
...+.||..|+.- ..++++|.+||.++.|.+.+++ || ..+.|..++.++..+.|+.++....+..+. .+..|++
T Consensus 139 ~AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467788888753 3467777888889999999998 88 589999999999999999887655443222 2566777
Q ss_pred hcCCCCCCcHHHHHHHHHH
Q 007053 495 YTQGFSGADITEICQRACK 513 (620)
Q Consensus 495 ~t~G~sg~DL~~l~~~A~~ 513 (620)
.+.| +.++..+++.++..
T Consensus 214 ~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 214 AAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 7665 45666666665543
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=2.1e-14 Score=168.96 Aligned_cols=185 Identities=22% Similarity=0.353 Sum_probs=134.0
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh----------hceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~----------~~~i~i 359 (620)
+-.++++.|.+...+++.+.+.. ....+++|+||||||||++|+.+|+.+. .+++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 44678899999887777766553 2345799999999999999999999863 446666
Q ss_pred cCccee--eeeccccccchHHHHHhhhc-cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEE
Q 007053 360 KGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 436 (620)
Q Consensus 360 ~~~~l~--~~~~g~se~~i~~if~~A~~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viV 436 (620)
+...+. ..|.|+.+..++.+|+.++. ..++||||||+|.|.+.++.. +. .. .-+.|+..+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~~-~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-GQ-GD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-cc-cc----HHHHhhHHh----hCCCeEE
Confidence 666665 36788889999999999865 467899999999998654321 11 11 112233333 3567889
Q ss_pred EccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-----CCcChHHHHhhcCCCC
Q 007053 437 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-----KDVDLRALAKYTQGFS 500 (620)
Q Consensus 437 IatTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-----~dv~l~~LA~~t~G~s 500 (620)
|+||+..+ .+|++|.| ||. .|.++.|+.+++..||+.+.+..... .+..+..++..+.+|-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99997643 48999999 996 89999999999999987665432211 2334667777777664
No 68
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.53 E-value=8e-14 Score=164.44 Aligned_cols=186 Identities=26% Similarity=0.376 Sum_probs=138.2
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh----------hceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~----------~~~i~i 359 (620)
.-.|+.+.|.++.++++.+.+.. ....+++|+||||||||++|+++|..+. .+++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34688899999999999888764 2456899999999999999999999863 578888
Q ss_pred cCccee--eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 360 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 360 ~~~~l~--~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
+...++ .+|.|+.+..++.+|+.+....++||||||+|.|.+..+.. ++ . .+.+.|...+ .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~--~---~~a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA--I---DAANILKPAL----ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc--c---cHHHHhHHHH----hCCCcEEE
Confidence 888776 57889999999999999988888999999999998654321 11 1 1222222222 24568888
Q ss_pred ccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc----CCCC-CCcChHHHHhhcCCCCC
Q 007053 438 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK----SPVS-KDVDLRALAKYTQGFSG 501 (620)
Q Consensus 438 atTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~----~~l~-~dv~l~~LA~~t~G~sg 501 (620)
++|+..+ ..|+++.+ ||. .+.++.|+.++...|++..... ..+. .+..+..++..+.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 8887653 47899998 997 6899999999999998765421 2221 23336677777777654
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.53 E-value=1.6e-13 Score=150.18 Aligned_cols=150 Identities=29% Similarity=0.470 Sum_probs=110.4
Q ss_pred ccccccccchHHHHHH---HHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 290 NVNWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~---L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
+.+++++.|.+..... |++++.. ....++||+||||||||++|+++|+.++..|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 3568899999988665 7777653 124579999999999999999999999999998887532
Q ss_pred eeccccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC--
Q 007053 367 MWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 440 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT-- 440 (620)
....++.+++.+. .....+|||||+|.+... ..+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--------------~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--------------QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH--------------HHHHHHHHhhc----CcEEEEEeCCC
Confidence 2234566666653 235679999999997532 23445555542 345566554
Q ss_pred CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 441 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 441 n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
|....+++++++ || ..+.|++++.++...+++..+..
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 334578899988 88 58999999999999999987754
No 70
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.1e-14 Score=153.08 Aligned_cols=173 Identities=19% Similarity=0.251 Sum_probs=121.7
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 355 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------------- 355 (620)
.+.+|+++.|.+.+.+.|+.++... ..++.+||+||||||||++|+.+|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3558999999999999998887641 234569999999999999999999988652
Q ss_pred -----------eeeecCcceeeeeccccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHH
Q 007053 356 -----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 420 (620)
Q Consensus 356 -----------~i~i~~~~l~~~~~g~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~ 420 (620)
|+.+++.. ...-..++++.+.+. .+...|+||||+|.|.. ..++.
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--------------~A~NA 140 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--------------QSFNA 140 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------------HHHHH
Confidence 12222110 011223455444433 23456999999999852 35677
Q ss_pred HhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCC
Q 007053 421 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 421 LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G 498 (620)
||..|+. +...+++|.+|+.++.|.+.+++ |+. .+.|..++.++..+.++..+....+. .+..+..||+.+.|
T Consensus 141 LLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 141 LLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888864 33567888888889999999998 885 78999999999989998887654432 22235556655554
No 71
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=7.9e-14 Score=152.29 Aligned_cols=172 Identities=22% Similarity=0.347 Sum_probs=113.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcceeeeeccccc-cchHHHHHhhhccCCeeeeeccchhHHh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~l~~~~~g~se-~~i~~if~~A~~~~p~IL~iDEiD~l~~ 401 (620)
..+++||||+|+|||+|++++++++ +..++++++.++...+..... ..+..+.+..+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4569999999999999999999987 456888888776544332211 12222222222 256999999999863
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC---CcccccCCCCCC--ceeeeeCCChhHHHHHHHH
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~---Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~ 476 (620)
+. .....|+..++.....+..+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 214 ~~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 KE------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CH------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 21 112234444433323344566666666654 5677876 875 5899999999999999999
Q ss_pred hhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHH
Q 007053 477 CLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 516 (620)
Q Consensus 477 ~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~ 516 (620)
.++...+. .+..++.||+...+ +.++|..++.+....|.
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 98765443 23346778877753 56777777776665554
No 72
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=5.9e-14 Score=151.64 Aligned_cols=191 Identities=23% Similarity=0.340 Sum_probs=128.9
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce---------------
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF--------------- 356 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~--------------- 356 (620)
.|++|+|++.+++.|+.++.....+. ..++...++.+||+||||+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999998755432 223444678899999999999999999998764431
Q ss_pred eeecCcceeeeec-c--ccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC
Q 007053 357 ISVKGPELLTMWF-G--ESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 429 (620)
Q Consensus 357 i~i~~~~l~~~~~-g--~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~ 429 (620)
..-+.+++.--.. + -.-..++++++.+.. ....|+||||+|.+... ..+.||..|+...
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------------aanaLLk~LEep~ 145 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------------AANALLKAVEEPP 145 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------------HHHHHHHHhhcCC
Confidence 1111222211000 0 112346777776654 33469999999998532 3467888887543
Q ss_pred CcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHH
Q 007053 430 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEIC 508 (620)
Q Consensus 430 ~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~ 508 (620)
...++|++|++ ++.+.|.+++ |+ ..++|++|+.++..++|.... .+. ......++..+.|..+..+..+.
T Consensus 146 -~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 146 -PRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred -CCCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 23445554444 8899999998 87 499999999999888886432 222 23356778888887776555443
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=1.2e-13 Score=154.08 Aligned_cols=190 Identities=25% Similarity=0.336 Sum_probs=131.3
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 369 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~ 369 (620)
+.+++++.|.+.++++|+.++..... | .+++++|||||||||||++|+++|++++.+++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 44789999999999999998864221 1 23678999999999999999999999999999999876432
Q ss_pred cccccchHHHHHhhhc------cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 370 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 370 g~se~~i~~if~~A~~------~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
...++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++. ....+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1223333332221 246799999999986421 11234556666652 223455577888
Q ss_pred CCCcc-cccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 444 DIIDP-ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 444 ~~Ld~-al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
..+.+ .+++ |+ ..+.|++|+..++..+++.++....+. .+..+..|++.+ ++|+..+++.....+
T Consensus 141 ~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHh
Confidence 77776 5554 44 589999999999999999988665443 122356666655 458887776655433
No 74
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=7.4e-14 Score=165.23 Aligned_cols=185 Identities=21% Similarity=0.365 Sum_probs=135.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i 359 (620)
+-.++.+.|.+...+++.+.+.. ....+++|+||||||||++++++|..+ +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34677899999888887776654 235678999999999999999999886 5567777
Q ss_pred cCccee--eeeccccccchHHHHHhhhc-cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEE
Q 007053 360 KGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 436 (620)
Q Consensus 360 ~~~~l~--~~~~g~se~~i~~if~~A~~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viV 436 (620)
+...++ .+|.|+.+..++.+|..+.. ..|+||||||+|.|.+.+... +. ....+.|...+ ..+.+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPAL----ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchhh----hcCceEE
Confidence 777665 46888889999999998865 358999999999998643221 11 11223333222 3567889
Q ss_pred EccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-----ChHHHHhhcCCCC
Q 007053 437 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-----DLRALAKYTQGFS 500 (620)
Q Consensus 437 IatTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-----~l~~LA~~t~G~s 500 (620)
|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+.........+ .+...+..+.+|-
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 99988663 47999999 996 68999999999999999876665443333 3555566666554
No 75
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.50 E-value=8.9e-14 Score=153.83 Aligned_cols=201 Identities=20% Similarity=0.327 Sum_probs=125.6
Q ss_pred cccccccc-cc--hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeec
Q 007053 289 PNVNWEDI-GG--LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVK 360 (620)
Q Consensus 289 p~v~~~di-~G--l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~ 360 (620)
+..+|++. .| ...+...++++..+| + ....+++||||||||||+|++++++++ +..+++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 45566663 23 233555555554432 1 123569999999999999999999987 34578888
Q ss_pred CcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 361 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 361 ~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
+.++...+..........-|..... .+.+|+|||++.+..+. .....|+..++.+...+..+||+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~------------~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE------------RTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH------------HHHHHHHHHHHHHHHCCCcEEEECC
Confidence 8777654433322211222332222 46799999999986322 1223344444333333445666666
Q ss_pred CCCCC---CcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHH
Q 007053 441 NRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKY 514 (620)
Q Consensus 441 n~~~~---Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~ 514 (620)
..|.. +++.+.+ ||. ..+.+.+|+.++|..||+..+....+. ++..++.||..+.| +.++|..++......
T Consensus 253 ~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 253 RPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred CCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 66654 6688887 885 589999999999999999998754332 22236777777654 456666666655544
Q ss_pred HH
Q 007053 515 AI 516 (620)
Q Consensus 515 A~ 516 (620)
+.
T Consensus 330 ~~ 331 (450)
T PRK00149 330 AS 331 (450)
T ss_pred HH
Confidence 43
No 76
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=3.3e-13 Score=146.61 Aligned_cols=222 Identities=23% Similarity=0.297 Sum_probs=140.7
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhh---cCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee-eeeccc
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEK---FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGE 371 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~---~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-~~~~g~ 371 (620)
|.|++.+++.|...+............ -...+..++||+||||||||++|+++|+.++.+|+.+++..+. ..|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 889999999987666432211100000 0012357899999999999999999999999999999998875 357776
Q ss_pred cccc-hHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEE
Q 007053 372 SEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 435 (620)
Q Consensus 372 se~~-i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~vi 435 (620)
.... +..++..+ ....++||||||||.+.......+.........+.+.||..|++.. +....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 5433 34444332 2345789999999999876332211111122357788888887531 112355
Q ss_pred EEccCCCCC----------------------------------------------------CCcccccCCCCCCceeeee
Q 007053 436 IIGATNRPD----------------------------------------------------IIDPALLRPGRLDQLIYIP 463 (620)
Q Consensus 436 VIatTn~~~----------------------------------------------------~Ld~al~rpgRf~~~i~~~ 463 (620)
+|.|+|-.. -+.|+|+ ||++.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 666665410 0233443 6999999999
Q ss_pred CCChhHHHHHHHH----hhcc-------CCCC---CCcChHHHHhh--cCCCCCCcHHHHHHHHHHHHHHHH
Q 007053 464 LPDEESRLQIFKA----CLRK-------SPVS---KDVDLRALAKY--TQGFSGADITEICQRACKYAIREN 519 (620)
Q Consensus 464 ~P~~~eR~~Il~~----~l~~-------~~l~---~dv~l~~LA~~--t~G~sg~DL~~l~~~A~~~A~~~~ 519 (620)
+++.++...|+.. .++. ..+. .+.-+..|++. ..++-.+-|+.++++...-.+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999973 2221 1111 12225667765 334556788888877776666543
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.1e-13 Score=152.69 Aligned_cols=186 Identities=22% Similarity=0.300 Sum_probs=130.4
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc--------------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 355 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~-------------- 355 (620)
+.+|+++.|.+.+++.|+.++.. -..++.+||+||+|||||++|+++|+.+++.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 45899999999999999988873 1235788999999999999999999988652
Q ss_pred ----------eeeecCcceeeeeccccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHH
Q 007053 356 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 421 (620)
Q Consensus 356 ----------~i~i~~~~l~~~~~g~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~L 421 (620)
++.+++++ ...-..++++...+. .+...|+||||+|.|.. ...+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHHH
Confidence 22222211 011234556555442 23456999999999853 245678
Q ss_pred hhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCC
Q 007053 422 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 500 (620)
Q Consensus 422 L~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~s 500 (620)
+..|+... ..+.+|.+|+.+..+.+.+++ |+. .+.|.+++.++....++..+....+.- +..+..|++.+.| +
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887543 345666677778888888876 884 899999999999999999887655432 2336677777654 5
Q ss_pred CCcHHHHHHHHHH
Q 007053 501 GADITEICQRACK 513 (620)
Q Consensus 501 g~DL~~l~~~A~~ 513 (620)
.+++.+++..+..
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666655543
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4e-13 Score=148.46 Aligned_cols=173 Identities=20% Similarity=0.327 Sum_probs=119.8
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh--------------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 354 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~-------------- 354 (620)
.+.+|+++.|.+.+++.|+..+... ..++.+|||||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 4568999999999999988877641 23567999999999999999999998764
Q ss_pred ----------ceeeecCcceeeeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHH
Q 007053 355 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 420 (620)
Q Consensus 355 ----------~~i~i~~~~l~~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~ 420 (620)
.++.++++. ...-..++++.+.+.. ....||||||+|.|.. ..++.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~ 136 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNA 136 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHH
Confidence 122232211 0112234555544432 2346999999999863 23566
Q ss_pred HhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCC
Q 007053 421 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 421 LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G 498 (620)
|+..++... ..+++|++|+.+..+++++++ |+. .+.|.+++.++...+++..+....+. .+..+..|++.+.|
T Consensus 137 LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 137 LLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 777776533 346666666667789999988 875 89999999999999999887654332 22236677776653
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=3.3e-13 Score=155.18 Aligned_cols=191 Identities=20% Similarity=0.236 Sum_probs=129.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee-e----ecC--
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI-S----VKG-- 361 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i-~----i~~-- 361 (620)
.+.+|++|.|.+.+++.|+.++... +.++.+||+||||||||++|+++|+.+++... . -.|
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 3468999999999999999887641 23556799999999999999999999866310 0 000
Q ss_pred ---------cceeeeeccc---cccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 362 ---------PELLTMWFGE---SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 362 ---------~~l~~~~~g~---se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
.+++ .+-+. .-..+|++.+.+. .+...|+||||+|.|. ...++.||..|
T Consensus 79 C~~i~~g~~~Dvi-EidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLKtL 143 (944)
T PRK14949 79 CVEIAQGRFVDLI-EVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLKTL 143 (944)
T ss_pred HHHHhcCCCceEE-EeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHHHH
Confidence 1111 01111 1123555554433 2334699999999985 23578888888
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcH
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADI 504 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL 504 (620)
+.. ...+++|++|+.+..|.+.+++ |+ ..+.|.+++.++....|+..+....+.- +..+..|++.+.| +.+++
T Consensus 144 EEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~A 217 (944)
T PRK14949 144 EEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDA 217 (944)
T ss_pred hcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 754 3345566667778888888887 87 4899999999999999998886544322 2235667777665 45666
Q ss_pred HHHHHHHH
Q 007053 505 TEICQRAC 512 (620)
Q Consensus 505 ~~l~~~A~ 512 (620)
.++|..+.
T Consensus 218 LnLLdQal 225 (944)
T PRK14949 218 LSLTDQAI 225 (944)
T ss_pred HHHHHHHH
Confidence 67776655
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=7.1e-13 Score=150.19 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=129.9
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee--ecC------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS--VKG------ 361 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~--i~~------ 361 (620)
+.+|++|.|.+.+++.|+..+.. + ..++.+||+||+|||||++|+++|+.+.+.... -.|
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 46899999999999999888774 1 235668999999999999999999998763110 000
Q ss_pred --------cceeeeeccc---cccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 362 --------PELLTMWFGE---SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 362 --------~~l~~~~~g~---se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
++++. +-+. .-..++++.+.+. .+...|+||||+|.|.. ...+.||..|+
T Consensus 80 ~~i~~g~~~D~ie-idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--------------~a~NALLKtLE 144 (647)
T PRK07994 80 REIEQGRFVDLIE-IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLE 144 (647)
T ss_pred HHHHcCCCCCcee-ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------------HHHHHHHHHHH
Confidence 11110 0011 1223555544432 23456999999999852 35678888887
Q ss_pred CCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHH
Q 007053 427 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADIT 505 (620)
Q Consensus 427 ~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~ 505 (620)
.- ...+++|.+|+.+..|.+.+++ |+ ..+.|..++.++....|+..++...+.. +..+..|+..+.| +.++..
T Consensus 145 EP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al 218 (647)
T PRK07994 145 EP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDAL 218 (647)
T ss_pred cC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 53 3456666667778899999988 86 5899999999999999998886544332 2335667777665 455666
Q ss_pred HHHHHHH
Q 007053 506 EICQRAC 512 (620)
Q Consensus 506 ~l~~~A~ 512 (620)
+++..|.
T Consensus 219 ~lldqai 225 (647)
T PRK07994 219 SLTDQAI 225 (647)
T ss_pred HHHHHHH
Confidence 6665554
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.45 E-value=3.8e-13 Score=138.43 Aligned_cols=151 Identities=25% Similarity=0.468 Sum_probs=105.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhc---eeeecCcceeeeeccccccchHHHHHhhhc-----cCCeeeeeccchhH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELDSI 399 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~---~i~i~~~~l~~~~~g~se~~i~~if~~A~~-----~~p~IL~iDEiD~l 399 (620)
-..++||||||||||+||+.|+.....+ |+++++.. ..-..+|.+|+.++. ....|||||||+++
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh
Confidence 4579999999999999999999887655 77666533 234568999998875 34689999999998
Q ss_pred HhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC--CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHh
Q 007053 400 ATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 477 (620)
Q Consensus 400 ~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT--n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~ 477 (620)
...++. .||-.+ +.+.+++|++| |..-.|..+|++ |+. ++.+.....+....||.+-
T Consensus 235 NksQQD--------------~fLP~V----E~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 235 NKSQQD--------------TFLPHV----ENGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hhhhhh--------------ccccee----ccCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHH
Confidence 754332 244433 25678888777 555578899998 774 7888888889988888874
Q ss_pred hc---c-C----CCCC------CcChHHHHhhcCCCCCCcHHH
Q 007053 478 LR---K-S----PVSK------DVDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 478 l~---~-~----~l~~------dv~l~~LA~~t~G~sg~DL~~ 506 (620)
.. + . ++.. +--++.|+..++|-..+.|..
T Consensus 294 ia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~ 336 (554)
T KOG2028|consen 294 IASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA 336 (554)
T ss_pred HHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 32 1 1 1211 112667777777765544443
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.45 E-value=7.9e-13 Score=140.32 Aligned_cols=190 Identities=23% Similarity=0.343 Sum_probs=121.5
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-----hceeeecCcce
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 364 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~~~l 364 (620)
+.+|+++.|.+.+++.|..++... ..+++||+||||||||++|+++++++. .+++.+++.++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 446899999999999998887641 123699999999999999999999874 34677887665
Q ss_pred eeeec-------------cc-------cccchHHHHHhhhc-----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHH
Q 007053 365 LTMWF-------------GE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 419 (620)
Q Consensus 365 ~~~~~-------------g~-------se~~i~~if~~A~~-----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~ 419 (620)
..... +. ....++.+...... ..+.+|+|||+|.+... ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~--------------~~~ 143 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED--------------AQQ 143 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------------HHH
Confidence 32210 00 01122222222211 23469999999987421 233
Q ss_pred HHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCC
Q 007053 420 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 420 ~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G 498 (620)
.|...++..... ..+ |.+++.+..+.+.+.+ |+ ..+.+.+|+.++...+++..++...+. .+..+..|+..+
T Consensus 144 ~L~~~le~~~~~-~~~-Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSRT-CRF-IIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccCC-CeE-EEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 455555543332 233 4455555667777776 66 478999999999999999988665443 222355566554
Q ss_pred CCCCcHHHHHHHHHHHH
Q 007053 499 FSGADITEICQRACKYA 515 (620)
Q Consensus 499 ~sg~DL~~l~~~A~~~A 515 (620)
++++..++......+
T Consensus 217 --~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 217 --GGDLRKAILTLQTAA 231 (337)
T ss_pred --CCCHHHHHHHHHHHH
Confidence 567777766554433
No 83
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.45 E-value=9.9e-13 Score=149.14 Aligned_cols=193 Identities=18% Similarity=0.255 Sum_probs=126.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh----------hceee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFIS 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~----------~~~i~ 358 (620)
+..-.+.|.|.++.+++|..++...+.. ..+...++|+|+||||||++++.+.+++. +.+++
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVY 821 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFE 821 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEE
Confidence 3344578999999999999888754422 22334457999999999999999988762 56789
Q ss_pred ecCcceeeee----------ccc-------cccchHHHHHhhh--ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHH
Q 007053 359 VKGPELLTMW----------FGE-------SEANVREIFDKAR--QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 419 (620)
Q Consensus 359 i~~~~l~~~~----------~g~-------se~~i~~if~~A~--~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~ 419 (620)
|+|..+...+ .+. +...+..+|.... .....||+|||||.|... ...++.
T Consensus 822 INCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLY 890 (1164)
T PTZ00112 822 INGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLF 890 (1164)
T ss_pred EeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHH
Confidence 9986543211 011 1233455665542 233579999999999742 123455
Q ss_pred HHhhhhcCCCCcceEEEEccCCC---CCCCcccccCCCCCCc-eeeeeCCChhHHHHHHHHhhccCC-CCCCcChHHHHh
Q 007053 420 QLLTEMDGMSAKKTVFIIGATNR---PDIIDPALLRPGRLDQ-LIYIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAK 494 (620)
Q Consensus 420 ~LL~~ld~~~~~~~viVIatTn~---~~~Ld~al~rpgRf~~-~i~~~~P~~~eR~~Il~~~l~~~~-l~~dv~l~~LA~ 494 (620)
.|+.... .....++||+.+|. ++.|++.+++ ||.. .+.|++++.+++.+||+..+.... +-.+..++.+|+
T Consensus 891 nLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 891 TLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred HHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 5555433 23457889999986 4457788876 6643 588899999999999999887532 112223666666
Q ss_pred hcCCCCCCcHH
Q 007053 495 YTQGFSGADIT 505 (620)
Q Consensus 495 ~t~G~sg~DL~ 505 (620)
.+... .+|++
T Consensus 967 kVAq~-SGDAR 976 (1164)
T PTZ00112 967 KVANV-SGDIR 976 (1164)
T ss_pred hhhhc-CCHHH
Confidence 55533 34554
No 84
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=5.2e-13 Score=143.69 Aligned_cols=191 Identities=21% Similarity=0.271 Sum_probs=127.0
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeee----------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV---------- 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i---------- 359 (620)
+.+|+++.|++.+++.|+..+.. + ..++.+||+||||+|||++|+++|+.+.+.....
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 46899999999999999888764 1 2356789999999999999999999886421100
Q ss_pred ------cCcceeeeec--cccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 360 ------KGPELLTMWF--GESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 360 ------~~~~l~~~~~--g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
...++..-.. ...-..++++.+.+.. ....|+||||+|.+.. ...+.|+..++.
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------------~a~naLLk~lEe 145 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------------HSFNALLKTLEE 145 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------------HHHHHHHHHHhc
Confidence 0011211000 0112335555554432 2346999999998742 245667777775
Q ss_pred CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHH
Q 007053 428 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~ 506 (620)
.. ..+.+|.+|+.++.+.+.+++ |+ ..+.|++|+.++..++++..++..... .+..+..++..+.| +.+++.+
T Consensus 146 ~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~ 219 (363)
T PRK14961 146 PP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALN 219 (363)
T ss_pred CC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 43 345555566777888888887 77 489999999999999999888665432 22345667777765 4566666
Q ss_pred HHHHHH
Q 007053 507 ICQRAC 512 (620)
Q Consensus 507 l~~~A~ 512 (620)
++..+.
T Consensus 220 ~l~~~~ 225 (363)
T PRK14961 220 LLEHAI 225 (363)
T ss_pred HHHHHH
Confidence 665554
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=6.4e-13 Score=148.26 Aligned_cols=188 Identities=20% Similarity=0.256 Sum_probs=131.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 355 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------------- 355 (620)
.+.+|+|+.|.+.+++.|+.++... ..++.+||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 3458999999999999999888641 235678999999999999999999988652
Q ss_pred -----------eeeecCcceeeeeccccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHH
Q 007053 356 -----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 420 (620)
Q Consensus 356 -----------~i~i~~~~l~~~~~g~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~ 420 (620)
++.+++.. ...-..++++.+.+. .+...|+||||+|.|.. ...+.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~na 138 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFNA 138 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHHH
Confidence 22232211 111223555554433 23346999999999863 24677
Q ss_pred HhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCC
Q 007053 421 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGF 499 (620)
Q Consensus 421 LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~ 499 (620)
|+..|+... ..+.+|.+|+.+..+.+.+++ |+ ..++|..++.++....++..++...+.- +..+..+++.+.|
T Consensus 139 LLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888887643 345566666777888888887 77 4788999999998888888886654432 2336677777754
Q ss_pred CCCcHHHHHHHHHHH
Q 007053 500 SGADITEICQRACKY 514 (620)
Q Consensus 500 sg~DL~~l~~~A~~~ 514 (620)
+.+++.+++..+...
T Consensus 213 slR~al~lLdq~ia~ 227 (509)
T PRK14958 213 SVRDALSLLDQSIAY 227 (509)
T ss_pred cHHHHHHHHHHHHhc
Confidence 567777777766543
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=6.7e-13 Score=147.32 Aligned_cols=195 Identities=21% Similarity=0.294 Sum_probs=135.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee----------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---------- 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~---------- 358 (620)
.+.+|+|+.|.+.+.+.|+..+.. -..++.+||+||||||||++|+++|+.+++..-.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 456899999999999999886653 1236789999999999999999999988652100
Q ss_pred --ecC--------cceeeee--ccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHh
Q 007053 359 --VKG--------PELLTMW--FGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 422 (620)
Q Consensus 359 --i~~--------~~l~~~~--~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL 422 (620)
-+| +++..-. .......++.+++.+.. +...|+||||+|.+.. ..++.|+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~naLL 149 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNALL 149 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------HHHHHHH
Confidence 001 1111100 01123456777766643 2346999999998752 2466778
Q ss_pred hhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCCC
Q 007053 423 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 501 (620)
Q Consensus 423 ~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~sg 501 (620)
..|+.. ...+++|.+|+.++.+.+.+++ |+ ..++|..++.++...+++..++.....-+ ..+..+++.+.| +.
T Consensus 150 k~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777743 3355666667778889999987 77 47999999999999999999876554322 336778887765 66
Q ss_pred CcHHHHHHHHHHHH
Q 007053 502 ADITEICQRACKYA 515 (620)
Q Consensus 502 ~DL~~l~~~A~~~A 515 (620)
+++.+++..+...+
T Consensus 224 R~al~~Ldkai~~~ 237 (507)
T PRK06645 224 RDAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777765543
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.43 E-value=1e-12 Score=151.63 Aligned_cols=149 Identities=28% Similarity=0.440 Sum_probs=105.1
Q ss_pred ccccccccchHHHHH---HHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 290 NVNWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~---~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
+.+++++.|.+.... .|++++.. ....++|||||||||||++|+++|+.++.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 457899999988874 45555542 223579999999999999999999999999988886531
Q ss_pred eeccccccchHHHHHhhh-----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC-
Q 007053 367 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT- 440 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~-----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT- 440 (620)
....++.++..+. .....+|||||+|.+... ..+.|+..++ ...+++|++|
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecC
Confidence 1122344444331 124569999999997532 1234555554 3456666655
Q ss_pred -CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhc
Q 007053 441 -NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 441 -n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~ 479 (620)
|....+++++++ |+ ..+.|++++.+++..+++..+.
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 333468889987 65 4799999999999999999886
No 88
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.1e-12 Score=152.98 Aligned_cols=190 Identities=21% Similarity=0.231 Sum_probs=125.9
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee-------e----
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI-------S---- 358 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i-------~---- 358 (620)
..+|++|.|.+.+++.|+.++.. + ..++.+||+||+|||||++|+.||+.+.+.-- .
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 45899999999999999988764 1 23456899999999999999999999864210 0
Q ss_pred --e-----cCcceeeeecccc---ccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhh
Q 007053 359 --V-----KGPELLTMWFGES---EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 424 (620)
Q Consensus 359 --i-----~~~~l~~~~~g~s---e~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ 424 (620)
+ +..+++ ..-+.+ -..++++-+.+ ......|+||||+|.|.. ...+.||..
T Consensus 79 ~~~~~g~~~~~dv~-eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------------~a~NaLLK~ 143 (824)
T PRK07764 79 VALAPGGPGSLDVT-EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------------QGFNALLKI 143 (824)
T ss_pred HHHHcCCCCCCcEE-EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------------HHHHHHHHH
Confidence 0 001111 011111 12334433222 234457999999999853 346778888
Q ss_pred hcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhcCCCCCCc
Q 007053 425 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGFSGAD 503 (620)
Q Consensus 425 ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t~G~sg~D 503 (620)
|+.... .+++|++|+.++.|.+.|++ |+. ++.|..++.++...+|+..++...+..+. .+..|++.+.| +.++
T Consensus 144 LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~ 217 (824)
T PRK07764 144 VEEPPE--HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRD 217 (824)
T ss_pred HhCCCC--CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 886543 45666667778888888887 774 89999999999999999988665543222 24556666654 4455
Q ss_pred HHHHHHHHH
Q 007053 504 ITEICQRAC 512 (620)
Q Consensus 504 L~~l~~~A~ 512 (620)
+.+++++.+
T Consensus 218 Al~eLEKLi 226 (824)
T PRK07764 218 SLSVLDQLL 226 (824)
T ss_pred HHHHHHHHH
Confidence 555555443
No 89
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.42 E-value=1.4e-12 Score=141.04 Aligned_cols=222 Identities=22% Similarity=0.315 Sum_probs=139.0
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhh-hh---cCC-CCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee-eee
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKF-EK---FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 368 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~-~~---~g~-~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-~~~ 368 (620)
.+.|++++++.+...+.......... .. .++ ....++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 37899999999877663211110000 00 011 1246899999999999999999999999999999988775 357
Q ss_pred cccc-ccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------Ccc
Q 007053 369 FGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK 432 (620)
Q Consensus 369 ~g~s-e~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~ 432 (620)
+|.. +..+...+..+ ....++||||||+|.+.+++...+.........+.+.||..|++.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 33344444432 2345789999999999876433211111112357788888887542 123
Q ss_pred eEEEEccCCCC---------------------------C-----------------------CCcccccCCCCCCceeee
Q 007053 433 TVFIIGATNRP---------------------------D-----------------------IIDPALLRPGRLDQLIYI 462 (620)
Q Consensus 433 ~viVIatTn~~---------------------------~-----------------------~Ld~al~rpgRf~~~i~~ 462 (620)
+.++|.|+|-. + -+.|+|+ ||++.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 56777787751 0 0224444 599999999
Q ss_pred eCCChhHHHHHHHHh----hccC-------CCC---CCcChHHHHhhc--CCCCCCcHHHHHHHHHHHHHHH
Q 007053 463 PLPDEESRLQIFKAC----LRKS-------PVS---KDVDLRALAKYT--QGFSGADITEICQRACKYAIRE 518 (620)
Q Consensus 463 ~~P~~~eR~~Il~~~----l~~~-------~l~---~dv~l~~LA~~t--~G~sg~DL~~l~~~A~~~A~~~ 518 (620)
.+.+.++..+|+... ++.. .+. .+.-++.||+.. ..+-.+-|+.++++..+..+-+
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999999998752 2211 111 112255677653 3444577777777766655544
No 90
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.42 E-value=6.3e-13 Score=133.07 Aligned_cols=188 Identities=16% Similarity=0.249 Sum_probs=115.4
Q ss_pred cccccc--cchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCccee
Q 007053 291 VNWEDI--GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL 365 (620)
Q Consensus 291 v~~~di--~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~ 365 (620)
.++++. ++.....+.+++++.. ..+.+++|+||+|||||++|+++++++. .+++++++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 345554 3566677777776531 2467899999999999999999998874 567888877664
Q ss_pred eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC
Q 007053 366 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 445 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~ 445 (620)
... ..++..... +.+|+|||+|.+.... .....+..++..+. ..+..+|++++..+..
T Consensus 79 ~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~---~~~~~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP---------EWQEALFHLYNRVR---EAGGRLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhccc--CCEEEEeChhhhcCCh---------HHHHHHHHHHHHHH---HcCCeEEEECCCChHH
Confidence 221 233333222 3599999999875211 00122223333222 2223455545444443
Q ss_pred Cc---ccccCCCCC--CceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHH
Q 007053 446 ID---PALLRPGRL--DQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 516 (620)
Q Consensus 446 Ld---~al~rpgRf--~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~ 516 (620)
++ +.+.+ |+ ...+.+++|+.+++..+++.+.....+. .+.-+..|+.. .+-+.+++.++++++...+.
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASL 210 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHH
Confidence 32 55665 55 4789999999999999999877544332 22235666664 34456777777776554433
No 91
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=9.7e-13 Score=144.77 Aligned_cols=170 Identities=18% Similarity=0.304 Sum_probs=109.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcceeeeeccccc-cchHHHHHhhhccCCeeeeeccchhHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 402 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~l~~~~~g~se-~~i~~if~~A~~~~p~IL~iDEiD~l~~~ 402 (620)
.+++||||+|||||+|++++++++ +..++++++.+++..+..... ..+.. |.......+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 346788887776544432211 12222 33333345789999999988632
Q ss_pred cCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC---CcccccCCCCC--CceeeeeCCChhHHHHHHHHh
Q 007053 403 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEESRLQIFKAC 477 (620)
Q Consensus 403 r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~---Ld~al~rpgRf--~~~i~~~~P~~~eR~~Il~~~ 477 (620)
. .....|+..++.+...+..+|+++.+.|.. +.+.+.+ || ...+.+.+|+.+.|..|++..
T Consensus 210 ~------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 111223333333333344566666666665 4566776 66 468899999999999999998
Q ss_pred hccC--CCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 478 LRKS--PVSKDVDLRALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 478 l~~~--~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
+... .++.+ .+..||+...| +.++|..++.+....+
T Consensus 276 ~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 276 LEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 8643 33333 36777777764 4566666666554444
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.40 E-value=1.6e-12 Score=137.03 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=108.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 369 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~ 369 (620)
+.+++++.|.+.+++.++.++.. | ..++.+||+||||+|||++|++++++++.+++.+++.+ .. .
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 45789999999999999988763 1 23456777999999999999999999998999998876 11 1
Q ss_pred cccccchHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcc
Q 007053 370 GESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 448 (620)
Q Consensus 370 g~se~~i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~ 448 (620)
......+........ ...+.+|+|||+|.+... . ....|...++... .++.+|.+||.+..+.+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~---~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------D---AQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------H---HHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 111111222111111 134689999999987311 1 1233334444332 34567778898889999
Q ss_pred cccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 449 ALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 449 al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
++++ ||. .+.|+.|+.+++..+++.++
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9988 885 78999999999998877643
No 93
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.4e-12 Score=145.33 Aligned_cols=173 Identities=23% Similarity=0.354 Sum_probs=119.2
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 355 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------------- 355 (620)
.+.+|+++.|++.+++.|+.++... ..++.+|||||||||||++|+++|+.+.+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3568999999999999999887741 235567999999999999999999988541
Q ss_pred ----------eeeecCcceeeeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHH
Q 007053 356 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 421 (620)
Q Consensus 356 ----------~i~i~~~~l~~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~L 421 (620)
++.+++.. ...-..++++.+.+.. ..+.||||||+|.+. ...++.|
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naL 136 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNAL 136 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHH
Confidence 22222210 1112234555443322 345799999998763 2346778
Q ss_pred hhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCC
Q 007053 422 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQG 498 (620)
Q Consensus 422 L~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G 498 (620)
+..|+... ..+++|.+|+.+..+.+.+.+ |+. .+.|.+|+.++....++..++...+.- +..+..+++.+.|
T Consensus 137 Lk~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 137 LKTLEEPP--EHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHhCC--CCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88887543 345666677888889999887 775 899999999999999999886654432 2224555555543
No 94
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.6e-13 Score=158.81 Aligned_cols=248 Identities=22% Similarity=0.313 Sum_probs=160.0
Q ss_pred hhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccc
Q 007053 213 VRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN 292 (620)
Q Consensus 213 l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~ 292 (620)
+..||+.|.||+||||++||++||+.+++|.+|+++.+.+++..+. ..++|...||..|+.++.|+..|.......+++
T Consensus 463 ~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~-~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~ 541 (1080)
T KOG0732|consen 463 LLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDV-ALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLS 541 (1080)
T ss_pred HHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccc-hhhhhhhHhhhhhhhccCCCCCccccCCCCCCC
Confidence 4569999999999999999999999999999999999888776543 567799999999999999998886433322221
Q ss_pred ccc--ccchHHHHHHHHHhhcCcCCChh-------hhhhcC------CCCCceeeeecCCCChhHHHHHHHHhhh-hhce
Q 007053 293 WED--IGGLENVKRELQETVQYPVEHPE-------KFEKFG------MSPSKGVLFYGPPGCGKTLLAKAIANEC-QANF 356 (620)
Q Consensus 293 ~~d--i~Gl~~~k~~L~e~l~~pl~~~~-------~~~~~g------~~~~~~vLL~GppGtGKT~LAralA~~l-~~~~ 356 (620)
-.- +.+...+...++..+.....-.. .++.+. +-....+++.|..|.|-+.+..+|-+.+ +.++
T Consensus 542 ~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v 621 (1080)
T KOG0732|consen 542 TYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPV 621 (1080)
T ss_pred cceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccch
Confidence 000 11122333333322221110000 111111 1123458999999999999999999887 5677
Q ss_pred eeecCcceeeee-ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEE
Q 007053 357 ISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 435 (620)
Q Consensus 357 i~i~~~~l~~~~-~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~vi 435 (620)
.....+.++... ....+..+..+|.+|+...||||||-++|.|...... .++..|+..++.......+.
T Consensus 622 ~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~----------s~~~~~~~~l~~~~~~t~i~ 691 (1080)
T KOG0732|consen 622 QSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV----------SFLEEFLSSLDEKALSTPIL 691 (1080)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc----------hhhhcchhcchhhhhccchh
Confidence 666666666554 5667788999999999999999999999999855432 23444444444322222222
Q ss_pred EEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhc
Q 007053 436 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 436 VIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~ 479 (620)
.+-+-+.. +.. -=.....+..|..+.+...|+..++
T Consensus 692 e~~t~~~~------~~~--~~~~~~t~~~p~~~s~~~ff~r~I~ 727 (1080)
T KOG0732|consen 692 ELHTWDTS------FES--VNKSVVTLSKPSAESTGAFFKRLIR 727 (1080)
T ss_pred hhcccccc------ccc--cCccccccccchhhhhHHHHHHHHH
Confidence 22111110 000 0013455677788888777766553
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.3e-12 Score=144.13 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=132.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh---------------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 354 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~--------------- 354 (620)
+.+|+|+.|++.+.+.|+..+.. + ..++.+||+||+|+|||++|+.+|+.+.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 45899999999999999877664 1 24678999999999999999999987643
Q ss_pred ---------ceeeecCcceeeeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHH
Q 007053 355 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 421 (620)
Q Consensus 355 ---------~~i~i~~~~l~~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~L 421 (620)
.++.+++++ ...-..++.+.+.+.. ....|++|||+|.|.. ..++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------------SAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------HHHHHH
Confidence 123333321 0122346666665542 3346999999998752 246778
Q ss_pred hhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCC
Q 007053 422 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 500 (620)
Q Consensus 422 L~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~s 500 (620)
+..|+... ..+++|.+|+.++.+.+.+++ |+. .+.|..++.++....++..+....+. .+..+..|++.+.| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888644 345666667778889888887 774 78999999999999999888665443 22346677777754 5
Q ss_pred CCcHHHHHHHHHHH
Q 007053 501 GADITEICQRACKY 514 (620)
Q Consensus 501 g~DL~~l~~~A~~~ 514 (620)
.+++.+++..+..+
T Consensus 211 lR~alslLdqli~y 224 (491)
T PRK14964 211 MRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666777666543
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.6e-12 Score=146.92 Aligned_cols=194 Identities=20% Similarity=0.258 Sum_probs=133.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee----------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---------- 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~---------- 358 (620)
.+.+|++|.|.+.+++.|+.++.. -..++.+||+||+|||||++|+++|+.+.+.-..
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 356899999999999999988774 1246789999999999999999999987543100
Q ss_pred ---ecC---cceeee--eccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 359 ---VKG---PELLTM--WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 359 ---i~~---~~l~~~--~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
+.. .+++.- ........++++++.+.. ....||||||+|.|.. ...+.||..|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~--------------~A~NALLKtLE 144 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK--------------SAFNAMLKTLE 144 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH--------------HHHHHHHHHHH
Confidence 000 111100 001122346666665432 3346999999988642 34677888887
Q ss_pred CCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCCCCcHH
Q 007053 427 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADIT 505 (620)
Q Consensus 427 ~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~sg~DL~ 505 (620)
... ..+.+|.+|+.+..+.+.+++ || ..+.|+.++.++....|+..++...+.-+ ..+..|++.+. -+.+++.
T Consensus 145 EPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdAl 218 (709)
T PRK08691 145 EPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDAL 218 (709)
T ss_pred hCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHH
Confidence 543 345666677788888888876 87 47889999999999999998876654322 23667777775 4567777
Q ss_pred HHHHHHHHH
Q 007053 506 EICQRACKY 514 (620)
Q Consensus 506 ~l~~~A~~~ 514 (620)
+++..+...
T Consensus 219 nLLDqaia~ 227 (709)
T PRK08691 219 SLLDQAIAL 227 (709)
T ss_pred HHHHHHHHh
Confidence 777766654
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=2.5e-12 Score=145.44 Aligned_cols=193 Identities=19% Similarity=0.282 Sum_probs=128.8
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce------e------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------I------ 357 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~------i------ 357 (620)
+.+|+++.|.+.+++.|+.++..- ..++.+||+||+|||||++|+++|+.+.+.- .
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 458999999999999999887741 2356689999999999999999999886410 0
Q ss_pred ------ee---cCcceeeee--ccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHh
Q 007053 358 ------SV---KGPELLTMW--FGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 422 (620)
Q Consensus 358 ------~i---~~~~l~~~~--~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL 422 (620)
.+ +.++++.-. ....-..++++.+.+.. +...|+||||+|.|.. ...+.|+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~a~NaLL 145 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------TAFNAML 145 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------HHHHHHH
Confidence 00 001111100 00112245666655432 2246999999999853 2367788
Q ss_pred hhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCCC
Q 007053 423 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 501 (620)
Q Consensus 423 ~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~sg 501 (620)
..|+... ..+++|.+|+.+..+.+.+++ |+ ..++|..++.++....|+..+....+.-+ ..+..|++.+.| +.
T Consensus 146 KtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-sl 219 (618)
T PRK14951 146 KTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SM 219 (618)
T ss_pred HhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8887533 345566666777788888887 77 58999999999999999988866544322 236677777664 55
Q ss_pred CcHHHHHHHHHHH
Q 007053 502 ADITEICQRACKY 514 (620)
Q Consensus 502 ~DL~~l~~~A~~~ 514 (620)
+++.+++.++...
T Consensus 220 R~al~lLdq~ia~ 232 (618)
T PRK14951 220 RDALSLTDQAIAF 232 (618)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555443
No 98
>PLN03025 replication factor C subunit; Provisional
Probab=99.39 E-value=2.1e-12 Score=136.69 Aligned_cols=180 Identities=19% Similarity=0.217 Sum_probs=119.1
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh-----ceeeecCcce
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPEL 364 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~-----~~i~i~~~~l 364 (620)
+.+|+++.|.+++.+.|+.++.. ...+++|||||||||||++|+++|+++.. .++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 45789999999999999887653 11246999999999999999999998732 3556665543
Q ss_pred eeeeccccccchHHHHHh---hh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 365 LTMWFGESEANVREIFDK---AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~---A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
.+ -..+++.... .. ...+.|++|||+|.+... ..+.|+..|+.... ...+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcccC--CceEE
Confidence 21 1123333221 11 123579999999998632 23445555554332 23455
Q ss_pred ccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHH
Q 007053 438 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 511 (620)
Q Consensus 438 atTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A 511 (620)
.+||.+..+.+++++ |+ ..+.|++|+.++....++..++...+. .+..+..++..+ ++|+..+++..
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~----~gDlR~aln~L 201 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTA----DGDMRQALNNL 201 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHH
Confidence 577777788888987 77 489999999999999999888654432 122355666554 35666555443
No 99
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=3.9e-12 Score=127.07 Aligned_cols=167 Identities=25% Similarity=0.405 Sum_probs=123.3
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcc
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 363 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~ 363 (620)
....+.++++.|++.+++.|.+.....+.. .|..++||||++|||||++++++.+++ |+.+|.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 345789999999999999999887764432 367899999999999999999999877 56778777655
Q ss_pred eeeeeccccccchHHHHHhhhc-cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--CcceEEEEccC
Q 007053 364 LLTMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGAT 440 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--~~~~viVIatT 440 (620)
| ..+..++...+. ..+-|||+|++-- . ..+.-...|-..|+|.- ...+|+|.+|+
T Consensus 91 L---------~~l~~l~~~l~~~~~kFIlf~DDLsF---e----------~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 L---------GDLPELLDLLRDRPYKFILFCDDLSF---E----------EGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred h---------ccHHHHHHHHhcCCCCEEEEecCCCC---C----------CCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 5 245566666553 3467999998631 0 11223455666677643 34589999999
Q ss_pred CCCCCCcccccC---------------------CCCCCceeeeeCCChhHHHHHHHHhhccCCCC
Q 007053 441 NRPDIIDPALLR---------------------PGRLDQLIYIPLPDEESRLQIFKACLRKSPVS 484 (620)
Q Consensus 441 n~~~~Ld~al~r---------------------pgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~ 484 (620)
|+.+.+.+.+.. ..||...+.|.+|+.++-.+|++.++....+.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 988765432211 24899999999999999999999999766543
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=2.1e-12 Score=142.01 Aligned_cols=168 Identities=13% Similarity=0.231 Sum_probs=103.2
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 404 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~ 404 (620)
..+++||||+|+|||+|++++++++ +..++++++.++...+.......-...|..... .+.+|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999976 467788877665433322111111223443332 45699999999986321
Q ss_pred CCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC---CCcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhc
Q 007053 405 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 405 ~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~---~Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~ 479 (620)
. ....|+..++.+...+..+|++++..|. .+++.+.+ ||. ..+.+.+|+.++|..||+..+.
T Consensus 219 --------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 --------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred --------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 1 1122333322222223456665555554 46788887 884 7899999999999999999886
Q ss_pred cCCCCCC-cChHHHHhhcCCCCCCcHHHHHHHH
Q 007053 480 KSPVSKD-VDLRALAKYTQGFSGADITEICQRA 511 (620)
Q Consensus 480 ~~~l~~d-v~l~~LA~~t~G~sg~DL~~l~~~A 511 (620)
...+.-+ .-++.||....+ +.++|...+...
T Consensus 286 ~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 6543222 224556665542 234444444433
No 101
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.1e-12 Score=135.43 Aligned_cols=235 Identities=22% Similarity=0.328 Sum_probs=149.9
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-----eeeecCcce
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPEL 364 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~-----~i~i~~~~l 364 (620)
+.-.+.+.+.++.++++...+...+.. ..|.++++|||||||||.+++.+++++.-. +++|||..+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 334455888999999998886654432 345569999999999999999999998544 899999766
Q ss_pred eeee---------------ccccc-cchHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 365 LTMW---------------FGESE-ANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 365 ~~~~---------------~g~se-~~i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
-+.| .|.+. .....+++... .....||++||+|.|....+ .++..|+.....
T Consensus 84 ~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~ 152 (366)
T COG1474 84 RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGE 152 (366)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhccc
Confidence 4321 11111 11222222222 23457999999999985321 466777666554
Q ss_pred CCCcceEEEEccCCCCC---CCcccccCCCCC-CceeeeeCCChhHHHHHHHHhhccCCCC---CCcChHHHHhhcCCCC
Q 007053 428 MSAKKTVFIIGATNRPD---IIDPALLRPGRL-DQLIYIPLPDEESRLQIFKACLRKSPVS---KDVDLRALAKYTQGFS 500 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~---~Ld~al~rpgRf-~~~i~~~~P~~~eR~~Il~~~l~~~~l~---~dv~l~~LA~~t~G~s 500 (620)
. ..++.+|+.+|..+ .+|+.+.+ +| ...|.|++++.+|...|++...+..--. .+.-++.+|..+. ..
T Consensus 153 ~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a-~~ 227 (366)
T COG1474 153 N--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA-AE 227 (366)
T ss_pred c--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH-Hc
Confidence 4 55788899998764 68888877 44 3468999999999999999887543111 1222333443333 22
Q ss_pred CCcH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHH
Q 007053 501 GADI---TEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQA 574 (620)
Q Consensus 501 g~DL---~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~ 574 (620)
++|. -.+|+.|+..|.++. ...++.+|...|...+.+.+..+.+..+-.
T Consensus 228 ~GDAR~aidilr~A~eiAe~~~-------------------------~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~ 279 (366)
T COG1474 228 SGDARKAIDILRRAGEIAEREG-------------------------SRKVSEDHVREAQEEIERDVLEEVLKTLPL 279 (366)
T ss_pred CccHHHHHHHHHHHHHHHHhhC-------------------------CCCcCHHHHHHHHHHhhHHHHHHHHHcCCH
Confidence 2243 367888888877654 234566666666555555444444444433
No 102
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.38 E-value=1.5e-12 Score=139.39 Aligned_cols=176 Identities=26% Similarity=0.408 Sum_probs=124.9
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhc-CCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee-eecc-c
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 371 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~-g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~-~~~g-~ 371 (620)
-|.|++++++.+...+............+ .-.+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 37899999999977766432221111111 1224689999999999999999999999999999999988763 6777 4
Q ss_pred cccchHHHHHhhh-------------------------------------------------------------------
Q 007053 372 SEANVREIFDKAR------------------------------------------------------------------- 384 (620)
Q Consensus 372 se~~i~~if~~A~------------------------------------------------------------------- 384 (620)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5555555555440
Q ss_pred ------------------------------------------------------------------------ccCCeeee
Q 007053 385 ------------------------------------------------------------------------QSAPCVLF 392 (620)
Q Consensus 385 ------------------------------------------------------------------------~~~p~IL~ 392 (620)
.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------CcceEEEEccC----CCCCCCcccccCCCCCCcee
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRLDQLI 460 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~~~~viVIatT----n~~~~Ld~al~rpgRf~~~i 460 (620)
|||||.++.+..+...+ ....-+...||..++|.. ...++++|++. ..|..|-|.|. |||...+
T Consensus 253 iDEiDKIa~~~~~~~~D--vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGAD--VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCC--CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999765322122 122347788999998742 23467888775 34556667776 5999999
Q ss_pred eeeCCChhHHHHHH
Q 007053 461 YIPLPDEESRLQIF 474 (620)
Q Consensus 461 ~~~~P~~~eR~~Il 474 (620)
.+..++.++...||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.5e-12 Score=143.78 Aligned_cols=192 Identities=21% Similarity=0.262 Sum_probs=126.9
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-------------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 356 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~------------- 356 (620)
+.+|++|.|.+.+++.|+.++.. + ..++.+||+||+|||||++|+++|+.+.+.-
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 45899999999999999988874 1 2355689999999999999999999876421
Q ss_pred eeec-----Ccceeeeecccc---ccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhh
Q 007053 357 ISVK-----GPELLTMWFGES---EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 424 (620)
Q Consensus 357 i~i~-----~~~l~~~~~g~s---e~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ 424 (620)
..+. ..+++. .-+.+ -..++++.+.+. .....|+||||+|.|.. ...+.||..
T Consensus 77 ~~i~~~~~~~~dvie-idaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------------~A~NALLK~ 141 (584)
T PRK14952 77 VALAPNGPGSIDVVE-LDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------------AGFNALLKI 141 (584)
T ss_pred HHhhcccCCCceEEE-eccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------------HHHHHHHHH
Confidence 0000 011110 01111 123444433332 23346999999998752 256778888
Q ss_pred hcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCCCCc
Q 007053 425 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGAD 503 (620)
Q Consensus 425 ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~sg~D 503 (620)
|+... ..+++|.+|+.++.|.+.+++ |+ ..++|..++.++..+.++.+++...+.-+ ..+..++..+. -+.++
T Consensus 142 LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-GdlR~ 215 (584)
T PRK14952 142 VEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSPRD 215 (584)
T ss_pred HhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHH
Confidence 88543 356666677778899999987 76 48999999999999999988876554322 22445555443 34556
Q ss_pred HHHHHHHHHHH
Q 007053 504 ITEICQRACKY 514 (620)
Q Consensus 504 L~~l~~~A~~~ 514 (620)
+.+++..+...
T Consensus 216 aln~Ldql~~~ 226 (584)
T PRK14952 216 TLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHhc
Confidence 66666655443
No 104
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.38 E-value=1.1e-12 Score=153.21 Aligned_cols=234 Identities=22% Similarity=0.339 Sum_probs=146.8
Q ss_pred hccChHHHHHhhccCC--cc-cc----ccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCC----CCce
Q 007053 262 MAVTDEHFKTALGTSN--PS-AL----RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKG 330 (620)
Q Consensus 262 ~~v~~~df~~al~~~~--ps-~~----r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~----~~~~ 330 (620)
..|+.+|+..++.... |. .+ .+........-...|.|++.+++.+.+.+.+. +.|+. |...
T Consensus 415 ~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~ 486 (731)
T TIGR02639 415 ANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGS 486 (731)
T ss_pred cccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCcee
Confidence 4578888888776542 11 00 00011112222345667777777776666531 22332 3345
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee-----ecccccc-----chHHHHHhhhccCCeeeeeccchhHH
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-----WFGESEA-----NVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~-----~~g~se~-----~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
+||+||+|||||++|+++|+.++.+++.++++++... .+|.... ....+.+..+....+||||||+|.+.
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~ 566 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH 566 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC
Confidence 8999999999999999999999999999998876431 2222211 11233344455666899999999864
Q ss_pred hhcCCCCCCCCCchhHHHHHHhhhhcCCC---------CcceEEEEccCCCCC-------------------------CC
Q 007053 401 TQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD-------------------------II 446 (620)
Q Consensus 401 ~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~~~~viVIatTn~~~-------------------------~L 446 (620)
+ .+.+.|+..|+... ...+.++|+|||... .+
T Consensus 567 ~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f 632 (731)
T TIGR02639 567 P--------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLF 632 (731)
T ss_pred H--------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhc
Confidence 3 35667777776431 124678888887632 14
Q ss_pred cccccCCCCCCceeeeeCCChhHHHHHHHHhhccC-------C--CC-CCcChHHHHhh--cCCCCCCcHHHHHHHHHHH
Q 007053 447 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS-------P--VS-KDVDLRALAKY--TQGFSGADITEICQRACKY 514 (620)
Q Consensus 447 d~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~-------~--l~-~dv~l~~LA~~--t~G~sg~DL~~l~~~A~~~ 514 (620)
.|.++. |++.++.|.+.+.++..+|++..+... . +. .+..++.|++. ...+-.+.|+.++++....
T Consensus 633 ~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 633 SPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKK 710 (731)
T ss_pred ChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHH
Confidence 556654 999999999999999999999887532 1 11 11124556654 2345557777777776666
Q ss_pred HHHHH
Q 007053 515 AIREN 519 (620)
Q Consensus 515 A~~~~ 519 (620)
.+.+.
T Consensus 711 ~l~~~ 715 (731)
T TIGR02639 711 PLSDE 715 (731)
T ss_pred HHHHH
Confidence 66554
No 105
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=3.9e-12 Score=143.71 Aligned_cols=187 Identities=26% Similarity=0.350 Sum_probs=131.2
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 355 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------------- 355 (620)
.+.+|+++.|.+.+.+.|+..+.. -..++.+|||||+|||||++|+.+|+.+.+.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 356899999999999999988774 1235679999999999999999999987532
Q ss_pred -----------eeeecCcceeeeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHH
Q 007053 356 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 420 (620)
Q Consensus 356 -----------~i~i~~~~l~~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~ 420 (620)
++.+++.. +..-..++++...+.. ....|+||||+|.|.. ...+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------~a~na 138 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------GAFNA 138 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHH
Confidence 22222110 1122346666666542 3356999999998742 24677
Q ss_pred HhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCC
Q 007053 421 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGF 499 (620)
Q Consensus 421 LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~ 499 (620)
|+..++.. ...+++|.+|+.++.+.+.+++ |+. .+.|.+|+.++....++..++...+.-+ ..+..++..+.|
T Consensus 139 LLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888754 3345566566778899999987 875 7889999999999999998876554322 336667776665
Q ss_pred CCCcHHHHHHHHHH
Q 007053 500 SGADITEICQRACK 513 (620)
Q Consensus 500 sg~DL~~l~~~A~~ 513 (620)
+.++..+++..+..
T Consensus 213 ~~R~al~~Ldq~~~ 226 (559)
T PRK05563 213 GMRDALSILDQAIS 226 (559)
T ss_pred CHHHHHHHHHHHHH
Confidence 55666666665544
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=4.1e-12 Score=135.96 Aligned_cols=191 Identities=23% Similarity=0.317 Sum_probs=126.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee----e------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI----S------ 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i----~------ 358 (620)
.+.+|+++.|.+..++.|++.+.. | ..++.+|||||||+|||++|+++++.+...-. .
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 456899999999999999988763 1 23567999999999999999999988753200 0
Q ss_pred ------ecCcceeeeecc---ccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 359 ------VKGPELLTMWFG---ESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 359 ------i~~~~l~~~~~g---~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
-..+++. .+-+ .....++.++..+.. ....|++|||+|.+.. ...+.|+..+
T Consensus 77 c~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~~~Ll~~l 141 (355)
T TIGR02397 77 CKEINSGSSLDVI-EIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAFNALLKTL 141 (355)
T ss_pred HHHHhcCCCCCEE-EeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHHHHHHHHH
Confidence 0011111 0111 122245667766543 2346999999988742 2456778887
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcH
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADI 504 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL 504 (620)
+... ..+++|.+|+.++.+.+.+++ |+. .+.|++|+.++...+++.+++...+.- +..+..++..+.| +.+.+
T Consensus 142 e~~~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a 215 (355)
T TIGR02397 142 EEPP--EHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDA 215 (355)
T ss_pred hCCc--cceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHH
Confidence 6533 345666677878888888887 774 789999999999999999887655422 2235556666544 34444
Q ss_pred HHHHHHHH
Q 007053 505 TEICQRAC 512 (620)
Q Consensus 505 ~~l~~~A~ 512 (620)
.+.++.+.
T Consensus 216 ~~~lekl~ 223 (355)
T TIGR02397 216 LSLLDQLI 223 (355)
T ss_pred HHHHHHHH
Confidence 44444433
No 107
>PRK06893 DNA replication initiation factor; Validated
Probab=99.36 E-value=2.8e-12 Score=129.30 Aligned_cols=148 Identities=14% Similarity=0.203 Sum_probs=92.0
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCC
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 405 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~ 405 (620)
+.++||||||||||+|++++|+++. ....++..... ......+++... ...+|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 4589999999999999999999863 23333333211 111123333333 34699999999986321
Q ss_pred CCCCCCCchhHHHHHHhhhhcCCCCcc-eEEEEccCCCCCCCc---ccccCCCCCCceeeeeCCChhHHHHHHHHhhccC
Q 007053 406 SVGDAGGAADRVLNQLLTEMDGMSAKK-TVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 481 (620)
Q Consensus 406 ~~~~~~~~~~rvl~~LL~~ld~~~~~~-~viVIatTn~~~~Ld---~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~ 481 (620)
.... .|+..++.....+ .++|++++..|..++ +.+.++.++...+.+++|+.++|.+||+..+...
T Consensus 108 -------~~~~---~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWEL---AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHHH---HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 1112 2333333332233 345666666676554 7888744556899999999999999999877543
Q ss_pred CCC-CCcChHHHHhhcCC
Q 007053 482 PVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 482 ~l~-~dv~l~~LA~~t~G 498 (620)
.+. ++.-+..|+++..|
T Consensus 178 ~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR 195 (229)
T ss_pred CCCCCHHHHHHHHHhccC
Confidence 332 22236677776653
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=6.6e-12 Score=145.55 Aligned_cols=207 Identities=21% Similarity=0.297 Sum_probs=136.9
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee-----ee
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-----MW 368 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~-----~~ 368 (620)
..|.|++.+++.|.+.+......-. . ...|...+||+||||||||.+|+++|..++.+|+.++++++.. .+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~---~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLG---H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhcccc---C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHH
Confidence 3478999999999988874221000 0 0123457999999999999999999999999999999987642 23
Q ss_pred ccccccch-----HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------CcceE
Q 007053 369 FGESEANV-----REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTV 434 (620)
Q Consensus 369 ~g~se~~i-----~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~~~~v 434 (620)
+|.....+ ..+.+..+....+||||||||.+.+ .+.+.|+..|+... ...++
T Consensus 534 iG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 534 IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 33221111 1222333445568999999999753 35677777776321 12467
Q ss_pred EEEccCCCC-------------------------CCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC-------C
Q 007053 435 FIIGATNRP-------------------------DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS-------P 482 (620)
Q Consensus 435 iVIatTn~~-------------------------~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~-------~ 482 (620)
++|+|||.- ..+.|.++. |++.++.|++++.++..+|+..++... .
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 888999832 124566665 999999999999999999998776421 2
Q ss_pred CCCCc---ChHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHHH
Q 007053 483 VSKDV---DLRALAKYT--QGFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 483 l~~dv---~l~~LA~~t--~G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
+.-.+ -++.|++.. ..|-.+.|+.++++-....+.+.+
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 22112 244566433 234457788888777777666553
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.36 E-value=4.6e-12 Score=128.25 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=107.6
Q ss_pred ccccccccc--chHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh---ceeeecCcc
Q 007053 289 PNVNWEDIG--GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~--Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~---~~i~i~~~~ 363 (620)
+..+|++.. +...+...++.+... .....++||||||||||+|++++++++.. .+.++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 345566654 345566666655432 12357999999999999999999987753 233333322
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcce-EEEEccCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNR 442 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~-viVIatTn~ 442 (620)
... ...++++.... ..+|+|||++.+.... .....+ +..++.....++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---------~~~~~l---f~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---------LWEMAI---FDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---------HHHHHH---HHHHHHHHHcCCCeEEEeCCCC
Confidence 111 11122222222 2589999999986321 111222 222222222333 355666666
Q ss_pred CCC---CcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHH
Q 007053 443 PDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 443 ~~~---Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
|.. +.|.+++ |+. .++.+.+|+.++|.++++.......+. .+.-++.|+++..| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 655 5788887 774 799999999999999999866543322 22236677777753 34445444444
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2e-12 Score=145.06 Aligned_cols=191 Identities=22% Similarity=0.283 Sum_probs=126.7
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee-e-ecC------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI-S-VKG------ 361 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i-~-i~~------ 361 (620)
+.+|+++.|.+.+++.|..++.. -..++.+||+||||+|||++|+.+|+.+.+..- . -.|
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45899999999999999988764 123567899999999999999999998865210 0 000
Q ss_pred --------cceeee--eccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 362 --------PELLTM--WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 362 --------~~l~~~--~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
.+++.- .....-..++++.+.+.. +...|+||||+|.|.. ...+.||..|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------------~a~naLLK~LEe 145 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------------SAFNAMLKTLEE 145 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------------HHHHHHHHHHhC
Confidence 111100 001112346666665532 2346999999998752 246778888876
Q ss_pred CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCCCCcHHH
Q 007053 428 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~sg~DL~~ 506 (620)
.. ..+++|.+|+.+..+.+.+++ |+ ..++|..++.++....++..+....+..+ ..+..+++.+.| +.++..+
T Consensus 146 pp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~ 219 (527)
T PRK14969 146 PP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALS 219 (527)
T ss_pred CC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 43 345566666677788777876 77 58999999999999988888765444322 235566666653 4555556
Q ss_pred HHHHHH
Q 007053 507 ICQRAC 512 (620)
Q Consensus 507 l~~~A~ 512 (620)
++..+.
T Consensus 220 lldqai 225 (527)
T PRK14969 220 LLDQAI 225 (527)
T ss_pred HHHHHH
Confidence 665544
No 111
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.35 E-value=1.7e-12 Score=138.90 Aligned_cols=177 Identities=26% Similarity=0.417 Sum_probs=124.9
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCC-CCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee-eecc-c
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 371 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~-~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~-~~~g-~ 371 (620)
.|.|++++++.+..++........+...+.. ..++++||+||||||||++|++||..++.+|+.++++++.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3889999999998777532211111111110 13588999999999999999999999999999999988874 5777 3
Q ss_pred cccchHHHHHhhh-------------------------------------------------------------------
Q 007053 372 SEANVREIFDKAR------------------------------------------------------------------- 384 (620)
Q Consensus 372 se~~i~~if~~A~------------------------------------------------------------------- 384 (620)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3455555555550
Q ss_pred ---------------------------------------------------------------------c--cCCeeeee
Q 007053 385 ---------------------------------------------------------------------Q--SAPCVLFF 393 (620)
Q Consensus 385 ---------------------------------------------------------------------~--~~p~IL~i 393 (620)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred ccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------CcceEEEEccC----CCCCCCcccccCCCCCCceee
Q 007053 394 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRLDQLIY 461 (620)
Q Consensus 394 DEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~~~~viVIatT----n~~~~Ld~al~rpgRf~~~i~ 461 (620)
||||.|+.+.+....+ ....-+...||..++|.. ...++++||+. ..|..|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~~~D--vS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGPD--VSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCCC--CCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 9999999764332112 223347788999998742 23567888765 34566778886 59999999
Q ss_pred eeCCChhHHHHHHH
Q 007053 462 IPLPDEESRLQIFK 475 (620)
Q Consensus 462 ~~~P~~~eR~~Il~ 475 (620)
+..++.++...||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999883
No 112
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=2.1e-12 Score=144.67 Aligned_cols=172 Identities=15% Similarity=0.271 Sum_probs=111.8
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhc
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 403 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r 403 (620)
..++|||++|||||+|++++++++ +..++++++.+++..+...........|.+... .+.+|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999987 357788888877665543322222223443222 35799999999986432
Q ss_pred CCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC---CCcccccCCCCC--CceeeeeCCChhHHHHHHHHhh
Q 007053 404 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRL--DQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 404 ~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~---~Ld~al~rpgRf--~~~i~~~~P~~~eR~~Il~~~l 478 (620)
. ....|+..++.+...++.+||++...|. .+++.|.+ || ..++.+..|+.+.|..||+..+
T Consensus 394 ---------~---tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 ---------S---TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ---------H---HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 1 1123333333333333445554444443 46788887 76 6788999999999999999988
Q ss_pred ccCCCCCC-cChHHHHhhcCCCCCCcHHHHHHHHHHHHH
Q 007053 479 RKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAI 516 (620)
Q Consensus 479 ~~~~l~~d-v~l~~LA~~t~G~sg~DL~~l~~~A~~~A~ 516 (620)
....+.-+ .-++.|+.+..+ +.++|..++.+....+.
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 65544322 236677777653 46677777766554443
No 113
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.35 E-value=5.3e-12 Score=144.14 Aligned_cols=225 Identities=25% Similarity=0.357 Sum_probs=132.3
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhcee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFI 357 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i 357 (620)
..+.+|+++.|.+...+.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 3466899999999998888766543 124579999999999999999998765 34688
Q ss_pred eecCcceee-------eeccccccc----hHHHHHh----------hhccCCeeeeeccchhHHhhcCCCCCCCCCchhH
Q 007053 358 SVKGPELLT-------MWFGESEAN----VREIFDK----------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADR 416 (620)
Q Consensus 358 ~i~~~~l~~-------~~~g~se~~----i~~if~~----------A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~r 416 (620)
.++|..+-. .+++..... .+..+.. .......+|||||++.|....
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~------------- 281 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL------------- 281 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH-------------
Confidence 898876521 111111000 0011110 001123599999998875432
Q ss_pred HHHHHhhhhcCC--------------------------CCcceEEEEc-cCCCCCCCcccccCCCCCCceeeeeCCChhH
Q 007053 417 VLNQLLTEMDGM--------------------------SAKKTVFIIG-ATNRPDIIDPALLRPGRLDQLIYIPLPDEES 469 (620)
Q Consensus 417 vl~~LL~~ld~~--------------------------~~~~~viVIa-tTn~~~~Ld~al~rpgRf~~~i~~~~P~~~e 469 (620)
...|+..|+.. .....+++|+ ||+.++.+++++++ ||. .++|++++.++
T Consensus 282 -Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 282 -QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred -HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 22222222210 0112345554 55678889999987 886 67899999999
Q ss_pred HHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhh
Q 007053 470 RLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEI 548 (620)
Q Consensus 470 R~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 548 (620)
+..|++.++....+. .+.-+..|+..+. .++...+++..+...+..+.... .+ ......|
T Consensus 358 i~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~--------~~---------~~~~~~I 418 (615)
T TIGR02903 358 IALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA--------GK---------ENDKVTI 418 (615)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh--------cc---------CCCCeeE
Confidence 999999988764322 1222344444432 34433344444443333322100 00 0113468
Q ss_pred hHHHHHHHHHHHh
Q 007053 549 KAVHFEESMKYAR 561 (620)
Q Consensus 549 t~~df~~Al~~~~ 561 (620)
+.+|++++++.-+
T Consensus 419 ~~edv~~~l~~~r 431 (615)
T TIGR02903 419 TQDDVYEVIQISR 431 (615)
T ss_pred CHHHHHHHhCCCc
Confidence 9999999987553
No 114
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3.9e-12 Score=142.16 Aligned_cols=191 Identities=20% Similarity=0.259 Sum_probs=123.4
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-------------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 356 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~------------- 356 (620)
+.+|+++.|.+.+++.|+..+... ..++.+||+||+|||||++|+.+|+.+.+..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 458999999999999998887641 2356689999999999999999999875410
Q ss_pred eeec---Ccceeeee--ccccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 357 ISVK---GPELLTMW--FGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 357 i~i~---~~~l~~~~--~g~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
..+. .+++..-. ....-..++.+.+.+. .+...|+||||+|.+.. ...+.||..|+.
T Consensus 80 ~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--------------~a~naLLK~LEe 145 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--------------QSFNALLKTLEE 145 (546)
T ss_pred HHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH--------------HHHHHHHHHHhc
Confidence 0000 01221100 0001123455554443 23456999999998752 256778888875
Q ss_pred CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHH
Q 007053 428 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~ 506 (620)
.. ..+++|.+|+.+..+.+.+++ |+ ..++|.+++.++....++..++...+.. +..+..++..+.| +.+++.+
T Consensus 146 pp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~aln 219 (546)
T PRK14957 146 PP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALS 219 (546)
T ss_pred CC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 43 345555556667788878877 77 5899999999999988888776654332 2235566666643 3444445
Q ss_pred HHHHHH
Q 007053 507 ICQRAC 512 (620)
Q Consensus 507 l~~~A~ 512 (620)
++..+.
T Consensus 220 lLek~i 225 (546)
T PRK14957 220 LLDQAI 225 (546)
T ss_pred HHHHHH
Confidence 554443
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.7e-11 Score=139.89 Aligned_cols=190 Identities=23% Similarity=0.335 Sum_probs=129.0
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeee---c---C-
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV---K---G- 361 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i---~---~- 361 (620)
.+.+|++|.|.+.+++.|+..+... ..++.+|||||+|+|||++|+++|+.+.+.--.. . |
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 4568999999999999999888741 2356789999999999999999999875521100 0 0
Q ss_pred ------cceeeeecc---ccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC
Q 007053 362 ------PELLTMWFG---ESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 428 (620)
Q Consensus 362 ------~~l~~~~~g---~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~ 428 (620)
.+++. .-+ .....++++.+.+.. +...|++|||+|.|.. ...+.||..|+..
T Consensus 81 ~~~~~~~Dvie-idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEEP 145 (725)
T PRK07133 81 ENVNNSLDIIE-MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEEP 145 (725)
T ss_pred HhhcCCCcEEE-EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhcC
Confidence 11110 001 112336676666543 3446999999998752 2467788888854
Q ss_pred CCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhcCCCCCCcHHHH
Q 007053 429 SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEI 507 (620)
Q Consensus 429 ~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t~G~sg~DL~~l 507 (620)
...+++|.+|+.++.|.+.+++ |+. .+.|.+|+.++....|+..+....+..+. .+..+|..+.| +.+++..+
T Consensus 146 --P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 146 --PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred --CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3356666677788899999987 885 89999999999999998877655443222 25566666653 33444455
Q ss_pred HHHH
Q 007053 508 CQRA 511 (620)
Q Consensus 508 ~~~A 511 (620)
+..+
T Consensus 220 Lekl 223 (725)
T PRK07133 220 AEQV 223 (725)
T ss_pred HHHH
Confidence 5444
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=5.8e-12 Score=126.60 Aligned_cols=179 Identities=13% Similarity=0.179 Sum_probs=106.5
Q ss_pred ccccccccc--chHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcc
Q 007053 289 PNVNWEDIG--GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~--Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~ 363 (620)
++.+|+++. +.......++++..+ .....+++|+||+|||||+||+++++++ +.+++++++.+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 345667643 445666666665542 2345689999999999999999999876 45777777765
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcce-EEEEccCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNR 442 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~-viVIatTn~ 442 (620)
+... +.. .....+|+|||+|.+... . ...|+..++....... +++++++..
T Consensus 81 ~~~~------------~~~--~~~~~~liiDdi~~l~~~-----------~---~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------FDF--DPEAELYAVDDVERLDDA-----------Q---QIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------Hhh--cccCCEEEEeChhhcCch-----------H---HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4211 111 223469999999986421 1 1223333333222333 344444433
Q ss_pred CC--CCcccccCCCCC--CceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHHHHHH
Q 007053 443 PD--IIDPALLRPGRL--DQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 443 ~~--~Ld~al~rpgRf--~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
+. .+.+.+.+ || ...+.+++|+.+++..+++.+.....+.- +.-+..|++... -+.+++..+++.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHH
Confidence 32 24455655 65 46899999999999999988765443321 223555666332 244555555554
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=5.8e-12 Score=135.80 Aligned_cols=190 Identities=19% Similarity=0.289 Sum_probs=123.1
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc----e
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE----L 364 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~----l 364 (620)
.+.+|+++.|.+.+++.++..+... ..++++|||||||+|||++|+++++.+........+.. +
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 3568999999999999999888641 23578999999999999999999998765322111110 0
Q ss_pred e--eeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEc
Q 007053 365 L--TMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 438 (620)
Q Consensus 365 ~--~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIa 438 (620)
. ..........++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++... ...++|.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~~--~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEPP--AHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCCC--CceEEEE
Confidence 0 00001112456666765542 2356999999998752 23566777776532 2344455
Q ss_pred cCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHH
Q 007053 439 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 439 tTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
+|+.+..+.+++.+ |+. .+.+++|+.++...++...+....+. .+..+..|+..+.| +.+.+.+.++.
T Consensus 144 ~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 144 ATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred EeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 56667788888877 664 78999999999999998877665542 23345666665543 33333333443
No 118
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=8.2e-12 Score=141.70 Aligned_cols=191 Identities=21% Similarity=0.296 Sum_probs=128.4
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-e----------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-I---------- 357 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-i---------- 357 (620)
.+.+|++|.|.+.+++.|+..+.. | ..++.+|||||+|+|||++|+++|+.+.+.- .
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 356899999999999999988764 1 2466789999999999999999999875421 0
Q ss_pred -----eecCcceeeeeccc---cccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 358 -----SVKGPELLTMWFGE---SEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 358 -----~i~~~~l~~~~~g~---se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
.-+..+++ .+-+. .-..++++.+.+.. ....|+||||+|.|.. ...+.|+..|
T Consensus 79 c~~i~~g~~~d~~-eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------~a~naLLk~L 143 (576)
T PRK14965 79 CVEITEGRSVDVF-EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------NAFNALLKTL 143 (576)
T ss_pred HHHHhcCCCCCee-eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------HHHHHHHHHH
Confidence 00011111 01111 12345666555432 2336999999998752 2467788888
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcH
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADI 504 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL 504 (620)
+.. ...+++|.+|+.++.|.+.+++ |+. .+.|..++.++....++..++...+. .+..+..++..+.| +.+++
T Consensus 144 Eep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~a 217 (576)
T PRK14965 144 EEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDS 217 (576)
T ss_pred HcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 754 3356666777888899999987 774 88999999999998888887665443 22335667766664 34555
Q ss_pred HHHHHHHH
Q 007053 505 TEICQRAC 512 (620)
Q Consensus 505 ~~l~~~A~ 512 (620)
.+++..+.
T Consensus 218 l~~Ldqli 225 (576)
T PRK14965 218 LSTLDQVL 225 (576)
T ss_pred HHHHHHHH
Confidence 55554443
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.7e-12 Score=142.43 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=117.8
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee-------e---
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI-------S--- 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i-------~--- 358 (620)
.+.+|++|.|.+.+++.|+.++.. + .-+..+||+||+|||||++|+.+|+.+.+..- .
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 456899999999999999988864 1 22567999999999999999999998865210 0
Q ss_pred ------ecCcceeeeeccc---cccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 359 ------VKGPELLTMWFGE---SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 359 ------i~~~~l~~~~~g~---se~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
-+.++++. ..+. .-..++.+.+.+ ......||||||+|.|.. ..++.|+..|
T Consensus 79 C~~i~~g~hpDv~e-Id~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------------~a~naLLk~L 143 (624)
T PRK14959 79 CRKVTQGMHVDVVE-IDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------------EAFNALLKTL 143 (624)
T ss_pred HHHHhcCCCCceEE-EecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH--------------HHHHHHHHHh
Confidence 00011110 0011 112233332222 123456999999999852 2467788888
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCC
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G 498 (620)
+.. ...+++|.+|+.+..+.+.+++ |+. .+.|+.++.++...+|+..+....+. .+..+..|++.+.|
T Consensus 144 EEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 144 EEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred hcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 753 2356677777778888888877 875 78999999999999998877655432 22235566665553
No 120
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.7e-12 Score=141.80 Aligned_cols=188 Identities=22% Similarity=0.268 Sum_probs=124.0
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-eeee----c----
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISV----K---- 360 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~-~i~i----~---- 360 (620)
+.+|+++.|.+.+++.|...+.. + ..++.+||+||+|+|||++|+++|+.+.+. .... .
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45799999999999999988753 1 235779999999999999999999987431 0000 0
Q ss_pred -------Ccceeeeecc---ccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 361 -------GPELLTMWFG---ESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 361 -------~~~l~~~~~g---~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
.+++..- -+ ..-..++.+...+.. ....|++|||+|.|.. ...+.|+..|+
T Consensus 80 r~i~~~~h~DiieI-daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLLKtLE 144 (605)
T PRK05896 80 ESINTNQSVDIVEL-DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALLKTLE 144 (605)
T ss_pred HHHHcCCCCceEEe-ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHHHHHH
Confidence 0122110 01 112235666554443 2235999999998742 23567888887
Q ss_pred CCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHH
Q 007053 427 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADIT 505 (620)
Q Consensus 427 ~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~ 505 (620)
... ..+++|.+|+.+..|.+.+++ |+. .+.|++|+.++....++..+....+. .+..+..++..+.| +.+++.
T Consensus 145 EPp--~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~Al 218 (605)
T PRK05896 145 EPP--KHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGL 218 (605)
T ss_pred hCC--CcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 543 345666677778899999987 875 79999999999999999887654432 12235566666654 344444
Q ss_pred HHHHH
Q 007053 506 EICQR 510 (620)
Q Consensus 506 ~l~~~ 510 (620)
++++.
T Consensus 219 nlLek 223 (605)
T PRK05896 219 SILDQ 223 (605)
T ss_pred HHHHH
Confidence 44444
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.31 E-value=3.7e-12 Score=127.58 Aligned_cols=195 Identities=21% Similarity=0.343 Sum_probs=114.0
Q ss_pred ccccccccc-c--hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeec
Q 007053 289 PNVNWEDIG-G--LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVK 360 (620)
Q Consensus 289 p~v~~~di~-G--l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~ 360 (620)
|+.+|+... | .+.+...++.....+- .....++||||+|+|||+|.+|++++. +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 456777763 3 3444444444444311 123459999999999999999999876 34677887
Q ss_pred Ccceeeeeccccc-cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEcc
Q 007053 361 GPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 439 (620)
Q Consensus 361 ~~~l~~~~~g~se-~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIat 439 (620)
+.++...+..... ..+.++....+ ...+|+||+++.+..+ ......|+..++.....++.+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~------------~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK------------QRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH------------HHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc------------hHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 7776544432221 22233333323 3369999999998633 2234455555554444556677777
Q ss_pred CCCCCC---CcccccCCCCC--CceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhcCCCCCCcHHHHHHHH
Q 007053 440 TNRPDI---IDPALLRPGRL--DQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQRA 511 (620)
Q Consensus 440 Tn~~~~---Ld~al~rpgRf--~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t~G~sg~DL~~l~~~A 511 (620)
...|.. +++.+.+ || ...+.+.+|+.+.|..|++..+....+.-+. -++.|++... -+.++|..++.+.
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 666665 4566666 65 4589999999999999999988665543222 2556676654 2445555555443
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=8.6e-12 Score=138.52 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=123.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 355 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------------- 355 (620)
.+.+|+++.|++.+.+.|+..+.. -..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 455899999999999999988864 1235668999999999999999999987531
Q ss_pred eeeecC---cceeeeecccc---ccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 356 FISVKG---PELLTMWFGES---EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 356 ~i~i~~---~~l~~~~~g~s---e~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
+..+.. +++..- -+.+ -..++.+.+.+. .+.+.|++|||+|.+.. ...+.|+..+
T Consensus 79 c~~i~~g~~~d~~ei-daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naLLk~L 143 (486)
T PRK14953 79 CVEIDKGSFPDLIEI-DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNALLKTL 143 (486)
T ss_pred HHHHhcCCCCcEEEE-eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHHHHHH
Confidence 001111 112100 0111 122455544433 23457999999998742 2356777777
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCCCCcH
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADI 504 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~sg~DL 504 (620)
+... ..+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++.+++...+.-+ ..+..|+..+.| +.+++
T Consensus 144 Eepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~a 217 (486)
T PRK14953 144 EEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDA 217 (486)
T ss_pred hcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 7543 234455556667788888887 775 7999999999999999998876554322 235566666553 34444
Q ss_pred HHHHHHHH
Q 007053 505 TEICQRAC 512 (620)
Q Consensus 505 ~~l~~~A~ 512 (620)
.++++.+.
T Consensus 218 l~~Ldkl~ 225 (486)
T PRK14953 218 ASLLDQAS 225 (486)
T ss_pred HHHHHHHH
Confidence 45554443
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.30 E-value=1e-11 Score=126.15 Aligned_cols=178 Identities=24% Similarity=0.309 Sum_probs=120.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh------ceeeecCc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGP 362 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~------~~i~i~~~ 362 (620)
.+-+++++.|.+.+.+.|+..+.. ....++|||||||||||+.|+++|+++.. .+...+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 455789999999999999988774 23467999999999999999999999865 23444555
Q ss_pred ceeeeecc-ccccchHHHHHhhh-----ccCC-eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEE
Q 007053 363 ELLTMWFG-ESEANVREIFDKAR-----QSAP-CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 435 (620)
Q Consensus 363 ~l~~~~~g-~se~~i~~if~~A~-----~~~p-~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~vi 435 (620)
+-.+..+. +.-+...++-.... ..+| .||+|||.|.|... ..+.|...|+... ..++
T Consensus 98 derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLrr~mE~~s--~~tr 161 (346)
T KOG0989|consen 98 DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALRRTMEDFS--RTTR 161 (346)
T ss_pred ccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHHHHHhccc--cceE
Confidence 44333211 11111111111110 1112 69999999998732 4566777777643 3466
Q ss_pred EEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcC-hHHHHhhcCC
Q 007053 436 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQG 498 (620)
Q Consensus 436 VIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~-l~~LA~~t~G 498 (620)
+|..||..+.|...+.+ |+. .+.|+....+.....|+.+.....+.-+.+ +..+++.++|
T Consensus 162 FiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred EEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 67788999999888887 886 677888888888888888887666543332 4556665544
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=9.3e-12 Score=140.35 Aligned_cols=188 Identities=20% Similarity=0.258 Sum_probs=124.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-------ee---
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------IS--- 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-------i~--- 358 (620)
.+.+|++|.|++.+++.|+..+.. + ..++.+|||||+|+|||++|+++|+.+.+.- -.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 456899999999999999988864 1 2356799999999999999999999886420 00
Q ss_pred ---e-c--Ccceeeeecccc---ccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 359 ---V-K--GPELLTMWFGES---EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 359 ---i-~--~~~l~~~~~g~s---e~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
+ + ..++. ..-|.+ -..++++.+.+. .....|++|||+|.|.. ..++.|+..+
T Consensus 79 C~~i~~~~~~dv~-~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~--------------~a~naLLK~L 143 (563)
T PRK06647 79 CKSIDNDNSLDVI-EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN--------------SAFNALLKTI 143 (563)
T ss_pred HHHHHcCCCCCeE-EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH--------------HHHHHHHHhh
Confidence 0 0 01111 111111 123444443322 23456999999998742 3567788888
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcH
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADI 504 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL 504 (620)
+.. ...+++|.+|+.+..|.+++++ |+. .+.|.+++.++..++++..++...+. .+..+..|+..+.| +.+++
T Consensus 144 Eep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~a 217 (563)
T PRK06647 144 EEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDA 217 (563)
T ss_pred ccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 753 3356666666777889899987 876 78999999999999998887554432 22235556666554 34444
Q ss_pred HHHHH
Q 007053 505 TEICQ 509 (620)
Q Consensus 505 ~~l~~ 509 (620)
.+++.
T Consensus 218 lslLd 222 (563)
T PRK06647 218 YTLFD 222 (563)
T ss_pred HHHHH
Confidence 44444
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.29 E-value=1.5e-11 Score=126.52 Aligned_cols=133 Identities=25% Similarity=0.338 Sum_probs=90.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc------eeeeeccccccch-HH-------------------HHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE------LLTMWFGESEANV-RE-------------------IFD 381 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~------l~~~~~g~se~~i-~~-------------------if~ 381 (620)
..++||+||||||||++|+++|+.++.+|+.++|.. +++.+.+.....+ .. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999987754 3333322211111 10 111
Q ss_pred hhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------------CcceEEEEccCCCCC---
Q 007053 382 KARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------------AKKTVFIIGATNRPD--- 444 (620)
Q Consensus 382 ~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------------~~~~viVIatTn~~~--- 444 (620)
.|.. ...+|+|||++.+.+. +.+.|+..|+.-. ...++.||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 1211 2359999999986532 3444455443210 123567899999763
Q ss_pred --CCcccccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 445 --IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 445 --~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
.+++++++ || ..++++.|+.++-.+|++.++
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888888 88 589999999999999999875
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1.8e-11 Score=135.01 Aligned_cols=177 Identities=21% Similarity=0.287 Sum_probs=117.7
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee---------eec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI---------SVK 360 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i---------~i~ 360 (620)
+.+|+||.|.+.+++.|+..+..- ..++.+|||||||+|||++|+++|+.+.+.-- ..+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 468999999999999999888641 23567999999999999999999998743200 000
Q ss_pred C--------cceeeeeccccc---cchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 361 G--------PELLTMWFGESE---ANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 361 ~--------~~l~~~~~g~se---~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
| .+++ .+.|... ..++.+.+.. ......|+||||+|.+.. ...+.|+..|
T Consensus 81 C~~i~~~~~~d~~-~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~LLk~l 145 (451)
T PRK06305 81 CKEISSGTSLDVL-EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNSLLKTL 145 (451)
T ss_pred HHHHhcCCCCceE-EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHHHHHHh
Confidence 0 0111 1111111 2233332222 124467999999998852 2457788888
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCC
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQG 498 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G 498 (620)
+... ..+++|.+|+.+..|.+.+++ |+. .++|+.++.++....++..++...+.- +..+..|+..+.|
T Consensus 146 Eep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 146 EEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred hcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7643 355666667777888899887 775 799999999999999888776544322 2235566666643
No 127
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=3e-11 Score=122.17 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=94.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCC
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 405 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~ 405 (620)
..++|+||+|||||+|++++++++ +...++++..++ ...+...++... ...+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998876 334445544332 223334444443 33599999999876321
Q ss_pred CCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCC---cccccCCCCC--CceeeeeCCChhHHHHHHHHhhcc
Q 007053 406 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 406 ~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~L---d~al~rpgRf--~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
... ..++..++.....+.-+|+++...|..+ ++.+.+ || ...+.+++|+.++|.+|++.++..
T Consensus 110 -------~~~---~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDE---VALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHH---HHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 111 2223333322222333455455566654 688887 75 568899999999999999987644
Q ss_pred CCCC-CCcChHHHHhhcCCCCCCcHHHH
Q 007053 481 SPVS-KDVDLRALAKYTQGFSGADITEI 507 (620)
Q Consensus 481 ~~l~-~dv~l~~LA~~t~G~sg~DL~~l 507 (620)
..+. ++..+..|++.+. +|+..+
T Consensus 178 ~~l~l~~e~~~~La~~~~----rd~r~~ 201 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGE----RELAGL 201 (233)
T ss_pred cCCCCCHHHHHHHHHhCC----CCHHHH
Confidence 3332 2223667777754 566555
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=3.2e-11 Score=134.26 Aligned_cols=193 Identities=23% Similarity=0.305 Sum_probs=129.5
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-ee------e---
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-IS------V--- 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-i~------i--- 359 (620)
+.+|+++.|.+.+++.|+..+.. | ..++.+|||||+|+|||++|+++|+.+.+.- .. +
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46899999999999999988763 1 2356689999999999999999999873210 00 0
Q ss_pred ------cCcceeeeecccc---ccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 360 ------KGPELLTMWFGES---EANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 360 ------~~~~l~~~~~g~s---e~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
..++++.. -+.+ -..++++...+.. +...|++|||+|.|. ....+.||..|+
T Consensus 78 ~~~~~~~h~dv~el-daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NALLK~LE 142 (535)
T PRK08451 78 QSALENRHIDIIEM-DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNALLKTLE 142 (535)
T ss_pred HHHhhcCCCeEEEe-ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHHHHHh
Confidence 00111100 0111 2345555544321 223599999998875 235677888888
Q ss_pred CCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHH
Q 007053 427 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADIT 505 (620)
Q Consensus 427 ~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~ 505 (620)
.... .+.+|.+|+.+..|.+++++ |+ ..++|.+++.++....++..++...+. .+..+..++..+.| +.+++.
T Consensus 143 Epp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~al 216 (535)
T PRK08451 143 EPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTL 216 (535)
T ss_pred hcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 6533 34455556667899999988 86 489999999999999998888665432 22346667776664 667777
Q ss_pred HHHHHHHHHH
Q 007053 506 EICQRACKYA 515 (620)
Q Consensus 506 ~l~~~A~~~A 515 (620)
+++..+...+
T Consensus 217 nlLdqai~~~ 226 (535)
T PRK08451 217 TLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHhc
Confidence 7777766554
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=99.27 E-value=3.2e-11 Score=122.10 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=99.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 404 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~ 404 (620)
...++||||+|||||+|++++++++ +..+++++..++... ...+.+..... .+|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 3679999999999999999999865 456777777665432 12233333322 489999999875321
Q ss_pred CCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC---CcccccCCCCC--CceeeeeCCChhHHHHHHHHhhc
Q 007053 405 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 405 ~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~---Ld~al~rpgRf--~~~i~~~~P~~~eR~~Il~~~l~ 479 (620)
.....|+..++.....+..++++++..|.. +.|.+++ || ...+.+.+|+.++|..+++..+.
T Consensus 114 -----------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 114 -----------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred -----------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 112335555544444556677777766643 3678877 77 46888999999999999996554
Q ss_pred cCCCC-CCcChHHHHhhcCCCCCCcHHHHHH
Q 007053 480 KSPVS-KDVDLRALAKYTQGFSGADITEICQ 509 (620)
Q Consensus 480 ~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~ 509 (620)
...+. ++.-++.|+++..+ +.+.+..+++
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 43221 12235566665542 3444444443
No 130
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.27 E-value=1.9e-11 Score=111.71 Aligned_cols=137 Identities=42% Similarity=0.653 Sum_probs=86.9
Q ss_pred chHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeecccccc
Q 007053 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEA 374 (620)
Q Consensus 298 Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~se~ 374 (620)
|.+...+.+...+.. ...++++|+||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 445556666555543 245689999999999999999999998 7888888887654432211111
Q ss_pred c---hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC----CcceEEEEccCCCCC--C
Q 007053 375 N---VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----AKKTVFIIGATNRPD--I 445 (620)
Q Consensus 375 ~---i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----~~~~viVIatTn~~~--~ 445 (620)
. ....+.......+.+|+|||++.+... ....++..+.... ...++.+|+++|... .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~ 134 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSRG--------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGD 134 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhhHH--------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCC
Confidence 1 112223344456789999999987321 1222333333222 135677888888766 5
Q ss_pred CcccccCCCCCCceeeee
Q 007053 446 IDPALLRPGRLDQLIYIP 463 (620)
Q Consensus 446 Ld~al~rpgRf~~~i~~~ 463 (620)
+++.+.. ||+..+.++
T Consensus 135 ~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 135 LDRALYD--RLDIRIVIP 150 (151)
T ss_pred cChhHHh--hhccEeecC
Confidence 6777766 888777665
No 131
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.27 E-value=3.8e-11 Score=126.33 Aligned_cols=178 Identities=22% Similarity=0.287 Sum_probs=114.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-----hceeeecCcce
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 364 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~~~l 364 (620)
+.+|+++.|.+.+++.|+.++... ..+++||+||||||||++++++++++. .+++.+++++.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 358999999999999999887631 123589999999999999999999873 23455544332
Q ss_pred eeeeccccccchHHHHH-hhhc-----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEc
Q 007053 365 LTMWFGESEANVREIFD-KARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 438 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~-~A~~-----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIa 438 (620)
. ....++..+. .+.. ..+.+|+|||+|.+... ..+.|+..++..... ..+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~le~~~~~--~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEMYSQN--TRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------------HHHHHHHHHhcCCCC--CeEEE
Confidence 1 0111222221 1111 23569999999987521 234455566554433 33444
Q ss_pred cCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHH
Q 007053 439 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQ 509 (620)
Q Consensus 439 tTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~ 509 (620)
++|.+..+.+++.+ |+. .++|++++.++...+++.+++...+. .+..+..++..+. +|+..+.+
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~----gd~r~~~~ 202 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSE----GDMRKAIN 202 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHH
Confidence 56666677777776 765 68999999999999999988665442 2223666666554 45554443
No 132
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.8e-11 Score=133.32 Aligned_cols=190 Identities=20% Similarity=0.257 Sum_probs=120.2
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-e---------e
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-I---------S 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-i---------~ 358 (620)
.+.+|++|.|.+.+++.|+.++.. | ..++.+|||||||+|||++|+++|+.+.+.- . .
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 456899999999999999888763 1 2466799999999999999999999886521 0 0
Q ss_pred ecC--------------cceeeeecccc---ccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHH
Q 007053 359 VKG--------------PELLTMWFGES---EANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRV 417 (620)
Q Consensus 359 i~~--------------~~l~~~~~g~s---e~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rv 417 (620)
-.| .++. .+-+.. -..++++.+.+.. ....|+||||+|.+.. ..
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------~~ 143 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------AA 143 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeE-eecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------HH
Confidence 000 1111 111111 2334554444421 2336999999998752 13
Q ss_pred HHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhc
Q 007053 418 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYT 496 (620)
Q Consensus 418 l~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t 496 (620)
.+.|+..++...+ ..++|.+|+.+..+.+.+.+ |+. .++|.+++.++....++..++..... .+..+..|+..+
T Consensus 144 ~~~LLk~LEep~~--~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhcCCC--CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4567777764433 34444455666788888876 664 78999999999988888877654432 222355666666
Q ss_pred CCCCCCcHHHHHHHH
Q 007053 497 QGFSGADITEICQRA 511 (620)
Q Consensus 497 ~G~sg~DL~~l~~~A 511 (620)
.| +.+.+.+.++.+
T Consensus 219 ~g-~lr~a~~~L~kl 232 (397)
T PRK14955 219 QG-SMRDAQSILDQV 232 (397)
T ss_pred CC-CHHHHHHHHHHH
Confidence 54 334444444443
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.25 E-value=4.1e-11 Score=132.00 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=143.2
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-------eee-c
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------ISV-K 360 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-------i~i-~ 360 (620)
.+..|+|+.|.+.+.+.|+..+..- .-.++.||+||.|||||++||.+|+.+++.- ..+ .
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3557999999999999999988741 2357899999999999999999999886531 000 0
Q ss_pred Ccceeee-e---------ccccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 361 GPELLTM-W---------FGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 361 ~~~l~~~-~---------~g~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
|-++... + ....-..+|++.+.+. .....|++|||+|.|.. ...+.||..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~--------------~afNALLKTLE 144 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK--------------QAFNALLKTLE 144 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH--------------HHHHHHhcccc
Confidence 1111100 0 0112234566666554 34457999999999863 36788999887
Q ss_pred CCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcC-hHHHHhhcCCCCCCcHH
Q 007053 427 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADIT 505 (620)
Q Consensus 427 ~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~-l~~LA~~t~G~sg~DL~ 505 (620)
. +..+|++|.+|..++.+++.+++ |+. .+.|...+.++....|..++.+..+..+.+ +..+|+..+| +.+|..
T Consensus 145 E--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 E--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred c--CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 4 34568888888889999999998 885 788999999999999999998777665544 5566666665 679999
Q ss_pred HHHHHHHHHH
Q 007053 506 EICQRACKYA 515 (620)
Q Consensus 506 ~l~~~A~~~A 515 (620)
.++.+|....
T Consensus 219 slLDq~i~~~ 228 (515)
T COG2812 219 SLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHcc
Confidence 9998887765
No 134
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=9.6e-12 Score=137.15 Aligned_cols=173 Identities=16% Similarity=0.265 Sum_probs=111.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcceeeeeccccc---cchHHHHHhhhccCCeeeeeccchhH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE---ANVREIFDKARQSAPCVLFFDELDSI 399 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~l~~~~~g~se---~~i~~if~~A~~~~p~IL~iDEiD~l 399 (620)
..+++|||++|+|||+|++++++++ +..++++++.++...+..... ..+..+.... ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999966 356788888777654432211 1222222222 23569999999987
Q ss_pred HhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC---CcccccCCCCC--CceeeeeCCChhHHHHHH
Q 007053 400 ATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRL--DQLIYIPLPDEESRLQIF 474 (620)
Q Consensus 400 ~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~---Ld~al~rpgRf--~~~i~~~~P~~~eR~~Il 474 (620)
..+. .....|+..++.....+..+|+++...|.. +++.+.+ || ...+.+.+|+.++|.+||
T Consensus 219 ~~k~------------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYKE------------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCCH------------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 5321 123334444433333344455555555543 5677777 76 478889999999999999
Q ss_pred HHhhccCCC---CCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 007053 475 KACLRKSPV---SKDVDLRALAKYTQGFSGADITEICQRACKYAIR 517 (620)
Q Consensus 475 ~~~l~~~~l---~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~ 517 (620)
+..++...+ -++.-+..||..+.| +.+.|..+|.++...+..
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 999876432 122235667777764 567777888777655554
No 135
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3.2e-11 Score=136.66 Aligned_cols=191 Identities=21% Similarity=0.238 Sum_probs=126.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeec--------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-------- 360 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~-------- 360 (620)
.+.+|+++.|.+.+++.|..++.. | ..++.+||+||+|+|||++|+++|+.+.+.....+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 345899999999999999988764 1 24678999999999999999999998865422111
Q ss_pred -------------Ccceeeeecc--ccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHH
Q 007053 361 -------------GPELLTMWFG--ESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 421 (620)
Q Consensus 361 -------------~~~l~~~~~g--~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~L 421 (620)
.++++..... ..-..++++.+.+.. ....|+||||+|.|.. ...+.|
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~naL 152 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNAL 152 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHHH
Confidence 0122110000 112346666665543 2346999999998752 246778
Q ss_pred hhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCC-cChHHHHhhcCCCC
Q 007053 422 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFS 500 (620)
Q Consensus 422 L~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~d-v~l~~LA~~t~G~s 500 (620)
+..|+.... .+++|.+|+.++.+.+.+++ |+. .+.|..|+.++....++..++...+.-+ ..+..|+..+.| +
T Consensus 153 LKtLEePp~--~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 153 LKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HHHHHhCCC--CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888875433 35555566777778888887 774 8999999999999999988866544322 234455555543 4
Q ss_pred CCcHHHHHHHH
Q 007053 501 GADITEICQRA 511 (620)
Q Consensus 501 g~DL~~l~~~A 511 (620)
.+++.+++..+
T Consensus 227 lr~al~~Ldkl 237 (598)
T PRK09111 227 VRDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 136
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.6e-10 Score=131.30 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=122.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee----------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---------- 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~---------- 358 (620)
.+.+|++|.|.+.+++.|+..+.. -.-++.+||+||+|||||++|+.+|+.+.+.-..
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 355899999999999999987763 1235679999999999999999999988662100
Q ss_pred ecC--------------cceeeeecccc---ccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHH
Q 007053 359 VKG--------------PELLTMWFGES---EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 417 (620)
Q Consensus 359 i~~--------------~~l~~~~~g~s---e~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rv 417 (620)
-.| .++ ..+-+.+ -..++++.+.+. .....|++|||+|.|.. ..
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------~a 143 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------AA 143 (620)
T ss_pred CCCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------------HH
Confidence 000 111 1111211 234555544442 23346999999998752 23
Q ss_pred HHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhc
Q 007053 418 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYT 496 (620)
Q Consensus 418 l~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t 496 (620)
.+.|+..|+.... ..++|.+|+.+..|.+.+++ |+ ..++|..++.++....++..++...+. .+..+..|+..+
T Consensus 144 ~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 144 FNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred HHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 5678888876443 34444455667888888887 66 489999999999888888877654432 233466677666
Q ss_pred CCCCCCcHHHHHHHH
Q 007053 497 QGFSGADITEICQRA 511 (620)
Q Consensus 497 ~G~sg~DL~~l~~~A 511 (620)
.| +.+++.+.++..
T Consensus 219 ~G-dlr~al~eLeKL 232 (620)
T PRK14954 219 QG-SMRDAQSILDQV 232 (620)
T ss_pred CC-CHHHHHHHHHHH
Confidence 54 333343444433
No 137
>PRK06620 hypothetical protein; Validated
Probab=99.23 E-value=5.4e-11 Score=118.73 Aligned_cols=172 Identities=19% Similarity=0.244 Sum_probs=102.6
Q ss_pred cccccccccc---hHHHHHHHHHhhcCcCCChhhhhhcCCCC-CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 289 PNVNWEDIGG---LENVKRELQETVQYPVEHPEKFEKFGMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 289 p~v~~~di~G---l~~~k~~L~e~l~~pl~~~~~~~~~g~~~-~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
+..+|+++.- ...+...++++... ++..+ .+.++||||||||||+|++++++..+..++. ....
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4556666532 34455555555431 12223 2679999999999999999999887653322 1000
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
....+. ...+|+|||||.+. .. .|...++.+...+..++|+++..|.
T Consensus 79 -----------~~~~~~-----~~d~lliDdi~~~~--------------~~---~lf~l~N~~~e~g~~ilits~~~p~ 125 (214)
T PRK06620 79 -----------NEEILE-----KYNAFIIEDIENWQ--------------EP---ALLHIFNIINEKQKYLLLTSSDKSR 125 (214)
T ss_pred -----------chhHHh-----cCCEEEEeccccch--------------HH---HHHHHHHHHHhcCCEEEEEcCCCcc
Confidence 011111 23599999999542 01 2333333333445567777776655
Q ss_pred C--CcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHH
Q 007053 445 I--IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQ 509 (620)
Q Consensus 445 ~--Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~ 509 (620)
. + +++++ |+. .++.+.+|+.+.+..+++..+....+. ++.-++.|+.+..| +.+.+..+++
T Consensus 126 ~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~ 191 (214)
T PRK06620 126 NFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILE 191 (214)
T ss_pred ccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHH
Confidence 4 5 77877 764 579999999999999999887644332 22236667766643 2333444333
No 138
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.22 E-value=1.1e-10 Score=123.62 Aligned_cols=161 Identities=21% Similarity=0.354 Sum_probs=101.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-------hh--ceeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QA--NFISV 359 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-------~~--~~i~i 359 (620)
....|.+|.|.+.+++.|.-.+.. ....++||+|+||||||++|+++++.+ ++ ++..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 356799999999999987754332 113579999999999999999999987 33 22222
Q ss_pred cC-cce--------ee---------------eecccc--ccch---HHHHHhh--hccCCeeeeeccchhHHhhcCCCCC
Q 007053 360 KG-PEL--------LT---------------MWFGES--EANV---REIFDKA--RQSAPCVLFFDELDSIATQRGSSVG 408 (620)
Q Consensus 360 ~~-~~l--------~~---------------~~~g~s--e~~i---~~if~~A--~~~~p~IL~iDEiD~l~~~r~~~~~ 408 (620)
.+ +++ .. ..+|.. +..+ ...|+.- ......+||+||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 11 111 00 011110 0000 0001100 011124999999999753
Q ss_pred CCCCchhHHHHHHhhhhcCCC-----------CcceEEEEccCCCCC-CCcccccCCCCCCceeeeeCCCh-hHHHHHHH
Q 007053 409 DAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-ESRLQIFK 475 (620)
Q Consensus 409 ~~~~~~~rvl~~LL~~ld~~~-----------~~~~viVIatTn~~~-~Ld~al~rpgRf~~~i~~~~P~~-~eR~~Il~ 475 (620)
.+++.|+..|+.-. ...++++++|+|..+ .++++++. ||...+.+++|.. ++|.+|++
T Consensus 143 -------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 143 -------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred -------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 34556666664321 123688899988655 58888888 9999999998877 99999998
Q ss_pred Hhh
Q 007053 476 ACL 478 (620)
Q Consensus 476 ~~l 478 (620)
...
T Consensus 214 ~~~ 216 (334)
T PRK13407 214 RRD 216 (334)
T ss_pred Hhh
Confidence 754
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=4.5e-11 Score=136.22 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=120.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeee----c---C
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV----K---G 361 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i----~---~ 361 (620)
.+..|+++.|.+.+++.|+.++..- ..++.+||+||+|+|||++|+++|+.+.+..... . |
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 4568999999999999999888741 1246799999999999999999999986531100 0 0
Q ss_pred -----------ccee--eeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhh
Q 007053 362 -----------PELL--TMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 424 (620)
Q Consensus 362 -----------~~l~--~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ 424 (620)
.+++ .......-..++++.+.+.. ....|+||||+|.|.. ...+.||..
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~--------------~a~naLLK~ 144 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST--------------AAFNALLKT 144 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH--------------HHHHHHHHH
Confidence 1111 11111223456777766643 2346999999998742 346778888
Q ss_pred hcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCC
Q 007053 425 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQG 498 (620)
Q Consensus 425 ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G 498 (620)
|+.. ...+++|++|+.++.+.+.+++ |+. .++|..++.++....++..+....+.- +..+..+++.+.|
T Consensus 145 LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 145 LEEP--PPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HhcC--CcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 8853 3346666667778888888887 774 788999988888888877765543321 1235566666654
No 140
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.21 E-value=2.5e-11 Score=126.88 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=97.1
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee--eccccccc----------hHHHHHhhhccCCeeeeec
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVLFFD 394 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~--~~g~se~~----------i~~if~~A~~~~p~IL~iD 394 (620)
..++|||.||||||||++++.+|..++.+++.|++...+.. ++|...-. ....+..|.. .+++|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 35789999999999999999999999999999988765543 34432111 1122333332 35789999
Q ss_pred cchhHHhhcCCCCCCCCCchhHHHHHHhhh-----h-c---CCCCcceEEEEccCCCCC------------CCcccccCC
Q 007053 395 ELDSIATQRGSSVGDAGGAADRVLNQLLTE-----M-D---GMSAKKTVFIIGATNRPD------------IIDPALLRP 453 (620)
Q Consensus 395 EiD~l~~~r~~~~~~~~~~~~rvl~~LL~~-----l-d---~~~~~~~viVIatTn~~~------------~Ld~al~rp 453 (620)
|+|...+. ....++.+|.. + + .+.....+.||||+|..+ .++++++.
T Consensus 142 Ein~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99986432 12233333331 1 1 122344688999999865 36788887
Q ss_pred CCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 454 GRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 454 gRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
||-..+.+++|+.++-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99878899999999999999876543
No 141
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=8e-11 Score=134.20 Aligned_cols=183 Identities=19% Similarity=0.310 Sum_probs=123.5
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc--------------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 355 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~-------------- 355 (620)
+.+|++|.|.+.+++.|+..+.. | ..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 34799999999999999988864 1 235679999999999999999999987532
Q ss_pred -----------eeeecCcceeeeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHH
Q 007053 356 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 420 (620)
Q Consensus 356 -----------~i~i~~~~l~~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~ 420 (620)
++.+++.+ ..+...++.+...+.. +...|++|||+|.|.. ...+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------AAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------HHHHH
Confidence 12222110 0112345666655432 2245999999998742 24677
Q ss_pred HhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhcCCC
Q 007053 421 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGF 499 (620)
Q Consensus 421 LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t~G~ 499 (620)
|+..|+.... ..++|.+|+.+..|-+.+++ |+. .+.|.+++.++....++..+....+.-+. .+..|+..+.|
T Consensus 141 LLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 141 FLKTLEEPPS--YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888886433 34455555566788888887 775 79999999999999998887665544322 35667766643
Q ss_pred CCCcHHHHHHH
Q 007053 500 SGADITEICQR 510 (620)
Q Consensus 500 sg~DL~~l~~~ 510 (620)
+.+++.+++..
T Consensus 215 dlr~al~~Lek 225 (614)
T PRK14971 215 GMRDALSIFDQ 225 (614)
T ss_pred CHHHHHHHHHH
Confidence 34444444433
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.19 E-value=1.3e-10 Score=137.25 Aligned_cols=199 Identities=20% Similarity=0.258 Sum_probs=128.6
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCC---CCc-eeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMS---PSK-GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 366 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~---~~~-~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~ 366 (620)
..|.|++.+.+.+.+.+.... .|+. .|. .+||+||+|||||.+|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 357788888888887776431 1221 233 48999999999999999999988 34788888876532
Q ss_pred ------------eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----
Q 007053 367 ------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 429 (620)
Q Consensus 367 ------------~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----- 429 (620)
.|+|..+.. .+.+..++.+.+||+|||||... ..+.+.|+..++...
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~--------------~~v~~~Llq~ld~g~l~d~~ 701 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH--------------PDVLELFYQVFDKGVMEDGE 701 (852)
T ss_pred hhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC--------------HHHHHHHHHHhhcceeecCC
Confidence 133332221 23344455677999999998643 335666777665431
Q ss_pred ----CcceEEEEccCCCCC-----------------------------CCcccccCCCCCCceeeeeCCChhHHHHHHHH
Q 007053 430 ----AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 430 ----~~~~viVIatTn~~~-----------------------------~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~ 476 (620)
...+.+||.|||... .+.|+|+. |++ +|.|.+++.++..+|+..
T Consensus 702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~ 778 (852)
T TIGR03345 702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRL 778 (852)
T ss_pred CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHH
Confidence 124678888988421 14455655 887 899999999999999988
Q ss_pred hhccC--------CCCCCc---ChHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHH
Q 007053 477 CLRKS--------PVSKDV---DLRALAKYTQG--FSGADITEICQRACKYAIREN 519 (620)
Q Consensus 477 ~l~~~--------~l~~dv---~l~~LA~~t~G--~sg~DL~~l~~~A~~~A~~~~ 519 (620)
.+... .+.-.+ -++.|++...+ |-.+.|..+++.-...++.+.
T Consensus 779 ~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 779 KLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 76432 111112 24556665533 335667777766666555554
No 143
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.17 E-value=8.4e-11 Score=126.15 Aligned_cols=174 Identities=21% Similarity=0.317 Sum_probs=119.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh-----hceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 402 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~ 402 (620)
...++||||.|+|||+|++|++++.. ..++++....++..++......-.+-|++-+ .-.+++||+++.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 46699999999999999999999873 3467777666655544443333334455555 3469999999999754
Q ss_pred cCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCC---cccccCCCCCC--ceeeeeCCChhHHHHHHHHh
Q 007053 403 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 477 (620)
Q Consensus 403 r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~L---d~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~ 477 (620)
. +...+|+..+..+...++.+|+++...|..+ .|.|++ ||. .++.+.+|+.+.|..||+..
T Consensus 191 ~------------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 E------------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred h------------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 2 2344555555555556666777776777654 477877 764 68889999999999999997
Q ss_pred hccCCCCCC-cChHHHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q 007053 478 LRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAIRE 518 (620)
Q Consensus 478 l~~~~l~~d-v~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~ 518 (620)
.....+.-+ .-+..+|.... -+.++|..++.+....+.-.
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~ 297 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFT 297 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhc
Confidence 755544322 23566776654 35677777776666665543
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.4e-10 Score=132.13 Aligned_cols=189 Identities=20% Similarity=0.261 Sum_probs=119.2
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee-----ec---
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-----VK--- 360 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~-----i~--- 360 (620)
.+.+|++|.|.+.+++.|+..+... ..++.+|||||+|+|||++|+++|+.+.+.... ++
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3558999999999999998877641 235668999999999999999999987542210 00
Q ss_pred ---------Ccceeeeec--cccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 361 ---------GPELLTMWF--GESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 361 ---------~~~l~~~~~--g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
..+++.... ...-..++++.+.+.. ....||||||+|.|.. ..++.|+..|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------~a~naLLk~L 144 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------------AAFNALLKTL 144 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------HHHHHHHHHH
Confidence 011111000 0111234444433322 3346999999998752 2466788888
Q ss_pred cCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcH
Q 007053 426 DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADI 504 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL 504 (620)
+.... ..++|.+++..+.+.+.+++ |+. .+.|..++..+...+++..+....+.- +..+..|+..+.| +.+++
T Consensus 145 Eepp~--~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~a 218 (585)
T PRK14950 145 EEPPP--HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDA 218 (585)
T ss_pred hcCCC--CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 76443 34555556667777788876 765 788999999999998888776544321 2225556655544 34444
Q ss_pred HHHHH
Q 007053 505 TEICQ 509 (620)
Q Consensus 505 ~~l~~ 509 (620)
.++++
T Consensus 219 l~~Le 223 (585)
T PRK14950 219 ENLLQ 223 (585)
T ss_pred HHHHH
Confidence 33333
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.15 E-value=3.9e-10 Score=133.79 Aligned_cols=204 Identities=22% Similarity=0.353 Sum_probs=134.3
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCC----CCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
...+.|.+.+.+.+.+.+.... .|+ .|...+||+||+|||||++|++||..+ +.+++.++++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 3568888888888888776421 121 234569999999999999999999987 4588999988764
Q ss_pred ee-----eccccccc-----hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC------
Q 007053 366 TM-----WFGESEAN-----VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------ 429 (620)
Q Consensus 366 ~~-----~~g~se~~-----i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~------ 429 (620)
.. .+|..... -..+....+....+|||||||+.+. ..+.+.|+..|+.-.
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~--------------~~v~~~Ll~~l~~g~l~d~~g 701 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH--------------PDVFNVLLQVLDDGRLTDGQG 701 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC--------------HHHHHHHHHHHhcCceecCCC
Confidence 32 12211110 1223333444555799999999764 335666777664321
Q ss_pred ---CcceEEEEccCCCCCC-------------------------CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC
Q 007053 430 ---AKKTVFIIGATNRPDI-------------------------IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 481 (620)
Q Consensus 430 ---~~~~viVIatTn~~~~-------------------------Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~ 481 (620)
...+.+||+|||.... +.|.|+. |++.++.|.+++.+...+|+...+...
T Consensus 702 ~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 702 RTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred eEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 1245778899987321 3345554 999999999999999999998776421
Q ss_pred -------CCCCCcC---hHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHHH
Q 007053 482 -------PVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 482 -------~l~~dv~---l~~LA~~t~--G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
.+.-.++ +..|++... .+..+.|+.++++.....+.+.+
T Consensus 780 ~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 780 RKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111222 455666532 45668899888888877776654
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.14 E-value=4e-10 Score=119.59 Aligned_cols=162 Identities=23% Similarity=0.378 Sum_probs=104.6
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh-------ceee-e
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFIS-V 359 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~-------~~i~-i 359 (620)
.+...|.+|.|+++.|..|.-.+..| ...++||.|++|||||++|++++..+.. +|.. -
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 45678999999999999998776652 2468999999999999999999877631 2220 0
Q ss_pred cCccee-----ee---------------e----ccccccc------hHHHHHhhh---------ccCCeeeeeccchhHH
Q 007053 360 KGPELL-----TM---------------W----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIA 400 (620)
Q Consensus 360 ~~~~l~-----~~---------------~----~g~se~~------i~~if~~A~---------~~~p~IL~iDEiD~l~ 400 (620)
+.+++. .. + .+.++.. +...|.... .....+||+||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 001100 00 0 0111111 111222111 1123599999999986
Q ss_pred hhcCCCCCCCCCchhHHHHHHhhhhcC---------CC--CcceEEEEccCCCCC-CCcccccCCCCCCceeeeeCCC-h
Q 007053 401 TQRGSSVGDAGGAADRVLNQLLTEMDG---------MS--AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-E 467 (620)
Q Consensus 401 ~~r~~~~~~~~~~~~rvl~~LL~~ld~---------~~--~~~~viVIatTn~~~-~Ld~al~rpgRf~~~i~~~~P~-~ 467 (620)
+. +.+.|+..|+. .. ...++++|+|.|..+ .+.+++.. ||...+.+..|+ .
T Consensus 158 ~~--------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 158 DH--------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred HH--------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 43 34445555532 11 123678888888655 58888888 999999999998 5
Q ss_pred hHHHHHHHHhh
Q 007053 468 ESRLQIFKACL 478 (620)
Q Consensus 468 ~eR~~Il~~~l 478 (620)
+.+.+|++...
T Consensus 222 ~~e~~il~~~~ 232 (350)
T CHL00081 222 ELRVKIVEQRT 232 (350)
T ss_pred HHHHHHHHhhh
Confidence 99999998864
No 147
>PHA02244 ATPase-like protein
Probab=99.12 E-value=7.1e-10 Score=117.36 Aligned_cols=124 Identities=23% Similarity=0.293 Sum_probs=78.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCc----ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 403 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~----~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r 403 (620)
..+|||+||||||||++|+++|+.++.+|+.++.. .+.. +..........-|-.|.. ...+|||||++.+.+..
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH
Confidence 45799999999999999999999999999988742 1111 111111111112223322 34699999999865321
Q ss_pred CCCCCCCCCchhHHHHHHhh-----hhcCC-CCcceEEEEccCCCC-----------CCCcccccCCCCCCceeeeeCCC
Q 007053 404 GSSVGDAGGAADRVLNQLLT-----EMDGM-SAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYIPLPD 466 (620)
Q Consensus 404 ~~~~~~~~~~~~rvl~~LL~-----~ld~~-~~~~~viVIatTn~~-----------~~Ld~al~rpgRf~~~i~~~~P~ 466 (620)
...++.++. ..++. ....++.+|+|+|.+ ..|+++++. ||- .++++.|+
T Consensus 197 -----------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~ 262 (383)
T PHA02244 197 -----------LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDE 262 (383)
T ss_pred -----------HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCc
Confidence 112222221 12111 123568899999973 467899988 995 79999998
Q ss_pred h
Q 007053 467 E 467 (620)
Q Consensus 467 ~ 467 (620)
.
T Consensus 263 ~ 263 (383)
T PHA02244 263 K 263 (383)
T ss_pred H
Confidence 4
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.11 E-value=5.8e-10 Score=131.94 Aligned_cols=200 Identities=23% Similarity=0.335 Sum_probs=129.9
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCC----CCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 366 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~ 366 (620)
..|.|++.+++.+...+.... .|+ .|...+||+||+|||||+||++||+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR--------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh--------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 457899999998888776421 122 233458999999999999999999987 35788888877642
Q ss_pred -----e-------eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----
Q 007053 367 -----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 429 (620)
Q Consensus 367 -----~-------~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----- 429 (620)
+ |+|..+ ...+.+..+..+.+||+|||+|.+. ..+.+.|+..|+...
T Consensus 581 ~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~--------------~~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAH--------------PDIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred cccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCC--------------HHHHHHHHHHhccCceecCC
Confidence 1 222222 1234455555666899999999864 346677777776421
Q ss_pred ----CcceEEEEccCCCCCC-------------------------------------CcccccCCCCCCceeeeeCCChh
Q 007053 430 ----AKKTVFIIGATNRPDI-------------------------------------IDPALLRPGRLDQLIYIPLPDEE 468 (620)
Q Consensus 430 ----~~~~viVIatTn~~~~-------------------------------------Ld~al~rpgRf~~~i~~~~P~~~ 468 (620)
...+.++|+|||.... +.|.|+. |+|.++.|.+.+.+
T Consensus 645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~ 722 (821)
T CHL00095 645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKN 722 (821)
T ss_pred CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHH
Confidence 1346888889885321 1234554 99999999999999
Q ss_pred HHHHHHHHhhccC-------CCCCCc---ChHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHH
Q 007053 469 SRLQIFKACLRKS-------PVSKDV---DLRALAKYT--QGFSGADITEICQRACKYAIREN 519 (620)
Q Consensus 469 eR~~Il~~~l~~~-------~l~~dv---~l~~LA~~t--~G~sg~DL~~l~~~A~~~A~~~~ 519 (620)
+..+|++..+... .+.-.+ -...|++.. ..|-.+.|..++++-....+.+.
T Consensus 723 ~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 723 DVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 9999998877532 111111 144566542 12334666666666655555544
No 149
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.10 E-value=6.5e-10 Score=117.91 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=98.4
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-------hhcee-------
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QANFI------- 357 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-------~~~~i------- 357 (620)
.|..|.|++.++..|.-.+..| ...++||.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999999998876554432 24679999999999999999999776 22221
Q ss_pred --eecCc-------------------ceee-----eeccccc--cc--------hHHHHHhhhccCCeeeeeccchhHHh
Q 007053 358 --SVKGP-------------------ELLT-----MWFGESE--AN--------VREIFDKARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 358 --~i~~~-------------------~l~~-----~~~g~se--~~--------i~~if~~A~~~~p~IL~iDEiD~l~~ 401 (620)
..+|. ++-. ..+|... .. -..++.+| ...+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~ 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLED 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCH
Confidence 00000 1000 1111110 00 01112222 235999999999753
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEEEEccCCCCC-CCcccccCCCCCCceeeeeCCCh-h
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-E 468 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~viVIatTn~~~-~Ld~al~rpgRf~~~i~~~~P~~-~ 468 (620)
.+.+.|+..|+.-. ...++++|+|+|..+ .+.++++. ||...+.++.|.. +
T Consensus 146 --------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 146 --------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred --------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 24455555553211 123578888888655 58889988 9999999999976 8
Q ss_pred HHHHHHHHhh
Q 007053 469 SRLQIFKACL 478 (620)
Q Consensus 469 eR~~Il~~~l 478 (620)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 8999998754
No 150
>PRK09087 hypothetical protein; Validated
Probab=99.10 E-value=3.9e-10 Score=113.47 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=87.7
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCC
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 408 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~ 408 (620)
+.++|+||+|||||||++++++..+..++.. .++. ..++..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~-----------~~~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIG-----------SDAANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcc-----------hHHHHhhhc---CeEEEECCCCCCC-------
Confidence 4599999999999999999998765553332 2221 112222222 3899999997631
Q ss_pred CCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC---CcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhccCCC
Q 007053 409 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPV 483 (620)
Q Consensus 409 ~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~---Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~~~~l 483 (620)
. . ..|+..++.....+..+||+++..|.. ..+.+++ ||. .++.+.+|+.+.|.++++.+++...+
T Consensus 102 ----~-~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 ----D-E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred ----C-H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 0 1 223444433334455677767655543 3577877 764 79999999999999999999866443
Q ss_pred C-CCcChHHHHhhcC
Q 007053 484 S-KDVDLRALAKYTQ 497 (620)
Q Consensus 484 ~-~dv~l~~LA~~t~ 497 (620)
. ++..++.|+++..
T Consensus 172 ~l~~ev~~~La~~~~ 186 (226)
T PRK09087 172 YVDPHVVYYLVSRME 186 (226)
T ss_pred CCCHHHHHHHHHHhh
Confidence 2 2233667777765
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.09 E-value=5.4e-10 Score=132.24 Aligned_cols=201 Identities=20% Similarity=0.343 Sum_probs=125.2
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCC----CCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
...+.|.+.+++.+...+.... .|+ .|...+||+||+|||||++|++||..+ +.+|+.++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 3457788888888887776421 122 122468999999999999999999877 4568888887764
Q ss_pred ee-----eccccccc----hHHHHHhh-hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC------
Q 007053 366 TM-----WFGESEAN----VREIFDKA-RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------ 429 (620)
Q Consensus 366 ~~-----~~g~se~~----i~~if~~A-~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~------ 429 (620)
.. .+|..... -...+..+ +....++|||||++.+.+ .+.+.|+..++...
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~--------------~v~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP--------------DVFNILLQVLDDGRLTDGQG 704 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH--------------HHHHHHHHHHhhCceecCCc
Confidence 22 12211110 01123333 334448999999987542 35566666664321
Q ss_pred ---CcceEEEEccCCCCC-------------------------CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC
Q 007053 430 ---AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 481 (620)
Q Consensus 430 ---~~~~viVIatTn~~~-------------------------~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~ 481 (620)
...+.+||+|||... .+.|+|+. |++.++.|.+++.+...+|++.++...
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 123567888988631 24466765 999999999999999999988877542
Q ss_pred -------CCCCCcC---hHHHHhhcCCCC----CCcHHHHHHHHHHHHHHHH
Q 007053 482 -------PVSKDVD---LRALAKYTQGFS----GADITEICQRACKYAIREN 519 (620)
Q Consensus 482 -------~l~~dv~---l~~LA~~t~G~s----g~DL~~l~~~A~~~A~~~~ 519 (620)
.+.-.++ +..|+. .||+ .+.|+.++++-....+.+.
T Consensus 783 ~~rl~~~gi~l~is~~al~~L~~--~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 783 YKRLEERGYEIHISDEALKLLSE--NGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred HHHHHhCCCcCcCCHHHHHHHHH--cCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 1221223 333443 2454 3567776666665555544
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.9e-10 Score=129.82 Aligned_cols=161 Identities=25% Similarity=0.419 Sum_probs=119.1
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCC----CCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcceee
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT 366 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~~ 366 (620)
..+.|++.+...+-+.+... +.|+. |...+||.||+|+|||-||++||..+. ..++.+++++++.
T Consensus 491 ~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 45789999888888777642 23432 445789999999999999999999985 7899999999863
Q ss_pred ------------eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----
Q 007053 367 ------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 429 (620)
Q Consensus 367 ------------~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----- 429 (620)
.|+|..+.. .+-+..++.+.|||+||||+. +...+++-||+.||...
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEK--------------AHpdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEK--------------AHPDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhh--------------cCHHHHHHHHHHhcCCeeecCC
Confidence 345444422 233444555669999999988 44568999999997542
Q ss_pred ----CcceEEEEccCCCCC----------------------------CCcccccCCCCCCceeeeeCCChhHHHHHHHHh
Q 007053 430 ----AKKTVFIIGATNRPD----------------------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 477 (620)
Q Consensus 430 ----~~~~viVIatTn~~~----------------------------~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~ 477 (620)
.-.+.+||+|||--. .+.|.++. |+|.+|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 124688999997321 13355554 99999999999999999999887
Q ss_pred hcc
Q 007053 478 LRK 480 (620)
Q Consensus 478 l~~ 480 (620)
+..
T Consensus 705 L~~ 707 (786)
T COG0542 705 LNR 707 (786)
T ss_pred HHH
Confidence 743
No 153
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.07 E-value=7.8e-10 Score=127.18 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=99.8
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-------------------
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 352 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l------------------- 352 (620)
.|.+|.|++.++..|.-....+ ...+|||+|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4788999999998876555432 12579999999999999999999887
Q ss_pred ----------------hhceeeecCcceeeeeccccc--cch--------HHHHHhhhccCCeeeeeccchhHHhhcCCC
Q 007053 353 ----------------QANFISVKGPELLTMWFGESE--ANV--------REIFDKARQSAPCVLFFDELDSIATQRGSS 406 (620)
Q Consensus 353 ----------------~~~~i~i~~~~l~~~~~g~se--~~i--------~~if~~A~~~~p~IL~iDEiD~l~~~r~~~ 406 (620)
..+|+.+.+.......+|... ..+ ...+..| ...+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~----- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDD----- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCH-----
Confidence 134444433322122222210 000 1111112 224999999999763
Q ss_pred CCCCCCchhHHHHHHhhhhcCCC-----------CcceEEEEccCCCC-CCCcccccCCCCCCceeeeeCCC-hhHHHHH
Q 007053 407 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPD-EESRLQI 473 (620)
Q Consensus 407 ~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~viVIatTn~~-~~Ld~al~rpgRf~~~i~~~~P~-~~eR~~I 473 (620)
.+++.|+..|+.-. ...++++|+|+|.. ..+.++|+. ||+..+.++.+. .+++.++
T Consensus 141 ---------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 141 ---------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ---------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 34566666664221 11358889998854 357788888 999888888774 5778888
Q ss_pred HHHhh
Q 007053 474 FKACL 478 (620)
Q Consensus 474 l~~~l 478 (620)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87644
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.07 E-value=8.3e-10 Score=117.40 Aligned_cols=135 Identities=28% Similarity=0.385 Sum_probs=89.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee--eeccccccch----HHHHHhhhc--cCC--eeeeeccch
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV----REIFDKARQ--SAP--CVLFFDELD 397 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~--~~~g~se~~i----~~if~~A~~--~~p--~IL~iDEiD 397 (620)
..++||.||||||||++|+++|..++.+|+.++|..-+. ...|...-.. ...|..... ... +++|+|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 578999999999999999999999999999999874431 1112111110 000111000 001 399999998
Q ss_pred hHHhhcCCCCCCCCCchhHHHHHHhhhhcC----------CCCcceEEEEccCC-----CCCCCcccccCCCCCCceeee
Q 007053 398 SIATQRGSSVGDAGGAADRVLNQLLTEMDG----------MSAKKTVFIIGATN-----RPDIIDPALLRPGRLDQLIYI 462 (620)
Q Consensus 398 ~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~----------~~~~~~viVIatTn-----~~~~Ld~al~rpgRf~~~i~~ 462 (620)
... ..+.+.|+..|+. ..-...++||+|+| ....|++++++ ||...+++
T Consensus 123 ra~--------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RAP--------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cCC--------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 854 3455666666654 22345788999999 44568899998 99889999
Q ss_pred eCC-ChhHHHHHHHHhh
Q 007053 463 PLP-DEESRLQIFKACL 478 (620)
Q Consensus 463 ~~P-~~~eR~~Il~~~l 478 (620)
++| ...+...++....
T Consensus 187 ~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 187 DYPDSEEEERIILARVG 203 (329)
T ss_pred CCCCchHHHHHHHHhCc
Confidence 999 5555555555443
No 155
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=1.1e-09 Score=121.86 Aligned_cols=167 Identities=25% Similarity=0.350 Sum_probs=111.4
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhh--------ccCCeeeeeccch
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR--------QSAPCVLFFDELD 397 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~--------~~~p~IL~iDEiD 397 (620)
++.+-+||+||||-||||||+.+|+.+|+.++.||+++-. +...+++....|. ...|.+|++||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 4456799999999999999999999999999999998743 2233333333332 2568999999998
Q ss_pred hHHhhcCCCCCCCCCchhHHHHHHhhhhc-------CCCCc------------ceEEEEccCCCCCCCcccccCCCCCCc
Q 007053 398 SIATQRGSSVGDAGGAADRVLNQLLTEMD-------GMSAK------------KTVFIIGATNRPDIIDPALLRPGRLDQ 458 (620)
Q Consensus 398 ~l~~~r~~~~~~~~~~~~rvl~~LL~~ld-------~~~~~------------~~viVIatTn~~~~Ld~al~rpgRf~~ 458 (620)
--. ...+..++..+. |-... -..-|||.||.. .-|+|+.---|..
T Consensus 398 Ga~--------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ 461 (877)
T KOG1969|consen 398 GAP--------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAE 461 (877)
T ss_pred CCc--------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceE
Confidence 522 223444444433 11110 124577888854 3566643113788
Q ss_pred eeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 007053 459 LIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 517 (620)
Q Consensus 459 ~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~ 517 (620)
+++|.+|...-..+-|+..+....+. ++...|+..++ ++-.||+..++.-...+..
T Consensus 462 ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 462 IIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred EEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 99999999998888888888666653 34445555544 4456888887776666654
No 156
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=6.1e-10 Score=119.01 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=115.7
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------eeee--
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISV-- 359 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~-------~i~i-- 359 (620)
.+..++++.|.+.+.+.|...+.. | ..++.+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 456789999999999999988874 1 235679999999999999999999987541 1000
Q ss_pred --c-----------Ccceee--eeccc------c---ccchHHHHHh----hhccCCeeeeeccchhHHhhcCCCCCCCC
Q 007053 360 --K-----------GPELLT--MWFGE------S---EANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAG 411 (620)
Q Consensus 360 --~-----------~~~l~~--~~~g~------s---e~~i~~if~~----A~~~~p~IL~iDEiD~l~~~r~~~~~~~~ 411 (620)
. .+++.. .-... . -..++.+.+. +..+...|++|||+|.|..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 0 112210 00001 0 1223333222 2234457999999999853
Q ss_pred CchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHH
Q 007053 412 GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRA 491 (620)
Q Consensus 412 ~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~ 491 (620)
...+.||..++.... +.++|..|+.++.+.|.+++ |+ ..+.|++|+.++..++|+.......+. +..+..
T Consensus 156 ----~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~ 225 (351)
T PRK09112 156 ----NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEA 225 (351)
T ss_pred ----HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHH
Confidence 235668888876433 34444456778888899987 88 599999999999999998743222211 222456
Q ss_pred HHhhcCCC
Q 007053 492 LAKYTQGF 499 (620)
Q Consensus 492 LA~~t~G~ 499 (620)
++..+.|-
T Consensus 226 i~~~s~G~ 233 (351)
T PRK09112 226 LLQRSKGS 233 (351)
T ss_pred HHHHcCCC
Confidence 66666554
No 157
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.05 E-value=1.1e-10 Score=108.10 Aligned_cols=110 Identities=27% Similarity=0.349 Sum_probs=69.8
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCccee------eeeccc--cccchHHHHHhhhccCCeeeeeccchhHHh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWFGE--SEANVREIFDKARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~------~~~~g~--se~~i~~if~~A~~~~p~IL~iDEiD~l~~ 401 (620)
+|||+||||||||++|+.+|+.++.+++.+.++... ..|.-. ........+..+.. .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 589999999999999999999999999888876532 222211 00001111111111 45799999999854
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCCC-----------Ccc------eEEEEccCCCCC----CCcccccCCCCC
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 456 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~------~viVIatTn~~~----~Ld~al~rpgRf 456 (620)
..+++.|+..++.-. ... ++.+|+|+|..+ .+++++++ ||
T Consensus 79 -------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 335555655554321 011 389999999988 89999988 76
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=1.7e-09 Score=114.18 Aligned_cols=173 Identities=17% Similarity=0.244 Sum_probs=113.8
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee--c
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW--F 369 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~--~ 369 (620)
+|++|.|++.+++.|+..+.. -..++.+||+||+|+|||++|+++|+.+-+....-..+++..-. .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 589999999999999988753 13456789999999999999999999764322111122221111 1
Q ss_pred cc--cccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 370 GE--SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 370 g~--se~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
|. .-..++++.+.+ ..+...|++||++|.+.. ...+.||..++..+ .++++|.+|+.+
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~--------------~a~naLLK~LEepp--~~t~~il~~~~~ 133 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE--------------QAQNAFLKTIEEPP--KGVFIILLCENL 133 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH--------------HHHHHHHHHhcCCC--CCeEEEEEeCCh
Confidence 11 112355555433 233456999999988742 24677888888543 334445455778
Q ss_pred CCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCC
Q 007053 444 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 498 (620)
Q Consensus 444 ~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G 498 (620)
+.+.|.+++ |+. .++|++|+.++....++..+... . +..+..++..+.|
T Consensus 134 ~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~~~l~~~~~g 182 (313)
T PRK05564 134 EQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYNDI--K-EEEKKSAIAFSDG 182 (313)
T ss_pred HhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcCC--C-HHHHHHHHHHcCC
Confidence 899999988 775 89999999999888887654321 1 2224455555554
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05 E-value=8.2e-10 Score=119.77 Aligned_cols=141 Identities=23% Similarity=0.419 Sum_probs=87.2
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------eeeecC----
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISVKG---- 361 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~-------~i~i~~---- 361 (620)
.+++.+-+...+.+...+. ..++++|+||||||||++|+++|..+... ++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 3455555666666554443 25789999999999999999999887431 122211
Q ss_pred cceeeee----cccc--ccchHHHHHhhhcc--CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc-------
Q 007053 362 PELLTMW----FGES--EANVREIFDKARQS--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD------- 426 (620)
Q Consensus 362 ~~l~~~~----~g~s--e~~i~~if~~A~~~--~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld------- 426 (620)
.+++..+ .|-. ...+.+++..|... .|++||||||++-.. .+++..+++.|+
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-------------~kiFGel~~lLE~~~rg~~ 305 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-------------SKVFGEVMMLMEHDKRGEN 305 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-------------HHhhhhhhhhccccccccc
Confidence 1222111 1100 11234455666543 579999999987432 233444444333
Q ss_pred -------------CCCCcceEEEEccCCCCC----CCcccccCCCCCCceeeeeC
Q 007053 427 -------------GMSAKKTVFIIGATNRPD----IIDPALLRPGRLDQLIYIPL 464 (620)
Q Consensus 427 -------------~~~~~~~viVIatTn~~~----~Ld~al~rpgRf~~~i~~~~ 464 (620)
.+....++.||||+|..+ .+|.|++| ||. .+++.+
T Consensus 306 ~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 306 WSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred cceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 123345899999999988 79999999 996 566654
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.05 E-value=8.3e-10 Score=107.76 Aligned_cols=148 Identities=24% Similarity=0.338 Sum_probs=95.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhc-------e-e-----ee---cCcceeeeec-c--ccccchHHHHHhhhc--
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQAN-------F-I-----SV---KGPELLTMWF-G--ESEANVREIFDKARQ-- 385 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~-------~-i-----~i---~~~~l~~~~~-g--~se~~i~~if~~A~~-- 385 (620)
.+..+|||||+|+|||++|+++++.+... . . .+ +.+++..-.. + -....++.+.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999987432 0 0 00 0111110000 0 112345555555543
Q ss_pred --cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeee
Q 007053 386 --SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 463 (620)
Q Consensus 386 --~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~ 463 (620)
....||+|||+|.+.. ...+.|+..|+...+ ..++|.+|+.+..+.+++++ |+. .+.|+
T Consensus 93 ~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~~-~~~~~ 153 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE--------------AAANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RCQ-VLPFP 153 (188)
T ss_pred ccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hcE-EeeCC
Confidence 3457999999999853 235668888876433 34455556667889999987 774 89999
Q ss_pred CCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCC
Q 007053 464 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 498 (620)
Q Consensus 464 ~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G 498 (620)
+|+.++..++++.. .+. +..+..++..+.|
T Consensus 154 ~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 154 PLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred CCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 99999999998876 232 2235556655554
No 161
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.03 E-value=3.7e-09 Score=104.31 Aligned_cols=168 Identities=20% Similarity=0.354 Sum_probs=121.4
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcc
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 363 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~ 363 (620)
..+.+...+|.|.+.+++.|.+.....+.. .|..+|||+|..|||||+|++|+.++. +..+++|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 445688999999999999998776654322 367889999999999999999999988 45677777665
Q ss_pred eeeeeccccccchHHHHHhhhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC--cceEEEEccC
Q 007053 364 LLTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGAT 440 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~--~~~viVIatT 440 (620)
+. .+..+++..+.. .+-|||+|++-- + ..+.-...|-..|+|-.. ..+|+|.+|+
T Consensus 124 l~---------~Lp~l~~~Lr~~~~kFIlFcDDLSF----------e---~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 124 LA---------TLPDLVELLRARPEKFILFCDDLSF----------E---EGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred Hh---------hHHHHHHHHhcCCceEEEEecCCCC----------C---CCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 52 345566655543 357999998621 1 111223445555666432 3589999999
Q ss_pred CCCCCCccccc--------------------CCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC
Q 007053 441 NRPDIIDPALL--------------------RPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK 485 (620)
Q Consensus 441 n~~~~Ld~al~--------------------rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~ 485 (620)
|+.+.|+..+. -..||...+.|.+++.++-..|+..+.+...+.-
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 99887652211 1358999999999999999999999998777653
No 162
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=1.2e-09 Score=117.28 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=109.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee-----------
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI----------- 357 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i----------- 357 (620)
.+..+++|.|.+.+++.|.+.+.. -..++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 456789999999999999988775 134677999999999999999999987732110
Q ss_pred ---------------eecCcceeeeec---cc--------cccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCC
Q 007053 358 ---------------SVKGPELLTMWF---GE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSV 407 (620)
Q Consensus 358 ---------------~i~~~~l~~~~~---g~--------se~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~ 407 (620)
.-+.+++..-.. .. .-..++++.+.+ ....+.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 001122221110 10 012244443332 235578999999998742
Q ss_pred CCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 408 GDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 408 ~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
...+.||..++... ...++|.+|+.++.+.+.+++ |+. .+.|++|+.++..++|....
T Consensus 156 --------~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 --------NAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred --------HHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc
Confidence 35677888887533 345666688888888888877 774 89999999999999998764
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-09 Score=124.86 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=125.0
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i 359 (620)
.-..+-++|-++.++++.+.+.. ....+-+|.|+||+|||.++..+|... +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 44677789999999988888775 234567889999999999999999875 3456777
Q ss_pred cCccee--eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 360 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 360 ~~~~l~--~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
+...+. .+|-|+.|+.++.+.++.....+.||||||||.+.+...... + +.....++.-.| .++.+-+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaL-------ARGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPAL-------ARGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHH-------hcCCeEEE
Confidence 777765 589999999999999999988899999999999987543321 1 111222222222 24556777
Q ss_pred ccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 438 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 438 atTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
++|..-+ .-|+||.| ||. .|.+..|+.++-..||+-.-..
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHH
Confidence 7774322 35899999 997 8999999999999999875433
No 164
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=2.2e-09 Score=110.42 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=113.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh-cee--e-ecC----ccee---eeeccccc------cchHHH---H-Hhhhcc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA-NFI--S-VKG----PELL---TMWFGESE------ANVREI---F-DKARQS 386 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~-~~i--~-i~~----~~l~---~~~~g~se------~~i~~i---f-~~A~~~ 386 (620)
+..++|+||+|+|||++++.+++.+.. .+. . +++ .+++ ....|... ..++.+ + ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 345889999999999999999988752 221 1 111 0111 00111111 011122 1 222345
Q ss_pred CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceE--EEEccCCCCCCCc----ccccCCCCCCcee
Q 007053 387 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV--FIIGATNRPDIID----PALLRPGRLDQLI 460 (620)
Q Consensus 387 ~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~v--iVIatTn~~~~Ld----~al~rpgRf~~~i 460 (620)
.+.+|+|||++.+... ....+..+...... ....+ ++++.....+.+. ..+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~--~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE-----------LLEELRMLSNFQTD--NAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccCCHH-----------HHHHHHHHhCcccC--CCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 6789999999887421 11222222222111 11222 3333322111221 12434 777789
Q ss_pred eeeCCChhHHHHHHHHhhccCCC-----CCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 007053 461 YIPLPDEESRLQIFKACLRKSPV-----SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPE 535 (620)
Q Consensus 461 ~~~~P~~~eR~~Il~~~l~~~~l-----~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~ 535 (620)
++++.+.++..+++...++.... -.+..+..|++.+.|.. +.|..+|..+...|..+.
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~---------------- 250 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE---------------- 250 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC----------------
Confidence 99999999999999988754322 12335778888999884 559999999988887653
Q ss_pred ccccccccchhhhhHHHHHHHHHHHh
Q 007053 536 AMEEDVEDEVAEIKAVHFEESMKYAR 561 (620)
Q Consensus 536 ~~~~~~~~~~~~vt~~df~~Al~~~~ 561 (620)
...|+.++++.++..++
T Consensus 251 ---------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 ---------KREIGGEEVREVIAEID 267 (269)
T ss_pred ---------CCCCCHHHHHHHHHHhh
Confidence 23599999999998765
No 165
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=6.3e-10 Score=121.20 Aligned_cols=196 Identities=24% Similarity=0.371 Sum_probs=124.5
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
...+|++|.|-.....++.+.... .......|||.|.+||||.++|+++.+.+ +.+|+.+||..+-
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 457899999999888888777664 22346679999999999999999999987 5699999997552
Q ss_pred -----ee--------eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC-----
Q 007053 366 -----TM--------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG----- 427 (620)
Q Consensus 366 -----~~--------~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~----- 427 (620)
+. |.|.....-...|+.|..+ .||||||..|.. .+...||..+..
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl--------------~LQaKLLRVLQEkei~r 371 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL--------------PLQAKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH--------------HHHHHHHHHHhhceEEe
Confidence 22 2222232244567777665 899999987753 233445554431
Q ss_pred ---CCC-cceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhcc----CCCC-CCc
Q 007053 428 ---MSA-KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRK----SPVS-KDV 487 (620)
Q Consensus 428 ---~~~-~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~----~~l~-~dv 487 (620)
... .-.|.||||||+. |-.++ ..|+|.. ++.+..|...+|.+ +...++.+ .+.. ..+
T Consensus 372 vG~t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 111 2379999999973 33333 2356643 44566777777765 33333332 2211 123
Q ss_pred ChHHHHhh-cCCCCC--CcHHHHHHHHHHHH
Q 007053 488 DLRALAKY-TQGFSG--ADITEICQRACKYA 515 (620)
Q Consensus 488 ~l~~LA~~-t~G~sg--~DL~~l~~~A~~~A 515 (620)
.-+.++.. ...|.| ++|+++++++....
T Consensus 449 s~~a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 449 SPDALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred CHHHHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 33333322 234555 89999999988633
No 166
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.98 E-value=4.2e-09 Score=117.11 Aligned_cols=224 Identities=20% Similarity=0.266 Sum_probs=143.9
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh----------hceeeecCcceee----------eeccccc------cchHHHHHh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLT----------MWFGESE------ANVREIFDK 382 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~----------~~~i~i~~~~l~~----------~~~g~se------~~i~~if~~ 382 (620)
..++++|-||||||.+++.+.+++. +.|++||+-.|.+ .+.|+.. ..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3689999999999999999998763 5678888766542 1122211 123333432
Q ss_pred h-hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccC--CCCCC-c
Q 007053 383 A-RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR--PGRLD-Q 458 (620)
Q Consensus 383 A-~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~r--pgRf~-~ 458 (620)
. -...++||+|||+|.|+... ..++..|+.... .++.+++||+..|..+....-|.. ..|++ .
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccce
Confidence 1 12457999999999999532 235666655543 234577888887766532222210 12543 4
Q ss_pred eeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 007053 459 LIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGA--DITEICQRACKYAIRENIEKDIERERRRSENPEA 536 (620)
Q Consensus 459 ~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~--DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~ 536 (620)
.+.|.+++.++..+|+...+.....-..--++-+|+.....||. --..+|++|...|..+....
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~-------------- 635 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG-------------- 635 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc--------------
Confidence 78899999999999999998776333333345556666556653 23467888887777665310
Q ss_pred cccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc
Q 007053 537 MEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSR 583 (620)
Q Consensus 537 ~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~~~ 583 (620)
.......|+..|+.+|++.+--+.-..-+.++....+.|..++
T Consensus 636 ----k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~fl~ai 678 (767)
T KOG1514|consen 636 ----KLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIFLTAI 678 (767)
T ss_pred ----cccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHHHHHH
Confidence 0122456899999999998877666666666666666655544
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=8e-10 Score=99.77 Aligned_cols=126 Identities=33% Similarity=0.436 Sum_probs=78.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhc---eeeecCcceeeee--------------ccccccchHHHHHhhhccCCee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMW--------------FGESEANVREIFDKARQSAPCV 390 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~---~i~i~~~~l~~~~--------------~g~se~~i~~if~~A~~~~p~I 390 (620)
+..++|+||||||||++++.+|..+... ++.+++......+ ........+..+..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998765 7777766543221 1223445677788888777899
Q ss_pred eeeccchhHHhhcCCCCCCCCCchhHHHHHH--hhhhcCCCCcceEEEEccCCC-CCCCcccccCCCCCCceeeeeCC
Q 007053 391 LFFDELDSIATQRGSSVGDAGGAADRVLNQL--LTEMDGMSAKKTVFIIGATNR-PDIIDPALLRPGRLDQLIYIPLP 465 (620)
Q Consensus 391 L~iDEiD~l~~~r~~~~~~~~~~~~rvl~~L--L~~ld~~~~~~~viVIatTn~-~~~Ld~al~rpgRf~~~i~~~~P 465 (620)
||+||++.+...... ...... ..............+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE----------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH----------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998643211 000000 000011112345677778875 3334444444 77777776554
No 168
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.97 E-value=2.9e-09 Score=112.24 Aligned_cols=149 Identities=26% Similarity=0.355 Sum_probs=97.8
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---------------------
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--------------------- 353 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~--------------------- 353 (620)
++.+.+....++..+.... + ..++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4555666666666555521 1 2244699999999999999999999886
Q ss_pred ---hceeeecCcceeeeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 354 ---ANFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 354 ---~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
..++.++.++..... .....++++-+.... +..-|++|||+|.+.. ...+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhc
Confidence 355666655542211 122334444433322 3357999999999874 24566777776
Q ss_pred CCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHH
Q 007053 427 GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFK 475 (620)
Q Consensus 427 ~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~ 475 (620)
.. ..+..+|.+||.++.+-+.+++ |+. .+.|++|+...+....+
T Consensus 135 ep--~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 EP--PKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred cC--CCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 43 3456777788899999898887 775 78888766655555444
No 169
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2.1e-09 Score=113.28 Aligned_cols=177 Identities=19% Similarity=0.262 Sum_probs=119.8
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc----------eeeecC
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 361 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~----------~i~i~~ 361 (620)
.|++|.|++.+++.|+..+... .-++.+||+||+|+||+++|.++|+.+-+. +...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999988741 236789999999999999999999886321 122334
Q ss_pred cceeeeec-----ccc--------------------ccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCC
Q 007053 362 PELLTMWF-----GES--------------------EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGG 412 (620)
Q Consensus 362 ~~l~~~~~-----g~s--------------------e~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~ 412 (620)
+++.--+. |.. -..++++.+.+. .+...|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 44431110 110 013455544433 23457999999998752
Q ss_pred chhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHH
Q 007053 413 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRAL 492 (620)
Q Consensus 413 ~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~L 492 (620)
...+.||..|+... . .++|..|+.++.|.|.+++ |+. .+.|++|+.++..++|+........ +.++..+
T Consensus 139 ---~aaNaLLK~LEEPp--~-~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 139 ---AAANALLKTLEEPG--N-GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred ---HHHHHHHHHHhCCC--C-CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 24577888888654 2 3455566788999999988 874 8999999999999999876432211 1224667
Q ss_pred HhhcCCCCCC
Q 007053 493 AKYTQGFSGA 502 (620)
Q Consensus 493 A~~t~G~sg~ 502 (620)
+..+.|-.+.
T Consensus 208 ~~~a~Gs~~~ 217 (314)
T PRK07399 208 LALAQGSPGA 217 (314)
T ss_pred HHHcCCCHHH
Confidence 7766654433
No 170
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.96 E-value=1.8e-09 Score=123.12 Aligned_cols=54 Identities=30% Similarity=0.500 Sum_probs=46.3
Q ss_pred eeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 286 ~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
+.+|...|+++.|.++.++.++..+.. .++++|+||||||||++++++++.+..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCc
Confidence 456788899999999999988877763 347999999999999999999998854
No 171
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.94 E-value=8.4e-10 Score=120.18 Aligned_cols=245 Identities=21% Similarity=0.317 Sum_probs=149.0
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee--
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL-- 365 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~-- 365 (620)
..+.++.|.....+++++.+...- .....|||+|++||||.++|++|...+ +.||+.+||..+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456789999999999988877521 235679999999999999999999877 4599999997653
Q ss_pred ---eeeccccccc-------hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc-----CCCC
Q 007053 366 ---TMWFGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD-----GMSA 430 (620)
Q Consensus 366 ---~~~~g~se~~-------i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld-----~~~~ 430 (620)
+..+|+.... -...|+.|..+ .||||||..+... +...||..+. .+..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCC
Confidence 2234433221 12356666555 9999999887632 2333444432 1111
Q ss_pred ----cceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhccC-----CCCCCcChH
Q 007053 431 ----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRKS-----PVSKDVDLR 490 (620)
Q Consensus 431 ----~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~~-----~l~~dv~l~ 490 (620)
.-+|.||++||+. |...+. .|+|.. ++.+..|...+|.+ +++++++.. .-...++-+
T Consensus 270 ~~~i~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~ 346 (464)
T COG2204 270 NKPIKVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPE 346 (464)
T ss_pred CcccceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 2368999999873 333332 355542 66677888877776 455555332 112344555
Q ss_pred HHHhh-cCCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHH-H-hccC--Ccccc------cccccchhhhhHHHHHHHH
Q 007053 491 ALAKY-TQGFSG--ADITEICQRACKYAIRENIEKDIERER-R-RSEN--PEAME------EDVEDEVAEIKAVHFEESM 557 (620)
Q Consensus 491 ~LA~~-t~G~sg--~DL~~l~~~A~~~A~~~~i~~~~~~~~-~-~~~~--~~~~~------~~~~~~~~~vt~~df~~Al 557 (620)
.++.. ++.|.| ++|++++++++..+-...+........ . .... ..... ....+....+..+.+..||
T Consensus 347 a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~~aL 426 (464)
T COG2204 347 ALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPLEILAPAAEALAGPAGEAALPGLPLGEALAEVERQLILQAL 426 (464)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHhcCCccccchhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 55543 345665 899999999988876654443211000 0 0000 00000 0012234567777788888
Q ss_pred HHHhhcCCh
Q 007053 558 KYARRSVSD 566 (620)
Q Consensus 558 ~~~~psvs~ 566 (620)
...+.+++.
T Consensus 427 ~~~~g~~~~ 435 (464)
T COG2204 427 ERTGGNKSE 435 (464)
T ss_pred HHhCCCHHH
Confidence 888776554
No 172
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.94 E-value=1.6e-08 Score=99.31 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=95.6
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-h----hceeeecCccee
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-Q----ANFISVKGPELL 365 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-~----~~~i~i~~~~l~ 365 (620)
..+.||+|.++...+|.-+... ..-++++|.|||||||||-+.++|+++ | --++++++++-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 4578999999999999866553 234579999999999999999999987 3 235677776532
Q ss_pred eeeccccccchHHHHHhhhc-cC---CeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 366 TMWFGESEANVREIFDKARQ-SA---PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~-~~---p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
+-- .-++--+.|..-+- -+ -.||++||+|++.... +.+.+|.+.- .. +...+..++|
T Consensus 91 GID---vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA-------QQAlRRtMEi-------yS--~ttRFalaCN 151 (333)
T KOG0991|consen 91 GID---VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA-------QQALRRTMEI-------YS--NTTRFALACN 151 (333)
T ss_pred ccH---HHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH-------HHHHHHHHHH-------Hc--ccchhhhhhc
Confidence 110 01111223333222 12 2599999999986321 1133333322 22 2234556788
Q ss_pred CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhc
Q 007053 442 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 442 ~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~ 479 (620)
..+.+-+.+.+ |+. .+.+...+..+...-|....+
T Consensus 152 ~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 152 QSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAK 186 (333)
T ss_pred chhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHH
Confidence 88887777776 775 556666666655554444443
No 173
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.93 E-value=1e-08 Score=106.12 Aligned_cols=61 Identities=33% Similarity=0.634 Sum_probs=47.9
Q ss_pred ccccchHHHHHHH---HHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh--hceeeecCccee
Q 007053 294 EDIGGLENVKREL---QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELL 365 (620)
Q Consensus 294 ~di~Gl~~~k~~L---~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~l~ 365 (620)
+-++|+.++.+.. .+++.. |.-..++||+.||||||||.||-++|+++| .||+.+++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 4577888777663 333332 445689999999999999999999999996 588888888775
No 174
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.91 E-value=2.8e-09 Score=119.44 Aligned_cols=194 Identities=20% Similarity=0.302 Sum_probs=114.1
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee-
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 366 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~- 366 (620)
..|+++.|.....+++++.+...- ....+|||+|++||||+++|+++.+.+ +.+|+.++|..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 568899999998888888776421 234679999999999999999999765 56999999986632
Q ss_pred ----eecccccc--------chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----
Q 007053 367 ----MWFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 429 (620)
Q Consensus 367 ----~~~g~se~--------~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----- 429 (620)
..+|..+. .-..+|+.|.. ..||||||+.|... +...|+..++...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecC
Confidence 12222111 12234555543 48999999998643 2333444443211
Q ss_pred C----cceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhccCCCC--CCcChHHH
Q 007053 430 A----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRKSPVS--KDVDLRAL 492 (620)
Q Consensus 430 ~----~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~~~l~--~dv~l~~L 492 (620)
. ..++.+|++|+..- ... ...|+|.. .+.+..|...+|.+ +++.+++..... ..++-+.+
T Consensus 341 ~~~~~~~dvRiIaat~~~l--~~~-v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 417 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCAL--TTA-VQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAA 417 (526)
T ss_pred CCceeeecceEEeccCCCH--HHH-hhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 1 12457888887541 111 11223321 35666676666654 455555432111 11222221
Q ss_pred H--------hhcCCCCC--CcHHHHHHHHHHHH
Q 007053 493 A--------KYTQGFSG--ADITEICQRACKYA 515 (620)
Q Consensus 493 A--------~~t~G~sg--~DL~~l~~~A~~~A 515 (620)
. -....|.| ++|++++++++..+
T Consensus 418 ~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 418 QVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 1 11234544 88888888887654
No 175
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.91 E-value=1.4e-08 Score=113.19 Aligned_cols=144 Identities=26% Similarity=0.390 Sum_probs=85.9
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh----------------
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 354 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~---------------- 354 (620)
..|.++.|...+++.+.-.+. ...+++|.||||||||++++.++..+..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 468899998888766554332 3568999999999999999999874411
Q ss_pred ------------ceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHh
Q 007053 355 ------------NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 422 (620)
Q Consensus 355 ------------~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL 422 (620)
+|....++......+|.....-...+..|.. .+|||||++.+.. .++..|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~--------------~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR--------------SVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH--------------HHHHHHH
Confidence 1111111100000111110011123333333 5999999988642 3455555
Q ss_pred hhhcCCC-----------CcceEEEEccCCCC------C-----------------CCcccccCCCCCCceeeeeCCChh
Q 007053 423 TEMDGMS-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDEE 468 (620)
Q Consensus 423 ~~ld~~~-----------~~~~viVIatTn~~------~-----------------~Ld~al~rpgRf~~~i~~~~P~~~ 468 (620)
..|+... -..++.+|+++|.- + .|...|+. |||..+.++.++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 5554321 11367888888852 1 37777777 99999999877544
No 176
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.90 E-value=5.3e-09 Score=111.02 Aligned_cols=192 Identities=24% Similarity=0.290 Sum_probs=111.4
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee---
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--- 366 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~--- 366 (620)
++++.|.+...+.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+-.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4567788887777777766422 235679999999999999999998765 46899999987631
Q ss_pred --eecccccc-------chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------
Q 007053 367 --MWFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 429 (620)
Q Consensus 367 --~~~g~se~-------~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-------- 429 (620)
.++|.... .....|..+. ...|||||++.|... +...|+..++...
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCc
Confidence 12222111 0122344443 348999999998643 3344444443211
Q ss_pred -CcceEEEEccCCCC-------CCCcccccCCCCCCceeeeeCCChhHHHH----HHHHhhccC----CCC--CCcChHH
Q 007053 430 -AKKTVFIIGATNRP-------DIIDPALLRPGRLDQLIYIPLPDEESRLQ----IFKACLRKS----PVS--KDVDLRA 491 (620)
Q Consensus 430 -~~~~viVIatTn~~-------~~Ld~al~rpgRf~~~i~~~~P~~~eR~~----Il~~~l~~~----~l~--~dv~l~~ 491 (620)
...++.||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ +++.++... ... ..++-+.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 01247788877653 123344443 553 34556666666543 555554322 111 1233333
Q ss_pred HHhh-cCCCCC--CcHHHHHHHHHHHH
Q 007053 492 LAKY-TQGFSG--ADITEICQRACKYA 515 (620)
Q Consensus 492 LA~~-t~G~sg--~DL~~l~~~A~~~A 515 (620)
+... ...|.| ++|++++++|+..+
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 3322 233544 78888888887654
No 177
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.89 E-value=1.6e-08 Score=110.76 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=86.4
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCcc-eeeeecccc
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE-LLTMWFGES 372 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~-l~~~~~g~s 372 (620)
+.|.+++++.+...+. ...++||+||||||||++|++++..++. +|..+.+.- .....+|..
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 5566666666654443 3578999999999999999999987643 344333210 011122211
Q ss_pred -ccch--HHHHHhhhcc---CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------CcceEEEEc
Q 007053 373 -EANV--REIFDKARQS---APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIG 438 (620)
Q Consensus 373 -e~~i--~~if~~A~~~---~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~~~~viVIa 438 (620)
-... ..-|.....+ ...+||+|||..+. ..+.+.||..|..-. .....++++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 0000 1122221111 22499999997644 346677777773211 112234455
Q ss_pred cCCCCC---CCcccccCCCCCCceeeeeCCC-hhHHHHHHHHh
Q 007053 439 ATNRPD---IIDPALLRPGRLDQLIYIPLPD-EESRLQIFKAC 477 (620)
Q Consensus 439 tTn~~~---~Ld~al~rpgRf~~~i~~~~P~-~~eR~~Il~~~ 477 (620)
|||... ...+++.. ||-..+.+++|+ .++-.+|+...
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 556432 12247776 998789999997 45657788764
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.88 E-value=2e-08 Score=112.91 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=96.8
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh-ceeee---cCcceeeeeccc
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISV---KGPELLTMWFGE 371 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~-~~i~i---~~~~l~~~~~g~ 371 (620)
|.|.+.++..+.-.+...... ..-....+....+|||+|+||||||++|+++++.+.. .|+.. ++..+.......
T Consensus 205 i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 678888887776554432111 0001112233447999999999999999999987643 23321 222221111000
Q ss_pred c---ccch-HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEEE
Q 007053 372 S---EANV-REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFI 436 (620)
Q Consensus 372 s---e~~i-~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~viV 436 (620)
. +..+ ...+..| ...+++|||++.+.+. ....|+..|+.-. -...+.|
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~--------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDS--------------DRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHH--------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 0 0000 0111122 2359999999997632 3344555553321 1236789
Q ss_pred EccCCCCC-------------CCcccccCCCCCCceeee-eCCChhHHHHHHHHhhc
Q 007053 437 IGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEESRLQIFKACLR 479 (620)
Q Consensus 437 IatTn~~~-------------~Ld~al~rpgRf~~~i~~-~~P~~~eR~~Il~~~l~ 479 (620)
|||+|..+ .|++++++ |||.++.+ +.|+.+...+|.++.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999653 58899998 99876554 78999999999988653
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=5.2e-09 Score=111.28 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=103.5
Q ss_pred ccccccc-hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce--------------
Q 007053 292 NWEDIGG-LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------------- 356 (620)
Q Consensus 292 ~~~di~G-l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-------------- 356 (620)
.|+.|.| .+.+++.|+..+.. -..++.+||+||+|+||+++|+++|+.+-+.-
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777777 88899999888763 13467789999999999999999998763210
Q ss_pred --eeecCcceeeeec-cc--cccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 357 --ISVKGPELLTMWF-GE--SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 357 --i~i~~~~l~~~~~-g~--se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
..-+.+++.--.. |. .-..++++.+.+. .+...|++|||+|.+.. ...+.||..|+.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~--------------~a~NaLLK~LEE 136 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA--------------SAANSLLKFLEE 136 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH--------------HHHHHHHHHhcC
Confidence 0001122211111 11 1123444443332 23346999999988752 356788998886
Q ss_pred CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHH
Q 007053 428 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~ 476 (620)
.+ ..+++|.+|+.+..|.|.+++ |+. .++|++|+.++..++|+.
T Consensus 137 Pp--~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 PS--GGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CC--CCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 43 445566677778899999988 775 899999999988777764
No 180
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.88 E-value=1.2e-09 Score=105.28 Aligned_cols=113 Identities=27% Similarity=0.384 Sum_probs=74.2
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh----ceeeecCcceeeeeccccccchHHHHHhhh----ccCCeeeeeccchh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDS 398 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~----~~i~i~~~~l~~~~~g~se~~i~~if~~A~----~~~p~IL~iDEiD~ 398 (620)
|...+||.||+|||||.+|+++|..+.. +++.++++++.. ..+.+..+...+..+. .....||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999996 999999988754 1122223333332221 11123999999999
Q ss_pred HHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------CcceEEEEccCCCCC
Q 007053 399 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD 444 (620)
Q Consensus 399 l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~~~~viVIatTn~~~ 444 (620)
..+..+ .........+.+.||..|++.. ...++++|+|+|--.
T Consensus 80 a~~~~~---~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNS---GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTT---TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccc---ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 887521 1112233467788888886431 124688999998653
No 181
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.88 E-value=4.2e-09 Score=112.84 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=120.4
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----hhceeeecCcce
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPEL 364 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~~~l 364 (620)
....+.++.|-+...+++++.+... .+...+||++|++||||+++|+.|+..+ +.+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 4456788899888888888877751 1235679999999999999999998544 458999999876
Q ss_pred eee-----eccc-------cccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC----
Q 007053 365 LTM-----WFGE-------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM---- 428 (620)
Q Consensus 365 ~~~-----~~g~-------se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~---- 428 (620)
... .+|. ....-..+|+.|..+ +||+|||+.|.+. ....|+..|+..
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~r 204 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRR 204 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCHh--------------HHHHHHHHHHcCceEe
Confidence 422 1221 233344567666655 9999999998753 234455655541
Q ss_pred -----CCcceEEEEccCCCC--CCCcc--cccCCCCCCceeeeeCCChhHHH----HHHHHhh----ccCCCCCCcChHH
Q 007053 429 -----SAKKTVFIIGATNRP--DIIDP--ALLRPGRLDQLIYIPLPDEESRL----QIFKACL----RKSPVSKDVDLRA 491 (620)
Q Consensus 429 -----~~~~~viVIatTn~~--~~Ld~--al~rpgRf~~~i~~~~P~~~eR~----~Il~~~l----~~~~l~~dv~l~~ 491 (620)
.....|.+|++|+.. +.+-. .+.+ -|+. +.+..|...+|. .+.+.++ +........+..+
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 112367888887642 22222 3332 0343 344555555553 3445544 3333333333322
Q ss_pred HHhhcC--CCC--CCcHHHHHHHHHHHHHHH
Q 007053 492 LAKYTQ--GFS--GADITEICQRACKYAIRE 518 (620)
Q Consensus 492 LA~~t~--G~s--g~DL~~l~~~A~~~A~~~ 518 (620)
..+... -|. -++|++++++++..+...
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 222222 233 489999999998887533
No 182
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.87 E-value=2.2e-09 Score=105.25 Aligned_cols=45 Identities=38% Similarity=0.623 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|.||.|++..|+.|.-.... .+++||+||||||||++|+++...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999998766653 4789999999999999999999865
No 183
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.87 E-value=1.3e-09 Score=98.76 Aligned_cols=107 Identities=27% Similarity=0.396 Sum_probs=57.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCc-cee-----ee-eccccccchHHHHHhhhc-cCCeeeeeccchhHHh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELL-----TM-WFGESEANVREIFDKARQ-SAPCVLFFDELDSIAT 401 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~-~l~-----~~-~~g~se~~i~~if~~A~~-~~p~IL~iDEiD~l~~ 401 (620)
++||+|+||+|||++|+++|+.++..|..|.+. +++ +. ++.... ..|+..+. --..|+++|||.+..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~----~~f~~~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET----GEFEFRPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT----TEEEEEE-TT-SSEEEEETGGGS-H
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC----CeeEeecChhhhceeeecccccCCH
Confidence 589999999999999999999999999988763 443 11 111111 11111110 0014999999988554
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCC---------CCcceEEEEccCCCCC-----CCcccccCCCCC
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGM---------SAKKTVFIIGATNRPD-----IIDPALLRPGRL 456 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~---------~~~~~viVIatTn~~~-----~Ld~al~rpgRf 456 (620)
++.+.||..|..- .-...++||||-|..+ .|+++++. ||
T Consensus 77 --------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 --------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp --------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4566677766421 1123588999999876 46677665 66
No 184
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=6.6e-09 Score=110.13 Aligned_cols=151 Identities=20% Similarity=0.279 Sum_probs=100.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhce----------------eeecCcceeeeecc-----ccccchHHHHHhhh-
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANF----------------ISVKGPELLTMWFG-----ESEANVREIFDKAR- 384 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~----------------i~i~~~~l~~~~~g-----~se~~i~~if~~A~- 384 (620)
.++.+||+||+|+|||++|+++|+.+.+.- ..-+.+++..-... -.-..+|++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999999874421 01112233211111 11234566554443
Q ss_pred ---ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceee
Q 007053 385 ---QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 461 (620)
Q Consensus 385 ---~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~ 461 (620)
.+...|++||++|.+.. ...+.||..|+.- ..++++|.+|+.++.|.|.+++ |+. .+.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~--------------~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~-~~~ 161 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNR--------------NAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ-QQA 161 (328)
T ss_pred ccccCCCeEEEECChhhCCH--------------HHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce-eee
Confidence 24456999999999753 3567888888863 3467777888889999999998 886 699
Q ss_pred eeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCC
Q 007053 462 IPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGF 499 (620)
Q Consensus 462 ~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~ 499 (620)
|++|+.++..+.|...... ..+.....++..+.|-
T Consensus 162 ~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 162 CPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred CCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 9999999988888765421 1122234455555553
No 185
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.86 E-value=3.1e-09 Score=114.49 Aligned_cols=203 Identities=24% Similarity=0.325 Sum_probs=122.1
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
+......|+|......++.+.+...- .....|||.|.+||||..+|++|...+ ..+|+.+||+.+-
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 35677789999999999888877522 235679999999999999999999887 4689999998664
Q ss_pred -----eeeccccccch-------HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHH-HHHhhhhcCCCC-c
Q 007053 366 -----TMWFGESEANV-------REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL-NQLLTEMDGMSA-K 431 (620)
Q Consensus 366 -----~~~~g~se~~i-------~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl-~~LL~~ld~~~~-~ 431 (620)
+..+|.-.... +.-|+.|.. ..||+|||..|...-+. ..-|++ +.-+..+-+-.. .
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~lQa-------KLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLALQA-------KLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHHHHH-------HHHHHHhhcceeecCCCceeE
Confidence 23333322221 223444444 48999999887543211 111111 111111211111 1
Q ss_pred ceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhcc----CCC-CCCcChHHHHhh
Q 007053 432 KTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRK----SPV-SKDVDLRALAKY 495 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~----~~l-~~dv~l~~LA~~ 495 (620)
-.|.||++||+ +|..+++ .|+|.. ++.+..|...+|.. +-++++++ ... ....+-+.+...
T Consensus 357 VDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L 433 (550)
T COG3604 357 VDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELL 433 (550)
T ss_pred EEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHH
Confidence 26899999998 4545554 366643 33455666666653 22333332 222 112222333322
Q ss_pred c-CCCCC--CcHHHHHHHHHHHH
Q 007053 496 T-QGFSG--ADITEICQRACKYA 515 (620)
Q Consensus 496 t-~G~sg--~DL~~l~~~A~~~A 515 (620)
. .+|.| ++|++++++|...|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 2 24555 89999999999988
No 186
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.86 E-value=1.8e-09 Score=103.64 Aligned_cols=132 Identities=27% Similarity=0.457 Sum_probs=78.8
Q ss_pred cchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee-----ee
Q 007053 297 GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----MW 368 (620)
Q Consensus 297 ~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~-----~~ 368 (620)
.|.+...+++++.+.... ..+.+|||+|++||||+++|++|.+.+ +.+|+.++|+.+-. ..
T Consensus 2 iG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 455555555555554322 224679999999999999999999876 46899999987642 22
Q ss_pred ccccc-------cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC-----CCC----cc
Q 007053 369 FGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MSA----KK 432 (620)
Q Consensus 369 ~g~se-------~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~-----~~~----~~ 432 (620)
+|... ..-..+|+.|... +||||||+.|.+. +...|+..|+. +.. ..
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHH--------------HHHHHHHHHhhchhccccccccccc
Confidence 33221 2234677777766 9999999998753 33444444431 111 23
Q ss_pred eEEEEccCCCCCCCcccccCCCCCCce
Q 007053 433 TVFIIGATNRPDIIDPALLRPGRLDQL 459 (620)
Q Consensus 433 ~viVIatTn~~~~Ld~al~rpgRf~~~ 459 (620)
++.||++|+.+ |...+. .|+|...
T Consensus 134 ~~RiI~st~~~--l~~~v~-~g~fr~d 157 (168)
T PF00158_consen 134 DVRIIASTSKD--LEELVE-QGRFRED 157 (168)
T ss_dssp -EEEEEEESS---HHHHHH-TTSS-HH
T ss_pred cceEEeecCcC--HHHHHH-cCCChHH
Confidence 68899999863 333333 3677543
No 187
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.86 E-value=3.2e-09 Score=120.20 Aligned_cols=198 Identities=23% Similarity=0.295 Sum_probs=114.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
+...++++.|.+...+++.+.+.... .....|||+|++||||+++|++|+..+ +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34678889999998888888776522 235679999999999999999999875 4689999998763
Q ss_pred ee-----eccccccc-------hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC----
Q 007053 366 TM-----WFGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---- 429 (620)
Q Consensus 366 ~~-----~~g~se~~-------i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---- 429 (620)
.. .+|..... -...|..+. ..+||||||+.|... +...|+..++...
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERV 322 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEEC
Confidence 21 12211110 011233332 359999999998643 3344555443211
Q ss_pred -C----cceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChh----HHHHHHHHhhccCC----CCCCcC-
Q 007053 430 -A----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEE----SRLQIFKACLRKSP----VSKDVD- 488 (620)
Q Consensus 430 -~----~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~----eR~~Il~~~l~~~~----l~~dv~- 488 (620)
. ..++.+|++|+.. +...+ ..|+|.. .+.+..|... +...|++.++.... ....++
T Consensus 323 ~~~~~~~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~ 399 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITP 399 (534)
T ss_pred CCCceEeecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 0 1246788887653 11111 2234421 3344444444 44456666654321 112233
Q ss_pred --hHHHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 007053 489 --LRALAKYTQGFSGADITEICQRACKYAIR 517 (620)
Q Consensus 489 --l~~LA~~t~G~sg~DL~~l~~~A~~~A~~ 517 (620)
+..|.....--+.++|++++++|...+-.
T Consensus 400 ~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 400 SAIRVLMSCKWPGNVRELENCLERTATLSRS 430 (534)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 23333333222348888889888866543
No 188
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.86 E-value=3.5e-09 Score=112.51 Aligned_cols=168 Identities=21% Similarity=0.290 Sum_probs=94.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee-----ecccccc-------chHHHHHhhhccCCeeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESEA-------NVREIFDKARQSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~-----~~g~se~-------~i~~if~~A~~~~p~IL~ 392 (620)
..+|||+|++||||+++|++|...+ +.+|+.++|..+... .+|.... .-...|..|. ..+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 5679999999999999999998766 468999999865321 1221110 1122344443 35999
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------CcceEEEEccCCCC-------CCCcccccCCCCC
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 456 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~~~~viVIatTn~~-------~~Ld~al~rpgRf 456 (620)
||||+.|... +...|+..++... ...++.+|++|+.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATASLL--------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCCHH--------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 9999998643 3344444443211 12357788888753 122233333 44
Q ss_pred CceeeeeCCChhHHHH----HHHHhhccC----CCC--CCcChHHHHhh-cCCCC--CCcHHHHHHHHHHHH
Q 007053 457 DQLIYIPLPDEESRLQ----IFKACLRKS----PVS--KDVDLRALAKY-TQGFS--GADITEICQRACKYA 515 (620)
Q Consensus 457 ~~~i~~~~P~~~eR~~----Il~~~l~~~----~l~--~dv~l~~LA~~-t~G~s--g~DL~~l~~~A~~~A 515 (620)
. .+.+..|...+|.+ +++.++... ... ..++-+.+... ...|. .++|++++++|+..+
T Consensus 163 ~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 A-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred c-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 3 34555565555543 555554321 111 12333333222 12343 378888888887765
No 189
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.85 E-value=5.5e-09 Score=117.14 Aligned_cols=193 Identities=22% Similarity=0.364 Sum_probs=115.1
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhh-----------hhhceeee
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISV 359 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~-----------l~~~~i~i 359 (620)
..|+++.|.....+++++.+...- ....+|||+|++||||+++|++|.+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 468889999998888888776421 23467999999999999999999987 35689999
Q ss_pred cCcceee-----eecccccc--------chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 360 KGPELLT-----MWFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 360 ~~~~l~~-----~~~g~se~--------~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
+|..+-. ..+|..+. .-..+|+.|.. ..||||||+.|... +...|+..++
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~--------------~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLP--------------LQTRLLRVLE 347 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHH--------------HHHHHHhhhh
Confidence 9987632 12232211 11235555543 38999999998643 3344444443
Q ss_pred CCC-----C----cceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhccC--CCC
Q 007053 427 GMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRKS--PVS 484 (620)
Q Consensus 427 ~~~-----~----~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~~--~l~ 484 (620)
... . ..++.+|++||.. +...+ ..|+|.. .+.+..|...+|.+ +++.+++.. ...
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 211 1 1246788888763 22222 2234432 45566776666654 555555431 011
Q ss_pred CCcChHHH--------HhhcCCCCC--CcHHHHHHHHHHH
Q 007053 485 KDVDLRAL--------AKYTQGFSG--ADITEICQRACKY 514 (620)
Q Consensus 485 ~dv~l~~L--------A~~t~G~sg--~DL~~l~~~A~~~ 514 (620)
....-+.+ +-....|.| ++|++++++++..
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 11211111 112234544 8899999988765
No 190
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.82 E-value=1e-08 Score=115.35 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=115.7
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee--
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-- 366 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~-- 366 (620)
...++.|.....+++.+.+...- ....+|||+|++||||+++|++|+..+ +.+|+.++|..+-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 45678888888888887776521 235679999999999999999999875 46899999987632
Q ss_pred ---eeccccccc-------hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-------
Q 007053 367 ---MWFGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------- 429 (620)
Q Consensus 367 ---~~~g~se~~-------i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~------- 429 (620)
..+|..... -...|+.|. ...||||||+.|... +...|+..++...
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCC
Confidence 122221110 112344443 348999999998643 3334444443211
Q ss_pred --CcceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhccCC-----CCCCcChHH
Q 007053 430 --AKKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRKSP-----VSKDVDLRA 491 (620)
Q Consensus 430 --~~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~~~-----l~~dv~l~~ 491 (620)
...++.+|++|+.. +... ...|+|.. .+.+..|...+|.+ +++++++... -...++-+.
T Consensus 317 ~~~~~~~RiI~~t~~~--l~~~-~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a 393 (509)
T PRK05022 317 RSLRVDVRVIAATNRD--LREE-VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAA 393 (509)
T ss_pred cceecceEEEEecCCC--HHHH-HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 11257888888764 1111 11223321 45566777666654 4444443221 111233333
Q ss_pred HHhh-cCCCCC--CcHHHHHHHHHHHHHHH
Q 007053 492 LAKY-TQGFSG--ADITEICQRACKYAIRE 518 (620)
Q Consensus 492 LA~~-t~G~sg--~DL~~l~~~A~~~A~~~ 518 (620)
+... ...|.| ++|++++++|+..+...
T Consensus 394 ~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~ 423 (509)
T PRK05022 394 QAALLAYDWPGNVRELEHVISRAALLARAR 423 (509)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 3322 233444 89999999998876543
No 191
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.4e-08 Score=103.89 Aligned_cols=101 Identities=26% Similarity=0.448 Sum_probs=74.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee-eeeccccccc-hHHHHHhhh----ccCCeeeeeccchhHHh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGESEAN-VREIFDKAR----QSAPCVLFFDELDSIAT 401 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-~~~~g~se~~-i~~if~~A~----~~~p~IL~iDEiD~l~~ 401 (620)
..+|||.||.|||||+||+.+|+.++.||..-++..|. ..|+|+.-++ +-++++.|. +....||||||||.++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 35799999999999999999999999999999988886 4688886554 344444432 23346999999999997
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCC
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGM 428 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~ 428 (620)
+....+-.-.-...-+...||..++|.
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 654332211223345778899999875
No 192
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.79 E-value=2.6e-08 Score=112.30 Aligned_cols=198 Identities=19% Similarity=0.266 Sum_probs=113.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
....|+++.|.....+++.+.+...- .....|||+|++||||+++|+++...+ ..+|+.++|..+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 34578889998887777766655311 124569999999999999999998765 3589999998763
Q ss_pred ee-----eccccc-------cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC-----
Q 007053 366 TM-----WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM----- 428 (620)
Q Consensus 366 ~~-----~~g~se-------~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~----- 428 (620)
.. .+|... .....+|+.|.. ..||||||+.|.+. +...|+..+...
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRV 330 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccC
Confidence 21 122211 111234555543 48999999998643 223344444321
Q ss_pred C----CcceEEEEccCCCC-C------CCcccccCCCCCCceeeeeCCChhHHHH----HHHHhhcc----CCC-CCCcC
Q 007053 429 S----AKKTVFIIGATNRP-D------IIDPALLRPGRLDQLIYIPLPDEESRLQ----IFKACLRK----SPV-SKDVD 488 (620)
Q Consensus 429 ~----~~~~viVIatTn~~-~------~Ld~al~rpgRf~~~i~~~~P~~~eR~~----Il~~~l~~----~~l-~~dv~ 488 (620)
. ...++.||++|+.+ . .+.+.|.. |+. .+.+..|...+|.+ +++.+++. ... ...+.
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 0 12356788877653 1 12223332 443 46666776666653 33444432 211 11233
Q ss_pred hHHHHhh-cCCCCC--CcHHHHHHHHHHHHHH
Q 007053 489 LRALAKY-TQGFSG--ADITEICQRACKYAIR 517 (620)
Q Consensus 489 l~~LA~~-t~G~sg--~DL~~l~~~A~~~A~~ 517 (620)
-+.+... ...|.| ++|++++.+|...+-.
T Consensus 408 ~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~~ 439 (520)
T PRK10820 408 ADLNTVLTRYGWPGNVRQLKNAIYRALTQLEG 439 (520)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3333332 233544 7888888888765543
No 193
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.2e-08 Score=99.79 Aligned_cols=83 Identities=25% Similarity=0.409 Sum_probs=60.6
Q ss_pred eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------CcceEEEEccC----CCCCCCcccccCCCCC
Q 007053 389 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 456 (620)
Q Consensus 389 ~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~~~~viVIatT----n~~~~Ld~al~rpgRf 456 (620)
.||||||||.++.+.+.+..+ ..-.-+...||-.++|.. ...++++||+. ..|..|-|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~d--vSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPD--VSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCC--cchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 499999999999765432111 222335566777777642 23578888876 57778888886 599
Q ss_pred CceeeeeCCChhHHHHHHH
Q 007053 457 DQLIYIPLPDEESRLQIFK 475 (620)
Q Consensus 457 ~~~i~~~~P~~~eR~~Il~ 475 (620)
...+++...+.++-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888874
No 194
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=7.1e-08 Score=109.82 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=115.8
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee-ecCc---cee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGP---ELL 365 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~-i~~~---~l~ 365 (620)
+..++++.|.+..+++++.++.... ++..+.+.++|+||||||||++++.+|++++..++. ++.. ...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 4578899999999999988876422 122344569999999999999999999999876654 2211 000
Q ss_pred eee------------ccccccchHHHHHhhh----------ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhh
Q 007053 366 TMW------------FGESEANVREIFDKAR----------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 423 (620)
Q Consensus 366 ~~~------------~g~se~~i~~if~~A~----------~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~ 423 (620)
..| +......++.++..+. .....||||||++.+... ..+.+..+|.
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~lLr 220 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEILR 220 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHHHH
Confidence 000 0111233445555443 134579999999987631 1123444444
Q ss_pred -hhcCCCCcceEEEEccCCCC------C-------CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC--CCCC-
Q 007053 424 -EMDGMSAKKTVFIIGATNRP------D-------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP--VSKD- 486 (620)
Q Consensus 424 -~ld~~~~~~~viVIatTn~~------~-------~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~--l~~d- 486 (620)
.... ...-.+++|.+-+.. + .|.++++...|+. +|.|.+.+.......|+..+.... ...+
T Consensus 221 ~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~ 298 (637)
T TIGR00602 221 WKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNGEKI 298 (637)
T ss_pred HHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 2211 112233333332211 1 1335666422443 799999999998888888775432 1111
Q ss_pred -----cChHHHHhhcCCCCCCcHHHHHHHHHHHHH
Q 007053 487 -----VDLRALAKYTQGFSGADITEICQRACKYAI 516 (620)
Q Consensus 487 -----v~l~~LA~~t~G~sg~DL~~l~~~A~~~A~ 516 (620)
..+..|+. .+.+|++..+..--..+.
T Consensus 299 ~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 299 KVPKKTSVELLCQ----GCSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccCCHHHHHHHHH----hCCChHHHHHHHHHHHHh
Confidence 13444554 456788877655444433
No 195
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.77 E-value=2.6e-08 Score=116.11 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=133.7
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 366 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~ 366 (620)
+..|+++.|.....+.+.+.+.... ....+|||+|++|||||++|++|+..+ +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 3467789999988888887776422 234579999999999999999999865 56899999986532
Q ss_pred -----eeccccc-------cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----
Q 007053 367 -----MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 429 (620)
Q Consensus 367 -----~~~g~se-------~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----- 429 (620)
..+|... ......|+.+. ..+||||||+.+... +...|+..++...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLG 503 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCC
Confidence 1223211 11123344443 359999999998643 3334444443211
Q ss_pred ----CcceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhccC----CCC-CCcCh
Q 007053 430 ----AKKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRKS----PVS-KDVDL 489 (620)
Q Consensus 430 ----~~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~~----~l~-~dv~l 489 (620)
...++.+|++|+..- .. +...++|.. .+.+..|...+|.+ +++.++... ... ..+.-
T Consensus 504 ~~~~~~~~~RiI~~t~~~l--~~-~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDL--KK-MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCCH--HH-HHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 123577888887641 11 111123322 45677777777765 445554332 111 11222
Q ss_pred HHHHhh-cCCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCC
Q 007053 490 RALAKY-TQGFSG--ADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS 565 (620)
Q Consensus 490 ~~LA~~-t~G~sg--~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs 565 (620)
+.+... ...|.| ++|++++++|...+-...+........ ..................+..+.+..||+....+++
T Consensus 581 ~al~~L~~y~WPGNvrEL~~~i~~a~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~Er~~I~~aL~~~~gn~~ 658 (686)
T PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIT-LPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVVA 658 (686)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhCCCCcccccCchhh-cccccccccccccccHHHHHHHHHHHHHHHcCCCcc
Confidence 222222 233544 888999988887654333322100000 000000000000011134567778888888877664
No 196
>PRK04132 replication factor C small subunit; Provisional
Probab=98.77 E-value=1.5e-08 Score=118.21 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=107.0
Q ss_pred ceeeeec--CCCChhHHHHHHHHhhh-----hhceeeecCcceeeeeccccccchHHHHHhhhcc------CCeeeeecc
Q 007053 329 KGVLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDE 395 (620)
Q Consensus 329 ~~vLL~G--ppGtGKT~LAralA~~l-----~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~------~p~IL~iDE 395 (620)
-+-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++++...+... ...|+||||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3456779 99999999999999998 55799999987422 23455555443322 236999999
Q ss_pred chhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHH
Q 007053 396 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFK 475 (620)
Q Consensus 396 iD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~ 475 (620)
+|.|.. ...+.|+..|+... ..+.+|++||.+..+.+++++ |+. .+.|++|+.++....|+
T Consensus 639 aD~Lt~--------------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 639 ADALTQ--------------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLR 699 (846)
T ss_pred cccCCH--------------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHH
Confidence 999853 24566888887533 457788889999999999987 874 89999999999999998
Q ss_pred HhhccCCCC-CCcChHHHHhhcCC
Q 007053 476 ACLRKSPVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 476 ~~l~~~~l~-~dv~l~~LA~~t~G 498 (620)
..+....+. .+..+..++..+.|
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC
Confidence 887654432 23346677776665
No 197
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.77 E-value=2.1e-08 Score=115.89 Aligned_cols=195 Identities=20% Similarity=0.274 Sum_probs=112.5
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee-
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL- 365 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~- 365 (620)
..+|+++.|.+...+++.+.+.... .....|||+|++||||+++|+++++.+ +.+|+.++|..+-
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3467888888887777776665422 224569999999999999999999876 3689999998653
Q ss_pred ----eeecccc----ccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----C--
Q 007053 366 ----TMWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A-- 430 (620)
Q Consensus 366 ----~~~~g~s----e~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----~-- 430 (620)
+.++|.. .......|+.|. ..+||||||+.|... +...|+..++.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCc
Confidence 1223321 111112343333 359999999998643 2334444443211 0
Q ss_pred --cceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHHH----HHHHhhccC----CCCCCcChH---
Q 007053 431 --KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRLQ----IFKACLRKS----PVSKDVDLR--- 490 (620)
Q Consensus 431 --~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~~----Il~~~l~~~----~l~~dv~l~--- 490 (620)
.-++.+|+||+.. +. .+...|+|.. .+.+..|...+|.+ +++.+++.. .....++-+
T Consensus 453 ~~~~~~riI~~t~~~--l~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~ 529 (638)
T PRK11388 453 LIPVDVRVIATTTAD--LA-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALA 529 (638)
T ss_pred eEEeeEEEEEeccCC--HH-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHH
Confidence 1257788888763 11 1112233321 45667777766643 445554322 111123323
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 491 ALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 491 ~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
.|.....--+.++|++++++|...+
T Consensus 530 ~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 530 RLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HHHcCCCCChHHHHHHHHHHHHHhC
Confidence 3333332223488888888877654
No 198
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.74 E-value=3.9e-08 Score=112.10 Aligned_cols=132 Identities=21% Similarity=0.290 Sum_probs=87.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCcceeeeeccccc--cch--------HHHHHhhhccCCeeeeecc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE--ANV--------REIFDKARQSAPCVLFFDE 395 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~~~~~g~se--~~i--------~~if~~A~~~~p~IL~iDE 395 (620)
-.+|||.|+||||||++|++++..+.. +|+.+.........+|... ..+ ...+.+| ...+||+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 357999999999999999999998754 5887774322222333210 000 0011112 224999999
Q ss_pred chhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEEEEccCCCCC---CCcccccCCCCCCceee
Q 007053 396 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIY 461 (620)
Q Consensus 396 iD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~viVIatTn~~~---~Ld~al~rpgRf~~~i~ 461 (620)
++.+.+ .+.+.|+..|+.-. ....+.||+|+|..+ .|.++++. ||...+.
T Consensus 93 i~rl~~--------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 93 ANLLDD--------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred hhhCCH--------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 999764 34556666664321 113578889888765 68888888 9998777
Q ss_pred ee-CCChhHHHHHHHHhh
Q 007053 462 IP-LPDEESRLQIFKACL 478 (620)
Q Consensus 462 ~~-~P~~~eR~~Il~~~l 478 (620)
+. +|+.++|.+|++.++
T Consensus 157 ~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRER 174 (589)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 65 457788999998876
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.73 E-value=5.8e-08 Score=92.71 Aligned_cols=137 Identities=24% Similarity=0.338 Sum_probs=85.4
Q ss_pred chHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee---------------ecCc
Q 007053 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---------------VKGP 362 (620)
Q Consensus 298 Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~---------------i~~~ 362 (620)
|++.+.+.|...+.. -..+..+||+||+|+||+++|.++|+.+-..-.. -..+
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 667788888877764 1346779999999999999999999877321111 1123
Q ss_pred ceeeeeccc-----cccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcce
Q 007053 363 ELLTMWFGE-----SEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 433 (620)
Q Consensus 363 ~l~~~~~g~-----se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~ 433 (620)
++.--.... .-..++.+...+.. +..-|++||++|.|. ....+.||..|+... .+
T Consensus 69 d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHSTT--TT
T ss_pred ceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCCC--CC
Confidence 332111111 12345555555433 345799999999976 346788999998543 45
Q ss_pred EEEEccCCCCCCCcccccCCCCCCceeeeeCC
Q 007053 434 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465 (620)
Q Consensus 434 viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P 465 (620)
+++|.+|+.++.|.|.+++ |+. .+.|++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred EEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 6777788888999999998 874 6666653
No 200
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.7e-08 Score=103.47 Aligned_cols=101 Identities=28% Similarity=0.465 Sum_probs=73.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee-eeecccc-ccchHHHHHhhhc----cCCeeeeeccchhHHh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKARQ----SAPCVLFFDELDSIAT 401 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-~~~~g~s-e~~i~~if~~A~~----~~p~IL~iDEiD~l~~ 401 (620)
..+|||.||+|+|||+||+.||+-++.||...+|..|. ..|+|+. +..+.+++..|.. ....|+||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 35799999999999999999999999999999999886 4688875 3445666665532 3346999999999985
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCC
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGM 428 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~ 428 (620)
+.......-.-...-+...||.++++.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccchhHHHHHHHHhccc
Confidence 432211111122345778888888763
No 201
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=3.5e-07 Score=98.11 Aligned_cols=203 Identities=23% Similarity=0.295 Sum_probs=130.6
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-----hceeeecCcceee--
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLT-- 366 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~~~l~~-- 366 (620)
..+.|-+..+..+++++..++. .+.+..+.+.|.||||||.+...+..... ...++++|.+|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4467889999999999887553 35578899999999999999887665442 2457888876431
Q ss_pred --------ee----cc-ccccchHHHHHh-hhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCc
Q 007053 367 --------MW----FG-ESEANVREIFDK-ARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK 431 (620)
Q Consensus 367 --------~~----~g-~se~~i~~if~~-A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~ 431 (620)
.+ .+ ..+......|+. ..+. .+-+|++||+|.|....+. ++..+..+ .. .++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-----------vLy~lFew-p~-lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-----------VLYTLFEW-PK-LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-----------eeeeehhc-cc-CCc
Confidence 11 11 111122223322 2223 3679999999999843221 23333222 22 235
Q ss_pred ceEEEEccCCCCCCCcccccC----CCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc--ChHHHHhhcCCCCC--Cc
Q 007053 432 KTVFIIGATNRPDIIDPALLR----PGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV--DLRALAKYTQGFSG--AD 503 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~r----pgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv--~l~~LA~~t~G~sg--~D 503 (620)
.++++|+.+|..+.-|..|-| .+--...+.|++++.++..+||+..+...+..... .++-.|++..|.|| +.
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRk 367 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRK 367 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHH
Confidence 678889999988764433322 12234689999999999999999999877655443 36677888888776 23
Q ss_pred HHHHHHHHHHHHHHH
Q 007053 504 ITEICQRACKYAIRE 518 (620)
Q Consensus 504 L~~l~~~A~~~A~~~ 518 (620)
.-.+|++|...+..+
T Consensus 368 aLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIE 382 (529)
T ss_pred HHHHHHHHHHHHHHH
Confidence 335567766665544
No 202
>PRK08116 hypothetical protein; Validated
Probab=98.65 E-value=1.8e-08 Score=104.09 Aligned_cols=69 Identities=33% Similarity=0.469 Sum_probs=47.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeec----cccccchHHHHHhhhccCCeeeeeccchh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~----g~se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
..+++|+|++|||||+||.++++++ +.+++.++.++++..+. +........+++.... ..+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccC
Confidence 4579999999999999999999986 56778888777654321 1111223334443332 35999999854
No 203
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=5.9e-08 Score=103.15 Aligned_cols=133 Identities=18% Similarity=0.244 Sum_probs=91.9
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhcee-----------------eecCcceeeeec-------------------
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFI-----------------SVKGPELLTMWF------------------- 369 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i-----------------~i~~~~l~~~~~------------------- 369 (620)
..++.+||+||+|+||+++|+++|+.+.+..- .-+.+++.--..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45788999999999999999999988744220 001122211000
Q ss_pred ---c---------ccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcce
Q 007053 370 ---G---------ESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 433 (620)
Q Consensus 370 ---g---------~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~ 433 (620)
| -.-..++.+.+.+. .+...|++||++|.+.. ...|.||..|+. +..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--------------AAANALLKTLEE--PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH--------------HHHHHHHHHhcC--CCcC
Confidence 0 01123444444332 23346999999998752 346789999884 4556
Q ss_pred EEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHh
Q 007053 434 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 477 (620)
Q Consensus 434 viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~ 477 (620)
+++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 7888889999999999998 88 48999999999999888764
No 204
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.3e-07 Score=99.98 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce----------------eeecCc
Q 007053 299 LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF----------------ISVKGP 362 (620)
Q Consensus 299 l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~----------------i~i~~~ 362 (620)
+....+.|...+.. -..++.+||+||+|+||+++|+++|+.+-+.- ..-+.+
T Consensus 7 ~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45556666665543 12467899999999999999999998774311 001123
Q ss_pred ceeeeec--cc--cccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceE
Q 007053 363 ELLTMWF--GE--SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 434 (620)
Q Consensus 363 ~l~~~~~--g~--se~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~v 434 (620)
++..-.. +. .-..+|++-+.+ ..+...|++||++|.+.. ...+.||..|+. +..++
T Consensus 75 D~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~--------------~AaNaLLKtLEE--Pp~~~ 138 (325)
T PRK06871 75 DFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE--------------AAANALLKTLEE--PRPNT 138 (325)
T ss_pred CEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCe
Confidence 3321111 11 123455544443 234456999999999852 356789999985 34456
Q ss_pred EEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHh
Q 007053 435 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 477 (620)
Q Consensus 435 iVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~ 477 (620)
++|.+|+.++.|.|.+++ |+. .+.|++|+.++..+.|...
T Consensus 139 ~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 139 YFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 777788889999999988 885 8899999999988888764
No 205
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.62 E-value=1.1e-07 Score=98.04 Aligned_cols=207 Identities=17% Similarity=0.254 Sum_probs=117.2
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---------hhceeeec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVK 360 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---------~~~~i~i~ 360 (620)
.-.|=.-..-..+.+.|.+.+..|-. ....++||+|++|.|||++++.+++.. ..+++.+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~----------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq 102 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR----------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ 102 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc----------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe
Confidence 33564444455666666666666532 234679999999999999999999754 23566666
Q ss_pred Cccee--------------eee-cccc-ccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhh
Q 007053 361 GPELL--------------TMW-FGES-EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 424 (620)
Q Consensus 361 ~~~l~--------------~~~-~g~s-e~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ 424 (620)
++.-- ..+ ...+ ......+....+...+-+|+|||++.+..... ...+.+++. |..
T Consensus 103 ~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-------~~qr~~Ln~-LK~ 174 (302)
T PF05621_consen 103 MPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-------RKQREFLNA-LKF 174 (302)
T ss_pred cCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-------HHHHHHHHH-HHH
Confidence 54221 011 0011 11122333444556677999999999863211 112223332 233
Q ss_pred hcCCCCcceEEEEccCCCCC--CCcccccCCCCCCceeeeeCCC-hhHHHHHHHHhhccCCCCCCc--ChHHHH----hh
Q 007053 425 MDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPLPD-EESRLQIFKACLRKSPVSKDV--DLRALA----KY 495 (620)
Q Consensus 425 ld~~~~~~~viVIatTn~~~--~Ld~al~rpgRf~~~i~~~~P~-~~eR~~Il~~~l~~~~l~~dv--~l~~LA----~~ 495 (620)
+.. .-.-.++.+||-.-.. .-|+.+.+ ||. .+.+|.-. .++-..++..+-+..|+...- .-..++ ..
T Consensus 175 L~N-eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~ 250 (302)
T PF05621_consen 175 LGN-ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHER 250 (302)
T ss_pred Hhh-ccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Confidence 311 1122455555542222 23667766 997 45555432 345566777777777765332 333444 45
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHH
Q 007053 496 TQGFSGADITEICQRACKYAIREN 519 (620)
Q Consensus 496 t~G~sg~DL~~l~~~A~~~A~~~~ 519 (620)
+.|. -++|..|+..|+..|++..
T Consensus 251 s~G~-iG~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 251 SEGL-IGELSRLLNAAAIAAIRSG 273 (302)
T ss_pred cCCc-hHHHHHHHHHHHHHHHhcC
Confidence 5554 4678889999999998764
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.59 E-value=3e-07 Score=97.58 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=47.5
Q ss_pred cc-cccchHHHHHHHHHhhcCcCCChhhhhhcCCC-CCceeeeecCCCChhHHHHHHHHhhhhh-------ceeeecC
Q 007053 293 WE-DIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG 361 (620)
Q Consensus 293 ~~-di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~-~~~~vLL~GppGtGKT~LAralA~~l~~-------~~i~i~~ 361 (620)
|+ ++.|+++++.++.+++..... |.. ..+.++|+||||||||+||++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 44 899999999999887765331 222 3467899999999999999999999865 6666655
No 207
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.58 E-value=3.2e-07 Score=102.08 Aligned_cols=143 Identities=27% Similarity=0.387 Sum_probs=85.4
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh----------ceeeecC
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------NFISVKG 361 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~----------~~i~i~~ 361 (620)
.+.++.|...+++.+. + ......+++|.||||||||++++.++..+.. .+.++.+
T Consensus 189 d~~~v~Gq~~~~~al~----l-----------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE----I-----------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhh----e-----------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 5666777766665542 1 1234578999999999999999999976521 1111111
Q ss_pred c-----ce-----ee--------eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhh
Q 007053 362 P-----EL-----LT--------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 423 (620)
Q Consensus 362 ~-----~l-----~~--------~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~ 423 (620)
. .+ .+ ..+|.....-...+..|... +||+||++.+. ..+++.|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~--------------~~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFE--------------RRTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCC--------------HHHHHHHHH
Confidence 0 00 00 01111111112344555444 99999997754 235566666
Q ss_pred hhcCCC-----------CcceEEEEccCCCCC---------------------CCcccccCCCCCCceeeeeCCChh
Q 007053 424 EMDGMS-----------AKKTVFIIGATNRPD---------------------IIDPALLRPGRLDQLIYIPLPDEE 468 (620)
Q Consensus 424 ~ld~~~-----------~~~~viVIatTn~~~---------------------~Ld~al~rpgRf~~~i~~~~P~~~ 468 (620)
.|+.-. -..++.+|+|+|... .|..+++. |||..+.++.|+.+
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 553221 123688999998752 36667777 99999999988654
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2e-07 Score=99.12 Aligned_cols=132 Identities=20% Similarity=0.281 Sum_probs=91.7
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhc----------------eeeecCcceeeeeccc-----cccchHHHHHhh-
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQAN----------------FISVKGPELLTMWFGE-----SEANVREIFDKA- 383 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~----------------~i~i~~~~l~~~~~g~-----se~~i~~if~~A- 383 (620)
..++.+||+||+|+||+++|.++|..+-+. +..-+-+++..-.... .-..+|++-+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 346789999999999999999999877331 1111223432211111 122345544433
Q ss_pred ---hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCcee
Q 007053 384 ---RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 460 (620)
Q Consensus 384 ---~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i 460 (620)
..+...|++||++|.|.. ...|.||+.|+. +..+.++|.+|+.++.|.|.+++ |+. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTD--------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 334457999999999863 356789999985 34567777788889999999998 887 68
Q ss_pred eeeCCChhHHHHHHHH
Q 007053 461 YIPLPDEESRLQIFKA 476 (620)
Q Consensus 461 ~~~~P~~~eR~~Il~~ 476 (620)
.|++|+.++..+.|..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 163 YLAPPPEQYALTWLSR 178 (334)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999999888887754
No 209
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=98.57 E-value=1.3e-07 Score=75.90 Aligned_cols=59 Identities=36% Similarity=0.557 Sum_probs=52.4
Q ss_pred cchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCCceeecCCceEeeCCCcc
Q 007053 133 GNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPV 194 (620)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~~~~~~~~t~~~~~~~~~ 194 (620)
+++.+ |++++|. ++||.+||.|.+...++.+.|+|+++.|.++|+|+++|.|.+..+|.
T Consensus 4 ~d~~~-~~~~~l~--~~pv~~Gd~i~~~~~~~~~~~~V~~~~P~~~v~it~~T~i~i~~~p~ 62 (64)
T PF02933_consen 4 GDFMA-YFKRQLE--GRPVTKGDTIVFPFFGQALPFKVVSTEPSGPVIITEDTEIEIKEEPV 62 (64)
T ss_dssp SHHHH-HHHHHHT--TEEEETT-EEEEEETTEEEEEEEEEECSSSEEEEETTSEEEESSTTB
T ss_pred ccHHH-HHHHHHc--CCCccCCCEEEEEeCCcEEEEEEEEEEcCCCEEECCCcEEEEccccc
Confidence 34455 9999997 69999999999999999999999999999999999999999987765
No 210
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.57 E-value=2.3e-07 Score=105.91 Aligned_cols=52 Identities=31% Similarity=0.534 Sum_probs=44.9
Q ss_pred eeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 286 ~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
..+|+..|+++.|.++++..|...+.. .++++|+||||||||++++++++.+
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 566788999999999999988876663 2479999999999999999999866
No 211
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.55 E-value=9.2e-08 Score=95.13 Aligned_cols=179 Identities=22% Similarity=0.355 Sum_probs=93.7
Q ss_pred cchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh---ceeeecCccee--------
Q 007053 297 GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELL-------- 365 (620)
Q Consensus 297 ~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~---~~i~i~~~~l~-------- 365 (620)
.|-+...+.|.+.+.. .+...++|+||+|+|||+|++.+.+.+.- ..+++......
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 3556666666665542 23577999999999999999999988722 22222211000
Q ss_pred --------------ee-------------eccccccchHHHHHhhhcc-CCeeeeeccchhHH-hhcCCCCCCCCCchhH
Q 007053 366 --------------TM-------------WFGESEANVREIFDKARQS-APCVLFFDELDSIA-TQRGSSVGDAGGAADR 416 (620)
Q Consensus 366 --------------~~-------------~~g~se~~i~~if~~A~~~-~p~IL~iDEiD~l~-~~r~~~~~~~~~~~~r 416 (620)
.. ........+..++...... ...||+|||++.+. ... ....
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~ 139 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKD 139 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHH
Confidence 00 0011233455566555543 34899999999997 211 2244
Q ss_pred HHHHHhhhhcCCCCcceE-EEEccCCCC---C--CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC-C-CCCcC
Q 007053 417 VLNQLLTEMDGMSAKKTV-FIIGATNRP---D--IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-V-SKDVD 488 (620)
Q Consensus 417 vl~~LL~~ld~~~~~~~v-iVIatTn~~---~--~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~-l-~~dv~ 488 (620)
++..|...++......++ +|+++++.. + .-...+. +|+.. +.+++.+.++..++++..++... + ..+.+
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T PF01637_consen 140 FLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDED 216 (234)
T ss_dssp HHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHH
T ss_pred HHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHH
Confidence 566666666653333333 333333310 0 1112222 47776 99999999999999999876651 1 14556
Q ss_pred hHHHHhhcCCCC
Q 007053 489 LRALAKYTQGFS 500 (620)
Q Consensus 489 l~~LA~~t~G~s 500 (620)
++.+...+.|..
T Consensus 217 ~~~i~~~~gG~P 228 (234)
T PF01637_consen 217 IEEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHHTT-H
T ss_pred HHHHHHHhCCCH
Confidence 778888887763
No 212
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3.2e-07 Score=96.76 Aligned_cols=168 Identities=21% Similarity=0.260 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-------------eeecCccee
Q 007053 299 LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------------ISVKGPELL 365 (620)
Q Consensus 299 l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-------------i~i~~~~l~ 365 (620)
+..+.++|...+.. -..++.+||+||+|+||+++|.++|+.+-+.- ..-+.+++.
T Consensus 9 ~~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 45566666666553 13467899999999999999999998763310 011123332
Q ss_pred ee--ec---cc------cccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC
Q 007053 366 TM--WF---GE------SEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 430 (620)
Q Consensus 366 ~~--~~---g~------se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~ 430 (620)
-- .. |. .-..++++.+.+.. +...|++||++|.|.. ...|.||..|+.-
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~--------------~AaNaLLKtLEEP-- 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR--------------AACNALLKTLEEP-- 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH--------------HHHHHHHHHhhCC--
Confidence 11 00 10 12234555544332 2346999999999852 3467888888854
Q ss_pred cceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCC
Q 007053 431 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGA 502 (620)
Q Consensus 431 ~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~ 502 (620)
..++++|.+|+.++.|.|.+++ |+. .+.|++|+.++..+.|... ... ..+...++..+.|-.+.
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGL 204 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHH
Confidence 3456666778888899999998 885 7899999998888777643 121 11233556666654443
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=4.7e-07 Score=95.45 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce---------------eeecCcc
Q 007053 299 LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF---------------ISVKGPE 363 (620)
Q Consensus 299 l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~---------------i~i~~~~ 363 (620)
+....++|...+.. -..++.+||+||.|+||+++|+++|..+-+.- ..-+.++
T Consensus 8 l~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 56666777666543 13467899999999999999999998763210 0112234
Q ss_pred eeeeecc---c--cccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceE
Q 007053 364 LLTMWFG---E--SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 434 (620)
Q Consensus 364 l~~~~~g---~--se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~v 434 (620)
+..-... . .-..+|.+-+.+. .+...|++||++|.+.. ...|.||..++.- ..++
T Consensus 76 ~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------------~AaNaLLKtLEEP--p~~t 139 (319)
T PRK06090 76 LHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE--------------SASNALLKTLEEP--APNC 139 (319)
T ss_pred EEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH--------------HHHHHHHHHhcCC--CCCe
Confidence 3221111 1 1123455443332 23346999999999852 3467899988853 4457
Q ss_pred EEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHH
Q 007053 435 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 435 iVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~ 476 (620)
++|..|+.++.|.|.+++ |+. .+.|++|+.++..+.|..
T Consensus 140 ~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 777788889999999988 886 889999999988888765
No 214
>PF13173 AAA_14: AAA domain
Probab=98.48 E-value=3.8e-07 Score=83.43 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=47.7
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh--hceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
+.++|+||+|||||++++.+++.+. .+++++++.+.......... +.+.+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 5689999999999999999998876 77888887664321111101 2333333222356799999998873
No 215
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.48 E-value=4.6e-06 Score=89.16 Aligned_cols=161 Identities=24% Similarity=0.391 Sum_probs=101.7
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecC--------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 361 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~-------- 361 (620)
++.|.-+.|.+..+..|--.... +.-.++||.|+.|||||+++|+|+..+.---+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 35577788988888776433222 235789999999999999999999987211110011
Q ss_pred c------------------------ceeeeeccccccc------hHHHHHh----------hhccCCeeeeeccchhHHh
Q 007053 362 P------------------------ELLTMWFGESEAN------VREIFDK----------ARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 362 ~------------------------~l~~~~~g~se~~------i~~if~~----------A~~~~p~IL~iDEiD~l~~ 401 (620)
+ .++..-.+.++.. +.+..+. |+ ....|||+||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL~- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLLD- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEecccccc-
Confidence 0 0111112222221 1111111 11 122599999998775
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcC---------C--CCcceEEEEccCCCCC-CCcccccCCCCCCceeeeeCC-Chh
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDG---------M--SAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEE 468 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~---------~--~~~~~viVIatTn~~~-~Ld~al~rpgRf~~~i~~~~P-~~~ 468 (620)
+.+++.||+.+.. + ...-++++|+|+|.-+ .|-|.|+. ||...+.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 4567777776643 1 1223689999999653 57788887 99999998766 679
Q ss_pred HHHHHHHHhhcc
Q 007053 469 SRLQIFKACLRK 480 (620)
Q Consensus 469 eR~~Il~~~l~~ 480 (620)
+|.+|.++.+..
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 216
>PRK08181 transposase; Validated
Probab=98.47 E-value=9.3e-08 Score=98.54 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=50.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeecc-ccccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g-~se~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
..+++|+||||||||+||.++++++ |..+++++.++++..... .......+.+.... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 5689999999999999999999765 556777777777654321 11223444454433 45699999998754
No 217
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.47 E-value=1.8e-07 Score=103.45 Aligned_cols=193 Identities=22% Similarity=0.245 Sum_probs=105.9
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee---
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM--- 367 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~--- 367 (620)
..+.|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~ 207 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE 207 (445)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH
Confidence 34555555555555544321 1234669999999999999999998876 458999999876322
Q ss_pred --ecccccc-------chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------C
Q 007053 368 --WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------A 430 (620)
Q Consensus 368 --~~g~se~-------~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~ 430 (620)
.+|.... .....|..| ...+|||||++.|... +...|+..++... .
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 208 SELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLN--------------LQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred HHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHH--------------HHHHHHHHHhhCeEEeCCCCce
Confidence 1221110 011123333 2459999999998643 3334444443211 0
Q ss_pred -cceEEEEccCCCCC-------CCcccccCCCCCCceeeeeCCChhHHHH----HHHHhhccC----CCC-CCcC---hH
Q 007053 431 -KKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLPDEESRLQ----IFKACLRKS----PVS-KDVD---LR 490 (620)
Q Consensus 431 -~~~viVIatTn~~~-------~Ld~al~rpgRf~~~i~~~~P~~~eR~~----Il~~~l~~~----~l~-~dv~---l~ 490 (620)
..++.+|+||+..- .+.+.|.. |+. .+.+..|...+|.+ +++.+++.. ... ..++ +.
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 347 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALR 347 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 12567787876541 12222222 332 35566777777765 444444332 111 1233 33
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 007053 491 ALAKYTQGFSGADITEICQRACKYAIR 517 (620)
Q Consensus 491 ~LA~~t~G~sg~DL~~l~~~A~~~A~~ 517 (620)
.|.....--+.++|++++++|+..+-.
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 333333223348888999888865543
No 218
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.42 E-value=1.2e-07 Score=87.88 Aligned_cols=60 Identities=32% Similarity=0.551 Sum_probs=44.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh---ceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~---~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~ 401 (620)
...|||+|++||||+++|++++...+. +|+.++|..+- .++++.+ ....|||+|+|.|..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH
Confidence 567999999999999999999987754 56666665421 4566666 345999999999874
No 219
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=1.9e-06 Score=96.45 Aligned_cols=201 Identities=17% Similarity=0.231 Sum_probs=110.7
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee------
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------ 365 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~------ 365 (620)
+.+|+.-..+-.++++.++...+ .+..+.+-+||+||||||||++++.||++++..+.+-..+...
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 44566666666667777766422 1223455788999999999999999999999887765433221
Q ss_pred -eeeccccc------c---chHHH-HHhhhc-----------cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhh
Q 007053 366 -TMWFGESE------A---NVREI-FDKARQ-----------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 423 (620)
Q Consensus 366 -~~~~g~se------~---~i~~i-f~~A~~-----------~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~ 423 (620)
..+.+... . ....+ +..++. ..+.||+|+|+-.+... ...++-+.|..
T Consensus 89 ~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~ 158 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQ 158 (519)
T ss_pred cccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch----------hHHHHHHHHHH
Confidence 01111100 0 11111 111111 24679999998755421 11333333433
Q ss_pred hhcCCCCcceEEEEccC-------CCC--------CCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC-------
Q 007053 424 EMDGMSAKKTVFIIGAT-------NRP--------DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS------- 481 (620)
Q Consensus 424 ~ld~~~~~~~viVIatT-------n~~--------~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~------- 481 (620)
.+..-... ++++|.|- |.. ..+++.++...++ ..|.|.+-...-.+..|+..+...
T Consensus 159 ~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~ 236 (519)
T PF03215_consen 159 YLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGK 236 (519)
T ss_pred HHHcCCCC-CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 34322211 56666661 111 1345555542233 478898888877777777766433
Q ss_pred -CCCCCcC-hHHHHhhcCCCCCCcHHHHHHHHHHHHH
Q 007053 482 -PVSKDVD-LRALAKYTQGFSGADITEICQRACKYAI 516 (620)
Q Consensus 482 -~l~~dv~-l~~LA~~t~G~sg~DL~~l~~~A~~~A~ 516 (620)
....... ++.|++.+ .+||+..+..-.+.+.
T Consensus 237 ~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 237 NKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred ccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 1111122 55666554 5699988877766666
No 220
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.40 E-value=3.1e-07 Score=94.30 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=101.4
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc------eeeecCcc
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPE 363 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------~i~i~~~~ 363 (620)
+-...++.+.+++...+.++... ..-+++|+|||||||||+...+.|+.+..+ +..+++++
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 34567778888888877776332 233489999999999999999999987552 22333333
Q ss_pred eeeeeccccccchHHHHHhhhc-------cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEE
Q 007053 364 LLTMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 436 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~-------~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viV 436 (620)
-.+. ...+.-.+.|..++. ..+.++++||+|.+...-+ .+.+| .+..+.. ++.+
T Consensus 104 ~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-------nALRR-------viek~t~--n~rF 164 (360)
T KOG0990|consen 104 DRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-------NALRR-------VIEKYTA--NTRF 164 (360)
T ss_pred ccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-------HHHHH-------HHHHhcc--ceEE
Confidence 2111 111222344555542 3678999999999874321 23344 3333333 3444
Q ss_pred EccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCC
Q 007053 437 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV 483 (620)
Q Consensus 437 IatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l 483 (620)
+..+|.+..+.|++++ ||. .+.|.+.+...-...+.+++...++
T Consensus 165 ~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 165 ATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 4567999999999987 776 5667777777777777777654443
No 221
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.39 E-value=4.2e-06 Score=84.48 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=108.8
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh---ceeeecCcc-----
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPE----- 363 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~---~~i~i~~~~----- 363 (620)
+++.+.+.++....|+..... ..-.++|+|||+|+||-|.+.++.+++-. .=+.+....
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 344466677777777655441 11357999999999999999999988721 101111000
Q ss_pred ---e-----eee--------ecccccc-chHHHHHhhhccCC---------eeeeeccchhHHhhcCCCCCCCCCchhHH
Q 007053 364 ---L-----LTM--------WFGESEA-NVREIFDKARQSAP---------CVLFFDELDSIATQRGSSVGDAGGAADRV 417 (620)
Q Consensus 364 ---l-----~~~--------~~g~se~-~i~~if~~A~~~~p---------~IL~iDEiD~l~~~r~~~~~~~~~~~~rv 417 (620)
+ .+. -.|...+ .+.++++...+..| .+++|.|+|.|....
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA-------------- 143 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA-------------- 143 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH--------------
Confidence 0 011 1222222 24555555444332 599999999987432
Q ss_pred HHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhc
Q 007053 418 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYT 496 (620)
Q Consensus 418 l~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t 496 (620)
...|-..|+... +++.+|..+|....+-+++++ |+- .+.+|.|+.++...++...+.+..+.-.. -+..+|+.+
T Consensus 144 Q~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 144 QHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 233444444333 345666678888888889987 763 78999999999999999998776654332 245566665
Q ss_pred CC
Q 007053 497 QG 498 (620)
Q Consensus 497 ~G 498 (620)
.|
T Consensus 219 ~~ 220 (351)
T KOG2035|consen 219 NR 220 (351)
T ss_pred cc
Confidence 44
No 222
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.39 E-value=4.9e-07 Score=100.73 Aligned_cols=194 Identities=24% Similarity=0.310 Sum_probs=107.9
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee--
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 367 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~-- 367 (620)
+.++.|-....+.+.+.+.... .....+||+|++|||||++|++++..+ +.+|+.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 3456666666666655544211 234569999999999999999999876 468999999876321
Q ss_pred ---eccccccc-------hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------
Q 007053 368 ---WFGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 429 (620)
Q Consensus 368 ---~~g~se~~-------i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-------- 429 (620)
.+|..... ....|..+. ...|||||++.|... +...|+..++...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQAD---GGTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEEEeccccCCHH--------------HHHHHHHHHhcCcEEeCCCCC
Confidence 12221110 011233332 348999999998643 2334444443211
Q ss_pred -CcceEEEEccCCCCC-------CCcccccCCCCCCceeeeeCCChhHHHH----HHHHhhccC----CCC-CCcC---h
Q 007053 430 -AKKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLPDEESRLQ----IFKACLRKS----PVS-KDVD---L 489 (620)
Q Consensus 430 -~~~~viVIatTn~~~-------~Ld~al~rpgRf~~~i~~~~P~~~eR~~----Il~~~l~~~----~l~-~dv~---l 489 (620)
...++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.+ +++.+++.. ... ..++ +
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 123567888886531 22333333 442 35566666555554 555555332 111 1122 3
Q ss_pred HHHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 007053 490 RALAKYTQGFSGADITEICQRACKYAIR 517 (620)
Q Consensus 490 ~~LA~~t~G~sg~DL~~l~~~A~~~A~~ 517 (620)
..|.....--+.++|++++++|...+-.
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~~~~ 373 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVMAAG 373 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 3333333223348899999888876543
No 223
>PRK06526 transposase; Provisional
Probab=98.38 E-value=1.7e-07 Score=96.06 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=47.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeecc-ccccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g-~se~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
...+++|+||||||||+||.+++.++ |..+..+++++++..... .....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 35789999999999999999999876 455555555555433211 1112233333332 345799999998764
No 224
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.9e-07 Score=99.52 Aligned_cols=48 Identities=33% Similarity=0.588 Sum_probs=41.3
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
...|.||.|++..|+.+...... .+++||+||||||||+||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 34788999999999999877664 6889999999999999999887654
No 225
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=6.3e-07 Score=95.01 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=87.4
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhcee-----------------eecCcceeeeec-------c-----ccccch
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFI-----------------SVKGPELLTMWF-------G-----ESEANV 376 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i-----------------~i~~~~l~~~~~-------g-----~se~~i 376 (620)
..++.+||+||+|+|||++|+.+|+.+.+.-- .-+.+++..-.. | -.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34678999999999999999999987643100 001123221110 1 012345
Q ss_pred HHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccC
Q 007053 377 REIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR 452 (620)
Q Consensus 377 ~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~r 452 (620)
|++.+.+.. +...|+++|+++.+.. ...+.|+..++.... ...+|.+|+.++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH
Confidence 666655543 3346999999998753 245667777766542 35566688888889999887
Q ss_pred CCCCCceeeeeCCChhHHHHHHHH
Q 007053 453 PGRLDQLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 453 pgRf~~~i~~~~P~~~eR~~Il~~ 476 (620)
|+. .+.|++|+.++..+.|+.
T Consensus 163 --Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hhh-hhcCCCCCHHHHHHHHHh
Confidence 774 888999999988887764
No 226
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-06 Score=101.85 Aligned_cols=127 Identities=26% Similarity=0.384 Sum_probs=87.9
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCC-CCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee-----
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----- 365 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~-~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~----- 365 (620)
.|.|++++...+-+.+..+-.. ++. .+.-.+||.||.|+|||-||+++|..+ .-.|+.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 3667777777777776653211 111 356679999999999999999999987 3478999988632
Q ss_pred ----eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------Ccc
Q 007053 366 ----TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKK 432 (620)
Q Consensus 366 ----~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~~~ 432 (620)
..|+|..+ ..++.+..++.+.+||+|||||.- ...+++.|+..+|... ..+
T Consensus 637 igsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA--------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 637 IGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA--------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred cCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc--------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 22444433 236666667777799999999873 3446676777776432 235
Q ss_pred eEEEEccCCCC
Q 007053 433 TVFIIGATNRP 443 (620)
Q Consensus 433 ~viVIatTn~~ 443 (620)
+++||+|+|.-
T Consensus 701 N~I~IMTsn~~ 711 (898)
T KOG1051|consen 701 NAIFIMTSNVG 711 (898)
T ss_pred ceEEEEecccc
Confidence 78999998863
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.34 E-value=4.3e-07 Score=93.06 Aligned_cols=71 Identities=25% Similarity=0.469 Sum_probs=49.1
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccccc-cchH-HHHHhhhccCCeeeeeccchhH
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESE-ANVR-EIFDKARQSAPCVLFFDELDSI 399 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~se-~~i~-~if~~A~~~~p~IL~iDEiD~l 399 (620)
...+++|+||||+|||+||-|+++++ |..++.+..++++...-.... .... ++..... ...+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 46899999999999999999999987 567888888888754322111 1111 1222122 2359999999764
No 228
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.34 E-value=8.9e-07 Score=98.19 Aligned_cols=168 Identities=26% Similarity=0.405 Sum_probs=93.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee-----eccccccc-------hHHHHHhhhccCCeeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESEAN-------VREIFDKARQSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~-----~~g~se~~-------i~~if~~A~~~~p~IL~ 392 (620)
...+|++|++||||+++|+++...+ +.+|+.++|..+... .+|..... ....|..|. ..+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERAN---EGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECC---CCEEE
Confidence 4579999999999999999998765 468999999876321 12211110 112233332 35999
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----C----cceEEEEccCCCCCCCcccccCCCCCCc-----
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ----- 458 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----~----~~~viVIatTn~~~~Ld~al~rpgRf~~----- 458 (620)
|||++.|... +...|+..++... . ..++.+|+||+.. +. .+.+.|+|..
T Consensus 243 ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--l~-~~~~~g~~~~~l~~~ 305 (457)
T PRK11361 243 LDEIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD--LQ-AMVKEGTFREDLFYR 305 (457)
T ss_pred EechhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC--HH-HHHHcCCchHHHHHH
Confidence 9999998743 2334444443211 1 1247788888753 11 2222334432
Q ss_pred --eeeeeCCChhHHHH----HHHHhhccCCC----C-CCcChH---HHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 459 --LIYIPLPDEESRLQ----IFKACLRKSPV----S-KDVDLR---ALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 459 --~i~~~~P~~~eR~~----Il~~~l~~~~l----~-~dv~l~---~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
.+.+..|...+|.+ +.+.++..... . ..++-+ .|.....--+.++|++++++|...+
T Consensus 306 l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 45567777776654 44444432211 1 122323 3333322223478888888877654
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.34 E-value=2e-07 Score=98.86 Aligned_cols=70 Identities=29% Similarity=0.488 Sum_probs=47.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeecc---ccccchHHHHHhhhccCCeeeeeccchhH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSI 399 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g---~se~~i~~if~~A~~~~p~IL~iDEiD~l 399 (620)
..+++|+||+|||||+|+.++|+++ +..+++++.++++..... .........+.... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999987 567778887777543311 01111111233333 3369999999764
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=98.32 E-value=3.6e-07 Score=93.98 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=48.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeecc-ccccchHHHHHhhhccCCeeeeeccchhH
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 399 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g-~se~~i~~if~~A~~~~p~IL~iDEiD~l 399 (620)
...+++|+||||||||+|+.+++... |..+..+++.++...+.. .....+..+|... ...+.+++|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 45789999999999999999998764 556666666666533211 1122344555543 235679999999765
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.31 E-value=3.7e-07 Score=95.99 Aligned_cols=70 Identities=31% Similarity=0.480 Sum_probs=48.5
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccc-cccchHHHHHhhhccCCeeeeeccchh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~-se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
..+|++|+||+|||||+|+.|+|+++ |..+..+..++++...... ....+...++... ...+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 35799999999999999999999988 5666777777665432111 1112344444443 335999999965
No 232
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=1.4e-06 Score=79.26 Aligned_cols=99 Identities=24% Similarity=0.393 Sum_probs=57.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh--------hhceeeecCcceee----------e----ecc-ccccc-hHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLT----------M----WFG-ESEAN-VREIFDKA 383 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l--------~~~~i~i~~~~l~~----------~----~~g-~se~~-i~~if~~A 383 (620)
.+.++++||||+|||++++.+++.+ ..+++.++++...+ . ... .+... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999987 45666666543320 0 000 11122 22333333
Q ss_pred hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 384 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 384 ~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
......+|+|||+|.+. + ..+++.|...++ ...-.++++++.+
T Consensus 84 ~~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred HhcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 33434599999999975 1 345666666665 3344566666553
No 233
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.31 E-value=1.4e-06 Score=96.80 Aligned_cols=193 Identities=21% Similarity=0.312 Sum_probs=104.2
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee----
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM---- 367 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~---- 367 (620)
.+.|.....+++.+.+... ......+++.|.+||||+++|+++.... +.+|+.++|..+...
T Consensus 135 ~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 4566666666655544431 1224579999999999999999999775 468999999876321
Q ss_pred -eccccccch-------HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------C
Q 007053 368 -WFGESEANV-------REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------A 430 (620)
Q Consensus 368 -~~g~se~~i-------~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~ 430 (620)
.+|...... ...|.. .....|||||++.|... +...|+..++... .
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCCcee
Confidence 122211110 111222 23468999999998643 2333444443211 1
Q ss_pred cceEEEEccCCCCC-------CCcccccCCCCCC-ceeeeeCCC--hhHHHHHHHHhhccCCC----C-CCcChHHHHhh
Q 007053 431 KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPD--EESRLQIFKACLRKSPV----S-KDVDLRALAKY 495 (620)
Q Consensus 431 ~~~viVIatTn~~~-------~Ld~al~rpgRf~-~~i~~~~P~--~~eR~~Il~~~l~~~~l----~-~dv~l~~LA~~ 495 (620)
..++.+|++|+..- .+.+.|.. |+. ..|++|+.. .++...+++.+++.... . ..++-+.+...
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 267 KVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 12567777776531 12222222 332 244444444 34444566655533211 0 12333333222
Q ss_pred -cCCCCC--CcHHHHHHHHHHHHHH
Q 007053 496 -TQGFSG--ADITEICQRACKYAIR 517 (620)
Q Consensus 496 -t~G~sg--~DL~~l~~~A~~~A~~ 517 (620)
..+|.| ++|++++++|+..+-.
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCCC
Confidence 234544 8899999998876644
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.30 E-value=2.4e-07 Score=89.85 Aligned_cols=70 Identities=31% Similarity=0.546 Sum_probs=46.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccc-cccchHHHHHhhhccCCeeeeeccchh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~-se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
...+++|+||+|||||+||.++++++ +..+..++.++|+...... ......+.+..... ..+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 36789999999999999999999876 6677788878776443211 11223344444433 35999999864
No 235
>PRK12377 putative replication protein; Provisional
Probab=98.29 E-value=4.3e-07 Score=92.55 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=46.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccc--cccchHHHHHhhhccCCeeeeeccchhH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSI 399 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~--se~~i~~if~~A~~~~p~IL~iDEiD~l 399 (620)
..+++|+||||||||+||.++|+++ +..++.++.++++...... .......+++... ...+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999987 4556677766665432110 0111223343332 3469999999664
No 236
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=98.26 E-value=6.1e-06 Score=79.22 Aligned_cols=137 Identities=22% Similarity=0.316 Sum_probs=93.3
Q ss_pred CCceEEeChhhHhhhcccC---CCeEEEecc-cccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEeecCCCCC
Q 007053 40 DNSVVVLHPDTMEKLQFFR---GDTILIKGK-KRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKY 115 (620)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~---gd~v~i~g~-~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~ 115 (620)
..+-+.+.++.+.+|.-.. -=+-+|+.. ..+.|.|-|..- ....|.|.|..-+++||++..||.|.|+- ..+|.
T Consensus 24 ~gdKiiLP~s~L~~L~~~~~~~P~~F~i~n~~~~~~th~GVlEF-sA~eG~i~lP~wmm~~L~l~~g~~V~v~~-~~LPk 101 (176)
T PF03152_consen 24 YGDKIILPPSALDELSRLNIPYPMLFEISNPDNGKRTHCGVLEF-SAEEGTIYLPPWMMQNLGLQEGDIVRVEY-VSLPK 101 (176)
T ss_dssp CTTEEEE-HHHHHHHHHTT--SS-EEEEEETTTTEEEEEEEEEE---CTTEEEE-CHHHHHHT--TTEEEEEEE-EE---
T ss_pred CCCeEEcCHHHHHHHHhccCCCCEEEEEecCCCCcEEEEEEEEe-EcCCCeEEeCccHHhhcCCCCCCEEEEEE-eECCC
Confidence 3456789999988875311 124566654 233577766532 22468999999999999999999999997 79999
Q ss_pred cceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCCceee
Q 007053 116 GKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVV 181 (620)
Q Consensus 116 a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~~~~~ 181 (620)
|+.|.+.|.+...-.+ ......|...|+ +...+++||+|.|...++...|.|.++.|++.|.|
T Consensus 102 gt~vkLqP~~~~F~~i--~n~KavLE~~Lr-~ystLT~Gd~I~i~~~~~~y~l~V~e~kP~~aV~I 164 (176)
T PF03152_consen 102 GTFVKLQPQSSDFLDI--SNPKAVLERALR-NYSTLTKGDTISIEYNNKTYELDVVEVKPENAVSI 164 (176)
T ss_dssp -SEEEEEESCHHHHCS--S-HHHHHHHHHC-C-SEEETTSEEEEECTTEEEEEEEEEECSSSCEE-
T ss_pred CCEEEEeECCCccccc--cchHHHHHhhcc-cCceeecCCEEEEEeCCEEEEEEEEEEcCCCEEEE
Confidence 9999999986543222 233566777776 47789999999999999999999999999886544
No 237
>PRK06921 hypothetical protein; Provisional
Probab=98.25 E-value=4.4e-07 Score=93.65 Aligned_cols=69 Identities=25% Similarity=0.254 Sum_probs=43.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh----hhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
...+++|+||||+|||+|+.++|+++ +..++++...+++...... .......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35789999999999999999999976 4456666655544321110 01112222222 2346999999943
No 238
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-06 Score=91.05 Aligned_cols=45 Identities=44% Similarity=0.632 Sum_probs=40.5
Q ss_pred hhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCC
Q 007053 216 IAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSN 277 (620)
Q Consensus 216 lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ 277 (620)
||+.|.||+||||++.|+||.|.|+|+. ...|+++||..|..++.
T Consensus 349 la~~~~g~sGAdlkaictEAGm~AiR~~-----------------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 349 LARLTEGFSGADLKAICTEAGMFAIRER-----------------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHhcCCCchHHHHHHHHHHhHHHHHhc-----------------cCeecHHHHHHHHHHHH
Confidence 8999999999999999999999999964 34689999999988764
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.24 E-value=7.2e-07 Score=90.67 Aligned_cols=69 Identities=25% Similarity=0.412 Sum_probs=49.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeecc---ccccchHHHHHhhhccCCeeeeeccchhH
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSI 399 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g---~se~~i~~if~~A~~~~p~IL~iDEiD~l 399 (620)
.+++|+|+||||||+|+.++|+++ +..++.++.++++..... ........+++... ...+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 589999999999999999999988 556777777776643221 11222334555443 4579999999774
No 240
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.24 E-value=2.9e-06 Score=93.60 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=91.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeee-----ccccccc-------hHHHHHhhhccCCeeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESEAN-------VREIFDKARQSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~-----~g~se~~-------i~~if~~A~~~~p~IL~ 392 (620)
...++++|.+||||+++|+++.... +.+|+.++|..+.... +|..... ....|.. ....+||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE---ADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeE---CCCCEEE
Confidence 4679999999999999999998765 4689999998753221 1211110 0111222 2356999
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----C----cceEEEEccCCCCCCCcccccCCCCCCc-----
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ----- 458 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----~----~~~viVIatTn~~~~Ld~al~rpgRf~~----- 458 (620)
||||+.|... ....|+..++... . ..++.+|++|+..- . ....+|+|..
T Consensus 239 ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~ 301 (441)
T PRK10365 239 LDEIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYR 301 (441)
T ss_pred EeccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHH
Confidence 9999998753 2233444443211 0 12456777776531 1 2223345532
Q ss_pred --eeeeeCCChhHHHH----HHHHhhccCC----C-CCCcChHHHHhh-cCCCC--CCcHHHHHHHHHHHH
Q 007053 459 --LIYIPLPDEESRLQ----IFKACLRKSP----V-SKDVDLRALAKY-TQGFS--GADITEICQRACKYA 515 (620)
Q Consensus 459 --~i~~~~P~~~eR~~----Il~~~l~~~~----l-~~dv~l~~LA~~-t~G~s--g~DL~~l~~~A~~~A 515 (620)
.+.+..|...+|.+ +++.++.... . ...++-+.+... ...|. .++|.+++++|...+
T Consensus 302 l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred hccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 45566666666544 5555553311 1 011222222222 12343 377777777766543
No 241
>PF05729 NACHT: NACHT domain
Probab=98.21 E-value=3.9e-06 Score=78.92 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=73.3
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhc---------eeeecCcceeee------------eccccccchHHH-HHhhhccC
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQAN---------FISVKGPELLTM------------WFGESEANVREI-FDKARQSA 387 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~---------~i~i~~~~l~~~------------~~g~se~~i~~i-f~~A~~~~ 387 (620)
-++|+|+||+|||++++.++..+... ++.+.+.+.... ........+... ........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48899999999999999999876321 122222222110 000111111111 12223455
Q ss_pred CeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC-CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCC
Q 007053 388 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 466 (620)
Q Consensus 388 p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~-~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~ 466 (620)
+.+|+||.+|.+...... .........+...+.. ..+..+++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 679999999998753221 0111222222233332 2223333333222222122222222 1578999999
Q ss_pred hhHHHHHHHHhhcc
Q 007053 467 EESRLQIFKACLRK 480 (620)
Q Consensus 467 ~~eR~~Il~~~l~~ 480 (620)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
No 242
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.19 E-value=4.6e-06 Score=97.40 Aligned_cols=160 Identities=21% Similarity=0.177 Sum_probs=88.9
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhh--------hcCCCCCceeeeecCCCChhHHHHHHHHhhhh-------hceeeec
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFE--------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVK 360 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~--------~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-------~~~i~i~ 360 (620)
|.|.+.+|+.|.-.+-........+. ...+....+|||.|+||||||.+|+++++... .++..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 67889998887544433221110000 01234455899999999999999999998642 2333333
Q ss_pred Ccceeeeeccccccch---HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------
Q 007053 361 GPELLTMWFGESEANV---REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 429 (620)
Q Consensus 361 ~~~l~~~~~g~se~~i---~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-------- 429 (620)
+..... +........ ...+..| ...+++|||++.+... ....|+..|+.-.
T Consensus 532 LTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~~--------------~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 532 LTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHNE--------------SRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred ccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhCCHH--------------HHHHHHHHHhCCEEEEecCCc
Confidence 322211 000000000 0111222 2359999999997532 2344555553221
Q ss_pred ---CcceEEEEccCCCCC-------------CCcccccCCCCCCceee-eeCCChhHHHHHHH
Q 007053 430 ---AKKTVFIIGATNRPD-------------IIDPALLRPGRLDQLIY-IPLPDEESRLQIFK 475 (620)
Q Consensus 430 ---~~~~viVIatTn~~~-------------~Ld~al~rpgRf~~~i~-~~~P~~~eR~~Il~ 475 (620)
-..++.||||+|... .|++++++ |||.++. ++.|+.+.=..|-+
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHH
Confidence 124688999998742 37788988 9996654 45666554444433
No 243
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.18 E-value=5.9e-06 Score=83.87 Aligned_cols=37 Identities=46% Similarity=0.718 Sum_probs=29.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh--hceeeecCcc
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE 363 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~ 363 (620)
..+.+||.||||||||.||-+++.++| .||..+.+++
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSE 101 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSE 101 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchh
Confidence 468899999999999999999999995 3555444443
No 244
>PRK15115 response regulator GlrR; Provisional
Probab=98.18 E-value=2.4e-06 Score=94.46 Aligned_cols=217 Identities=19% Similarity=0.312 Sum_probs=113.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeee-----cccccc-------chHHHHHhhhccCCeeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESEA-------NVREIFDKARQSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~-----~g~se~-------~i~~if~~A~~~~p~IL~ 392 (620)
...++|+|++|||||++|+++.+.. +.+|+.++|..+.... +|.... .....|..+. ..+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE---GGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECC---CCEEE
Confidence 3569999999999999999999875 4689999998763211 111111 1111233332 35999
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------CcceEEEEccCCCCCCCcccccCCCCCCc-----
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPDIIDPALLRPGRLDQ----- 458 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~~~~viVIatTn~~~~Ld~al~rpgRf~~----- 458 (620)
|||+|.|... ....|+..++... ...++.+|+||+.. +...+.+ |+|..
T Consensus 234 l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~ 296 (444)
T PRK15115 234 LDEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYR 296 (444)
T ss_pred EEccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHh
Confidence 9999998743 2333444443211 11267888888753 3333332 45521
Q ss_pred --eeeeeCCChhHHHH----HHHHhhccCCC-----CCCcC---hHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 459 --LIYIPLPDEESRLQ----IFKACLRKSPV-----SKDVD---LRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 459 --~i~~~~P~~~eR~~----Il~~~l~~~~l-----~~dv~---l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.+.+..|...+|.+ +++.+++.... ...++ +..|.....--+.++|++++++|+..+-...+....
T Consensus 297 l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~~ 376 (444)
T PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDAL 376 (444)
T ss_pred hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCccChhh
Confidence 45566777777754 44555433210 01122 334444433334478888888877654332222211
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCCh
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSD 566 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~ 566 (620)
....... . .............+..+.+..||+....+.+.
T Consensus 377 l~~~~~~-~-~~~~~~~~~~~~~~E~~~i~~al~~~~gn~~~ 416 (444)
T PRK15115 377 VEQALEG-E-NTALPTFVEARNQFELNYLRKLLQITKGNVTH 416 (444)
T ss_pred hhhhhcc-c-ccccccHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 1000000 0 00000000112345677778888887766543
No 245
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.13 E-value=1.7e-06 Score=92.98 Aligned_cols=142 Identities=23% Similarity=0.398 Sum_probs=81.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhh------ceeee--cCcceeeeeccccccchHHHHHhhhccCCeeeeeccc
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISV--KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 396 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~------~~i~i--~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEi 396 (620)
..+++|++||||+|+|||+|...+...+.. +|... ....-+..+.+ ....+..+.+..... -.+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG-QDDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhC-CCccHHHHHHHHHhc-CCEEEEeee
Confidence 457899999999999999999999887643 22111 00000111111 112233333333222 249999999
Q ss_pred hhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHH
Q 007053 397 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 397 D~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~ 476 (620)
+.-- ..-.-++..|+..+- ..++++|+|+|++ +..|.. +.+.+..++| -..+|+.
T Consensus 137 ~V~D-----------iaDAmil~rLf~~l~----~~gvvlVaTSN~~---P~~Ly~-~gl~r~~Flp------~I~~l~~ 191 (362)
T PF03969_consen 137 QVTD-----------IADAMILKRLFEALF----KRGVVLVATSNRP---PEDLYK-NGLQRERFLP------FIDLLKR 191 (362)
T ss_pred eccc-----------hhHHHHHHHHHHHHH----HCCCEEEecCCCC---hHHHcC-CcccHHHHHH------HHHHHHh
Confidence 7521 122335566666653 3578999999975 333332 3344333333 2567777
Q ss_pred hhccCCCCCCcChHHHH
Q 007053 477 CLRKSPVSKDVDLRALA 493 (620)
Q Consensus 477 ~l~~~~l~~dv~l~~LA 493 (620)
++.-..+...+|.....
T Consensus 192 ~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 192 RCDVVELDGGVDYRRRG 208 (362)
T ss_pred ceEEEEecCCCchhhhc
Confidence 77777777777776644
No 246
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.09 E-value=1.5e-05 Score=90.63 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=80.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCcceeeeecccc--ccc--------hHHHHHhhhccCCeeeeeccc
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES--EAN--------VREIFDKARQSAPCVLFFDEL 396 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~~~~~g~s--e~~--------i~~if~~A~~~~p~IL~iDEi 396 (620)
.||||.|++||+|++++++++..+.. +|..+..+--....+|.. +.. -..++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 68999999999999999999998743 776554332222233332 111 1222333332 49999999
Q ss_pred hhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEEEEccCCCC---CCCcccccCCCCCCceeee
Q 007053 397 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYI 462 (620)
Q Consensus 397 D~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~viVIatTn~~---~~Ld~al~rpgRf~~~i~~ 462 (620)
..+. ..+++.|+..|+.-. -..++++|++-|.. ..|.++++. ||+..+.+
T Consensus 103 n~~~--------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERLE--------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccCC--------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 7754 457788888876421 11357788874432 348888888 99999999
Q ss_pred eCCChhH
Q 007053 463 PLPDEES 469 (620)
Q Consensus 463 ~~P~~~e 469 (620)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.08 E-value=8.8e-06 Score=76.00 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=59.1
Q ss_pred eeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee-------------------ecccc-ccch----HHHHHhh
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-------------------WFGES-EANV----REIFDKA 383 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~-------------------~~g~s-e~~i----~~if~~A 383 (620)
++|+||||+|||+++..++... +.+++.++....... +.... .... +..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 345555544322110 00000 1111 1223445
Q ss_pred hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 384 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 384 ~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
....|.+|+|||+..+................+.+..++..+.. .++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecC
Confidence 56678899999999987543210001112333445555544432 244455555443
No 248
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.06 E-value=2.8e-05 Score=95.87 Aligned_cols=176 Identities=19% Similarity=0.307 Sum_probs=98.5
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce---eeecCcce--
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISVKGPEL-- 364 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~---i~i~~~~l-- 364 (620)
...+++++|++...+++.+++.. .....+.+-|+|++|+||||||+++++.+..+| +.++...+
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 34577899999999999888753 223456789999999999999999998775443 11111000
Q ss_pred -eeeecc----cc-------ccchH-------------HHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHH
Q 007053 365 -LTMWFG----ES-------EANVR-------------EIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 419 (620)
Q Consensus 365 -~~~~~g----~s-------e~~i~-------------~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~ 419 (620)
...+.. .. ...+. ...+.....++.+|+||+++... .+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~----------------~l~ 312 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD----------------VLD 312 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH----------------HHH
Confidence 000000 00 00001 11122223456799999986421 233
Q ss_pred HHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcCh----HHHHhh
Q 007053 420 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDL----RALAKY 495 (620)
Q Consensus 420 ~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l----~~LA~~ 495 (620)
.+....+.... + ..||.||..... .+....+.++.++.|+.++..++|..+.-..... ..++ .++++.
T Consensus 313 ~L~~~~~~~~~-G-srIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 313 ALAGQTQWFGS-G-SRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALR 384 (1153)
T ss_pred HHHhhCccCCC-C-cEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHH
Confidence 33333322222 2 234446664332 2222467789999999999999998876332211 1122 345566
Q ss_pred cCCCC
Q 007053 496 TQGFS 500 (620)
Q Consensus 496 t~G~s 500 (620)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 66653
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.06 E-value=5.8e-05 Score=82.77 Aligned_cols=173 Identities=17% Similarity=0.199 Sum_probs=92.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee-------ee------eccccccchHHHHHhhh----------
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TM------WFGESEANVREIFDKAR---------- 384 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~-------~~------~~g~se~~i~~if~~A~---------- 384 (620)
.+-+||+||+||||||.++.|++++|..++.-..+-.. +. ++...-.....+...+.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~ 189 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGD 189 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccc
Confidence 45689999999999999999999999888765532211 11 11111111222333331
Q ss_pred --ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccC------CCCC
Q 007053 385 --QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR------PGRL 456 (620)
Q Consensus 385 --~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~r------pgRf 456 (620)
...|.+|++||+-..+... ..+.+...|.++-......-|++|.-++.++..++..+. ..|+
T Consensus 190 ~~~~~~~liLveDLPn~~~~d----------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 190 DLRTDKKLILVEDLPNQFYRD----------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred ccccCceEEEeeccchhhhhh----------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 1346699999987765321 122333333333322222233333333333433332221 1244
Q ss_pred CceeeeeCCChhHHHHHHHHhhccCCC--CC-----CcChHHHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 457 DQLIYIPLPDEESRLQIFKACLRKSPV--SK-----DVDLRALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 457 ~~~i~~~~P~~~eR~~Il~~~l~~~~l--~~-----dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
. .|.|.+-...-.+..|+.+++.... .. ...++.++.. +++||+..+..-.+.+
T Consensus 260 ~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 260 S-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred c-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 3 6788888888888888877754322 11 1223333333 3668887766555553
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.02 E-value=1.5e-06 Score=90.06 Aligned_cols=140 Identities=24% Similarity=0.414 Sum_probs=76.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh-c--eeeecCcceeeeeccccccchHHHHHh-----------hhccCCeeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA-N--FISVKGPELLTMWFGESEANVREIFDK-----------ARQSAPCVLF 392 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~-~--~i~i~~~~l~~~~~g~se~~i~~if~~-----------A~~~~p~IL~ 392 (620)
..+++||+||+|||||++++..-..+.- . ...++++... +...+.++.+. ...++.+|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 3678999999999999999987766532 2 2223332110 11111111111 1123457999
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhh---cC--C--CCcceEEEEccCCCCC---CCcccccCCCCCCceeee
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEM---DG--M--SAKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYI 462 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l---d~--~--~~~~~viVIatTn~~~---~Ld~al~rpgRf~~~i~~ 462 (620)
|||+..-.+..-. ....-+++.|+++.= |. + ..-.++.++||++... .+++.+.| .|. ++.+
T Consensus 106 iDDlN~p~~d~yg-----tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYG-----TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNI 177 (272)
T ss_dssp EETTT-S---TTS-------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE-
T ss_pred ecccCCCCCCCCC-----CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEe
Confidence 9999875433211 112234555554431 11 1 1113577888877532 47788886 564 8999
Q ss_pred eCCChhHHHHHHHHhhcc
Q 007053 463 PLPDEESRLQIFKACLRK 480 (620)
Q Consensus 463 ~~P~~~eR~~Il~~~l~~ 480 (620)
+.|+.+....|+..++..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999999998887643
No 251
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.9e-06 Score=87.47 Aligned_cols=72 Identities=31% Similarity=0.484 Sum_probs=55.7
Q ss_pred cccchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCcccc-HHHHhhhccChHHHHHhhccCCcccc
Q 007053 209 DVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETID-AEILNSMAVTDEHFKTALGTSNPSAL 281 (620)
Q Consensus 209 ~ig~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~-~~~l~~~~v~~~df~~al~~~~ps~~ 281 (620)
+--.++.||+.+.||+|+||..+|++|+|+++||.+..+........ .+.+. ..|+++||..|++++.||..
T Consensus 402 ~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 402 DPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred CCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCC
Confidence 33445669999999999999999999999999998876544332222 22222 66999999999999999864
No 252
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.00 E-value=2.8e-05 Score=80.52 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=77.7
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh--hhce---eeecCcce------ee---eecc---------ccccchHHHHHh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC--QANF---ISVKGPEL------LT---MWFG---------ESEANVREIFDK 382 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l--~~~~---i~i~~~~l------~~---~~~g---------~se~~i~~if~~ 382 (620)
...+.|.|+|++|+|||+||+.+++.. ...| +.++...- .. ...+ .........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 456779999999999999999999873 2222 12221110 00 0000 011112233333
Q ss_pred hhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeee
Q 007053 383 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 462 (620)
Q Consensus 383 A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~ 462 (620)
.....+++|+||+++... .+..+...+... ..+..||.||.... +-.... .....+.+
T Consensus 97 ~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~-v~~~~~---~~~~~~~l 154 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRS-VAGSLG---GTDKVIEL 154 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGG-GGTTHH---SCEEEEEC
T ss_pred hhccccceeeeeeecccc----------------cccccccccccc--cccccccccccccc-cccccc---cccccccc
Confidence 334558999999987643 122222222111 11334455665432 211111 11468999
Q ss_pred eCCChhHHHHHHHHhhccCC----CCCCcChHHHHhhcCCC
Q 007053 463 PLPDEESRLQIFKACLRKSP----VSKDVDLRALAKYTQGF 499 (620)
Q Consensus 463 ~~P~~~eR~~Il~~~l~~~~----l~~dv~l~~LA~~t~G~ 499 (620)
+..+.++-.++|+....... ...+.....+++.+.|.
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998864433 11122246788888765
No 253
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.97 E-value=2.1e-05 Score=69.66 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=38.0
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
|.|+||||+|||++|+.|++.+...+-.-....+... . .-.+.| .....+ .++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~---~---~~~~~w-~gY~~q-~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTR---N---PGDKFW-DGYQGQ-PVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeC---C---Cccchh-hccCCC-cEEEEeecCccc
Confidence 6799999999999999999888654422212222111 1 111233 333344 489999987654
No 254
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.95 E-value=6.8e-05 Score=76.60 Aligned_cols=42 Identities=31% Similarity=0.594 Sum_probs=34.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCccee
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL 365 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~ 365 (620)
|.-..+.+|+.|+||||||.+|-.+++.+|. ||..+.+++++
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~ 105 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIY 105 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceee
Confidence 3345788999999999999999999999864 67777766654
No 255
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=2.9e-05 Score=80.62 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=78.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhc--------eeeecCcceeeeec-cc----cccchHHHHHhhh----ccCCe
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQAN--------FISVKGPELLTMWF-GE----SEANVREIFDKAR----QSAPC 389 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~--------~i~i~~~~l~~~~~-g~----se~~i~~if~~A~----~~~p~ 389 (620)
-++.+||+||+|+||+.+|.++|..+-+. +-.-..+++..-.. +. .-..++++.+.+. .+...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 46789999999999999999999877431 00112244321111 11 1223444444433 23346
Q ss_pred eeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCC
Q 007053 390 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465 (620)
Q Consensus 390 IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P 465 (620)
|++||++|.+.. ...+.||..|+. +..++++|..|+.++.|.|.+++ |+. .+.|+++
T Consensus 98 v~ii~~ad~mt~--------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMTL--------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred EEEEechhhcCH--------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 999999999863 346778888885 34456777777788899999988 875 6667655
No 256
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.94 E-value=1e-05 Score=85.52 Aligned_cols=82 Identities=32% Similarity=0.503 Sum_probs=54.2
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh--hceeeecCcceeeeecc
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFG 370 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~l~~~~~g 370 (620)
.+.++|+.++++..--.+.. + +.+.-..+++||.||||||||.||-++|+++| .||+.++++++++.-+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-I-------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-I-------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-H-------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHHH-H-------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 45678888888876544432 1 11334578999999999999999999999996 79999999999765433
Q ss_pred ccccchHHHHHhh
Q 007053 371 ESEANVREIFDKA 383 (620)
Q Consensus 371 ~se~~i~~if~~A 383 (620)
.+| .+.+.|+++
T Consensus 95 KTE-~L~qa~Rra 106 (398)
T PF06068_consen 95 KTE-ALTQAFRRA 106 (398)
T ss_dssp HHH-HHHHHHHCS
T ss_pred chH-HHHHHHHHh
Confidence 332 355556655
No 257
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.87 E-value=2.2e-05 Score=81.44 Aligned_cols=161 Identities=25% Similarity=0.441 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHh---hhhhceeeecCccee------
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN---ECQANFISVKGPELL------ 365 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~---~l~~~~i~i~~~~l~------ 365 (620)
.+.|..+..+.+.+++..-..+ .....+++.||.|+|||++...... +.+-+|+.+.....+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3678888888888887764433 2367899999999999997664433 455566554322111
Q ss_pred ---------------eeeccccccchHHHHHhhhc-----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 366 ---------------TMWFGESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 366 ---------------~~~~g~se~~i~~if~~A~~-----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
.+.+|....++..++..... +.+.|.++||||.+++... ..++..|+..-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r----------QtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR----------QTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh----------hHHHHHHHHHH
Confidence 23344444555555444332 2244666889999875321 11333333322
Q ss_pred cCCCCcceEEEEccCCCCCCC---cccccCCCCCCce-eeeeCC-ChhHHHHHHHHhh
Q 007053 426 DGMSAKKTVFIIGATNRPDII---DPALLRPGRLDQL-IYIPLP-DEESRLQIFKACL 478 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~~~L---d~al~rpgRf~~~-i~~~~P-~~~eR~~Il~~~l 478 (620)
. ....++.||+.|.+.+.+ ...+.+ ||... |+++++ ...+-..+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 224579999999888754 456665 89754 665544 5777788888776
No 258
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.84 E-value=5.4e-05 Score=79.04 Aligned_cols=200 Identities=21% Similarity=0.309 Sum_probs=113.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
+...|+.+.+.....+.+.+.... +.. ....+||.|..||||-++|++....+ ..+|+.++|..+-
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k-------~Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK-------LAM----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH-------hhc----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 344566666666555555433221 111 12459999999999999999988765 5789999998764
Q ss_pred -----eeeccccc--cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------
Q 007053 366 -----TMWFGESE--ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------- 429 (620)
Q Consensus 366 -----~~~~g~se--~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------- 429 (620)
+..+|... +.-..+|+.|... .+|+|||..+.+ ++...||..+....
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp--------------~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP--------------RLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH--------------HHHHHHHHHhcCCceeecCCcce
Confidence 23333333 4456788888766 899999977654 34555666653221
Q ss_pred CcceEEEEccCCCC--CCCcccccCCC---CCCceeeeeCCChhHHHH----HHHHh----hccCCCC-CCcChHHHHhh
Q 007053 430 AKKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEESRLQ----IFKAC----LRKSPVS-KDVDLRALAKY 495 (620)
Q Consensus 430 ~~~~viVIatTn~~--~~Ld~al~rpg---Rf~~~i~~~~P~~~eR~~----Il~~~----l~~~~l~-~dv~l~~LA~~ 495 (620)
-.-+|.||+||..+ +.....-.|.. |+. ++.+..|...+|.+ +.+.+ ....... ...+-+.+-..
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 12368999999654 12222211111 222 56666776666643 22322 2332221 12222222222
Q ss_pred c-CCCCC--CcHHHHHHHHHHHHHH
Q 007053 496 T-QGFSG--ADITEICQRACKYAIR 517 (620)
Q Consensus 496 t-~G~sg--~DL~~l~~~A~~~A~~ 517 (620)
+ .+|.| ++|.+.+-+|+.....
T Consensus 410 ~~y~WpGNVRqL~N~iyRA~s~~Eg 434 (511)
T COG3283 410 TRYAWPGNVRQLKNAIYRALTLLEG 434 (511)
T ss_pred HHcCCCccHHHHHHHHHHHHHHhcc
Confidence 1 23544 7888888887765543
No 259
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.84 E-value=1.8e-05 Score=82.82 Aligned_cols=138 Identities=22% Similarity=0.373 Sum_probs=75.1
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhhce-eeecCccee-------eeeccccccchHHHHHhhhccCCeeeeeccc
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQANF-ISVKGPELL-------TMWFGESEANVREIFDKARQSAPCVLFFDEL 396 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-i~i~~~~l~-------~~~~g~se~~i~~if~~A~~~~p~IL~iDEi 396 (620)
..+++|+.|||+-|+|||+|.......+-.+- ..+.-..++ ....|++ .-+..+-...... -.||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~~-~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAAE-TRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHhc-CCEEEeeee
Confidence 35789999999999999999998887663211 111101111 1112333 2222222221111 249999998
Q ss_pred hhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC-CCCcccccCCCCCCceeeeeCCChhHHHHHHH
Q 007053 397 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPDEESRLQIFK 475 (620)
Q Consensus 397 D~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~-~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~ 475 (620)
+.= +. .-.-++..|+..|- ..+|++++|+|.+ +.|-+ +++.+.-++| -.++++
T Consensus 140 ~Vt---------DI--~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~-----dGlqR~~FLP------~I~li~ 193 (367)
T COG1485 140 EVT---------DI--ADAMILGRLLEALF----ARGVVLVATSNTAPDNLYK-----DGLQRERFLP------AIDLIK 193 (367)
T ss_pred eec---------Ch--HHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcc-----cchhHHhhHH------HHHHHH
Confidence 651 11 11224566666553 3478899999864 33322 3444333343 256777
Q ss_pred HhhccCCCCCCcChH
Q 007053 476 ACLRKSPVSKDVDLR 490 (620)
Q Consensus 476 ~~l~~~~l~~dv~l~ 490 (620)
.++.-..++...|..
T Consensus 194 ~~~~v~~vD~~~DYR 208 (367)
T COG1485 194 SHFEVVNVDGPVDYR 208 (367)
T ss_pred HheEEEEecCCcccc
Confidence 777666666555543
No 260
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.84 E-value=2.4e-05 Score=77.44 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=51.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee--------ec---------------cccccchH
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM--------WF---------------GESEANVR 377 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~--------~~---------------g~se~~i~ 377 (620)
|++...-++|+||||||||+++..++... +...++++..++... +. .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 67778889999999999999999988654 445677766541100 00 00011133
Q ss_pred HHHHhhhccCCeeeeeccchhHHh
Q 007053 378 EIFDKARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 378 ~if~~A~~~~p~IL~iDEiD~l~~ 401 (620)
.+...+....+++|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 333444455789999999999864
No 261
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.80 E-value=4.7e-05 Score=80.28 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee----------------eeeccccccchHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----------------TMWFGESEANVREIFDKAR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~----------------~~~~g~se~~i~~if~~A~ 384 (620)
|+++...++|+||||||||+||-.++.+. +..++++++.+.. -......+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777889999999999999988776554 4456666543321 1111112223333333345
Q ss_pred ccCCeeeeeccchhHHhhcCCC--CCC-CCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 385 QSAPCVLFFDELDSIATQRGSS--VGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~--~~~-~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
...+.+|+||-+..+.+...-. .++ ......|.+++++..|.......++.+|.|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678999999999998642111 011 11233466666666665554455666666654
No 262
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0002 Score=74.54 Aligned_cols=128 Identities=17% Similarity=0.249 Sum_probs=81.2
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhce----------------eeecCcceeeeec-cc--cccchHHHHHhhhc-
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANF----------------ISVKGPELLTMWF-GE--SEANVREIFDKARQ- 385 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~----------------i~i~~~~l~~~~~-g~--se~~i~~if~~A~~- 385 (620)
..++.+||+|| +||+++|+++|..+-+.- ..-+.+++..-.. |. .-..+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34678999996 689999999998663210 0112234321111 11 12345555444432
Q ss_pred ---cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeee
Q 007053 386 ---SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 462 (620)
Q Consensus 386 ---~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~ 462 (620)
+...|++||++|.+.. ...|.||..++.- ..+.++|.+|+.++.|.|.+++ |+. .+.|
T Consensus 100 p~~~~~kV~II~~ad~m~~--------------~AaNaLLKtLEEP--p~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV--------------NAANSLLKVIEEP--QSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcCH--------------HHHHHHHHHhcCC--CCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 3347999999999853 3467889988853 3456777788888999999998 885 7777
Q ss_pred eCCChhHHHHHHH
Q 007053 463 PLPDEESRLQIFK 475 (620)
Q Consensus 463 ~~P~~~eR~~Il~ 475 (620)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 5555555554
No 263
>PLN03086 PRLI-interacting factor K; Provisional
Probab=97.78 E-value=0.00043 Score=77.57 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=111.5
Q ss_pred eEeccccCC--CCceEEeChhhHhhhccc----CC-CeEEEecc------------cccceEEEEecCCCCCCCceeeeH
Q 007053 31 LVVDEAIND--DNSVVVLHPDTMEKLQFF----RG-DTILIKGK------------KRKDTVCIALADDTCEEPKIRMNK 91 (620)
Q Consensus 31 ~~v~~~~~~--~~~~~~~~~~~~~~l~~~----~g-d~v~i~g~------------~~~~~~~~~~~~~~~~~~~i~~~~ 91 (620)
+.+-++... ..+-+-|.|+++.+|--. +| =+-+|... ..+.|.|-|.-- ....|.|+|..
T Consensus 79 ~~~~~~~~~~~~GdKI~LPpSaL~~L~~~~~~~~~Pm~F~l~~~~~~~~~~~~~~~~~~~th~GVlEF-~A~EG~v~lP~ 157 (567)
T PLN03086 79 SRIFEAVSFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFRLSVVHQEGSGEMKDTDSQKTTHSGVLEF-TAEEGSVGLPP 157 (567)
T ss_pred EEEeeccccCCCCCeEEcCHHHHHHHHhcCCCCCCCeEEEEeccccccccccccccCCcEEEEEEEEE-EcCCCeEEcCH
Confidence 444455442 445688999999876432 11 13345531 233677776521 22568999999
Q ss_pred hhhccccccc---CCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEE
Q 007053 92 VVRSNLRVRL---GDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 168 (620)
Q Consensus 92 ~~r~n~~~~~---gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~ 168 (620)
-+++|||+.. |+.|+|+- ..+|.++-|.|.|...+.-.+ ......|..+|++ .-.++.||+|.|......+.|
T Consensus 158 wm~~~L~~~~~~~~~~v~v~~-~~Lpkgt~vklqP~~~~f~di--~npKavLE~~Lr~-~stLT~Gd~i~i~~~~~~y~~ 233 (567)
T PLN03086 158 HVWSNLFPSDPPDVPLVEVRY-IWLPKGTYAKLQPDGVGFSDL--PNHKAVLETALRQ-HATLSEDDVLVVNYGQLTYKL 233 (567)
T ss_pred HHHhhcCCCCCCCCCeEEEEE-eecCCCCEEEEeeccCCcCCc--ccHHHHHHHHhhc-CccccCCCEEEEecCCEEEEE
Confidence 9999999864 88999998 699999999999987654222 3346777777874 678999999999988889999
Q ss_pred EEEEeCCCC-ceeecCCceEeeC
Q 007053 169 KVIETDPPE-YCVVAPDTEIFCE 190 (620)
Q Consensus 169 ~v~~~~p~~-~~~~~~~t~~~~~ 190 (620)
.|..+.|+. .++|..|-++.+.
T Consensus 234 ~V~ev~P~~aVsiieTDi~VDf~ 256 (567)
T PLN03086 234 KVLELKPASSVSVLETDIEVDIV 256 (567)
T ss_pred EEEEEcCCCeeEEEeCceEEEec
Confidence 999999985 5567666666664
No 264
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=7.1e-05 Score=76.28 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhc--------------eeeecCcceeeeeccc---cccchHHHHHhhh----
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------FISVKGPELLTMWFGE---SEANVREIFDKAR---- 384 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~--------------~i~i~~~~l~~~~~g~---se~~i~~if~~A~---- 384 (620)
.+++.+||+||+|+||..+|.++|..+-+. +..-..+++.--+... .-..++++.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999876221 1111223433211111 1123444433322
Q ss_pred c-cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeee
Q 007053 385 Q-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 463 (620)
Q Consensus 385 ~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~ 463 (620)
. +...|++|+++|.+.. ...+.||..++. +..+.++|..|+.++.+.|.+++ |+. .+.++
T Consensus 85 e~~~~KV~II~~ae~m~~--------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK--------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhCH--------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 1 2347999999999853 356889999885 44567777788889999999998 875 46666
Q ss_pred CC
Q 007053 464 LP 465 (620)
Q Consensus 464 ~P 465 (620)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 65
No 265
>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00017 Score=73.05 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=107.6
Q ss_pred CceEEeChhhHhhh---cccCCCeEEEeccc-ccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEeecCCCCCc
Q 007053 41 NSVVVLHPDTMEKL---QFFRGDTILIKGKK-RKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYG 116 (620)
Q Consensus 41 ~~~~~~~~~~~~~l---~~~~gd~v~i~g~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a 116 (620)
.|-+-|.|+++.+| .+.-=-.-+|+... .+.|.|=|.-- -.+.|.|+|.--.++||++..||.|.|+- ..+|.+
T Consensus 37 GgKIilPPSaL~~Ls~lnI~yPMlFkLtn~~~~r~THcGVLEF-~AeEG~vyLP~WMmq~L~le~gdlv~i~~-v~lpkg 114 (308)
T KOG1816|consen 37 GGKIILPPSALDRLSSLNITYPMLFKLTNVDVDRVTHCGVLEF-TAEEGRVYLPYWMMQNLLLEEGDLVRIRS-VTLPKG 114 (308)
T ss_pred CCeEEeCHHHHHHHHHhcCCCceEEEEeccccceeeeeeEEEE-EecCceEEeehHhhhhccCCCCCeEEEEE-eecccc
Confidence 45678999888875 44333334444431 12577776521 12359999999999999999999999999 799999
Q ss_pred ceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCCce-eecCCceEeeC
Q 007053 117 KRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYC-VVAPDTEIFCE 190 (620)
Q Consensus 117 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~~~-~~~~~t~~~~~ 190 (620)
+=|.+.|-+-+.-.+. .-...|...|+ +..+++.||.|.|.+.+...+|+|+++.|+..| +|..|..+.+.
T Consensus 115 tyvKLqP~s~dFLDIt--NpKAvLE~~LR-n~acLT~gDvi~i~Yn~k~y~i~V~e~kPa~aVsIiEtD~~VDF~ 186 (308)
T KOG1816|consen 115 TYVKLQPHSVDFLDIT--NPKAVLENALR-NYACLTTGDVILINYNEKTYELKVVETKPANAVSIIETDLNVDFD 186 (308)
T ss_pred ceeeeccCCCCccccC--ChHHHHHHHHh-hccccccCCEEEEecCCeEEEEEEEEecCCceeEEEEcceeeccc
Confidence 9999999765543332 23566777777 477999999999999999999999999998755 55556666653
No 266
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.73 E-value=6e-05 Score=76.13 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=51.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
..+-.++||.|||||.+++.+|+.+|.+++.++|++.+ ....+.++|.-+.+.. +-++|||+++|.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~G-aW~cfdefnrl~ 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQSG-AWLCFDEFNRLS 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhcC-chhhhhhhhhhh
Confidence 45667899999999999999999999999999998854 3356777776665543 689999999875
No 267
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.73 E-value=2.4e-05 Score=87.33 Aligned_cols=169 Identities=25% Similarity=0.420 Sum_probs=99.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh--hceeeecCccee-----eeeccccccchH--------HHHHhhhccCCeeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELL-----TMWFGESEANVR--------EIFDKARQSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~l~-----~~~~g~se~~i~--------~if~~A~~~~p~IL~ 392 (620)
.-.+|+.|.+||||-.+++++...++ .+|+.++|..+- +.++|....... ..++.|.. ..+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccH
Confidence 44699999999999999999998764 589999987553 233333333322 22333332 4899
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhh--------cCCCCcceEEEEccCCCCCCCcccccCCCCCCceee---
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEM--------DGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY--- 461 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l--------d~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~--- 461 (620)
+|||..|.-. +.+.||..+ .+-...-.+-||++|++. -..+.+-|||.+.+|
T Consensus 413 ldeIgd~p~~--------------~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d---l~~lv~~g~fredLyyrL 475 (606)
T COG3284 413 LDEIGDMPLA--------------LQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD---LAQLVEQGRFREDLYYRL 475 (606)
T ss_pred HHHhhhchHH--------------HHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC---HHHHHHcCCchHHHHHHh
Confidence 9999887532 233344433 333323368899999874 234556678865333
Q ss_pred ----eeCCChhHHH---HHHHHhhccC-CCCCCcChHHHHhh-cCCCCC--CcHHHHHHHHHHHHH
Q 007053 462 ----IPLPDEESRL---QIFKACLRKS-PVSKDVDLRALAKY-TQGFSG--ADITEICQRACKYAI 516 (620)
Q Consensus 462 ----~~~P~~~eR~---~Il~~~l~~~-~l~~dv~l~~LA~~-t~G~sg--~DL~~l~~~A~~~A~ 516 (620)
+.+|...+|. .+|..++... ......+-+.++.. ...|.| ++|.++++.++..+-
T Consensus 476 ~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 476 NAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred cCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 4556555544 4555544332 21122333333332 234544 678888877775553
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00021 Score=74.91 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=83.2
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhce----eeecCcceeeeec--cc--cccchHHHHHhhh-----ccCCeeeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANF----ISVKGPELLTMWF--GE--SEANVREIFDKAR-----QSAPCVLFF 393 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~----i~i~~~~l~~~~~--g~--se~~i~~if~~A~-----~~~p~IL~i 393 (620)
-++..||+|+.|+||+.+|+.+++.+-+.. -.-+.+.-+..+- |. +-..++++.+... .+...|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 356789999999999999999998872210 0000010000010 11 1123444443332 135579999
Q ss_pred ccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHH
Q 007053 394 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQI 473 (620)
Q Consensus 394 DEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~I 473 (620)
|++|.+. ....+.||..|+..+ ..+++|.+|+.++.|-+.+++ |+. .+.|.+|+.++..+.
T Consensus 97 ~~~e~m~--------------~~a~NaLLK~LEEPp--~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 97 KNIEKTS--------------NSLLNALLKTIEEPP--KDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQKILAK 157 (299)
T ss_pred ecccccC--------------HHHHHHHHHHhhCCC--CCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHHHHHHH
Confidence 9998764 235677888888643 344555555577888888887 775 799999999888877
Q ss_pred HHH
Q 007053 474 FKA 476 (620)
Q Consensus 474 l~~ 476 (620)
|..
T Consensus 158 l~~ 160 (299)
T PRK07132 158 LLS 160 (299)
T ss_pred HHH
Confidence 765
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.67 E-value=0.00069 Score=74.59 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=103.2
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee---------------eeccc-cccc----hHHHHHh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT---------------MWFGE-SEAN----VREIFDK 382 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~---------------~~~g~-se~~----i~~if~~ 382 (620)
.+|..++|+|++|+||||++..+|..+ +..+..+++..... ..++. .... ++..++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 357789999999999999999999877 33444444332210 01111 1111 2334444
Q ss_pred hhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccc--cCCCCCCcee
Q 007053 383 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPAL--LRPGRLDQLI 460 (620)
Q Consensus 383 A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al--~rpgRf~~~i 460 (620)
+... .+|+||...++. ....++.+|........+...++|+-++...+.++.+- ...-.++ -+
T Consensus 173 ~~~~--DvVIIDTAGr~~------------~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~-gv 237 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHA------------LEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-GI 237 (437)
T ss_pred hhcC--CEEEEECCCccc------------chHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCC-EE
Confidence 4433 699999875532 22344555544433334445566665554433333211 1100122 22
Q ss_pred eeeCCChhHHHH-HHHHhh-ccCCCC-----------CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 461 YIPLPDEESRLQ-IFKACL-RKSPVS-----------KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 461 ~~~~P~~~eR~~-Il~~~l-~~~~l~-----------~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
-+.-.|...|.- +|.... -+.|+. ...+.+.++.+.-| .+|+..|++.|...--.+..... .
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~~~~~~---~ 312 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEALDEEEEEKD---V 312 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhhhHHHHHHH---H
Confidence 334445444433 332221 122221 23356677777754 58999999887653221111110 0
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHHh
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 561 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ 561 (620)
+.. ..-..+.+||.+-++.++
T Consensus 313 ~~~-------------~~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 313 EKM-------------MKGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HHH-------------HcCCcCHHHHHHHHHHHH
Confidence 000 012578899999888776
No 270
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.66 E-value=8.2e-05 Score=78.57 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=67.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee----------------eeeccccccchHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----------------TMWFGESEANVREIFDKAR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~----------------~~~~g~se~~i~~if~~A~ 384 (620)
|++..+-++++||||||||+||-.++.+. +..+++++..+-. -......+..+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56777789999999999999999887544 4556666553311 0111111222222333345
Q ss_pred ccCCeeeeeccchhHHhhcCCC--CCC-CCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 385 QSAPCVLFFDELDSIATQRGSS--VGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~--~~~-~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
...+.+|+||-+-.+.+...-. .++ ......+.+.+++..|.......++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5678999999999998632111 011 01122455666666555444445566665544
No 271
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00049 Score=75.18 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=72.3
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCC
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD 409 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~ 409 (620)
-++|+||.+||||++++.+.....-.+++++..++......- ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988887765546666655554332111 122222333333345799999998753
Q ss_pred CCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHH
Q 007053 410 AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQI 473 (620)
Q Consensus 410 ~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~I 473 (620)
.-.+.+..+... ... .+++.+++...-....+-.=+||. ..+.+.|.+..+...+
T Consensus 108 ---~W~~~lk~l~d~---~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 108 ---DWERALKYLYDR---GNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred ---hHHHHHHHHHcc---ccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 223334444332 211 455555443322222222225785 5888888899888653
No 272
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.65 E-value=0.00011 Score=79.28 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=55.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee------ecc--------ccccchHHHHHhhhcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM------WFG--------ESEANVREIFDKARQS 386 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~------~~g--------~se~~i~~if~~A~~~ 386 (620)
|+.+..-+||+|+||+|||+|+..+|... +.++++++..+-... .++ ..+..+..+++.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56777889999999999999999998765 235666655432110 001 1233456677777777
Q ss_pred CCeeeeeccchhHHh
Q 007053 387 APCVLFFDELDSIAT 401 (620)
Q Consensus 387 ~p~IL~iDEiD~l~~ 401 (620)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999864
No 273
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.64 E-value=5.4e-05 Score=80.19 Aligned_cols=161 Identities=24% Similarity=0.391 Sum_probs=89.2
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh-------hceee----e--cCcceeeee----ccccc----cchHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFIS----V--KGPELLTMW----FGESE----ANVREIFDKAR 384 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~-------~~~i~----i--~~~~l~~~~----~g~se----~~i~~if~~A~ 384 (620)
.+|+|++|||.-|||||+|.-.....+- .+|.. | ...++..+. .+.+. .-+.-+-.+..
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 4689999999999999999988775441 12211 1 001111110 01000 11111222211
Q ss_pred ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC-CCCcccccCCCCCCceeeee
Q 007053 385 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIP 463 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~-~~Ld~al~rpgRf~~~i~~~ 463 (620)
. .-++|+|||+..-- -+-.-+++.|.+.|- ..+++++||+||. +.|... -+++..++|
T Consensus 192 ~-ea~lLCFDEfQVTD-----------VADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYkn-----GlQR~~F~P 250 (467)
T KOG2383|consen 192 E-EAILLCFDEFQVTD-----------VADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKN-----GLQRENFIP 250 (467)
T ss_pred h-hceeeeechhhhhh-----------HHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhc-----chhhhhhhh
Confidence 1 13699999985421 011224455555443 3478999999974 333322 234455555
Q ss_pred CCChhHHHHHHHHhhccCCCCCCcChHHHHhhcC-C--CCCC-cHHHHHHHHHH
Q 007053 464 LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQ-G--FSGA-DITEICQRACK 513 (620)
Q Consensus 464 ~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~-G--~sg~-DL~~l~~~A~~ 513 (620)
-..+|+.++.-..+...+|....++-.. + |.+. |...++++--.
T Consensus 251 ------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 251 ------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 3678888988888988899983333221 1 3444 78777766554
No 274
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.62 E-value=0.00013 Score=80.96 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=56.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeee------cc--------ccccchHHHHHhhhcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG--------ESEANVREIFDKARQS 386 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~------~g--------~se~~i~~if~~A~~~ 386 (620)
|+.+..-+||+|+||+|||+|+..++... +.++++++..+-.... .| ..+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 66777889999999999999999998765 4567777654422110 01 1233466677777777
Q ss_pred CCeeeeeccchhHHh
Q 007053 387 APCVLFFDELDSIAT 401 (620)
Q Consensus 387 ~p~IL~iDEiD~l~~ 401 (620)
.|.+|+||.+..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 889999999998864
No 275
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.62 E-value=7.2e-05 Score=87.96 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=102.2
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec-----cc--cccchHHHH---Hh--hhccCCeeeeeccch
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF-----GE--SEANVREIF---DK--ARQSAPCVLFFDELD 397 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~-----g~--se~~i~~if---~~--A~~~~p~IL~iDEiD 397 (620)
.+|++||||.|||+.+.++|.+++..++..+.++..+++. +. ....+...| .. .....-.||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 3799999999999999999999999999999987665432 11 112233333 00 001112399999999
Q ss_pred hHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHh
Q 007053 398 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 477 (620)
Q Consensus 398 ~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~ 477 (620)
.+... .+-.+.++..... ....-+|+++|..+.....-+. |.+..++|+.|+.+.+..-+...
T Consensus 439 ~~~~~-----------dRg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si 501 (871)
T KOG1968|consen 439 GMFGE-----------DRGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSI 501 (871)
T ss_pred cccch-----------hhhhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhh
Confidence 98741 1112333333332 2223456677766554442222 54567999999999998888777
Q ss_pred hccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHH
Q 007053 478 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKY 514 (620)
Q Consensus 478 l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~ 514 (620)
+....+. .+-.++++.+.+ ++||.+.+..-.+.
T Consensus 502 ~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 502 CKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred hcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 6443332 223356666555 78988877655444
No 276
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=4.4e-05 Score=68.48 Aligned_cols=30 Identities=40% Similarity=0.692 Sum_probs=26.9
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
|+|.||||+||||+|+.||+.++++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999987776654
No 277
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.59 E-value=0.0002 Score=79.73 Aligned_cols=166 Identities=19% Similarity=0.233 Sum_probs=92.8
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecC-----cceeee
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-----PELLTM 367 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~-----~~l~~~ 367 (620)
+-.|.|.+.+|.-|.-.+-.-...... ....+..--+|+|.|.|||||+-+.++++.-+-..++ +++ +.|...
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSAAGLTAA 421 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccccccceEE
Confidence 445789999998875444332221111 2223344457999999999999999999986643322 222 112111
Q ss_pred eccccccc---h-HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------Ccc
Q 007053 368 WFGESEAN---V-REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK 432 (620)
Q Consensus 368 ~~g~se~~---i-~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~ 432 (620)
.+...+.. + ...+-.| ...|-+|||+|.+--+. ...++..|+... -+.
T Consensus 422 VvkD~esgdf~iEAGALmLA---DnGICCIDEFDKMd~~d--------------qvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 422 VVKDEESGDFTIEAGALMLA---DNGICCIDEFDKMDVKD--------------QVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred EEecCCCCceeeecCcEEEc---cCceEEechhcccChHh--------------HHHHHHHHHhheehheecceEEeecc
Confidence 11111100 0 0011111 23488999999986321 122344443211 122
Q ss_pred eEEEEccCCCCC-------------CCcccccCCCCCCce-eeeeCCChhHHHHHHHHhhc
Q 007053 433 TVFIIGATNRPD-------------IIDPALLRPGRLDQL-IYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 433 ~viVIatTn~~~-------------~Ld~al~rpgRf~~~-i~~~~P~~~eR~~Il~~~l~ 479 (620)
+--|||++|... .+++++++ |||.. |-++-|++..=..|-++.+.
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHH
Confidence 456788888653 37788888 99953 34577777766666666553
No 278
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.58 E-value=7.6e-05 Score=79.57 Aligned_cols=163 Identities=22% Similarity=0.282 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecC-----cceeeeecc
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-----PELLTMWFG 370 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~-----~~l~~~~~g 370 (620)
|.|.+.+|..+.=.+......... ........-++||.|.||||||.|.+.+++.....+ ++++ ..|......
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECC
T ss_pred CcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceecc
Confidence 668888877764333222111000 000123345899999999999999998876553322 2222 222221111
Q ss_pred c---cccch-HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEE
Q 007053 371 E---SEANV-REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 435 (620)
Q Consensus 371 ~---se~~i-~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~vi 435 (620)
. .+-.+ ...+-.|.. .|++|||+|.+-.. ....|+..|+... -+.+.-
T Consensus 104 d~~~~~~~leaGalvlad~---GiccIDe~dk~~~~--------------~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADG---GICCIDEFDKMKED--------------DRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp CGGTSSECEEE-HHHHCTT---SEEEECTTTT--CH--------------HHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred ccccceeEEeCCchhcccC---ceeeecccccccch--------------HHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 1 11111 123333333 49999999997521 2455666665421 123577
Q ss_pred EEccCCCCC-------------CCcccccCCCCCCceeee-eCCChhHHHHHHHHhhc
Q 007053 436 IIGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEESRLQIFKACLR 479 (620)
Q Consensus 436 VIatTn~~~-------------~Ld~al~rpgRf~~~i~~-~~P~~~eR~~Il~~~l~ 479 (620)
|+|++|... .+++.|++ |||.++.+ ..|+.+.=..+.++.++
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 888988665 37788888 99977665 56665555555554443
No 279
>PF14516 AAA_35: AAA-like domain
Probab=97.57 E-value=0.0034 Score=67.02 Aligned_cols=161 Identities=22% Similarity=0.250 Sum_probs=91.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeecc-------------------------------cc
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-------------------------------ES 372 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g-------------------------------~s 372 (620)
++.-+.|+||..+|||+|...+.+.+ +...+.+++..+-+.... .+
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 46679999999999999999888766 556666665543211000 01
Q ss_pred ccchHHHHHhh---hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---Ccce--EEEEccCCCCC
Q 007053 373 EANVREIFDKA---RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---AKKT--VFIIGATNRPD 444 (620)
Q Consensus 373 e~~i~~if~~A---~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---~~~~--viVIatTn~~~ 444 (620)
.......|+.. ....|-||+|||+|.+.... .....++..|-.....-. .... ++++++| .+.
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t-~~~ 180 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGST-EDY 180 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCc-ccc
Confidence 11223333321 22468899999999997321 122334433333322111 1122 3333333 222
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCC
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGF 499 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~ 499 (620)
.....-.+|-.+...+.++..+.++...+++.+-.. .... .++.|-..|.|.
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgGh 232 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGGH 232 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCCC
Confidence 222222455566678888999999999998887433 2222 267777777774
No 280
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.57 E-value=9e-05 Score=74.34 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=31.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 362 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~ 362 (620)
|++...-++|+||||+|||+++..+|.+. +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 66777789999999999999999998754 5566676655
No 281
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00046 Score=74.22 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
....||.||||+|||+|++.|++....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 456999999999999999999987744
No 282
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.00094 Score=67.35 Aligned_cols=173 Identities=23% Similarity=0.295 Sum_probs=99.9
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhh---ceeeecCccee-----eeec----cccccch--------HHHHHhhh-ccCC
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELL-----TMWF----GESEANV--------REIFDKAR-QSAP 388 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~---~~i~i~~~~l~-----~~~~----g~se~~i--------~~if~~A~-~~~p 388 (620)
-+.++|+.|+|||++.|++...+.- ..+.++.+.+. ..++ ......+ +.+..... ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 5779999999999999977665532 22344433321 1111 1111111 22222223 3456
Q ss_pred eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccC------CCCCCceeee
Q 007053 389 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR------PGRLDQLIYI 462 (620)
Q Consensus 389 ~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~r------pgRf~~~i~~ 462 (620)
.++++||++.+... ....+.-|.+.-+.....-.+++++-.. |.+.++. .-|++..|.+
T Consensus 133 v~l~vdEah~L~~~-----------~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLNDS-----------ALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhChh-----------HHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEec
Confidence 89999999998632 1122222222222222223466665432 2332221 1277766889
Q ss_pred eCCChhHHHHHHHHhhccC----CCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q 007053 463 PLPDEESRLQIFKACLRKS----PVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518 (620)
Q Consensus 463 ~~P~~~eR~~Il~~~l~~~----~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~ 518 (620)
++.+.++-..+++.+++.. ++.++..+..++..+.|+ +.-|.++|..|...|...
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYSA 256 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHHc
Confidence 9999998888998888654 344455577888888884 677777777777666643
No 283
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.52 E-value=0.0002 Score=71.74 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=41.2
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc--ee--------eeeccccccchHHHHHhhh--ccCCeeeeecc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE--LL--------TMWFGESEANVREIFDKAR--QSAPCVLFFDE 395 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~--l~--------~~~~g~se~~i~~if~~A~--~~~p~IL~iDE 395 (620)
+..+||||+||+|||++|+.++.. .-++..+.+. +. ..-...+-..+.+.+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 466999999999999999999742 2223332211 00 0000111122333333332 23467999999
Q ss_pred chhHHh
Q 007053 396 LDSIAT 401 (620)
Q Consensus 396 iD~l~~ 401 (620)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 999865
No 284
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.52 E-value=0.00013 Score=71.56 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=57.9
Q ss_pred eeeecCCCChhHHHHHHH-Hhh-h--hhceeeecCccee----eeecccc-------------ccchHHHHHhhhccCCe
Q 007053 331 VLFYGPPGCGKTLLAKAI-ANE-C--QANFISVKGPELL----TMWFGES-------------EANVREIFDKARQSAPC 389 (620)
Q Consensus 331 vLL~GppGtGKT~LAral-A~~-l--~~~~i~i~~~~l~----~~~~g~s-------------e~~i~~if~~A~~~~p~ 389 (620)
.|++|.||+|||+.|-.. ... + |.+++. +.+.|- ....+.. ................+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987555 322 2 444443 433221 1111110 00111122111112457
Q ss_pred eeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCC
Q 007053 390 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465 (620)
Q Consensus 390 IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P 465 (620)
+|+|||++.+++.+.... ......+ +++.... ..+.-|+.+|..+..||+.++. +.+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc----ccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999998765420 1123344 3344332 2345677789999999999976 77777776654
No 285
>PRK08118 topology modulation protein; Reviewed
Probab=97.51 E-value=0.00012 Score=70.20 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=29.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
.|++.||||+||||||+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999888764
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00036 Score=65.67 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.7
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
....++++|+||+||||++..++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 356799999999999999999998773
No 287
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.50 E-value=8.2e-05 Score=70.87 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=30.3
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+++..|+|+|+||||||++|+.||..++.+|+..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4577899999999999999999999999887754
No 288
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00035 Score=80.05 Aligned_cols=162 Identities=24% Similarity=0.273 Sum_probs=88.7
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhh-cCCCCCceeeeecCCCChhHHHHHHHHhhhhhce-eeecCcceeeeecccc
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEK-FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-ISVKGPELLTMWFGES 372 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~-~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~-i~i~~~~l~~~~~g~s 372 (620)
.|.|++.+|+.|.=.+-..... .... ..+..--+|||.|.||||||.|.+.+++.+-..+ .+-.++.- +|-+
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLT 360 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLT 360 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCce
Confidence 3679999988875433322111 0100 0122235799999999999999999998774433 22222221 1222
Q ss_pred ccchHHHH-----Hhh---hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC-----------CCcce
Q 007053 373 EANVREIF-----DKA---RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----------SAKKT 433 (620)
Q Consensus 373 e~~i~~if-----~~A---~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~-----------~~~~~ 433 (620)
...++.-+ -+| ....+.|.+|||+|.+... -...+...|+.. .-+.+
T Consensus 361 Aav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aihEaMEQQtIsIaKAGI~atLnAR 426 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIHEAMEQQTISIAKAGITATLNAR 426 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHHHHHHhcEeeecccceeeecchh
Confidence 22222211 111 1133569999999987521 122333333321 11234
Q ss_pred EEEEccCCCCC-------------CCcccccCCCCCCceeee-eCCChhHHHHHHHHhh
Q 007053 434 VFIIGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEESRLQIFKACL 478 (620)
Q Consensus 434 viVIatTn~~~-------------~Ld~al~rpgRf~~~i~~-~~P~~~eR~~Il~~~l 478 (620)
.-|+|++|... .|++.|++ |||.++.+ ..|+.+.=..+.++.+
T Consensus 427 csvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 427 CSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHH
Confidence 66888888664 37788998 99966654 3566554444444433
No 289
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.44 E-value=0.00021 Score=71.22 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=30.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecC
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 361 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~ 361 (620)
|+.+..-++|+|+||||||+++..+|.+. +.++++++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 66777789999999999999999998765 345666644
No 290
>PRK09354 recA recombinase A; Provisional
Probab=97.41 E-value=0.00034 Score=74.51 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=66.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee----------------eeeccccccchHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----------------TMWFGESEANVREIFDKAR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~----------------~~~~g~se~~i~~if~~A~ 384 (620)
|++..+-++|+||||||||+|+-.++... +...++++..+-. -......+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777789999999999999998876543 4556666544311 1101111222222223344
Q ss_pred ccCCeeeeeccchhHHhhcC--CCCCC-CCCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 385 QSAPCVLFFDELDSIATQRG--SSVGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~--~~~~~-~~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
...+.+|+||-+-.|.+... ...++ ......+++++++..|.......++.+|.|.
T Consensus 136 s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 136 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred cCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 56788999999999875311 11011 1123445666655544444334455666554
No 291
>PHA00729 NTP-binding motif containing protein
Probab=97.41 E-value=0.00018 Score=72.11 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
.+++|+|+||||||+||.+|++.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999886433
No 292
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.40 E-value=0.0054 Score=67.25 Aligned_cols=204 Identities=14% Similarity=0.177 Sum_probs=105.1
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee--------------e-eecc-ccc----cchHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL--------------T-MWFG-ESE----ANVREIFDKA 383 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~--------------~-~~~g-~se----~~i~~if~~A 383 (620)
++..++|.|++|+||||++..||..+ |..+.-+++.... . .++. ..+ ....+.++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 46779999999999999999999776 4445545442211 0 0111 111 1123345555
Q ss_pred hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc--ccccCCCCCCceee
Q 007053 384 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID--PALLRPGRLDQLIY 461 (620)
Q Consensus 384 ~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld--~al~rpgRf~~~i~ 461 (620)
+.....+||||=..++. ....++.++....+...+...++|+-++.-.+.++ .++...-.++ -+-
T Consensus 179 ~~~~~DvViIDTaGr~~------------~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~-g~I 245 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK------------QEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG-SVI 245 (429)
T ss_pred HhCCCCEEEEECCCCCc------------chHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCc-EEE
Confidence 54455799999764422 22345555555554444545566665543322222 2221111122 233
Q ss_pred eeCCChhHHHH-HHHH-hhccCCCC-----------CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 462 IPLPDEESRLQ-IFKA-CLRKSPVS-----------KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 528 (620)
Q Consensus 462 ~~~P~~~eR~~-Il~~-~l~~~~l~-----------~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~ 528 (620)
+.-.|...|.- +|.. +.-+.|+. ...+...++.+.-| -+|+..|++.|...-..+...... .
T Consensus 246 lTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg--mgDi~~L~ek~~~~~~~~~~~~~~---~ 320 (429)
T TIGR01425 246 ITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG--MGDIEGLIDKVQDLKLDDNEKALI---E 320 (429)
T ss_pred EECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc--CCCcHHHHHHHHHhhhHHHHHHHH---H
Confidence 45556555552 2221 11122221 22345667777654 479999998876432222111111 0
Q ss_pred HhccCCcccccccccchhhhhHHHHHHHHHHHh
Q 007053 529 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 561 (620)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ 561 (620)
.. .....+.+||.+.++.++
T Consensus 321 k~-------------~~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 321 KL-------------KEGTFTLRDMYEQFQNLL 340 (429)
T ss_pred HH-------------HhCCCCHHHHHHHHHHHH
Confidence 00 012578899999988776
No 293
>PRK07261 topology modulation protein; Provisional
Probab=97.37 E-value=0.00026 Score=68.14 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=28.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
.|+|.|+||+||||||+.|+..++.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 48999999999999999999999888877654
No 294
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00054 Score=80.37 Aligned_cols=140 Identities=26% Similarity=0.405 Sum_probs=96.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh----------hhceeeecCccee--eeeccccccchHHHHHhhh-ccCCeeeeec
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKAR-QSAPCVLFFD 394 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i~~~~l~--~~~~g~se~~i~~if~~A~-~~~p~IL~iD 394 (620)
.++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+.+++. .....|||||
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfig 287 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLG 287 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 3678999999999999999999875 2345555554443 4667888899999998887 4456799999
Q ss_pred cchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC-----CCCcccccCCCCCCceeeeeCCChhH
Q 007053 395 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-----DIIDPALLRPGRLDQLIYIPLPDEES 469 (620)
Q Consensus 395 EiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~-----~~Ld~al~rpgRf~~~i~~~~P~~~e 469 (620)
|++.+....... ..-...+ +|..+. ..+.+.+|+||..- -.-+|++-+ ||+ .+.++.|+.+.
T Consensus 288 elh~lvg~g~~~------~~~d~~n-lLkp~L---~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~ 354 (898)
T KOG1051|consen 288 ELHWLVGSGSNY------GAIDAAN-LLKPLL---ARGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVEN 354 (898)
T ss_pred ceeeeecCCCcc------hHHHHHH-hhHHHH---hcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccc
Confidence 999998543220 1112222 222222 23448899887522 135899998 998 78899999888
Q ss_pred HHHHHHHhhcc
Q 007053 470 RLQIFKACLRK 480 (620)
Q Consensus 470 R~~Il~~~l~~ 480 (620)
-..||+..-..
T Consensus 355 ~~~iL~~l~~~ 365 (898)
T KOG1051|consen 355 LSLILPGLSER 365 (898)
T ss_pred hhhhhhhhhhh
Confidence 77777665433
No 295
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.35 E-value=0.00072 Score=69.78 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=61.6
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeec-Cccee-
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVK-GPELL- 365 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~-~~~l~- 365 (620)
..++++|-.....+.|++++.. +...++|.||+|+||||+++++...+. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 4567777666677666666543 234589999999999999999987663 2344442 22221
Q ss_pred ----eeecc-ccccchHHHHHhhhccCCeeeeeccchh
Q 007053 366 ----TMWFG-ESEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 366 ----~~~~g-~se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
...+. +...........+.+..|.+|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 11111 1123466777778888999999999843
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.35 E-value=0.0003 Score=67.91 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=23.1
Q ss_pred eeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
+|++||||||||+++..++.+. |.++++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 7899999999999999887654 44454444
No 297
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.33 E-value=0.0016 Score=68.95 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=90.5
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee---------
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--------- 366 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~--------- 366 (620)
+.+-+.++..|..++-. . .-.-|..+.|||..|||||.+.+.+.+.++.+.+.++|-+.+.
T Consensus 8 v~~Re~qi~~L~~Llg~-~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN-N---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccchHHHHHHHHHHhCC-C---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 44567777777666542 1 0123667899999999999999999999988888877654431
Q ss_pred -e-----ecccc----ccchHH---HHHh---hhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC
Q 007053 367 -M-----WFGES----EANVRE---IFDK---ARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 429 (620)
Q Consensus 367 -~-----~~g~s----e~~i~~---if~~---A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~ 429 (620)
+ +-|.. ..++.. .|.. +.+. ..-.|++|++|.+.. ...-+++.|+..-.-+.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-----------~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-----------MDAILLQCLFRLYELLN 146 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-----------cchHHHHHHHHHHHHhC
Confidence 1 11111 112222 2222 1112 346888999999862 11235555555443333
Q ss_pred CcceEEEEccCCCCCCCcccccCCCCC-CceeeeeCCChhHHHHHHHHhh
Q 007053 430 AKKTVFIIGATNRPDIIDPALLRPGRL-DQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 430 ~~~~viVIatTn~~~~Ld~al~rpgRf-~~~i~~~~P~~~eR~~Il~~~l 478 (620)
...-++++.....+..- +.+-|-+ -.+++||.|+.++..+|+..--
T Consensus 147 ~~~i~iils~~~~e~~y---~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 147 EPTIVIILSAPSCEKQY---LINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CCceEEEEeccccHHHh---hcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 33222222222222111 1111233 2478999999999999987644
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0016 Score=70.74 Aligned_cols=165 Identities=13% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh-------hc--eeeecCcce------------ee--eeccccccchHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ-------AN--FISVKGPEL------------LT--MWFGESEANVREIFDKA 383 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~-------~~--~i~i~~~~l------------~~--~~~g~se~~i~~if~~A 383 (620)
.+..++|+||+|+||||++..+|..+. .. ++.+++... ++ -........+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356899999999999999999987653 22 344443211 00 01111222333333333
Q ss_pred hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC-cceEEEEccCCCCCCCcccccCCC--CCCcee
Q 007053 384 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDPALLRPG--RLDQLI 460 (620)
Q Consensus 384 ~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~-~~~viVIatTn~~~~Ld~al~rpg--Rf~~~i 460 (620)
....+|+||.+..... . ...+..+...++.... ...++|+.+|.....+...+.+-. .++ -+
T Consensus 253 --~~~DlVLIDTaGr~~~-----------~-~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~ 317 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK-----------D-FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TV 317 (388)
T ss_pred --CCCCEEEEcCCCCCcc-----------C-HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EE
Confidence 3357999999876531 1 1124455555554432 256788888877666665444311 133 44
Q ss_pred eeeCCChhHHHH-HHHHhhc-cCCC---------CCC---cChHHHHhhcCCCCCCcHHH
Q 007053 461 YIPLPDEESRLQ-IFKACLR-KSPV---------SKD---VDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 461 ~~~~P~~~eR~~-Il~~~l~-~~~l---------~~d---v~l~~LA~~t~G~sg~DL~~ 506 (620)
-|.-.|...+.- +|..... +.|+ ..| .+...+++..-||+-++=..
T Consensus 318 I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~~~~ 377 (388)
T PRK12723 318 IFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAE 377 (388)
T ss_pred EEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccchHH
Confidence 455556555544 3333221 1222 112 24556777777887665333
No 299
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.32 E-value=0.00069 Score=81.72 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=88.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee------eeec-cc--cccch-HHHHHhhhccCCeeeeeccc
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWF-GE--SEANV-REIFDKARQSAPCVLFFDEL 396 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~------~~~~-g~--se~~i-~~if~~A~~~~p~IL~iDEi 396 (620)
..+++||.|.||+|||+|+.|+|+..|-.+++|+.++-. +.+. ++ .+-.. ..-|-.|.+.. .-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 357899999999999999999999999999999977532 2221 12 11111 12233333332 37889998
Q ss_pred hhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC------------CCcceEEEEccCCCCC------CCcccccCCCCCCc
Q 007053 397 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGM------------SAKKTVFIIGATNRPD------IIDPALLRPGRLDQ 458 (620)
Q Consensus 397 D~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~------------~~~~~viVIatTn~~~------~Ld~al~rpgRf~~ 458 (620)
..-. ..++..|-..+|.- ....+..|+||-|..+ .|+..+.. ||.
T Consensus 1621 NLaS--------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs- 1683 (4600)
T COG5271 1621 NLAS--------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS- 1683 (4600)
T ss_pred hhhH--------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-
Confidence 6532 22444443333321 2234678888887654 37788877 886
Q ss_pred eeeeeCCChhHHHHHHHHhhc
Q 007053 459 LIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 459 ~i~~~~P~~~eR~~Il~~~l~ 479 (620)
++++...+..+...|......
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eEEecccccchHHHHHHhhCC
Confidence 788888888888888776654
No 300
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.31 E-value=0.00072 Score=69.12 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=25.0
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
.....++|.||+|||||+|++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34667999999999999999999987754
No 301
>PRK10867 signal recognition particle protein; Provisional
Probab=97.27 E-value=0.0034 Score=69.06 Aligned_cols=205 Identities=15% Similarity=0.209 Sum_probs=101.1
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh----hhceeeecCcceee---------------eecc----cc-ccchHHHHH
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT---------------MWFG----ES-EANVREIFD 381 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~~~l~~---------------~~~g----~s-e~~i~~if~ 381 (620)
.+|.-+++.||+|+||||++..+|..+ +..+..+++..... .++. .. ........+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 456789999999999999888888755 34455554432110 0011 11 112233445
Q ss_pred hhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcc--cccCCCCCCce
Q 007053 382 KARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP--ALLRPGRLDQL 459 (620)
Q Consensus 382 ~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~--al~rpgRf~~~ 459 (620)
.++.....+|++|-..++. ....++.++....+...+...++|+-++...+.++. .+...-.++ -
T Consensus 178 ~a~~~~~DvVIIDTaGrl~------------~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~-g 244 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLH------------IDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLT-G 244 (433)
T ss_pred HHHhcCCCEEEEeCCCCcc------------cCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCC-E
Confidence 5555566799999765432 112344444443333344444555544432222221 111101122 2
Q ss_pred eeeeCCChhHHHHHHHHhh--ccCCCC-----------CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 460 IYIPLPDEESRLQIFKACL--RKSPVS-----------KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 526 (620)
Q Consensus 460 i~~~~P~~~eR~~Il~~~l--~~~~l~-----------~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~ 526 (620)
+-+.-.|...|.-..-... -+.|+. ...+.+.++.+.-| .+|+..|++.|...--.+.......
T Consensus 245 iIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg--mgD~~~l~e~~~~~~~~~~~~~~~~- 321 (433)
T PRK10867 245 VILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG--MGDVLSLIEKAQEVVDEEKAEKLAK- 321 (433)
T ss_pred EEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHHHH-
Confidence 3334444444333222211 112211 22345677777754 5899999988765322221111100
Q ss_pred HHHhccCCcccccccccchhhhhHHHHHHHHHHHh
Q 007053 527 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 561 (620)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ 561 (620)
.. ..-..+.+||..-++.++
T Consensus 322 --~~-------------~~g~f~l~d~~~q~~~~~ 341 (433)
T PRK10867 322 --KL-------------KKGKFDLEDFLEQLQQMK 341 (433)
T ss_pred --HH-------------HhCCCCHHHHHHHHHHHH
Confidence 00 012478899999888776
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.27 E-value=0.00054 Score=67.56 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=43.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhh----ceeeecCc-cee--------e-eeccccccchHHHHHhhhccCCeeeeecc
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQA----NFISVKGP-ELL--------T-MWFGESEANVREIFDKARQSAPCVLFFDE 395 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~----~~i~i~~~-~l~--------~-~~~g~se~~i~~if~~A~~~~p~IL~iDE 395 (620)
-++|.||+|+||||++++++..+.. .++.+..+ ++. . ..++.....+.+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887742 22322211 111 1 11222233455666677777899999999
Q ss_pred c
Q 007053 396 L 396 (620)
Q Consensus 396 i 396 (620)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 303
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.27 E-value=0.00033 Score=67.24 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=37.1
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc---eeeecCcc
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPE 363 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~---~i~i~~~~ 363 (620)
+.|.++..++|...+. ... -..++.++|+|++|+|||+|++++...+..+ ++.+++..
T Consensus 2 fvgR~~e~~~l~~~l~-~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHH-HHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5688888888888885 221 2346789999999999999999998887554 55555433
No 304
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.27 E-value=0.00058 Score=73.22 Aligned_cols=71 Identities=21% Similarity=0.391 Sum_probs=47.2
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh----hceeeecCc-cee---------eeeccccccchHHHHHhhhccCCeeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-ELL---------TMWFGESEANVREIFDKARQSAPCVLF 392 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~----~~~i~i~~~-~l~---------~~~~g~se~~i~~if~~A~~~~p~IL~ 392 (620)
+...+|+.||+|+||||+++++...+. .+++.+.-+ ++. ....|.......+.+..+....|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 456789999999999999999988663 233333211 111 111232233466677777788999999
Q ss_pred eccch
Q 007053 393 FDELD 397 (620)
Q Consensus 393 iDEiD 397 (620)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99983
No 305
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.27 E-value=0.00047 Score=69.67 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=26.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
|+++...++|.||||||||+++..++... +...+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56667789999999999999986655433 33444444
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.25 E-value=0.0009 Score=65.93 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=52.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcce----eeeeccccccchHHHHHhhhc---------cCCeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL----LTMWFGESEANVREIFDKARQ---------SAPCVL 391 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l----~~~~~g~se~~i~~if~~A~~---------~~p~IL 391 (620)
.+..+|.||||||||++++.+...+. ..++.+....- +....+.....+..++..... ....+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 35688999999999999999887663 34444332210 111122223344444433221 234799
Q ss_pred eeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 392 FFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 392 ~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
++||+..+. .+.+..++..+.. ...++++++=.+
T Consensus 98 iVDEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 98 IVDEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EESSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred EEecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 999986653 3345566666543 234677777544
No 307
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00056 Score=68.88 Aligned_cols=28 Identities=36% Similarity=0.581 Sum_probs=23.8
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+....-+-|.||+|||||||.+.+|...
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456679999999999999999999754
No 308
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.22 E-value=0.0035 Score=70.13 Aligned_cols=156 Identities=17% Similarity=0.237 Sum_probs=98.0
Q ss_pred CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCC
Q 007053 387 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 466 (620)
Q Consensus 387 ~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~ 466 (620)
.|+|++|.+++.++.. ....|.+..+...+... ...++++ +.+ -.+++.|. ++-.++.+|+|+
T Consensus 81 ~~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~~~--~~~~i~~-~~~--~~~p~el~---~~~~~~~~~lP~ 143 (489)
T CHL00195 81 TPALFLLKDFNRFLND---------ISISRKLRNLSRILKTQ--PKTIIII-ASE--LNIPKELK---DLITVLEFPLPT 143 (489)
T ss_pred CCcEEEEecchhhhcc---------hHHHHHHHHHHHHHHhC--CCEEEEE-cCC--CCCCHHHH---hceeEEeecCcC
Confidence 3789999999999821 13345555555544432 2234444 332 34666665 455688999999
Q ss_pred hhHHHHHHHHhhccCCC-CCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccch
Q 007053 467 EESRLQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEV 545 (620)
Q Consensus 467 ~~eR~~Il~~~l~~~~l-~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (620)
.+++.++++.+...... ..+.+++.+++.+.|+|..+++.++..+... ...+... .
T Consensus 144 ~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~--~~~~~~~---------------------~ 200 (489)
T CHL00195 144 ESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT--YKTIDEN---------------------S 200 (489)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCCChh---------------------h
Confidence 99999999888754332 2345678999999999999999888764321 1111100 0
Q ss_pred hhhhHHHHH------HHHHHHhhcCChHHHHHHHHHHHHHhhh
Q 007053 546 AEIKAVHFE------ESMKYARRSVSDADIRKYQAFAQTLQQS 582 (620)
Q Consensus 546 ~~vt~~df~------~Al~~~~psvs~~di~~~e~~k~~l~~~ 582 (620)
.....+.-. ..++-..++++++||+|++.+|+.+.+.
T Consensus 201 ~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~ 243 (489)
T CHL00195 201 IPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKR 243 (489)
T ss_pred HHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHH
Confidence 000011111 1223335788999999999999998864
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.21 E-value=0.00057 Score=69.02 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=29.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
|++....++++|+||||||+++.+++.+. +..+++++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 67778889999999999999999997543 44444443
No 310
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.21 E-value=0.00023 Score=79.65 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=46.3
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-hceeeecC
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKG 361 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-~~~i~i~~ 361 (620)
.|+|+.|++++++++.+++..... .++ ...+.++|.||||+|||+||+.||+.+. .+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 578999999999999988743221 111 2345789999999999999999998773 34444433
No 311
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.20 E-value=0.00071 Score=66.83 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=43.5
Q ss_pred cCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhce----eeecCcceeeee-------ccc-----cccchHHHHH
Q 007053 323 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANF----ISVKGPELLTMW-------FGE-----SEANVREIFD 381 (620)
Q Consensus 323 ~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~----i~i~~~~l~~~~-------~g~-----se~~i~~if~ 381 (620)
+.+...+.++|.||+|+|||||.+.++... |.++ +.+....++... .+. ....+..+++
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~ 99 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVE 99 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHH
Confidence 344445678999999999999999998533 3221 011111111100 011 1133556666
Q ss_pred hhhccCCeeeeeccch
Q 007053 382 KARQSAPCVLFFDELD 397 (620)
Q Consensus 382 ~A~~~~p~IL~iDEiD 397 (620)
.+....|.+|++||.-
T Consensus 100 ~~~~~~p~llllDEp~ 115 (199)
T cd03283 100 KAKKGEPVLFLLDEIF 115 (199)
T ss_pred hccCCCCeEEEEeccc
Confidence 6554578999999963
No 312
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.20 E-value=0.00035 Score=55.61 Aligned_cols=34 Identities=32% Similarity=0.608 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 007053 546 AEIKAVHFEESMKYARRSVSDADIRKYQAFAQTL 579 (620)
Q Consensus 546 ~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l 579 (620)
..|+.+||..||++++|||+.+|+..|++|.++|
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~F 61 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEF 61 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 4799999999999999999999999999999987
No 313
>PRK10536 hypothetical protein; Provisional
Probab=97.20 E-value=0.0016 Score=66.41 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.9
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..+++.||+|||||+||.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 314
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.19 E-value=0.00045 Score=71.32 Aligned_cols=99 Identities=23% Similarity=0.410 Sum_probs=61.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc---eeeec-Ccce
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISVK-GPEL 364 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~---~i~i~-~~~l 364 (620)
...++++++-.....+.+.+++... +....++++.||+|+||||+++++...+... ++.+. ..++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3456677765555555555555532 1236789999999999999999999877443 33332 2222
Q ss_pred ee------eec-cccccchHHHHHhhhccCCeeeeeccchh
Q 007053 365 LT------MWF-GESEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 365 ~~------~~~-g~se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
.- .+. ........+++..+.+..|.+|++.|+-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 10 111 12345678888888889999999999843
No 315
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.17 E-value=0.012 Score=64.35 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=82.8
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeee-cCc---ceeeeeccc
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGP---ELLTMWFGE 371 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i-~~~---~l~~~~~g~ 371 (620)
|.|.+++|+.+-=++-.-. ...+-..+.+..--+|||.|.|||.|+-|.+-+-.-.-.-++.- .++ .|.......
T Consensus 333 IfG~~DiKkAiaClLFgGs-rK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD 411 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLLFGGS-RKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRD 411 (729)
T ss_pred hcCchhHHHHHHHHhhcCc-cccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEec
Confidence 6788999988754332211 11111111222334799999999999999998876543332221 111 111110000
Q ss_pred cccchHHHHHhh---hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHH-HHHhhhhc-CCC--CcceEEEEccCCCCC
Q 007053 372 SEANVREIFDKA---RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL-NQLLTEMD-GMS--AKKTVFIIGATNRPD 444 (620)
Q Consensus 372 se~~i~~if~~A---~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl-~~LL~~ld-~~~--~~~~viVIatTn~~~ 444 (620)
+ ..++++-+- .-....|++|||+|.+-.... -+..+.+ .|-+..-. |+. -+.+.-|+|++|.+.
T Consensus 412 ~--~tReFylEGGAMVLADgGVvCIDEFDKMre~DR-------VAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvf 482 (729)
T KOG0481|consen 412 P--STREFYLEGGAMVLADGGVVCIDEFDKMREDDR-------VAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVF 482 (729)
T ss_pred C--CcceEEEecceEEEecCCEEEeehhhccCchhh-------hHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCcc
Confidence 0 011111110 011235999999999853210 0111111 11111111 111 134566788887552
Q ss_pred -----------CC--cccccCCCCCCceeeeeCCChhHHHHHHHH
Q 007053 445 -----------II--DPALLRPGRLDQLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 445 -----------~L--d~al~rpgRf~~~i~~~~P~~~eR~~Il~~ 476 (620)
.+ -+.+++ |||.++-+.--..++|-..+..
T Consensus 483 GRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAk 525 (729)
T KOG0481|consen 483 GRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAK 525 (729)
T ss_pred ccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHH
Confidence 23 367777 9998888776655555444433
No 316
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.16 E-value=0.00087 Score=74.44 Aligned_cols=78 Identities=28% Similarity=0.441 Sum_probs=54.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeee------cc--------ccccchHHHHHhhhcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG--------ESEANVREIFDKARQS 386 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~------~g--------~se~~i~~if~~A~~~ 386 (620)
|+.+..-+||+|+||+|||+|+..++... +.++++++..+-.... ++ ..+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67778889999999999999999987755 3356666654321100 00 1123455666666677
Q ss_pred CCeeeeeccchhHHh
Q 007053 387 APCVLFFDELDSIAT 401 (620)
Q Consensus 387 ~p~IL~iDEiD~l~~ 401 (620)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998863
No 317
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.16 E-value=0.0014 Score=62.19 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=25.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...++|.||+||||++|.+++|...
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44567789999999999999999999854
No 318
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.15 E-value=0.00061 Score=68.57 Aligned_cols=117 Identities=13% Similarity=0.176 Sum_probs=63.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---------hhceeeecCcceeee---------------------ec-c-c
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLTM---------------------WF-G-E 371 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---------~~~~i~i~~~~l~~~---------------------~~-g-~ 371 (620)
|++...-+.|+||||||||+++..++... +...++++..+-... ++ . .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56777889999999999999999997442 145666665431100 00 0 0
Q ss_pred cccc----hHHHHHhhhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 372 SEAN----VREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 372 se~~----i~~if~~A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
.... +..+-...... .+.+|+||-+..+........ .......+.+..++..|..+....++.|+.|..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0001 11121222334 788999999998864211110 000122345566666665554445566665553
No 319
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.13 E-value=0.001 Score=74.82 Aligned_cols=158 Identities=23% Similarity=0.347 Sum_probs=81.5
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcC-CCCCceeeeecCCCChhHHHHHHHHhhhhhceee-ecCccee--eeecc
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPELL--TMWFG 370 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~-i~~~~l~--~~~~g 370 (620)
.|.|++++|+-|.=.+-. .....+.+.| ...--+|||+|.||||||.+.+.+++.+..-.+. =.++.-. ..|+.
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 366888888876433222 1122233322 2233579999999999999999999876432211 1111110 01110
Q ss_pred ccccchHHHHHhh---hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhh-----h-cCC--CCcceEEEEcc
Q 007053 371 ESEANVREIFDKA---RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE-----M-DGM--SAKKTVFIIGA 439 (620)
Q Consensus 371 ~se~~i~~if~~A---~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~-----l-d~~--~~~~~viVIat 439 (620)
.. ...+++.-+. ..+...|-+|||+|.+... .+.++.+.+.. - -|+ .-+.+.-|+|+
T Consensus 508 rd-~dtkqlVLesGALVLSD~GiCCIDEFDKM~dS-----------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAa 575 (804)
T KOG0478|consen 508 KD-PDTRQLVLESGALVLSDNGICCIDEFDKMSDS-----------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAA 575 (804)
T ss_pred ec-CccceeeeecCcEEEcCCceEEchhhhhhhHH-----------HHHHHHHHHHHhhhhHhhcceeeeccccceeeee
Confidence 00 0011111110 1122358899999999522 22222222221 0 111 11235678888
Q ss_pred CCCCC-------------CCcccccCCCCCCceee-eeCCChh
Q 007053 440 TNRPD-------------IIDPALLRPGRLDQLIY-IPLPDEE 468 (620)
Q Consensus 440 Tn~~~-------------~Ld~al~rpgRf~~~i~-~~~P~~~ 468 (620)
+|... .|+|.|++ |||.++- ++.||+.
T Consensus 576 ANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 576 ANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 88442 37899998 9996543 4666665
No 320
>PRK14974 cell division protein FtsY; Provisional
Probab=97.13 E-value=0.0014 Score=69.90 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.-++|.||+|+||||++..+|..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36779999999999999999888766
No 321
>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; GO: 0005524 ATP binding, 0007031 peroxisome organization, 0005777 peroxisome; PDB: 1WLF_A.
Probab=97.12 E-value=0.00054 Score=57.32 Aligned_cols=73 Identities=27% Similarity=0.454 Sum_probs=50.2
Q ss_pred cceEEeecc-CCcccccccchhhhhhhhhhhhhccccccCCeEEEec-CceeEEEEEEEeCCCC----ceeecCCceEee
Q 007053 116 GKRVHILPV-DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRG-GMRSVEFKVIETDPPE----YCVVAPDTEIFC 189 (620)
Q Consensus 116 a~~v~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~-~~~~~~~~v~~~~p~~----~~~~~~~t~~~~ 189 (620)
|++|.+.|. .++|+-+ ++...++...|.++-|.|..|..++++. .+..+.|+|.++.|.. .+.++++|++.+
T Consensus 1 A~~V~veP~T~dDWEIl--El~A~~lE~~lL~QiRvv~~~~~~~v~v~~~~~i~~~V~~i~p~~~~~~~~~L~~~TEv~V 78 (80)
T PF09262_consen 1 AKSVEVEPLTSDDWEIL--ELHAEFLEDQLLSQIRVVFPGQVFPVWVSQNTVIKFKVVSIEPSSSAEGCARLSPDTEVIV 78 (80)
T ss_dssp -SEEEEEESSHHHHHHH--HHS-SSHHHHHHHH--EE-TT-EEEEESSSS-EEEEEEEEEES--S---SEE--TT-EEEE
T ss_pred CcEEEEEcCCccHHHHH--HHhHHHHHHHHHHhheeecCCCEEEEEEcCCeEEEEEEEEccCCCCceeEEEeCCCcEEEE
Confidence 578889997 4567655 4557889999999999999999999998 4568999999999976 489999999986
Q ss_pred C
Q 007053 190 E 190 (620)
Q Consensus 190 ~ 190 (620)
.
T Consensus 79 a 79 (80)
T PF09262_consen 79 A 79 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 322
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.11 E-value=0.00064 Score=65.34 Aligned_cols=23 Identities=43% Similarity=0.769 Sum_probs=20.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l 352 (620)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.11 E-value=0.01 Score=65.31 Aligned_cols=204 Identities=16% Similarity=0.220 Sum_probs=99.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh----hhceeeecCcceee---------------e-ec-c--ccc-cchHHHHHh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT---------------M-WF-G--ESE-ANVREIFDK 382 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~~~l~~---------------~-~~-g--~se-~~i~~if~~ 382 (620)
+|..+++.|++|+||||++..+|..+ +..+..+++..... . +. + ... ......++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 46789999999999999988888764 34455555432210 0 10 0 111 122344555
Q ss_pred hhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcc--cccCCCCCCcee
Q 007053 383 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP--ALLRPGRLDQLI 460 (620)
Q Consensus 383 A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~--al~rpgRf~~~i 460 (620)
+......+|++|-...+. ....++.++-...+.+.+...++|+-++...+.+.- .+...-.++.+|
T Consensus 178 ~~~~~~DvVIIDTaGr~~------------~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giI 245 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQ------------IDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVV 245 (428)
T ss_pred HHhcCCCEEEEeCCCccc------------cCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEE
Confidence 555556789998754432 112233333333333334444555554432222211 111101233233
Q ss_pred eeeCCChhHHHHHHHHhhc--cCCCC-----------CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 461 YIPLPDEESRLQIFKACLR--KSPVS-----------KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 461 ~~~~P~~~eR~~Il~~~l~--~~~l~-----------~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
+.-.|...|.-....... +.|+. ...+.+.++.+.-| .+|+..|++.|...--.+.......
T Consensus 246 -lTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg--~gD~~~l~e~~~~~~~~~~~~~~~~-- 320 (428)
T TIGR00959 246 -LTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILG--MGDILSLVEKAQEVVDEEEAKKLAE-- 320 (428)
T ss_pred -EeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHHHH--
Confidence 444444444333222211 12211 12345667777654 5899999988764322211111110
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHHh
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 561 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ 561 (620)
.. .....+.+||.+-++.++
T Consensus 321 -~~-------------~~~~f~l~d~~~q~~~~~ 340 (428)
T TIGR00959 321 -KM-------------KKGQFDLEDFLEQLRQIK 340 (428)
T ss_pred -HH-------------HhCCCCHHHHHHHHHHHH
Confidence 00 012478899998888776
No 324
>PRK13947 shikimate kinase; Provisional
Probab=97.10 E-value=0.00038 Score=66.46 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=28.4
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
+|+|.|+||||||++++.||+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987654
No 325
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00033 Score=64.89 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=29.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
..+||++|-||||||+++..||..+++.+|.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 457999999999999999999999998887763
No 326
>PRK03839 putative kinase; Provisional
Probab=97.09 E-value=0.00036 Score=67.47 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=27.9
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.|+|.|+||+||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999998887654
No 327
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.07 E-value=0.00032 Score=64.63 Aligned_cols=27 Identities=44% Similarity=0.779 Sum_probs=23.6
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
|+++|||||||||+|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 789999999999999999998884443
No 328
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0015 Score=70.40 Aligned_cols=110 Identities=15% Similarity=0.318 Sum_probs=60.7
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh----h-hceeeecCccee-------e---eecc------ccccchHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC----Q-ANFISVKGPELL-------T---MWFG------ESEANVREIFDKAR 384 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l----~-~~~i~i~~~~l~-------~---~~~g------~se~~i~~if~~A~ 384 (620)
.....++|.||+|+||||++..||..+ + ..+..+.+..+. . ++.| .....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 346689999999999999999999764 2 123333322210 0 0011 1112233333332
Q ss_pred ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-CcceEEEEccCCCCCCCcccc
Q 007053 385 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNRPDIIDPAL 450 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-~~~~viVIatTn~~~~Ld~al 450 (620)
....+|+||...... .+..+.+.+..+.... ....++|+.+|+..+.+...+
T Consensus 214 -~~~DlVLIDTaG~~~-------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQ-------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred -cCCCEEEEcCCCCCc-------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 334799999975421 1223444444444332 335678888888777666544
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.05 E-value=0.0022 Score=67.48 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=48.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh-----hceeeecC--------cceeeeeccccccchHHHHHhhhccCCeeeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKG--------PELLTMWFGESEANVREIFDKARQSAPCVLFF 393 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~--------~~l~~~~~g~se~~i~~if~~A~~~~p~IL~i 393 (620)
..+++|+.||+|+||||++++++.... ..++.+.- +..+.-........+.+++..+.+..|..|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 357899999999999999999998762 23333321 11111111222226778888888899999999
Q ss_pred ccch
Q 007053 394 DELD 397 (620)
Q Consensus 394 DEiD 397 (620)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9984
No 330
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.05 E-value=0.00045 Score=64.52 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=27.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
+|+|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999988877544
No 331
>PRK05973 replicative DNA helicase; Provisional
Probab=97.04 E-value=0.0043 Score=62.87 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=28.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
|+.+..-+||.|+||+|||+++-.++.+. |.++++++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 66778889999999999999998877644 44454444
No 332
>PRK00625 shikimate kinase; Provisional
Probab=97.03 E-value=0.00047 Score=66.57 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=28.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
+|+|.|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999888765
No 333
>PHA02624 large T antigen; Provisional
Probab=97.01 E-value=0.0013 Score=74.02 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=69.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhh-
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ- 402 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~- 402 (620)
|++..+.+||+||||||||+++.+|++.++...+.++++.-.+. |...-.....+.+||++-.-+-.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 45556689999999999999999999999777777876542111 22211111237778877432210
Q ss_pred cCCCCCCCCCchhHHHHHHhhhhcCCCC------------cceEEEEccCCCCCCCcccccCCCCCCceeeeeC
Q 007053 403 RGSSVGDAGGAADRVLNQLLTEMDGMSA------------KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464 (620)
Q Consensus 403 r~~~~~~~~~~~~rvl~~LL~~ld~~~~------------~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~ 464 (620)
..-..+. ..+ -+..|-..|||..+ ..---.|.|||. ..|+..+.- ||..++.|..
T Consensus 495 ~~Lp~G~---~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQ---GMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCccc---ccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 0000001 110 12334555665411 011123447775 467777766 8888887764
No 334
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.01 E-value=0.0014 Score=65.57 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---h------hceeeecCcceeee---------------------ec--cc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---Q------ANFISVKGPELLTM---------------------WF--GE 371 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~------~~~i~i~~~~l~~~---------------------~~--g~ 371 (620)
|++...-+.|+||||+|||+++..+|... + ..+++++..+-+.. ++ ..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 66777889999999999999999988653 2 45566655432100 00 00
Q ss_pred cccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 372 SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 372 se~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
....+...+... ....+.+|+||-+..+....... ........+.+.+++..|..+....++.||.++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 011112222222 23467899999999886532111 000011224455565555555444556666555
No 335
>PRK04296 thymidine kinase; Provisional
Probab=97.00 E-value=0.002 Score=63.07 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=40.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhh---hhceeeecC----cce---eeeecccc-----ccchHHHHHhhh--ccCCeeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKG----PEL---LTMWFGES-----EANVREIFDKAR--QSAPCVLF 392 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~----~~l---~~~~~g~s-----e~~i~~if~~A~--~~~p~IL~ 392 (620)
-.|++||+|+|||+++..++..+ +..++.++. ... +....|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888766 344444432 110 11111210 112334444432 24567999
Q ss_pred eccchhH
Q 007053 393 FDELDSI 399 (620)
Q Consensus 393 iDEiD~l 399 (620)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999654
No 336
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.97 E-value=0.0015 Score=65.61 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=55.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh----hhceeeecCccee--------------------------eeecc---
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELL--------------------------TMWFG--- 370 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~~~l~--------------------------~~~~g--- 370 (620)
|++....+|+.||||||||+|+..++.+. +-+++++...+-. ..+..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 77788899999999999999998876433 4555555432110 00000
Q ss_pred ----ccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc
Q 007053 371 ----ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 426 (620)
Q Consensus 371 ----~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld 426 (620)
..+..+..+.+......+.+++||-+..+. .... .....+.+..|...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~~-----~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYDD-----PEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSSS-----GGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcCC-----HHHHHHHHHHHHHHHH
Confidence 011112333344445567899999999982 2111 1234556666666663
No 337
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.97 E-value=0.0018 Score=67.03 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=23.0
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+++|.||+|+|||||.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998763
No 338
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.96 E-value=0.002 Score=66.28 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=56.0
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-----hceeee-----cCccee
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISV-----KGPELL 365 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i-----~~~~l~ 365 (620)
+.|+.-+++.+...+...+..+. -..|--+=|||++||||..+++.||+.+- .+++.. +++.-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~- 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA- 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh-
Confidence 56777777777666665433321 12244466899999999999999998762 122211 11110
Q ss_pred eeecccc-ccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 366 TMWFGES-EANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 366 ~~~~g~s-e~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
+++..- ++..+.+-..+...+.++++|||+|.|-
T Consensus 157 -~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 -SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 111111 1112233333445566799999999986
No 339
>PRK13949 shikimate kinase; Provisional
Probab=96.95 E-value=0.00059 Score=65.60 Aligned_cols=31 Identities=39% Similarity=0.585 Sum_probs=28.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.|+|.|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999998888765
No 340
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.95 E-value=0.0022 Score=74.85 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=64.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee----------------eeccccccchHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----------------MWFGESEANVREIFDKAR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~----------------~~~g~se~~i~~if~~A~ 384 (620)
|+++...++|+||||||||+|+..++... +...++++..+-+. ......+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 56778889999999999999997655432 44555555443221 001111222222222334
Q ss_pred ccCCeeeeeccchhHHhhcCCC-C-CC-CCCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 385 QSAPCVLFFDELDSIATQRGSS-V-GD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~-~-~~-~~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
...+.+|+||-+..+.+...-. . ++ ..+...++++++|..|..+....++.+|.|.
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4578999999999998632111 0 11 0112244555666655554444556666554
No 341
>PRK14532 adenylate kinase; Provisional
Probab=96.95 E-value=0.00059 Score=66.36 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=28.2
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
.|+|.||||+||||+|+.||+.+++.++ +..+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 4899999999999999999999876554 4445543
No 342
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.0024 Score=63.42 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=45.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh--------ceeeecC-cceeeeeccc-------------cccchHHHHHhhhc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKG-PELLTMWFGE-------------SEANVREIFDKARQ 385 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~--------~~i~i~~-~~l~~~~~g~-------------se~~i~~if~~A~~ 385 (620)
..+.|+.|||||||||+.|-+|+.+.. .+..++- +++-....|. .+.+-..+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 456899999999999999999987632 2223332 2222111111 12223445566677
Q ss_pred cCCeeeeeccchhH
Q 007053 386 SAPCVLFFDELDSI 399 (620)
Q Consensus 386 ~~p~IL~iDEiD~l 399 (620)
..|-|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 89999999999654
No 343
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.92 E-value=0.00065 Score=65.63 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=27.5
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
|+|.||||+||||+|+.||..+++ ..++..+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence 789999999999999999999875 4455555543
No 344
>PRK14531 adenylate kinase; Provisional
Probab=96.90 E-value=0.00075 Score=65.57 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=28.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
..|+++||||+||||+++.||..+++.+++ +.+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 459999999999999999999998866554 44443
No 345
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0058 Score=66.00 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=58.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh---hceeeecCccee-------ee---------eccccccchHHHHHhhhc-cC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL-------TM---------WFGESEANVREIFDKARQ-SA 387 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~-------~~---------~~g~se~~i~~if~~A~~-~~ 387 (620)
++.++|.||+|+||||++..||..+. ..+..+++.... .. +.......+...+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 57799999999999999999998763 233333332110 01 111233344455544443 23
Q ss_pred CeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 388 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 388 p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
..+||||-..+.. .....+.++...+....+...++|+.+|...
T Consensus 321 ~DvVLIDTaGRs~------------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 321 VDYILIDTAGKNY------------RASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred CCEEEEeCccccC------------cCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 4689999764422 1233456666666544444456666555443
No 346
>PRK06217 hypothetical protein; Validated
Probab=96.88 E-value=0.00074 Score=65.58 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.9
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.|+|.|+||+||||++++|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877654
No 347
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.88 E-value=0.00072 Score=65.17 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=29.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~ 362 (620)
.+-++|.|+||+||||+|+.++..++..++.++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 35689999999999999999999988777665443
No 348
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.88 E-value=0.0023 Score=64.86 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=24.5
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
|+++...+|++||||||||+++..++.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 7788889999999999999999876654
No 349
>PHA02774 E1; Provisional
Probab=96.87 E-value=0.0032 Score=70.73 Aligned_cols=33 Identities=27% Similarity=0.603 Sum_probs=27.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceee-ec
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFIS-VK 360 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~-i~ 360 (620)
...++||||||||||++|.+|++.++..++. ++
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 4689999999999999999999998654443 44
No 350
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.86 E-value=0.06 Score=58.62 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=31.2
Q ss_pred eEEEEccCC-CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC
Q 007053 433 TVFIIGATN-RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 481 (620)
Q Consensus 433 ~viVIatTn-~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~ 481 (620)
+|+++.... ....|..+| |+|.-+.|.+.-.+.+.-+.++..++...
T Consensus 185 HVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 455543332 223466666 44766789999999998888888888553
No 351
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.85 E-value=0.0031 Score=70.28 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.|.|++.+|..+--.+-.-..+... .+..+..--+|||+|.|||||+-+.+.+++-....++.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~-~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPG-GKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCC-CCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 3679999998876555432222110 01112233479999999999999999999877655443
No 352
>PRK13764 ATPase; Provisional
Probab=96.85 E-value=0.0017 Score=73.85 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=43.5
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh---ceeeec-Ccce-----eeeeccccccchHHHHHhhhccCCeeeeeccch
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA---NFISVK-GPEL-----LTMWFGESEANVREIFDKARQSAPCVLFFDELD 397 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~---~~i~i~-~~~l-----~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD 397 (620)
...++|++||+||||||++++++..+.. .+..+. ..++ ...|. ............+....|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 3578999999999999999999988742 222321 1122 22221 111122333344456779999999984
No 353
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.84 E-value=0.0034 Score=70.31 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=61.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCc-cee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGP-ELL 365 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~-~l~ 365 (620)
..+++++|-..+..+.+++++.. +..-+|++||+|+||||+.+++.+++. .+++.+.-+ ++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 35677888777777777766653 223478999999999999998877663 345554321 121
Q ss_pred -----eeecc-ccccchHHHHHhhhccCCeeeeeccchh
Q 007053 366 -----TMWFG-ESEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 366 -----~~~~g-~se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
...+. ..........+.+.+..|.+|++.|+-.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11111 1112445666677778999999999843
No 354
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.81 E-value=0.0022 Score=62.55 Aligned_cols=72 Identities=24% Similarity=0.393 Sum_probs=47.0
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCc-ce-------eeeec------cccccchHHHHHhhhccCCe
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-EL-------LTMWF------GESEANVREIFDKARQSAPC 389 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~-~l-------~~~~~------g~se~~i~~if~~A~~~~p~ 389 (620)
.....++|.||+|+||||++++++..... ..+.+..+ ++ ..-.. +.......+.+..+.+..|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 45678999999999999999999987632 22222211 11 11000 11223466777777788899
Q ss_pred eeeeccch
Q 007053 390 VLFFDELD 397 (620)
Q Consensus 390 IL~iDEiD 397 (620)
+|++.|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999983
No 355
>PTZ00202 tuzin; Provisional
Probab=96.80 E-value=0.022 Score=62.21 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=97.4
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc---eee---
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE---LLT--- 366 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~---l~~--- 366 (620)
..++.|-+....+|...+... ....++-+.|.||+|||||+|++.+...++...+.++... ++.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL 330 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVV 330 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHH
Confidence 346789999999998887631 2233457899999999999999999988886655555431 110
Q ss_pred eecccc--------ccchHHHHHhhhc--cCCeeeee--ccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceE
Q 007053 367 MWFGES--------EANVREIFDKARQ--SAPCVLFF--DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 434 (620)
Q Consensus 367 ~~~g~s--------e~~i~~if~~A~~--~~p~IL~i--DEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~v 434 (620)
.-.|.. -..+.+.+..+.. +...||+| -|- +...|+.++.+.+--.-.-. .+
T Consensus 331 ~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---------------~~l~rvyne~v~la~drr~c-h~ 394 (550)
T PTZ00202 331 KALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---------------SSLQRVYNEVVALACDRRLC-HV 394 (550)
T ss_pred HHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---------------CcHHHHHHHHHHHHccchhh-ee
Confidence 001111 1112222222222 22223333 332 24456666665543221111 11
Q ss_pred EEEccCCCCCCCcc--cccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHH
Q 007053 435 FIIGATNRPDIIDP--ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQ 509 (620)
Q Consensus 435 iVIatTn~~~~Ld~--al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~ 509 (620)
++=. ..+.|.. ..+. |+| .+.+|+.+.++-.+..++.+. .+++..+.+ +-|-+..|+..|+.
T Consensus 395 v~ev---pleslt~~~~~lp--rld-f~~vp~fsr~qaf~y~~h~~d------al~l~~fve-~vgtns~d~del~a 458 (550)
T PTZ00202 395 VIEV---PLESLTIANTLLP--RLD-FYLVPNFSRSQAFAYTQHAID------ALSLEHFVD-VVGTNSNDLDELLA 458 (550)
T ss_pred eeee---hHhhcchhcccCc--cce-eEecCCCCHHHHHHHHhhccc------hHHhhHHHH-hhcCCcccHHHHHH
Confidence 1111 1122221 1222 777 677888888888888777652 233444433 44788899998874
No 356
>PRK13948 shikimate kinase; Provisional
Probab=96.80 E-value=0.0011 Score=64.44 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.4
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.++..|+|.|.+|||||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35688999999999999999999999999998655
No 357
>PRK06547 hypothetical protein; Provisional
Probab=96.80 E-value=0.0012 Score=63.78 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
..+..|++.|++|||||++++.+++.++..+++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45677999999999999999999999887766543
No 358
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.79 E-value=0.00096 Score=61.61 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=27.6
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
|.|.|+||||||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 359
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.78 E-value=0.0012 Score=66.72 Aligned_cols=32 Identities=22% Similarity=0.543 Sum_probs=27.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.||||+||||+|+.||+.++++++++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 45599999999999999999999998776654
No 360
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.78 E-value=0.0031 Score=64.92 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=28.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh----hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~ 360 (620)
|+.+..-++|.||||+|||+++..++... +.++++++
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 56677789999999999999999887654 44444444
No 361
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.78 E-value=0.0047 Score=65.49 Aligned_cols=70 Identities=17% Similarity=0.308 Sum_probs=48.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh-----hceeeec-Ccceee------eeccccccchHHHHHhhhccCCeeeeec
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVK-GPELLT------MWFGESEANVREIFDKARQSAPCVLFFD 394 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~-~~~l~~------~~~g~se~~i~~if~~A~~~~p~IL~iD 394 (620)
...++|+.|++|+||||++++++.... ..++.+. ..++.- .+.....-....+++.+.+..|..|++-
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 357899999999999999999998752 2333332 223221 1111223356778888888999999999
Q ss_pred cc
Q 007053 395 EL 396 (620)
Q Consensus 395 Ei 396 (620)
|+
T Consensus 223 Ei 224 (323)
T PRK13833 223 EV 224 (323)
T ss_pred ec
Confidence 98
No 362
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.77 E-value=0.0015 Score=59.37 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
..+.|+.-+.+.+...+...+..+ .-+.|--+-|+|+||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 357788888888777777644332 11223445599999999999999999986
No 363
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.77 E-value=0.007 Score=61.36 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=73.5
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhc--eeeecCcceeeee---c-----cc---c---ccc-------hHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMW---F-----GE---S---EAN-------VREIFDKA 383 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~--~i~i~~~~l~~~~---~-----g~---s---e~~-------i~~if~~A 383 (620)
.+-.+++.|++|||||+++..+...+... .+.+-++.....| + .. . +.. +.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 35579999999999999999998766432 2222222221111 0 00 0 001 11111111
Q ss_pred hc---cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCcee
Q 007053 384 RQ---SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 460 (620)
Q Consensus 384 ~~---~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i 460 (620)
.. ..+++|+||++..- ....+.+.++++.-. .-++.+|.++.....|++.++. -.+.++
T Consensus 92 ~~~k~~~~~LiIlDD~~~~------------~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK------------KLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCCc------------hhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 23689999997320 012344555554222 2356777778878889999865 566666
Q ss_pred eeeCCChhHHHHHHHHh
Q 007053 461 YIPLPDEESRLQIFKAC 477 (620)
Q Consensus 461 ~~~~P~~~eR~~Il~~~ 477 (620)
-++ .+..+...|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 565 4666666666554
No 364
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.77 E-value=0.00097 Score=64.84 Aligned_cols=33 Identities=39% Similarity=0.648 Sum_probs=27.1
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
|+|.||||+|||++|+.||..+++.++. ..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 8999999999999999999998766554 44444
No 365
>PRK14530 adenylate kinase; Provisional
Probab=96.77 E-value=0.0011 Score=66.22 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=27.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+.|+|.||||+||||+++.||+.++++++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3599999999999999999999998776644
No 366
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.77 E-value=0.00098 Score=62.22 Aligned_cols=27 Identities=37% Similarity=0.631 Sum_probs=23.9
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
++|+|+||+||||+|+.++..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999776554
No 367
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.76 E-value=0.0026 Score=68.70 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=47.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh-----hceeeecCc-cee-----------eeeccccccchHHHHHhhhccCCee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGP-ELL-----------TMWFGESEANVREIFDKARQSAPCV 390 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~~-~l~-----------~~~~g~se~~i~~if~~A~~~~p~I 390 (620)
...+|++||+|+||||+++++...+. .+++.+.-+ ++. ...+|.........++.+.+..|.+
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence 34589999999999999999988763 344444322 211 1112222234566777777889999
Q ss_pred eeeccchh
Q 007053 391 LFFDELDS 398 (620)
Q Consensus 391 L~iDEiD~ 398 (620)
|++.|+-.
T Consensus 229 I~vGEiRd 236 (372)
T TIGR02525 229 IGVGEIRD 236 (372)
T ss_pred EeeCCCCC
Confidence 99999843
No 368
>PRK06762 hypothetical protein; Provisional
Probab=96.75 E-value=0.00096 Score=63.47 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=27.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
+.-++|+|+||+||||+|+.+++.++..++.++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 4568999999999999999999998655555543
No 369
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.74 E-value=0.0041 Score=62.13 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred ceeeeecCCCChhHHHHHHHHh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~ 350 (620)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 370
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.73 E-value=0.0056 Score=66.28 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.4
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.....++|.||||+|||+|++.+++...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 3466799999999999999999998754
No 371
>PLN02200 adenylate kinase family protein
Probab=96.71 E-value=0.0014 Score=66.51 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
..+..++|.|||||||||+|+.+|..+++. .+++.+++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 445678999999999999999999988754 456666653
No 372
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.70 E-value=0.0032 Score=62.15 Aligned_cols=137 Identities=24% Similarity=0.276 Sum_probs=62.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCC
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD 409 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~ 409 (620)
-++|+||+|||||.+|-++|+.++.+++..+.-.......-.+.+.... +.+ ..+ =+||||-..-- +.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~---el~-~~~-RiyL~~r~l~~-------G~ 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPS---ELK-GTR-RIYLDDRPLSD-------GI 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SG---GGT-T-E-EEES----GGG--------S
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHH---HHc-ccc-eeeeccccccC-------CC
Confidence 3789999999999999999999999999887654433221112111111 111 111 37787643211 11
Q ss_pred CCCchhHHHHHHhhhhcCCCCcceEEEEccCCC-CCCC--cccccCCCCCCceeeeeCCChhHHHHHHHHhhccC
Q 007053 410 AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-PDII--DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 481 (620)
Q Consensus 410 ~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~-~~~L--d~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~ 481 (620)
-......+.|+..++.....+.+++=+-+.. ...+ ++-...+.+. .+..++.|+.+.-..-.+...+++
T Consensus 71 --i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w-~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 71 --INAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRW-HIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp ----HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEE-EEEE-----HHHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeE-EEEEEECCChHHHHHHHHHHHHHh
Confidence 2344566667777777776555555454421 0000 1111111122 356678888876666555555444
No 373
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0011 Score=62.41 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=25.9
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
|-+.|||||||||+|+.||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6689999999999999999999999875
No 374
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.70 E-value=0.0011 Score=62.78 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=23.7
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
++|.||+||||||+|+.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999875554
No 375
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0012 Score=63.33 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=37.2
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDK 382 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~ 382 (620)
.+|+|.|++|+||||+.++||+.++.+|+..+. ++.+.. ...+.++|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~--~Ie~~~---g~sI~eIF~~ 51 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ--EIEKRT---GMSIAEIFEE 51 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH--HHHHHH---CcCHHHHHHH
Confidence 569999999999999999999999999987652 332222 2456666655
No 376
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.69 E-value=0.0024 Score=61.90 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=43.1
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCccee--eeecccccc--chHHHHHhhhccCCeeeeeccchh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL--TMWFGESEA--NVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~--~~~~g~se~--~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
+.+...+.|.||+|+|||||++.++..... --+.+++..+. ..... ... .-+-.+..+....|.++++||--.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-LSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-CCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 356677999999999999999999986521 11233322111 11100 111 122233444456789999999643
No 377
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.69 E-value=0.0015 Score=62.86 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=29.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
...|+|.||+|+|||++++.+|..++.+|+..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 457999999999999999999999998877665
No 378
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.68 E-value=0.0035 Score=56.02 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=20.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
++++++||+|+|||+++-.++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888877665
No 379
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0032 Score=61.59 Aligned_cols=25 Identities=40% Similarity=0.703 Sum_probs=22.7
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhc
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
++|+|+||+|||++|+.+|+++.-.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 7899999999999999999998543
No 380
>PRK10436 hypothetical protein; Provisional
Probab=96.68 E-value=0.0052 Score=68.29 Aligned_cols=94 Identities=20% Similarity=0.336 Sum_probs=62.3
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCc-ce-
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGP-EL- 364 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~-~l- 364 (620)
..+++++|-.....+.+++++.. +...+|++||+|+||||+..++..++. .+++.+.-+ ++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 34677888777777777766653 345589999999999999888777663 344444311 11
Q ss_pred ----eeeecc-ccccchHHHHHhhhccCCeeeeeccch
Q 007053 365 ----LTMWFG-ESEANVREIFDKARQSAPCVLFFDELD 397 (620)
Q Consensus 365 ----~~~~~g-~se~~i~~if~~A~~~~p~IL~iDEiD 397 (620)
....++ .........++.+.+..|.+|++.|+-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 111111 122346677777788899999999984
No 381
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.66 E-value=0.004 Score=61.41 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=57.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh-----ceeeecCcce-----e-------e-e-eccccc----cchHHHHHhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPEL-----L-------T-M-WFGESE----ANVREIFDKAR 384 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~-----~~i~i~~~~l-----~-------~-~-~~g~se----~~i~~if~~A~ 384 (620)
|+-++|.||+|+||||.+-.+|..+.. -++..+..-. + + . +....+ ..+++.++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 466899999999999998888877632 2333332211 0 0 1 111111 12334455554
Q ss_pred ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 385 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
...-.+|+||-.... ......+.++-..++...+....+|+.++...+.++
T Consensus 81 ~~~~D~vlIDT~Gr~------------~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS------------PRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS------------STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc------------hhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 444569999975432 122334444444333334445667777776555554
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.65 E-value=0.004 Score=60.29 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
.+.+...+.|.||+|+|||||.++++.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 345667799999999999999999964
No 383
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.64 E-value=0.0046 Score=74.49 Aligned_cols=183 Identities=16% Similarity=0.238 Sum_probs=96.1
Q ss_pred cccccccchHHHHHHHHHh--hcCcCC---ChhhhhhcCCCCCceeeeecCCCChhHHH-HHHHHhhhhhceeeecCcce
Q 007053 291 VNWEDIGGLENVKRELQET--VQYPVE---HPEKFEKFGMSPSKGVLFYGPPGCGKTLL-AKAIANECQANFISVKGPEL 364 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~--l~~pl~---~~~~~~~~g~~~~~~vLL~GppGtGKT~L-AralA~~l~~~~i~i~~~~l 364 (620)
..|..|.|.+---.++... +.-|.. .-+.|-...++..++++++||||+|||+| ..++-+++-..++.+|-+.-
T Consensus 1452 ~~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~ 1531 (3164)
T COG5245 1452 TNNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC 1531 (3164)
T ss_pred ecccccCCceechhhhcccCCeecccccchhHHHHHHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccc
Confidence 3577777765444444321 111211 11223334456678999999999999996 55676777667776664321
Q ss_pred eeeeccccccchHHHHHhhhc-----------cC----CeeeeeccchhHHhhcCCCCCCCCCchhHHHHH--Hhhhhc-
Q 007053 365 LTMWFGESEANVREIFDKARQ-----------SA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ--LLTEMD- 426 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~-----------~~----p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~--LL~~ld- 426 (620)
.+...+-.+++.-.. .+ --|||.|||. |...+.-...+.--..+.++.. +..-+.
T Consensus 1532 ------t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~ 1604 (3164)
T COG5245 1532 ------TMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAV 1604 (3164)
T ss_pred ------cCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhh
Confidence 111111111111110 01 1489999998 4432222111110111122211 111110
Q ss_pred CCCCcceEEEEccCCCCCCCc-----ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCC
Q 007053 427 GMSAKKTVFIIGATNRPDIID-----PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV 483 (620)
Q Consensus 427 ~~~~~~~viVIatTn~~~~Ld-----~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l 483 (620)
....-.++++.+++|.+...- ..+.| -...+++..|......+|.+.++....+
T Consensus 1605 ~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l 1663 (3164)
T COG5245 1605 SWVTICGIILYGACNPGTDEGRVKYYERFIR---KPVFVFCCYPELASLRNIYEAVLMGSYL 1663 (3164)
T ss_pred hHhhhcceEEEccCCCCCCcccCccHHHHhc---CceEEEecCcchhhHHHHHHHHHHHHHH
Confidence 011234789999999876432 23332 2357889999999999999888765443
No 384
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.64 E-value=0.0021 Score=65.66 Aligned_cols=73 Identities=30% Similarity=0.566 Sum_probs=49.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHh------hhhhceeeecCcceeee-----eccccccchHHHHHhhh--------
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIAN------ECQANFISVKGPELLTM-----WFGESEANVREIFDKAR-------- 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~------~l~~~~i~i~~~~l~~~-----~~g~se~~i~~if~~A~-------- 384 (620)
.+.....+||.||.|.||+.||+.+.. .+..+|+.++|..|.+. .+|+ ++..|.-|+
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gllr 279 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGLLR 279 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhhhc
Confidence 334556799999999999999998864 34668999999887532 1222 222222222
Q ss_pred ccCCeeeeeccchhHH
Q 007053 385 QSAPCVLFFDELDSIA 400 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~ 400 (620)
.....+||+|||..|.
T Consensus 280 sadggmlfldeigelg 295 (531)
T COG4650 280 SADGGMLFLDEIGELG 295 (531)
T ss_pred cCCCceEehHhhhhcC
Confidence 1223599999998875
No 385
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.63 E-value=0.0061 Score=62.75 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
|+++...+|++||||||||+++-.++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5677788999999999999999988764
No 386
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.63 E-value=0.0058 Score=69.88 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=62.7
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCc-----
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGP----- 362 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~----- 362 (620)
..++++|-.....+.+++++.. +...||++||+|+||||+..++.+.++ .+++.+.-+
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 4677888777777777766653 234588999999999999988887763 344443322
Q ss_pred -ceeeeecc-ccccchHHHHHhhhccCCeeeeeccchh
Q 007053 363 -ELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 363 -~l~~~~~g-~se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
.+....+. .........++.+.+..|.+|++.|+-.
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 11111111 1223566777778888999999999854
No 387
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.62 E-value=0.0016 Score=62.21 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=28.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
..++|.|++|||||++++.||..++.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 45899999999999999999999999887553
No 388
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.62 E-value=0.0034 Score=66.30 Aligned_cols=74 Identities=19% Similarity=0.477 Sum_probs=49.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeec-Ccce-------eeeec-----cccccchHHHHHhhhccCC
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVK-GPEL-------LTMWF-----GESEANVREIFDKARQSAP 388 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~-~~~l-------~~~~~-----g~se~~i~~if~~A~~~~p 388 (620)
.+....++++.||+|+||||++++++..+.. ..+.+. ..++ ..... +...-...+++..+.+..|
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 3455788999999999999999999987632 222221 1111 11111 1112346778888888899
Q ss_pred eeeeeccch
Q 007053 389 CVLFFDELD 397 (620)
Q Consensus 389 ~IL~iDEiD 397 (620)
.+|++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 999999984
No 389
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.62 E-value=0.0022 Score=69.65 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=54.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh-ceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCC
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 405 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~-~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~ 405 (620)
...++++.||+|||||+++.+++...-+ .--.++.+.|+... .. ..+.. -....+|+|||+..+.-.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L----~~---~~lg~--v~~~DlLI~DEvgylp~~--- 275 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNI----ST---RQIGL--VGRWDVVAFDEVATLKFA--- 275 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHH----HH---HHHhh--hccCCEEEEEcCCCCcCC---
Confidence 3578999999999999999998876211 10222223332111 00 11111 123469999999876522
Q ss_pred CCCCCCCchhHHHHHHhhhhcCC---------CCcceEEEEccCCC
Q 007053 406 SVGDAGGAADRVLNQLLTEMDGM---------SAKKTVFIIGATNR 442 (620)
Q Consensus 406 ~~~~~~~~~~rvl~~LL~~ld~~---------~~~~~viVIatTn~ 442 (620)
....+++-+...|... .....+++++-+|.
T Consensus 276 -------~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 276 -------KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred -------chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 2233555565555432 22335666675554
No 390
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.62 E-value=0.0019 Score=61.59 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCccee--------e---eecccccc--chHHHHHhhhccCC
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELL--------T---MWFGESEA--NVREIFDKARQSAP 388 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~--------~---~~~g~se~--~i~~if~~A~~~~p 388 (620)
.+.+...+.|.||+|+|||+|.+.++..... --+.+++..+. . .|+.+... .-+-.+..|....|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 4566778999999999999999999976521 11222221111 0 01110111 12223455556788
Q ss_pred eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 389 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 389 ~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
.+|++||-..-. .....+.+..++..+. .. +..+|.+|+..+
T Consensus 102 ~illlDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 102 RLLILDEPTAAL----------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred CEEEEECCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 999999964321 2233444555555442 12 234455666554
No 391
>PRK14527 adenylate kinase; Provisional
Probab=96.61 E-value=0.0016 Score=63.58 Aligned_cols=32 Identities=41% Similarity=0.619 Sum_probs=27.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.+.-++++||||+||||+|+.++..++...+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 45679999999999999999999988765443
No 392
>PRK13946 shikimate kinase; Provisional
Probab=96.61 E-value=0.0016 Score=63.39 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=29.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
++.|+|.|++|||||++++.||+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999987655
No 393
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.60 E-value=0.0026 Score=67.79 Aligned_cols=71 Identities=21% Similarity=0.394 Sum_probs=48.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh--ceeee-cCccee--------eee-----ccccccchHHHHHhhhccCCee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA--NFISV-KGPELL--------TMW-----FGESEANVREIFDKARQSAPCV 390 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i-~~~~l~--------~~~-----~g~se~~i~~if~~A~~~~p~I 390 (620)
..+++|++|++|+||||++++++..... .++.+ +..++. .-. .+...-...++++.+.+..|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4678999999999999999999987742 23322 111221 101 1122335678888888999999
Q ss_pred eeeccch
Q 007053 391 LFFDELD 397 (620)
Q Consensus 391 L~iDEiD 397 (620)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 394
>PRK14528 adenylate kinase; Provisional
Probab=96.59 E-value=0.0017 Score=63.39 Aligned_cols=31 Identities=39% Similarity=0.656 Sum_probs=26.7
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+.+++.||||+|||++++.++..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999988766543
No 395
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.59 E-value=0.002 Score=68.14 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=32.0
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
+.+...|+|.|+||||||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456778999999999999999999999999998544
No 396
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.59 E-value=0.011 Score=61.32 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.2
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+++.++|.||+|+||||++..+|..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 346778899999999999999998766
No 397
>PRK13808 adenylate kinase; Provisional
Probab=96.58 E-value=0.0048 Score=65.45 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=27.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.|+|+||||+|||++++.|+..+++. .++..+++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 48999999999999999999988764 44445554
No 398
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0018 Score=62.86 Aligned_cols=33 Identities=33% Similarity=0.663 Sum_probs=26.4
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
.|+|.||||+||||+|+.|++.+ ++.+++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHH
Confidence 48999999999999999999994 4555554444
No 399
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.57 E-value=0.012 Score=70.77 Aligned_cols=153 Identities=19% Similarity=0.255 Sum_probs=79.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh-hceeeecCccee------------eeec-c-----------ccccc----hHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ-ANFISVKGPELL------------TMWF-G-----------ESEAN----VRE 378 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~-~~~i~i~~~~l~------------~~~~-g-----------~se~~----i~~ 378 (620)
.+-++++||+|.|||+++...+...+ ..+++++..+-- .... + ..... +..
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 45699999999999999999876654 223344322210 0000 0 00011 222
Q ss_pred HHHhhhc-cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc-ccccCCCCC
Q 007053 379 IFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID-PALLRPGRL 456 (620)
Q Consensus 379 if~~A~~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld-~al~rpgRf 456 (620)
++..... ..|.+|+|||++.+.. ......+..|+..+ . ....+|| ++...-.+. ..+.. -
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~----------~~~~~~l~~l~~~~---~-~~~~lv~-~sR~~~~~~~~~l~~---~ 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN----------PEIHEAMRFFLRHQ---P-ENLTLVV-LSRNLPPLGIANLRV---R 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC----------hHHHHHHHHHHHhC---C-CCeEEEE-EeCCCCCCchHhHHh---c
Confidence 3333222 5789999999998631 12233445454432 2 2233444 443311121 11111 1
Q ss_pred Cceeeee----CCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCC
Q 007053 457 DQLIYIP----LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 500 (620)
Q Consensus 457 ~~~i~~~----~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~s 500 (620)
+..+.+. ..+.++-.+++...+... + ....+..+.+.|.|+.
T Consensus 174 ~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWA 219 (903)
T ss_pred CcceecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChH
Confidence 2234444 668888888887654322 2 2334677778888774
No 400
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.57 E-value=0.0044 Score=61.17 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCCceeeeecCCCChhHHHHHHHHh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
.+...++|+||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 4456799999999999999999993
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.015 Score=62.60 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=38.3
Q ss_pred chHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 298 Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+.+...+.+.+...+..+..+ .+.+++.++|.||+|+||||++..+|..+
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667777777777655444322 23567789999999999999999999766
No 402
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.54 E-value=0.01 Score=57.12 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee----------------e-ccccccchHHHHHhhhccCCeeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM----------------W-FGESEANVREIFDKARQSAPCVLF 392 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~----------------~-~g~se~~i~~if~~A~~~~p~IL~ 392 (620)
.+|+.|+||+|||++|..++..++.+++++........ | .-+....+.+++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999988877777654432211 0 000111344444331 12356899
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
||-+..|....-.. .+ .......+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~-~~-~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE-EG-EEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc-cc-hHHHHHHHHHHHHHHHc
Confidence 99999987543211 00 01223445556666553
No 403
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.54 E-value=0.0025 Score=64.35 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=29.2
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh----hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~ 360 (620)
|+.+..-++|.|+||+|||+++..++... +.++++++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 67778889999999999999999887654 45555554
No 404
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00094 Score=70.44 Aligned_cols=70 Identities=31% Similarity=0.359 Sum_probs=49.1
Q ss_pred cccchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccH-----H-------HHhhhccChHHHHHhhccC
Q 007053 209 DVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDA-----E-------ILNSMAVTDEHFKTALGTS 276 (620)
Q Consensus 209 ~ig~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~-----~-------~l~~~~v~~~df~~al~~~ 276 (620)
+--++.++|.+|.||+|.||..+|+.|++..+|..+..- ......+. . ....-.++++||..+...+
T Consensus 281 ~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~-~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 281 DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE-TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc-ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 334678999999999999999999999999999888763 11100000 0 0113557788888888766
Q ss_pred Ccc
Q 007053 277 NPS 279 (620)
Q Consensus 277 ~ps 279 (620)
.++
T Consensus 360 ~~~ 362 (386)
T KOG0737|consen 360 SAS 362 (386)
T ss_pred hhH
Confidence 554
No 405
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.095 Score=53.04 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=124.5
Q ss_pred CceeeeecCCC-ChhHHHHHHHHhhhhhceeee-cCcceeeeecc---------ccccchHHHHHhhh----ccCCeeee
Q 007053 328 SKGVLFYGPPG-CGKTLLAKAIANECQANFISV-KGPELLTMWFG---------ESEANVREIFDKAR----QSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppG-tGKT~LAralA~~l~~~~i~i-~~~~l~~~~~g---------~se~~i~~if~~A~----~~~p~IL~ 392 (620)
.+..||.|..+ +||..++..++..+-..-+.. +.+++.--... -.-..+|++-+.+. .+..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 56799999997 999999888887663322111 12232211000 01233555544432 34457999
Q ss_pred eccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHH
Q 007053 393 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQ 472 (620)
Q Consensus 393 iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~ 472 (620)
|+++|.+.. ...+.||..++. +..++++|..|+.++.|.|.+++ |+. .+.|+.|....-.+
T Consensus 95 I~~ae~mt~--------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELMNL--------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNE 155 (263)
T ss_pred EechHHhCH--------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHH
Confidence 999999863 356788998885 34456666677778899999988 885 88899998877777
Q ss_pred HHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhH
Q 007053 473 IFKACLRKSPVSKDVDLRALAKYTQGFSGADITEIC--QRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKA 550 (620)
Q Consensus 473 Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~--~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~ 550 (620)
+...++.... .+..++-|.+.+. -|.+... -++++.-+.+.+.... .-.+..
T Consensus 156 ~~~~~~~p~~--~~~~l~~i~~~~~----~d~~~w~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 209 (263)
T PRK06581 156 LYSQFIQPIA--DNKTLDFINRFTT----KDRELWLDFIDNLLLLMNRILKKSA--------------------NFNIEL 209 (263)
T ss_pred HHHHhccccc--ccHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhc--------------------CCchHH
Confidence 7776664333 2333444544432 2222221 2344444444332110 001222
Q ss_pred HHHHHH-HHHHhhcCChHHHHHHHHHHHHHhhhcCC
Q 007053 551 VHFEES-MKYARRSVSDADIRKYQAFAQTLQQSRGF 585 (620)
Q Consensus 551 ~df~~A-l~~~~psvs~~di~~~e~~k~~l~~~~~~ 585 (620)
.+.+.- ..+....-+..-++.|.++++-+..++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (263)
T PRK06581 210 LDLENKIFNKLSNRNPSYLLQKFTDIKKLIYNTIDY 245 (263)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHhccccc
Confidence 233322 22232222338899999999999998876
No 406
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.50 E-value=0.0019 Score=62.30 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=24.9
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
+-++|.||||+||||+++.++..++..++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 45889999999999999999998875544
No 407
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0018 Score=61.72 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=27.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.++++|.|||||||+++.|+ +++.++++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48899999999999999999 8998888765
No 408
>PRK02496 adk adenylate kinase; Provisional
Probab=96.49 E-value=0.002 Score=62.50 Aligned_cols=30 Identities=37% Similarity=0.630 Sum_probs=26.0
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.++|.||||+|||++++.|+..++++.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999988765543
No 409
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.49 E-value=0.0051 Score=65.21 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=48.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh-----hhceeeec-Cccee------eeeccccccchHHHHHhhhccCCeeeeec
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVK-GPELL------TMWFGESEANVREIFDKARQSAPCVLFFD 394 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~-~~~l~------~~~~g~se~~i~~if~~A~~~~p~IL~iD 394 (620)
...++++.|++|+|||+++++++... ...++.+. ..++. ..+....+....++++.+.+..|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46789999999999999999999764 12233221 12221 11111224467888888999999999999
Q ss_pred cch
Q 007053 395 ELD 397 (620)
Q Consensus 395 EiD 397 (620)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 984
No 410
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.48 E-value=0.011 Score=56.61 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=25.3
Q ss_pred eeeecCCCChhHHHHHHHHhhh---hhceeeecCc
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 362 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~ 362 (620)
+++.||||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998776 4455555544
No 411
>PRK04040 adenylate kinase; Provisional
Probab=96.48 E-value=0.0022 Score=62.80 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh--hhcee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC--QANFI 357 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l--~~~~i 357 (620)
+..++++|+|||||||+++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999999999998 44443
No 412
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.48 E-value=0.0063 Score=74.04 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=89.0
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce------eeeeccccccch---HHHHHhhhccCCeeeeeccchhH
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWFGESEANV---REIFDKARQSAPCVLFFDELDSI 399 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l------~~~~~g~se~~i---~~if~~A~~~~p~IL~iDEiD~l 399 (620)
-.+||.||.-+|||+++..+|++.|..|++|+..+- ++.|+......+ ..++-.|.+.. .-|++||+..-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 469999999999999999999999999999987653 344443333321 23444444433 37889998543
Q ss_pred HhhcCCCCCCCCCchhHHHHHHhhhhcCC------------CCcceEEEEccCCCCC------CCcccccCCCCCCceee
Q 007053 400 ATQRGSSVGDAGGAADRVLNQLLTEMDGM------------SAKKTVFIIGATNRPD------IIDPALLRPGRLDQLIY 461 (620)
Q Consensus 400 ~~~r~~~~~~~~~~~~rvl~~LL~~ld~~------------~~~~~viVIatTn~~~------~Ld~al~rpgRf~~~i~ 461 (620)
. ..++..|-.++|.. .+...+.++||-|.|. .|..|++. ||- .++
T Consensus 968 p--------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~h 1030 (4600)
T COG5271 968 P--------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMH 1030 (4600)
T ss_pred c--------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhh
Confidence 2 12344444444432 2345678888888775 36778876 885 667
Q ss_pred eeCCChhHHHHHHHHhhc
Q 007053 462 IPLPDEESRLQIFKACLR 479 (620)
Q Consensus 462 ~~~P~~~eR~~Il~~~l~ 479 (620)
|.--...+...||+..++
T Consensus 1031 FddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1031 FDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred cccCcHHHHHHHHhccCc
Confidence 776677788888877653
No 413
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.47 E-value=0.0059 Score=62.31 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=26.0
Q ss_pred eeeecCCCChhHHHHHHHHhhhh---hceeeecCc
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQ---ANFISVKGP 362 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~ 362 (620)
|+|+|+||+||||+|+.++..+. .+++.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 78999999999999999999874 455555543
No 414
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.45 E-value=0.002 Score=63.97 Aligned_cols=33 Identities=42% Similarity=0.646 Sum_probs=27.1
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
|+|.||||+||||+|+.||..+++.+++ ..+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7999999999999999999988766554 34444
No 415
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.43 E-value=0.006 Score=56.95 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=43.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCcceeeeecc-ccccc-hHHHHHhhhccCCeeeeeccchh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFG-ESEAN-VREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~~~~~g-~se~~-i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
.+.+...+.|.||+|+|||+|+++++..... --+.++....+ .|+. -+... -+-.+..|....|.++++||-..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i-~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEE-EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4456778999999999999999999986531 11222221111 1111 11111 12223445556788999999643
No 416
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.43 E-value=0.0021 Score=57.70 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.9
Q ss_pred eeeecCCCChhHHHHHHHHhhh
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l 352 (620)
|+|.|+||+||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 417
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.40 E-value=0.0082 Score=64.68 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=45.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh------hceeeecCc-ceeee-------e-----ccccccchHHHHHhhhccC
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGP-ELLTM-------W-----FGESEANVREIFDKARQSA 387 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~------~~~i~i~~~-~l~~~-------~-----~g~se~~i~~if~~A~~~~ 387 (620)
+...++++||+|+||||+++++++.+. .+++.+.-+ ++.-. . ++.........++.+.+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 356699999999999999999998762 233333211 11100 0 1111123455566677788
Q ss_pred Ceeeeeccch
Q 007053 388 PCVLFFDELD 397 (620)
Q Consensus 388 p~IL~iDEiD 397 (620)
|.+|++.|+.
T Consensus 213 Pd~i~vGEiR 222 (358)
T TIGR02524 213 PHAILVGEAR 222 (358)
T ss_pred CCEEeeeeeC
Confidence 9999999974
No 418
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.40 E-value=0.0067 Score=59.79 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.9
Q ss_pred CCC-ceeeeecCCCChhHHHHHHHH
Q 007053 326 SPS-KGVLFYGPPGCGKTLLAKAIA 349 (620)
Q Consensus 326 ~~~-~~vLL~GppGtGKT~LAralA 349 (620)
.+. +.++|+||.|+|||+|.+.++
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 344 469999999999999999988
No 419
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.40 E-value=0.0038 Score=66.77 Aligned_cols=73 Identities=19% Similarity=0.419 Sum_probs=49.1
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeec-Cccee-------ee-e----ccccccchHHHHHhhhccCCe
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVK-GPELL-------TM-W----FGESEANVREIFDKARQSAPC 389 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~-~~~l~-------~~-~----~g~se~~i~~if~~A~~~~p~ 389 (620)
+...+++|+.||+|+||||++++++..... .++.+. ..++. .. + .+...-....++..+.+..|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 345788999999999999999999987632 233321 11221 00 1 011223466788888888999
Q ss_pred eeeeccch
Q 007053 390 VLFFDELD 397 (620)
Q Consensus 390 IL~iDEiD 397 (620)
.|++-|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999973
No 420
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.39 E-value=0.018 Score=63.92 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=78.9
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcC--CCCCceeeeecCCCChhHHHHHHHHhhhhhceeee-cCcc---eeeeec
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFG--MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGPE---LLTMWF 369 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g--~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i-~~~~---l~~~~~ 369 (620)
|.|.+.+|+.+.=++..-. +..-.-| +..--+|||.|.|-+.|+-|.|.+.+.....+-.- .++. |..-..
T Consensus 303 I~GH~~vKkAillLLlGGv---Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 303 IYGHDYVKKAILLLLLGGV---EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred cccHHHHHHHHHHHHhccc---eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 6789999988865554422 1111111 22334799999999999999999987653221110 0111 100000
Q ss_pred cccccchHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc--CC--CCcceEEEEccCCCCC
Q 007053 370 GESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD--GM--SAKKTVFIIGATNRPD 444 (620)
Q Consensus 370 g~se~~i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld--~~--~~~~~viVIatTn~~~ 444 (620)
-..+..-+.+=.-|. -....|++|||+|.+.... --+..+++.|=-..+- |+ .-+.++-|+|+.|...
T Consensus 380 tD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiD-------RvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLADRGVVCIDEFDKMSDID-------RVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred eccccchhhhhcCceEEccCceEEehhcccccchh-------HHHHHHHHhcceEEeEeccchhhhccceeeeeecCccc
Confidence 011111122111111 1223599999999985210 0011222222111111 11 1244688999998664
Q ss_pred -------------CCcccccCCCCCCceeee
Q 007053 445 -------------IIDPALLRPGRLDQLIYI 462 (620)
Q Consensus 445 -------------~Ld~al~rpgRf~~~i~~ 462 (620)
-|+..|++ |||..+-+
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred cccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 26778888 99955443
No 421
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.39 E-value=0.0025 Score=63.57 Aligned_cols=34 Identities=38% Similarity=0.606 Sum_probs=27.7
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.|+++||||+|||++++.||..+++.++. ..+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 48999999999999999999998865554 44454
No 422
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.38 E-value=0.011 Score=56.80 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=46.1
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee----------------e-ccccccchHHHHHhhhccCCeeeee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM----------------W-FGESEANVREIFDKARQSAPCVLFF 393 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~----------------~-~g~se~~i~~if~~A~~~~p~IL~i 393 (620)
+|+.|++|+|||++|..++...+.+.+++....-... | ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887767777654332210 0 0111223444443222 4569999
Q ss_pred ccchhHHhhc
Q 007053 394 DELDSIATQR 403 (620)
Q Consensus 394 DEiD~l~~~r 403 (620)
|-+..+....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999988654
No 423
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.37 E-value=0.0033 Score=68.61 Aligned_cols=60 Identities=33% Similarity=0.422 Sum_probs=49.1
Q ss_pred CcccccchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccc
Q 007053 206 GYDDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALR 282 (620)
Q Consensus 206 ~~~~ig~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r 282 (620)
.+..-..+..||..|.||+|+||.++|++|++.|+++.. -.|+.+||..|+..+.++...
T Consensus 319 ~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~-----------------~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 319 NLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR-----------------TEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhccccc
Confidence 333335688899999999999999999999999998631 258899999999998877543
No 424
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.37 E-value=0.016 Score=61.53 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
..+.-++|.||+|+||||++..+|..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 346778999999999999999999876
No 425
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.36 E-value=0.0079 Score=59.49 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
+....-+.|.||+|||||||.|++..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34566799999999999999999975
No 426
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.34 E-value=0.0057 Score=64.84 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=30.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---------hhceeeecCcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE 363 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---------~~~~i~i~~~~ 363 (620)
|++...-++|+||||||||+++-.+|... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56777889999999999999999998653 23566666544
No 427
>PRK06696 uridine kinase; Validated
Probab=96.33 E-value=0.0043 Score=62.26 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
.+.-|.+.|++|+||||+|+.|+..+ +.+++.+...++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 45678999999999999999999998 4566666655543
No 428
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.30 E-value=0.0087 Score=59.30 Aligned_cols=24 Identities=50% Similarity=0.602 Sum_probs=19.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
.-+.+.||.|||||+||-+.|.++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999988655
No 429
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.29 E-value=0.022 Score=60.01 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhc
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
.++..|.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 457789999999999999999998877433
No 430
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.29 E-value=0.012 Score=64.93 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=63.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc---eeeecC-----
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKG----- 361 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~---~i~i~~----- 361 (620)
...++++|......+.+++++.. |..-+|++||.|+|||+...++.++++.+ ++.+.-
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~ 299 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ 299 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee
Confidence 45678888888888888888775 23447889999999999999999888543 333321
Q ss_pred -cceeeeeccc-cccchHHHHHhhhccCCeeeeeccchh
Q 007053 362 -PELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 362 -~~l~~~~~g~-se~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
+.+..--+.. ..-.....++...+..|.||++.||-.
T Consensus 300 ~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 300 LPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred cCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 1111111111 112245556666678899999999954
No 431
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.28 E-value=0.0068 Score=63.97 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---------hhceeeecCcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE 363 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---------~~~~i~i~~~~ 363 (620)
|++...-++|+||||||||+++-.+|... +...++|+..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56667778999999999999999988653 22566666544
No 432
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.28 E-value=0.0092 Score=63.13 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
|++...-..|+||||||||+|+..+|-
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 677778899999999999999988774
No 433
>PF13245 AAA_19: Part of AAA domain
Probab=96.28 E-value=0.005 Score=51.10 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=17.2
Q ss_pred ceeeeecCCCChhH-HHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKT-LLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT-~LAralA~~l 352 (620)
+-+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34666999999999 5555555554
No 434
>PRK04328 hypothetical protein; Provisional
Probab=96.27 E-value=0.0097 Score=60.87 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=24.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
|+++...+|++||||||||+|+..++.+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 6777888999999999999998876654
No 435
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.014 Score=63.72 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+..++|.||+|+||||++..+|..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35568999999999999999999754
No 436
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.26 E-value=0.0089 Score=59.94 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.+....-+.|.||+|||||||...++.-
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3455677999999999999999998854
No 437
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.25 E-value=0.0049 Score=66.29 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=21.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l 352 (620)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 438
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0043 Score=58.49 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=25.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+.+...+.|.||+|+|||+|+++++..+.
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345667899999999999999999998663
No 439
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.24 E-value=0.0028 Score=59.43 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=25.9
Q ss_pred eecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 333 FYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 333 L~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
|.||||+|||++|+.||.++++ ..++..+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHH
Confidence 5799999999999999998865 45555555543
No 440
>PRK13695 putative NTPase; Provisional
Probab=96.23 E-value=0.023 Score=54.60 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=20.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l 352 (620)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988765
No 441
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.22 E-value=0.011 Score=59.17 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=29.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecC
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 361 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~ 361 (620)
|+++...+++.|+||+|||+++..++.+. +-+.++++.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67778889999999999999999887543 444544443
No 442
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.22 E-value=0.0032 Score=68.72 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=42.6
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCC
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSN 277 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ 277 (620)
.+.++|..|+||+||||.++|++|++.|+++.. ..|+++||..|+..+.
T Consensus 339 d~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~-----------------~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 339 DLEDFVSRPEKISAADIAAICQEAGMQAVRKNR-----------------YVILPKDFEKGYKTVV 387 (398)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHH
Confidence 577899999999999999999999999998642 3688999999998754
No 443
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.21 E-value=0.0061 Score=58.97 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=25.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||+|++.++...
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567789999999999999999999865
No 444
>PLN02674 adenylate kinase
Probab=96.19 E-value=0.0039 Score=63.50 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=29.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
+...|+|.||||+||+|+++.||..+++. .++..+++
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 34679999999999999999999988754 44455554
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.18 E-value=0.0043 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.6
Q ss_pred eeeecCCCChhHHHHHHHHhhh
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l 352 (620)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 446
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.17 E-value=0.02 Score=63.20 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.++.++|.||+|+||||++..||..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999988888654
No 447
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.012 Score=56.41 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=25.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||+|.+.++...
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44567789999999999999999999865
No 448
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.17 E-value=0.013 Score=57.07 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=18.1
Q ss_pred eeeecCCCChhHHHHHHHH
Q 007053 331 VLFYGPPGCGKTLLAKAIA 349 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA 349 (620)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 449
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0095 Score=60.14 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=38.2
Q ss_pred hhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccC
Q 007053 216 IAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 276 (620)
Q Consensus 216 lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~ 276 (620)
||+.|.+|.||...+.|-||.|.||||-. -.|+.+||+.++.++
T Consensus 369 LaRsTddFNGAQcKAVcVEAGMiALRr~a-----------------tev~heDfmegI~eV 412 (424)
T KOG0652|consen 369 LARSTDDFNGAQCKAVCVEAGMIALRRGA-----------------TEVTHEDFMEGILEV 412 (424)
T ss_pred HhhcccccCchhheeeehhhhHHHHhccc-----------------ccccHHHHHHHHHHH
Confidence 99999999999999999999999999742 357888998887654
No 450
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.15 E-value=0.013 Score=61.20 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+..++|.||+|+||||++..+|..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998766
No 451
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.14 E-value=0.013 Score=62.63 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
|+....-..|+||||||||+|+..+|-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 667777889999999999999998874
No 452
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.14 E-value=0.0065 Score=60.14 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=17.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l 352 (620)
-.+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999998777776655
No 453
>PRK04182 cytidylate kinase; Provisional
Probab=96.13 E-value=0.0039 Score=59.63 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=26.3
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.|+|.|++|||||++++.||..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999987765
No 454
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.10 E-value=0.015 Score=58.54 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.7
Q ss_pred CCCceeeeecCCCChhHHHHHHHHh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
.+...++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999987
No 455
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.09 E-value=0.015 Score=62.47 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=23.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
....||.||||||||+|++.+++.+..
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999987744
No 456
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.07 E-value=0.0045 Score=58.74 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=20.8
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
|.|+|+||||||||+++|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 77655
No 457
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.07 E-value=0.013 Score=57.86 Aligned_cols=110 Identities=20% Similarity=0.380 Sum_probs=59.8
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 403 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r 403 (620)
|......++|.|+-|+|||++.+.|+.+ ++. +. +... ....... ..... -|+.+||++.+...
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~-d~--~~~~---~~kd~~~----~l~~~--~iveldEl~~~~k~- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFS-DS--INDF---DDKDFLE----QLQGK--WIVELDELDGLSKK- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hcc-Cc--cccC---CCcHHHH----HHHHh--HheeHHHHhhcchh-
Confidence 4444567899999999999999999655 111 11 1000 0111111 11122 38999999887521
Q ss_pred CCCCCCCCCchhHHHHHHhhhh-cCCC---------CcceEEEEccCCCCCCCc-ccccCCCCCCceeeee
Q 007053 404 GSSVGDAGGAADRVLNQLLTEM-DGMS---------AKKTVFIIGATNRPDIID-PALLRPGRLDQLIYIP 463 (620)
Q Consensus 404 ~~~~~~~~~~~~rvl~~LL~~l-d~~~---------~~~~viVIatTn~~~~Ld-~al~rpgRf~~~i~~~ 463 (620)
.. ..+..+++.- +..+ -....++|||||..+.|. +.--| ||- .+.+.
T Consensus 111 ---------~~-~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf~-~v~v~ 168 (198)
T PF05272_consen 111 ---------DV-EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RFW-PVEVS 168 (198)
T ss_pred ---------hH-HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EEE-EEEEc
Confidence 11 2344444432 2211 123578899999987553 33444 663 44444
No 458
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.06 E-value=0.0053 Score=56.61 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=26.3
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhc
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
.+...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345679999999999999999999998764
No 459
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.06 E-value=0.0098 Score=56.82 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=25.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||+|++.++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567789999999999999999999875
No 460
>PRK01184 hypothetical protein; Provisional
Probab=96.06 E-value=0.0043 Score=60.10 Aligned_cols=29 Identities=31% Similarity=0.396 Sum_probs=24.2
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
-|+|+||||+||||+++ ++++++++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999987 788888776554
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.06 E-value=0.012 Score=65.98 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=52.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee--------------e------------ecc--cc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------M------------WFG--ES 372 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~--------------~------------~~g--~s 372 (620)
|+.+...+|+.||||+|||+|+-.++... |-+.+++...+-.. . +.. ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67788889999999999999999888754 33445444322110 0 000 01
Q ss_pred ccchHHHHHhhhccCCeeeeeccchhHHh
Q 007053 373 EANVREIFDKARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 373 e~~i~~if~~A~~~~p~IL~iDEiD~l~~ 401 (620)
+..+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 33455666666677889999999998764
No 462
>PTZ00035 Rad51 protein; Provisional
Probab=96.04 E-value=0.01 Score=63.48 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
|+....-+.|+||||||||+|+..++..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 6777788999999999999999988753
No 463
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.03 E-value=0.014 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=24.3
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||+|.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4556779999999999999999999765
No 464
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.03 E-value=0.017 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l 352 (620)
++..++.||.|+|||++.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999987544
No 465
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.03 E-value=0.0077 Score=63.84 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
|+.+..-+.++||||+|||+|+..++.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 667778899999999999999998875
No 466
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.01 E-value=0.0078 Score=62.16 Aligned_cols=73 Identities=22% Similarity=0.407 Sum_probs=47.6
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh----ceeeecCc---------cee-eeeccccccchHHHHHhhhccCCeee
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGP---------ELL-TMWFGESEANVREIFDKARQSAPCVL 391 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~----~~i~i~~~---------~l~-~~~~g~se~~i~~if~~A~~~~p~IL 391 (620)
.+..-||++||.||||||...++-.+.+. +.+.+.-| .|+ ..-+|..-......++.|.+..|.||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 33445889999999999998888887754 33333221 111 12234444445556677777889999
Q ss_pred eeccchh
Q 007053 392 FFDELDS 398 (620)
Q Consensus 392 ~iDEiD~ 398 (620)
++=|+-.
T Consensus 203 lvGEmRD 209 (353)
T COG2805 203 LVGEMRD 209 (353)
T ss_pred EEecccc
Confidence 9988744
No 467
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0042 Score=62.33 Aligned_cols=48 Identities=38% Similarity=0.653 Sum_probs=42.3
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccC
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 276 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~ 276 (620)
+++.+|++..|-+||++.+.|+||.|+|||++ .+.||.+||..|..++
T Consensus 341 ~l~kiaekm~gasgaevk~vcteagm~alrer-----------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 341 NLRKIAEKMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred CHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----------------hccccHHHHHHHHHHH
Confidence 56779999999999999999999999999964 4678999999888754
No 468
>PRK14526 adenylate kinase; Provisional
Probab=96.00 E-value=0.0053 Score=61.25 Aligned_cols=34 Identities=38% Similarity=0.685 Sum_probs=27.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.++|.|||||||||+++.||..++..++ +..+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 4889999999999999999998876554 344443
No 469
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.022 Score=61.31 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=60.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh--hceeeecCcceee--------------eeccccccchHHHHHhhhccC
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT--------------MWFGESEANVREIFDKARQSA 387 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~l~~--------------~~~g~se~~i~~if~~A~~~~ 387 (620)
|+-+..-+||-|.||.|||||.-.++..+. .++++|++.+-.. ...--.+-++..++.......
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 455667799999999999998888877663 2688888765431 111124567888999999999
Q ss_pred CeeeeeccchhHHhhc
Q 007053 388 PCVLFFDELDSIATQR 403 (620)
Q Consensus 388 p~IL~iDEiD~l~~~r 403 (620)
|.+++||-|..+....
T Consensus 169 p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 169 PDLVVIDSIQTLYSEE 184 (456)
T ss_pred CCEEEEeccceeeccc
Confidence 9999999999987554
No 470
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.00 E-value=0.0042 Score=62.17 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.1
Q ss_pred eeeecCCCChhHHHHHHHHhhh
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l 352 (620)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999885
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.00 E-value=0.005 Score=58.45 Aligned_cols=28 Identities=43% Similarity=0.724 Sum_probs=25.4
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
|.|+|++|+|||++|+.+++.++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999887654
No 472
>PRK08233 hypothetical protein; Provisional
Probab=95.98 E-value=0.0057 Score=58.67 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=24.8
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh-hceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ-ANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~-~~~i~i 359 (620)
.-|.|.|+||+||||+|+.|+..++ ..++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 4578899999999999999999885 334433
No 473
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.97 E-value=0.012 Score=62.17 Aligned_cols=122 Identities=19% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee----------------eeeccccccchHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----------------TMWFGESEANVREIFDKAR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~----------------~~~~g~se~~i~~if~~A~ 384 (620)
|++..+-+-++||+|+|||+|+-.+..++ +..++.+++..-+ -......+..+.-+-...+
T Consensus 49 G~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lir 128 (322)
T PF00154_consen 49 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIR 128 (322)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHH
T ss_pred ccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhh
Confidence 44455567899999999999977665443 4555666554322 1111222333322222234
Q ss_pred ccCCeeeeeccchhHHhhcCCC---CCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC
Q 007053 385 QSAPCVLFFDELDSIATQRGSS---VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 445 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~---~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~ 445 (620)
....+++++|-+..+.++..-. ....-+...|++++++..+...-...++.+|+...-.+.
T Consensus 129 sg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ 192 (322)
T PF00154_consen 129 SGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKSNTTLIFINQVRDK 192 (322)
T ss_dssp TTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTTT-EEEEEEEESSS
T ss_pred cccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhhceEEEEeehHHHH
Confidence 4455799999999998764211 111234567888998888776555556666665543333
No 474
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.97 E-value=0.0055 Score=57.58 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=25.4
Q ss_pred eeeecCCCChhHHHHHHHHhhh---hhceeeecC
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC---QANFISVKG 361 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l---~~~~i~i~~ 361 (620)
++|+|+||+|||++|+.++..+ +.+.+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999988 445555543
No 475
>PF13479 AAA_24: AAA domain
Probab=95.96 E-value=0.011 Score=59.05 Aligned_cols=69 Identities=26% Similarity=0.389 Sum_probs=38.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce-eeee------ccccccchHHHHHhh--hccCCeeeeeccchh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL-LTMW------FGESEANVREIFDKA--RQSAPCVLFFDELDS 398 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l-~~~~------~g~se~~i~~if~~A--~~~~p~IL~iDEiD~ 398 (620)
+..++|||+||+|||++|..+-+ .-|+.+..... +..+ .-.+-..+.+.+..+ ....-..|+||.++.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~~k---~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASLPK---PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhCCC---eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 45699999999999999988821 11222222210 0000 001222344444332 223457999998887
Q ss_pred H
Q 007053 399 I 399 (620)
Q Consensus 399 l 399 (620)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 6
No 476
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.96 E-value=0.024 Score=66.63 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=55.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhc----eeeecCcc-----eeeeeccccccchHHHHHhhh----------ccCC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQAN----FISVKGPE-----LLTMWFGESEANVREIFDKAR----------QSAP 388 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~----~i~i~~~~-----l~~~~~g~se~~i~~if~~A~----------~~~p 388 (620)
.+.++|.|+||||||++++++...+... -+.+-++. -+....|.....+..++.... ....
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 3468999999999999999997765321 12221211 111222333345555553211 1234
Q ss_pred eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 389 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 389 ~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
.+|++||+..+. ..++..|+..+ ....++++++=.+.
T Consensus 418 ~llIvDEaSMvd--------------~~~~~~Ll~~~---~~~~rlilvGD~~Q 454 (720)
T TIGR01448 418 DLLIVDESSMMD--------------TWLALSLLAAL---PDHARLLLVGDTDQ 454 (720)
T ss_pred CEEEEeccccCC--------------HHHHHHHHHhC---CCCCEEEEECcccc
Confidence 799999986643 23455565543 34557777775543
No 477
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.95 E-value=0.0094 Score=63.75 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=62.8
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh---------hceeeecCccee--------------------ee--eccc-
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELL--------------------TM--WFGE- 371 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~---------~~~i~i~~~~l~--------------------~~--~~g~- 371 (620)
|+.+..-++++|+||+|||+|+..+|.... ...++|+..+-+ .. +...
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 567777889999999999999988874321 246666654411 00 0000
Q ss_pred cccc----hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 372 SEAN----VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 372 se~~----i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
.... +..+........+.+|+||-|-.+....-...++. ......+.+++..|..+....++.|+.|..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l-~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGEL-SARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccH-HHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 0001 11111222345678999999999875321111110 011123556666665554445566665543
No 478
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.95 E-value=0.0053 Score=64.20 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=26.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
.-++|.|+|||||||+|+.+++.+. +++.++..+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~ 36 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDD 36 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccH
Confidence 4588999999999999999999883 334444333
No 479
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.94 E-value=0.012 Score=62.62 Aligned_cols=58 Identities=21% Similarity=0.406 Sum_probs=43.3
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCC-CCceeeeecCCCChhHHHHHHHHhhhhh-ceeee
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-NFISV 359 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~-~~~~vLL~GppGtGKT~LAralA~~l~~-~~i~i 359 (620)
+++.|+++.+.+|.+++...-. |.. ..+-++|.||+|+|||+|++.|.+-+.. +++.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~--------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQ--------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHh--------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 4899999999999887765322 222 2356789999999999999999987743 34443
No 480
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.94 E-value=0.0064 Score=58.47 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
.++.-|+|.|+||+||||+++.++..+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34667999999999999999999998864
No 481
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=95.93 E-value=0.024 Score=62.06 Aligned_cols=168 Identities=22% Similarity=0.308 Sum_probs=90.4
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeee-cCcceeeeeccccc
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGPELLTMWFGESE 373 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i-~~~~l~~~~~g~se 373 (620)
+|.|.+++|+.|.-++.......- -.-+.+...-+|+|.|.||+.|+-|.+.+.+-.-...+.- .++. -+|-+.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~-~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSP-GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCC-CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccch
Confidence 478999999998877665322110 0112233345799999999999999999987653332221 1111 112221
Q ss_pred cchHHHHH-h-h------hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh--cCCC--CcceEEEEccCC
Q 007053 374 ANVREIFD-K-A------RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM--DGMS--AKKTVFIIGATN 441 (620)
Q Consensus 374 ~~i~~if~-~-A------~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l--d~~~--~~~~viVIatTn 441 (620)
..++.-.. + . .-....|-+|||+|.+..... .+..+++.|----+ -|+. -+.+.-|+|++|
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR-------tAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR-------TAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh-------HHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 11111000 0 0 001224889999999873211 12222332211111 0111 133567788887
Q ss_pred CCC-------------CCcccccCCCCCCceeee-eCCChhHHHHHHHH
Q 007053 442 RPD-------------IIDPALLRPGRLDQLIYI-PLPDEESRLQIFKA 476 (620)
Q Consensus 442 ~~~-------------~Ld~al~rpgRf~~~i~~-~~P~~~eR~~Il~~ 476 (620)
... .|+.||++ |||..+-+ +.|+.+.=..+-++
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHH
Confidence 543 48899998 99965554 56776655555544
No 482
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.89 E-value=0.021 Score=56.59 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~ 350 (620)
....++|.||.|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346699999999999999999874
No 483
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.86 E-value=0.032 Score=53.04 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=70.8
Q ss_pred ecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCc
Q 007053 334 YGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA 413 (620)
Q Consensus 334 ~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~ 413 (620)
.+.+||||||++.+|++.++- +-.+...++.++ ....-+..+.+........++|.|-=..+.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~------------- 67 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQK------------- 67 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchH-------------
Confidence 478999999999999998873 444555555333 223334555555533444588888543333
Q ss_pred hhHHHHHHhhhhcCCCC-----cceEEEEccCCCCC-CCc-------ccccCCCCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 414 ADRVLNQLLTEMDGMSA-----KKTVFIIGATNRPD-IID-------PALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 414 ~~rvl~~LL~~ld~~~~-----~~~viVIatTn~~~-~Ld-------~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
+--.+|++.+..+.+ ..++-+||-.=..+ .++ ..+...|-=...|.....+...-..|++.+++.
T Consensus 68 --reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~r 145 (168)
T PF08303_consen 68 --RERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKR 145 (168)
T ss_pred --HHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHh
Confidence 233444444433322 33455554442221 121 122232222345666666677777888888755
Q ss_pred C
Q 007053 481 S 481 (620)
Q Consensus 481 ~ 481 (620)
.
T Consensus 146 f 146 (168)
T PF08303_consen 146 F 146 (168)
T ss_pred c
Confidence 4
No 484
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.86 E-value=0.0069 Score=58.85 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=21.7
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
...-.+|+||||+|||+++..++..+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34558999999999999999888654
No 485
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.83 E-value=0.12 Score=54.52 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCeeeeeccchhHHhhcCCCCCCC---CCchhHHHHHHhhhhcCCCC-cceEEE--EccCCC---CC--CCcccccCCCC
Q 007053 387 APCVLFFDELDSIATQRGSSVGDA---GGAADRVLNQLLTEMDGMSA-KKTVFI--IGATNR---PD--IIDPALLRPGR 455 (620)
Q Consensus 387 ~p~IL~iDEiD~l~~~r~~~~~~~---~~~~~rvl~~LL~~ld~~~~-~~~viV--IatTn~---~~--~Ld~al~rpgR 455 (620)
.|.++-+|++..|.....-...+. ....-.+...|+..+.+-.. .++.+| +++|.. +. .++.++.....
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 477888999999986532221111 11223455666666443332 223333 555522 22 34444443111
Q ss_pred ------CC-------------ceeeeeCCChhHHHHHHHHhhccCCCC
Q 007053 456 ------LD-------------QLIYIPLPDEESRLQIFKACLRKSPVS 484 (620)
Q Consensus 456 ------f~-------------~~i~~~~P~~~eR~~Il~~~l~~~~l~ 484 (620)
|. ..+.++..+.+|-..+++.+....-+.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 11 167889999999999999988665554
No 486
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.83 E-value=0.0091 Score=61.03 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=48.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhhc--eeeecCcc-------------------------eeeeeccccccch
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPE-------------------------LLTMWFGESEANV 376 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~~--~i~i~~~~-------------------------l~~~~~g~se~~i 376 (620)
.+.....+-|.|.+||||||++|.+....... -+.+++.+ .+.+|..+....-
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34567789999999999999999999865321 12222221 1223333333333
Q ss_pred HHH--HHhhhccCCeeeeeccchhHH
Q 007053 377 REI--FDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 377 ~~i--f~~A~~~~p~IL~iDEiD~l~ 400 (620)
++- +..|....|.+|+.||.-+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhc
Confidence 333 344445679999999987754
No 487
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.83 E-value=0.0068 Score=59.06 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.5
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
|.|+|.+|||||++++.++...+++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 68999999999999999998866666543
No 488
>PRK12338 hypothetical protein; Provisional
Probab=95.80 E-value=0.0074 Score=63.65 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=26.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
.|.-+++.|+|||||||+|+++|..++...
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 356799999999999999999999998754
No 489
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0078 Score=60.92 Aligned_cols=45 Identities=27% Similarity=0.463 Sum_probs=38.3
Q ss_pred hhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCC
Q 007053 216 IAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSN 277 (620)
Q Consensus 216 lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ 277 (620)
||..|++-.||||...|+||.|+|+|.+.. ..|..||+.|+.++.
T Consensus 375 larlcpnstgaeirsvcteagmfairarrk-----------------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 375 LARLCPNSTGAEIRSVCTEAGMFAIRARRK-----------------VATEKDFLDAVNKVV 419 (435)
T ss_pred HHhhCCCCcchHHHHHHHHhhHHHHHHHhh-----------------hhhHHHHHHHHHHHH
Confidence 899999999999999999999999985433 456789998887654
No 490
>PLN02459 probable adenylate kinase
Probab=95.78 E-value=0.0085 Score=61.46 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=27.7
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
..++|.||||+||||+++.+|..+++.+ ++..+++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHH
Confidence 4588899999999999999999887554 4445554
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.75 E-value=0.033 Score=63.03 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=24.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
|+++...+||+|+||+|||+|+..++.+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~ 54 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVN 54 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5677888999999999999999987653
No 492
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.74 E-value=0.0097 Score=65.05 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=27.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.+.|.|.|++|||||||+++||+.++..++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 5679999999999999999999998776543
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.74 E-value=0.0077 Score=58.61 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.3
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
..++|.||+|+|||||++.|+..++..|
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 4588999999999999999998876554
No 494
>PRK14529 adenylate kinase; Provisional
Probab=95.73 E-value=0.0073 Score=60.71 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=28.7
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
.|+|.||||+||||+++.|+..+++.++ +..+++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~ 37 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE 37 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence 4889999999999999999999986654 44455433
No 495
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.73 E-value=0.0082 Score=59.22 Aligned_cols=29 Identities=31% Similarity=0.356 Sum_probs=25.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
+.-+++.|+||+|||++|+.+|.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999987654
No 496
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.71 E-value=0.035 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=18.7
Q ss_pred ceeeeecCCCChhHH-HHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTL-LAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~-LAralA~~l 352 (620)
+.+++.||+|+|||+ ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 679999999999999 555555443
No 497
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.69 E-value=0.0089 Score=56.63 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=29.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL 365 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~ 365 (620)
+..|+|+|.||+|||+||++|.+.+ +.+.+.+++..+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 3468999999999999999999887 5567777765543
No 498
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.66 E-value=0.025 Score=66.77 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=41.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCc----ceeeeeccccccchHHHHHh-hh----ccCCeeeeecc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP----ELLTMWFGESEANVREIFDK-AR----QSAPCVLFFDE 395 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~----~l~~~~~g~se~~i~~if~~-A~----~~~p~IL~iDE 395 (620)
.+-++|.|+||||||++++++...+ +..++.+-.. ..+....|.....+..+... .. .....+|++||
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE 447 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDE 447 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEEC
Confidence 3468899999999999999987655 4444433221 11122223333344444221 11 12347999999
Q ss_pred chhH
Q 007053 396 LDSI 399 (620)
Q Consensus 396 iD~l 399 (620)
+-.+
T Consensus 448 asMv 451 (744)
T TIGR02768 448 AGMV 451 (744)
T ss_pred cccC
Confidence 8654
No 499
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.65 E-value=0.022 Score=66.61 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+++...+-|.|++|||||||+|.+....
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455669999999999999999999765
No 500
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.62 E-value=0.011 Score=56.64 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=27.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh---hceeeecC
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKG 361 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~ 361 (620)
++..+.|.|+||+|||++++.++..+. ..+..+++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 356789999999999999999999873 23444544
Done!