Query 007053
Match_columns 620
No_of_seqs 569 out of 3968
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1E-102 5E-107 899.5 31.8 606 14-620 9-806 (806)
2 1ypw_A Transitional endoplasmi 100.0 1E-84 3.5E-89 761.3 24.5 607 13-620 8-806 (806)
3 3hu3_A Transitional endoplasmi 100.0 7.8E-70 2.7E-74 602.0 30.9 469 11-575 6-485 (489)
4 4b4t_J 26S protease regulatory 100.0 1E-54 3.6E-59 464.8 17.4 276 276-576 130-405 (405)
5 3cf2_A TER ATPase, transitiona 100.0 2.5E-53 8.7E-58 489.8 21.7 297 285-594 195-502 (806)
6 4b4t_I 26S protease regulatory 100.0 1.1E-52 3.7E-57 450.3 15.9 265 282-571 170-434 (437)
7 4b4t_L 26S protease subunit RP 100.0 1.6E-51 5.4E-56 446.5 18.8 271 277-572 164-434 (437)
8 4b4t_M 26S protease regulatory 100.0 3.6E-51 1.2E-55 443.4 18.4 264 278-566 165-428 (434)
9 4b4t_H 26S protease regulatory 100.0 5E-51 1.7E-55 441.3 18.1 265 284-573 199-464 (467)
10 4b4t_K 26S protease regulatory 100.0 1.5E-50 5.3E-55 438.1 15.4 262 283-569 161-424 (428)
11 3qwz_A Transitional endoplasmi 100.0 1.7E-46 5.9E-51 367.6 17.5 200 13-212 11-211 (211)
12 3cf0_A Transitional endoplasmi 100.0 3.3E-45 1.1E-49 381.6 20.7 300 281-580 2-301 (301)
13 3tiw_A Transitional endoplasmi 100.0 2.9E-42 9.8E-47 332.0 17.5 179 13-191 8-186 (187)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 4.5E-42 1.5E-46 361.5 17.8 291 285-581 3-320 (322)
15 2x8a_A Nuclear valosin-contain 100.0 3.3E-41 1.1E-45 347.0 13.8 266 287-569 3-273 (274)
16 3eie_A Vacuolar protein sortin 100.0 1.2E-40 4.1E-45 350.4 14.1 293 283-581 7-319 (322)
17 2qp9_X Vacuolar protein sortin 100.0 3.3E-40 1.1E-44 351.8 15.4 292 284-581 41-352 (355)
18 2zan_A Vacuolar protein sortin 100.0 2.5E-39 8.6E-44 354.9 15.1 292 284-581 124-442 (444)
19 1ypw_A Transitional endoplasmi 100.0 2.3E-36 7.8E-41 353.2 20.0 295 287-594 197-502 (806)
20 2ce7_A Cell division protein F 100.0 8.2E-36 2.8E-40 327.8 19.0 249 288-562 10-258 (476)
21 3h4m_A Proteasome-activating n 100.0 1.4E-35 4.9E-40 304.9 17.6 269 286-579 9-279 (285)
22 1lv7_A FTSH; alpha/beta domain 100.0 5.4E-35 1.8E-39 296.7 20.5 250 287-562 5-254 (257)
23 3d8b_A Fidgetin-like protein 1 100.0 1.6E-35 5.4E-40 315.9 15.2 278 284-580 74-354 (357)
24 3b9p_A CG5977-PA, isoform A; A 100.0 2E-35 6.7E-40 305.9 11.5 279 284-581 11-293 (297)
25 2dhr_A FTSH; AAA+ protein, hex 100.0 5.6E-34 1.9E-38 314.9 18.5 275 289-594 26-309 (499)
26 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.5E-34 8.4E-39 291.4 13.2 249 289-563 1-252 (262)
27 3vfd_A Spastin; ATPase, microt 100.0 8.1E-34 2.8E-38 305.9 16.0 281 282-581 103-386 (389)
28 1ixz_A ATP-dependent metallopr 100.0 6.1E-33 2.1E-37 281.1 16.0 247 285-557 7-253 (254)
29 2r62_A Cell division protease 100.0 3.9E-34 1.3E-38 291.8 4.7 253 287-565 4-258 (268)
30 1cz4_A VCP-like ATPase; double 100.0 1.7E-31 6E-36 257.5 16.3 160 29-195 7-178 (185)
31 1iy2_A ATP-dependent metallopr 100.0 2.1E-31 7.3E-36 273.8 15.8 246 286-557 32-277 (278)
32 3t15_A Ribulose bisphosphate c 99.9 1.2E-26 4.2E-31 240.6 9.9 177 324-507 32-223 (293)
33 1wlf_A PEX1, peroxisome biogen 99.9 1.7E-25 5.9E-30 214.6 12.1 159 29-192 13-178 (179)
34 2c9o_A RUVB-like 1; hexameric 99.9 3.1E-25 1.1E-29 243.9 1.0 205 288-510 31-262 (456)
35 3syl_A Protein CBBX; photosynt 99.8 2.5E-21 8.4E-26 200.8 8.1 216 293-521 30-268 (309)
36 3m6a_A ATP-dependent protease 99.8 2.3E-20 7.9E-25 209.2 7.6 234 287-560 74-341 (543)
37 3uk6_A RUVB-like 2; hexameric 99.8 1.3E-19 4.6E-24 192.3 10.1 220 289-560 39-330 (368)
38 1g41_A Heat shock protein HSLU 99.8 3.6E-20 1.2E-24 201.0 2.5 170 293-474 14-188 (444)
39 1d2n_A N-ethylmaleimide-sensit 99.8 1.8E-18 6E-23 176.6 12.1 192 294-500 33-230 (272)
40 1ofh_A ATP-dependent HSL prote 99.8 3.1E-19 1E-23 184.4 6.4 244 294-560 15-299 (310)
41 3pfi_A Holliday junction ATP-d 99.8 3.6E-18 1.2E-22 179.5 13.7 195 289-516 24-235 (338)
42 3hws_A ATP-dependent CLP prote 99.7 2.5E-18 8.7E-23 183.0 9.0 223 295-519 16-326 (363)
43 2v1u_A Cell division control p 99.7 3.8E-17 1.3E-21 173.4 15.4 204 291-516 16-257 (387)
44 3cmw_A Protein RECA, recombina 99.7 8.6E-19 2.9E-23 214.7 0.4 209 217-443 960-1218(1706)
45 1hqc_A RUVB; extended AAA-ATPa 99.7 8E-17 2.7E-21 167.7 14.3 195 289-515 7-218 (324)
46 1r6b_X CLPA protein; AAA+, N-t 99.7 6.2E-17 2.1E-21 188.5 14.3 248 290-583 182-460 (758)
47 3pxg_A Negative regulator of g 99.7 3.5E-16 1.2E-20 172.3 15.7 185 290-515 176-385 (468)
48 1r6b_X CLPA protein; AAA+, N-t 99.7 2.4E-16 8.1E-21 183.5 15.0 265 212-520 377-720 (758)
49 1l8q_A Chromosomal replication 99.7 1.6E-16 5.4E-21 166.2 11.1 197 289-514 6-214 (324)
50 1g8p_A Magnesium-chelatase 38 99.7 2E-16 6.7E-21 166.4 11.4 175 272-477 4-231 (350)
51 2qby_B CDC6 homolog 3, cell di 99.7 2E-16 6.9E-21 168.3 11.6 195 292-515 18-252 (384)
52 4fcw_A Chaperone protein CLPB; 99.7 2E-16 6.8E-21 163.8 11.2 209 293-521 16-284 (311)
53 1um8_A ATP-dependent CLP prote 99.7 2.3E-16 7.7E-21 168.6 10.9 224 294-519 21-343 (376)
54 1jbk_A CLPB protein; beta barr 99.6 2.9E-17 9.9E-22 156.0 3.3 161 289-475 17-195 (195)
55 1sxj_A Activator 1 95 kDa subu 99.6 5.4E-16 1.9E-20 172.8 14.1 202 289-512 34-253 (516)
56 3pvs_A Replication-associated 99.6 1.5E-16 5.1E-21 174.1 8.5 184 289-514 21-221 (447)
57 2z4s_A Chromosomal replication 99.6 1.5E-16 5E-21 173.9 8.1 200 289-516 100-314 (440)
58 2qby_A CDC6 homolog 1, cell di 99.6 7.8E-16 2.7E-20 163.0 13.2 203 290-516 16-253 (386)
59 2chg_A Replication factor C sm 99.6 1E-15 3.4E-20 148.8 12.6 172 289-498 12-195 (226)
60 3bos_A Putative DNA replicatio 99.6 6.6E-16 2.3E-20 152.7 11.3 206 289-558 23-241 (242)
61 3te6_A Regulatory protein SIR3 99.6 3.5E-16 1.2E-20 163.2 8.0 159 296-480 22-213 (318)
62 2r44_A Uncharacterized protein 99.6 1E-15 3.5E-20 160.4 11.1 154 292-481 25-201 (331)
63 3pxi_A Negative regulator of g 99.6 1.7E-15 6E-20 176.3 13.8 186 290-516 176-386 (758)
64 1njg_A DNA polymerase III subu 99.6 1.9E-15 6.6E-20 148.4 10.9 191 290-512 19-232 (250)
65 3pxi_A Negative regulator of g 99.6 3.7E-15 1.3E-19 173.5 14.4 204 293-520 490-729 (758)
66 1qvr_A CLPB protein; coiled co 99.6 8.9E-16 3E-20 180.9 8.8 201 290-516 166-393 (854)
67 1fnn_A CDC6P, cell division co 99.6 5.3E-15 1.8E-19 157.3 12.1 203 290-517 13-256 (389)
68 3u61_B DNA polymerase accessor 99.6 8.5E-15 2.9E-19 152.8 11.3 152 290-478 22-178 (324)
69 2chq_A Replication factor C sm 99.6 2.3E-14 7.7E-19 148.2 13.7 183 289-509 12-202 (319)
70 2p65_A Hypothetical protein PF 99.6 9E-16 3.1E-20 145.4 2.9 152 290-466 18-187 (187)
71 1in4_A RUVB, holliday junction 99.5 1.1E-13 3.8E-18 145.6 18.1 195 290-517 21-232 (334)
72 1qvr_A CLPB protein; coiled co 99.5 1.2E-14 4.2E-19 171.3 11.4 205 291-521 555-825 (854)
73 1sxj_D Activator 1 41 kDa subu 99.5 4.3E-14 1.5E-18 148.5 12.5 191 289-514 32-241 (353)
74 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.7E-14 9.3E-19 157.8 9.4 152 295-478 23-196 (500)
75 3f9v_A Minichromosome maintena 99.5 7.2E-14 2.5E-18 158.0 11.2 165 294-480 295-492 (595)
76 1sxj_B Activator 1 37 kDa subu 99.5 1.4E-13 4.9E-18 142.4 11.0 172 289-498 16-200 (323)
77 1jr3_A DNA polymerase III subu 99.4 4.3E-13 1.5E-17 142.0 13.9 192 290-513 12-226 (373)
78 1iqp_A RFCS; clamp loader, ext 99.4 1.7E-13 5.7E-18 142.2 10.5 189 289-512 20-216 (327)
79 2bjv_A PSP operon transcriptio 99.4 1E-13 3.5E-18 140.6 6.6 193 291-514 3-239 (265)
80 1ojl_A Transcriptional regulat 99.4 2.2E-13 7.5E-18 141.6 6.8 191 294-515 2-235 (304)
81 1sxj_E Activator 1 40 kDa subu 99.4 1.1E-12 3.6E-17 138.3 10.2 183 290-510 10-239 (354)
82 3aji_B S6C, proteasome (prosom 99.3 8.8E-13 3E-17 110.3 3.8 82 466-573 2-83 (83)
83 1sxj_C Activator 1 40 kDa subu 99.3 7.1E-12 2.4E-16 131.9 11.0 154 289-480 20-184 (340)
84 2krk_A 26S protease regulatory 99.3 2.9E-12 9.8E-17 108.0 5.7 78 461-563 7-84 (86)
85 3vlf_B 26S protease regulatory 99.3 4.6E-12 1.6E-16 107.2 6.5 85 466-575 2-87 (88)
86 3co5_A Putative two-component 99.3 5.6E-13 1.9E-17 122.8 0.9 112 295-443 5-116 (143)
87 3n70_A Transport activator; si 99.3 3.3E-12 1.1E-16 117.9 6.0 112 295-443 2-116 (145)
88 1w5s_A Origin recognition comp 99.3 7.2E-12 2.5E-16 134.2 8.8 208 292-517 20-275 (412)
89 3kw6_A 26S protease regulatory 99.2 7.1E-12 2.4E-16 103.5 5.9 75 463-562 1-75 (78)
90 1a5t_A Delta prime, HOLB; zinc 99.2 5.3E-11 1.8E-15 125.1 13.3 165 299-498 7-196 (334)
91 3k1j_A LON protease, ATP-depen 99.2 8.6E-12 2.9E-16 141.5 7.2 52 287-353 34-85 (604)
92 2jv2_A Putative uncharacterize 99.2 2.7E-11 9.3E-16 100.5 7.7 73 114-192 10-82 (83)
93 2gno_A DNA polymerase III, gam 99.2 7.4E-11 2.5E-15 122.6 11.4 142 298-478 1-152 (305)
94 2dzn_B 26S protease regulatory 99.1 1.8E-11 6.3E-16 102.1 1.1 80 468-572 1-81 (82)
95 3cmu_A Protein RECA, recombina 99.0 1.3E-10 4.3E-15 144.5 4.6 213 218-441 612-867 (2050)
96 4akg_A Glutathione S-transfera 99.0 7.2E-10 2.5E-14 141.9 9.0 140 326-480 1265-1433(2695)
97 3ec2_A DNA replication protein 98.8 1.2E-09 4.2E-14 103.8 3.0 97 290-398 6-111 (180)
98 2fna_A Conserved hypothetical 98.8 3.7E-08 1.3E-12 102.5 14.5 188 289-510 8-252 (357)
99 3hu3_A Transitional endoplasmi 98.8 2.1E-09 7E-14 118.7 4.6 90 212-301 395-484 (489)
100 1ny5_A Transcriptional regulat 98.8 1.1E-08 3.7E-13 109.7 9.6 190 295-515 138-370 (387)
101 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.3E-09 7.9E-14 111.2 3.2 122 324-450 119-242 (331)
102 2kjq_A DNAA-related protein; s 98.7 6.1E-09 2.1E-13 96.6 3.5 59 327-400 35-96 (149)
103 2qen_A Walker-type ATPase; unk 98.7 9.4E-08 3.2E-12 99.3 12.3 192 289-510 7-248 (350)
104 3dzd_A Transcriptional regulat 98.7 1E-08 3.6E-13 109.1 5.0 189 295-514 130-360 (368)
105 2w58_A DNAI, primosome compone 98.7 7.5E-09 2.6E-13 100.0 3.4 71 328-400 54-128 (202)
106 3vlf_B 26S protease regulatory 98.6 1.9E-08 6.4E-13 84.9 3.9 54 212-282 24-77 (88)
107 2r2a_A Uncharacterized protein 98.6 7.2E-08 2.5E-12 93.8 7.1 130 329-470 6-158 (199)
108 2krk_A 26S protease regulatory 98.6 1.8E-08 6.3E-13 84.6 2.5 51 212-279 34-84 (86)
109 3f8t_A Predicted ATPase involv 98.5 1.7E-07 5.9E-12 101.5 9.9 146 296-469 215-385 (506)
110 2qgz_A Helicase loader, putati 98.5 5.2E-08 1.8E-12 101.2 4.1 71 328-400 152-227 (308)
111 3aji_B S6C, proteasome (prosom 98.5 3.3E-08 1.1E-12 82.2 2.0 53 212-281 24-76 (83)
112 1svm_A Large T antigen; AAA+ f 98.5 8.9E-08 3.1E-12 102.1 5.2 120 323-464 164-284 (377)
113 2yuj_A Ubiquitin fusion degrad 98.4 1.9E-06 6.4E-11 82.1 12.9 144 40-188 39-187 (190)
114 3cmu_A Protein RECA, recombina 98.4 1.9E-07 6.6E-12 116.3 7.6 116 324-440 1423-1561(2050)
115 4akg_A Glutathione S-transfera 98.4 9.5E-07 3.3E-11 113.5 13.9 131 328-475 645-790 (2695)
116 2dzn_B 26S protease regulatory 98.4 1.8E-07 6.2E-12 77.7 4.4 49 212-277 21-69 (82)
117 1zc1_A Ubiquitin fusion degrad 98.3 3.5E-06 1.2E-10 81.2 11.9 145 41-190 45-197 (208)
118 3kw6_A 26S protease regulatory 98.3 2.8E-07 9.5E-12 75.7 3.4 48 212-276 26-73 (78)
119 1tue_A Replication protein E1; 98.2 6.9E-07 2.3E-11 86.8 5.2 33 325-357 55-87 (212)
120 3cmw_A Protein RECA, recombina 98.2 5.5E-08 1.9E-12 120.0 -4.7 78 324-401 728-824 (1706)
121 3vkg_A Dynein heavy chain, cyt 98.0 4.1E-06 1.4E-10 108.4 7.3 139 327-479 1303-1470(3245)
122 1ye8_A Protein THEP1, hypothet 97.9 2.7E-05 9.3E-10 74.0 9.3 27 330-356 2-28 (178)
123 1u0j_A DNA replication protein 97.8 2.4E-05 8.1E-10 79.2 7.4 27 328-354 104-130 (267)
124 1jr3_D DNA polymerase III, del 97.7 0.00012 4E-09 76.5 11.0 156 327-510 17-184 (343)
125 1z6t_A APAF-1, apoptotic prote 97.7 0.00016 5.3E-09 81.1 12.3 166 293-500 123-321 (591)
126 2x8a_A Nuclear valosin-contain 97.7 2.4E-05 8.1E-10 79.7 5.1 67 211-283 203-271 (274)
127 3hr8_A Protein RECA; alpha and 97.7 4.5E-05 1.5E-09 80.5 6.6 116 324-439 57-194 (356)
128 3vkg_A Dynein heavy chain, cyt 97.6 6.1E-05 2.1E-09 97.8 8.6 129 328-476 604-751 (3245)
129 2cvh_A DNA repair and recombin 97.6 5.7E-05 1.9E-09 73.0 6.0 40 324-363 16-55 (220)
130 4b4t_M 26S protease regulatory 97.6 4.6E-05 1.6E-09 82.4 5.0 53 212-281 375-427 (434)
131 3sfz_A APAF-1, apoptotic pepti 97.6 0.00041 1.4E-08 83.9 13.7 167 293-499 123-320 (1249)
132 1n0w_A DNA repair protein RAD5 97.5 8.5E-05 2.9E-09 72.9 6.1 40 324-363 20-68 (243)
133 2zr9_A Protein RECA, recombina 97.5 3.4E-05 1.2E-09 81.3 3.0 78 324-401 57-153 (349)
134 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00011 3.9E-09 71.2 6.4 29 324-352 19-47 (235)
135 4b4t_I 26S protease regulatory 97.5 3.1E-05 1.1E-09 83.2 2.5 53 212-281 376-428 (437)
136 4b4t_J 26S protease regulatory 97.5 3E-05 1E-09 82.9 2.2 51 212-279 342-392 (405)
137 1xp8_A RECA protein, recombina 97.5 6.4E-05 2.2E-09 79.7 4.8 117 324-440 70-208 (366)
138 2ehv_A Hypothetical protein PH 97.5 0.00023 7.7E-09 70.1 8.2 26 324-349 26-51 (251)
139 2c9o_A RUVB-like 1; hexameric 97.4 8.6E-05 2.9E-09 81.0 4.8 128 388-560 296-437 (456)
140 4b4t_L 26S protease subunit RP 97.4 5.4E-05 1.8E-09 82.0 2.9 52 212-280 375-426 (437)
141 1xwi_A SKD1 protein; VPS4B, AA 97.4 7.4E-05 2.5E-09 77.7 3.2 70 211-280 202-303 (322)
142 1u94_A RECA protein, recombina 97.3 0.00011 3.7E-09 77.7 4.4 78 324-401 59-155 (356)
143 3io5_A Recombination and repai 97.3 0.00013 4.6E-09 75.3 4.8 114 324-438 25-167 (333)
144 2z43_A DNA repair and recombin 97.3 0.00014 4.9E-09 75.6 4.8 114 324-440 103-255 (324)
145 4a74_A DNA repair and recombin 97.3 0.00011 3.8E-09 71.4 3.6 29 324-352 21-49 (231)
146 3vaa_A Shikimate kinase, SK; s 97.3 0.00011 3.9E-09 70.4 3.6 36 325-360 22-57 (199)
147 3dm5_A SRP54, signal recogniti 97.3 0.001 3.6E-08 71.9 11.4 205 327-561 99-341 (443)
148 2orw_A Thymidine kinase; TMTK, 97.3 0.00019 6.4E-09 68.5 4.9 70 329-399 4-88 (184)
149 1v5w_A DMC1, meiotic recombina 97.3 0.0003 1E-08 73.8 6.9 40 324-363 118-166 (343)
150 2rhm_A Putative kinase; P-loop 97.2 0.00014 4.9E-09 68.7 3.6 34 325-358 2-35 (193)
151 4b4t_H 26S protease regulatory 97.2 0.00013 4.4E-09 79.1 3.6 51 212-279 403-453 (467)
152 1qhx_A CPT, protein (chloramph 97.2 0.00017 5.7E-09 67.5 4.0 35 328-362 3-37 (178)
153 3trf_A Shikimate kinase, SK; a 97.2 0.00014 4.7E-09 68.6 3.3 33 328-360 5-37 (185)
154 2qp9_X Vacuolar protein sortin 97.2 0.00016 5.4E-09 76.3 3.1 71 211-281 240-336 (355)
155 3jvv_A Twitching mobility prot 97.1 0.00067 2.3E-08 71.6 7.7 71 327-397 122-206 (356)
156 4b4t_K 26S protease regulatory 97.1 0.0002 6.9E-09 77.3 3.7 49 211-276 366-414 (428)
157 2eyu_A Twitching motility prot 97.1 0.00068 2.3E-08 68.3 7.3 73 325-397 22-108 (261)
158 3upu_A ATP-dependent DNA helic 97.1 0.00083 2.8E-08 73.2 7.7 25 329-353 46-70 (459)
159 1y63_A LMAJ004144AAA protein; 97.0 0.00032 1.1E-08 66.5 3.8 34 327-360 9-43 (184)
160 3iij_A Coilin-interacting nucl 97.0 0.00031 1.1E-08 66.0 3.6 33 327-359 10-42 (180)
161 2iyv_A Shikimate kinase, SK; t 97.0 0.00034 1.2E-08 65.9 3.3 32 329-360 3-34 (184)
162 2a5y_B CED-4; apoptosis; HET: 97.0 0.0029 9.8E-08 70.5 11.2 165 297-499 131-329 (549)
163 1kag_A SKI, shikimate kinase I 97.0 0.00043 1.5E-08 64.3 3.8 31 328-358 4-34 (173)
164 3kb2_A SPBC2 prophage-derived 97.0 0.00038 1.3E-08 64.3 3.4 31 330-360 3-33 (173)
165 1via_A Shikimate kinase; struc 97.0 0.00035 1.2E-08 65.3 3.2 30 330-359 6-35 (175)
166 1zp6_A Hypothetical protein AT 96.9 0.00036 1.2E-08 65.9 3.2 39 325-363 6-44 (191)
167 3lda_A DNA repair protein RAD5 96.9 0.00042 1.5E-08 74.2 4.1 27 324-350 174-200 (400)
168 2dr3_A UPF0273 protein PH0284; 96.9 0.0008 2.7E-08 65.9 5.6 29 324-352 19-47 (247)
169 1pzn_A RAD51, DNA repair and r 96.9 0.00074 2.5E-08 71.0 5.7 30 323-352 126-155 (349)
170 1g41_A Heat shock protein HSLU 96.9 0.001 3.4E-08 72.1 6.7 169 376-572 241-442 (444)
171 3eie_A Vacuolar protein sortin 96.9 0.0002 6.8E-09 74.3 1.0 71 212-282 208-304 (322)
172 1zuh_A Shikimate kinase; alpha 96.9 0.00046 1.6E-08 64.0 3.4 31 329-359 8-38 (168)
173 2zan_A Vacuolar protein sortin 96.9 0.00028 9.7E-09 76.6 2.0 70 211-280 324-425 (444)
174 3cm0_A Adenylate kinase; ATP-b 96.9 0.00044 1.5E-08 65.0 2.9 32 328-359 4-35 (186)
175 2cdn_A Adenylate kinase; phosp 96.8 0.00057 2E-08 65.4 3.8 32 328-359 20-51 (201)
176 2c95_A Adenylate kinase 1; tra 96.8 0.00044 1.5E-08 65.5 2.8 33 327-359 8-40 (196)
177 1tev_A UMP-CMP kinase; ploop, 96.8 0.00052 1.8E-08 64.7 3.2 31 328-358 3-33 (196)
178 2ewv_A Twitching motility prot 96.8 0.0017 5.7E-08 68.9 7.4 79 319-397 127-219 (372)
179 2zts_A Putative uncharacterize 96.8 0.0031 1.1E-07 61.7 8.9 28 324-351 26-53 (251)
180 2i1q_A DNA repair and recombin 96.8 0.00041 1.4E-08 71.8 2.5 28 324-351 94-121 (322)
181 3qwz_A Transitional endoplasmi 96.8 0.002 6.8E-08 62.7 7.2 82 71-162 26-108 (211)
182 1gvn_B Zeta; postsegregational 96.8 0.00092 3.1E-08 68.3 5.0 37 327-363 32-68 (287)
183 3tiw_A Transitional endoplasmi 96.8 0.002 6.8E-08 61.6 6.9 89 64-162 17-105 (187)
184 3lw7_A Adenylate kinase relate 96.8 0.00054 1.8E-08 63.0 2.9 29 330-359 3-31 (179)
185 1kht_A Adenylate kinase; phosp 96.8 0.00065 2.2E-08 63.9 3.4 25 329-353 4-28 (192)
186 1e6c_A Shikimate kinase; phosp 96.8 0.00063 2.2E-08 63.0 3.2 31 329-359 3-33 (173)
187 1zd8_A GTP:AMP phosphotransfer 96.7 0.00059 2E-08 66.8 3.0 33 327-359 6-38 (227)
188 1aky_A Adenylate kinase; ATP:A 96.7 0.00067 2.3E-08 65.9 3.4 32 328-359 4-35 (220)
189 1qf9_A UMP/CMP kinase, protein 96.7 0.00068 2.3E-08 63.7 3.3 32 328-359 6-37 (194)
190 1ly1_A Polynucleotide kinase; 96.7 0.00067 2.3E-08 63.1 3.2 30 328-357 2-32 (181)
191 3be4_A Adenylate kinase; malar 96.7 0.00065 2.2E-08 66.1 3.1 32 328-359 5-36 (217)
192 2ze6_A Isopentenyl transferase 96.7 0.00073 2.5E-08 67.6 3.5 32 330-361 3-34 (253)
193 3t61_A Gluconokinase; PSI-biol 96.7 0.00092 3.1E-08 64.0 4.0 31 328-358 18-48 (202)
194 2bwj_A Adenylate kinase 5; pho 96.7 0.00073 2.5E-08 64.1 3.2 33 327-359 11-43 (199)
195 3e1s_A Exodeoxyribonuclease V, 96.7 0.0027 9.3E-08 71.2 8.1 98 328-442 204-317 (574)
196 1cz4_A VCP-like ATPase; double 96.7 0.003 1E-07 60.3 7.1 72 80-161 17-89 (185)
197 2vli_A Antibiotic resistance p 96.7 0.00075 2.6E-08 63.2 2.9 30 328-357 5-34 (183)
198 3tlx_A Adenylate kinase 2; str 96.6 0.00089 3E-08 66.5 3.5 34 326-359 27-60 (243)
199 1zak_A Adenylate kinase; ATP:A 96.6 0.00074 2.5E-08 65.7 2.9 32 328-359 5-36 (222)
200 3umf_A Adenylate kinase; rossm 96.6 0.00097 3.3E-08 65.4 3.7 38 326-365 27-64 (217)
201 2p5t_B PEZT; postsegregational 96.6 0.00087 3E-08 66.9 3.5 39 326-364 30-68 (253)
202 3crm_A TRNA delta(2)-isopenten 96.6 0.0015 5E-08 67.9 5.2 37 328-364 5-41 (323)
203 1cr5_A SEC18P (residues 22 - 2 96.6 0.02 6.7E-07 54.8 12.6 132 31-173 8-153 (189)
204 1nlf_A Regulatory protein REPA 96.6 0.0016 5.4E-08 65.9 5.3 29 324-352 26-54 (279)
205 1ak2_A Adenylate kinase isoenz 96.6 0.001 3.5E-08 65.4 3.6 32 328-359 16-47 (233)
206 2b8t_A Thymidine kinase; deoxy 96.6 0.0026 8.8E-08 62.6 6.5 71 328-399 12-101 (223)
207 2pt5_A Shikimate kinase, SK; a 96.6 0.00094 3.2E-08 61.6 3.2 30 330-359 2-31 (168)
208 1ukz_A Uridylate kinase; trans 96.6 0.001 3.5E-08 63.6 3.5 32 328-359 15-46 (203)
209 1qcs_A N-ethylmaleimide sensit 96.6 0.018 6E-07 56.1 12.3 141 42-190 24-190 (211)
210 3dl0_A Adenylate kinase; phosp 96.6 0.0009 3.1E-08 64.7 2.9 30 330-359 2-31 (216)
211 3fb4_A Adenylate kinase; psych 96.6 0.00095 3.3E-08 64.4 3.0 30 330-359 2-31 (216)
212 2v54_A DTMP kinase, thymidylat 96.6 0.0017 5.7E-08 61.9 4.7 34 327-360 3-37 (204)
213 1knq_A Gluconate kinase; ALFA/ 96.5 0.0014 4.6E-08 61.1 3.8 30 328-357 8-37 (175)
214 2iut_A DNA translocase FTSK; n 96.5 0.0052 1.8E-07 68.4 8.9 74 389-475 345-420 (574)
215 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0012 4.2E-08 69.3 3.7 30 329-358 25-54 (359)
216 2wwf_A Thymidilate kinase, put 96.5 0.0014 4.8E-08 62.8 3.7 33 327-359 9-41 (212)
217 2ius_A DNA translocase FTSK; n 96.5 0.0058 2E-07 67.3 9.0 76 388-476 297-375 (512)
218 2i3b_A HCR-ntpase, human cance 96.5 0.0077 2.6E-07 57.6 8.8 23 330-352 3-25 (189)
219 4eun_A Thermoresistant glucoki 96.5 0.0016 5.4E-08 62.4 3.8 30 327-356 28-57 (200)
220 1nn5_A Similar to deoxythymidy 96.4 0.0016 5.5E-08 62.4 3.5 33 327-359 8-40 (215)
221 2pez_A Bifunctional 3'-phospho 96.4 0.002 6.7E-08 60.4 4.0 35 327-361 4-41 (179)
222 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0016 5.6E-08 65.2 3.5 36 328-363 4-42 (260)
223 3sr0_A Adenylate kinase; phosp 96.4 0.0017 5.7E-08 63.1 3.3 29 330-358 2-30 (206)
224 3kl4_A SRP54, signal recogniti 96.3 0.0051 1.8E-07 66.4 7.3 72 327-398 96-190 (433)
225 1nks_A Adenylate kinase; therm 96.3 0.0016 5.6E-08 61.0 3.0 24 330-353 3-26 (194)
226 1cke_A CK, MSSA, protein (cyti 96.3 0.0022 7.6E-08 62.2 4.1 30 329-358 6-35 (227)
227 1e4v_A Adenylate kinase; trans 96.3 0.0016 5.5E-08 63.0 2.9 30 330-359 2-31 (214)
228 2px0_A Flagellar biosynthesis 96.3 0.018 6.2E-07 58.9 10.9 27 327-353 104-130 (296)
229 3bh0_A DNAB-like replicative h 96.3 0.0048 1.7E-07 63.7 6.5 29 324-352 64-92 (315)
230 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0026 8.8E-08 66.3 4.4 72 326-397 169-250 (330)
231 2pbr_A DTMP kinase, thymidylat 96.2 0.0025 8.4E-08 60.0 3.6 31 330-360 2-35 (195)
232 3uie_A Adenylyl-sulfate kinase 96.2 0.002 7E-08 61.6 2.9 28 326-353 23-50 (200)
233 1g5t_A COB(I)alamin adenosyltr 96.2 0.0082 2.8E-07 57.7 7.1 31 329-359 29-62 (196)
234 2bbw_A Adenylate kinase 4, AK4 96.2 0.0027 9.4E-08 62.8 3.8 30 328-357 27-56 (246)
235 2jaq_A Deoxyguanosine kinase; 96.2 0.0024 8.2E-08 60.6 3.2 29 330-358 2-30 (205)
236 2xb4_A Adenylate kinase; ATP-b 96.1 0.0026 8.9E-08 62.1 3.5 30 330-359 2-31 (223)
237 3nwj_A ATSK2; P loop, shikimat 96.1 0.002 7E-08 64.5 2.7 32 328-359 48-79 (250)
238 3r20_A Cytidylate kinase; stru 96.1 0.0032 1.1E-07 62.3 3.8 31 328-358 9-39 (233)
239 2r6a_A DNAB helicase, replicat 96.1 0.005 1.7E-07 66.9 5.7 29 324-352 199-227 (454)
240 2if2_A Dephospho-COA kinase; a 96.1 0.0024 8.2E-08 61.0 2.7 30 330-360 3-32 (204)
241 2z0h_A DTMP kinase, thymidylat 96.0 0.0035 1.2E-07 59.2 3.7 30 331-360 3-35 (197)
242 1vma_A Cell division protein F 96.0 0.0079 2.7E-07 62.0 6.4 27 326-352 102-128 (306)
243 2plr_A DTMP kinase, probable t 96.0 0.0035 1.2E-07 59.7 3.5 28 328-355 4-31 (213)
244 2qor_A Guanylate kinase; phosp 96.0 0.0036 1.2E-07 60.0 3.4 30 324-353 8-37 (204)
245 3foz_A TRNA delta(2)-isopenten 95.9 0.0039 1.3E-07 64.3 3.7 37 328-364 10-46 (316)
246 2fz4_A DNA repair protein RAD2 95.9 0.0064 2.2E-07 60.0 5.2 31 330-360 110-140 (237)
247 3cf0_A Transitional endoplasmi 95.9 0.0045 1.5E-07 63.3 4.2 69 212-280 209-285 (301)
248 1uf9_A TT1252 protein; P-loop, 95.9 0.0036 1.2E-07 59.4 3.2 31 328-359 8-38 (203)
249 3ake_A Cytidylate kinase; CMP 95.9 0.0041 1.4E-07 59.2 3.5 30 330-359 4-33 (208)
250 3rlf_A Maltose/maltodextrin im 95.9 0.0042 1.4E-07 66.0 3.8 28 325-352 26-53 (381)
251 2qt1_A Nicotinamide riboside k 95.9 0.0041 1.4E-07 59.6 3.4 34 327-360 20-54 (207)
252 1q57_A DNA primase/helicase; d 95.9 0.0091 3.1E-07 65.6 6.6 37 324-360 238-278 (503)
253 2r8r_A Sensor protein; KDPD, P 95.9 0.0062 2.1E-07 59.9 4.6 24 329-352 7-30 (228)
254 2grj_A Dephospho-COA kinase; T 95.8 0.0037 1.3E-07 59.9 2.9 32 329-360 13-44 (192)
255 2q6t_A DNAB replication FORK h 95.8 0.0063 2.2E-07 65.9 5.0 29 324-352 196-224 (444)
256 1vht_A Dephospho-COA kinase; s 95.8 0.0043 1.5E-07 59.9 3.3 31 328-359 4-34 (218)
257 1jjv_A Dephospho-COA kinase; P 95.8 0.0043 1.5E-07 59.3 3.3 28 330-358 4-31 (206)
258 3a8t_A Adenylate isopentenyltr 95.8 0.0045 1.5E-07 64.5 3.5 36 328-363 40-75 (339)
259 1p9r_A General secretion pathw 95.8 0.031 1E-06 60.1 10.0 69 328-396 167-245 (418)
260 2oap_1 GSPE-2, type II secreti 95.8 0.0085 2.9E-07 66.2 5.7 71 326-396 258-342 (511)
261 2j41_A Guanylate kinase; GMP, 95.7 0.0049 1.7E-07 58.6 3.2 27 326-352 4-30 (207)
262 4e22_A Cytidylate kinase; P-lo 95.7 0.0063 2.1E-07 60.6 4.0 30 328-357 27-56 (252)
263 1kgd_A CASK, peripheral plasma 95.6 0.006 2E-07 57.3 3.4 26 328-353 5-30 (180)
264 1uj2_A Uridine-cytidine kinase 95.6 0.0068 2.3E-07 60.2 4.0 29 328-356 22-50 (252)
265 1ltq_A Polynucleotide kinase; 95.6 0.0049 1.7E-07 62.7 2.9 31 329-359 3-34 (301)
266 1w36_D RECD, exodeoxyribonucle 95.6 0.017 5.8E-07 65.2 7.6 25 328-352 164-188 (608)
267 2xau_A PRE-mRNA-splicing facto 95.6 0.016 5.6E-07 67.1 7.5 62 289-351 70-132 (773)
268 2gxq_A Heat resistant RNA depe 95.6 0.026 8.8E-07 53.5 7.7 18 328-345 38-55 (207)
269 2yvu_A Probable adenylyl-sulfa 95.6 0.0075 2.6E-07 56.7 3.8 28 327-354 12-39 (186)
270 3zvl_A Bifunctional polynucleo 95.5 0.0065 2.2E-07 65.3 3.6 34 326-359 256-289 (416)
271 2h92_A Cytidylate kinase; ross 95.5 0.0067 2.3E-07 58.5 3.3 31 329-359 4-34 (219)
272 3c8u_A Fructokinase; YP_612366 95.5 0.0084 2.9E-07 57.7 3.8 28 326-353 20-47 (208)
273 1q3t_A Cytidylate kinase; nucl 95.4 0.0086 2.9E-07 58.8 3.8 32 327-358 15-46 (236)
274 2pl3_A Probable ATP-dependent 95.4 0.06 2.1E-06 52.3 9.9 54 290-345 24-79 (236)
275 3tr0_A Guanylate kinase, GMP k 95.4 0.008 2.7E-07 57.1 3.4 27 326-352 5-31 (205)
276 2v3c_C SRP54, signal recogniti 95.4 0.033 1.1E-06 60.1 8.6 35 327-361 98-135 (432)
277 1m7g_A Adenylylsulfate kinase; 95.4 0.0092 3.2E-07 57.4 3.8 35 326-360 23-61 (211)
278 3tau_A Guanylate kinase, GMP k 95.4 0.0084 2.9E-07 57.8 3.4 27 327-353 7-33 (208)
279 1t6n_A Probable ATP-dependent 95.4 0.12 4E-06 49.6 11.7 62 287-350 10-73 (220)
280 2f6r_A COA synthase, bifunctio 95.3 0.0073 2.5E-07 61.3 3.1 31 328-359 75-105 (281)
281 3asz_A Uridine kinase; cytidin 95.3 0.0093 3.2E-07 57.1 3.6 32 327-358 5-38 (211)
282 2qmh_A HPR kinase/phosphorylas 95.3 0.0087 3E-07 57.7 3.2 33 328-361 34-66 (205)
283 3exa_A TRNA delta(2)-isopenten 95.3 0.0092 3.1E-07 61.6 3.5 34 329-362 4-37 (322)
284 1ex7_A Guanylate kinase; subst 95.3 0.0096 3.3E-07 56.8 3.4 25 329-353 2-26 (186)
285 3d3q_A TRNA delta(2)-isopenten 95.3 0.0092 3.1E-07 62.3 3.5 33 329-361 8-40 (340)
286 1lvg_A Guanylate kinase, GMP k 95.2 0.0092 3.1E-07 57.1 3.2 26 327-352 3-28 (198)
287 2j37_W Signal recognition part 95.1 0.04 1.4E-06 60.6 8.1 35 327-361 100-137 (504)
288 1tf7_A KAIC; homohexamer, hexa 95.1 0.041 1.4E-06 60.8 8.3 25 324-348 35-59 (525)
289 2ki8_A Tungsten formylmethanof 95.0 0.034 1.2E-06 50.8 6.2 50 40-91 51-100 (146)
290 2bdt_A BH3686; alpha-beta prot 95.0 0.011 3.8E-07 55.6 3.1 24 330-353 4-27 (189)
291 2ce7_A Cell division protein F 95.0 0.0043 1.5E-07 67.9 0.2 52 212-280 209-260 (476)
292 2dhr_A FTSH; AAA+ protein, hex 95.0 0.0047 1.6E-07 68.0 0.5 89 211-325 223-315 (499)
293 1sky_E F1-ATPase, F1-ATP synth 95.0 0.035 1.2E-06 60.3 7.3 26 328-353 151-176 (473)
294 1tf7_A KAIC; homohexamer, hexa 95.0 0.04 1.4E-06 60.9 7.9 29 324-352 277-305 (525)
295 3eph_A TRNA isopentenyltransfe 95.0 0.013 4.3E-07 62.6 3.6 34 328-361 2-35 (409)
296 3e70_C DPA, signal recognition 94.9 0.059 2E-06 56.0 8.6 27 326-352 127-153 (328)
297 1hv8_A Putative ATP-dependent 94.9 0.076 2.6E-06 54.5 9.4 59 290-350 5-66 (367)
298 1htw_A HI0065; nucleotide-bind 94.9 0.016 5.5E-07 53.6 3.6 29 324-352 29-57 (158)
299 3fdi_A Uncharacterized protein 94.9 0.013 4.5E-07 56.3 3.2 30 329-358 7-36 (201)
300 1z6g_A Guanylate kinase; struc 94.8 0.013 4.6E-07 56.9 3.2 28 325-352 20-47 (218)
301 1w4r_A Thymidine kinase; type 94.8 0.02 6.7E-07 55.0 4.2 70 327-399 19-103 (195)
302 1rz3_A Hypothetical protein rb 94.8 0.022 7.5E-07 54.4 4.7 27 326-352 20-46 (201)
303 3bgw_A DNAB-like replicative h 94.8 0.024 8.4E-07 61.4 5.5 37 324-360 193-232 (444)
304 3a00_A Guanylate kinase, GMP k 94.8 0.014 4.6E-07 55.1 3.0 25 329-353 2-26 (186)
305 3thx_B DNA mismatch repair pro 94.8 0.03 1E-06 65.8 6.6 24 327-350 672-695 (918)
306 2glw_A PHS018, 92AA long hypot 94.8 0.028 9.4E-07 47.3 4.5 67 40-109 13-84 (92)
307 2jeo_A Uridine-cytidine kinase 94.7 0.017 5.9E-07 57.0 3.6 30 326-355 23-52 (245)
308 4gp7_A Metallophosphoesterase; 94.7 0.011 3.9E-07 55.0 2.1 24 325-348 6-29 (171)
309 3ney_A 55 kDa erythrocyte memb 94.6 0.019 6.6E-07 55.2 3.6 27 327-353 18-44 (197)
310 4b3f_X DNA-binding protein smu 94.5 0.031 1.1E-06 63.4 5.7 48 289-351 181-228 (646)
311 2v9p_A Replication protein E1; 94.5 0.019 6.6E-07 59.0 3.6 30 323-352 121-150 (305)
312 1gtv_A TMK, thymidylate kinase 94.5 0.01 3.5E-07 56.7 1.5 25 330-354 2-26 (214)
313 2gza_A Type IV secretion syste 94.5 0.03 1E-06 58.9 5.1 74 324-397 171-262 (361)
314 3b6e_A Interferon-induced heli 94.5 0.046 1.6E-06 51.8 5.9 23 329-351 49-71 (216)
315 3pey_A ATP-dependent RNA helic 94.4 0.11 3.7E-06 53.9 9.3 56 292-347 6-63 (395)
316 1s96_A Guanylate kinase, GMP k 94.4 0.02 6.9E-07 55.9 3.3 30 324-353 12-41 (219)
317 1znw_A Guanylate kinase, GMP k 94.4 0.02 7E-07 54.9 3.3 29 325-353 17-45 (207)
318 3b9q_A Chloroplast SRP recepto 94.4 0.027 9.3E-07 57.8 4.4 29 325-353 97-125 (302)
319 1cr0_A DNA primase/helicase; R 94.4 0.021 7.3E-07 57.9 3.5 30 323-352 30-59 (296)
320 3iuy_A Probable ATP-dependent 94.3 0.11 3.8E-06 50.1 8.5 18 328-345 57-74 (228)
321 3b9p_A CG5977-PA, isoform A; A 94.3 0.014 4.7E-07 59.1 1.9 66 211-281 212-277 (297)
322 1odf_A YGR205W, hypothetical 3 94.3 0.012 4.2E-07 60.0 1.5 29 326-354 29-57 (290)
323 3fe2_A Probable ATP-dependent 94.2 0.14 4.8E-06 50.0 9.1 54 289-345 27-83 (242)
324 2xxa_A Signal recognition part 94.2 0.07 2.4E-06 57.6 7.4 36 326-361 98-137 (433)
325 4eaq_A DTMP kinase, thymidylat 94.2 0.027 9.2E-07 55.3 3.7 28 327-354 25-52 (229)
326 3gmt_A Adenylate kinase; ssgci 94.2 0.024 8.3E-07 55.8 3.3 31 329-359 9-39 (230)
327 1x6v_B Bifunctional 3'-phospho 94.2 0.027 9.1E-07 63.5 4.0 34 328-361 52-88 (630)
328 2og2_A Putative signal recogni 94.1 0.033 1.1E-06 58.6 4.4 30 324-353 153-182 (359)
329 3lnc_A Guanylate kinase, GMP k 94.1 0.016 5.4E-07 56.5 1.8 28 325-352 24-52 (231)
330 1a7j_A Phosphoribulokinase; tr 94.1 0.02 6.7E-07 58.5 2.5 26 328-353 5-30 (290)
331 3d8b_A Fidgetin-like protein 1 94.0 0.012 4.1E-07 61.8 0.8 66 211-281 274-339 (357)
332 2va8_A SSO2462, SKI2-type heli 94.0 0.16 5.4E-06 58.1 10.2 58 289-347 6-65 (715)
333 1vt4_I APAF-1 related killer D 94.0 0.038 1.3E-06 65.6 4.8 43 297-351 131-173 (1221)
334 1xx6_A Thymidine kinase; NESG, 94.0 0.076 2.6E-06 50.7 6.3 71 328-399 8-93 (191)
335 1ls1_A Signal recognition part 93.9 0.1 3.6E-06 53.1 7.6 26 327-352 97-122 (295)
336 1c9k_A COBU, adenosylcobinamid 93.9 0.03 1E-06 53.1 3.1 32 331-363 2-33 (180)
337 3hdt_A Putative kinase; struct 93.8 0.03 1E-06 54.9 3.1 30 329-358 15-44 (223)
338 2yhs_A FTSY, cell division pro 93.7 0.032 1.1E-06 61.0 3.5 29 325-353 290-318 (503)
339 3ber_A Probable ATP-dependent 93.7 0.2 6.8E-06 49.4 9.0 55 290-346 42-98 (249)
340 1j8m_F SRP54, signal recogniti 93.7 0.096 3.3E-06 53.5 6.8 33 328-360 98-133 (297)
341 2zj8_A DNA helicase, putative 93.7 0.21 7.1E-06 57.2 10.4 20 327-346 38-57 (720)
342 1np6_A Molybdopterin-guanine d 93.7 0.038 1.3E-06 52.0 3.5 27 327-353 5-31 (174)
343 3thx_A DNA mismatch repair pro 93.6 0.048 1.6E-06 64.3 5.0 23 328-350 662-684 (934)
344 2axn_A 6-phosphofructo-2-kinas 93.6 0.037 1.3E-06 61.2 3.7 30 328-357 35-64 (520)
345 3cr8_A Sulfate adenylyltranfer 93.4 0.047 1.6E-06 60.7 4.2 28 326-353 367-394 (552)
346 3tif_A Uncharacterized ABC tra 93.2 0.033 1.1E-06 54.9 2.3 28 325-352 28-55 (235)
347 2ffh_A Protein (FFH); SRP54, s 93.2 0.21 7.2E-06 53.6 8.8 26 327-352 97-122 (425)
348 1sq5_A Pantothenate kinase; P- 93.2 0.049 1.7E-06 55.8 3.7 27 327-353 79-105 (308)
349 2cbz_A Multidrug resistance-as 93.1 0.034 1.2E-06 54.9 2.3 29 324-352 27-55 (237)
350 3fmo_B ATP-dependent RNA helic 93.1 0.33 1.1E-05 49.3 9.8 53 290-345 91-148 (300)
351 1wb9_A DNA mismatch repair pro 93.1 0.16 5.4E-06 59.0 8.1 24 328-351 607-630 (800)
352 1p5z_B DCK, deoxycytidine kina 93.1 0.026 8.9E-07 56.2 1.4 31 327-357 23-54 (263)
353 3aez_A Pantothenate kinase; tr 93.1 0.053 1.8E-06 55.9 3.7 28 326-353 88-115 (312)
354 3eiq_A Eukaryotic initiation f 93.0 0.29 1E-05 51.1 9.6 54 291-346 40-95 (414)
355 3ice_A Transcription terminati 93.0 0.12 4.2E-06 54.7 6.5 27 326-352 172-198 (422)
356 1m8p_A Sulfate adenylyltransfe 93.0 0.059 2E-06 60.3 4.1 34 328-361 396-433 (573)
357 2pcj_A ABC transporter, lipopr 92.9 0.033 1.1E-06 54.5 1.8 28 325-352 27-54 (224)
358 2ged_A SR-beta, signal recogni 92.9 0.096 3.3E-06 48.7 5.0 47 298-351 25-71 (193)
359 4f4c_A Multidrug resistance pr 92.9 0.14 4.7E-06 62.9 7.7 29 324-352 440-468 (1321)
360 2p6r_A Afuhel308 helicase; pro 92.9 0.12 4.2E-06 58.9 6.8 19 328-346 40-58 (702)
361 1rj9_A FTSY, signal recognitio 92.8 0.058 2E-06 55.4 3.6 27 327-353 101-127 (304)
362 3tqc_A Pantothenate kinase; bi 92.8 0.071 2.4E-06 55.2 4.3 27 327-353 91-117 (321)
363 3tqf_A HPR(Ser) kinase; transf 92.8 0.05 1.7E-06 51.2 2.7 24 328-351 16-39 (181)
364 1zu4_A FTSY; GTPase, signal re 92.8 0.061 2.1E-06 55.6 3.7 28 325-352 102-129 (320)
365 1bif_A 6-phosphofructo-2-kinas 92.8 0.056 1.9E-06 58.8 3.6 29 328-356 39-67 (469)
366 4f4c_A Multidrug resistance pr 92.8 0.11 3.9E-06 63.7 6.7 27 326-352 1103-1129(1321)
367 2ocp_A DGK, deoxyguanosine kin 92.8 0.056 1.9E-06 53.0 3.3 26 328-353 2-27 (241)
368 1xti_A Probable ATP-dependent 92.8 0.4 1.4E-05 49.7 10.0 22 328-349 45-66 (391)
369 3ly5_A ATP-dependent RNA helic 92.7 0.26 8.8E-06 48.9 8.1 19 328-346 91-109 (262)
370 2onk_A Molybdate/tungstate ABC 92.7 0.051 1.7E-06 53.8 2.8 28 324-352 21-48 (240)
371 1xjc_A MOBB protein homolog; s 92.6 0.07 2.4E-06 50.0 3.6 25 329-353 5-29 (169)
372 1b0u_A Histidine permease; ABC 92.6 0.046 1.6E-06 54.8 2.4 28 325-352 29-56 (262)
373 1mv5_A LMRA, multidrug resista 92.6 0.044 1.5E-06 54.2 2.2 29 324-352 24-52 (243)
374 3fvq_A Fe(3+) IONS import ATP- 92.5 0.051 1.7E-06 57.2 2.6 28 325-352 27-54 (359)
375 2zu0_C Probable ATP-dependent 92.4 0.057 2E-06 54.3 2.9 28 324-351 42-69 (267)
376 1sgw_A Putative ABC transporte 92.4 0.045 1.6E-06 53.2 2.0 28 325-352 32-59 (214)
377 2ghi_A Transport protein; mult 92.4 0.05 1.7E-06 54.5 2.3 29 324-352 42-70 (260)
378 3v9p_A DTMP kinase, thymidylat 92.4 0.087 3E-06 51.7 4.0 28 328-355 25-52 (227)
379 2d2e_A SUFC protein; ABC-ATPas 92.4 0.054 1.8E-06 53.9 2.5 27 325-351 26-52 (250)
380 2pze_A Cystic fibrosis transme 92.4 0.047 1.6E-06 53.6 2.1 29 324-352 30-58 (229)
381 2ixe_A Antigen peptide transpo 92.3 0.051 1.8E-06 54.8 2.3 29 324-352 41-69 (271)
382 2olj_A Amino acid ABC transpor 92.3 0.053 1.8E-06 54.5 2.4 29 324-352 46-74 (263)
383 1g6h_A High-affinity branched- 92.3 0.048 1.6E-06 54.5 2.0 28 325-352 30-57 (257)
384 2ff7_A Alpha-hemolysin translo 92.2 0.048 1.7E-06 54.2 2.0 28 325-352 32-59 (247)
385 2j0s_A ATP-dependent RNA helic 92.2 0.4 1.4E-05 50.2 9.3 55 291-347 37-93 (410)
386 1s2m_A Putative ATP-dependent 92.2 0.44 1.5E-05 49.7 9.5 56 290-347 20-77 (400)
387 1ji0_A ABC transporter; ATP bi 92.2 0.05 1.7E-06 53.8 2.0 28 325-352 29-56 (240)
388 3gfo_A Cobalt import ATP-bindi 92.1 0.051 1.7E-06 55.0 2.1 28 325-352 31-58 (275)
389 3tmk_A Thymidylate kinase; pho 92.1 0.11 3.6E-06 50.7 4.3 28 328-355 5-32 (216)
390 3d31_A Sulfate/molybdate ABC t 92.1 0.058 2E-06 56.5 2.5 28 325-352 23-50 (348)
391 3kta_A Chromosome segregation 92.1 0.081 2.8E-06 49.1 3.3 24 330-353 28-51 (182)
392 2it1_A 362AA long hypothetical 92.1 0.065 2.2E-06 56.4 2.9 28 325-352 26-53 (362)
393 4edh_A DTMP kinase, thymidylat 92.1 0.085 2.9E-06 51.2 3.6 27 328-354 6-32 (213)
394 3oiy_A Reverse gyrase helicase 92.1 0.47 1.6E-05 50.0 9.7 21 328-348 36-56 (414)
395 1ixz_A ATP-dependent metallopr 92.1 0.1 3.6E-06 51.3 4.3 45 212-273 209-253 (254)
396 2yyz_A Sugar ABC transporter, 92.1 0.065 2.2E-06 56.4 2.8 28 325-352 26-53 (359)
397 1v43_A Sugar-binding transport 92.0 0.067 2.3E-06 56.5 2.9 28 325-352 34-61 (372)
398 1z47_A CYSA, putative ABC-tran 92.0 0.061 2.1E-06 56.5 2.5 28 325-352 38-65 (355)
399 2qi9_C Vitamin B12 import ATP- 92.0 0.055 1.9E-06 53.9 2.1 28 325-352 23-50 (249)
400 4g1u_C Hemin import ATP-bindin 92.0 0.054 1.9E-06 54.5 2.0 28 325-352 34-61 (266)
401 1vpl_A ABC transporter, ATP-bi 92.0 0.06 2.1E-06 53.8 2.4 29 324-352 37-65 (256)
402 2yz2_A Putative ABC transporte 92.0 0.059 2E-06 54.1 2.3 29 324-352 29-57 (266)
403 3fht_A ATP-dependent RNA helic 91.8 0.55 1.9E-05 48.9 9.8 56 290-345 24-81 (412)
404 1lw7_A Transcriptional regulat 91.8 0.09 3.1E-06 55.1 3.6 27 328-354 170-196 (365)
405 1g8f_A Sulfate adenylyltransfe 91.8 0.076 2.6E-06 58.4 3.1 27 328-354 395-421 (511)
406 2ihy_A ABC transporter, ATP-bi 91.8 0.059 2E-06 54.6 2.1 28 325-352 44-71 (279)
407 2f1r_A Molybdopterin-guanine d 91.7 0.061 2.1E-06 50.4 2.0 26 329-354 3-28 (171)
408 1g29_1 MALK, maltose transport 91.7 0.069 2.4E-06 56.4 2.5 28 325-352 26-53 (372)
409 2nq2_C Hypothetical ABC transp 91.7 0.061 2.1E-06 53.6 2.0 28 325-352 28-55 (253)
410 3b85_A Phosphate starvation-in 91.6 0.071 2.4E-06 51.5 2.4 25 327-351 21-45 (208)
411 4a1f_A DNAB helicase, replicat 91.6 0.12 4.1E-06 53.8 4.2 37 324-360 42-81 (338)
412 3k53_A Ferrous iron transport 91.6 0.16 5.4E-06 50.8 4.9 23 329-351 4-26 (271)
413 3p32_A Probable GTPase RV1496/ 91.5 0.16 5.5E-06 53.0 5.1 25 328-352 79-103 (355)
414 1oxx_K GLCV, glucose, ABC tran 91.5 0.061 2.1E-06 56.5 1.8 28 325-352 28-55 (353)
415 3fmp_B ATP-dependent RNA helic 91.5 0.6 2E-05 50.3 9.8 54 291-345 92-148 (479)
416 2gk6_A Regulator of nonsense t 91.4 0.13 4.6E-06 58.0 4.7 24 329-352 196-219 (624)
417 2j9r_A Thymidine kinase; TK1, 91.4 0.2 6.7E-06 48.7 5.2 69 329-399 29-113 (214)
418 3vkw_A Replicase large subunit 91.4 0.28 9.5E-06 52.9 6.9 25 327-351 160-184 (446)
419 3gd7_A Fusion complex of cysti 91.3 0.081 2.8E-06 56.2 2.6 29 324-352 43-71 (390)
420 3h4m_A Proteasome-activating n 91.2 0.1 3.5E-06 52.1 3.2 51 211-278 210-260 (285)
421 4i1u_A Dephospho-COA kinase; s 91.2 0.1 3.5E-06 50.6 2.9 31 329-360 10-40 (210)
422 3nh6_A ATP-binding cassette SU 91.2 0.072 2.5E-06 54.8 2.0 29 324-352 76-104 (306)
423 2o8b_B DNA mismatch repair pro 91.2 0.22 7.5E-06 59.4 6.4 22 328-349 789-810 (1022)
424 2dyk_A GTP-binding protein; GT 91.1 0.11 3.8E-06 46.3 3.0 22 330-351 3-24 (161)
425 1nrj_B SR-beta, signal recogni 91.1 0.12 4.2E-06 49.1 3.4 25 328-352 12-36 (218)
426 3lv8_A DTMP kinase, thymidylat 90.9 0.12 4.1E-06 51.0 3.3 27 328-354 27-53 (236)
427 3ld9_A DTMP kinase, thymidylat 90.9 0.13 4.5E-06 50.3 3.5 28 327-354 20-47 (223)
428 3sop_A Neuronal-specific septi 90.9 0.11 3.6E-06 52.4 2.9 23 330-352 4-26 (270)
429 2bbs_A Cystic fibrosis transme 90.9 0.083 2.8E-06 53.8 2.1 29 324-352 60-88 (290)
430 2p5s_A RAS and EF-hand domain 90.9 0.12 4E-06 48.6 3.0 26 326-351 26-51 (199)
431 2wsm_A Hydrogenase expression/ 90.8 0.14 4.7E-06 49.0 3.4 26 328-353 30-55 (221)
432 1z2a_A RAS-related protein RAB 90.7 0.12 4.1E-06 46.4 2.9 24 328-351 5-28 (168)
433 2f9l_A RAB11B, member RAS onco 90.7 0.12 4E-06 48.7 2.9 23 329-351 6-28 (199)
434 1oix_A RAS-related protein RAB 90.6 0.11 3.9E-06 48.6 2.7 24 329-352 30-53 (191)
435 1pui_A ENGB, probable GTP-bind 90.6 0.069 2.4E-06 50.5 1.1 29 323-351 21-49 (210)
436 2pjz_A Hypothetical protein ST 90.6 0.098 3.4E-06 52.5 2.3 28 324-352 27-54 (263)
437 3dkp_A Probable ATP-dependent 90.6 0.6 2E-05 45.3 8.0 18 328-345 66-83 (245)
438 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.11 3.9E-06 56.3 2.9 28 325-352 135-162 (460)
439 3lxw_A GTPase IMAP family memb 90.4 0.31 1.1E-05 48.0 5.8 24 328-351 21-44 (247)
440 2db3_A ATP-dependent RNA helic 90.4 1.4 4.7E-05 47.0 11.3 53 289-344 54-109 (434)
441 1upt_A ARL1, ADP-ribosylation 90.2 0.17 5.8E-06 45.6 3.4 25 327-351 6-30 (171)
442 1u8z_A RAS-related protein RAL 90.2 0.14 4.9E-06 45.7 2.9 23 329-351 5-27 (168)
443 1kao_A RAP2A; GTP-binding prot 90.1 0.15 5.3E-06 45.4 3.0 23 329-351 4-26 (167)
444 3tui_C Methionine import ATP-b 90.1 0.13 4.5E-06 54.1 2.9 29 324-352 50-78 (366)
445 2hf9_A Probable hydrogenase ni 90.1 0.22 7.5E-06 47.7 4.3 25 328-352 38-62 (226)
446 2lkc_A Translation initiation 90.1 0.18 6E-06 45.9 3.4 25 327-351 7-31 (178)
447 2vp4_A Deoxynucleoside kinase; 90.0 0.15 5.2E-06 49.5 3.1 25 327-351 19-43 (230)
448 2ce2_X GTPase HRAS; signaling 90.0 0.15 5.1E-06 45.4 2.7 22 330-351 5-26 (166)
449 1ek0_A Protein (GTP-binding pr 89.9 0.14 4.8E-06 46.0 2.6 23 329-351 4-26 (170)
450 2wjy_A Regulator of nonsense t 89.9 0.22 7.4E-06 57.9 4.7 24 329-352 372-395 (800)
451 2zej_A Dardarin, leucine-rich 89.9 0.12 4.1E-06 48.0 2.1 22 330-351 4-25 (184)
452 2qm8_A GTPase/ATPase; G protei 89.8 0.19 6.5E-06 52.2 3.8 27 326-352 53-79 (337)
453 4tmk_A Protein (thymidylate ki 89.8 0.18 6E-06 49.0 3.3 27 328-354 3-29 (213)
454 3iby_A Ferrous iron transport 89.8 0.25 8.7E-06 49.1 4.6 22 330-351 3-24 (256)
455 2wji_A Ferrous iron transport 89.8 0.14 4.9E-06 46.5 2.6 23 329-351 4-26 (165)
456 1svi_A GTP-binding protein YSX 89.7 0.19 6.7E-06 46.5 3.5 25 327-351 22-46 (195)
457 2nzj_A GTP-binding protein REM 89.7 0.16 5.4E-06 46.0 2.7 23 329-351 5-27 (175)
458 1z0j_A RAB-22, RAS-related pro 89.7 0.18 6E-06 45.4 3.0 24 329-352 7-30 (170)
459 1ky3_A GTP-binding protein YPT 89.6 0.17 5.8E-06 46.1 2.9 24 328-351 8-31 (182)
460 1wms_A RAB-9, RAB9, RAS-relate 89.6 0.18 6E-06 45.9 3.0 24 328-351 7-30 (177)
461 2orv_A Thymidine kinase; TP4A 89.5 0.61 2.1E-05 45.8 6.9 69 328-399 19-102 (234)
462 2dpy_A FLII, flagellum-specifi 89.5 0.21 7.2E-06 53.9 4.0 29 326-354 155-183 (438)
463 2erx_A GTP-binding protein DI- 89.5 0.17 5.9E-06 45.5 2.8 23 329-351 4-26 (172)
464 1z08_A RAS-related protein RAB 89.4 0.19 6.3E-06 45.3 3.0 24 328-351 6-29 (170)
465 2gks_A Bifunctional SAT/APS ki 89.4 0.22 7.5E-06 55.3 4.1 27 328-354 372-398 (546)
466 2b6h_A ADP-ribosylation factor 89.4 0.21 7.3E-06 46.7 3.5 25 326-350 27-51 (192)
467 3a1s_A Iron(II) transport prot 89.3 0.29 9.9E-06 48.7 4.6 23 329-351 6-28 (258)
468 2wjg_A FEOB, ferrous iron tran 89.3 0.17 5.9E-06 46.6 2.7 23 329-351 8-30 (188)
469 2atv_A RERG, RAS-like estrogen 89.3 0.2 6.8E-06 46.8 3.2 25 327-351 27-51 (196)
470 1g16_A RAS-related protein SEC 89.3 0.18 6.1E-06 45.3 2.7 23 329-351 4-26 (170)
471 2qtf_A Protein HFLX, GTP-bindi 89.2 0.39 1.3E-05 50.4 5.7 24 329-352 180-203 (364)
472 1iy2_A ATP-dependent metallopr 89.2 0.27 9.3E-06 49.1 4.3 45 212-273 233-277 (278)
473 1lv7_A FTSH; alpha/beta domain 89.2 0.23 7.8E-06 48.9 3.7 48 212-276 205-252 (257)
474 2fwr_A DNA repair protein RAD2 89.1 0.22 7.5E-06 53.6 3.8 31 329-359 109-139 (472)
475 1wlf_A PEX1, peroxisome biogen 89.1 0.69 2.4E-05 43.5 6.8 70 83-161 23-94 (179)
476 1r2q_A RAS-related protein RAB 89.1 0.2 6.9E-06 44.9 3.0 23 329-351 7-29 (170)
477 1nij_A Hypothetical protein YJ 89.1 0.2 7E-06 51.4 3.3 24 329-352 5-28 (318)
478 2hxs_A RAB-26, RAS-related pro 89.1 0.21 7.3E-06 45.4 3.1 24 328-351 6-29 (178)
479 1c1y_A RAS-related protein RAP 89.1 0.2 7E-06 44.8 3.0 23 329-351 4-26 (167)
480 2gj8_A MNME, tRNA modification 89.1 0.18 6.3E-06 46.3 2.7 24 328-351 4-27 (172)
481 3bc1_A RAS-related protein RAB 89.0 0.2 6.9E-06 46.0 3.0 24 328-351 11-34 (195)
482 3q85_A GTP-binding protein REM 89.0 0.18 6.2E-06 45.4 2.6 21 330-350 4-24 (169)
483 1r8s_A ADP-ribosylation factor 88.9 0.21 7.3E-06 44.7 3.0 22 330-351 2-23 (164)
484 1moz_A ARL1, ADP-ribosylation 88.9 0.19 6.7E-06 45.9 2.7 24 327-350 17-40 (183)
485 2xzl_A ATP-dependent helicase 88.8 0.29 9.9E-06 56.9 4.7 22 330-351 377-398 (802)
486 2obl_A ESCN; ATPase, hydrolase 88.7 0.22 7.6E-06 52.0 3.3 29 326-354 69-97 (347)
487 2qag_B Septin-6, protein NEDD5 88.7 0.2 6.9E-06 53.8 3.1 26 326-351 38-65 (427)
488 3clv_A RAB5 protein, putative; 88.7 0.25 8.5E-06 45.7 3.3 24 328-351 7-30 (208)
489 2r62_A Cell division protease 88.7 0.14 4.8E-06 50.7 1.7 55 212-283 206-260 (268)
490 1fzq_A ADP-ribosylation factor 88.6 0.26 8.9E-06 45.5 3.5 24 328-351 16-39 (181)
491 1qhl_A Protein (cell division 88.6 0.11 3.6E-06 51.1 0.7 23 331-353 30-52 (227)
492 1ko7_A HPR kinase/phosphatase; 88.6 0.23 7.8E-06 51.2 3.2 28 328-356 144-171 (314)
493 1ksh_A ARF-like protein 2; sma 88.6 0.19 6.6E-06 46.2 2.5 25 327-351 17-41 (186)
494 2a9k_A RAS-related protein RAL 88.5 0.22 7.5E-06 45.5 2.9 24 328-351 18-41 (187)
495 1z0f_A RAB14, member RAS oncog 88.5 0.23 7.9E-06 45.0 3.0 24 328-351 15-38 (179)
496 2y8e_A RAB-protein 6, GH09086P 88.5 0.22 7.4E-06 45.2 2.7 23 329-351 15-37 (179)
497 3b1v_A Ferrous iron uptake tra 88.5 0.36 1.2E-05 48.5 4.6 23 329-351 4-26 (272)
498 1dek_A Deoxynucleoside monopho 88.5 0.21 7.1E-06 49.5 2.8 28 330-357 3-30 (241)
499 2fn4_A P23, RAS-related protei 88.4 0.22 7.6E-06 45.2 2.8 23 329-351 10-32 (181)
500 4dsu_A GTPase KRAS, isoform 2B 88.4 0.22 7.5E-06 45.7 2.7 23 329-351 5-27 (189)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.4e-102 Score=899.52 Aligned_cols=606 Identities=75% Similarity=1.220 Sum_probs=451.6
Q ss_pred CCcchhHHhhhccCCCeeEeccccCCCCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeeeHhh
Q 007053 14 KRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVV 93 (620)
Q Consensus 14 ~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (620)
+.|++|||+++|+.||+|+|+++.++++++|||+|++|++||+++||+|+|+|++++.++|.+++.++++.+.|+||+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 88 (806)
T 3cf2_A 9 GDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVV 88 (806)
T ss_dssp ------------CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHH
T ss_pred CCCchhhhhhccCCCceEEEccCCCCCCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeCHHH
Confidence 34899999999999999999999988899999999999999999999999999998888888888899999999999999
Q ss_pred hcccccccCCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEe
Q 007053 94 RSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIET 173 (620)
Q Consensus 94 r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~ 173 (620)
|+|+|+++||.|+|+++.++++|++|+|+|+.+++..+.+..+..|+++||...++||..||+|.|..+++.+.|+|++|
T Consensus 89 r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~ 168 (806)
T 3cf2_A 89 RNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVET 168 (806)
T ss_dssp HHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEE
T ss_pred HHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEE
Confidence 99999999999999997789999999999998888777788889999999998899999999999999899999999999
Q ss_pred CCCCceeecCCceEeeCCCcccccccc-ccccCCcccccchhh-------------------------------------
Q 007053 174 DPPEYCVVAPDTEIFCEGEPVRREDEN-RLDEVGYDDVGGVRK------------------------------------- 215 (620)
Q Consensus 174 ~p~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~~~ig~l~~------------------------------------- 215 (620)
+|.++|+|+++|.|.+.+.|..+..++ ....|+|+||||+++
T Consensus 169 ~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPG 248 (806)
T 3cf2_A 169 DPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG 248 (806)
T ss_dssp SSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTT
T ss_pred eCCCCeEECCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCC
Confidence 999999999999999998887654433 467899999999987
Q ss_pred --------------------------------------------------------------------------------
Q 007053 216 -------------------------------------------------------------------------------- 215 (620)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (620)
T Consensus 249 TGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~L 328 (806)
T 3cf2_A 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL 328 (806)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------------------hhccccCcch
Q 007053 216 ----------------------------------------------------------------------IAKDTHGYVG 225 (620)
Q Consensus 216 ----------------------------------------------------------------------lA~~t~gf~G 225 (620)
||..|+||+|
T Consensus 329 L~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp HTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCH
T ss_pred HHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCH
Confidence 8999999999
Q ss_pred hhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccccccccchHHHHHH
Q 007053 226 ADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRE 305 (620)
Q Consensus 226 aDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~ 305 (620)
|||++||++|++.|++|.++.++........+.++.+.|+++||..|+..+.|+++++...+.|+++|++|+|+++++++
T Consensus 409 aDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhc
Q 007053 306 LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 385 (620)
Q Consensus 306 L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~ 385 (620)
|++.+.+|+.+++.|.++|+.+++++|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++++|..|+.
T Consensus 489 l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568 (806)
T ss_dssp HTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCC
Q 007053 386 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465 (620)
Q Consensus 386 ~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P 465 (620)
..||||||||||+|++.|+...++.++..++++++||++||++....+|+||+|||+|+.||++++|||||++.|+|++|
T Consensus 569 ~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 99999999999999998876544555678899999999999999989999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccch
Q 007053 466 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEV 545 (620)
Q Consensus 466 ~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (620)
+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++.+................+........
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------C
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999876543222111111111111112234
Q ss_pred hhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCCCccccCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCC
Q 007053 546 AEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGA--D--GGSDPFASSAGGADDDDLYS 620 (620)
Q Consensus 546 ~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~~~~~~~p~k~pe~~~~~~--~--~~~~~~~~~~~~~~~~~~~~ 620 (620)
..|+++||++|+++++|||+.+++..|++|.++|++++++|+ +++|++...+. . ++++..+...+.+++||||.
T Consensus 729 ~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (806)
T 3cf2_A 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 806 (806)
T ss_dssp CC----CCTTTC---------------CCCC------------------------------------------------
T ss_pred CccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCccc-cccCCCCcCCCCCCCCCCCcccccccCCCCcccccC
Confidence 579999999999999999999999999999999999999955 89998754322 1 11111111123567889994
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1e-84 Score=761.31 Aligned_cols=607 Identities=75% Similarity=1.216 Sum_probs=469.0
Q ss_pred CCCcchhHHhhhccCCCeeEeccccCCCCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeeeHh
Q 007053 13 TKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKV 92 (620)
Q Consensus 13 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (620)
++++++|+|+++++.|++|+|+++.+++.|+|||||++|++||+++||+|+|+|+|++.|+|+||+.++++.++|+||+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (806)
T 1ypw_A 8 KGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRV 87 (806)
T ss_dssp ---------CCCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCHH
T ss_pred cccccchhHHhccCCCceEEEccCcCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEEecHH
Confidence 34689999999999999999999998777999999999999999999999999999888999999998899999999999
Q ss_pred hhcccccccCCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEE
Q 007053 93 VRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIE 172 (620)
Q Consensus 93 ~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~ 172 (620)
+|.|+|+++||+|+|+++.++++|++|+++|+.+++.++.+.+|..|++++|.+.++||.+||++.+..+.+.+.|+|++
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ 167 (806)
T 1ypw_A 88 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167 (806)
T ss_dssp HHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEE
T ss_pred HHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEe
Confidence 99999999999999999658999999999999888877777788899999998888999999999999888899999999
Q ss_pred eCCCCceeecCCceEeeCCCccccccc-cccccCCcccccchhh------------------------------------
Q 007053 173 TDPPEYCVVAPDTEIFCEGEPVRREDE-NRLDEVGYDDVGGVRK------------------------------------ 215 (620)
Q Consensus 173 ~~p~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~ig~l~~------------------------------------ 215 (620)
+.|.++|+++++|.+.+..+++.+... +....++|+|++|+++
T Consensus 168 ~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~ 247 (806)
T 1ypw_A 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPP 247 (806)
T ss_dssp ETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCT
T ss_pred ccCCCCceecCCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcC
Confidence 999999999999999998888765432 2456799999999876
Q ss_pred --------------------------------------------------------------------------------
Q 007053 216 -------------------------------------------------------------------------------- 215 (620)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (620)
T Consensus 248 GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ 327 (806)
T 1ypw_A 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQ 327 (806)
T ss_dssp TSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------------------hhccccCcc
Q 007053 216 -----------------------------------------------------------------------IAKDTHGYV 224 (620)
Q Consensus 216 -----------------------------------------------------------------------lA~~t~gf~ 224 (620)
+|..|+||+
T Consensus 328 Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCC
T ss_pred HHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcc
Confidence 678899999
Q ss_pred hhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccccccccchHHHHH
Q 007053 225 GADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKR 304 (620)
Q Consensus 225 GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~ 304 (620)
|+|+..+|++|++.++++....+......+..+....+.++.+||..++....|+..++...+.+.++|++++|++++++
T Consensus 408 g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred hHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 99999999999999999988877776666777778889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhh
Q 007053 305 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 384 (620)
Q Consensus 305 ~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~ 384 (620)
.|.+++.+++.+++.|..+++.++.++||+||||||||+||+++|++++.+|+.++++++.++|+|+++..++.+|+.++
T Consensus 488 ~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~ 567 (806)
T 1ypw_A 488 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567 (806)
T ss_dssp HHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHH
T ss_pred hHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeC
Q 007053 385 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~ 464 (620)
...||||||||||.+...++...++......+++++||..|++.....+++||+|||+++.||++++|||||+..|+|++
T Consensus 568 ~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~ 647 (806)
T 1ypw_A 568 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647 (806)
T ss_dssp HHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCC
T ss_pred hcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCC
Confidence 99999999999999988775432222346788999999999999888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccc
Q 007053 465 PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDE 544 (620)
Q Consensus 465 P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 544 (620)
|+.++|.+||+.++++.++..++++..|++.+.|||++||.++|++|++.|+++.+................+.......
T Consensus 648 p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (806)
T 1ypw_A 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 727 (806)
T ss_dssp CCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------C
T ss_pred CCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999876543322211111111111111223
Q ss_pred hhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCCCccccCCCCCCC--CCCCCCC--CCCCCCCCCCCCCCC
Q 007053 545 VAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPG--ADGGSDP--FASSAGGADDDDLYS 620 (620)
Q Consensus 545 ~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~~~~~~~p~k~pe~~~~~--~~~~~~~--~~~~~~~~~~~~~~~ 620 (620)
...|+.+||+.|++.++|+++.+++..|++|.++|+++++++. +++|.....+ +.+++++ .++..+.+++|+||+
T Consensus 728 ~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (806)
T 1ypw_A 728 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 806 (806)
T ss_dssp CTTTTTTSSCCCCCC-----------------------------------------------------------------
T ss_pred cCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhccCCc-eecCCcccccCCCCCCCCCCCCCCCCCcccchhhcC
Confidence 4579999999999999999999999999999999999999864 8888764321 2222221 222223678889995
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.8e-70 Score=601.97 Aligned_cols=469 Identities=50% Similarity=0.881 Sum_probs=394.2
Q ss_pred ccCCCcchhHHhhhccCCCeeEeccccCCCCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeee
Q 007053 11 KGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMN 90 (620)
Q Consensus 11 ~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~ 90 (620)
..++++++|||+++++.||+|+|+++.+++.|+|||||+.|++||+++||+|+|+|++++.|+|.+|+.++++.+.|+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 85 (489)
T 3hu3_A 6 DSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMN 85 (489)
T ss_dssp -----------CCCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECC
T ss_pred cccccccchhhhhcccCCCeeEEccCCCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEEec
Confidence 34567999999999999999999999988789999999999999999999999999998899999999988999999999
Q ss_pred HhhhcccccccCCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEE
Q 007053 91 KVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKV 170 (620)
Q Consensus 91 ~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v 170 (620)
+.+|.|+|+++||+|+|+++.++++|++|+|+|+.+.++.+....|+-++|++.....+++..||.+.+..+++.++|++
T Consensus 86 ~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (489)
T 3hu3_A 86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKV 165 (489)
T ss_dssp HHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEE
T ss_pred HHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEE
Confidence 99999999999999999996689999999999998888777667788899999887889999999999999899999999
Q ss_pred EEeCCCCceeecCCceEeeCCCccccccccccccCCcccccchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccC
Q 007053 171 IETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 250 (620)
Q Consensus 171 ~~~~p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ig~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~ 250 (620)
..+.|.+.+.++++|.+.+.++|..+...
T Consensus 166 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------------------------------------------- 194 (489)
T 3hu3_A 166 VETDPSPYCIVAPDTVIHCEGEPIKREDE--------------------------------------------------- 194 (489)
T ss_dssp EEEESSSEEEECTTCEEECCSSCBCHHHH---------------------------------------------------
T ss_pred EeecCCCceEEcCCeEEEEccCccccccc---------------------------------------------------
Confidence 99999999999999999987554321100
Q ss_pred CccccHHHHhhhccChHHHHHhhccCCccccccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCce
Q 007053 251 DETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKG 330 (620)
Q Consensus 251 ~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~ 330 (620)
....+.++|++|+|++.++++|++++.+++.+++.|..+|..++.+
T Consensus 195 ----------------------------------~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~ 240 (489)
T 3hu3_A 195 ----------------------------------EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240 (489)
T ss_dssp ----------------------------------HHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCE
T ss_pred ----------------------------------ccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCc
Confidence 0011356899999999999999999999999999999999999999
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCC
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA 410 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~ 410 (620)
+|||||||||||++|+++|++++.+|+.++|+++.+.++|+.+..++.+|..|....|++|||||||.|.++++.. .
T Consensus 241 vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~ 317 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---H 317 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---C
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876433 2
Q ss_pred CCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChH
Q 007053 411 GGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLR 490 (620)
Q Consensus 411 ~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~ 490 (620)
+....+++++|+..|++.....+++||+|||+++.|+++++++|||+..+++++|+.++|.+||+.+++..++..+.++.
T Consensus 318 ~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~ 397 (489)
T 3hu3_A 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLE 397 (489)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHH
T ss_pred chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHH
Confidence 34667899999999998887889999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhh--------
Q 007053 491 ALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR-------- 562 (620)
Q Consensus 491 ~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p-------- 562 (620)
.++..+.||+++||..||++|++.|+++..... ................++.+||..|++.++|
T Consensus 398 ~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i--------~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~ 469 (489)
T 3hu3_A 398 QVANETHGHVGADLAALCSEAALQAIRKKMDLI--------DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV 469 (489)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC--------CTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhccccc--------cccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccc
Confidence 999999999999999999999999998753210 0000000000112346999999999998874
Q ss_pred ---cCChHHHHHHHHH
Q 007053 563 ---SVSDADIRKYQAF 575 (620)
Q Consensus 563 ---svs~~di~~~e~~ 575 (620)
+|+|+|||||.+.
T Consensus 470 e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 470 EVPQVTWEDIGGRSHH 485 (489)
T ss_dssp ----------------
T ss_pred cCCCCCHHHcCCCccc
Confidence 6999999999764
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-54 Score=464.80 Aligned_cols=276 Identities=38% Similarity=0.686 Sum_probs=249.7
Q ss_pred CCccccccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc
Q 007053 276 SNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 276 ~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
+.|+..+....+.|+++|+||||+++++++|++.+.+|+.+|++|.++|+.+|+|+|||||||||||+||+|+|++++.+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 45666677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEE
Q 007053 356 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 435 (620)
Q Consensus 356 ~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~vi 435 (620)
|+.++++++.++|+|++++.++.+|..|+..+||||||||+|.+++.|....+.......+++++||+.||++....+++
T Consensus 210 f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 99999999999999999999999999999999999999999999988866544434456789999999999999989999
Q ss_pred EEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 436 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 436 VIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 007053 516 IRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFA 576 (620)
Q Consensus 516 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k 576 (620)
+++. ...|+.+||+.|++++.++.....+..++.||
T Consensus 370 ir~~-------------------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~k 405 (405)
T 4b4t_J 370 LRER-------------------------RIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405 (405)
T ss_dssp HHTT-------------------------CSBCCHHHHHHHHHHHHHHHTCC---------
T ss_pred HHcC-------------------------CCCcCHHHHHHHHHHHhCccccccchhHhhhC
Confidence 8763 23599999999999998876666665555543
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.5e-53 Score=489.80 Aligned_cols=297 Identities=36% Similarity=0.627 Sum_probs=269.0
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
....|.++|+||||+++++++|++++.+|+.+|++|.++|+.+|+|||||||||||||+||+++|++++.+|+.++++++
T Consensus 195 ~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred cccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
+++|.|+++..++.+|+.|+...||||||||||.|+++++... +....+++++|+++|+++....+|+||+|||+++
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred hcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChh
Confidence 9999999999999999999999999999999999998876542 3467899999999999999889999999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.||++++|||||++.|++++|+.++|.+||+.++++.++..++++..||..|+||+|+||.+||++|++.|+++......
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754210
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhh-----------cCChHHHHHHHHHHHHHhhhcCCCCccccCC
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR-----------SVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 593 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p-----------svs~~di~~~e~~k~~l~~~~~~~~p~k~pe 593 (620)
.... ...........++.+||..|++.++| +++|+||++++++|+++++.+.| |++||+
T Consensus 432 ------~~~~--~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~--p~~~p~ 501 (806)
T 3cf2_A 432 ------LEDE--TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY--PVEHPD 501 (806)
T ss_dssp ------GTCC--CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT--TTTCSG
T ss_pred ------cccc--ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHh--hhhCHH
Confidence 0000 00000112346899999999998875 58999999999999999999999 999999
Q ss_pred C
Q 007053 594 A 594 (620)
Q Consensus 594 ~ 594 (620)
.
T Consensus 502 ~ 502 (806)
T 3cf2_A 502 K 502 (806)
T ss_dssp G
T ss_pred H
Confidence 6
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-52 Score=450.28 Aligned_cols=265 Identities=36% Similarity=0.646 Sum_probs=247.7
Q ss_pred ccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 282 RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 282 r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
.....+.|+++|+||||+++++++|++.+.+|+.+|+.|.++|+.+|+|||||||||||||+||+|+|++++.+|+.+++
T Consensus 170 ~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 170 VMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp CCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred eeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 362 PELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 362 ~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
++++++|+|++++.++.+|..|+..+||||||||+|.+++.|.......+....+++++||+.||+.....+++||+|||
T Consensus 250 s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 250 SELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp GGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred HHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998876544445567889999999999999889999999999
Q ss_pred CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 442 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 442 ~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
+|+.||||++||||||+.|+|++|+.++|.+||+.|+++.++..++++..||+.|+||||+||.++|++|++.|+++.
T Consensus 330 rpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~-- 407 (437)
T 4b4t_I 330 KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER-- 407 (437)
T ss_dssp CSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred ChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred HHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHH
Q 007053 522 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRK 571 (620)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~ 571 (620)
...|+.+||..|++++.|+.+.+++.+
T Consensus 408 -----------------------~~~It~eDf~~Al~rv~~~~~~e~le~ 434 (437)
T 4b4t_I 408 -----------------------RMQVTAEDFKQAKERVMKNKVEENLEG 434 (437)
T ss_dssp -----------------------CSCBCHHHHHHHHHHHHHHHCCCSSSS
T ss_pred -----------------------CCccCHHHHHHHHHHHhCCCChhhHHh
Confidence 235999999999999999887766543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-51 Score=446.54 Aligned_cols=271 Identities=40% Similarity=0.671 Sum_probs=246.4
Q ss_pred CccccccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 277 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 277 ~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
.|........+.|+++|+||||+++++++|++.+.+|+.+|++|.++|+.+|+|||||||||||||+||+|+|++++++|
T Consensus 164 d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 164 DPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp CCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34444556778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEE
Q 007053 357 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 436 (620)
Q Consensus 357 i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viV 436 (620)
+.+++++++++|+|+++..++.+|..|+...||||||||+|.+++.|.......+....+++++||+.||++....+++|
T Consensus 244 ~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 244 IFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp EEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred EEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE
Confidence 99999999999999999999999999999999999999999999888665444445677889999999999998889999
Q ss_pred EccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHH
Q 007053 437 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 516 (620)
Q Consensus 437 IatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~ 516 (620)
|+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|+++.++..++++..||+.|+||||+||.++|++|++.|+
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHH
Q 007053 517 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKY 572 (620)
Q Consensus 517 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~ 572 (620)
++. ...|+.+||..|++++.|+.+.+....|
T Consensus 404 r~~-------------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~ 434 (437)
T 4b4t_L 404 RDD-------------------------RDHINPDDLMKAVRKVAEVKKLEGTIEY 434 (437)
T ss_dssp HTT-------------------------CSSBCHHHHHHHHHHHHHTCC-------
T ss_pred HcC-------------------------CCCCCHHHHHHHHHHHHhccCcccchhh
Confidence 763 2359999999999999998765544444
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-51 Score=443.39 Aligned_cols=264 Identities=38% Similarity=0.644 Sum_probs=244.6
Q ss_pred ccccccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 278 PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 278 ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
|........+.|+++|+||||+++++++|++.+.+|+.+|++|.++|+++|+|||||||||||||++|+|+|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp CSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 33334456678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 358 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 358 ~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
.++++++.++|+|++++.++.+|..|+..+||||||||+|.+++.|............+++++||+.||++....+|+||
T Consensus 245 ~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 245 KLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp EEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred EEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999998886543333345677899999999999988899999
Q ss_pred ccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 007053 438 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 517 (620)
Q Consensus 438 atTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~ 517 (620)
+|||+|+.||||++|||||++.|+|++|+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|++
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCCh
Q 007053 518 ENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSD 566 (620)
Q Consensus 518 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~ 566 (620)
+. ...|+.+||..|+++++|+.+.
T Consensus 405 ~~-------------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 405 NG-------------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HT-------------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred cC-------------------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 63 2358999999999999998663
No 9
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-51 Score=441.34 Aligned_cols=265 Identities=35% Similarity=0.661 Sum_probs=239.9
Q ss_pred ceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 284 ~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
...+.|+++|+||||+++++++|++.+.+|+.+|++|.++|+.+|+|||||||||||||+||+|+|++++.+|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
++++|+|++++.++.+|..|+..+||||||||+|.++..|............+++++||+.|++.....+++||+|||+|
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 99999999999999999999999999999999999998886554333445677889999999999988999999999999
Q ss_pred CCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007053 444 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 523 (620)
Q Consensus 444 ~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~ 523 (620)
+.||+|++|||||++.|+|++|+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCC-hHHHHHHH
Q 007053 524 IERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS-DADIRKYQ 573 (620)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs-~~di~~~e 573 (620)
...++.+||..|++++.++.. +.....|.
T Consensus 435 ---------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~ 464 (467)
T 4b4t_H 435 ---------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYM 464 (467)
T ss_dssp ---------------------CSSBCHHHHHHHHHHHHHHHCC--------
T ss_pred ---------------------CCccCHHHHHHHHHHHhcCcccchhHHHHH
Confidence 235899999999999876443 33344443
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-50 Score=438.14 Aligned_cols=262 Identities=40% Similarity=0.650 Sum_probs=243.3
Q ss_pred cceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCc
Q 007053 283 ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362 (620)
Q Consensus 283 ~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~ 362 (620)
....+.|+++|+||||+++++++|++.+.+|+.+|+.|.++|+.+|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
++.++|+|+++..++.+|..|+..+||||||||+|.+++.|.......+....+++++||+.||++....+++||+|||+
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999988665555556778999999999999988889999999999
Q ss_pred CCCCcccccCCCCCCceeeee-CCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 443 PDIIDPALLRPGRLDQLIYIP-LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 443 ~~~Ld~al~rpgRf~~~i~~~-~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
|+.||||++|||||++.|+|| +|+.++|..||+.++++.++..++++..||..|+||||+||.++|++|++.|+++.
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~-- 398 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-- 398 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--
Confidence 999999999999999999996 89999999999999999999999999999999999999999999999999999763
Q ss_pred HHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHH-HhhcCChHHH
Q 007053 522 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY-ARRSVSDADI 569 (620)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~-~~psvs~~di 569 (620)
...|+.+||+.|+.. ++++.+.+++
T Consensus 399 -----------------------~~~i~~~d~~~A~~~~~~~~~~~~~~ 424 (428)
T 4b4t_K 399 -----------------------RYVILQSDLEEAYATQVKTDNTVDKF 424 (428)
T ss_dssp -----------------------CSSBCHHHHHHHHHHHSCSCCCSSCC
T ss_pred -----------------------CCCCCHHHHHHHHHHhhCccCCccHh
Confidence 235899999999976 4666665544
No 11
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=100.00 E-value=1.7e-46 Score=367.64 Aligned_cols=200 Identities=70% Similarity=1.252 Sum_probs=165.4
Q ss_pred CCCcchhHHhhhccCCCeeEeccccCCCCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeeeHh
Q 007053 13 TKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKV 92 (620)
Q Consensus 13 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (620)
++++++||||++|+.||+|+|++|.+++||+|||||++|++||+++||+|+|+|+|++.|+|+||+.++++.++||||+.
T Consensus 11 ~~~~~~~~~~~~~~~p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~ 90 (211)
T 3qwz_A 11 KGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRV 90 (211)
T ss_dssp ---------------CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHH
T ss_pred cccccchhhhhcccCCCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHH
Confidence 34699999999999999999999998789999999999999999999999999999889999999999999999999999
Q ss_pred hhcccccccCCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEE
Q 007053 93 VRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIE 172 (620)
Q Consensus 93 ~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~ 172 (620)
+|+||||++||+|+|+++.++++|++|+|+|+.++++++.+++|..||++||.+.+|||++||.|.|...++.++|+|++
T Consensus 91 ~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~ 170 (211)
T 3qwz_A 91 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVE 170 (211)
T ss_dssp HHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEE
T ss_pred HHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEe
Confidence 99999999999999999548999999999999888877777788999999998778999999999999889999999999
Q ss_pred eCCCCceeecCCceEeeCCCccccccc-cccccCCcccccc
Q 007053 173 TDPPEYCVVAPDTEIFCEGEPVRREDE-NRLDEVGYDDVGG 212 (620)
Q Consensus 173 ~~p~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~ig~ 212 (620)
|+|+++|+|+++|+|.|.++|+++.++ +...+|+||||||
T Consensus 171 t~P~g~viV~~~T~I~~~~~pv~~~~~e~~~~~VtYeDIGG 211 (211)
T 3qwz_A 171 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 211 (211)
T ss_dssp EESSSEEEECTTCEEECCSCCBCCCGGGSCCC---------
T ss_pred ecCCCCEEECCCcEEEEcCcccccccccccCCCcceeCCCC
Confidence 999999999999999999999987653 3678999999998
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.3e-45 Score=381.64 Aligned_cols=300 Identities=82% Similarity=1.284 Sum_probs=260.2
Q ss_pred cccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 281 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 281 ~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
+|+...+.|+++|++|+|++.++++|++++.+|+.+++.|..+++.+++++|||||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 361 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 361 ~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
++++.+.|+|+++..++.+|..++...|+||||||+|.+.+.++....+.+....+++++|+..|+++....+++||+||
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 99999999999999999999999999999999999999998876544444456678999999999988777789999999
Q ss_pred CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHH
Q 007053 441 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 441 n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
|+++.||++++|+|||+..+++++|+.++|.+||+.+++..++..++++..++..++||+|+||.++|++|++.|+++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999876
Q ss_pred HHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Q 007053 521 EKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 580 (620)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~ 580 (620)
................+..........|+.+||..|++.++|+++++++..|++|+++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 543211100000000000000112346999999999999999999999999999999874
No 13
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=100.00 E-value=2.9e-42 Score=332.04 Aligned_cols=179 Identities=71% Similarity=1.252 Sum_probs=153.5
Q ss_pred CCCcchhHHhhhccCCCeeEeccccCCCCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeeeHh
Q 007053 13 TKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKV 92 (620)
Q Consensus 13 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (620)
+++|++||||++|+.||+|+|++|.++++|+|||||++|++||+++||+|+|+|+|++.|+|+||+.++++.+.||||+.
T Consensus 8 ~~~~~~~~~~~~~~~p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~ 87 (187)
T 3tiw_A 8 KSDDLSTAILKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRV 87 (187)
T ss_dssp --------------CCCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHH
T ss_pred cccccchhhhhcccCCCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCHH
Confidence 44699999999999999999999998889999999999999999999999999999889999999999999999999999
Q ss_pred hhcccccccCCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEE
Q 007053 93 VRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIE 172 (620)
Q Consensus 93 ~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~ 172 (620)
+|+|||+++||+|+|+++.++++|++|+|+|+.++++++.+++|..||++||.+.+|||++||.|.|..+++.++|+|++
T Consensus 88 ~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~ 167 (187)
T 3tiw_A 88 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167 (187)
T ss_dssp HHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEE
T ss_pred HHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEE
Confidence 99999999999999999548999999999999888776777788999999998778999999999999989999999999
Q ss_pred eCCCCceeecCCceEeeCC
Q 007053 173 TDPPEYCVVAPDTEIFCEG 191 (620)
Q Consensus 173 ~~p~~~~~~~~~t~~~~~~ 191 (620)
|+|+++|+|+++|+|.|.+
T Consensus 168 t~P~~~v~V~~~T~I~~eg 186 (187)
T 3tiw_A 168 TDPSPYCIVAPDTVIHCEG 186 (187)
T ss_dssp EESSSEEECCTTCEEECCC
T ss_pred ecCCCCEEECCCcEEEecC
Confidence 9999999999999999965
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-42 Score=361.49 Aligned_cols=291 Identities=35% Similarity=0.652 Sum_probs=245.6
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-hhceeeecCcc
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 363 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-~~~~i~i~~~~ 363 (620)
..+.|+++|+||+|++++++.|++.+.+|+.+++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45778999999999999999999999999999999875 45678999999999999999999999999 88999999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-CcceEEEEccCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 442 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-~~~~viVIatTn~ 442 (620)
+.++|.|+++..++.+|..++...|+||||||+|.+.+.++.. ......+++++|+..|+++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999776543 23467889999999999885 3568999999999
Q ss_pred CCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 443 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 443 ~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
++.+|++++| ||+..+++++|+.++|.+||+.+++..+.. .+.++..||+.|.||+|+||..+|++|++.|+++.+.
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999877653 5678999999999999999999999999999998643
Q ss_pred HHHHHHHHhc---------------cCCcc-----cc-ccc-cc--chhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 007053 522 KDIERERRRS---------------ENPEA-----ME-EDV-ED--EVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQ 577 (620)
Q Consensus 522 ~~~~~~~~~~---------------~~~~~-----~~-~~~-~~--~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~ 577 (620)
.......... +.... +. .+. .. ....|+++||..|++.++||++++++..|++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~ 316 (322)
T 1xwi_A 237 ATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316 (322)
T ss_dssp CSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 1000000000 00000 00 000 00 1236999999999999999999999999999999
Q ss_pred HHhh
Q 007053 578 TLQQ 581 (620)
Q Consensus 578 ~l~~ 581 (620)
+|.+
T Consensus 317 ~~~~ 320 (322)
T 1xwi_A 317 DFGQ 320 (322)
T ss_dssp TTCS
T ss_pred HHcc
Confidence 8854
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=347.02 Aligned_cols=266 Identities=49% Similarity=0.870 Sum_probs=217.7
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
+.|+++|+||+|+++++++|++.+.+|+.+++.|..+++..++|++|+||||||||+|++++|.+++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCC
Q 007053 367 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 446 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~L 446 (620)
.|.++.+..++.+|+.++...|+++|+||+|.+...++.. ......+++++++..|++......++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 8889888999999999988899999999999987654322 1123457889999999999888889999999999999
Q ss_pred cccccCCCCCCceeeeeCCChhHHHHHHHHhhcc---CCCCCCcChHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 447 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK---SPVSKDVDLRALAKYT--QGFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 447 d~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~---~~l~~dv~l~~LA~~t--~G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
|++++|||||++.|++++|+.++|.+||+.++++ .++..++++..+|..+ +||||+||.++|++|++.|+++.+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999854 4567789999999975 5999999999999999999988643
Q ss_pred HHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHH
Q 007053 522 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADI 569 (620)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di 569 (620)
..... .......|+.+||+.|+++++||++.+++
T Consensus 240 ~~~~~--------------~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 240 RQKSG--------------NEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ------------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred hcccc--------------ccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 21100 00123369999999999999999998764
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-40 Score=350.36 Aligned_cols=293 Identities=35% Similarity=0.651 Sum_probs=244.5
Q ss_pred cceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCc
Q 007053 283 ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362 (620)
Q Consensus 283 ~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~ 362 (620)
....+.|+++|++|+|++.+++.|++.+.+|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 3566789999999999999999999999999999999877 567789999999999999999999999999999999999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-CcceEEEEccCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATN 441 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-~~~~viVIatTn 441 (620)
++.+.|.|+++..++.+|..++...|+||||||+|.|.+.++.. ......+++++|+..|++.. ...+++||+|||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999998766433 23467889999999999874 456899999999
Q ss_pred CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHH
Q 007053 442 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 442 ~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
+++.||++++| ||+..+++++|+.++|.+||+.+++..+.. .+.++..|++.++||+++||..+|++|++.|+++..
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999877643 567899999999999999999999999999999875
Q ss_pred HHHHH----HHHHh-----ccCCc---c--c--cc--ccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Q 007053 521 EKDIE----RERRR-----SENPE---A--M--EE--DVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 521 ~~~~~----~~~~~-----~~~~~---~--~--~~--~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~ 581 (620)
..... ..... .+... . + .. ........|+.+||..|++.++|+++.+++..|++|.++|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 42100 00000 00000 0 0 00 000112469999999999999999999999999999999865
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.3e-40 Score=351.76 Aligned_cols=292 Identities=36% Similarity=0.665 Sum_probs=234.9
Q ss_pred ceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 284 ~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
.....|+++|++|+|++.+++.|++.+.+|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~ 119 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence 344668899999999999999999999999999999987 5678899999999999999999999999999999999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC-cceEEEEccCCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNR 442 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~-~~~viVIatTn~ 442 (620)
+.+.|.|+++..++.+|..++...|+||||||+|.+.+.+... ......+++++|+..|+++.. ..+++||+|||+
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 9999999999999999999999999999999999998776433 234678889999999998754 467999999999
Q ss_pred CCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 443 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 443 ~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
++.|+++++| ||+..+++++|+.++|.+||+.+++..+.. .+.++..||+.+.||+|+||.++|++|++.|+++...
T Consensus 197 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 197 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp GGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877643 5678999999999999999999999999999998643
Q ss_pred HHH-------HHHHH--hccCCcc-----cc--c--ccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Q 007053 522 KDI-------ERERR--RSENPEA-----ME--E--DVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 522 ~~~-------~~~~~--~~~~~~~-----~~--~--~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~ 581 (620)
... ..... ....... +. + ........|+.+||..|++.++||++++++..|++|.++|..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 100 00000 0000000 00 0 000112469999999999999999999999999999999864
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.5e-39 Score=354.86 Aligned_cols=292 Identities=33% Similarity=0.633 Sum_probs=235.9
Q ss_pred ceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-hhceeeecCc
Q 007053 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGP 362 (620)
Q Consensus 284 ~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-~~~~i~i~~~ 362 (620)
.....|+++|++|+|++.+++.|++.+.+|+.+++.|.. +..+++++|||||||||||+||+++|+++ +.+|+.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 445678999999999999999999999999999998875 45678999999999999999999999999 8999999999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC-cceEEEEccCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATN 441 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~-~~~viVIatTn 441 (620)
++.+.|.|+++..++.+|..++...|+||||||||.+.+.+... ......+++++|+..|+++.. ..+++||+|||
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 99999999999999999999999999999999999998766543 234678899999999998753 56899999999
Q ss_pred CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHH
Q 007053 442 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 442 ~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
+++.||++++| ||+..+++++|+.++|..||+.+++..+.. .+.++..||..|.||+|+||..+|++|++.|+++.+
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999877653 567899999999999999999999999999999875
Q ss_pred HHHHHHHHHhcc---------------CCcc-----cc--c--ccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 007053 521 EKDIERERRRSE---------------NPEA-----ME--E--DVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFA 576 (620)
Q Consensus 521 ~~~~~~~~~~~~---------------~~~~-----~~--~--~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k 576 (620)
............ .... +. . ........|+++||..|++.++||++++++..|++|.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~ 437 (444)
T 2zan_A 358 SATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFT 437 (444)
T ss_dssp HCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHT
T ss_pred hhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 320000000000 0000 00 0 0001124799999999999999999999999999998
Q ss_pred HHHhh
Q 007053 577 QTLQQ 581 (620)
Q Consensus 577 ~~l~~ 581 (620)
++|.+
T Consensus 438 ~~~~~ 442 (444)
T 2zan_A 438 EDFGQ 442 (444)
T ss_dssp SSCTT
T ss_pred HHHcC
Confidence 87754
No 19
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.3e-36 Score=353.23 Aligned_cols=295 Identities=35% Similarity=0.639 Sum_probs=258.6
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
..+.++|++|+|++.++++|++++.+|+.++++|..+++.++.++||+||||||||+||+++|.+++.+|+.++++++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCC
Q 007053 367 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 446 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~L 446 (620)
.+.++.+..++.+|+.+....|++|||||+|.+.+.++.. ......+++++|+..+++......+++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998766432 2335678899999999998888889999999999999
Q ss_pred cccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 447 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 526 (620)
Q Consensus 447 d~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~ 526 (620)
|+++++++||+..+.++.|+.++|.+||+.+++...+..+.++..++..+.||+++++..+|++|...++++........
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999999998899999999999999999999999999998887643210000
Q ss_pred HHHhccCCcccccccccchhhhhHHHHHHHHHHHhh-----------cCChHHHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 527 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR-----------SVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p-----------svs~~di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
... . .........++.+||..++....| .++|+++.+++++|+.+.+.+.| |++||+.
T Consensus 434 ~~~-------~-~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~--~~~~~~~ 502 (806)
T 1ypw_A 434 DET-------I-DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY--PVEHPDK 502 (806)
T ss_dssp HHH-------C-CHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTS--SSSSCTT
T ss_pred hhc-------c-chhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHh--hhhchHH
Confidence 000 0 000011335788899999988764 58999999999999999999999 9999986
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=8.2e-36 Score=327.76 Aligned_cols=249 Identities=40% Similarity=0.760 Sum_probs=221.0
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 367 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~ 367 (620)
.+.++|+||+|++++++++++.+.+ +..++.|..+|...++++||+||||||||+||+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4678999999999999999999876 678899999999999999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 368 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
++|.....++.+|..|+...||||||||+|.+...++...+.......+++++|+..|+++....+++||++||+++.||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99988889999999999999999999999999877654322223455678999999999887777899999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 527 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~ 527 (620)
++++|||||++.+.+++|+.++|.+||+.+++..++..++++..+|..+.||+|+||.++|++|+..|.++.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~-------- 240 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG-------- 240 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999998889999999999999999999999999998887542
Q ss_pred HHhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 528 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
...|+.+||..|+.++.+
T Consensus 241 -----------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 -----------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -----------------CSSBCHHHHHHHHHHHC-
T ss_pred -----------------CCeecHHHHHHHHHHHhc
Confidence 235899999999998754
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-35 Score=304.88 Aligned_cols=269 Identities=45% Similarity=0.763 Sum_probs=229.7
Q ss_pred eeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 286 ~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
...|+++|++++|++.++++|++++..++.+++.+.++|..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC
Q 007053 366 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 445 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~ 445 (620)
..+.+..+..++.+|..+....|+||||||+|.+.+.+............+.+..++..+++.....+++||+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999776543222233445677888888888777778999999999999
Q ss_pred CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 007053 446 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 525 (620)
Q Consensus 446 Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~ 525 (620)
+++++++++||+..+.+++|+.++|.+||+.+++...+..+.++..++..+.|++++||..+|++|...|+++.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------ 242 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------ 242 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999998888888999999999999999999999999999988753
Q ss_pred HHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhc--CChHHHHHHHHHHHHH
Q 007053 526 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS--VSDADIRKYQAFAQTL 579 (620)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ps--vs~~di~~~e~~k~~l 579 (620)
...|+.+||.+|++.+.++ .+...-..|..|...+
T Consensus 243 -------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
T 3h4m_A 243 -------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLE 279 (285)
T ss_dssp -------------------CSSBCHHHHHHHHHHHHHHHCCC--------------
T ss_pred -------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHh
Confidence 2359999999999988643 3334445555554443
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=5.4e-35 Score=296.74 Aligned_cols=250 Identities=40% Similarity=0.769 Sum_probs=218.5
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
..+..+|++|+|++.+++++++.+.+ +.+++.|..++...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34678999999999999999998876 77888888889999999999999999999999999999999999999999988
Q ss_pred eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCC
Q 007053 367 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 446 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~L 446 (620)
.+.+..+..++.+|+.+....|+++||||+|.+...++...........+.+++++..+++.....+++||+|||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 88898888999999999988899999999999987665432222234457889999999988777889999999999999
Q ss_pred cccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 447 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 526 (620)
Q Consensus 447 d~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~ 526 (620)
+++++|++||+..+++++|+.++|.+|++.+++..++..+.++..++..+.||+++||.++|++|...|.++.
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------- 236 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN------- 236 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999998888888999999999999999999999999998887643
Q ss_pred HHHhccCCcccccccccchhhhhHHHHHHHHHHHhh
Q 007053 527 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~p 562 (620)
...|+.+||..|++.+..
T Consensus 237 ------------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 ------------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ------------------CSSBCHHHHHHHHHHHTT
T ss_pred ------------------CCcccHHHHHHHHHHHhc
Confidence 236999999999998753
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=315.87 Aligned_cols=278 Identities=37% Similarity=0.672 Sum_probs=233.3
Q ss_pred ceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 284 ~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
.....++++|++|+|++.+++.|++.+.+|+.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 44456789999999999999999999999999999887664 56889999999999999999999999999999999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC--cceEEEEccCC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATN 441 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~--~~~viVIatTn 441 (620)
+.+.|.|..+..++.+|..+....|+||||||+|.|.+.++.. ......+++++|+..+++... ..+++||+|||
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998765432 234667889999999987653 45799999999
Q ss_pred CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHH
Q 007053 442 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 442 ~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
+++.+++++++ ||+..+++++|+.++|.+|++.+++..... .+.++..+++.+.||+++||..||++|+..++++..
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 999999999999999999999998765432 345688999999999999999999999999988642
Q ss_pred HHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Q 007053 521 EKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 580 (620)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~ 580 (620)
...... ........|+.+||..|++.++|+++.+++..|++|.++|.
T Consensus 308 ~~~~~~-------------~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g 354 (357)
T 3d8b_A 308 TADIAT-------------ITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354 (357)
T ss_dssp C-----------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHS
T ss_pred hhhhcc-------------ccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 111000 00122346999999999999999999999999999999875
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2e-35 Score=305.89 Aligned_cols=279 Identities=36% Similarity=0.627 Sum_probs=229.6
Q ss_pred ceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 284 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 284 ~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
.....++++|++++|++.+++.|++.+.+++.+++.|..++ .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 34456889999999999999999999999999999887665 46789999999999999999999999999999999999
Q ss_pred eeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCc---ceEEEEccC
Q 007053 364 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK---KTVFIIGAT 440 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~---~~viVIatT 440 (620)
+.+.+.+..+..++.+|..+....|++|||||+|.+...++... .....++.+.|+..+++.... .+++||++|
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~t 166 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT 166 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEE
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeec
Confidence 99999999888999999999999999999999999987654321 234567888899988876543 569999999
Q ss_pred CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHH
Q 007053 441 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIREN 519 (620)
Q Consensus 441 n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~ 519 (620)
|+++.+++++++ ||+..+++++|+.++|..||+.+++..... .+..+..++..+.||+++||..+|++|+..++++.
T Consensus 167 n~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 167 NRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp SCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred CChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999999999999999999998765432 34568899999999999999999999999999875
Q ss_pred HHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Q 007053 520 IEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 520 i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~ 581 (620)
....... ........|+.+||..|++.++|+++.+++..|++|.+.+..
T Consensus 245 ~~~~~~~-------------~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 245 NVEQVKC-------------LDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp C---------------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred hhhhccc-------------ccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 2211000 001123469999999999999999999999999999988865
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=5.6e-34 Score=314.87 Aligned_cols=275 Identities=40% Similarity=0.718 Sum_probs=235.1
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 368 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~ 368 (620)
+.++|+||+|+++++.++++.+.+ +..+..|..++...++++||+||||||||+||+++|.+++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 789999999999999999998876 6778889999999999999999999999999999999999999999999998888
Q ss_pred ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcc
Q 007053 369 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 448 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~ 448 (620)
.+.....++.+|+.++...||++||||||.+...++...........+.+++++..|++......++++++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888889999999988889999999999998665432111223446788999999999887778999999999999999
Q ss_pred cccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 449 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 528 (620)
Q Consensus 449 al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~ 528 (620)
+++|||||++.++|++|+.++|.+||+.+++..++..++++..+|..+.||+|+||.++|++|+..|.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999998888889999999999999999999999999998876542
Q ss_pred HhccCCcccccccccchhhhhHHHHHHHHHHHhhcC-------ChH--HHHHHHHHHHHHhhhcCCCCccccCCC
Q 007053 529 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSV-------SDA--DIRKYQAFAQTLQQSRGFGSEFRFPDA 594 (620)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psv-------s~~--di~~~e~~k~~l~~~~~~~~p~k~pe~ 594 (620)
...|+.+||..|+.++.+.. +.+ .+..|++.-+.+ +.| .+.|++.
T Consensus 256 ----------------~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av---~~~--~l~~~~~ 309 (499)
T 2dhr_A 256 ----------------RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHAL---AAH--FLEHADG 309 (499)
T ss_dssp ----------------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHH---HHC--CSSSCCC
T ss_pred ----------------CCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHH---HHh--hcCCCCe
Confidence 23589999999999886532 222 344455555444 456 7777664
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=291.35 Aligned_cols=249 Identities=39% Similarity=0.732 Sum_probs=199.0
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 368 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~ 368 (620)
|+++|++++|++.+++.|++++.+ +.+++.|..+|..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568999999999999999999886 7888889999999999999999999999999999999999999999999998888
Q ss_pred ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCC-CCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 369 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~-~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
.+.....++.+|..+....|+||||||+|.+...+...... ........+..++..+++.....+++||+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88888889999999998889999999999998765432110 11234567888999998877777899999999999999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcC--hHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD--LRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 525 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~--l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~ 525 (620)
++++++|||+..+++++|+.++|.+||+.+++...+..+.+ +..++..+.||+++||..+|++|+..|.++.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------ 233 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------ 233 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999998877654443 4789999999999999999999998887653
Q ss_pred HHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhc
Q 007053 526 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 563 (620)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ps 563 (620)
...|+.+||..|++++.++
T Consensus 234 -------------------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 234 -------------------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ----------------------CCBCCHHHHHHHHHHH
T ss_pred -------------------CCCCCHHHHHHHHHHhccC
Confidence 2258999999999988765
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=305.88 Aligned_cols=281 Identities=36% Similarity=0.615 Sum_probs=226.9
Q ss_pred ccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 282 RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 282 r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
++.....+.++|++|+|++.+++.|.+++.+++.+++.|..++ .+++++|||||||||||++|+++|++++.+|+.++|
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 4455566889999999999999999999999999999888776 457899999999999999999999999999999999
Q ss_pred cceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC--cceEEEEcc
Q 007053 362 PELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGA 439 (620)
Q Consensus 362 ~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~--~~~viVIat 439 (620)
+++.+.|.|..+..++.+|..++...|+||||||||.|...+... ......++++.|+..+++... ..+++||+|
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 999999999999999999999999999999999999998765432 233567888999999987654 457999999
Q ss_pred CCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q 007053 440 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRE 518 (620)
Q Consensus 440 Tn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~ 518 (620)
||+++.|++++++ ||+..++++.|+.++|.+||+.++...... .+.++..|+..+.||++++|..||+.|+..++++
T Consensus 259 tn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 259 TNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336 (389)
T ss_dssp ESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred cCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999999988664332 3446889999999999999999999999999887
Q ss_pred HHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Q 007053 519 NIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 581 (620)
Q Consensus 519 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~e~~k~~l~~ 581 (620)
..... ...........|+.+||..+++.++|+++.+++..|++|.++|.+
T Consensus 337 l~~~~-------------~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 337 LKPEQ-------------VKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp SCCC----------------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhhhh-------------hhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 41110 000011223468999999999999999999999999999988754
No 28
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=6.1e-33 Score=281.13 Aligned_cols=247 Identities=43% Similarity=0.791 Sum_probs=211.6
Q ss_pred eeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 285 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 285 ~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
..+.|.++|++++|++.++.++++.... +..+..+..++...+++++|+||||||||+|+++++..++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4456889999999999999999988775 567788888999999999999999999999999999999999999998888
Q ss_pred eeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 365 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 365 ~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
...+.+.....+..+|+.+....|+++|+||+|.+...+............+.+++++..|++......++++++||+|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 77777777778899999998788999999999999866543111122345677899999999887777899999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.||++++|++||+..++++.|+.++|.+||+.+++..++..++++..+|..+.||+++||.++|++|...|.++.
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~----- 240 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG----- 240 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999988888889999999999999999999999999998887542
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHH
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESM 557 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al 557 (620)
...|+.+||++|+
T Consensus 241 --------------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 --------------------RRKITMKDLEEAA 253 (254)
T ss_dssp --------------------CSSBCHHHHHHHT
T ss_pred --------------------CCCcCHHHHHHHh
Confidence 2258999999886
No 29
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=3.9e-34 Score=291.80 Aligned_cols=253 Identities=38% Similarity=0.716 Sum_probs=215.9
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
+.|.++|++++|++.+++.|++.+.+ +.+++.|..++...++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678999999999999999998876 78899999999999999999999999999999999999999999999999988
Q ss_pred eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCC-CCCCCchhHHHHHHhhhhcCCCCc-ceEEEEccCCCCC
Q 007053 367 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV-GDAGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPD 444 (620)
Q Consensus 367 ~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~-~~~~~~~~rvl~~LL~~ld~~~~~-~~viVIatTn~~~ 444 (620)
.+.+.....++.+|..+....|+||||||+|.+...+.... ........+++++|+..+++.... ..++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88888888899999999988899999999999986652210 011122344677888888876543 4589999999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 524 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~ 524 (620)
.++++++|+|||+..+++++|+.++|.++|+.+++..++..+.++..++..+.||+|+||.++|++|...|.++.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~----- 237 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN----- 237 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-----
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999998888888899999999999999999999999987775431
Q ss_pred HHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCC
Q 007053 525 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS 565 (620)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs 565 (620)
...|+.+||..|++.+.|+..
T Consensus 238 --------------------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 238 --------------------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp --------------------CCSCCHHHHHTSCTTCCCCCC
T ss_pred --------------------cCCcCHHHHHHHHHHHhhcch
Confidence 235899999999988877654
No 30
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.97 E-value=1.7e-31 Score=257.52 Aligned_cols=160 Identities=24% Similarity=0.327 Sum_probs=145.5
Q ss_pred CeeEeccccCC--CCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecC--CCCCCCceeeeHhhhcccccccCCe
Q 007053 29 NRLVVDEAIND--DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALAD--DTCEEPKIRMNKVVRSNLRVRLGDV 104 (620)
Q Consensus 29 ~~~~v~~~~~~--~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~--~~~~~~~i~~~~~~r~n~~~~~gd~ 104 (620)
-+|+|++|.++ |||+|||||+.|++||+++||+|+|+|+| .++|++|+. ++++.++||||+.+|+|+|+++||+
T Consensus 7 i~L~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G~r--~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~ 84 (185)
T 1cz4_A 7 IILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVR--KTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDK 84 (185)
T ss_dssp EEEEEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEESSS--EEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCE
T ss_pred EEEEEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEcCC--eEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCE
Confidence 47999999875 89999999999999999999999999998 588999986 6899999999999999999999999
Q ss_pred EEEeecCCCCCcceEEeeccC---CcccccccchhhhhhhhhhhhhccccccCCeEEEec---Cce-eEEEEEEEeCCCC
Q 007053 105 VSVHQCADVKYGKRVHILPVD---DTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRG---GMR-SVEFKVIETDPPE 177 (620)
Q Consensus 105 v~v~~~~~~~~a~~v~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~---~~~-~~~~~v~~~~p~~ 177 (620)
|+|++ .++++|++|+|+|.. +++. +.+. +..||+++|. ++||.+||.|.+.. .++ .+.|+|++|+|++
T Consensus 85 V~V~~-~~~~~A~~V~l~P~~~~~~~~~-~~~~-~~~~l~~~l~--~rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~ 159 (185)
T 1cz4_A 85 VKVRK-VRTEIAKKVTLAPIIRKDQRLK-FGEG-IEEYVQRALI--RRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSK 159 (185)
T ss_dssp EEEEE-ECCCBCSEEEEEEECSTTCCSC-CCSS-HHHHHHHHHT--TCEECTTCEECCSSCCCSSCCCCEEEEEEESSSS
T ss_pred EEEEE-CCCCCccEEEEecccccccccc-cccc-hHHHHHHHHC--CCcccCCCEEEEeeeccCCCeEEEEEEEEEcCCC
Confidence 99999 689999999999996 6554 4333 4799999997 58999999999975 678 9999999999999
Q ss_pred -ceeecCCceEeeCCCccc
Q 007053 178 -YCVVAPDTEIFCEGEPVR 195 (620)
Q Consensus 178 -~~~~~~~t~~~~~~~~~~ 195 (620)
+|+|+++|+|.+.++|++
T Consensus 160 ~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 160 VPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp SCEECCTTCEEEECSCCST
T ss_pred ceEEEcCCeEEEECCccch
Confidence 999999999999988875
No 31
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=2.1e-31 Score=273.77 Aligned_cols=246 Identities=43% Similarity=0.791 Sum_probs=210.0
Q ss_pred eeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 286 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 286 ~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.+.|.++|++++|++.+++++++.... +..+..+..++...+++++|+||||||||+|+++++..++..++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 344889999999999999999988775 5667888888988899999999999999999999999999999999988877
Q ss_pred eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCC
Q 007053 366 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 445 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~ 445 (620)
..+.+.....+..+|+.+....|+++|+||+|.+...+............+.+++++..|++......++++++||+|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 77777777778899999987889999999999997654321111122446778899999998877778999999999999
Q ss_pred CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 007053 446 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 525 (620)
Q Consensus 446 Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~ 525 (620)
||++++|++||+..+++++|+.++|.+||+.+++..++..++++..+|..+.||+++||.++|++|...|.++.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------ 264 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------ 264 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999988888888999999999999999999999999998876532
Q ss_pred HHHHhccCCcccccccccchhhhhHHHHHHHH
Q 007053 526 RERRRSENPEAMEEDVEDEVAEIKAVHFEESM 557 (620)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al 557 (620)
...|+.+||++|+
T Consensus 265 -------------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 -------------------RRKITMKDLEEAA 277 (278)
T ss_dssp -------------------CCSBCHHHHHHHT
T ss_pred -------------------CCCcCHHHHHHHh
Confidence 2258999999886
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=1.2e-26 Score=240.62 Aligned_cols=177 Identities=23% Similarity=0.337 Sum_probs=140.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhh----hccCCeeeeeccchhH
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSI 399 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A----~~~~p~IL~iDEiD~l 399 (620)
+..+|+++|||||||||||+||+++|++++.+|+.++++++.+.|.|.++..++++|..| +...||||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999998 5778999999999999
Q ss_pred HhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChh
Q 007053 400 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEE 468 (620)
Q Consensus 400 ~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~ 468 (620)
.+.++.. ........++.+.|+..||+.. ...+++||+|||+++.||++++|+|||+..++ .|+.+
T Consensus 112 ~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 112 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred cCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 8754432 1222345577799999987443 44579999999999999999999999998886 57999
Q ss_pred HHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHH
Q 007053 469 SRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEI 507 (620)
Q Consensus 469 eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l 507 (620)
+|.+|++.++.. .++++..+++.+.||++++|..+
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHH
Confidence 999999988753 35679999999999999999743
No 33
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.92 E-value=1.7e-25 Score=214.56 Aligned_cols=159 Identities=15% Similarity=0.247 Sum_probs=135.3
Q ss_pred CeeEeccccCCCCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecC--C--CCCCCceeeeHhhhcccccccCCe
Q 007053 29 NRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALAD--D--TCEEPKIRMNKVVRSNLRVRLGDV 104 (620)
Q Consensus 29 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~--~--~~~~~~i~~~~~~r~n~~~~~gd~ 104 (620)
..+.|.= .+..+|+|||+++.|.+||+.+||+|+|+|++ ++++++|+. + |++.++|+||+.+|+|+|+++||+
T Consensus 13 ~~~~v~~-~~~~~~~vrL~~~~~~~L~~~~gd~VeI~g~~--~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~ 89 (179)
T 1wlf_A 13 AVVTVAF-TNARDCFLHLPRRLVAQLHLLQNQAIEVASDH--QPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQ 89 (179)
T ss_dssp EEEEEEE-ECCSSSCEEECHHHHHHTTCCTTCCEEEESSS--CCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCE
T ss_pred EEEEEEE-ECCCCcEEECCHHHHHHcCCCCCcEEEEEeCC--eeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCE
Confidence 3455541 12378999999999999999999999999988 588899976 3 678999999999999999999999
Q ss_pred EEEeecCCCCCcceEEeeccCC-cccccccchhhhhhhhhhhhhccccccCCeEEEecCc-eeEEEEEEEeCC-CCceee
Q 007053 105 VSVHQCADVKYGKRVHILPVDD-TIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETDP-PEYCVV 181 (620)
Q Consensus 105 v~v~~~~~~~~a~~v~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~-~~~~~~v~~~~p-~~~~~~ 181 (620)
|+|+++.++++|++|+|+|.+. +|+ +. +.+..||+++|.++.|||.+||.|.++..+ ..+.|+|++|.| .++|+|
T Consensus 90 V~V~~~~~~~~A~~V~laP~~~dD~e-i~-e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~I 167 (179)
T 1wlf_A 90 VFLRPCSHVVSCQQVEVEPLSADDWE-IL-ELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRL 167 (179)
T ss_dssp EEEEECSCCEECSEEEEEESSHHHHH-HH-HHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEEC
T ss_pred EEEEECCCCccceEEEEEcCCcCCeE-Ee-hhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEE
Confidence 9999978999999999999953 265 21 345789999999888999999999998766 789999999999 999999
Q ss_pred cCCceEeeCCC
Q 007053 182 APDTEIFCEGE 192 (620)
Q Consensus 182 ~~~t~~~~~~~ 192 (620)
+++|+|.+.++
T Consensus 168 t~~TeI~v~pk 178 (179)
T 1wlf_A 168 ETNTKLLIQPK 178 (179)
T ss_dssp CTTCEEEECC-
T ss_pred CCCcEEEEecC
Confidence 99999999754
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=3.1e-25 Score=243.89 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=146.8
Q ss_pred ccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh--hceeeecCccee
Q 007053 288 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELL 365 (620)
Q Consensus 288 ~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~l~ 365 (620)
.|...|++++|++.+++.+.+++.+. ..+..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35677999999999999988877531 23556788999999999999999999999998 899999999999
Q ss_pred eeeccccccchHHHHHhh---hccCCeeeeeccchhHHhhcCCCCCC-CCCchh---------------HHHHHHhhhhc
Q 007053 366 TMWFGESEANVREIFDKA---RQSAPCVLFFDELDSIATQRGSSVGD-AGGAAD---------------RVLNQLLTEMD 426 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A---~~~~p~IL~iDEiD~l~~~r~~~~~~-~~~~~~---------------rvl~~LL~~ld 426 (620)
++|.|+++. +++.|..| +...||||||||+|.+++.+...... ...... ++.+.++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 99999999 78889999999999999877543111 000111 22233444443
Q ss_pred --CCCCcceEEEEccCCCCCCCcccccCCCCCCc--eeeeeCCC--hhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCC
Q 007053 427 --GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ--LIYIPLPD--EESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 500 (620)
Q Consensus 427 --~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~--~i~~~~P~--~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~s 500 (620)
+......++|++|||+++.+|++++|||||+. .++++.|+ .++|.+|++.+.. .+++.++..+.|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 34445567777999999999999999999998 66777774 5889999887663 268899999999
Q ss_pred CCcHHHHHHH
Q 007053 501 GADITEICQR 510 (620)
Q Consensus 501 g~DL~~l~~~ 510 (620)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=2.5e-21 Score=200.77 Aligned_cols=216 Identities=21% Similarity=0.278 Sum_probs=166.6
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCC---CceeeeecCCCChhHHHHHHHHhhhhh-------ceeeecCc
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGP 362 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~LAralA~~l~~-------~~i~i~~~ 362 (620)
+.+++|++.+++.|.+++.++. .+..+..+|+.+ +.++||+||||||||++|+++|+.++. +++.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4579999999999999988754 356666666554 446999999999999999999998854 89999999
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
++.+.++|.....+..+|..+ .++||||||+|.+...++. ......+++.|+..|+.. ..++++|++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 999999998888888888887 3579999999999754322 124567888888888754 345678888876
Q ss_pred CC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc-ChHHHHhhc-------CCCCCCcHHHHHH
Q 007053 443 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYT-------QGFSGADITEICQ 509 (620)
Q Consensus 443 ~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv-~l~~LA~~t-------~G~sg~DL~~l~~ 509 (620)
.. .++|++++ ||+..++|++|+.+++.+|++.+++...+.-+. .+..++... ..-+++++.++++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 53 25789988 999999999999999999999999765543222 244555542 2223688999999
Q ss_pred HHHHHHHHHHHH
Q 007053 510 RACKYAIRENIE 521 (620)
Q Consensus 510 ~A~~~A~~~~i~ 521 (620)
+|...+..+.+.
T Consensus 257 ~a~~~~~~r~~~ 268 (309)
T 3syl_A 257 RARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 998887777643
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=2.3e-20 Score=209.22 Aligned_cols=234 Identities=21% Similarity=0.291 Sum_probs=155.6
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 366 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~ 366 (620)
.....-+++++|++++++.+.+.+....... .. ++..+||+||||||||+||+++|..++.++..+++..+..
T Consensus 74 ~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~ 146 (543)
T 3m6a_A 74 EAGRLLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRD 146 (543)
T ss_dssp TGGGTHHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccch
Confidence 3455667889999999999987665321111 11 4678999999999999999999999999999998876543
Q ss_pred ---------eeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC-------
Q 007053 367 ---------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA------- 430 (620)
Q Consensus 367 ---------~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~------- 430 (620)
.|+|.....+...|..+....| ||||||+|.+...++. ...+.|+..|+....
T Consensus 147 ~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~----------~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 147 ESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG----------DPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp -----------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSS
T ss_pred hhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc----------CHHHHHHHHHhhhhcceeeccc
Confidence 5677777888889998877766 9999999999765321 134556776654321
Q ss_pred ------cceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhc-----cCCCC---C---CcChHHHH
Q 007053 431 ------KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-----KSPVS---K---DVDLRALA 493 (620)
Q Consensus 431 ------~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~-----~~~l~---~---dv~l~~LA 493 (620)
..++++|+|||+++.++++|++ ||+ +|+|+.|+.+++.+|++.++. ...+. - +..+..++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~ 292 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDII 292 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHH
T ss_pred CCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHH
Confidence 1568999999999999999998 995 799999999999999999872 22221 1 11244555
Q ss_pred hhcCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 494 KYTQG-FSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 494 ~~t~G-~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
....+ ...++|++.++.++..+..+.+.. ......|+.+|+.+++...
T Consensus 293 ~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~-------------------~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 293 RYYTREAGVRSLERQLAAICRKAAKAIVAE-------------------ERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHCCCSSSHHHHHHHHHHHHHHHHHHHTT-------------------CCSCCEECTTTTHHHHCSC
T ss_pred HhCChhhchhHHHHHHHHHHHHHHHHHHhc-------------------CCcceecCHHHHHHHhCCc
Confidence 43332 445677777776666555443221 0123458888888887643
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.79 E-value=1.3e-19 Score=192.32 Aligned_cols=220 Identities=21% Similarity=0.276 Sum_probs=156.0
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCcceee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT 366 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~~ 366 (620)
|...|+++.|.+..++.+..+.... ..+..+++++||+||||||||++|+++|+.++. +|+.+++..+.+
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 5556999999999988866554321 113445689999999999999999999999875 677777665433
Q ss_pred eec-------------------------------------------------cccccchHHHHHhhhc---------cCC
Q 007053 367 MWF-------------------------------------------------GESEANVREIFDKARQ---------SAP 388 (620)
Q Consensus 367 ~~~-------------------------------------------------g~se~~i~~if~~A~~---------~~p 388 (620)
.+. +.....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 222 2223445555544432 126
Q ss_pred eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC-----------CCCCCCcccccCCCCCC
Q 007053 389 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-----------NRPDIIDPALLRPGRLD 457 (620)
Q Consensus 389 ~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT-----------n~~~~Ld~al~rpgRf~ 457 (620)
+||||||+|.+.. ..++.|+..++.... .++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~~--------------~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLDI--------------ESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSBH--------------HHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccCh--------------HHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 8999999998752 345666666654322 34444443 357789999998 997
Q ss_pred ceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 007053 458 QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEA 536 (620)
Q Consensus 458 ~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~ 536 (620)
. +.|++|+.+++.+|++.++...... .+..+..+++.+.+.+++++.++|++|...|..+.
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~----------------- 314 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK----------------- 314 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----------------
Confidence 5 8999999999999999988654332 22347788888886788999999999988876542
Q ss_pred cccccccchhhhhHHHHHHHHHHH
Q 007053 537 MEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 537 ~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...|+.+|+..|+..+
T Consensus 315 --------~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 315 --------GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp --------CSSBCHHHHHHHHHHS
T ss_pred --------CCCCCHHHHHHHHHHh
Confidence 2369999999999863
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=3.6e-20 Score=201.02 Aligned_cols=170 Identities=20% Similarity=0.260 Sum_probs=84.3
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCC-CCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee-eecc
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG 370 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~-~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~-~~~g 370 (620)
.++|+|++.+++.|...+..++.++..+..++.. +++++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 3578999999999999998776666555544432 5689999999999999999999999999999999999887 5888
Q ss_pred c-cccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEcc-CCCCCCCcc
Q 007053 371 E-SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-TNRPDIIDP 448 (620)
Q Consensus 371 ~-se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIat-Tn~~~~Ld~ 448 (620)
. .+..++.+|..+... +++||++.+.... .....++++++|+..||++.....+ +++ ||+++.||+
T Consensus 94 ~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 94 KEVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CCTHHHHHHHHHHHHHH----HHHHHHHSCC-------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 5 788899999988754 5688887764321 2346689999999999998765554 444 999999999
Q ss_pred cccCCCCCCceeeeeCCChh-HHHHHH
Q 007053 449 ALLRPGRLDQLIYIPLPDEE-SRLQIF 474 (620)
Q Consensus 449 al~rpgRf~~~i~~~~P~~~-eR~~Il 474 (620)
+|+||||||+.|++++|+.. .|.+||
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999988 777776
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.76 E-value=1.8e-18 Score=176.61 Aligned_cols=192 Identities=24% Similarity=0.335 Sum_probs=131.9
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccc
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 373 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se 373 (620)
..+.|.....+.+....... .+.+...+..++.++||+||||||||++|+++|+.++.+|+.+++++. +.|...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCch
Confidence 34556655555554421110 122333345677899999999999999999999999999999988763 333332
Q ss_pred ----cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC-cceEEEEccCCCCCCCcc
Q 007053 374 ----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDP 448 (620)
Q Consensus 374 ----~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~-~~~viVIatTn~~~~Ld~ 448 (620)
..++.+|..+....+++|||||+|.+++.+... ......+++.|...+++... ...++||+|||.++.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 467888988887788999999999997654322 12345677777777776543 457889999999988888
Q ss_pred -cccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCC
Q 007053 449 -ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFS 500 (620)
Q Consensus 449 -al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~s 500 (620)
.+.+ ||...+.+|+++. |.+|.+.+.+...+ .+..+..+++.+.|++
T Consensus 183 ~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKK 230 (272)
T ss_dssp TTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSE
T ss_pred hhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCC
Confidence 5554 9987777765554 44444444333333 3445788899888874
No 40
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=3.1e-19 Score=184.38 Aligned_cols=244 Identities=19% Similarity=0.288 Sum_probs=161.7
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhc-CCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceee-eeccc
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 371 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~-g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~-~~~g~ 371 (620)
+++.|.+.+++.+...+..++........+ ....+.++||+||||||||++|+++|+.++.+++.++++++.. .|++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 468999999999988876533222111111 1134678999999999999999999999999999999988765 45554
Q ss_pred c-ccchHHHHHhhh-----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------CcceEEEE
Q 007053 372 S-EANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFII 437 (620)
Q Consensus 372 s-e~~i~~if~~A~-----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~~~~viVI 437 (620)
. ...++.++..+. ...++||||||+|.+....... ........+.+.|+..|++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 344666666431 1236799999999997654221 111112234677888777542 22357777
Q ss_pred cc----CCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhh-----------ccCCC---CCCcChHHHHhhcC--
Q 007053 438 GA----TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL-----------RKSPV---SKDVDLRALAKYTQ-- 497 (620)
Q Consensus 438 at----Tn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l-----------~~~~l---~~dv~l~~LA~~t~-- 497 (620)
++ ++.+..+++++++ ||+..+.|++|+.+++.+|++... ..... -.+..+..|++.+.
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 77 5677889999987 999889999999999999998422 11111 11223566666652
Q ss_pred -----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHH
Q 007053 498 -----GFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 498 -----G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
+.+.+++.++|+++...+..+... .......|+.+|+.++++..
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASD-------------------MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGG-------------------CTTCEEEECHHHHHHHTCSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCcc-------------------ccCCEEEEeeHHHHHHHHhh
Confidence 456788888888776554422200 00112358999999988755
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.75 E-value=3.6e-18 Score=179.45 Aligned_cols=195 Identities=21% Similarity=0.298 Sum_probs=143.8
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 368 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~ 368 (620)
.+.+|+++.|.+..++.+..++..... .-.++.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 344899999999999999988875321 123456899999999999999999999999999999987652
Q ss_pred ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC----------------Ccc
Q 007053 369 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKK 432 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----------------~~~ 432 (620)
....+...+.. ...+++|||||||.+.. .....|+..++... ...
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 22334444443 23568999999998753 23444555554321 011
Q ss_pred eEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHH
Q 007053 433 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 511 (620)
Q Consensus 433 ~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A 511 (620)
++++|++||+...+++++++ ||+..+.|++|+.+++..+++.++...... .+..+..++..+.| +.+++.++++++
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRV 230 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 48899999999999999998 999999999999999999999988765533 22235667775544 457777888777
Q ss_pred HHHHH
Q 007053 512 CKYAI 516 (620)
Q Consensus 512 ~~~A~ 516 (620)
...+.
T Consensus 231 ~~~a~ 235 (338)
T 3pfi_A 231 RDFAD 235 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=2.5e-18 Score=183.01 Aligned_cols=223 Identities=21% Similarity=0.323 Sum_probs=149.9
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhh-cC-CCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeee-eccc
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEK-FG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGE 371 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~-~g-~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~-~~g~ 371 (620)
.|.|++.+++.+...+............ .+ ..++.++||+||||||||++|+++|+.++.+|+.++|+++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3789999999998888532211110000 01 1256789999999999999999999999999999999988743 7776
Q ss_pred c-ccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceEE
Q 007053 372 S-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 435 (620)
Q Consensus 372 s-e~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~vi 435 (620)
. ...++.+|..+ ....++||||||+|.+.+.+............++++.|+..|++.. ....++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777776 3345789999999999876544322211223348899999998431 011234
Q ss_pred EEccCCC--------C----------CC-----------------------------------CcccccCCCCCCceeee
Q 007053 436 IIGATNR--------P----------DI-----------------------------------IDPALLRPGRLDQLIYI 462 (620)
Q Consensus 436 VIatTn~--------~----------~~-----------------------------------Ld~al~rpgRf~~~i~~ 462 (620)
+|+|||. . .. +.|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 5555554 1 11 5677776 99999999
Q ss_pred eCCChhHHHHHHHH----hhcc-------CCCC---CCcChHHHHhh--cCCCCCCcHHHHHHHHHHHHHHHH
Q 007053 463 PLPDEESRLQIFKA----CLRK-------SPVS---KDVDLRALAKY--TQGFSGADITEICQRACKYAIREN 519 (620)
Q Consensus 463 ~~P~~~eR~~Il~~----~l~~-------~~l~---~dv~l~~LA~~--t~G~sg~DL~~l~~~A~~~A~~~~ 519 (620)
++|+.+++.+|++. +++. .... .+.-++.|++. ...+..++|+++++++...++.+.
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 99999999999986 2211 1111 12225566653 345667999999999888777553
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.72 E-value=3.8e-17 Score=173.43 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=140.4
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---------hhceeeecC
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKG 361 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---------~~~~i~i~~ 361 (620)
..++++.|.+..++.+..++...+. ...+.+++|+||||||||++++++++.+ +..++.++|
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3447899999999999988765322 1346789999999999999999999988 778899998
Q ss_pred cceeeee----------------ccccccc-hHHHHHhhhc-cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhh
Q 007053 362 PELLTMW----------------FGESEAN-VREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 423 (620)
Q Consensus 362 ~~l~~~~----------------~g~se~~-i~~if~~A~~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~ 423 (620)
....+.+ .+.+... +..++..... ..|++|||||+|.+...+ ....++..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 7543211 1111222 3344444433 347899999999997431 12356677777
Q ss_pred hhcCCCCcceEEEEccCCCC---CCCcccccCCCCCCc-eeeeeCCChhHHHHHHHHhhcc----CCCCCCcChHHHHhh
Q 007053 424 EMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEESRLQIFKACLRK----SPVSKDVDLRALAKY 495 (620)
Q Consensus 424 ~ld~~~~~~~viVIatTn~~---~~Ld~al~rpgRf~~-~i~~~~P~~~eR~~Il~~~l~~----~~l~~dv~l~~LA~~ 495 (620)
.+.......++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.+++.+|++.++.. ..+. +..+..+++.
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHH
Confidence 66544324567888888877 678888887 8875 8999999999999999988754 2222 2336677777
Q ss_pred cC---CCCCCcHHHHHHHHHHHHH
Q 007053 496 TQ---GFSGADITEICQRACKYAI 516 (620)
Q Consensus 496 t~---G~sg~DL~~l~~~A~~~A~ 516 (620)
+. | .++.+.++|+.|...|.
T Consensus 235 ~~~~~G-~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 235 AAREHG-DARRALDLLRVAGEIAE 257 (387)
T ss_dssp HHSSSC-CHHHHHHHHHHHHHHHH
T ss_pred HHHhcc-CHHHHHHHHHHHHHHHH
Confidence 76 4 24556677777766554
No 44
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.71 E-value=8.6e-19 Score=214.71 Aligned_cols=209 Identities=17% Similarity=0.227 Sum_probs=143.4
Q ss_pred hccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeeccccccccc
Q 007053 217 AKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDI 296 (620)
Q Consensus 217 A~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di 296 (620)
+..+++|.|++|.. ++++++++|++. +.+ .+.+...+++.+ |..+ ..+.|+..++ +.++|+++
T Consensus 960 ~g~w~~~~g~~l~~-~~e~a~~~L~~~-~~~---~~ei~~~i~~~~------~~~~-~~~~~~~~~~-----~~~~~~~~ 1022 (1706)
T 3cmw_A 960 AGAWYSYKGEKIGQ-GKANATAWLKDN-PET---AKEIEKKVRELL------LSNP-NSTTGSTGSA-----SGSSTGSM 1022 (1706)
T ss_dssp ETTEEEETTEEEEE-SHHHHHHHHHHC-HHH---HHHHHHHHHHHH------CSSC-CC---------------------
T ss_pred cCceeeecccchhh-hHHHHHHHHHhC-chH---HHHHHHHHHHHH------hhhc-cCCCcccccc-----CCceeeec
Confidence 34456788999975 999999999984 322 133444444443 3333 4455554433 44899999
Q ss_pred cchHHHHHHHHHhhcCcCCC----------hhhhhh------cCCC----------CCce--eeeecCCCChhHHHHHHH
Q 007053 297 GGLENVKRELQETVQYPVEH----------PEKFEK------FGMS----------PSKG--VLFYGPPGCGKTLLAKAI 348 (620)
Q Consensus 297 ~Gl~~~k~~L~e~l~~pl~~----------~~~~~~------~g~~----------~~~~--vLL~GppGtGKT~LAral 348 (620)
+|+++.++.+.+.+.||+.+ ++.|+. .|+. +|+| +|||||||||||+||+++
T Consensus 1023 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~~~ 1102 (1706)
T 3cmw_A 1023 SAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 1102 (1706)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHHHH
Confidence 99999999999999999854 566766 4443 4455 999999999999999999
Q ss_pred Hhhhhhc-----eeeecC--ccee--------eeeccc----cccchHHHHHhhhccCCeeeeeccchhHHhhcC---CC
Q 007053 349 ANECQAN-----FISVKG--PELL--------TMWFGE----SEANVREIFDKARQSAPCVLFFDELDSIATQRG---SS 406 (620)
Q Consensus 349 A~~l~~~-----~i~i~~--~~l~--------~~~~g~----se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~---~~ 406 (620)
+.+...+ |+.+.. ++++ ++|+++ +|+.++.+|..|+...||+||+|++++|++.+. ..
T Consensus 1103 ~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~ 1182 (1706)
T 3cmw_A 1103 IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 1182 (1706)
T ss_dssp HHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCT
T ss_pred HHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccccccccc
Confidence 9988665 555543 2233 567777 889999999999999999999999999998842 22
Q ss_pred CCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 407 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 407 ~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
.....+...|+++++|+.|+++....+|+|| +||+.
T Consensus 1183 ~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1183 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 1112367789999999999988777888888 55554
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=8e-17 Score=167.72 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=140.0
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 368 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~ 368 (620)
.+.+|+++.|.+..++.+.+.+.... . .-.++.++||+||||||||++|+++++.++.+|+.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 34478999999999999988876421 1 1124578999999999999999999999999999998876521
Q ss_pred ccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC----------------Ccc
Q 007053 369 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKK 432 (620)
Q Consensus 369 ~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----------------~~~ 432 (620)
...+...|..+ ...+++|||||+|.+... ....|+..++... ...
T Consensus 77 ----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 ----PGDLAAILANS-LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ----HHHHHHHHTTT-CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ----hHHHHHHHHHh-ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 22333334331 145679999999987532 2233333333211 012
Q ss_pred eEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHH
Q 007053 433 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 511 (620)
Q Consensus 433 ~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A 511 (620)
++++|++||.+..+++++.+ ||+..+.+++|+.+++..+++.++...... .+..+..++..+.|+ ++++.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHH
Confidence 47899999999999999987 998899999999999999999988654432 122366777877654 57788888777
Q ss_pred HHHH
Q 007053 512 CKYA 515 (620)
Q Consensus 512 ~~~A 515 (620)
...+
T Consensus 215 ~~~a 218 (324)
T 1hqc_A 215 RDFA 218 (324)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 6554
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=6.2e-17 Score=188.46 Aligned_cols=248 Identities=21% Similarity=0.250 Sum_probs=174.1
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i 359 (620)
.-.|+++.|.+..++++.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34788999999999998887764 246789999999999999999999987 4456777
Q ss_pred cCccee--eeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 360 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 360 ~~~~l~--~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
++..+. .++.|..+..++.+|..+....++||||||+|.+.+..... .....+.+.|...+ ....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~~~~L~~~l----~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIKPLL----SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHHHHHHSSCS----SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHHHHHHHHHH----hCCCeEEE
Confidence 777666 46778888899999999988888999999999998654321 11223333343333 34567888
Q ss_pred ccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC----CC-CCcChHHHHhhcCCC-----CCC
Q 007053 438 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP----VS-KDVDLRALAKYTQGF-----SGA 502 (620)
Q Consensus 438 atTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~----l~-~dv~l~~LA~~t~G~-----sg~ 502 (620)
++||.++ .+|+++.+ ||. .+.|+.|+.++|.+||+.+..... +. .+..+..++..+.+| .+.
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTH
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCch
Confidence 8887643 57899998 998 799999999999999998765421 11 122355566665543 444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHh----hcCChHHHHHHHHHHHH
Q 007053 503 DITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR----RSVSDADIRKYQAFAQT 578 (620)
Q Consensus 503 DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~----psvs~~di~~~e~~k~~ 578 (620)
.+..++.+|+..+... .. ......++.+|+..++.... +.++|+++..+..+++.
T Consensus 397 ~~i~lld~a~~~~~~~------------~~---------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~ 455 (758)
T 1r6b_X 397 KAIDVIDEAGARARLM------------PV---------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDR 455 (758)
T ss_dssp HHHHHHHHHHHHHHHS------------SS---------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc------------cc---------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHH
Confidence 5667776665332210 00 01123589999999998874 36789999888888877
Q ss_pred Hhhhc
Q 007053 579 LQQSR 583 (620)
Q Consensus 579 l~~~~ 583 (620)
+.+.+
T Consensus 456 l~~~v 460 (758)
T 1r6b_X 456 LKMLV 460 (758)
T ss_dssp HTTTS
T ss_pred HHhhc
Confidence 76544
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.67 E-value=3.5e-16 Score=172.30 Aligned_cols=185 Identities=21% Similarity=0.331 Sum_probs=131.4
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i 359 (620)
+-.++++.|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899999999999888764 235679999999999999999999997 6778888
Q ss_pred cCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEcc
Q 007053 360 KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 439 (620)
Q Consensus 360 ~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIat 439 (620)
++. ..|.|+.+..++.+|..+....|+||||| +.. ...+.|+..|. .+.+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~~~---------~a~~~L~~~L~----~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------AAI---------DASNILKPSLA----RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C-----------------CCCTT----SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------Cch---------hHHHHHHHhhc----CCCEEEEec
Confidence 887 67888888999999999998889999999 000 12233444443 456889999
Q ss_pred CCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-----CCcChHHHHhhcCCCCCC-----cH
Q 007053 440 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-----KDVDLRALAKYTQGFSGA-----DI 504 (620)
Q Consensus 440 Tn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-----~dv~l~~LA~~t~G~sg~-----DL 504 (620)
||.++ .+++++++ ||. .+.|+.|+.+++.+||+.++...... .+..+..++..+.+|.+. ..
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHH
Confidence 99887 58999999 997 69999999999999999887653221 122356666666655443 56
Q ss_pred HHHHHHHHHHH
Q 007053 505 TEICQRACKYA 515 (620)
Q Consensus 505 ~~l~~~A~~~A 515 (620)
..++.+|+..+
T Consensus 375 i~ll~~a~~~~ 385 (468)
T 3pxg_A 375 IDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777776544
No 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=2.4e-16 Score=183.54 Aligned_cols=265 Identities=19% Similarity=0.274 Sum_probs=172.3
Q ss_pred chhhhhccccCcchh-----hHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccccccee
Q 007053 212 GVRKIAKDTHGYVGA-----DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVV 286 (620)
Q Consensus 212 ~l~~lA~~t~gf~Ga-----Dl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~ 286 (620)
.++.++..+.||... .+..++.+|+..+.. .+.. . ....|+.+|+..++..... .
T Consensus 377 al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~--~~~~---~--------~~~~v~~~di~~~~~~~~~-------i 436 (758)
T 1r6b_X 377 AVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL--MPVS---K--------RKKTVNVADIESVVARIAR-------I 436 (758)
T ss_dssp HHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHH--SSSC---C--------CCCSCCHHHHHHHHHHHSC-------C
T ss_pred HHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhc--cccc---c--------cCCccCHHHHHHHHHHhcC-------C
Confidence 355677777777654 566677776543221 1100 0 1235677788777654321 1
Q ss_pred ecccccc--------------ccccchHHHHHHHHHhhcCcCCChhhhhhcCC----CCCceeeeecCCCChhHHHHHHH
Q 007053 287 EVPNVNW--------------EDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAI 348 (620)
Q Consensus 287 ~~p~v~~--------------~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~LAral 348 (620)
..+.+.| .++.|.+.+++.+...+... ..|+ .|..++||+||||||||++|+++
T Consensus 437 p~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 437 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp CCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHH
T ss_pred CccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 1112222 34677777777776665431 1232 23447999999999999999999
Q ss_pred HhhhhhceeeecCcceeee-----eccccccch-----HHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHH
Q 007053 349 ANECQANFISVKGPELLTM-----WFGESEANV-----REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 418 (620)
Q Consensus 349 A~~l~~~~i~i~~~~l~~~-----~~g~se~~i-----~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl 418 (620)
|+.++.+|+.++|+++... .+|.....+ ..+....+...++||||||||.+. ..++
T Consensus 509 a~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~ 574 (758)
T 1r6b_X 509 SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVF 574 (758)
T ss_dssp HHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC--------------HHHH
T ss_pred HHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC--------------HHHH
Confidence 9999999999999887542 222221111 123344445567899999999864 3467
Q ss_pred HHHhhhhcCCCC---------cceEEEEccCCCCC-------------------------CCcccccCCCCCCceeeeeC
Q 007053 419 NQLLTEMDGMSA---------KKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPL 464 (620)
Q Consensus 419 ~~LL~~ld~~~~---------~~~viVIatTn~~~-------------------------~Ld~al~rpgRf~~~i~~~~ 464 (620)
+.|+..|+...- ..+++||+|||... .++|++++ ||+.++.|++
T Consensus 575 ~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~ 652 (758)
T 1r6b_X 575 NILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDH 652 (758)
T ss_dssp HHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCC
T ss_pred HHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCC
Confidence 777777763210 13578999999754 56788887 9999999999
Q ss_pred CChhHHHHHHHHhhccC---------CCC-CCcChHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHHH
Q 007053 465 PDEESRLQIFKACLRKS---------PVS-KDVDLRALAKYT--QGFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 465 P~~~eR~~Il~~~l~~~---------~l~-~dv~l~~LA~~t--~G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
|+.+++..|++.++... .+. .+..+..|++.. .++..++|..+++++...++.+.+
T Consensus 653 l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 653 LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999987532 111 122255666644 356689999999999888777654
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=1.6e-16 Score=166.23 Aligned_cols=197 Identities=18% Similarity=0.239 Sum_probs=131.1
Q ss_pred ccccccccc-c--hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCc
Q 007053 289 PNVNWEDIG-G--LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 362 (620)
Q Consensus 289 p~v~~~di~-G--l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~ 362 (620)
|..+|+++. | .......++.++..+- ..+.+++|+||||||||+||+++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456778875 3 4445555666655421 235689999999999999999999998 7889999988
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
++...+.+.........|.... ..+++|||||++.+...+ .....++..++.....+..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~------------~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE------------RTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH------------HHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 7755443333222223333332 236899999999986321 122233333332222344677777777
Q ss_pred CC---CCcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHH
Q 007053 443 PD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKY 514 (620)
Q Consensus 443 ~~---~Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~ 514 (620)
+. .+++++.+ ||. ..+.+++ +.++|.+|++.++....+. .+..+..|+..+ -+.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 66 57889987 885 6789999 9999999999988654332 122367788887 3567777777777655
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=2e-16 Score=166.42 Aligned_cols=175 Identities=23% Similarity=0.353 Sum_probs=100.6
Q ss_pred hhccCCccccccceeeccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 272 ALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 272 al~~~~ps~~r~~~~~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
++..+.|+..+. ...++.+|+++.|.+..++.+...... ....++||+||||||||++|+++++.
T Consensus 4 ~~~~~~~~~~~~--~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 4 AVARLQPSASGA--KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp ----------------CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred cccccCCcccCC--CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHh
Confidence 344455554433 234678899999999987765443322 12356999999999999999999998
Q ss_pred hhhce----eeecCcc---------------------eeeeeccccccc------hHHHHHhhh---------ccCCeee
Q 007053 352 CQANF----ISVKGPE---------------------LLTMWFGESEAN------VREIFDKAR---------QSAPCVL 391 (620)
Q Consensus 352 l~~~~----i~i~~~~---------------------l~~~~~g~se~~------i~~if~~A~---------~~~p~IL 391 (620)
++... ..++|.. ++....+.+... +...|.... ...+++|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl 148 (350)
T 1g8p_A 69 LPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYL 148 (350)
T ss_dssp SCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEE
T ss_pred CccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEE
Confidence 75210 0011111 000001111111 112222221 1236799
Q ss_pred eeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC-------C----CcceEEEEccCCCCC-CCcccccCCCCCCce
Q 007053 392 FFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------S----AKKTVFIIGATNRPD-IIDPALLRPGRLDQL 459 (620)
Q Consensus 392 ~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~-------~----~~~~viVIatTn~~~-~Ld~al~rpgRf~~~ 459 (620)
||||+|.+... ..+.|+..++.. . ....+++|+|||..+ .+++++++ ||+..
T Consensus 149 ~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~ 212 (350)
T 1g8p_A 149 YIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLS 212 (350)
T ss_dssp EETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEE
T ss_pred EEeChhhCCHH--------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceE
Confidence 99999987532 334455444321 0 012688999999754 79999998 99988
Q ss_pred eeeeCC-ChhHHHHHHHHh
Q 007053 460 IYIPLP-DEESRLQIFKAC 477 (620)
Q Consensus 460 i~~~~P-~~~eR~~Il~~~ 477 (620)
+.+++| +.+.+.+|++.+
T Consensus 213 ~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp EECCCCCSHHHHHHHHHHH
T ss_pred EEcCCCCcHHHHHHHHHHH
Confidence 999999 577777888763
No 51
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=2e-16 Score=168.28 Aligned_cols=195 Identities=24% Similarity=0.302 Sum_probs=132.7
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----------hhceeeec
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----------QANFISVK 360 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----------~~~~i~i~ 360 (620)
..+++.|.+..++++.+.+...+. -..+++++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 347899999999999887764322 1345689999999999999999999987 78888888
Q ss_pred Cccee-e----------e-------eccccc-cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHH-HHH
Q 007053 361 GPELL-T----------M-------WFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV-LNQ 420 (620)
Q Consensus 361 ~~~l~-~----------~-------~~g~se-~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rv-l~~ 420 (620)
|.... + . ..+... ..+..++..+....+ +|||||+|.+..... ..+ +..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----------~~~~l~~ 157 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----------GDIVLYQ 157 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----------SHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----------CceeHHH
Confidence 76532 1 0 011111 223444444444443 999999999975321 123 555
Q ss_pred HhhhhcCCCCcceEEEEccCCCC---CCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc----CCCCCCcChHHHH
Q 007053 421 LLTEMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK----SPVSKDVDLRALA 493 (620)
Q Consensus 421 LL~~ld~~~~~~~viVIatTn~~---~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~----~~l~~dv~l~~LA 493 (620)
|+... .++.+|++||.+ +.+++++.+ ||...+.|++|+.+++.+||+.++.. ..+. +..+..++
T Consensus 158 l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~ 228 (384)
T 2qby_B 158 LLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIA 228 (384)
T ss_dssp HHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHH
T ss_pred HhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHH
Confidence 55443 567888888877 678888887 88779999999999999999998753 2222 23366777
Q ss_pred hhcCCCCC--CcHHHHHHHHHHHH
Q 007053 494 KYTQGFSG--ADITEICQRACKYA 515 (620)
Q Consensus 494 ~~t~G~sg--~DL~~l~~~A~~~A 515 (620)
+.+.+.+| +.+.++|+.|...|
T Consensus 229 ~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 229 AISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHh
Confidence 77763322 33445666665444
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=2e-16 Score=163.77 Aligned_cols=209 Identities=22% Similarity=0.317 Sum_probs=141.7
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee--
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 367 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~-- 367 (620)
..++.|.+.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 3567899999999888876421000 0011234579999999999999999999988 557888988766421
Q ss_pred ---ecccccc----c-hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------C
Q 007053 368 ---WFGESEA----N-VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------A 430 (620)
Q Consensus 368 ---~~g~se~----~-i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~ 430 (620)
++|.... . ...+.........++|||||+|.+.+ .+.+.|+..|+... .
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP--------------DVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEECTTSCEEE
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH--------------HHHHHHHHHHhcCEEEcCCCCEEE
Confidence 1221110 0 01222223334458999999998742 35566666665321 1
Q ss_pred cceEEEEccCCC--------------------------CCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC--
Q 007053 431 KKTVFIIGATNR--------------------------PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-- 482 (620)
Q Consensus 431 ~~~viVIatTn~--------------------------~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~-- 482 (620)
..++++|+|||. ...+++++++ ||+..+.+++|+.+++..|++.+++...
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 125778999998 4467888887 9999999999999999999999875421
Q ss_pred -----CC---CCcChHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 483 -----VS---KDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 483 -----l~---~dv~l~~LA~~t~--G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
.. .+..+..|+.... ..+.++|.++++++...++.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 236 LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp HHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred HHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 11 1223566676655 577899999999999988877654
No 53
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.65 E-value=2.3e-16 Score=168.64 Aligned_cols=224 Identities=18% Similarity=0.246 Sum_probs=137.6
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhh-----------------hcCCCCCceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFE-----------------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~-----------------~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
+.|+|++.+++.|...+...+....... .-...++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3588999999999988743322221100 00123467899999999999999999999999999
Q ss_pred eeecCccee-eeecccc-ccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-
Q 007053 357 ISVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS- 429 (620)
Q Consensus 357 i~i~~~~l~-~~~~g~s-e~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~- 429 (620)
+.+++..+. ..|.|.. +..+..+|..+. ...++||||||+|.+...+.............+.+.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3555554 344556665432 235789999999999876432211111122347788888887531
Q ss_pred ------------------CcceEEEEccCCCC-----------------------------------------CCCcccc
Q 007053 430 ------------------AKKTVFIIGATNRP-----------------------------------------DIIDPAL 450 (620)
Q Consensus 430 ------------------~~~~viVIatTn~~-----------------------------------------~~Ld~al 450 (620)
...++++|+++|.. ..+.|.+
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 01345667666520 1234555
Q ss_pred cCCCCCCceeeeeCCChhHHHHHHHH----hhc---------cCCCC-CCcChHHHHhhcC--CCCCCcHHHHHHHHHHH
Q 007053 451 LRPGRLDQLIYIPLPDEESRLQIFKA----CLR---------KSPVS-KDVDLRALAKYTQ--GFSGADITEICQRACKY 514 (620)
Q Consensus 451 ~rpgRf~~~i~~~~P~~~eR~~Il~~----~l~---------~~~l~-~dv~l~~LA~~t~--G~sg~DL~~l~~~A~~~ 514 (620)
.+ ||+.++.|++++.++...|+.. +++ +..+. .+..+..|+.... ....++|.++++++...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 55 8888999999999999999973 211 11111 1222556666643 35679999999988877
Q ss_pred HHHHH
Q 007053 515 AIREN 519 (620)
Q Consensus 515 A~~~~ 519 (620)
++.+.
T Consensus 339 ~~~~~ 343 (376)
T 1um8_A 339 IMFDL 343 (376)
T ss_dssp HHHTG
T ss_pred HHhhc
Confidence 77654
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=2.9e-17 Score=155.96 Aligned_cols=161 Identities=20% Similarity=0.373 Sum_probs=114.4
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceee
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 358 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~ 358 (620)
.+..|+++.|.++..+++.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 345788999999999998887653 235789999999999999999999987 567777
Q ss_pred ecCccee--eeeccccccchHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEE
Q 007053 359 VKGPELL--TMWFGESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 435 (620)
Q Consensus 359 i~~~~l~--~~~~g~se~~i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~vi 435 (620)
+++..+. ..+.+.....+..++..+. ...+++|||||+|.+...+... ........+..+ ++ ..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~---~~----~~~~~ 153 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPA---LA----RGELH 153 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHH---HH----TTSCC
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHh---hc----cCCeE
Confidence 7776654 2344445556777777554 3557899999999997543221 011222233333 32 23567
Q ss_pred EEccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHH
Q 007053 436 IIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFK 475 (620)
Q Consensus 436 VIatTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~ 475 (620)
+|++||.+. .+++++++ ||. .+++++|+.++|.+||+
T Consensus 154 ~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 154 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp EEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTCC
T ss_pred EEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHhC
Confidence 778887765 68899998 998 69999999999988763
No 55
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=5.4e-16 Score=172.83 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=133.4
Q ss_pred cccccccccchHHHHHHHHHhhcCcC-CChhhhhhcCCC---CCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPV-EHPEKFEKFGMS---PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl-~~~~~~~~~g~~---~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
.+.+|++++|.+..+++|++++.... ..+..|...|.. +++++||+||||||||++|+++|++++.+++.++++++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 34589999999999999999887421 112233333332 56899999999999999999999999999999999887
Q ss_pred eeeecccc-------ccchHHHHHhh-----hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcc
Q 007053 365 LTMWFGES-------EANVREIFDKA-----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 432 (620)
Q Consensus 365 ~~~~~g~s-------e~~i~~if~~A-----~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~ 432 (620)
.+.+.... ...+..+|..+ ....++||||||+|.+.... ...+..|+..++.. ..
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRKT--ST 180 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHHC--SS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHhc--CC
Confidence 65432111 11133445444 23567899999999986421 11244455555422 23
Q ss_pred eEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc--CCCCCCcChHHHHhhcCCCCCCcHHHHHHH
Q 007053 433 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK--SPVSKDVDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 433 ~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~--~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
.+++++++.....+.+ +. |+...+.|++|+.+++.++|+..+.. ..+..+ .+..|++.+ ++|+..+++.
T Consensus 181 ~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s----~GdiR~~i~~ 251 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTT----RGDIRQVINL 251 (516)
T ss_dssp CEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHT----TTCHHHHHHH
T ss_pred CEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc----CCcHHHHHHH
Confidence 4566555544344443 44 44568999999999999999887754 333333 367777776 4577766655
Q ss_pred HH
Q 007053 511 AC 512 (620)
Q Consensus 511 A~ 512 (620)
..
T Consensus 252 L~ 253 (516)
T 1sxj_A 252 LS 253 (516)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 56
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.64 E-value=1.5e-16 Score=174.07 Aligned_cols=184 Identities=23% Similarity=0.364 Sum_probs=127.3
Q ss_pred cccccccccchHHHH---HHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 289 PNVNWEDIGGLENVK---RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k---~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
.+.+|+++.|.+..+ +.|+..+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 345789999999988 677766653 123679999999999999999999999999999886542
Q ss_pred eeeccccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC-
Q 007053 366 TMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT- 440 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT- 440 (620)
....++.+|..+.. ..++||||||||.+.... .+.|+..++. ..+++|++|
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~--------------q~~LL~~le~----~~v~lI~att 142 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ--------------QDAFLPHIED----GTITFIGATT 142 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEES
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH--------------HHHHHHHHhc----CceEEEecCC
Confidence 23446666666553 457899999999986432 2335666653 335555555
Q ss_pred -CCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC-------C-CCCcChHHHHhhcCCCCCCcHHHHHHHH
Q 007053 441 -NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-------V-SKDVDLRALAKYTQGFSGADITEICQRA 511 (620)
Q Consensus 441 -n~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~-------l-~~dv~l~~LA~~t~G~sg~DL~~l~~~A 511 (620)
|....+++++++ |+. ++.|++|+.+++..+++.++.... + -.+..+..|+..+.| +.+++.++++.+
T Consensus 143 ~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 143 ENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp SCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 445578999998 886 788999999999999999886521 1 112235667776543 345555556555
Q ss_pred HHH
Q 007053 512 CKY 514 (620)
Q Consensus 512 ~~~ 514 (620)
...
T Consensus 219 ~~~ 221 (447)
T 3pvs_A 219 ADM 221 (447)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.64 E-value=1.5e-16 Score=173.94 Aligned_cols=200 Identities=18% Similarity=0.279 Sum_probs=133.2
Q ss_pred ccccccccc-c--hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeec
Q 007053 289 PNVNWEDIG-G--LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVK 360 (620)
Q Consensus 289 p~v~~~di~-G--l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~ 360 (620)
|..+|+++. | .......+..+...+ + . +.+++||||||||||+||+++++.+ +.++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 456788876 4 333444455444432 1 1 5679999999999999999999988 67788888
Q ss_pred CcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 361 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 361 ~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
+.++...+.+.........|.......+++|||||++.+.... .....|+..++.+...+..+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~------------~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT------------GVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH------------HHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 8776544333222222233443333367899999999986321 1223333433332234456666666
Q ss_pred CCCCC---CcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhccC--CCCCCcChHHHHhhcCCCCCCcHHHHHHHHHH
Q 007053 441 NRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKS--PVSKDVDLRALAKYTQGFSGADITEICQRACK 513 (620)
Q Consensus 441 n~~~~---Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~~~--~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~ 513 (620)
+.+.. +++++++ ||. ..+.+++|+.++|.+||+..+... .+..+ .+..|+..+.| +.+++..+++++..
T Consensus 236 ~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 236 REPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLV 311 (440)
T ss_dssp SCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 65654 7888887 775 789999999999999999988643 33333 37788888764 67888888888876
Q ss_pred HHH
Q 007053 514 YAI 516 (620)
Q Consensus 514 ~A~ 516 (620)
.|.
T Consensus 312 ~a~ 314 (440)
T 2z4s_A 312 YKE 314 (440)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=7.8e-16 Score=163.02 Aligned_cols=203 Identities=19% Similarity=0.282 Sum_probs=134.5
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh------hhceeeecCcc
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPE 363 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l------~~~~i~i~~~~ 363 (620)
...++++.|.+..++.|.+++...+.. ..+..++|+||+|||||+|++++++.+ +..++.++|..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 344588999999999999887643211 346789999999999999999999988 67788888654
Q ss_pred eee------e----------eccccccc-hHHHHHhhhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 364 LLT------M----------WFGESEAN-VREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 364 l~~------~----------~~g~se~~-i~~if~~A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
... . ..+.+... ...++...... .|++|+|||++.+..... ..++..++..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~ 156 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRIN 156 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhch
Confidence 221 0 01111111 33344443333 389999999999975321 23566676666
Q ss_pred cCCCCcceEEEEccCCCC---CCCcccccCCCCCC-ceeeeeCCChhHHHHHHHHhhccC----CCCCCcChHHHHhhcC
Q 007053 426 DGMSAKKTVFIIGATNRP---DIIDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRKS----PVSKDVDLRALAKYTQ 497 (620)
Q Consensus 426 d~~~~~~~viVIatTn~~---~~Ld~al~rpgRf~-~~i~~~~P~~~eR~~Il~~~l~~~----~l~~dv~l~~LA~~t~ 497 (620)
+.. ...++.+|++||.+ ..+++.+.+ ||. ..+.+++++.+++.++++.++... .+. +..+..++..+.
T Consensus 157 ~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~ 232 (386)
T 2qby_A 157 SEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAA 232 (386)
T ss_dssp HSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHH
T ss_pred hhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHH
Confidence 544 34467788888876 356777776 665 489999999999999999876531 221 222455666665
Q ss_pred ---CCCCCcHHHHHHHHHHHHH
Q 007053 498 ---GFSGADITEICQRACKYAI 516 (620)
Q Consensus 498 ---G~sg~DL~~l~~~A~~~A~ 516 (620)
| +++.+.++|+.|+..|.
T Consensus 233 ~~~G-~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 233 REHG-DARRALDLLRVSGEIAE 253 (386)
T ss_dssp HTTC-CHHHHHHHHHHHHHHHH
T ss_pred HhcC-CHHHHHHHHHHHHHHHH
Confidence 4 34455567777766554
No 59
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=1e-15 Score=148.75 Aligned_cols=172 Identities=23% Similarity=0.270 Sum_probs=118.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~ 363 (620)
++..|+++.|.+..++.+.+++... ...++||+||||||||++++++++.+ ...++.+++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 4567889999999999999887641 23359999999999999999999886 34566666654
Q ss_pred eeeeeccccccchHHHHHhhh------ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 364 LLTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~------~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
... ...+...+.... ...+.+|||||+|.+... ..+.|+..++.. ..++.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~--~~~~~~i 136 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRTMEMY--SKSCRFI 136 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHHHHHHHHHT--TTTEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHHHHHHHHhc--CCCCeEE
Confidence 321 112222222211 246789999999997532 234455555432 2346777
Q ss_pred ccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCC
Q 007053 438 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 438 atTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G 498 (620)
++||.+..+++++.+ ||. .+.+++|+.+++.++++.++...... .+..+..+++.+.|
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 195 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888889999988 887 89999999999999999887543322 12235566666543
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=6.6e-16 Score=152.74 Aligned_cols=206 Identities=11% Similarity=0.150 Sum_probs=132.3
Q ss_pred cccccccccc---hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCc
Q 007053 289 PNVNWEDIGG---LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGP 362 (620)
Q Consensus 289 p~v~~~di~G---l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~ 362 (620)
|..+|+++.| .....+.+..++.. ..+.++||+||||||||++|+++++++. .+++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3467888876 34566666665543 2357899999999999999999999885 567777776
Q ss_pred ceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceE-EEEccCC
Q 007053 363 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATN 441 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~v-iVIatTn 441 (620)
++...+ ...+... ..+.+|||||++.+.... .....|+..++.......+ +|++++.
T Consensus 90 ~~~~~~--------~~~~~~~--~~~~vliiDe~~~~~~~~------------~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASIS--------TALLEGL--EQFDLICIDDVDAVAGHP------------LWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGGSC--------GGGGTTG--GGSSEEEEETGGGGTTCH------------HHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred HHHHHH--------HHHHHhc--cCCCEEEEeccccccCCH------------HHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 654322 1122221 346799999999985311 1122333333322223333 5555554
Q ss_pred CCC---CCcccccCCCCCC--ceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 442 RPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 442 ~~~---~Ld~al~rpgRf~--~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
.+. .+++.+.+ ||. ..+.+++|+.+++.++++.+++...+. .+..+..+++.+.| +.+++.++++.+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 444 34577776 775 799999999999999999988654432 12235667777654 5667777777776655
Q ss_pred HHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHH
Q 007053 516 IRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMK 558 (620)
Q Consensus 516 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~ 558 (620)
..+ ...|+.+++.++++
T Consensus 225 ~~~--------------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVH--------------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHH--------------------------TCCCCHHHHHHHHT
T ss_pred HHh--------------------------CCCCcHHHHHHHhh
Confidence 332 12488888888774
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.5e-16 Score=163.22 Aligned_cols=159 Identities=12% Similarity=0.081 Sum_probs=116.2
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh----------hceeeecCccee
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELL 365 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~----------~~~i~i~~~~l~ 365 (620)
+.|.++..++|...+...+ .-..+.+++|+||||||||++++++++++. +.+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 5567777777776665433 224678899999999999999999999983 568899987754
Q ss_pred ee----------e------ccccccchHHHHHhh--hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 366 TM----------W------FGESEANVREIFDKA--RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 366 ~~----------~------~g~se~~i~~if~~A--~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
+. . .+.....++.+|... ....++||||||+|.|. + ..++..|+....
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~----------q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---S----------EKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---C----------THHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---c----------chHHHHHHhccc-
Confidence 32 1 123445677888875 34567899999999986 1 235666665443
Q ss_pred CCCcceEEEEccCCCCCC----CcccccCCCCCC-ceeeeeCCChhHHHHHHHHhhcc
Q 007053 428 MSAKKTVFIIGATNRPDI----IDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~----Ld~al~rpgRf~-~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
....+++||+++|..+. |++++++ ||. ..|.|++++.++..+|++..++.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23457889999988764 4556665 886 68999999999999999998865
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.62 E-value=1e-15 Score=160.40 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=107.1
Q ss_pred ccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCc------cee
Q 007053 292 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELL 365 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~------~l~ 365 (620)
.+.++.|.+.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 356788999998888766543 35899999999999999999999999999888873 122
Q ss_pred eeeccccccchHHHHHhhhccC---CeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC---------CCcce
Q 007053 366 TMWFGESEANVREIFDKARQSA---PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM---------SAKKT 433 (620)
Q Consensus 366 ~~~~g~se~~i~~if~~A~~~~---p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~---------~~~~~ 433 (620)
+....... ...|. .... .+||||||++.+.+ ...+.|+..|+.. .....
T Consensus 90 g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~ 150 (331)
T 2r44_A 90 GTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNP 150 (331)
T ss_dssp EEEEEETT---TTEEE--EEECTTCSSEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSS
T ss_pred CceeecCC---CCceE--eccCcccccEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCC
Confidence 21110000 00010 0112 37999999998653 2344455544321 11235
Q ss_pred EEEEccCCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC
Q 007053 434 VFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 481 (620)
Q Consensus 434 viVIatTn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~ 481 (620)
+++|+|+|..+ .+++++++ ||+..+.+++|+.+++.+||+.++...
T Consensus 151 ~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 151 FLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp CEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 77888888553 38999998 999889999999999999999987653
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=1.7e-15 Score=176.27 Aligned_cols=186 Identities=22% Similarity=0.320 Sum_probs=132.0
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i 359 (620)
.-.++++.|.+..++++.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34678999999999999888764 235679999999999999999999997 6778877
Q ss_pred cCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEcc
Q 007053 360 KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 439 (620)
Q Consensus 360 ~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIat 439 (620)
++ ..+|.|+.+..++.+|..+....|+||||| +. ....+.|+..|+ .+.+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~~---------~~~~~~L~~~l~----~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA---------IDASNILKPSLA----RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C-----------------CCCTT----SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc---------Cc---------hhHHHHHHHHHh----cCCEEEEeC
Confidence 77 567889999999999999999899999999 00 012334544444 456889999
Q ss_pred CCCCC-----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcC-----hHHHHhhc-----CCCCCCcH
Q 007053 440 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-----LRALAKYT-----QGFSGADI 504 (620)
Q Consensus 440 Tn~~~-----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~-----l~~LA~~t-----~G~sg~DL 504 (620)
||..+ .++++++| ||. .+.|+.|+.+++.+||+.+.........+. +..++..+ .++.+...
T Consensus 298 t~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 99888 69999999 994 799999999999999998876543222222 44455443 34556667
Q ss_pred HHHHHHHHHHHH
Q 007053 505 TEICQRACKYAI 516 (620)
Q Consensus 505 ~~l~~~A~~~A~ 516 (620)
..++.+|+..+.
T Consensus 375 i~ll~~a~~~~~ 386 (758)
T 3pxi_A 375 IDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777765443
No 64
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.60 E-value=1.9e-15 Score=148.36 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=130.7
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeec---------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK--------- 360 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~--------- 360 (620)
+..|+++.|.+..++.|.+.+... ..+..++|+||||||||++++++++.+........
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 446888999999999998887631 22457999999999999999999998865321110
Q ss_pred -------Ccceeeeecc--ccccchHHHHHhhh----ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 361 -------GPELLTMWFG--ESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 361 -------~~~l~~~~~g--~se~~i~~if~~A~----~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
..++...... .....++.++..+. ...+.+|+|||+|.+.. ..++.|+..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------------~~~~~l~~~l~~ 152 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEE 152 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------------HHHHHHHHHHHS
T ss_pred HHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH--------------HHHHHHHHHHhc
Confidence 0111111111 11223555665543 23578999999998642 245566666664
Q ss_pred CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHH
Q 007053 428 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~ 506 (620)
. ..++.+|++||.+..+++.+.+ |+ ..+.+++|+.++..++++.++...... .+..+..+++.+.| +++.+.+
T Consensus 153 ~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~ 226 (250)
T 1njg_A 153 P--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALS 226 (250)
T ss_dssp C--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHH
T ss_pred C--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3 3357777788888888888887 65 589999999999999999988654322 22336778888876 6777777
Q ss_pred HHHHHH
Q 007053 507 ICQRAC 512 (620)
Q Consensus 507 l~~~A~ 512 (620)
+++.|.
T Consensus 227 ~~~~~~ 232 (250)
T 1njg_A 227 LTDQAI 232 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=3.7e-15 Score=173.51 Aligned_cols=204 Identities=18% Similarity=0.271 Sum_probs=141.8
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeec
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF 369 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~ 369 (620)
..++.|.+.+++.+.+.+........ ....|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 46788999999988888765221100 001222369999999999999999999997 67899999999876654
Q ss_pred cccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------CcceEEEEccC
Q 007053 370 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGAT 440 (620)
Q Consensus 370 g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~---------~~~~viVIatT 440 (620)
.. ...++...+...++||||||||.+. ..+++.|+..|+... ...++++|+||
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAH--------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSC--------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccC--------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 43 2223334444566899999999864 346677777776421 22357888999
Q ss_pred CCCCC------------CcccccCCCCCCceeeeeCCChhHHHHHHHHhhccC-------CCC---CCcChHHHHhhc--
Q 007053 441 NRPDI------------IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS-------PVS---KDVDLRALAKYT-- 496 (620)
Q Consensus 441 n~~~~------------Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~-------~l~---~dv~l~~LA~~t-- 496 (620)
|.+.. +.|++++ ||+.++.|++|+.+++.+|++.++... ... .+.-+..|++..
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCC
Confidence 96543 6788877 999999999999999999998877542 111 122255666543
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHH
Q 007053 497 QGFSGADITEICQRACKYAIRENI 520 (620)
Q Consensus 497 ~G~sg~DL~~l~~~A~~~A~~~~i 520 (620)
..+..++|+++++++...++.+.+
T Consensus 706 ~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp TTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHH
Confidence 345679999999998888777654
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=8.9e-16 Score=180.92 Aligned_cols=201 Identities=22% Similarity=0.331 Sum_probs=131.1
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i 359 (620)
+-.++++.|.+..++++.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45788999999998888877653 235679999999999999999999987 7789999
Q ss_pred cCccee--eeeccccccchHHHHHhhhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEE
Q 007053 360 KGPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 436 (620)
Q Consensus 360 ~~~~l~--~~~~g~se~~i~~if~~A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viV 436 (620)
+++.+. ..+.|+.+..++.+|..+... .|+||||||+|.+.+..... ....+.+.|...+. ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~------g~~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE------GAVDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc------chHHHHHHHHHHHh----CCCeEE
Confidence 998886 567788888899999998775 68999999999998654321 11122233333333 345678
Q ss_pred EccCCCCC----CCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-----CCcChHHHHhhcCC-----CCCC
Q 007053 437 IGATNRPD----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-----KDVDLRALAKYTQG-----FSGA 502 (620)
Q Consensus 437 IatTn~~~----~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-----~dv~l~~LA~~t~G-----~sg~ 502 (620)
|++||.++ .+++++.+ ||+. +.|+.|+.+++.+||+.++...... .+..+..++..+.+ |.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 88888664 47999998 9985 9999999999999998776532111 12235556665544 4455
Q ss_pred cHHHHHHHHHHHHH
Q 007053 503 DITEICQRACKYAI 516 (620)
Q Consensus 503 DL~~l~~~A~~~A~ 516 (620)
....++.+|+..+.
T Consensus 380 kai~lldea~a~~~ 393 (854)
T 1qvr_A 380 KAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56667766665443
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=5.3e-15 Score=157.26 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=134.9
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCc--eeeeecCCCChhHHHHHHHHhhh----hhceeeecCcc
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK--GVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPE 363 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~--~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~~~ 363 (620)
...++++.|.+..+++|.+++...+.. ..+. .++|+||||||||++++++++.+ +..++.++|..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 334578999999999998887642211 2233 79999999999999999999988 56788888765
Q ss_pred eeee---------ec-------cccccc-hHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh
Q 007053 364 LLTM---------WF-------GESEAN-VREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 425 (620)
Q Consensus 364 l~~~---------~~-------g~se~~-i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l 425 (620)
..+. .+ +..... ...+..... ...|.+|||||+|.+. ...+..|+..+
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLG 149 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHH
Confidence 4320 00 111111 112222221 2458899999999872 23556666666
Q ss_pred cCCCC--cceEEEEccCCCC---CCCcccccCCCCCCc-eeeeeCCChhHHHHHHHHhhccC---CCCCCcChHHHHhhc
Q 007053 426 DGMSA--KKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEESRLQIFKACLRKS---PVSKDVDLRALAKYT 496 (620)
Q Consensus 426 d~~~~--~~~viVIatTn~~---~~Ld~al~rpgRf~~-~i~~~~P~~~eR~~Il~~~l~~~---~l~~dv~l~~LA~~t 496 (620)
+.... ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+... ..-.+..+..+++.+
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 54322 1367788888877 567777766 7764 89999999999999999887541 111233467788888
Q ss_pred CCC--------CCCcHHHHHHHHHHHHHH
Q 007053 497 QGF--------SGADITEICQRACKYAIR 517 (620)
Q Consensus 497 ~G~--------sg~DL~~l~~~A~~~A~~ 517 (620)
.+. ..+.+.++|+.|+..|..
T Consensus 228 ~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 228 GAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp SBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 533 235567888888777654
No 68
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.56 E-value=8.5e-15 Score=152.82 Aligned_cols=152 Identities=21% Similarity=0.230 Sum_probs=113.9
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 369 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~ 369 (620)
+.+|+++.|.+.+++.|++++.. -..+..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 45789999999999999988873 12456688999999999999999999999999999987632
Q ss_pred cccccchHHHHHhhhc-----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC
Q 007053 370 GESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 444 (620)
Q Consensus 370 g~se~~i~~if~~A~~-----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~ 444 (620)
...++..+..... ..+.+|||||+|.+.. ....+.|+..++.. ..++.+|++||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAY--SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHH--GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhC--CCCcEEEEEeCCcc
Confidence 2333433333222 2568999999999861 11344555555432 24567888999999
Q ss_pred CCcccccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 445 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 445 ~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
.+++++++ ||. .+.|++|+.++|.+|++.++
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 99999998 885 79999999999877765543
No 69
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.55 E-value=2.3e-14 Score=148.18 Aligned_cols=183 Identities=22% Similarity=0.269 Sum_probs=125.4
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~ 363 (620)
.+.+|+++.|.+.+++.|...+.. + ...++||+||||||||++|+++++.+ +.+++.+++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 345789999999999999887764 1 12349999999999999999999986 45678888775
Q ss_pred eeeeeccccccchHHHHHhh-h-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 364 LLTMWFGESEANVREIFDKA-R-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A-~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
..+ .......+....... . ...+.+|||||+|.+.. ...+.|+..++.. ...+++|++||
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFILSCN 140 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEEEEEEES
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeC
Confidence 321 111111122222111 1 24578999999998753 2355677777653 24567777888
Q ss_pred CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHHHHH
Q 007053 442 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQ 509 (620)
Q Consensus 442 ~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~l~~ 509 (620)
.+..+.+++.+ |+. .+.|++|+.+++..+++.+++...+.- +..+..++..+ ++++..+.+
T Consensus 141 ~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~----~G~~r~~~~ 202 (319)
T 2chq_A 141 YVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS----GGDFRKAIN 202 (319)
T ss_dssp CGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTT----TTCHHHHHH
T ss_pred ChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHH
Confidence 88899999988 876 899999999999999999886554321 22345555544 445554443
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.55 E-value=9e-16 Score=145.44 Aligned_cols=152 Identities=21% Similarity=0.348 Sum_probs=107.6
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----------hhceeee
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 359 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----------~~~~i~i 359 (620)
+..|+++.|.+...+.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 44688999999998888877653 235689999999999999999999987 5667777
Q ss_pred cCccee--eeeccccccchHHHHHhhhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEE
Q 007053 360 KGPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 436 (620)
Q Consensus 360 ~~~~l~--~~~~g~se~~i~~if~~A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viV 436 (620)
++..+. ..+.+.....+..++..+... .|++|||||+|.+.+.+... . ....+.+.|...++ ...+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~---~~~~~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--E---GALDAGNILKPMLA----RGELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--T---TSCCTHHHHHHHHH----TTCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--c---cchHHHHHHHHHHh----cCCeeE
Confidence 766554 223344455577777766554 67899999999997543311 1 11123333333333 245778
Q ss_pred EccCCCCC-----CCcccccCCCCCCceeeeeCCC
Q 007053 437 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPD 466 (620)
Q Consensus 437 IatTn~~~-----~Ld~al~rpgRf~~~i~~~~P~ 466 (620)
|+++|.+. .+++++++ ||. .+++++|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 88888765 58999998 998 58898885
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.54 E-value=1.1e-13 Score=145.59 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=132.7
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeec
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 369 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~ 369 (620)
..+|+++.|.+.+++.+...+..... .-.++.+++|+||||||||||++++|+.++.++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 33678888888888887766543110 0124567999999999999999999999998877666554321
Q ss_pred cccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC----------------Ccce
Q 007053 370 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 433 (620)
Q Consensus 370 g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~----------------~~~~ 433 (620)
...+..++... ..++|+||||++.+.+. +.+.|+..+.... ....
T Consensus 90 ---~~~l~~~~~~~--~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 ---QGDMAAILTSL--ERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ---HHHHHHHHHHC--CTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCCCC---------------CC
T ss_pred ---HHHHHHHHHHc--cCCCEEEEcchhhcCHH--------------HHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 12233343322 24579999999987631 1122222221110 0123
Q ss_pred EEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHHHHHHHH
Q 007053 434 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRAC 512 (620)
Q Consensus 434 viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~l~~~A~ 512 (620)
+.++++|+++..|++.+++ ||...+.+++|+.+++.+|++...+...+.- +..+..+|..+.|. ++.+..+++++.
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~ 227 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVR 227 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHH
Confidence 5677789999999999998 9988899999999999999998876544322 22367788888764 577778888877
Q ss_pred HHHHH
Q 007053 513 KYAIR 517 (620)
Q Consensus 513 ~~A~~ 517 (620)
..|..
T Consensus 228 ~~a~~ 232 (334)
T 1in4_A 228 DMLTV 232 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=1.2e-14 Score=171.25 Aligned_cols=205 Identities=23% Similarity=0.346 Sum_probs=144.0
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCC----CCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcc
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 363 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~ 363 (620)
..|.++.|.+.+++.+...+.... .|+ .|..++||+||||||||++|+++++.+ +.+|+.++|++
T Consensus 555 ~l~~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 555 ELHKRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred HHhcccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 346789999999999988876421 121 233589999999999999999999998 78999999988
Q ss_pred eeee------------eccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--
Q 007053 364 LLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-- 429 (620)
Q Consensus 364 l~~~------------~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-- 429 (620)
+... |+|..+ ...+....+...+++|||||++.+. ..+++.|+..|+...
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~ 690 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH--------------PDVFNILLQILDDGRLT 690 (854)
T ss_dssp CCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC--------------HHHHHHHHHHHTTTEEC
T ss_pred ccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC--------------HHHHHHHHHHhccCceE
Confidence 7543 222222 1122233334456899999998863 346777888877432
Q ss_pred -------CcceEEEEccCCCC--------------------------CCCcccccCCCCCCceeeeeCCChhHHHHHHHH
Q 007053 430 -------AKKTVFIIGATNRP--------------------------DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 476 (620)
Q Consensus 430 -------~~~~viVIatTn~~--------------------------~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~ 476 (620)
...+++||+|||.. ..+.|.|+. ||+.++.|.+|+.+++..|++.
T Consensus 691 ~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~ 768 (854)
T 1qvr_A 691 DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEI 768 (854)
T ss_dssp CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHH
T ss_pred CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHH
Confidence 12367899999972 234566665 9999999999999999999998
Q ss_pred hhccC---------CCC-CCcChHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHHHH
Q 007053 477 CLRKS---------PVS-KDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIE 521 (620)
Q Consensus 477 ~l~~~---------~l~-~dv~l~~LA~~t~--G~sg~DL~~l~~~A~~~A~~~~i~ 521 (620)
++... .+. .+.-+..|+.... .+..++|.++++++...++.+.+.
T Consensus 769 ~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 769 QLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp HHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 87531 111 1223566777665 578899999999999888877654
No 73
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=4.3e-14 Score=148.51 Aligned_cols=191 Identities=18% Similarity=0.185 Sum_probs=125.1
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh------ceeeecCc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGP 362 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~------~~i~i~~~ 362 (620)
.+.+|+++.|.+.+++.|...+... ...++||+||||||||++|+++++.++. .++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 4557899999999999998887641 1234999999999999999999998753 46777776
Q ss_pred ceeeeeccccccchHHHHHh------------hhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCC
Q 007053 363 ELLTMWFGESEANVREIFDK------------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 430 (620)
Q Consensus 363 ~l~~~~~g~se~~i~~if~~------------A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~ 430 (620)
+..+ .+.....+...... .....+.||||||+|.+.+. ..+.|+..|+....
T Consensus 99 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~--------------~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 99 DERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD--------------AQSALRRTMETYSG 162 (353)
T ss_dssp SCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------------HHHHHHHHHHHTTT
T ss_pred cccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------------HHHHHHHHHHhcCC
Confidence 5321 01111111111110 01134569999999997532 23556666654432
Q ss_pred cceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHH
Q 007053 431 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQ 509 (620)
Q Consensus 431 ~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~ 509 (620)
...+|.+||.+..+++++++ |+. .+.|++|+.++...+++..+....+. .+..+..+++.+.|. .+.+.++++
T Consensus 163 --~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~ 236 (353)
T 1sxj_D 163 --VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQ 236 (353)
T ss_dssp --TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHH
T ss_pred --CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 34455577888889999988 886 89999999999999999887544332 223366777777642 333344444
Q ss_pred HHHHH
Q 007053 510 RACKY 514 (620)
Q Consensus 510 ~A~~~ 514 (620)
.+...
T Consensus 237 ~~~~~ 241 (353)
T 1sxj_D 237 SASKG 241 (353)
T ss_dssp HTHHH
T ss_pred HHHHh
Confidence 44433
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.50 E-value=2.7e-14 Score=157.82 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCc-----ceeee
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-----ELLTM 367 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~-----~l~~~ 367 (620)
.+.|.+.+++.+...+.. ..++||+||||||||+||+++|+.++. +|..+.+. ++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 467888888777655432 468999999999999999999998843 44444332 23222
Q ss_pred eccccccchHHHHHhhhcc---CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC-------C-CcceEEE
Q 007053 368 WFGESEANVREIFDKARQS---APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------S-AKKTVFI 436 (620)
Q Consensus 368 ~~g~se~~i~~if~~A~~~---~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~-------~-~~~~viV 436 (620)
+.+.... -...|..+... .++|||||||+.+. ..+.+.|+..|+.. . .....++
T Consensus 88 ~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 88 LSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred ccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 2211111 12233333322 46799999998753 34566677766421 1 1112245
Q ss_pred EccCCCCCC---CcccccCCCCCCceeeeeCCCh-hHHHHHHHHhh
Q 007053 437 IGATNRPDI---IDPALLRPGRLDQLIYIPLPDE-ESRLQIFKACL 478 (620)
Q Consensus 437 IatTn~~~~---Ld~al~rpgRf~~~i~~~~P~~-~eR~~Il~~~l 478 (620)
|+|||.+.. +.+++++ ||...+.+++|+. +++..|++.+.
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 667775322 3358887 9998999999998 77899998765
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=7.2e-14 Score=158.02 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=102.8
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee----ecCcceeeeec
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS----VKGPELLTMWF 369 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~----i~~~~l~~~~~ 369 (620)
..|.|++.+++.+.-.+.... +..+....+....++||+||||||||+||+++|+.++..++. .++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 357899998887754443211 000111122334489999999999999999999998765443 33444443322
Q ss_pred cccc----cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC-----------CcceE
Q 007053 370 GESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTV 434 (620)
Q Consensus 370 g~se----~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~-----------~~~~v 434 (620)
.... ......+..| ..+||||||||.+.+ ...+.|+..|+... ...++
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 1110 0011122233 236999999998742 24455666665321 12357
Q ss_pred EEEccCCCCC-------------CCcccccCCCCCCc-eeeeeCCChhHHHHHHHHhhcc
Q 007053 435 FIIGATNRPD-------------IIDPALLRPGRLDQ-LIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 435 iVIatTn~~~-------------~Ld~al~rpgRf~~-~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
.||+|||++. .|++++++ |||. .+..+.|+.+ ...|.++.+..
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 8999999886 89999998 9985 4555677777 77888776643
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.4e-13 Score=142.39 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=120.9
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~ 363 (620)
.+..|+++.|.+..++.|...+.. + ..+ ++||+||||+|||++|+++++.+ +.+++.+++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 345788999999999999988763 1 123 39999999999999999999986 45677777765
Q ss_pred eeeeeccccccchHHHHHhhh-------ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEE
Q 007053 364 LLTMWFGESEANVREIFDKAR-------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 436 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~-------~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viV 436 (620)
.. ....+++++.... ...+.+|+|||+|.+... ..+.|+..++.. ..++++
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~~--~~~~~~ 140 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQALRRTMELY--SNSTRF 140 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTTHHHHHHT--TTTEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHHHHHHhcc--CCCceE
Confidence 32 1223344443332 234789999999997532 234455555533 234566
Q ss_pred EccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCC
Q 007053 437 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 498 (620)
Q Consensus 437 IatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G 498 (620)
|.+||.+..+.+.+.+ |+. .+.|++|+.+++.++++.+++...+. .+..+..+++.+.|
T Consensus 141 il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 200 (323)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred EEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6677888889999987 775 89999999999999999887543322 12235677777754
No 77
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=4.3e-13 Score=141.97 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=130.8
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhcee--eecC------
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI--SVKG------ 361 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i--~i~~------ 361 (620)
+..|+++.|.+..++.|...+.. + ..++.+||+||+|||||++|+++++.+..... ...|
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 44788999999999999888753 1 23457899999999999999999998754211 0011
Q ss_pred --------cceeeeec--cccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC
Q 007053 362 --------PELLTMWF--GESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 427 (620)
Q Consensus 362 --------~~l~~~~~--g~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~ 427 (620)
+++..... ......++.++..+.. ..+.||+|||+|.+.. ...+.|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~Ll~~le~ 145 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEE 145 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHHHHHHHS
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHHHHHHhc
Confidence 11111110 0123356777766543 3468999999998742 235667777764
Q ss_pred CCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCC-CcChHHHHhhcCCCCCCcHHH
Q 007053 428 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITE 506 (620)
Q Consensus 428 ~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~-dv~l~~LA~~t~G~sg~DL~~ 506 (620)
. ...+++|++|+.+..+.+.+++ |+ ..+.|++|+.++..++++.+++...+.- +..+..+++.+.| +.+++.+
T Consensus 146 ~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~ 219 (373)
T 1jr3_A 146 P--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALS 219 (373)
T ss_dssp C--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHH
T ss_pred C--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHH
Confidence 3 3356777778888888888887 76 5899999999999999998886543321 2235677777765 4666667
Q ss_pred HHHHHHH
Q 007053 507 ICQRACK 513 (620)
Q Consensus 507 l~~~A~~ 513 (620)
+++.+..
T Consensus 220 ~l~~~~~ 226 (373)
T 1jr3_A 220 LTDQAIA 226 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 78
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.7e-13 Score=142.16 Aligned_cols=189 Identities=22% Similarity=0.293 Sum_probs=124.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-----hceeeecCcc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~~~ 363 (620)
.+.+|+++.|.+.+++.|..++.. + ...++||+||||||||++|+++++.+. ..++.+++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 445789999999999999988763 1 223599999999999999999999863 3467777654
Q ss_pred eeeeeccccccchHHHHHhh--hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 364 LLTMWFGESEANVREIFDKA--RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A--~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
..+. ......+....... ....+.+|+|||+|.+.. ...+.|+..++.. ...+.+|++||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeC
Confidence 3210 00111112211111 114578999999998753 2345566666543 23466777888
Q ss_pred CCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhcCCCCCCcHHHHHHHHH
Q 007053 442 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 512 (620)
Q Consensus 442 ~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~A~ 512 (620)
.++.+.+++.+ |+. .+.|++|+.++...+++.+++...+. .+..+..++..+.| +.+.+.++++.+.
T Consensus 149 ~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 149 YSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp CGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 88889999887 776 88999999999999999887654432 12235667776654 3333444444433
No 79
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.42 E-value=1e-13 Score=140.58 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=108.2
Q ss_pred cccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcceeee
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM 367 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~~~ 367 (620)
.+|+++.|.+...+.+.+.+.... ..+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 468889999988888877766422 2346799999999999999999999874 68999998876321
Q ss_pred -----ecccccc-------chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC-------
Q 007053 368 -----WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM------- 428 (620)
Q Consensus 368 -----~~g~se~-------~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~------- 428 (620)
.+|.... .....|..+ ..++|||||++.+... +...|+..++..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM--------------VQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH--------------HHHHHHHHHHHCEECCCCC
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH--------------HHHHHHHHHHhCCeecCCC
Confidence 1111100 011223333 3469999999997532 334455544421
Q ss_pred --CCcceEEEEccCCCC-------CCCcccccCCCCCCceeeeeCCChhHH----HHHHHHhhcc----CCCC--CCcCh
Q 007053 429 --SAKKTVFIIGATNRP-------DIIDPALLRPGRLDQLIYIPLPDEESR----LQIFKACLRK----SPVS--KDVDL 489 (620)
Q Consensus 429 --~~~~~viVIatTn~~-------~~Ld~al~rpgRf~~~i~~~~P~~~eR----~~Il~~~l~~----~~l~--~dv~l 489 (620)
....++.+|+|||.+ ..+.+.+.+ ||. .+.+..|...+| ..+++.+++. .... ..++-
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~ 211 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTE 211 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCH
Confidence 112357788888874 235667766 775 245556655554 3444444422 2221 12333
Q ss_pred HHHHhh-cCCCC--CCcHHHHHHHHHHH
Q 007053 490 RALAKY-TQGFS--GADITEICQRACKY 514 (620)
Q Consensus 490 ~~LA~~-t~G~s--g~DL~~l~~~A~~~ 514 (620)
+.+... ...|. .++|.++++++...
T Consensus 212 ~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 212 RARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 333322 13343 35777777766543
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.39 E-value=2.2e-13 Score=141.61 Aligned_cols=191 Identities=21% Similarity=0.285 Sum_probs=113.5
Q ss_pred ccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceee----
Q 007053 294 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT---- 366 (620)
Q Consensus 294 ~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~---- 366 (620)
+++.|.+...+++.+.+.... ....+|||+||||||||++|+++++.+ +.+|+.++|+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 357788888888877766422 235679999999999999999999965 57899999987642
Q ss_pred -eeccccc-------cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC---------
Q 007053 367 -MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------- 429 (620)
Q Consensus 367 -~~~g~se-------~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------- 429 (620)
..+|... ......|..+. .++||||||+.+... ....|+..++...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL--------------MQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH--------------HHHHHHHHHHSSBCCBTTBCCC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH--------------HHHHHHHHHhcCEeeecCCccc
Confidence 1122211 11233455543 359999999998532 3444555554321
Q ss_pred CcceEEEEccCCCC-------CCCcccccCCCCCCceeeeeCCChhHH----HHHHHHhhccC----CC-CCCcC---hH
Q 007053 430 AKKTVFIIGATNRP-------DIIDPALLRPGRLDQLIYIPLPDEESR----LQIFKACLRKS----PV-SKDVD---LR 490 (620)
Q Consensus 430 ~~~~viVIatTn~~-------~~Ld~al~rpgRf~~~i~~~~P~~~eR----~~Il~~~l~~~----~l-~~dv~---l~ 490 (620)
...++.||+|||.. ..+++.|.. ||. .+.+..|...+| ..+++.+++.. .. ...++ +.
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~ 210 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMD 210 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHH
Confidence 12357888899875 123344444 554 455555655544 44666655321 11 11222 33
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHHHH
Q 007053 491 ALAKYTQGFSGADITEICQRACKYA 515 (620)
Q Consensus 491 ~LA~~t~G~sg~DL~~l~~~A~~~A 515 (620)
.|......-+.++|.+++++|...+
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 4444432223467777777776544
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=1.1e-12 Score=138.29 Aligned_cols=183 Identities=15% Similarity=0.227 Sum_probs=117.3
Q ss_pred ccccccccchHHHHHHHHHhh-cCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc-------------
Q 007053 290 NVNWEDIGGLENVKRELQETV-QYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 355 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l-~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~------------- 355 (620)
+.+|+++.|.+.+.+.|+.++ .. + ..+. ++|+||+|||||++++++++++..+
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 457899999999999998877 32 1 1234 9999999999999999999964211
Q ss_pred ----------------eeeecCcceeeeeccccc-cchHHHHHhhh--------------ccCCeeeeeccchhHHhhcC
Q 007053 356 ----------------FISVKGPELLTMWFGESE-ANVREIFDKAR--------------QSAPCVLFFDELDSIATQRG 404 (620)
Q Consensus 356 ----------------~i~i~~~~l~~~~~g~se-~~i~~if~~A~--------------~~~p~IL~iDEiD~l~~~r~ 404 (620)
++.+++.+ .+... ..+++.+..+. ...|.||+|||++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~--- 148 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSD-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK--- 148 (354)
T ss_dssp ---------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH---
T ss_pred ccccccceeeeecccceEEecHhh-----cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH---
Confidence 11111111 01001 02444444332 22577999999988532
Q ss_pred CCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCC
Q 007053 405 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS 484 (620)
Q Consensus 405 ~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~ 484 (620)
...+.|+..++.... +..+|.+||.++.+.+.+++ |+ ..+.|++|+.+++.++++..++...+.
T Consensus 149 -----------~~~~~L~~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 -----------DAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -----------HHHHHHHHHHHHSTT--TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred -----------HHHHHHHHHHHhhcC--CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 123455555554332 45677778888889999988 88 689999999999999999988654432
Q ss_pred -C-CcChHHHHhhcCCCCCCcHHHHHHH
Q 007053 485 -K-DVDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 485 -~-dv~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
. +..+..+++.+.| +.+++.++++.
T Consensus 213 ~~~~~~l~~i~~~~~G-~~r~a~~~l~~ 239 (354)
T 1sxj_E 213 LETKDILKRIAQASNG-NLRVSLLMLES 239 (354)
T ss_dssp ECCSHHHHHHHHHHTT-CHHHHHHHHTH
T ss_pred CCcHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 2 3346777777654 23333344433
No 82
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.30 E-value=8.8e-13 Score=110.30 Aligned_cols=82 Identities=30% Similarity=0.415 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccch
Q 007053 466 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEV 545 (620)
Q Consensus 466 ~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (620)
+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++. .
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------~ 56 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------R 56 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-------------------------C
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------------------c
Confidence 678999999999999999889999999999999999999999999999998763 2
Q ss_pred hhhhHHHHHHHHHHHhhcCChHHHHHHH
Q 007053 546 AEIKAVHFEESMKYARRSVSDADIRKYQ 573 (620)
Q Consensus 546 ~~vt~~df~~Al~~~~psvs~~di~~~e 573 (620)
..|+.+||..|+++++|+++ +++..|+
T Consensus 57 ~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 57 YIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp SSBCHHHHHHHHHHHCC-----------
T ss_pred CCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 36999999999999999999 8877764
No 83
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=7.1e-12 Score=131.85 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=107.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-----hceeeecCcc
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 363 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-----~~~i~i~~~~ 363 (620)
.+..|+++.|.+.+++.|...+.. | ..+ ++||+||||||||++|+++|+.+. ..++.+++++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 345788999999999999887763 2 122 399999999999999999999863 3456666654
Q ss_pred eeeeeccccccchHHHHHhhh------ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEE
Q 007053 364 LLTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 437 (620)
Q Consensus 364 l~~~~~g~se~~i~~if~~A~------~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVI 437 (620)
..+ ...+++.+.... ...+.|++|||+|.+... ..+.|+..++... ....+|
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~~~--~~~~~i 144 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQNALRRVIERYT--KNTRFC 144 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHHHHHHHHHHTT--TTEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHhcCC--CCeEEE
Confidence 211 112222222211 123689999999987532 3455666665433 234556
Q ss_pred ccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhcc
Q 007053 438 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 438 atTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
.+||.+..+.+++++ |+. .+.|++++.++..++++..++.
T Consensus 145 l~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 145 VLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred EEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHH
Confidence 677888899999988 876 7889999999999999888743
No 84
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.28 E-value=2.9e-12 Score=107.98 Aligned_cols=78 Identities=31% Similarity=0.525 Sum_probs=71.7
Q ss_pred eeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 007053 461 YIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEED 540 (620)
Q Consensus 461 ~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~ 540 (620)
.-.+|+.++|.+||+.++++.++..++++..||+.|.||||+||.+||++|++.|+++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 45689999999999999999999899999999999999999999999999999999874
Q ss_pred cccchhhhhHHHHHHHHHHHhhc
Q 007053 541 VEDEVAEIKAVHFEESMKYARRS 563 (620)
Q Consensus 541 ~~~~~~~vt~~df~~Al~~~~ps 563 (620)
...|+.+||..|+++++|.
T Consensus 66 ----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ----CSEECHHHHHHHHHHHHCC
T ss_pred ----CCCCCHHHHHHHHHHHccC
Confidence 2369999999999999875
No 85
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.27 E-value=4.6e-12 Score=107.21 Aligned_cols=85 Identities=18% Similarity=0.362 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccch
Q 007053 466 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEV 545 (620)
Q Consensus 466 ~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (620)
|.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++. .
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------~ 56 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------R 56 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-------------------------C
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-------------------------c
Confidence 678999999999999999999999999999999999999999999999999874 2
Q ss_pred hhhhHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 007053 546 AEIKAVHFEESMKYARRSVSD-ADIRKYQAF 575 (620)
Q Consensus 546 ~~vt~~df~~Al~~~~psvs~-~di~~~e~~ 575 (620)
..|+.+||..|++++.+++.. .....|..|
T Consensus 57 ~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w 87 (88)
T 3vlf_B 57 KVATEKDFLKAVDKVISGYKKFSSTSRYMQY 87 (88)
T ss_dssp SSBCHHHHHHHHHHHTC--------------
T ss_pred ccCCHHHHHHHHHHHhcCcccccchhHHhcc
Confidence 359999999999999988754 446666555
No 86
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.27 E-value=5.6e-13 Score=122.82 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=77.9
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeecccccc
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA 374 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~ 374 (620)
++.|.+..++++++.+.... ....+|||+||||||||++|+++++.+. +|+.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 46778888888887776421 2356799999999999999999999888 99999998764332
Q ss_pred chHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 375 NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 375 ~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
....|..+. .++|||||+|.+... ....|+..++... ..++.+|+|||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRN--------------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHH--------------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHH--------------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 466677665 359999999998542 2333444443221 2346777888754
No 87
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.26 E-value=3.3e-12 Score=117.86 Aligned_cols=112 Identities=14% Similarity=0.225 Sum_probs=77.8
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccc
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE 371 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~ 371 (620)
++.|.+...+++.+.+.... ....+|||+||||||||++|+++++.+ +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 46677777777777665421 235679999999999999999999987 67899 998875432
Q ss_pred cccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCC
Q 007053 372 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 443 (620)
Q Consensus 372 se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~ 443 (620)
......|..+.. ++|||||+|.+... ....|+..|... ..++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l~~~--------------~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHLTRE--------------QQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGSCHH--------------HHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHCCHH--------------HHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 345666776643 59999999998632 334455555332 2346677888864
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.25 E-value=7.2e-12 Score=134.17 Aligned_cols=208 Identities=13% Similarity=0.138 Sum_probs=127.7
Q ss_pred ccccccchHHHHHHHHHhh-cCcCCChhhhhhcCCCCCceeee--ecCCCChhHHHHHHHHhhhh---------hceeee
Q 007053 292 NWEDIGGLENVKRELQETV-QYPVEHPEKFEKFGMSPSKGVLF--YGPPGCGKTLLAKAIANECQ---------ANFISV 359 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l-~~pl~~~~~~~~~g~~~~~~vLL--~GppGtGKT~LAralA~~l~---------~~~i~i 359 (620)
..+.+.|.+...++|.+.+ ......+ -..+..++| +||||+|||+|++++++.+. ..++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477899999999988887 4321110 023567999 99999999999999998763 456777
Q ss_pred cCcceee------e---ecc-------ccccc-hHHHHHhhh-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHH
Q 007053 360 KGPELLT------M---WFG-------ESEAN-VREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 421 (620)
Q Consensus 360 ~~~~l~~------~---~~g-------~se~~-i~~if~~A~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~L 421 (620)
+|....+ . ..+ .+... ...+..... ...|.+|+|||++.+..... .....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHH
Confidence 7643211 0 001 11111 222222222 24578999999999873210 113455555
Q ss_pred hhhhcCCC-Cc--ceEEEEccCCCCC---CCc---ccccCCCCCCceeeeeCCChhHHHHHHHHhhccCC---CCCCcCh
Q 007053 422 LTEMDGMS-AK--KTVFIIGATNRPD---IID---PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP---VSKDVDL 489 (620)
Q Consensus 422 L~~ld~~~-~~--~~viVIatTn~~~---~Ld---~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~---l~~dv~l 489 (620)
+..+.... .. .++.+|++|+.++ .++ +.+.+ +|...+.+++++.++..++|+..+.... ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 55554332 12 5677888887664 233 55555 5655699999999999999987664211 1122235
Q ss_pred HHHHhhcC------CCCCCcHHHHHHHHHHHHHH
Q 007053 490 RALAKYTQ------GFSGADITEICQRACKYAIR 517 (620)
Q Consensus 490 ~~LA~~t~------G~sg~DL~~l~~~A~~~A~~ 517 (620)
..+++.+. |. ++.+..+|+.|...|..
T Consensus 243 ~~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 243 ELISDVYGEDKGGDGS-ARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHHHHHHCGGGTSCCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCc-HHHHHHHHHHHHHHHHH
Confidence 67777777 53 55677788877766543
No 89
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.24 E-value=7.1e-12 Score=103.49 Aligned_cols=75 Identities=33% Similarity=0.595 Sum_probs=69.2
Q ss_pred eCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc
Q 007053 463 PLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVE 542 (620)
Q Consensus 463 ~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~ 542 (620)
|+|+.++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 689999999999999999999889999999999999999999999999999999863
Q ss_pred cchhhhhHHHHHHHHHHHhh
Q 007053 543 DEVAEIKAVHFEESMKYARR 562 (620)
Q Consensus 543 ~~~~~vt~~df~~Al~~~~p 562 (620)
...|+.+||..|++++..
T Consensus 58 --~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 --RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --CSEECHHHHHHHHHHHHC
T ss_pred --CCCCCHHHHHHHHHHHHh
Confidence 236999999999998864
No 90
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.22 E-value=5.3e-11 Score=125.08 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceee----------------ecCc
Q 007053 299 LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS----------------VKGP 362 (620)
Q Consensus 299 l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~----------------i~~~ 362 (620)
+++..+.|...+.. -..++.+||+||||+|||++|+++|+.+.+.... -+.+
T Consensus 7 ~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 56666677666553 1346679999999999999999999987543210 0012
Q ss_pred ceeeeecc-----ccccchHHHHHhhhc----cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcce
Q 007053 363 ELLTMWFG-----ESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 433 (620)
Q Consensus 363 ~l~~~~~g-----~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~ 433 (620)
++..-... ..-..++++++.+.. ..+.|++|||+|.+.. ...+.|+..++.. ..+
T Consensus 75 d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEep--~~~ 138 (334)
T 1a5t_A 75 DYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEEP--PAE 138 (334)
T ss_dssp TEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTSC--CTT
T ss_pred CEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcCC--CCC
Confidence 22211110 112346677666543 3468999999999752 2456788888753 345
Q ss_pred EEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCC
Q 007053 434 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 498 (620)
Q Consensus 434 viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G 498 (620)
+++|.+||.++.+.+.+++ |+. .+.|++|+.++..++++... .+ .+..+..++..+.|
T Consensus 139 ~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG 196 (334)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT
T ss_pred eEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC
Confidence 6777778888999999998 875 79999999999999998775 22 22235566666654
No 91
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.21 E-value=8.6e-12 Score=141.49 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=44.1
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
..++..|+++.|.+.+++.+...+.. ...++|+||||||||+||+++|..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 44667899999999999888777653 35899999999999999999999874
No 92
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=99.20 E-value=2.7e-11 Score=100.48 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCcceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCCceeecCCceEeeCCC
Q 007053 114 KYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGE 192 (620)
Q Consensus 114 ~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~~~~~~~~t~~~~~~~ 192 (620)
-.|++|+|+|.+ +++ +.++ +..|||++|. +|||.+||.|.+...|+.+.|+|++|.|+ +|+|+++|+|.++++
T Consensus 10 ~~A~kVvLAP~~-~i~-~~~~-~~~~lk~~L~--grPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~e 82 (83)
T 2jv2_A 10 VIMSELKLKPLP-KVE-LPPD-FVDVIRIKLQ--GKTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVTH 82 (83)
T ss_dssp CCCCEEEEEESS-SCC-CCHH-HHHHHHHHHT--TSEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECCC
T ss_pred eEEEEEEEcCCC-cee-cCcc-HHHHHHHHHC--CCCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEec
Confidence 469999999994 455 5444 4799999997 69999999999988889999999999999 999999999999643
No 93
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=7.4e-11 Score=122.58 Aligned_cols=142 Identities=11% Similarity=0.151 Sum_probs=100.7
Q ss_pred chHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh------hceeeecCcceeeeeccc
Q 007053 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPELLTMWFGE 371 (620)
Q Consensus 298 Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~------~~~i~i~~~~l~~~~~g~ 371 (620)
|.+++.+.|+..+.. +. .+.+|||||||+|||++|+++|+.++ .+++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------CC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 456677777777664 22 46799999999999999999998742 34555543310 01
Q ss_pred cccchHHHHHhhhcc----CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc
Q 007053 372 SEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 447 (620)
Q Consensus 372 se~~i~~if~~A~~~----~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld 447 (620)
.-..++++++.+... ...|+||||+|.+.. ...+.|+..|+... ..+++|.+|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~--------------~a~naLLk~LEep~--~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ--------------QAANAFLKALEEPP--EYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--------------HHHHHTHHHHHSCC--TTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH--------------HHHHHHHHHHhCCC--CCeEEEEEECChHhCh
Confidence 223467777777543 247999999999752 24677888887543 3455666667788999
Q ss_pred ccccCCCCCCceeeeeCCChhHHHHHHHHhh
Q 007053 448 PALLRPGRLDQLIYIPLPDEESRLQIFKACL 478 (620)
Q Consensus 448 ~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l 478 (620)
|++++ | .+.|++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99998 7 89999999999999998876
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.07 E-value=1.8e-11 Score=102.06 Aligned_cols=80 Identities=26% Similarity=0.273 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhh
Q 007053 468 ESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAE 547 (620)
Q Consensus 468 ~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (620)
++|.+||+.++++.++..++++..||+.|+||||+||.++|++|++.|+++. ...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-------------------------~~~ 55 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-------------------------RYV 55 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-------------------------CSE
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------------------cCC
Confidence 4799999999999998889999999999999999999999999999999863 235
Q ss_pred hhHHHHHHHHHHH-hhcCChHHHHHH
Q 007053 548 IKAVHFEESMKYA-RRSVSDADIRKY 572 (620)
Q Consensus 548 vt~~df~~Al~~~-~psvs~~di~~~ 572 (620)
|+.+||..|++++ .|+.+.+++..|
T Consensus 56 i~~~df~~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 56 ILQSDLEEAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp ECHHHHHHHHHTTCC-----------
T ss_pred cCHHHHHHHHHHHHcCcCChHHHHhh
Confidence 9999999999998 588888777766
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.00 E-value=1.3e-10 Score=144.49 Aligned_cols=213 Identities=15% Similarity=0.225 Sum_probs=134.5
Q ss_pred ccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeecccccccccc
Q 007053 218 KDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIG 297 (620)
Q Consensus 218 ~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v~~~di~ 297 (620)
...++|.|++|.+ |+|+++.+|++. +.+ .+++..++.+.+.++ .++....|+.+++...++|+++|++--
T Consensus 612 g~w~~~~~~~l~q-g~e~~~~~l~~~-p~~---~~ei~~~i~~~~~Vt-----~a~~~~~ps~L~e~~~~~~~v~~~~~~ 681 (2050)
T 3cmu_A 612 GAWYSYKGEKIGQ-GKANATAWLKDN-PET---AKEIEKKVRELLLSN-----PNSTTGSTGSMGHTTGAMSAIDENKQK 681 (2050)
T ss_dssp TTEEEETTEEEEE-SHHHHHHHHTTC-HHH---HHHHHHHHHHHHCSS-----CCC----------------CCSTTHHH
T ss_pred CceecccCCchHh-hHHHHHHHHHhC-hHH---HHHHHHHHHHhcccc-----hhcccCCHHHHHhhhccccCCcHHHHH
Confidence 3477899999988 999999999875 322 235666667777777 678888999999999999999998645
Q ss_pred chHHHHHHHHH-----------------hhcCcCCChhhhhhc---CCCCCceeeeecCCCChhHHHHHHHHhhhh---h
Q 007053 298 GLENVKRELQE-----------------TVQYPVEHPEKFEKF---GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---A 354 (620)
Q Consensus 298 Gl~~~k~~L~e-----------------~l~~pl~~~~~~~~~---g~~~~~~vLL~GppGtGKT~LAralA~~l~---~ 354 (620)
.+..+.+.+.. ...++...+++.+.+ |+.+...++|+|+||+|||+||..+|..+. .
T Consensus 682 ~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~ 761 (2050)
T 3cmu_A 682 ALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (2050)
T ss_dssp HHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 55555555532 223444556666666 488889999999999999999999998774 3
Q ss_pred ceeeecCcceeeee----cc--------ccccchHHHHHhhhc----cCCeeeeeccchhHHh-hc--CCCCCCCC-Cch
Q 007053 355 NFISVKGPELLTMW----FG--------ESEANVREIFDKARQ----SAPCVLFFDELDSIAT-QR--GSSVGDAG-GAA 414 (620)
Q Consensus 355 ~~i~i~~~~l~~~~----~g--------~se~~i~~if~~A~~----~~p~IL~iDEiD~l~~-~r--~~~~~~~~-~~~ 414 (620)
+++++++.+....+ +| ..+..+.+++..++. ..|++||||.++.+.. .. +.. ++.+ ...
T Consensus 762 ~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~-Gs~~q~La 840 (2050)
T 3cmu_A 762 TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI-GDSHMGLA 840 (2050)
T ss_dssp CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCT-TCCCTTHH
T ss_pred cEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCC-CchhhHHH
Confidence 58888876654432 22 233456677766655 6789999999999875 22 111 1111 234
Q ss_pred hHHHHHHhhhhcCCCCcceEEEEccCC
Q 007053 415 DRVLNQLLTEMDGMSAKKTVFIIGATN 441 (620)
Q Consensus 415 ~rvl~~LL~~ld~~~~~~~viVIatTn 441 (620)
.|.+++++..|..+....++.||+++.
T Consensus 841 ~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 841 ARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 566788777777665555666666654
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.95 E-value=7.2e-10 Score=141.87 Aligned_cols=140 Identities=22% Similarity=0.433 Sum_probs=94.1
Q ss_pred CCCceeeeecCCCChhHHHH-HHHHhhhhhceeeecCcceeeeeccccccchHHHHHhh---------------hccCCe
Q 007053 326 SPSKGVLFYGPPGCGKTLLA-KAIANECQANFISVKGPELLTMWFGESEANVREIFDKA---------------RQSAPC 389 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LA-ralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A---------------~~~~p~ 389 (620)
...+++||+||||||||++| ++++...+..++.++++...+ ...+...++.. ....++
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 34689999999999999999 455555566777777655431 12233333221 123457
Q ss_pred eeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC---C-----CcceEEEEccCCCCC-----CCcccccCCCCC
Q 007053 390 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM---S-----AKKTVFIIGATNRPD-----IIDPALLRPGRL 456 (620)
Q Consensus 390 IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~---~-----~~~~viVIatTn~~~-----~Ld~al~rpgRf 456 (620)
||||||++.....+- ......+++.+++.. .+. . ...++.+|||+|++. .|+++++| ||
T Consensus 1339 VlFiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf 1410 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA 1410 (2695)
T ss_dssp EEEEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE
T ss_pred EEEeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee
Confidence 999999986332211 012345566666542 111 1 113589999999994 79999999 88
Q ss_pred CceeeeeCCChhHHHHHHHHhhcc
Q 007053 457 DQLIYIPLPDEESRLQIFKACLRK 480 (620)
Q Consensus 457 ~~~i~~~~P~~~eR~~Il~~~l~~ 480 (620)
.+++++.|+.+++..|+..+++.
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999988754
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.81 E-value=1.2e-09 Score=103.78 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=58.5
Q ss_pred ccccccccc----hHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhh----hhceeeecC
Q 007053 290 NVNWEDIGG----LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKG 361 (620)
Q Consensus 290 ~v~~~di~G----l~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~ 361 (620)
+.+|+++.+ ...+.+.+++++.. +....+.+++|+||+|||||+|++++++.+ +..++.+++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 345666654 44455555554442 334457889999999999999999999887 445666666
Q ss_pred cceeeeeccccc-cchHHHHHhhhccCCeeeeeccchh
Q 007053 362 PELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDS 398 (620)
Q Consensus 362 ~~l~~~~~g~se-~~i~~if~~A~~~~p~IL~iDEiD~ 398 (620)
.++...+..... .....++... ..|.+|+|||++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred HHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 555432211000 0011222222 2567999999975
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.81 E-value=3.7e-08 Score=102.53 Aligned_cols=188 Identities=15% Similarity=0.191 Sum_probs=113.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce----
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL---- 364 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l---- 364 (620)
|......+.|.+...+.|.+ +.. +.++|+||+|+|||+|++.+++..+..++.+++...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 44455678899988888887 542 479999999999999999999988666666665432
Q ss_pred -ee---------------------------ee-----cc---c------cccchHHHHHhhhcc--CCeeeeeccchhHH
Q 007053 365 -LT---------------------------MW-----FG---E------SEANVREIFDKARQS--APCVLFFDELDSIA 400 (620)
Q Consensus 365 -~~---------------------------~~-----~g---~------se~~i~~if~~A~~~--~p~IL~iDEiD~l~ 400 (620)
.+ .. .+ . ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 00 00 00 0 112345555444332 38899999999986
Q ss_pred hhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCc---------ccccCCCCCCceeeeeCCChhHHH
Q 007053 401 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---------PALLRPGRLDQLIYIPLPDEESRL 471 (620)
Q Consensus 401 ~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld---------~al~rpgRf~~~i~~~~P~~~eR~ 471 (620)
.... ......+..+.... .++.+|.|++....+. ..+ .+|+...+.+++++.++..
T Consensus 151 ~~~~-------~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 151 KLRG-------VNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GCTT-------CCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHH
T ss_pred ccCc-------hhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHH
Confidence 4100 11223333333321 1344444444321111 112 2466678999999999999
Q ss_pred HHHHHhhccCCCCCCcChHHHHhhcCCCCCCcHHHHHHH
Q 007053 472 QIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 472 ~Il~~~l~~~~l~~dv~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
++++..+.......+ +...+...+.|+. .-+..++..
T Consensus 216 ~~l~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 216 EFLRRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHHH
Confidence 999887653322222 2378888898874 446555544
No 99
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.80 E-value=2.1e-09 Score=118.72 Aligned_cols=90 Identities=70% Similarity=1.050 Sum_probs=70.9
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccccceeecccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNV 291 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~~~p~v 291 (620)
.+.++|..|+||+|+||.+||++|++.++++....++.+...++.+.+..+.|+++||..|++.+.|+++++...++|++
T Consensus 395 ~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v 474 (489)
T 3hu3_A 395 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474 (489)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC-----
T ss_pred hHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCC
Confidence 46779999999999999999999999999999999888888888888899999999999999999999999999999999
Q ss_pred ccccccchHH
Q 007053 292 NWEDIGGLEN 301 (620)
Q Consensus 292 ~~~di~Gl~~ 301 (620)
+|+||||...
T Consensus 475 ~W~dig~~~~ 484 (489)
T 3hu3_A 475 TWEDIGGRSH 484 (489)
T ss_dssp ----------
T ss_pred CHHHcCCCcc
Confidence 9999999764
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.78 E-value=1.1e-08 Score=109.69 Aligned_cols=190 Identities=21% Similarity=0.331 Sum_probs=108.3
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcceee-----
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT----- 366 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~~----- 366 (620)
.+.|.....+++.+.+.... .....+||+|++||||+++|++++..+. .+|+.++|..+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 45555555556555544311 2245689999999999999999998764 6899999987632
Q ss_pred eeccccc-------cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcC--------CCC-
Q 007053 367 MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG--------MSA- 430 (620)
Q Consensus 367 ~~~g~se-------~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~--------~~~- 430 (620)
..+|... ......|+.|.. .+||||||+.+... +...|+..++. ...
T Consensus 207 elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLE--------------AQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHH--------------HHHHHHHHHHHSEECCBTCCSBE
T ss_pred HhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 1222211 112345666654 49999999998642 33334444331 111
Q ss_pred cceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChhHHH----HHHHHhhcc----CCCC-CCcChHHHHh
Q 007053 431 KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESRL----QIFKACLRK----SPVS-KDVDLRALAK 494 (620)
Q Consensus 431 ~~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~eR~----~Il~~~l~~----~~l~-~dv~l~~LA~ 494 (620)
..++.||+|||.. +.. +...|+|.. .+.+..|...+|. .+++.+++. .... ..++-+.+..
T Consensus 270 ~~~~rii~at~~~--l~~-~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 270 EVNVRILAATNRN--IKE-LVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp ECCCEEEEEESSC--HHH-HHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eccEEEEEeCCCC--HHH-HHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 1257889999863 222 222345532 3456667766664 344544432 2211 1233344433
Q ss_pred hc-CCCCC--CcHHHHHHHHHHHH
Q 007053 495 YT-QGFSG--ADITEICQRACKYA 515 (620)
Q Consensus 495 ~t-~G~sg--~DL~~l~~~A~~~A 515 (620)
.. ..|.| ++|++++++|+..+
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhC
Confidence 32 45655 58888888877543
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.76 E-value=2.3e-09 Score=111.23 Aligned_cols=122 Identities=22% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecC--cceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG--PELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 401 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~--~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~ 401 (620)
|+.+...++|+||||||||+||.++|...+.++++++. .+.++.+....+..+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 44556678999999999999999999876655444443 33333332333444445555555443 999999999865
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccc
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPAL 450 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al 450 (620)
..... ...+...+.+.+++..|.++....++.+|+++| +...++++
T Consensus 197 ~~~~~--s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGN--TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc--cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43221 001122345566666665544455677788888 55566654
No 102
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.69 E-value=6.1e-09 Score=96.61 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=45.1
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
+...++|+||+|+|||+|+++++..+ |..++++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 35679999999999999999999987 556777777665432 112346799999998754
No 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=9.4e-08 Score=99.30 Aligned_cols=192 Identities=19% Similarity=0.264 Sum_probs=110.8
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee---
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL--- 365 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~--- 365 (620)
|......+.|.+...+.|.+.+.. .+.++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 444556788999999998887652 15799999999999999999998875 4444443210
Q ss_pred ---------e---eec-----------------cc----cccchHHHHHhh----hccCCeeeeeccchhHHhhcCCCCC
Q 007053 366 ---------T---MWF-----------------GE----SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVG 408 (620)
Q Consensus 366 ---------~---~~~-----------------g~----se~~i~~if~~A----~~~~p~IL~iDEiD~l~~~r~~~~~ 408 (620)
. ... +. ....+..++... ....|.+|+|||++.+.....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---- 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---- 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----
Confidence 0 000 00 012233343332 222489999999999863100
Q ss_pred CCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCC---------cccccCCCCCCceeeeeCCChhHHHHHHHHhhc
Q 007053 409 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---------DPALLRPGRLDQLIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 409 ~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~L---------d~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~ 479 (620)
.....++..|...++.. .++.+|.|++....+ ...+. ||+...+.+++.+.++..++++..+.
T Consensus 146 ---~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 146 ---RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp ---TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred ---cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHH
Confidence 01122333333333322 233444443321111 11222 46667899999999999999988765
Q ss_pred cCCCC-CCcChHHHHhhcCCCCCCcHHHHHHH
Q 007053 480 KSPVS-KDVDLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 480 ~~~l~-~dv~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
..... .+..+..+...+.|+. .-+..++..
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 43322 2234667788888864 445555543
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.67 E-value=1e-08 Score=109.11 Aligned_cols=189 Identities=19% Similarity=0.323 Sum_probs=104.2
Q ss_pred cccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhhc--eeeecCcceee-----e
Q 007053 295 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT-----M 367 (620)
Q Consensus 295 di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~--~i~i~~~~l~~-----~ 367 (620)
.+.|......++.+.+.... .....+|++|++||||+++|++++..++.. |+.++|..+-. .
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45666666666655544211 123569999999999999999999877543 99999986531 1
Q ss_pred eccccc-------cchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCC-----CC----c
Q 007053 368 WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----K 431 (620)
Q Consensus 368 ~~g~se-------~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~-----~~----~ 431 (620)
.+|... ..-...|+.|..+ +||||||+.|... +...|+..++.- .. .
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGELDQR--------------VQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGSCHH--------------HHHHHHHHHHHSEECCBTCCCBEE
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhCCHH--------------HHHHHHHHHHhCCcccCCCCccee
Confidence 122111 1123456666544 8999999998643 334445444321 11 1
Q ss_pred ceEEEEccCCCCCCCcccccCCCCCCc-------eeeeeCCChh----HHHHHHHHhhccC----CCC-CCcChHHHHhh
Q 007053 432 KTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEE----SRLQIFKACLRKS----PVS-KDVDLRALAKY 495 (620)
Q Consensus 432 ~~viVIatTn~~~~Ld~al~rpgRf~~-------~i~~~~P~~~----eR~~Il~~~l~~~----~l~-~dv~l~~LA~~ 495 (620)
-.+.+|++||.. +...+ ..|+|.. .+.+..|... +...+++.+++.. ... ..++-+.+...
T Consensus 262 ~~~rii~at~~~--l~~~v-~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 262 VDIRVISATNKN--LEEEI-KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp CCCEEEEEESSC--HHHHH-HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred eeeEEEEecCCC--HHHHH-HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 256788888853 22222 2345543 3344455444 4455666665332 111 12333333332
Q ss_pred c-CCCCC--CcHHHHHHHHHHH
Q 007053 496 T-QGFSG--ADITEICQRACKY 514 (620)
Q Consensus 496 t-~G~sg--~DL~~l~~~A~~~ 514 (620)
. ..|.| ++|++++++|+..
T Consensus 339 ~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 2 23444 6777777766543
No 105
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.66 E-value=7.5e-09 Score=99.99 Aligned_cols=71 Identities=34% Similarity=0.423 Sum_probs=47.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeeeccc-cccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~~g~-se~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
+.+++|+||||||||+||+++++.+ +.+++.++++++...+... ....+..++..... +.+|||||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 3789999999999999999999987 4567777777654332111 11123334443332 3599999997643
No 106
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.61 E-value=1.9e-08 Score=84.87 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=45.1
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALR 282 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r 282 (620)
.++.||+.|+||+||||.+||++|++.|+++... .|+++||..|+.++.++..+
T Consensus 24 dl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~-----------------~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 24 RWELISRLCPNSTGAELRSVCTEAGMFAIRARRK-----------------VATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp CHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS-----------------SBCHHHHHHHHHHHTC----
T ss_pred CHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc-----------------cCCHHHHHHHHHHHhcCccc
Confidence 5789999999999999999999999999997432 48999999999998877543
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.56 E-value=7.2e-08 Score=93.81 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=78.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhh--------hh-hceeeecCcceeeeec----------ccccc--chHHHHHhh--hc
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE--------CQ-ANFISVKGPELLTMWF----------GESEA--NVREIFDKA--RQ 385 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~--------l~-~~~i~i~~~~l~~~~~----------g~se~--~i~~if~~A--~~ 385 (620)
...|++|+||||||++|.+.+.. .| .+++..++.+|...+. ..... ....++.-+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 45899999999999998886433 23 4555556565542221 11111 112233221 22
Q ss_pred cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCC
Q 007053 386 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 465 (620)
Q Consensus 386 ~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P 465 (620)
...+||+|||++.+.+.+... ....+++.. +.... ...+-+|.+|+.+..|+.++++ |++..+++..|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~-----~e~~rll~~----l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAG-----SKIPENVQW----LNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTT-----CCCCHHHHG----GGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCcccc-----chhHHHHHH----HHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 346799999999997554221 112244433 33222 2334556677778999999987 99999999987
Q ss_pred ChhHH
Q 007053 466 DEESR 470 (620)
Q Consensus 466 ~~~eR 470 (620)
....+
T Consensus 154 ~~~~~ 158 (199)
T 2r2a_A 154 KMGMR 158 (199)
T ss_dssp SSCCE
T ss_pred ccCcc
Confidence 65544
No 108
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.56 E-value=1.8e-08 Score=84.56 Aligned_cols=51 Identities=35% Similarity=0.571 Sum_probs=44.8
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPS 279 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps 279 (620)
+++.||+.|.||+||||++||++|++.|+++. ...|+++||..|+.++.|.
T Consensus 34 dl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 34 NLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHHHHCC
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCCHHHHHHHHHHHccC
Confidence 47899999999999999999999999999874 2468999999999887653
No 109
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.54 E-value=1.7e-07 Score=101.51 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=81.3
Q ss_pred ccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHH-Hhhhhhc-eeeecCc---ceeeeecc
Q 007053 296 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI-ANECQAN-FISVKGP---ELLTMWFG 370 (620)
Q Consensus 296 i~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAral-A~~l~~~-~i~i~~~---~l~~~~~g 370 (620)
|.|++.+|..|.-.+...... ....-+|||.|+||| ||+||+++ ++.+... |....++ .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 678998888776555542111 122347999999999 99999999 6654322 2111111 11111000
Q ss_pred cc-ccchHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhc-------CCCCcceEEEEccCCC
Q 007053 371 ES-EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD-------GMSAKKTVFIIGATNR 442 (620)
Q Consensus 371 ~s-e~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld-------~~~~~~~viVIatTn~ 442 (620)
.+ -..-...+..|.. .++|+|||+.+.+ ...+.|+..|+ +..-..++.||||+|.
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~--------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGAPE--------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTCCH--------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhCCH--------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 00 0111223334433 3999999998653 24455555554 2211236889999998
Q ss_pred CC-----------CCcccccCCCCCCceee-eeCCChhH
Q 007053 443 PD-----------IIDPALLRPGRLDQLIY-IPLPDEES 469 (620)
Q Consensus 443 ~~-----------~Ld~al~rpgRf~~~i~-~~~P~~~e 469 (620)
.. .|+++++. |||..+. ++.|+.+.
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred ccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 65 67888888 9985443 45565543
No 110
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.49 E-value=5.2e-08 Score=101.19 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=45.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh----hceeeecCcceeeeecccc-ccchHHHHHhhhccCCeeeeeccchhHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSIA 400 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~----~~~i~i~~~~l~~~~~g~s-e~~i~~if~~A~~~~p~IL~iDEiD~l~ 400 (620)
..+++|+||||||||+||+++|+++. .+++.+++++++..+.... ...+..++.... .+.+|||||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 57899999999999999999998775 5667777766654322111 111112222222 23599999996643
No 111
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.49 E-value=3.3e-08 Score=82.23 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=45.1
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 281 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~ 281 (620)
.++.||+.|+||+||||.++|++|++.|+++.. ..|+++||..|+..+.|+..
T Consensus 24 dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 24 DLEDYVARPDKISGADINSICQESGMLAVRENR-----------------YIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-----------------SSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHHHHHHHccCch
Confidence 478999999999999999999999999998641 36899999999999998853
No 112
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.46 E-value=8.9e-08 Score=102.07 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=76.7
Q ss_pred cCCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHh-
Q 007053 323 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT- 401 (620)
Q Consensus 323 ~g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~- 401 (620)
++++++..++|+||||+|||||+++++..++..++.+..++ ......+..+ ....++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----------~~~~~~lg~~--~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----------DRLNFELGVA--IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----------TTHHHHHGGG--TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----------hhHHHHHHHh--cchhHHHHHHHHHHHHH
Confidence 36778889999999999999999999998776655543322 1111111111 2235789999998764
Q ss_pred hcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeC
Q 007053 402 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 464 (620)
Q Consensus 402 ~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~ 464 (620)
.+....+ .... ....+...+++. +.|+.+||+++.+ +++++|+|++..++..+
T Consensus 232 ~r~l~~~---~~~~-~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSG---QGIN-NLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCC---SHHH-HHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcccc---Ccch-HHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2211100 1110 123445555542 4567789999999 78999999987766644
No 113
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.9e-06 Score=82.05 Aligned_cols=144 Identities=16% Similarity=0.252 Sum_probs=107.6
Q ss_pred CCceEEeChhhHhhhc---ccCCCeEEEeccc-ccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEeecCCCCC
Q 007053 40 DNSVVVLHPDTMEKLQ---FFRGDTILIKGKK-RKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKY 115 (620)
Q Consensus 40 ~~~~~~~~~~~~~~l~---~~~gd~v~i~g~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~ 115 (620)
..+-+.+.|+++.+|- +.-==+-+|+..+ .+.|.|-|.. -..+.|.|.|..-+++|||+..||.|+|+- ..+|.
T Consensus 39 ~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~wmm~~L~l~~gd~V~v~~-~~LPk 116 (190)
T 2yuj_A 39 KGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHWMMQNLLLEEGGLVQVES-VNLQV 116 (190)
T ss_dssp TTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSHHHHHHTCCTTEEEEEEE-ECCCC
T ss_pred CCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEE-EecCCCeEEeCHHHHHhcCCCCCCEEEEEE-eecCC
Confidence 4567889999988763 2222345666643 2356766653 233578999999999999999999999998 69999
Q ss_pred cceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCCce-eecCCceEe
Q 007053 116 GKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYC-VVAPDTEIF 188 (620)
Q Consensus 116 a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~~~-~~~~~t~~~ 188 (620)
|+.|.+.|.+...-.+ .....+|...|+ +.-++++||+|.|...++...|.|+++.|+..| +|..|-++.
T Consensus 117 gt~vklqP~~~~Fl~i--~npKavLE~~Lr-nfstLT~Gd~I~I~~~~~~y~l~V~e~kP~~aV~IidTDl~vD 187 (190)
T 2yuj_A 117 ATYSKFQPQSPDFLDI--TNPKAVLENALR-NFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVD 187 (190)
T ss_dssp CSEEEEEESSHHHHHS--SCHHHHHHHHHT-TCCEECTTCEEEEESSSCEEEEEEEEESSSSSEECSSCCCEEE
T ss_pred CcEEEEEECCcccccc--ccHHHHHHHHHh-cCcccccCCEEEEEeCCEEEEEEEEEEcCCCeEEEEeCCEEEE
Confidence 9999999986543222 234677888887 467899999999999889999999999998644 444444443
No 114
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.43 E-value=1.9e-07 Score=116.32 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=81.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcceee----e------------eccccccchHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT----M------------WFGESEANVREIFDKAR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~~----~------------~~g~se~~i~~if~~A~ 384 (620)
|+.++.+++|+||||||||+||.+++.+.. .....++..+.+. . .....+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 378899999999999999999999988763 3344444443221 1 12234466777788888
Q ss_pred ccCCeeeeeccchhHHhhc---CCCCCCCCC-chhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 385 QSAPCVLFFDELDSIATQR---GSSVGDAGG-AADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r---~~~~~~~~~-~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
..+|++||||+++.+.+.. +.. ++... ...|+++++|..|.+.....+++||++.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~-~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEI-GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCT-TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccc-cccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 8999999999999888643 221 22112 2468889999988877666777777554
No 115
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.42 E-value=9.5e-07 Score=113.51 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV 407 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~ 407 (620)
..++++.||+|||||.+++++|+.+|.+++.++|++-+. ...+..+|..+.... +.++|||++++.+..-
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL--- 714 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL--- 714 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH---
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH---
Confidence 467999999999999999999999999999999987543 345677787766554 6999999998753210
Q ss_pred CCCCCchhHHHHHHhhhhc---------C--CCCcceEEEEccCCC----CCCCcccccCCCCCCceeeeeCCChhHHHH
Q 007053 408 GDAGGAADRVLNQLLTEMD---------G--MSAKKTVFIIGATNR----PDIIDPALLRPGRLDQLIYIPLPDEESRLQ 472 (620)
Q Consensus 408 ~~~~~~~~rvl~~LL~~ld---------~--~~~~~~viVIatTn~----~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~ 472 (620)
+.....+..+...+. | +.-.....|++|.|. ...|++++++ || +.+.+..|+.+...+
T Consensus 715 ----s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 715 ----SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 011111111122221 1 011234567778773 3468889987 77 589999999998888
Q ss_pred HHH
Q 007053 473 IFK 475 (620)
Q Consensus 473 Il~ 475 (620)
|+-
T Consensus 788 i~l 790 (2695)
T 4akg_A 788 MIL 790 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 853
No 116
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.40 E-value=1.8e-07 Score=77.66 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=43.3
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCC
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSN 277 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ 277 (620)
+++.||+.|+||+||||.++|++|++.|+++.. ..|+++||..|+.++.
T Consensus 21 dl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 21 DLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEEAYATQV 69 (82)
T ss_dssp CSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHHHHHHHH
Confidence 467899999999999999999999999998742 3589999999999885
No 117
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.5e-06 Score=81.18 Aligned_cols=145 Identities=17% Similarity=0.251 Sum_probs=108.8
Q ss_pred CceEEeChhhHhhhc---ccCCCeEEEeccc-ccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEeecCCCCCc
Q 007053 41 NSVVVLHPDTMEKLQ---FFRGDTILIKGKK-RKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYG 116 (620)
Q Consensus 41 ~~~~~~~~~~~~~l~---~~~gd~v~i~g~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a 116 (620)
.+-+.|.|+++++|- +.-==+-+|+..+ .+.|.|-|..= ....|.|.|..-+++|||+..||.|+|+- ..+|.|
T Consensus 45 GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlEF-~A~EG~v~lP~wmm~~L~l~~gd~V~i~~-~~LPkg 122 (208)
T 1zc1_A 45 GGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEF-IAEEGRVYLPQWMMETLGIQPGSLLQISS-TDVPLG 122 (208)
T ss_dssp SSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEEE-CCSSCEEEECHHHHHHHTCCTTCEEEEEE-EECCCC
T ss_pred CCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEEE-EcCCCeEEcCHHHHHhcCCCCCCEEEEEE-eEcCCC
Confidence 346889999988864 2222334555533 33577776532 23568899999999999999999999998 689999
Q ss_pred ceEEeeccCCcccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEeCCCC----ceeecCCceEeeC
Q 007053 117 KRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPE----YCVVAPDTEIFCE 190 (620)
Q Consensus 117 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~~p~~----~~~~~~~t~~~~~ 190 (620)
+.|.+.|-+...-.+ ......|...|+ +..++++||+|.|...++...|.|.++.|+. .++|..|-++.+.
T Consensus 123 t~vklqP~~~~Fldi--~npKavLE~~LR-nfstLT~Gd~I~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf~ 197 (208)
T 1zc1_A 123 QFVKLEPQSVDFLDI--SDPKAVLENVLR-NFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFA 197 (208)
T ss_dssp SEEEEECCHHHHHTS--SCHHHHHHHHHH-HCSCEESSSEEEEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEEC
T ss_pred CEEEEeECccccccc--cCHHHHHHHHhh-cCccccCCCEEEEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEec
Confidence 999999975433112 233567777787 4789999999999998999999999999984 5667666666663
No 118
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.31 E-value=2.8e-07 Score=75.69 Aligned_cols=48 Identities=38% Similarity=0.622 Sum_probs=42.4
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccC
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 276 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~ 276 (620)
.++.||+.|.||+||||.++|++|++.|+++. ...|+++||..|+.++
T Consensus 26 dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 26 NLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKV 73 (78)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999873 2368999999999865
No 119
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.25 E-value=6.9e-07 Score=86.84 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=27.0
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
++..+++|||||||||||++|.++|+.+...++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 334467999999999999999999998865443
No 120
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.20 E-value=5.5e-08 Score=119.96 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=55.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcceee----eecc--------ccccchHHHHHhhh----
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT----MWFG--------ESEANVREIFDKAR---- 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~l~~----~~~g--------~se~~i~~if~~A~---- 384 (620)
|+.+...++|+||||+|||+||..+|..+. .++++++..+... ...| ..+..+.+++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 477888999999999999999999988763 3566666554331 1111 12224555665554
Q ss_pred ccCCeeeeeccchhHHh
Q 007053 385 QSAPCVLFFDELDSIAT 401 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~ 401 (620)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 46789999999999874
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.03 E-value=4.1e-06 Score=108.43 Aligned_cols=139 Identities=21% Similarity=0.312 Sum_probs=87.2
Q ss_pred CCceeeeecCCCChhHHHHHHHHh-hhhhceeeecCcceeeeeccccccchHHHHHh---------------hh-ccCCe
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIAN-ECQANFISVKGPELLTMWFGESEANVREIFDK---------------AR-QSAPC 389 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~-~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~---------------A~-~~~p~ 389 (620)
..+++||+||||||||++++.... ..+.+++.++++.-.+ ...+...++. +. .++..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 467899999999999987765444 4466677777765321 1222222221 11 13346
Q ss_pred eeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhh---cCC----CCcceEEEEccCCCC-----CCCcccccCCCCCC
Q 007053 390 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM---DGM----SAKKTVFIIGATNRP-----DIIDPALLRPGRLD 457 (620)
Q Consensus 390 IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~l---d~~----~~~~~viVIatTn~~-----~~Ld~al~rpgRf~ 457 (620)
|+||||++.-.... - + ....-.++.+++..- +.. ....++.+|||+|.| ..|+++++| ||.
T Consensus 1377 VlFiDDiNmp~~D~--y-G--tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK--Y-G--TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEEETTTTCCCCCT--T-S--CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEEecccCCCCccc--c-c--cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 99999998622111 0 0 112344555555431 110 112357889999987 359999998 886
Q ss_pred ceeeeeCCChhHHHHHHHHhhc
Q 007053 458 QLIYIPLPDEESRLQIFKACLR 479 (620)
Q Consensus 458 ~~i~~~~P~~~eR~~Il~~~l~ 479 (620)
+++++.|+.++...|+..++.
T Consensus 1450 -vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHH
Confidence 699999999999999876553
No 122
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.93 E-value=2.7e-05 Score=74.05 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=23.4
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886443
No 123
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.83 E-value=2.4e-05 Score=79.16 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
.++++||||||||||++|++||+.+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 467999999999999999999997543
No 124
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.73 E-value=0.00012 Score=76.49 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=96.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhc-eeeecCcceeeeeccccccchHHHHHhhhc----cCCeeeeeccchh-HH
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDS-IA 400 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~-~i~i~~~~l~~~~~g~se~~i~~if~~A~~----~~p~IL~iDEiD~-l~ 400 (620)
.++.+|||||+|+||++.++++++.+... +-.. ..+ .+-+ ...++++++.+.. +...|++|||+|. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~---~~~-~~~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEH---HTF-SIDP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEE---EEE-ECCT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCee---EEE-EecC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 35679999999999999999999876321 1100 011 1111 2456777766543 3457999999987 53
Q ss_pred hhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC-----CCCCcccccCCCCCCceeeeeCCChhHHHHHHH
Q 007053 401 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-----PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFK 475 (620)
Q Consensus 401 ~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~-----~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~ 475 (620)
....+.|+..++...+ +.++|+++++. ...+.+++.+ |+ ..+.+.+++..+....++
T Consensus 91 --------------~~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 91 --------------AAINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp --------------TTHHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHH
T ss_pred --------------hHHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHH
Confidence 1245667777775433 34455555431 2346677776 65 489999999999999999
Q ss_pred HhhccCCCCCCc-ChHHHHhhcCCCCCCcHHHHHHH
Q 007053 476 ACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQR 510 (620)
Q Consensus 476 ~~l~~~~l~~dv-~l~~LA~~t~G~sg~DL~~l~~~ 510 (620)
..++...+.-+. .+..|++.+ ++|+..+.++
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~----~gdl~~~~~e 184 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCY----EGNLLALAQA 184 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSS----TTCHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHh----chHHHHHHHH
Confidence 888766543221 244455444 3355544443
No 125
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.71 E-value=0.00016 Score=81.10 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=91.0
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhh-----h--ce--eeecCcc
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----A--NF--ISVKGPE 363 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~-----~--~~--i~i~~~~ 363 (620)
...+.|.+...++|.+.+... ....+.++|+||+|+|||+||+.+++... + .+ +.+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 356889999999999887641 12346799999999999999999986431 1 12 2232210
Q ss_pred ---eeee------ecc-------cccc---chHHHHHhh-h-ccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHh
Q 007053 364 ---LLTM------WFG-------ESEA---NVREIFDKA-R-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 422 (620)
Q Consensus 364 ---l~~~------~~g-------~se~---~i~~if~~A-~-~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL 422 (620)
+... ..+ .... .+...+... . ...|.+|+||+++... .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--------------------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--------------------HH
Confidence 0000 000 0111 112222221 1 1267999999996522 11
Q ss_pred hhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeee---CCChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCC
Q 007053 423 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP---LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGF 499 (620)
Q Consensus 423 ~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~---~P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~ 499 (620)
..+ .. +..||.||....... .. . ...+.+. ..+.++-.++|..++.............|++.+.|+
T Consensus 252 ~~l---~~--~~~ilvTsR~~~~~~-~~-~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 252 KAF---DS--QCQILLTTRDKSVTD-SV-M----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp HTT---CS--SCEEEEEESCGGGGT-TC-C----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC
T ss_pred HHh---cC--CCeEEEECCCcHHHH-hc-C----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC
Confidence 222 12 234555665432111 11 1 2234443 678899999998877442211123467888888876
Q ss_pred C
Q 007053 500 S 500 (620)
Q Consensus 500 s 500 (620)
.
T Consensus 321 P 321 (591)
T 1z6t_A 321 P 321 (591)
T ss_dssp H
T ss_pred c
Confidence 3
No 126
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.70 E-value=2.4e-05 Score=79.66 Aligned_cols=67 Identities=28% Similarity=0.410 Sum_probs=47.4
Q ss_pred cchhhhhccc--cCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccccc
Q 007053 211 GGVRKIAKDT--HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE 283 (620)
Q Consensus 211 g~l~~lA~~t--~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~ 283 (620)
-.+..||..| +||+||||.+||++|++.|+++.+..... ....+.+.|+++||..|+..+.||..++
T Consensus 203 ~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~------~~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 203 VNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS------GNEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp CCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred cCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc------cccccCCeecHHHHHHHHHHhcCCCChh
Confidence 3577899875 59999999999999999999987653211 1112356899999999999999986543
No 127
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.66 E-value=4.5e-05 Score=80.52 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=65.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeee----cc--------ccccchHHHHHh----hh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW----FG--------ESEANVREIFDK----AR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~----~g--------~se~~i~~if~~----A~ 384 (620)
|+++..-++|+||||+|||+|+..++..+ +..+++++..+..... +| .......+++.. .+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56677789999999999999999999775 4456666655432100 00 011122233222 23
Q ss_pred ccCCeeeeeccchhHHhh--cCCCCCCC-CCchhHHHHHHhhhhcCCCCcceEEEEcc
Q 007053 385 QSAPCVLFFDELDSIATQ--RGSSVGDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGA 439 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~--r~~~~~~~-~~~~~rvl~~LL~~ld~~~~~~~viVIat 439 (620)
...+.+++||.+..+.+. -....++. -....+.+.+++..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 467889999999888751 11111111 11234666676666554433334444443
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.64 E-value=6.1e-05 Score=97.79 Aligned_cols=129 Identities=21% Similarity=0.213 Sum_probs=88.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcceeeeeccccccchHHHHHhhhccCCeeeeeccchhHHhhcCCCC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV 407 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~~~~~g~se~~i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~ 407 (620)
..+..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+..+|.-+.+.. +-.+||||+++-..
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~G-aW~cfDEfNrl~~~----- 671 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCG-AWGCFDEFNRLEER----- 671 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHH-----
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcC-cEEEehhhhcCCHH-----
Confidence 356789999999999999999999999999999987542 235666776665543 58899999987432
Q ss_pred CCCCCchhHHHHHHh---hh---------hc-C--CCCcceEEEEccCCC----CCCCcccccCCCCCCceeeeeCCChh
Q 007053 408 GDAGGAADRVLNQLL---TE---------MD-G--MSAKKTVFIIGATNR----PDIIDPALLRPGRLDQLIYIPLPDEE 468 (620)
Q Consensus 408 ~~~~~~~~rvl~~LL---~~---------ld-~--~~~~~~viVIatTn~----~~~Ld~al~rpgRf~~~i~~~~P~~~ 468 (620)
...-+..++. .. +. | +.-.....|++|.|. ...|+++++. ||- .+.+..||.+
T Consensus 672 -----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m~~Pd~~ 743 (3245)
T 3vkg_A 672 -----ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAMIKPDRE 743 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEECCSCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEEeCCCHH
Confidence 1111111111 11 11 1 111234567778873 3478899987 774 6999999999
Q ss_pred HHHHHHHH
Q 007053 469 SRLQIFKA 476 (620)
Q Consensus 469 eR~~Il~~ 476 (620)
...+|+-.
T Consensus 744 ~i~ei~L~ 751 (3245)
T 3vkg_A 744 MIAQVMLY 751 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888643
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.61 E-value=5.7e-05 Score=73.03 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
|+.+..-++|+||||+|||+|++.++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4667778999999999999999999984455666665543
No 130
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=4.6e-05 Score=82.40 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=46.3
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 281 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~ 281 (620)
.++.||+.|+||+||||+++|++|++.|+|+.. -.|+++||..|+.++.|+..
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~-----------------~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 375 NWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ-----------------SSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp CHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC-----------------SSBCHHHHHHHHHSCSSSCC
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CCcCHHHHHHHHHHHhCCCC
Confidence 477899999999999999999999999998632 25889999999999988754
No 131
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.55 E-value=0.00041 Score=83.95 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=94.0
Q ss_pred cccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh-------ceeeecCcce-
Q 007053 293 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGPEL- 364 (620)
Q Consensus 293 ~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~-------~~i~i~~~~l- 364 (620)
...+.|.+..+++|.+.+... -...+-+.|+|+.|+|||+||+.+++.... .++.++.+..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 356889999999999887531 123456889999999999999999876311 1223332220
Q ss_pred ----e-------eee---------ccccccchHHHHHhhhc--cCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHh
Q 007053 365 ----L-------TMW---------FGESEANVREIFDKARQ--SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 422 (620)
Q Consensus 365 ----~-------~~~---------~g~se~~i~~if~~A~~--~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL 422 (620)
. ... .......+...+..... .++.+|+||+++... + +
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------~-~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------V-L 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------H-H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------H-H
Confidence 0 000 00011122222322222 337899999987532 1 1
Q ss_pred hhhcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeC-CChhHHHHHHHHhhccCCCCCCcChHHHHhhcCCC
Q 007053 423 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL-PDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGF 499 (620)
Q Consensus 423 ~~ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~-P~~~eR~~Il~~~l~~~~l~~dv~l~~LA~~t~G~ 499 (620)
.. +.+ +..||.||..+...... . .....+.++. ++.++-.++|..+.............+|++.+.|+
T Consensus 252 ~~---~~~--~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 252 KA---FDN--QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp TT---TCS--SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred Hh---hcC--CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 11 122 23455577654332111 1 2234677775 88999999998876433322222356788888776
No 132
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.53 E-value=8.5e-05 Score=72.91 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh--h-------hhceeeecCcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE--C-------QANFISVKGPE 363 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~--l-------~~~~i~i~~~~ 363 (620)
|+++...++|+||||+|||+|++.++.. + +...++++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5667778999999999999999999984 2 34556665544
No 133
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.51 E-value=3.4e-05 Score=81.34 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=49.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee----ecccc--------ccchHHHHH----hhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFGES--------EANVREIFD----KAR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~----~~g~s--------e~~i~~if~----~A~ 384 (620)
|+++...++|+||||+|||+|+..++... +..+++++....... ..|.. .....+++. .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56677789999999999999999998665 345555554432211 01100 011222222 233
Q ss_pred ccCCeeeeeccchhHHh
Q 007053 385 QSAPCVLFFDELDSIAT 401 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~ 401 (620)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56689999999999873
No 134
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.49 E-value=0.00011 Score=71.21 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|+.+...++|+||+|+|||+|++.++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45667789999999999999999999654
No 135
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=3.1e-05 Score=83.22 Aligned_cols=53 Identities=34% Similarity=0.529 Sum_probs=45.7
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 281 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~ 281 (620)
.++.||+.|+||+||||+++|++|++.|+|+.. ..|+++||..|+.++.|+..
T Consensus 376 dl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~-----------------~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 376 NLETLVTTKDDLSGADIQAMCTEAGLLALRERR-----------------MQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-----------------SCBCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999998632 35889999999998776643
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=3e-05 Score=82.93 Aligned_cols=51 Identities=37% Similarity=0.670 Sum_probs=44.4
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPS 279 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps 279 (620)
.++.||+.|+||+||||+++|++|++.|+|+. ...|+++||..|+.++.+.
T Consensus 342 dl~~lA~~t~G~SGADi~~l~~eA~~~Air~~-----------------~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 342 NLRKVAEKMNGCSGADVKGVCTEAGMYALRER-----------------RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHhCc
Confidence 57889999999999999999999999999863 2358999999999877554
No 137
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.49 E-value=6.4e-05 Score=79.71 Aligned_cols=117 Identities=22% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeeee----cccc--------ccchHHHHHh----hh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW----FGES--------EANVREIFDK----AR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~~----~g~s--------e~~i~~if~~----A~ 384 (620)
|+++...++|+||||+|||+||..++..+ +.++++++...-.... .|.. .....+++.. .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56677789999999999999999988765 4466666654322111 0100 0112222222 23
Q ss_pred ccCCeeeeeccchhHHhhcCCC-C-CCC-CCchhHHHHHHhhhhcCCCCcceEEEEccC
Q 007053 385 QSAPCVLFFDELDSIATQRGSS-V-GDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~~r~~~-~-~~~-~~~~~rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
...+.+|+||.+..+.+..... . ++. .....+.+.+++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4568899999999987422110 0 000 012224556666655433233344555443
No 138
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.47 E-value=0.00023 Score=70.12 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHH
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIA 349 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA 349 (620)
|+.+...+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56677889999999999999999998
No 139
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.42 E-value=8.6e-05 Score=81.00 Aligned_cols=128 Identities=22% Similarity=0.212 Sum_probs=88.9
Q ss_pred CeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEcc---------CC---CCCCCcccccCCCC
Q 007053 388 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA---------TN---RPDIIDPALLRPGR 455 (620)
Q Consensus 388 p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIat---------Tn---~~~~Ld~al~rpgR 455 (620)
|.|+||||+|.|. ....+.|+..|+..... ++|++| ++ .++.|++.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~~--~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESSIAP--IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTSTTCC--EEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhccCCC--EEEEecCCccccccccccccccccCChhHHh--h
Confidence 3599999999974 34678888888755433 555565 33 26678889998 9
Q ss_pred CCceeeeeCCChhHHHHHHHHhhccCCCC-CCcChHHHHhhc-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007053 456 LDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRSEN 533 (620)
Q Consensus 456 f~~~i~~~~P~~~eR~~Il~~~l~~~~l~-~dv~l~~LA~~t-~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~ 533 (620)
|.. +.|++|+.++..++|+..+...... .+..+..++..+ .| +++....+++.|...|..+.
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~-------------- 421 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING-------------- 421 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT--------------
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC--------------
Confidence 975 6999999999999999887533221 122355666666 44 56666667777666655432
Q ss_pred CcccccccccchhhhhHHHHHHHHHHH
Q 007053 534 PEAMEEDVEDEVAEIKAVHFEESMKYA 560 (620)
Q Consensus 534 ~~~~~~~~~~~~~~vt~~df~~Al~~~ 560 (620)
...|+.+|+..|+.-+
T Consensus 422 -----------~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 422 -----------KDSIEKEHVEEISELF 437 (456)
T ss_dssp -----------CSSBCHHHHHHHHHHS
T ss_pred -----------CCccCHHHHHHHHHHh
Confidence 2368999999998765
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=5.4e-05 Score=81.97 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=44.7
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSA 280 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~ 280 (620)
.++.||+.|+||+||||+++|++|++.|+++... .|+++||..|+.++.|+.
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~-----------------~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 375 DFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD-----------------HINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp CHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS-----------------SBCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC-----------------CCCHHHHHHHHHHHHhcc
Confidence 4778999999999999999999999999986322 478999999999877654
No 141
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.35 E-value=7.4e-05 Score=77.72 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=51.8
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccC--------------------------------CccccHHH
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE--------------------------------DETIDAEI 258 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~--------------------------------~~~~~~~~ 258 (620)
..++.||+.|+||+|+||.+||++|++.++|+......+. ...++.+.
T Consensus 202 ~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (322)
T 1xwi_A 202 ADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK 281 (322)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhcccccccccc
Confidence 4578899999999999999999999999999865321100 00122222
Q ss_pred HhhhccChHHHHHhhccCCccc
Q 007053 259 LNSMAVTDEHFKTALGTSNPSA 280 (620)
Q Consensus 259 l~~~~v~~~df~~al~~~~ps~ 280 (620)
+....|+++||..|++.+.||.
T Consensus 282 ~~~~~v~~~df~~al~~~~ps~ 303 (322)
T 1xwi_A 282 LLEPVVSMSDMLRSLSNTKPTV 303 (322)
T ss_dssp BCCCCBCHHHHHHHHHTCCCSC
T ss_pred ccCCCcCHHHHHHHHHhCCCCC
Confidence 2235799999999999998873
No 142
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00011 Score=77.70 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=50.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCcceeee----eccc-----------cccchHHHHHh-hh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFGE-----------SEANVREIFDK-AR 384 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~~~----~~g~-----------se~~i~~if~~-A~ 384 (620)
|+++...++|+||||+|||+||..++..+ +..+++++....... ..|. ....+..+++. .+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46677889999999999999999998765 446666665332210 0010 11122233322 23
Q ss_pred ccCCeeeeeccchhHHh
Q 007053 385 QSAPCVLFFDELDSIAT 401 (620)
Q Consensus 385 ~~~p~IL~iDEiD~l~~ 401 (620)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45688999999999874
No 143
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.33 E-value=0.00013 Score=75.33 Aligned_cols=114 Identities=15% Similarity=0.251 Sum_probs=61.8
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh-----hhceeeecCcceeee----eccc--------cccchHHH-HHh---
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTM----WFGE--------SEANVREI-FDK--- 382 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l-----~~~~i~i~~~~l~~~----~~g~--------se~~i~~i-f~~--- 382 (620)
|+++. .++|+||||+|||+|+-.++... +..++++++.+-+.. .+|- .+....++ +..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 68999999999999988776554 345677765542210 0110 11123333 222
Q ss_pred ---hhccCCeeeeeccchhHHhhcCC--CCCCC---CCchhHHHHHHhhhhcCCCCcceEEEEc
Q 007053 383 ---ARQSAPCVLFFDELDSIATQRGS--SVGDA---GGAADRVLNQLLTEMDGMSAKKTVFIIG 438 (620)
Q Consensus 383 ---A~~~~p~IL~iDEiD~l~~~r~~--~~~~~---~~~~~rvl~~LL~~ld~~~~~~~viVIa 438 (620)
.+...|.+|+||-|..+.+...- ..++. +....|.++++|..|..+....++.+|.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 35567999999999999743211 00110 0134456667666554333333444443
No 144
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.31 E-value=0.00014 Score=75.56 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=63.8
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---------hhceeeecCcceee--------eeccc---------------
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGE--------------- 371 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---------~~~~i~i~~~~l~~--------~~~g~--------------- 371 (620)
|+++...++|+||||+|||+|+..+|... +..+++++....+. ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56677789999999999999999998764 34566666544210 00000
Q ss_pred -cc---cchHHHHHhhhc-cCCeeeeeccchhHHhhcCCCCCCCCCchh--HHHHHHhhhhcCCCCcceEEEEccC
Q 007053 372 -SE---ANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAAD--RVLNQLLTEMDGMSAKKTVFIIGAT 440 (620)
Q Consensus 372 -se---~~i~~if~~A~~-~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~--rvl~~LL~~ld~~~~~~~viVIatT 440 (620)
.+ ..+..+....+. ..+.+|+||.+..+........ +.... ..+.+++..|..+....++.||.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT---TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 01 012223333444 6689999999999975422110 11111 2355555555443333344555443
No 145
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.30 E-value=0.00011 Score=71.37 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.2
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|+.+..-+.|.||+|+|||||++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677789999999999999999999743
No 146
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.00011 Score=70.44 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=29.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
+.+...|+|.|||||||||+++.|+..++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 345678999999999999999999999988876543
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.29 E-value=0.001 Score=71.94 Aligned_cols=205 Identities=12% Similarity=0.110 Sum_probs=102.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee----------------eeec---c-ccccchHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----------------TMWF---G-ESEANVREIFDKA 383 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~----------------~~~~---g-~se~~i~~if~~A 383 (620)
+|..+++.|++|+||||++..||..+ |..+..+.+.... .-+. + .....++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999766 4444444432210 0111 1 1112235566677
Q ss_pred hccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCCCCcc--cccCCCCCCceee
Q 007053 384 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP--ALLRPGRLDQLIY 461 (620)
Q Consensus 384 ~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~~Ld~--al~rpgRf~~~i~ 461 (620)
+...+.+++||....+. ....++.++........+...++|+-++.-.+.++. .+.....+. -+-
T Consensus 179 ~~~~~DvVIIDTaGrl~------------~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gVI 245 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK------------EDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIG-SII 245 (443)
T ss_dssp HHTTCSEEEEECCCCSS------------CCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EEE
T ss_pred HhCCCCEEEEECCCccc------------chHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCe-EEE
Confidence 66667899999874321 112233333222222233445566655432222111 111101111 233
Q ss_pred eeCCChhHHHHHHHHhh--ccCCCC-----------CCcChHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007053 462 IPLPDEESRLQIFKACL--RKSPVS-----------KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 528 (620)
Q Consensus 462 ~~~P~~~eR~~Il~~~l--~~~~l~-----------~dv~l~~LA~~t~G~sg~DL~~l~~~A~~~A~~~~i~~~~~~~~ 528 (620)
+.-.|...+........ .+.|+. ...+.+.++...-| .+|+..|++.|...-..+.+... ..+
T Consensus 246 lTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~--~~~ 321 (443)
T 3dm5_A 246 VTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKEE--DIE 321 (443)
T ss_dssp EECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHHH--HHH
T ss_pred EECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHHH--HHH
Confidence 44444444433222211 122221 22356778887755 57999999887654332210000 000
Q ss_pred HhccCCcccccccccchhhhhHHHHHHHHHHHh
Q 007053 529 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 561 (620)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~ 561 (620)
.. ..-..+.+||.+-+++++
T Consensus 322 k~-------------~~~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 322 RF-------------LRGKFTLKDMYAQLEAMR 341 (443)
T ss_dssp HH-------------HTTCCCHHHHHHHHHHHH
T ss_pred HH-------------hhCCcCHHHHHHHHHHHH
Confidence 00 012488889988888776
No 148
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.28 E-value=0.00019 Score=68.51 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=38.8
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh---hhceeeecCc-------ceeeeeccc-----cccchHHHHHhhhccCCeeeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP-------ELLTMWFGE-----SEANVREIFDKARQSAPCVLFF 393 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~-------~l~~~~~g~-----se~~i~~if~~A~~~~p~IL~i 393 (620)
.-++++||+|+|||+++..++..+ +.+++.+... ..+....|. ......++++.+. ..+.+|+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 457899999999999987666554 3343333211 000000010 0112344454443 24579999
Q ss_pred ccchhH
Q 007053 394 DELDSI 399 (620)
Q Consensus 394 DEiD~l 399 (620)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999875
No 149
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.28 E-value=0.0003 Score=73.75 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---------hhceeeecCcc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE 363 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---------~~~~i~i~~~~ 363 (620)
|+++..-++|+||||+|||+|+..+|... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56777789999999999999999998763 34556665544
No 150
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.24 E-value=0.00014 Score=68.71 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=29.2
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
+..+..|+|.|+||+||||+++.|+..++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4456779999999999999999999998876655
No 151
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00013 Score=79.12 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=43.6
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPS 279 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps 279 (620)
.++.||+.|+||+||||++||++|++.|+|+... .|+++||..|+.++.++
T Consensus 403 dl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~-----------------~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 403 RWELISRLCPNSTGAELRSVCTEAGMFAIRARRK-----------------VATEKDFLKAVDKVISG 453 (467)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS-----------------SBCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC-----------------ccCHHHHHHHHHHHhcC
Confidence 5788999999999999999999999999987422 47889999999876543
No 152
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=0.00017 Score=67.48 Aligned_cols=35 Identities=9% Similarity=0.268 Sum_probs=29.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~ 362 (620)
+..|+|+|+||+||||++++|+..++.+|+.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 35699999999999999999999998887765543
No 153
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.23 E-value=0.00014 Score=68.59 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=29.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
++.|+|.|||||||||+++.||..++.+|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999998877543
No 154
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.16 E-value=0.00016 Score=76.29 Aligned_cols=71 Identities=25% Similarity=0.383 Sum_probs=52.1
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhcccccc--------------------------CCccccHHHHhhhcc
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL--------------------------EDETIDAEILNSMAV 264 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~--------------------------~~~~~~~~~l~~~~v 264 (620)
..++.||+.|+||+|+||..||++|++.|+++......+ .-..++.+.+....|
T Consensus 240 ~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 319 (355)
T 2qp9_X 240 EDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDL 319 (355)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCB
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCc
Confidence 357889999999999999999999999999986432100 001122222234579
Q ss_pred ChHHHHHhhccCCcccc
Q 007053 265 TDEHFKTALGTSNPSAL 281 (620)
Q Consensus 265 ~~~df~~al~~~~ps~~ 281 (620)
+++||..|+..+.||..
T Consensus 320 ~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 320 TIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp CHHHHHHHHHHSCCSSC
T ss_pred cHHHHHHHHHHcCCCCC
Confidence 99999999999998853
No 155
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.13 E-value=0.00067 Score=71.57 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=46.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh----ceeeecCc-ce--------e-eeeccccccchHHHHHhhhccCCeeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGP-EL--------L-TMWFGESEANVREIFDKARQSAPCVLF 392 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~----~~i~i~~~-~l--------~-~~~~g~se~~i~~if~~A~~~~p~IL~ 392 (620)
+...++|.||+|+||||+.++++..+.. .++.+.-+ ++ + ....+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 4456999999999999999999987632 33332211 11 1 111222233456677778788999999
Q ss_pred eccch
Q 007053 393 FDELD 397 (620)
Q Consensus 393 iDEiD 397 (620)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99973
No 156
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0002 Score=77.31 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=42.3
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccC
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 276 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~ 276 (620)
-.++.||..|+||+||||+++|++|++.|+|+.. ..|+++||..|+...
T Consensus 366 ~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~-----------------~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 366 ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEEAYATQ 414 (428)
T ss_dssp CCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHH
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----------------CCCCHHHHHHHHHHh
Confidence 3578999999999999999999999999998632 257899999998753
No 157
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.12 E-value=0.00068 Score=68.34 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=45.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhhc---eeeecCcce----------e-eeeccccccchHHHHHhhhccCCee
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPEL----------L-TMWFGESEANVREIFDKARQSAPCV 390 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~~---~i~i~~~~l----------~-~~~~g~se~~i~~if~~A~~~~p~I 390 (620)
+.+...++|.||+|+||||++++++..+... -+.+....+ + ...++.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 4556679999999999999999999876321 111111110 1 1111212234566666666678999
Q ss_pred eeeccch
Q 007053 391 LFFDELD 397 (620)
Q Consensus 391 L~iDEiD 397 (620)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999973
No 158
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.05 E-value=0.00083 Score=73.17 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
..++|.|+||||||+++.+++..+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998773
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.04 E-value=0.00032 Score=66.47 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=28.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh-hhhceeeec
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE-CQANFISVK 360 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~-l~~~~i~i~ 360 (620)
.+..|+|+|+|||||||+++.|+.. ++++++.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3567999999999999999999998 687776543
No 160
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.04 E-value=0.00031 Score=65.98 Aligned_cols=33 Identities=36% Similarity=0.623 Sum_probs=28.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.++.|+|+|+||+||||+++.++..++..++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 356799999999999999999999998777654
No 161
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.98 E-value=0.00034 Score=65.88 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=27.9
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
..|+|.|+|||||||+++.|+..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35999999999999999999999998876543
No 162
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.96 E-value=0.0029 Score=70.48 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=89.6
Q ss_pred cchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHh----hhhhc-----eeeecCcc---e
Q 007053 297 GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN----ECQAN-----FISVKGPE---L 364 (620)
Q Consensus 297 ~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~----~l~~~-----~i~i~~~~---l 364 (620)
.|.+..+++|.+.+... +-...+.|.|+|+.|+|||+||+.+++ ..... ++.+.... +
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999998887431 112356789999999999999999996 23222 23332210 0
Q ss_pred -------eeeecc--------cccc----chHHHHHhhhcc-CCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhh
Q 007053 365 -------LTMWFG--------ESEA----NVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 424 (620)
Q Consensus 365 -------~~~~~g--------~se~----~i~~if~~A~~~-~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ 424 (620)
+..... .... .+...+...-.. ++.+|+||+++.... + .+..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~---------------~--~~~~- 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET---------------I--RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH---------------H--HHHH-
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh---------------h--cccc-
Confidence 000000 0001 122333333334 378999999876321 1 1111
Q ss_pred hcCCCCcceEEEEccCCCCCCCcccccCCCCCCceeeeeCCChhHHHHHHHHhhccCCCCCCc--ChHHHHhhcCCC
Q 007053 425 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV--DLRALAKYTQGF 499 (620)
Q Consensus 425 ld~~~~~~~viVIatTn~~~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~~~l~~~~l~~dv--~l~~LA~~t~G~ 499 (620)
. .+..||.||..... .... +.....+.++..+.++-.++|..+....+...+. ....+++.+.|.
T Consensus 263 ~------~gs~ilvTTR~~~v-~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEI-SNAA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp H------TTCEEEEEESBGGG-GGGC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred c------CCCEEEEEcCCHHH-HHHc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 1 22345556654321 1111 1133568899999999999999885333210110 134566666664
No 163
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.95 E-value=0.00043 Score=64.29 Aligned_cols=31 Identities=23% Similarity=0.621 Sum_probs=26.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
+..+.|.||+||||||+++.|+..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3569999999999999999999998865543
No 164
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.00038 Score=64.28 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.|+|.||||+||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999987776543
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00035 Score=65.30 Aligned_cols=30 Identities=33% Similarity=0.603 Sum_probs=26.8
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|+|.|||||||||+++.||..++.+|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999998877653
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.95 E-value=0.00036 Score=65.94 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
+.++..+.|.||||+||||+++.|+...+...+.++..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 455677999999999999999999988666666666544
No 167
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.95 E-value=0.00042 Score=74.23 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
|+.+..-++|+||||||||+|++.++-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 677788899999999999999997763
No 168
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.0008 Score=65.92 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.5
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|+.+...++|+||||+|||+|+..++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677789999999999999998887543
No 169
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.92 E-value=0.00074 Score=71.01 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=26.6
Q ss_pred cCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 323 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 323 ~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.|+++..-+.|+||||+|||+|++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367778889999999999999999999875
No 170
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.92 E-value=0.001 Score=72.12 Aligned_cols=169 Identities=18% Similarity=0.294 Sum_probs=99.0
Q ss_pred hHHHHHhhhccCCeeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCC--------CcceEEEEccC----CCC
Q 007053 376 VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRP 443 (620)
Q Consensus 376 i~~if~~A~~~~p~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~--------~~~~viVIatT----n~~ 443 (620)
.+...+.|..+ .+||+||||.++...+...++ ....-+...||..|++.. ...++++|+|. +.+
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D--~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGEYSGAD--VSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSH--HHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccCCCCCC--chHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 34444554333 399999999998543211111 112236778999998742 23467888876 233
Q ss_pred CCCcccccCCCCCCceeeeeCCChhHHHHHHH---Hhh-c---------cCCCC-CCcChHHHHhh-------cCCCCCC
Q 007053 444 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFK---ACL-R---------KSPVS-KDVDLRALAKY-------TQGFSGA 502 (620)
Q Consensus 444 ~~Ld~al~rpgRf~~~i~~~~P~~~eR~~Il~---~~l-~---------~~~l~-~dv~l~~LA~~-------t~G~sg~ 502 (620)
..+-|.|+. ||..++.|+.++.++...|+. .++ + +..+. .+..+..|++. |...-.+
T Consensus 317 ~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR 394 (444)
T 1g41_A 317 SDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGAR 394 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGG
T ss_pred hhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCch
Confidence 345577876 999999999999999999993 222 1 11111 11124455543 3444456
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccchhhhhHHHHHHHHHHHhhcCChHHHHHH
Q 007053 503 DITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKY 572 (620)
Q Consensus 503 DL~~l~~~A~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~df~~Al~~~~psvs~~di~~~ 572 (620)
-|..++.+++..+..+... . ......|+.+++...+. |.+..+|+..|
T Consensus 395 ~L~~~ie~~~~~~~~~~~~-----------~--------~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 395 RLHTVMERLMDKISFSASD-----------M--------NGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp HHHHHHHHHHHHHHHHGGG-----------C--------TTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc-----------c--------CCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 6666666655544443210 0 01234688888876554 66777777766
No 171
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.90 E-value=0.0002 Score=74.25 Aligned_cols=71 Identities=27% Similarity=0.440 Sum_probs=53.1
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCC--------------------------ccccHHHHhhhccC
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED--------------------------ETIDAEILNSMAVT 265 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~--------------------------~~~~~~~l~~~~v~ 265 (620)
.++.||+.|+||+|+||..||++|++.++++....+.... ..++.+.+....|+
T Consensus 208 ~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 287 (322)
T 3eie_A 208 DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLT 287 (322)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCC
Confidence 5788999999999999999999999999998765432110 01111222235699
Q ss_pred hHHHHHhhccCCccccc
Q 007053 266 DEHFKTALGTSNPSALR 282 (620)
Q Consensus 266 ~~df~~al~~~~ps~~r 282 (620)
++||..|++.+.|+...
T Consensus 288 ~~df~~al~~~~ps~~~ 304 (322)
T 3eie_A 288 IKDFLKAIKSTRPTVNE 304 (322)
T ss_dssp HHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHhcCCCCCH
Confidence 99999999999988543
No 172
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.90 E-value=0.00046 Score=64.00 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=28.3
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
..|+|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999888764
No 173
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.87 E-value=0.00028 Score=76.64 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=51.2
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccC--------------------------------CccccHHH
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE--------------------------------DETIDAEI 258 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~--------------------------------~~~~~~~~ 258 (620)
..+..||..|.||+|+||.+||++|++.++|+......+. ...++.+.
T Consensus 324 ~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (444)
T 2zan_A 324 ADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK 403 (444)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh
Confidence 3578899999999999999999999999999865321000 00111122
Q ss_pred HhhhccChHHHHHhhccCCccc
Q 007053 259 LNSMAVTDEHFKTALGTSNPSA 280 (620)
Q Consensus 259 l~~~~v~~~df~~al~~~~ps~ 280 (620)
+....|+++||..|+..+.||.
T Consensus 404 ~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 404 LLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp BCCCCEEHHHHHHHHHTCCCSC
T ss_pred ccCCccCHHHHHHHHHhCCCCC
Confidence 2235799999999999998873
No 174
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.85 E-value=0.00044 Score=65.00 Aligned_cols=32 Identities=38% Similarity=0.619 Sum_probs=27.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.|+|||||||+++.|++.++.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 45699999999999999999999988766543
No 175
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00057 Score=65.38 Aligned_cols=32 Identities=38% Similarity=0.506 Sum_probs=28.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.|+||+||||+++.|+..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45699999999999999999999998876654
No 176
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.84 E-value=0.00044 Score=65.47 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.+..|+|.|+|||||||+++.|+..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356799999999999999999999998776654
No 177
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.82 E-value=0.00052 Score=64.68 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=27.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
+..|+|.|+|||||||+++.|+..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4569999999999999999999998876654
No 178
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.82 E-value=0.0017 Score=68.94 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=49.3
Q ss_pred hhhhcCCCCCceeeeecCCCChhHHHHHHHHhhhhh----ceeeecCc-ce--------ee-eeccccccchHHHHHhhh
Q 007053 319 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGP-EL--------LT-MWFGESEANVREIFDKAR 384 (620)
Q Consensus 319 ~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~l~~----~~i~i~~~-~l--------~~-~~~g~se~~i~~if~~A~ 384 (620)
.+..+.+.+...++|.||+|+||||++++++..+.. .++.+..+ ++ +. ..+|.....+...+..+.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 344444556677999999999999999999987642 22222211 10 11 111112234455666666
Q ss_pred ccCCeeeeeccch
Q 007053 385 QSAPCVLFFDELD 397 (620)
Q Consensus 385 ~~~p~IL~iDEiD 397 (620)
...|.+|++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999973
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.0031 Score=61.74 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=23.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
|+++..-++|+|+||+|||++|..+|..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5677788999999999999999887643
No 180
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.81 E-value=0.00041 Score=71.81 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
|+++..-++|+||||+|||+||..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5667778999999999999999999865
No 181
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=96.80 E-value=0.002 Score=62.71 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=55.2
Q ss_pred ceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEeecCCCCC-cceEEeeccCCcccccccchhhhhhhhhhhhhcc
Q 007053 71 DTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKY-GKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYR 149 (620)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~-a~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (620)
....+|..+...+++++|||+.++..||+..||.|.|++. +. .+...++|.. ++. ......+.++++++
T Consensus 26 p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gk---r~k~Tva~v~~~~-~~~-~g~Irid~~~R~N~----- 95 (211)
T 3qwz_A 26 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGX---KRREAVCIVLSDD-TCS-DEKIRMNRVVRNNL----- 95 (211)
T ss_dssp CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECS---TTCEEEEEEEECT-TSC-TTEEEECHHHHHHT-----
T ss_pred CCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCC---CCCcEEEEEEeCC-CCC-CCEEEeCHHHHhhc-----
Confidence 4445676554334999999999999999999999999982 21 2334455543 221 11123456677444
Q ss_pred ccccCCeEEEecC
Q 007053 150 PVRKGDLFLVRGG 162 (620)
Q Consensus 150 ~v~~gd~i~v~~~ 162 (620)
.|+.||.|.|...
T Consensus 96 gV~iGD~V~V~~~ 108 (211)
T 3qwz_A 96 RVRLGDVISIQPC 108 (211)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEC
Confidence 5999999999644
No 182
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.79 E-value=0.00092 Score=68.29 Aligned_cols=37 Identities=38% Similarity=0.535 Sum_probs=30.1
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
.+..++|.||||+||||+++.++.++...++.|++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 4567999999999999999999998855566666533
No 183
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=96.78 E-value=0.002 Score=61.57 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred EecccccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEeecCCCCCcceEEeeccCCcccccccchhhhhhhhh
Q 007053 64 IKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPY 143 (620)
Q Consensus 64 i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~~~~~~~~~~~~~~~~~ 143 (620)
++-|+. ....+|..+...+.+++|||+.++..||+..||.|.|++. . ...+...++|.. ++. ......+.+++++
T Consensus 17 ~~~~~~-p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gk-r-~k~Tva~v~~~~-~~~-~g~Irid~~~R~N 91 (187)
T 3tiw_A 17 LKQKSR-PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGK-K-RREAVCIVLSDD-TCS-DEKIRMNRVVRNN 91 (187)
T ss_dssp -----C-CCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECS-T-TCEEEEEEEECT-TSC-TTEEEECHHHHHH
T ss_pred hhcccC-CCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECC-C-CCeEEEEEEECC-CCC-CCEEEeCHHHHhh
Confidence 333443 3444666554344899999999999999999999999982 1 113334556654 221 1112345666644
Q ss_pred hhhhccccccCCeEEEecC
Q 007053 144 FTEAYRPVRKGDLFLVRGG 162 (620)
Q Consensus 144 ~~~~~~~v~~gd~i~v~~~ 162 (620)
+ .|+.||.|.|...
T Consensus 92 ~-----gV~iGD~V~V~~~ 105 (187)
T 3tiw_A 92 L-----RVRLGDVISIQPC 105 (187)
T ss_dssp T-----TCCTTCEEEEEEC
T ss_pred c-----CCCCCCEEEEEEC
Confidence 4 5999999999644
No 184
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.78 E-value=0.00054 Score=63.04 Aligned_cols=29 Identities=38% Similarity=0.555 Sum_probs=25.3
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|+|.||||+||||+++.| ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888776654
No 185
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00065 Score=63.86 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
..|+|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 186
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.76 E-value=0.00063 Score=63.05 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=27.2
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+.|+|.|+|||||||+++.|+..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999998876653
No 187
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.00059 Score=66.76 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.+..|+|.|+|||||||+++.|+..++..++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 356799999999999999999999988776654
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00067 Score=65.93 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=27.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.|+||+||||+++.|+..++..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999998776654
No 189
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.74 E-value=0.00068 Score=63.72 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.|+|||||||+++.|+..++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45799999999999999999999988766544
No 190
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.00067 Score=63.12 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=24.5
Q ss_pred CceeeeecCCCChhHHHHHHHHh-hhhhcee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIAN-ECQANFI 357 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~-~l~~~~i 357 (620)
+.-|+|.|+||+||||+++.|+. .++..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 35689999999999999999998 4554444
No 191
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.72 E-value=0.00065 Score=66.08 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=27.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
...|+|.|+|||||||+++.|+..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999998777654
No 192
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.72 E-value=0.00073 Score=67.63 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=28.2
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
.++|.|||||||||+|++||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999888776654
No 193
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.70 E-value=0.00092 Score=63.97 Aligned_cols=31 Identities=32% Similarity=0.618 Sum_probs=26.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
+..|+|.|++|+||||+++.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999998766554
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.70 E-value=0.00073 Score=64.06 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.2
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.+..|+|.|+||+||||+++.|+..++..++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356799999999999999999999998766544
No 195
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.67 E-value=0.0027 Score=71.18 Aligned_cols=98 Identities=21% Similarity=0.336 Sum_probs=54.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh---hceeeecCcc----eeeeeccccccchHHHHHhh---------hccCCeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPE----LLTMWFGESEANVREIFDKA---------RQSAPCVL 391 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~---~~~i~i~~~~----l~~~~~g~se~~i~~if~~A---------~~~~p~IL 391 (620)
...++|.||||||||+++.+++..+. .+++.+.... .+....+.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 45789999999999999999987653 3333221111 01111122233344443221 11134799
Q ss_pred eeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCC
Q 007053 392 FFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 442 (620)
Q Consensus 392 ~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~ 442 (620)
+|||+..+. ...+..|+..+. ....+++++-.+.
T Consensus 284 IIDEasml~--------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 284 IVDEVSMMG--------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp EECCGGGCC--------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EEcCccCCC--------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 999987653 234555555443 4456777765543
No 196
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=96.66 E-value=0.003 Score=60.34 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=52.1
Q ss_pred CCCCCCceeeeHhhhcccccccCCeEEEeecCCCCCcceEEeecc-CCcccccccchhhhhhhhhhhhhccccccCCeEE
Q 007053 80 DTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV-DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFL 158 (620)
Q Consensus 80 ~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~ 158 (620)
.|.+++++|||+..+..||+..||.|.|+. +..+..+++|. .+++. ......+.++++++ .|..||.|.
T Consensus 17 ~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G----~r~t~a~v~~~~~ed~~-~g~Irid~~~R~N~-----gv~iGD~V~ 86 (185)
T 1cz4_A 17 TDPGMSRVRLDESSRRLLDAEIGDVVEIEK----VRKTVGRVYRARPEDEN-KGIVRIDSVMRNNC-----GASIGDKVK 86 (185)
T ss_dssp CCCCSSEEEECHHHHHTTCCCTTCEEEEES----SSEEEEEEEECSSTTTT-TSEEECCHHHHHHH-----TCCTTCEEE
T ss_pred cccCCCEEEECHHHHHHcCCCCCCEEEEEc----CCeEEEEEEEcCcCcCC-CCEEEeCHHHHhcc-----CCCCCCEEE
Confidence 588899999999999999999999999997 33455666675 33331 11123355666444 599999999
Q ss_pred Eec
Q 007053 159 VRG 161 (620)
Q Consensus 159 v~~ 161 (620)
|..
T Consensus 87 V~~ 89 (185)
T 1cz4_A 87 VRK 89 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 953
No 197
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.65 E-value=0.00075 Score=63.15 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=23.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
+..|+|.|+||+||||+++.|+..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999998776
No 198
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.65 E-value=0.00089 Score=66.52 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=28.8
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.++..|+|.||||+||||+++.|+..++..++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567799999999999999999999887666544
No 199
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=0.00074 Score=65.74 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=27.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.||||+||||+++.||..++..++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999998765543
No 200
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.64 E-value=0.00097 Score=65.39 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=29.9
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCccee
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 365 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l~ 365 (620)
..++-|+|.||||+||+|.|+.|+..++++.+ +..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 45677899999999999999999998876544 434443
No 201
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.64 E-value=0.00087 Score=66.92 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=31.5
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
..+..++|.|+||+||||+++.|+..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 346679999999999999999999998766666665443
No 202
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.63 E-value=0.0015 Score=67.89 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=31.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
++.++|.||+|||||+|++.||..++..++.++.-.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 3569999999999999999999999988888875443
No 203
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=96.63 E-value=0.02 Score=54.80 Aligned_cols=132 Identities=12% Similarity=0.066 Sum_probs=87.7
Q ss_pred eEeccccCC---CCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEE
Q 007053 31 LVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSV 107 (620)
Q Consensus 31 ~~v~~~~~~---~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v 107 (620)
|+|..+..+ =...|+++|.++. .+-+|+|.|+ -|..+.+....+.|.|-++...|.-+++++||.|.|
T Consensus 8 l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~~----fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v~V 78 (189)
T 1cr5_A 8 LKVSNCPNNSYALANVAAVSPNDFP-----NNIYIIIDNL----FVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQA 78 (189)
T ss_dssp EEEEECCCHHHHTTTEEEECTTTSC-----SSCEEEETTT----EEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEE
T ss_pred EEEEeCCChhhhhcceEEECHHHcC-----CCceEEEcCc----EEEEEecCCCCCCCEEecCHHHHHhhcccCCCeEEE
Confidence 455544332 3457899999985 2347788432 455566778899999999999999999999999999
Q ss_pred eecC------CCCCcceEEee--ccC--Cc-ccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEe
Q 007053 108 HQCA------DVKYGKRVHIL--PVD--DT-IEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIET 173 (620)
Q Consensus 108 ~~~~------~~~~a~~v~~~--p~~--~~-~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~ 173 (620)
++.. +..+...++|. ... .. -..+..+.+...+++.|. +.+...|+.+.....+..+.++|.++
T Consensus 79 ~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~i 153 (189)
T 1cr5_A 79 KAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYE--SQIFSPTQYLIMEFQGHFFDLKIRNV 153 (189)
T ss_dssp EECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHT--TCEECTTCEEEEEETTEEEEEEEEEE
T ss_pred EEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEEEE
Confidence 9851 11223334432 111 10 122444445566666775 56899999999987776677777665
No 204
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.63 E-value=0.0016 Score=65.87 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|+.+..-++|+||+|+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55667789999999999999999998644
No 205
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.61 E-value=0.001 Score=65.42 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=27.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.|+|||||||+++.|+..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999998776654
No 206
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.61 E-value=0.0026 Score=62.60 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=42.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCc-------ceeeeecccc-----ccchHHHHHhhhc----cCC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP-------ELLTMWFGES-----EANVREIFDKARQ----SAP 388 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~-------~l~~~~~g~s-----e~~i~~if~~A~~----~~p 388 (620)
..-++++||+|+|||+++..++..+ +..++.++.. .+.+. .|.. -....++++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4557889999999999998888766 3344444211 11111 1211 1123355555544 357
Q ss_pred eeeeeccchhH
Q 007053 389 CVLFFDELDSI 399 (620)
Q Consensus 389 ~IL~iDEiD~l 399 (620)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999764
No 207
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.61 E-value=0.00094 Score=61.63 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=26.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|+|.|+||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999998777653
No 208
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.60 E-value=0.001 Score=63.56 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=27.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|+|.|+|||||||+++.|++.++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45689999999999999999999988766654
No 209
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=96.59 E-value=0.018 Score=56.09 Aligned_cols=141 Identities=9% Similarity=0.099 Sum_probs=93.8
Q ss_pred ceEEeChhhHhhhcccCCCeEEE-ecccccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEeecCCC---CCcc
Q 007053 42 SVVVLHPDTMEKLQFFRGDTILI-KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADV---KYGK 117 (620)
Q Consensus 42 ~~~~~~~~~~~~l~~~~gd~v~i-~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~---~~a~ 117 (620)
..|+++|.++. .+..|.+ .|... .-|..+.+....+.|.|-++...|.-+++++||.|.|++...- .+..
T Consensus 24 N~~~vsp~Df~-----~~~~v~v~~~~~~-~fVft~~~~~~i~~G~Igls~~QR~wa~lsl~~~v~V~~y~~~~~~~~l~ 97 (211)
T 1qcs_A 24 NCAVVSEKDYQ-----SGQHVIVRTSPNH-KYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIG 97 (211)
T ss_dssp TCEEECTTTCC-----TTCEEEEEEETTE-EEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEEEEECCCHHHHBEE
T ss_pred ceEEECHHHcC-----CCceEEEEecCCC-eEEEEEecCCCCCCCEeecCHHHHhhhcccCCCcEEEEEecCCCCCceEE
Confidence 45889998885 3445677 44321 3555666788999999999999999999999999999986211 1123
Q ss_pred eEEee--ccC--C-cccccccchhhhhhhhhhhhhccccccCCeEEEecCceeEEEEEEEe-----------------CC
Q 007053 118 RVHIL--PVD--D-TIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIET-----------------DP 175 (620)
Q Consensus 118 ~v~~~--p~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~~~~~~~~~~v~~~-----------------~p 175 (620)
.++|. ... . +...+..+.+...+++.|. +.++..|+.+.....+..+.++|.++ .|
T Consensus 98 si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~v~~~d~~~~~~~~~~~~~~~ 175 (211)
T 1qcs_A 98 TMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFN--NQAFSVGQQLVFSFNDKLFGLLVKDIEAMDPSILKGEPASGKRQK 175 (211)
T ss_dssp EEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHT--TCEEETTCEEEEEETTEEEEEEEEEEEECCCCTTC-------CCB
T ss_pred EEEEEEEehhcCCCCCcccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEeEEEEecccccccCcccccCCC
Confidence 34432 111 1 1122444445566666775 56899999999987776677777763 12
Q ss_pred CCceeecCCceEeeC
Q 007053 176 PEYCVVAPDTEIFCE 190 (620)
Q Consensus 176 ~~~~~~~~~t~~~~~ 190 (620)
....+++++|.|.+.
T Consensus 176 ~~~GiL~~~T~i~F~ 190 (211)
T 1qcs_A 176 IEVGLVVGNSQVAFE 190 (211)
T ss_dssp CSEEECCTTCEEEEE
T ss_pred cceeEEcCCcEEEEE
Confidence 235677888877654
No 210
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.57 E-value=0.0009 Score=64.68 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|+|.||||+||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999988766654
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.56 E-value=0.00095 Score=64.44 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=26.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|+|.||||+||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 388999999999999999999988776654
No 212
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.0017 Score=61.89 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh-hhceeeec
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVK 360 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l-~~~~i~i~ 360 (620)
.+..|.|.|++|+||||+++.|+..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999998 67776654
No 213
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.54 E-value=0.0014 Score=61.11 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=25.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
...++|.||+|+||||+++.++..+|..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 456899999999999999999998875544
No 214
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.53 E-value=0.0052 Score=68.39 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=50.2
Q ss_pred eeeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC--CCcccccCCCCCCceeeeeCCC
Q 007053 389 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPLPD 466 (620)
Q Consensus 389 ~IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~--~Ld~al~rpgRf~~~i~~~~P~ 466 (620)
.+|+|||++.|..... ......+..+... ...-++.+|.+|.+|. .|+..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 5899999998875321 1222233333332 2234688888898887 78877765 677788899999
Q ss_pred hhHHHHHHH
Q 007053 467 EESRLQIFK 475 (620)
Q Consensus 467 ~~eR~~Il~ 475 (620)
..+...||.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888888874
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.52 E-value=0.0012 Score=69.26 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=27.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
..++|.||||+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999998865
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.50 E-value=0.0014 Score=62.82 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.+..|+|.|+|||||||+++.|+..++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 456799999999999999999999988766554
No 217
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.49 E-value=0.0058 Score=67.31 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=49.0
Q ss_pred Ce-eeeeccchhHHhhcCCCCCCCCCchhHHHHHHhhhhcCCCCcceEEEEccCCCCC--CCcccccCCCCCCceeeeeC
Q 007053 388 PC-VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 464 (620)
Q Consensus 388 p~-IL~iDEiD~l~~~r~~~~~~~~~~~~rvl~~LL~~ld~~~~~~~viVIatTn~~~--~Ld~al~rpgRf~~~i~~~~ 464 (620)
|. +|+|||+..+..... .....++..+... ...-++.+|.+|.+|. .++..++. .|...|-|..
T Consensus 297 P~ivlvIDE~~~ll~~~~-------~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVG-------KKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHHH-------HHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhhh-------HHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 899999988874210 0122223333222 2233677778888886 57776665 6777888999
Q ss_pred CChhHHHHHHHH
Q 007053 465 PDEESRLQIFKA 476 (620)
Q Consensus 465 P~~~eR~~Il~~ 476 (620)
.+..+...|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999988888764
No 218
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.49 E-value=0.0077 Score=57.55 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.0
Q ss_pred eeeeecCCCChhHHHHHHHHhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 219
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.45 E-value=0.0016 Score=62.39 Aligned_cols=30 Identities=37% Similarity=0.680 Sum_probs=25.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
++..+.|.||+|+||||+++.|+..+|..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~ 57 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF 57 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE
Confidence 456799999999999999999999886443
No 220
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.40 E-value=0.0016 Score=62.44 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.+..|+|.|+|||||||+++.|+..++..++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 456799999999999999999999987665544
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.40 E-value=0.002 Score=60.36 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecC
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 361 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~ 361 (620)
++..+.|.|++|+||||+++.|+..+ |.+++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 35568899999999999999999987 777776653
No 222
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.37 E-value=0.0016 Score=65.21 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=28.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhh---hhhceeeecCcc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE---CQANFISVKGPE 363 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~---l~~~~i~i~~~~ 363 (620)
+.-|+|.|+||+||||+|+.|+.. .|..++.++...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 456999999999999999999998 566666555443
No 223
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.36 E-value=0.0017 Score=63.15 Aligned_cols=29 Identities=45% Similarity=0.612 Sum_probs=25.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.|+|.||||+||+|.|+.|++.++++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 37899999999999999999998766544
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.34 E-value=0.0051 Score=66.40 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=43.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecCccee----------------eeeccccc----cchHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----------------TMWFGESE----ANVREIFDKA 383 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~~l~----------------~~~~g~se----~~i~~if~~A 383 (620)
++..+++.||+|+||||++..||..+ +..+..+.+.... ..+..... ......+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999999766 3344433322110 00111111 1123445556
Q ss_pred hccCCeeeeeccchh
Q 007053 384 RQSAPCVLFFDELDS 398 (620)
Q Consensus 384 ~~~~p~IL~iDEiD~ 398 (620)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 656778999998743
No 225
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.33 E-value=0.0016 Score=61.04 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=22.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.|+|.|+||+||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999886
No 226
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.33 E-value=0.0022 Score=62.16 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=26.2
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
..|.|.||+||||||+++.|+..++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999998876554
No 227
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.31 E-value=0.0016 Score=62.97 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.3
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|+|.|+||+||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999988766554
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.29 E-value=0.018 Score=58.92 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
++..++|.||+|+||||++..+|..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 466799999999999999999997653
No 229
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.27 E-value=0.0048 Score=63.70 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|+.+..-++|.|+||+|||+|+..+|...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66777889999999999999999998654
No 230
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.27 E-value=0.0026 Score=66.34 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=48.1
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCcceee--------eeccccccchHHHHHhhhccCCeeeeecc
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT--------MWFGESEANVREIFDKARQSAPCVLFFDE 395 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~~l~~--------~~~g~se~~i~~if~~A~~~~p~IL~iDE 395 (620)
.+...++|.||+|+|||||+++++..... ..+.+.....+. .++.......+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 45678999999999999999999987632 234444322110 11111234556667777778899999999
Q ss_pred ch
Q 007053 396 LD 397 (620)
Q Consensus 396 iD 397 (620)
.-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 231
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.23 E-value=0.0025 Score=59.97 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=26.6
Q ss_pred eeeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
.|.|.|+|||||||+++.|+..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 77776654
No 232
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.20 E-value=0.002 Score=61.59 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.++..+.|.||+||||||++++|+..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999999884
No 233
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.19 E-value=0.0082 Score=57.70 Aligned_cols=31 Identities=26% Similarity=0.194 Sum_probs=24.2
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh---hhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC---QANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l---~~~~i~i 359 (620)
..|++|+++|.||||+|-++|-.. |..+..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999988665 4444444
No 234
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.16 E-value=0.0027 Score=62.77 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=26.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
+..+.|.||+|+||||+++.|+..++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 567999999999999999999998876543
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.15 E-value=0.0024 Score=60.57 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=25.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.|.|.|++||||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999876553
No 236
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.14 E-value=0.0026 Score=62.09 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=25.8
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|+|.|+||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 488999999999999999999988665543
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.14 E-value=0.002 Score=64.46 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
...|.|.|++|+||||+++.||..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 56799999999999999999999999877664
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.09 E-value=0.0032 Score=62.33 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=27.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
+..+.|.||+||||||+++.|+..++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4569999999999999999999999876654
No 239
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.08 E-value=0.005 Score=66.89 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|+.+..-++|.|+||+|||+|+..+|...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 67778889999999999999999988754
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.07 E-value=0.0024 Score=60.97 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.7
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.|.|.|++||||||+++.|+. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 877666543
No 241
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.05 E-value=0.0035 Score=59.17 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.4
Q ss_pred eeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 331 VLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
|.|.|++||||||+++.|+..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 77776543
No 242
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.00 E-value=0.0079 Score=61.99 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.++..++|.||+|+||||++..+|..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456779999999999999999999876
No 243
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.98 E-value=0.0035 Score=59.74 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
+..|+|.|+||+||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999999999999988763
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.96 E-value=0.0036 Score=60.04 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=25.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+.++..++|.||||+||||+++.|+..+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345677899999999999999999998874
No 245
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.95 E-value=0.0039 Score=64.26 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=31.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcce
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 364 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~l 364 (620)
++-++|.||+|+|||+|+..+|..++..+++.+.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4568899999999999999999999888887766544
No 246
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.93 E-value=0.0064 Score=60.04 Aligned_cols=31 Identities=32% Similarity=0.264 Sum_probs=25.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
.++++||+|+|||.++.+++...+..++.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4999999999999999988887765555443
No 247
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.93 E-value=0.0045 Score=63.31 Aligned_cols=69 Identities=26% Similarity=0.406 Sum_probs=48.3
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCc-c------ccHH-HHhhhccChHHHHHhhccCCccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE-T------IDAE-ILNSMAVTDEHFKTALGTSNPSA 280 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~-~------~~~~-~l~~~~v~~~df~~al~~~~ps~ 280 (620)
.+..+|..|+||+|+||..+|++|++.|+++.+........ . ...+ ......|+++||..|++.+.|+.
T Consensus 209 ~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 209 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp CHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 46789999999999999999999999999887643111000 0 0000 01124699999999999998864
No 248
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.91 E-value=0.0036 Score=59.37 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=26.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|.|.|++||||||+++.|+.. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 456899999999999999999998 7666543
No 249
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.91 E-value=0.0041 Score=59.24 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.8
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
.|.|.|++||||||+++.|+..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999777654
No 250
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.89 E-value=0.0042 Score=65.98 Aligned_cols=28 Identities=39% Similarity=0.688 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3456678899999999999999999765
No 251
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.87 E-value=0.0041 Score=59.63 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=27.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh-hhceeeec
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVK 360 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l-~~~~i~i~ 360 (620)
++.-+.|.|++|+||||+++.|+..+ +..++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 44568899999999999999999987 56555443
No 252
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.86 E-value=0.0091 Score=65.65 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=29.2
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh----hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~ 360 (620)
|+.+..-++|.|+||+|||+|+..+|... +.++++++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 67778889999999999999999988654 33455444
No 253
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.86 E-value=0.0062 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
..|++.|+||+|||+++-.+|..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 469999999999999999998776
No 254
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.85 E-value=0.0037 Score=59.95 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
..|.|+|++||||||+++.++..+|++++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 45889999999999999999998887776543
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.82 E-value=0.0063 Score=65.92 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
|+.+..-++|.|+||+|||+|+..+|...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67777889999999999999999888654
No 256
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.82 E-value=0.0043 Score=59.94 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=26.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|.|.|++||||||+++.|+. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 77666543
No 257
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.81 E-value=0.0043 Score=59.31 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.1
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.+.|.||+||||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 7766654
No 258
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.79 E-value=0.0045 Score=64.53 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=31.2
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
++.|+|.||+|+|||+|+..||+.++..+|..+.-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 356899999999999999999999998888776544
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.76 E-value=0.031 Score=60.10 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=39.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh---ceeeecCc-cee-----eeecc-ccccchHHHHHhhhccCCeeeeeccc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGP-ELL-----TMWFG-ESEANVREIFDKARQSAPCVLFFDEL 396 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~---~~i~i~~~-~l~-----~~~~g-~se~~i~~if~~A~~~~p~IL~iDEi 396 (620)
...++|.||+|+||||+.++++..+.. +++.+.-+ ++. ...+. .........+..+....|.++++.|+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 445899999999999999999987632 33332211 110 00011 11112333444445567889988874
No 260
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.76 E-value=0.0085 Score=66.17 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=47.5
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh--hceeeecCcc-eee---ee--------ccccccchHHHHHhhhccCCeee
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE-LLT---MW--------FGESEANVREIFDKARQSAPCVL 391 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~--~~~i~i~~~~-l~~---~~--------~g~se~~i~~if~~A~~~~p~IL 391 (620)
..+.+++|.||+|+||||++++++..+. ...+.+..+. +.- .+ ++.....+...+..+....|.++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 3466799999999999999999998763 2345544332 210 00 11122345666777777889999
Q ss_pred eeccc
Q 007053 392 FFDEL 396 (620)
Q Consensus 392 ~iDEi 396 (620)
++.|+
T Consensus 338 ivgEi 342 (511)
T 2oap_1 338 IVGEV 342 (511)
T ss_dssp EESCC
T ss_pred EeCCc
Confidence 99997
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.73 E-value=0.0049 Score=58.65 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.8
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.++..+.|.||+|+||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 446678999999999999999999876
No 262
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.69 E-value=0.0063 Score=60.65 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
...|.|.||+||||||+++.|+..+|..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 456889999999999999999999887654
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.64 E-value=0.006 Score=57.35 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=22.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+-+.|.||+|+|||||++.|+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998653
No 264
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.63 E-value=0.0068 Score=60.22 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=26.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
+..|.|.|++||||||+|+.|+..++.++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 45689999999999999999999998774
No 265
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.62 E-value=0.0049 Score=62.66 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=25.2
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh-hhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC-QANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l-~~~~i~i 359 (620)
.-|+|.|+||+||||+++.|+..+ +..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999864 5555543
No 266
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.60 E-value=0.017 Score=65.16 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.++++||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3569999999999999988877654
No 267
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.59 E-value=0.016 Score=67.13 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=38.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChh-hhhhcCCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPE-KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~-~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
+...|++++-.....+.+.+.-..|..... .+.. .+.....+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345688877667777766665554432211 1111 1223457999999999999987777543
No 268
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.56 E-value=0.026 Score=53.49 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.5
Q ss_pred CceeeeecCCCChhHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LA 345 (620)
.+.+++.+|+|+|||..+
T Consensus 38 ~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 367999999999999863
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.56 E-value=0.0075 Score=56.67 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=24.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
++..++|.|++|+||||+++.++..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999998853
No 270
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.52 E-value=0.0065 Score=65.27 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.1
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
..+.-|+|+|+||+||||+|+.++..++..++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 3456789999999999999999999887655543
No 271
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.50 E-value=0.0067 Score=58.51 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=27.3
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
..|.|.|++|||||++++.|+..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999998776654
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.46 E-value=0.0084 Score=57.67 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.5
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999876
No 273
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.42 E-value=0.0086 Score=58.79 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
.+..|.|.|++|||||++++.|+..+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 45568999999999999999999999876654
No 274
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.06 Score=52.30 Aligned_cols=54 Identities=24% Similarity=0.163 Sum_probs=31.7
Q ss_pred ccccccccchHHHHHHHHHhhcC-cCCCh-hhhhhcCCCCCceeeeecCCCChhHHHH
Q 007053 290 NVNWEDIGGLENVKRELQETVQY-PVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~-pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LA 345 (620)
..+|++++-.....+.|.+.--. |..+. +.+.. +...+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL--ALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEEeCCCCcHHHHH
Confidence 34688887777777777653111 11111 11111 112467999999999999854
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.41 E-value=0.008 Score=57.09 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.++.-+.|.||+|+|||||++.|+...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345668899999999999999999875
No 276
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.39 E-value=0.033 Score=60.15 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecC
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 361 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~ 361 (620)
.+..|+|.|++|+||||++..||..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35679999999999999999999876 345555544
No 277
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.38 E-value=0.0092 Score=57.45 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh----hceeeec
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVK 360 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~----~~~i~i~ 360 (620)
.++..++|.|++|+||||+++.|+..++ .+++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3456789999999999999999999875 3355554
No 278
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.36 E-value=0.0084 Score=57.77 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456688999999999999999998764
No 279
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.35 E-value=0.12 Score=49.57 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=34.3
Q ss_pred eccccccccccchHHHHHHHHHhh-cCcCCCh-hhhhhcCCCCCceeeeecCCCChhHHHHHHHHh
Q 007053 287 EVPNVNWEDIGGLENVKRELQETV-QYPVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l-~~pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
.....+|++++-.+...+.|.+.- ..|..+. +.+..+ ...+.+++.+|+|+|||..+-..+-
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHH
Confidence 334456888877777777776531 1111111 111111 1236799999999999986654443
No 280
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.35 E-value=0.0073 Score=61.28 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=25.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
+..|.|.|++||||||+++.|+ .+|++++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 577666544
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.31 E-value=0.0093 Score=57.13 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh--hceee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFIS 358 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~--~~~i~ 358 (620)
++..+.|.||+|+|||||++.|+..++ ..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 445688999999999999999999887 44443
No 282
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.28 E-value=0.0087 Score=57.73 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=27.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
.++++|.||+|+|||+||..++...+ .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 56799999999999999999998866 6655543
No 283
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.26 E-value=0.0092 Score=61.58 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=28.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecCc
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~~ 362 (620)
+-++|.||+|+|||+|+..||..++..+++.+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4588999999999999999999998777665543
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.25 E-value=0.0096 Score=56.80 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.|+|.||+|+|||+|++.|..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999988764
No 285
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.25 E-value=0.0092 Score=62.31 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=28.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
.-|+|.||+|+|||+||+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999877666554
No 286
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.21 E-value=0.0092 Score=57.12 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.1
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+++.+.|.||+|+|||||++.|+...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999865
No 287
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.06 E-value=0.04 Score=60.55 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=26.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh---hhceeeecC
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 361 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~ 361 (620)
.+..|+|.|++|+||||++..||..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46679999999999999999999766 344444443
No 288
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.06 E-value=0.041 Score=60.75 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHH
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAI 348 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAral 348 (620)
++.+...++|.||+|+|||||++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3456778999999999999999994
No 289
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=95.02 E-value=0.034 Score=50.83 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=42.8
Q ss_pred CCceEEeChhhHhhhcccCCCeEEEecccccceEEEEecCCCCCCCceeeeH
Q 007053 40 DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNK 91 (620)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (620)
....+.|+|+++++|||.+||.|.|...+. ...++|. .++...|.|.|.-
T Consensus 51 ~~~~v~inp~dA~~lGI~dGd~V~V~s~~G-~v~~~a~-t~~i~~g~V~~p~ 100 (146)
T 2ki8_A 51 AVNYAEINEEDWNALGLQEGDRVKVKTEFG-EVVVFAK-KGDVPKGMIFIPM 100 (146)
T ss_dssp SSSEEEECHHHHHHHTCCTTCEEEEECSSC-EEEEEEE-ECSCCTTEEEEES
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEeCCc-EEEEEEe-CCCcCCCEEEEEC
Confidence 356899999999999999999999999987 4556777 7788889888865
No 290
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.02 E-value=0.011 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.0
Q ss_pred eeeeecCCCChhHHHHHHHHhhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.++|.||+|+||||+++.|+...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999997543
No 291
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.02 E-value=0.0043 Score=67.87 Aligned_cols=52 Identities=38% Similarity=0.484 Sum_probs=41.7
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSA 280 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~ 280 (620)
.+..||..|+||+|+||.++|.+|++.|.++.. -.|+.+||..|+..+.+..
T Consensus 209 ~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~-----------------~~I~~~dl~~al~~v~~~~ 260 (476)
T 2ce7_A 209 NLEIIAKRTPGFVGADLENLVNEAALLAAREGR-----------------DKITMKDFEEAIDRVIAGP 260 (476)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHHC---
T ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC-----------------CeecHHHHHHHHHHHhcCc
Confidence 478899999999999999999999999987532 2578889999998876543
No 292
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.01 E-value=0.0047 Score=68.01 Aligned_cols=89 Identities=26% Similarity=0.324 Sum_probs=59.0
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccccccee----
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVV---- 286 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~~~~---- 286 (620)
-.+..||..|+||+|+||+++|.+|++.|.++. .-.|+.+||..++..+.+...+....
T Consensus 223 v~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~-----------------~~~It~~dl~~al~~v~~~~~~~~~~~~~~ 285 (499)
T 2dhr_A 223 VDLALLAKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAADRVMMLPAKKSLVLSPR 285 (499)
T ss_dssp STTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC-----------------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCccCHHHHHHHHHHHhcccccccchhhHH
Confidence 347789999999999999999999999887642 12578899999998877654332211
Q ss_pred eccccccccccchHHHHHHHHHhhcCcCCChhhhhhcCC
Q 007053 287 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 325 (620)
Q Consensus 287 ~~p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~ 325 (620)
+...+.|.++|+ ..+.+++.+++.+.+..+
T Consensus 286 e~~~~a~~e~g~---------av~~~~l~~~~~v~~~~i 315 (499)
T 2dhr_A 286 DRRITAYHEAGH---------ALAAHFLEHADGVHKVTI 315 (499)
T ss_dssp HHHHHHHHHHHH---------HHHHCCSSSCCCCCCEES
T ss_pred HHhhhHHHHHHH---------HHHHhhcCCCCeeeEEEe
Confidence 123455655553 234555555554444443
No 293
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.01 E-value=0.035 Score=60.34 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
...++|+||+|+|||+|++.++....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45699999999999999999987654
No 294
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.98 E-value=0.04 Score=60.90 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
++.+...++|.||+|+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56677789999999999999999998754
No 295
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.98 E-value=0.013 Score=62.62 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=28.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhceeeecC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 361 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i~i~~ 361 (620)
++-|+|.||+|+|||+|+..||..++..+++.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3468899999999999999999999877766554
No 296
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.94 E-value=0.059 Score=55.96 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.++.-+.|.||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999876
No 297
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.90 E-value=0.076 Score=54.48 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=33.7
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChh---hhhhcCCCCCceeeeecCCCChhHHHHHHHHh
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPE---KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~---~~~~~g~~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
..+|++++-.+...+.|.+.=-. -..+- .+..+ +...+.+++.+|+|+|||+.+-..+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~-~~~~~Q~~~i~~~-~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFE-KPTDIQMKVIPLF-LNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCC-SCCHHHHHHHHHH-HHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcCCC-CCCHHHHHHHHHH-hCCCCCEEEECCCCChHHHHHHHHHH
Confidence 34677777666666666653211 11111 11111 12236899999999999997655443
No 298
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.86 E-value=0.016 Score=53.65 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||.|+|||||++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34556678999999999999999999877
No 299
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.86 E-value=0.013 Score=56.35 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=27.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
..|.|.|++|||||++++.||..+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999874
No 300
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.84 E-value=0.013 Score=56.88 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=23.4
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.++..+.|.||+|+|||||++.|+...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4456678999999999999999999866
No 301
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.83 E-value=0.02 Score=55.01 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=41.7
Q ss_pred CCceeeeecCCCChhH-HHHHHHHhhh--hhceeeecCcceeeeec-------cc-----cccchHHHHHhhhccCCeee
Q 007053 327 PSKGVLFYGPPGCGKT-LLAKAIANEC--QANFISVKGPELLTMWF-------GE-----SEANVREIFDKARQSAPCVL 391 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT-~LAralA~~l--~~~~i~i~~~~l~~~~~-------g~-----se~~i~~if~~A~~~~p~IL 391 (620)
..+-.++|||.|+||| .|.+++.+.. +..++.++.. +-..|. |. ......+++...+ ...+|
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvI 95 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVI 95 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEE
Confidence 3456889999999999 8999988765 4455555422 111111 10 0112233333322 24699
Q ss_pred eeccchhH
Q 007053 392 FFDELDSI 399 (620)
Q Consensus 392 ~iDEiD~l 399 (620)
+|||+.-+
T Consensus 96 lIDEaQFf 103 (195)
T 1w4r_A 96 GIDEGQFF 103 (195)
T ss_dssp EESSGGGC
T ss_pred EEEchhhh
Confidence 99999887
No 302
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.83 E-value=0.022 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
..+.-+.|.||+|+||||+++.++..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345668999999999999999999876
No 303
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.82 E-value=0.024 Score=61.35 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
|+.+..-++|.|+||+|||+|+..+|... +.+++.++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 67778889999999999999999888655 33454443
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.79 E-value=0.014 Score=55.11 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.0
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 305
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.79 E-value=0.03 Score=65.83 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.7
Q ss_pred CCceeeeecCCCChhHHHHHHHHh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~ 350 (620)
....++|.||.|+||||+.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999874
No 306
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=94.77 E-value=0.028 Score=47.27 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=51.6
Q ss_pred CCceEEeChhhHhhhcccCCCeEEEec-----ccccceEEEEecCCCCCCCceeeeHhhhcccccccCCeEEEee
Q 007053 40 DNSVVVLHPDTMEKLQFFRGDTILIKG-----KKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQ 109 (620)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~gd~v~i~g-----~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~ 109 (620)
.+|.+-|..+..+.||+..||.|.++. .......+.+ .-..+|-|.|...+|+.+|+..||.|.+.-
T Consensus 13 ~~gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~---~v~~kGqitIPkeiR~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 13 RIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTA---RVGEQGSVIIPKALRDVIGIKPGEVIEVLL 84 (92)
T ss_dssp GGGEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEE---ECCGGGEEECCHHHHHHHTCCTTCEEEEEE
T ss_pred CCCEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEE---EECcCceEECcHHHHHHcCCCCCCEEEEEE
Confidence 578899999999999999999999932 1100111111 123689999999999999999999999875
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.69 E-value=0.017 Score=56.99 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=25.3
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhhc
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
.++.-+-|.||+|+|||||++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 445568899999999999999999988754
No 308
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.68 E-value=0.011 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.3
Q ss_pred CCCCceeeeecCCCChhHHHHHHH
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAI 348 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAral 348 (620)
+.++.-+.|.||+|+|||||++.+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 345667999999999999999963
No 309
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.60 E-value=0.019 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.++-+.|.||+|+|||+|+++|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356688999999999999999998764
No 310
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.53 E-value=0.031 Score=63.37 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=30.6
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
..+.|-+-.-.+.+++.+...+.. ..-.||+||||||||+++-.+...
T Consensus 181 ~~~~~~~~~LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 181 HPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp CCCCCSSTTCCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcccccCCCCCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHH
Confidence 344554444566777777665542 224799999999999865544433
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.52 E-value=0.019 Score=59.00 Aligned_cols=30 Identities=27% Similarity=0.572 Sum_probs=26.5
Q ss_pred cCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 323 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 323 ~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+++...+.|.||+|+|||||++.|+..+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 356677889999999999999999999877
No 312
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.52 E-value=0.01 Score=56.72 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
-|.|.|++|+||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998854
No 313
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.47 E-value=0.03 Score=58.88 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=46.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhhh--ceeeecCc-cee-----e--eecc-c-------cccchHHHHHhhhc
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-ELL-----T--MWFG-E-------SEANVREIFDKARQ 385 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~~--~~i~i~~~-~l~-----~--~~~g-~-------se~~i~~if~~A~~ 385 (620)
.+.+...++|.||+|+|||||+++++..... ..+.+... ++. . .++. + ....++..+..+..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR 250 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence 3456778999999999999999999987632 23333321 110 0 0111 0 12245666667767
Q ss_pred cCCeeeeeccch
Q 007053 386 SAPCVLFFDELD 397 (620)
Q Consensus 386 ~~p~IL~iDEiD 397 (620)
..|..++++|+.
T Consensus 251 ~~pd~~l~~e~r 262 (361)
T 2gza_A 251 MKPTRILLAELR 262 (361)
T ss_dssp SCCSEEEESCCC
T ss_pred cCCCEEEEcCch
Confidence 788899998863
No 314
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.46 E-value=0.046 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=19.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
+.+++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999988777654
No 315
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.45 E-value=0.11 Score=53.87 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=31.0
Q ss_pred ccccccchHHHHHHHHHhhc-CcCCC-hhhhhhcCCCCCceeeeecCCCChhHHHHHH
Q 007053 292 NWEDIGGLENVKRELQETVQ-YPVEH-PEKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 347 (620)
Q Consensus 292 ~~~di~Gl~~~k~~L~e~l~-~pl~~-~~~~~~~g~~~~~~vLL~GppGtGKT~LAra 347 (620)
+|++++-.....+.|.+.-- .|..+ .+.+..+-...++.+++.+|+|+|||..+-.
T Consensus 6 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp SSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHH
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHH
Confidence 56676666666666655211 11111 0112222112347899999999999986543
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.42 E-value=0.02 Score=55.88 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+.+..-+.|.||+|+|||||++.|+....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 355677799999999999999999998754
No 317
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.42 E-value=0.02 Score=54.86 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=23.7
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.+...+.|.||+|+|||||++.|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34566788999999999999999998763
No 318
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.38 E-value=0.027 Score=57.78 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.++..+.|.||+|+||||+++.+|..+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45667799999999999999999998764
No 319
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.37 E-value=0.021 Score=57.86 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.1
Q ss_pred cCCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 323 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 323 ~g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+++.+..-++|.||||+|||+|++.++..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 366777889999999999999999998765
No 320
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.33 E-value=0.11 Score=50.08 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.5
Q ss_pred CceeeeecCCCChhHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LA 345 (620)
.+.+++.+|+|+|||..+
T Consensus 57 ~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 467999999999999854
No 321
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.28 E-value=0.014 Score=59.07 Aligned_cols=66 Identities=35% Similarity=0.433 Sum_probs=47.8
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccc
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 281 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~ 281 (620)
..++.||..|+||+|+||..||++|++.++|+......-. + ..-..-.|+.+||..|+..+.|+..
T Consensus 212 ~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~---~--~~~~~~~i~~~d~~~a~~~~~~s~~ 277 (297)
T 3b9p_A 212 EALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC---L--DISAMRAITEQDFHSSLKRIRRSVA 277 (297)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------------CCCCCCCCHHHHHHHTTSCCCSSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc---c--cccccCCcCHHHHHHHHHHcCCCCC
Confidence 3577899999999999999999999999998753221000 0 0001236899999999999988754
No 322
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.28 E-value=0.012 Score=60.05 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=24.8
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
..+.-|.|.||+|+|||||++.|+..++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34566889999999999999999998864
No 323
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.25 E-value=0.14 Score=49.96 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=31.3
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcC---CCCCceeeeecCCCChhHHHH
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFG---MSPSKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~LA 345 (620)
|..+|++++-.....+.+.+. . +..+.-++... +...+.+++.+|+|+|||...
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~-g--~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ-N--FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT-T--CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 456777777666666666542 1 11111111100 112467999999999999864
No 324
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.23 E-value=0.07 Score=57.56 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=27.6
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh----hhceeeecC
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKG 361 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l----~~~~i~i~~ 361 (620)
.+++.|++.|++|+||||++..||..+ |..+..+++
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 356789999999999999999998766 344554444
No 325
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.20 E-value=0.027 Score=55.28 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
.+.-|.|.||||+||||+++.|+..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4566889999999999999999998863
No 326
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.17 E-value=0.024 Score=55.83 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=26.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
..+-|.||||+||||+++.|+..++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3577899999999999999999998776654
No 327
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.16 E-value=0.027 Score=63.52 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=29.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 361 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~ 361 (620)
+..|+|.|+||+||||+|++|+..+ +.+++.++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 4569999999999999999999998 888877753
No 328
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.11 E-value=0.033 Score=58.63 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+.++..++|.||+|+||||+++.||..+.
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 345677899999999999999999998763
No 329
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.09 E-value=0.016 Score=56.54 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=17.8
Q ss_pred CCCCceeeeecCCCChhHHHHHHHH-hhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIA-NEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA-~~l 352 (620)
+.++.-+.|.||+|+|||||++.|+ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3455678899999999999999999 765
No 330
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.06 E-value=0.02 Score=58.47 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=20.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.-|.|.||+|+||||+++.|+..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999876
No 331
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.03 E-value=0.012 Score=61.77 Aligned_cols=66 Identities=27% Similarity=0.367 Sum_probs=47.8
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccc
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 281 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~ 281 (620)
..++.|++.|.||+|+||..||++|++.++|+...... ..+. ..+...|+.+||..|+..+.|+..
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~---~~~~--~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI---ATIT--PDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---------------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh---cccc--ccccCCcCHHHHHHHHHhcCCCCC
Confidence 35778999999999999999999999999986432110 0010 012356899999999999988754
No 332
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.01 E-value=0.16 Score=58.06 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=33.5
Q ss_pred cccccccccchHHHHHHHHHh-hcCcCCCh-hhhhhcCCCCCceeeeecCCCChhHHHHHH
Q 007053 289 PNVNWEDIGGLENVKRELQET-VQYPVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 347 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~-l~~pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LAra 347 (620)
...+|++++-.+...+.+.+. +..+..+. +.+.. .+.....+++.||+|+|||+.+-.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHHH
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHH
Confidence 345677777555555555442 11111111 12222 234467899999999999998743
No 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.97 E-value=0.038 Score=65.57 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 297 GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 297 ~Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.|.+..+++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 67888888888776521 12467899999999999999999864
No 334
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.96 E-value=0.076 Score=50.68 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=41.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecCc-------ceeeeecccc-----ccchHHHHHhhhccCCeeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP-------ELLTMWFGES-----EANVREIFDKARQSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~-------~l~~~~~g~s-----e~~i~~if~~A~~~~p~IL~ 392 (620)
.+-.+++||.|+|||+.+-.+++.+ +..++.+... ..+....|.. -....++++.+.. ...+|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 4568899999999999888888766 4444443210 0111111111 0112356655542 347999
Q ss_pred eccchhH
Q 007053 393 FDELDSI 399 (620)
Q Consensus 393 iDEiD~l 399 (620)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9998775
No 335
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.90 E-value=0.1 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
++..+.+.|++|+||||++..+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999766
No 336
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.85 E-value=0.03 Score=53.08 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=27.4
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhceeeecCcc
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQANFISVKGPE 363 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~~~~i~i~~~~ 363 (620)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 77777776543
No 337
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.78 E-value=0.03 Score=54.91 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=27.3
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFIS 358 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~ 358 (620)
..|.|.|++|||||++++.||..++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999998865
No 338
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.70 E-value=0.032 Score=61.00 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+..+..++|.||+|+|||||++.|+..+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 45567799999999999999999998763
No 339
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.69 E-value=0.2 Score=49.35 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=30.7
Q ss_pred ccccccccchHHHHHHHHHhhc-CcCCCh-hhhhhcCCCCCceeeeecCCCChhHHHHH
Q 007053 290 NVNWEDIGGLENVKRELQETVQ-YPVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLAK 346 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~-~pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LAr 346 (620)
..+|++++-.....+.|.+.=- .|..+. +.+.. +...+.+++.+|+|+|||..+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPL--ALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEEcCCCCCchhHhH
Confidence 3467777766666666654311 111100 11111 1124679999999999998643
No 340
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.69 E-value=0.096 Score=53.51 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=25.7
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
+..+++.|++|+||||++..+|..+ +..+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5678899999999999999999776 33444443
No 341
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.67 E-value=0.21 Score=57.22 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=17.4
Q ss_pred CCceeeeecCCCChhHHHHH
Q 007053 327 PSKGVLFYGPPGCGKTLLAK 346 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAr 346 (620)
...++++.||+|+|||+.+.
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 46789999999999999873
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.66 E-value=0.038 Score=51.99 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=23.1
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
..+-+.|.|++|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 345689999999999999999998753
No 343
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.60 E-value=0.048 Score=64.32 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.9
Q ss_pred CceeeeecCCCChhHHHHHHHHh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~ 350 (620)
...++|.||.|+||||+.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999853
No 344
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.56 E-value=0.037 Score=61.20 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=25.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
+.-|+|.|.||+||||+++.|++.++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 456899999999999999999999866543
No 345
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.37 E-value=0.047 Score=60.73 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=24.8
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
..+..+.|.|++|||||||+++|+..++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4556789999999999999999999885
No 346
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.20 E-value=0.033 Score=54.93 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4556779999999999999999999755
No 347
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.18 E-value=0.21 Score=53.61 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
++..+++.|++|+||||++..+|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999876
No 348
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.17 E-value=0.049 Score=55.83 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+.-+.|.||+|+|||||++.|+..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999998765
No 349
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.13 E-value=0.034 Score=54.89 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=24.9
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||++.++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566779999999999999999999765
No 350
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.10 E-value=0.33 Score=49.30 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=32.2
Q ss_pred ccccccccchHHHHHHHHHhhcCcCCChh-----hhhhcCCCCCceeeeecCCCChhHHHH
Q 007053 290 NVNWEDIGGLENVKRELQETVQYPVEHPE-----KFEKFGMSPSKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l~~pl~~~~-----~~~~~g~~~~~~vLL~GppGtGKT~LA 345 (620)
..+|++++-.....+.|... . +..+- .+..+-..+++.+++++|+|||||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~-g--~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM-G--FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT-T--CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc-C--CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 34688887777777766552 1 12111 122221123578999999999999753
No 351
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.10 E-value=0.16 Score=59.03 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...++|.||.|+||||+.|.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999864
No 352
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.08 E-value=0.026 Score=56.24 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=25.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhh-hhcee
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANEC-QANFI 357 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l-~~~~i 357 (620)
.+.-|.|.|++|+||||+++.|+..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 35678999999999999999999988 44443
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.08 E-value=0.053 Score=55.89 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=24.2
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.++.-+.|.||+|+|||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4556788999999999999999998764
No 354
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.03 E-value=0.29 Score=51.15 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=30.0
Q ss_pred cccccccchHHHHHHHHHhhcC-cCCCh-hhhhhcCCCCCceeeeecCCCChhHHHHH
Q 007053 291 VNWEDIGGLENVKRELQETVQY-PVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLAK 346 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~-pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LAr 346 (620)
.+|++++--....+.|.+.--. |..+. +.+.. +-..+.+++.+|+|+|||+.+-
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP--CIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH--HhCCCCEEEECCCCCcccHHHH
Confidence 4567776666666666553111 11110 11111 1124569999999999998743
No 355
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.03 E-value=0.12 Score=54.68 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.6
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.....++|.||+|+|||+|++.+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 446779999999999999999999865
No 356
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.95 E-value=0.059 Score=60.29 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh----hceeeecC
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKG 361 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~----~~~i~i~~ 361 (620)
+..|+|.|+||+||||+|++|+..++ .+++.++.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 45689999999999999999999987 55666653
No 357
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.92 E-value=0.033 Score=54.48 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456678899999999999999999754
No 358
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.92 E-value=0.096 Score=48.70 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=29.5
Q ss_pred chHHHHHHHHHhhcCcCCChhhhhhcCCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 298 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 298 Gl~~~k~~L~e~l~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.+....+.+.+.+...-.. .......|++.|++|+|||+|+.++...
T Consensus 25 ~~~~l~~~l~~~~~~~~~~-------~~~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 25 KISQWREWIDEKLGGGSGG-------GGSYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp BCHHHHHHHHHHC---------------CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhcCC-------CCCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455566666555431111 1133457999999999999999999864
No 359
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.91 E-value=0.14 Score=62.90 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=25.2
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+++...+.|.||+|+|||||++.|.+.+
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 34566789999999999999999999876
No 360
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.86 E-value=0.12 Score=58.91 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=17.0
Q ss_pred CceeeeecCCCChhHHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLAK 346 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAr 346 (620)
.+++++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5789999999999999874
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.84 E-value=0.058 Score=55.39 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
++..+.|.||+|+||||+++.+|..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 456789999999999999999998763
No 362
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.84 E-value=0.071 Score=55.18 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=23.4
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
.+.-+.|.||+||||||+++.|+..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999998775
No 363
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.79 E-value=0.05 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
..++||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999999999874
No 364
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.79 E-value=0.061 Score=55.61 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
..++..++|.||+|+||||++..+|..+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999876
No 365
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.77 E-value=0.056 Score=58.84 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=25.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
+..|+|.|.||+|||++++.++..++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45799999999999999999999886544
No 366
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.77 E-value=0.11 Score=63.65 Aligned_cols=27 Identities=26% Similarity=0.640 Sum_probs=23.4
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
++...+-|.||+|+|||||++.|.+..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 455678999999999999999999865
No 367
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.76 E-value=0.056 Score=52.96 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.2
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.-|.|.|++|+||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999883
No 368
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.75 E-value=0.4 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.4
Q ss_pred CceeeeecCCCChhHHHHHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIA 349 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA 349 (620)
.+.+++.+|+|+|||..+-..+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 4679999999999998654433
No 369
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.69 E-value=0.26 Score=48.94 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.9
Q ss_pred CceeeeecCCCChhHHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLAK 346 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAr 346 (620)
.+.+++.+|+|+|||..+-
T Consensus 91 ~~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 91 GRDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp TCCCEECCCTTSCHHHHHH
T ss_pred CCcEEEEccCCCCchHHHH
Confidence 3679999999999998643
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.66 E-value=0.051 Score=53.79 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=24.0
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+ ..+.|.||+|+|||||.+.++...
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456 778899999999999999999765
No 371
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.64 E-value=0.07 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.2
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.+.|.|++|+|||+|+..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4688999999999999999998763
No 372
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.58 E-value=0.046 Score=54.85 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||++.++...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678899999999999999999765
No 373
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.58 E-value=0.044 Score=54.23 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=24.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566779999999999999999999765
No 374
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.46 E-value=0.051 Score=57.16 Aligned_cols=28 Identities=32% Similarity=0.634 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+..-+.|.||+|||||||.+.|+...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3456678899999999999999999765
No 375
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.43 E-value=0.057 Score=54.27 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=24.1
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.+.+...+.|.||+|+|||||++.++..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677999999999999999999985
No 376
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.37 E-value=0.045 Score=53.21 Aligned_cols=28 Identities=39% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456678899999999999999999765
No 377
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.36 E-value=0.05 Score=54.50 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||++.++...
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34566779999999999999999999754
No 378
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.36 E-value=0.087 Score=51.70 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=21.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
+.-|.|.||+|+||||+++.|+..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4568899999999999999999988543
No 379
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.35 E-value=0.054 Score=53.86 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.5
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
+.+...+.|.||+|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445667899999999999999999985
No 380
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.35 E-value=0.047 Score=53.55 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||.|+|||||.+.++...
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556778999999999999999999765
No 381
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.29 E-value=0.051 Score=54.78 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=24.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||++.|+...
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566779999999999999999999765
No 382
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.26 E-value=0.053 Score=54.47 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||++.++...
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34556678999999999999999999765
No 383
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.26 E-value=0.048 Score=54.47 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456678899999999999999999765
No 384
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.24 E-value=0.048 Score=54.16 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||++.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456678999999999999999999765
No 385
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.22 E-value=0.4 Score=50.23 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=31.3
Q ss_pred cccccccchHHHHHHHHHhhc-CcCCCh-hhhhhcCCCCCceeeeecCCCChhHHHHHH
Q 007053 291 VNWEDIGGLENVKRELQETVQ-YPVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 347 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~-~pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LAra 347 (620)
.+|++++-.+...+.|.+.=- .|..+. +.+..+ ...+.+++.+|+|+|||..+-.
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i--~~~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI--IKGRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCCchHHHHH
Confidence 467787766666666654311 111111 111111 1246799999999999976543
No 386
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.21 E-value=0.44 Score=49.67 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=31.4
Q ss_pred ccccccccchHHHHHHHHHhh-cCcCCCh-hhhhhcCCCCCceeeeecCCCChhHHHHHH
Q 007053 290 NVNWEDIGGLENVKRELQETV-QYPVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 347 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l-~~pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LAra 347 (620)
..+|++++-.....+.|.+.= ..|..+. +.+..+ ...+.+++.+|+|+|||+.+-.
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA--ITGRDILARAKNGTGKTAAFVI 77 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HHTCCEEEECCTTSCHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCCEEEECCCCcHHHHHHHH
Confidence 456888876666666666521 1111110 111111 1236799999999999986543
No 387
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.18 E-value=0.05 Score=53.77 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456678899999999999999999765
No 388
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.14 E-value=0.051 Score=54.98 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.0
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||++.++...
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4456678999999999999999999765
No 389
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.12 E-value=0.11 Score=50.70 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhc
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQAN 355 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~ 355 (620)
+.-|.|.|++|+||||+++.++..++.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5568899999999999999999998763
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.11 E-value=0.058 Score=56.47 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.||...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3456678899999999999999999764
No 391
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.11 E-value=0.081 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.5
Q ss_pred eeeeecCCCChhHHHHHHHHhhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~ 353 (620)
-.+|+||.|+|||+|+++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998764
No 392
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.10 E-value=0.065 Score=56.43 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.8
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.||...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3455678899999999999999999764
No 393
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.10 E-value=0.085 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
+.-|.|.|++|+||||+++.|+..+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999998853
No 394
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.10 E-value=0.47 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=16.5
Q ss_pred CceeeeecCCCChhHHHHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAI 348 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAral 348 (620)
.+.+++.+|+|+|||..+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 357999999999999944333
No 395
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.09 E-value=0.1 Score=51.27 Aligned_cols=45 Identities=40% Similarity=0.494 Sum_probs=36.5
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhh
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTAL 273 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al 273 (620)
.+..||..|+||+|+||..+|++|++.|.++.. -.|+.+||..++
T Consensus 209 ~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~-----------------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 209 DLALLAKRTPGFVGADLENLLNEAALLAAREGR-----------------RKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-----------------CCcCHHHHHHHh
Confidence 467899999999999999999999999886421 246777887765
No 396
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.07 E-value=0.065 Score=56.37 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3456678899999999999999999754
No 397
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.01 E-value=0.067 Score=56.53 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.||...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4456678899999999999999999764
No 398
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.01 E-value=0.061 Score=56.48 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.|+...
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456678899999999999999999764
No 399
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.98 E-value=0.055 Score=53.88 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556678999999999999999999764
No 400
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.97 E-value=0.054 Score=54.46 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.1
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||++.++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4556778999999999999999999765
No 401
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.97 E-value=0.06 Score=53.82 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||.|+|||||.+.++...
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34556678999999999999999999764
No 402
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.96 E-value=0.059 Score=54.11 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||.+.++...
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34556678899999999999999999754
No 403
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.83 E-value=0.55 Score=48.89 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=32.5
Q ss_pred ccccccccchHHHHHHHHHhh-cCcCCCh-hhhhhcCCCCCceeeeecCCCChhHHHH
Q 007053 290 NVNWEDIGGLENVKRELQETV-QYPVEHP-EKFEKFGMSPSKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 290 ~v~~~di~Gl~~~k~~L~e~l-~~pl~~~-~~~~~~g~~~~~~vLL~GppGtGKT~LA 345 (620)
..+|++++-.....+.|.+.= ..|..+. +.+..+-...++.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 346778776677777776531 1111111 1122211123578999999999999864
No 404
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.82 E-value=0.09 Score=55.10 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
...+.|.||+|+|||||++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567899999999999999999987654
No 405
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.80 E-value=0.076 Score=58.42 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=24.5
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
...|+|.|.+||||||++++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999974
No 406
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.77 E-value=0.059 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4456678999999999999999999765
No 407
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.74 E-value=0.061 Score=50.40 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.8
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
+.+.|.|++|+|||||++.|+..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35889999999999999999988754
No 408
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.68 E-value=0.069 Score=56.42 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.||...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3456678899999999999999999764
No 409
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.67 E-value=0.061 Score=53.63 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456678999999999999999999765
No 410
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.64 E-value=0.071 Score=51.54 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
+...+.|.||+|+|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3556889999999999999999975
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.58 E-value=0.12 Score=53.82 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=28.7
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh---hhceeeec
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 360 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~ 360 (620)
|+.+..-++|.|+||+|||+|+..+|... +.++.+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56677789999999999999999998764 34444443
No 412
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.55 E-value=0.16 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|.|.|+||+|||+|.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 413
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.50 E-value=0.16 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l 352 (620)
...|.|.|+||+|||+|+..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998775
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.46 E-value=0.061 Score=56.45 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.9
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|||||||.+.||...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456678899999999999999999754
No 415
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.45 E-value=0.6 Score=50.30 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=31.0
Q ss_pred cccccccchHHHHHHHHHhhcCcCCCh---hhhhhcCCCCCceeeeecCCCChhHHHH
Q 007053 291 VNWEDIGGLENVKRELQETVQYPVEHP---EKFEKFGMSPSKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 291 v~~~di~Gl~~~k~~L~e~l~~pl~~~---~~~~~~g~~~~~~vLL~GppGtGKT~LA 345 (620)
.+|++++-.....+.|.+. .+.-..+ +.+..+-...++.+|++||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM-GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 3677777666666666542 1111111 1122221123578999999999999863
No 416
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.42 E-value=0.13 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
...+++||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999877776544
No 417
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.41 E-value=0.2 Score=48.72 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=38.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh---hhceeeecCc--------ceeeeecccc-----ccchHHHHHhhhccCCeeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP--------ELLTMWFGES-----EANVREIFDKARQSAPCVLF 392 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~~--------~l~~~~~g~s-----e~~i~~if~~A~~~~p~IL~ 392 (620)
.-.+++||.|+|||+.+-.++... +..++.+... .+.+.. |.. .....++++.+.. ...+|+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~~-~~dvVi 106 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHITE-EMDVIA 106 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCCS-SCCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHhc-CCCEEE
Confidence 445689999999999888777665 4445444321 111111 110 0112345554442 357999
Q ss_pred eccchhH
Q 007053 393 FDELDSI 399 (620)
Q Consensus 393 iDEiD~l 399 (620)
|||+..+
T Consensus 107 IDEaQF~ 113 (214)
T 2j9r_A 107 IDEVQFF 113 (214)
T ss_dssp ECCGGGS
T ss_pred EECcccC
Confidence 9999875
No 418
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.37 E-value=0.28 Score=52.88 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=20.7
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3456789999999999999887753
No 419
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.29 E-value=0.081 Score=56.23 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|||||||.+.|+...
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34566779999999999999999999743
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.22 E-value=0.1 Score=52.10 Aligned_cols=51 Identities=43% Similarity=0.591 Sum_probs=42.3
Q ss_pred cchhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCc
Q 007053 211 GGVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNP 278 (620)
Q Consensus 211 g~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~p 278 (620)
..+..++..|.||+|+||..||++|++.|+++... .|+.+||..|+..+.+
T Consensus 210 ~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~-----------------~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 210 VNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD-----------------YVTMDDFRKAVEKIME 260 (285)
T ss_dssp CCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS-----------------SBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC-----------------cCCHHHHHHHHHHHHh
Confidence 45788999999999999999999999999986432 4778888888876643
No 421
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.17 E-value=0.1 Score=50.63 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=26.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeeec
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISVK 360 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i~ 360 (620)
..|-|+|..||||||+++.++. +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3588999999999999999988 888877644
No 422
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.16 E-value=0.072 Score=54.76 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=25.2
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||++.|+..+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44567789999999999999999999865
No 423
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.16 E-value=0.22 Score=59.38 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.5
Q ss_pred CceeeeecCCCChhHHHHHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIA 349 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA 349 (620)
...++|.||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999984
No 424
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.05 E-value=0.11 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.0
Q ss_pred eeeeecCCCChhHHHHHHHHhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~ 351 (620)
.+++.|++|+|||+|++++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 425
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.05 E-value=0.12 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l 352 (620)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 426
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.93 E-value=0.12 Score=51.02 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
+.-|.|.|++|+||||+++.|+..+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456889999999999999999998854
No 427
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.89 E-value=0.13 Score=50.27 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
.+.-|.|.|++|+||||+++.++..++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3556888999999999999999998765
No 428
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.87 E-value=0.11 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=21.0
Q ss_pred eeeeecCCCChhHHHHHHHHhhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999765
No 429
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.86 E-value=0.083 Score=53.83 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||.|+|||||.+.++...
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34556678999999999999999999765
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=48.60 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.....|+|.|++|+|||+|++++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999753
No 431
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.78 E-value=0.14 Score=48.97 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.8
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~ 353 (620)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998763
No 432
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.72 E-value=0.12 Score=46.41 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=21.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.-.|++.|++|+|||+|++++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999864
No 433
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.71 E-value=0.12 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 434
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.64 E-value=0.11 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.0
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 435
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.61 E-value=0.069 Score=50.51 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=23.7
Q ss_pred cCCCCCceeeeecCCCChhHHHHHHHHhh
Q 007053 323 FGMSPSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 323 ~g~~~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
+.+.+...+.|.|++|+|||+|.++++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34455667999999999999999998754
No 436
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.58 E-value=0.098 Score=52.49 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=23.8
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+. ...+.|.||+|+|||||.+.++...
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 5668899999999999999999765
No 437
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.56 E-value=0.6 Score=45.33 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.4
Q ss_pred CceeeeecCCCChhHHHH
Q 007053 328 SKGVLFYGPPGCGKTLLA 345 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LA 345 (620)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999853
No 438
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.11 Score=56.31 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 325 MSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 325 ~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+...+.|.||+|+|||||++.|+...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3456779999999999999999999865
No 439
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.41 E-value=0.31 Score=48.00 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=21.2
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999999854
No 440
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.38 E-value=1.4 Score=46.96 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=31.2
Q ss_pred cccccccccchHHHHHHHHHhhcCcCCChhhhhhcC---CCCCceeeeecCCCChhHHH
Q 007053 289 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFG---MSPSKGVLFYGPPGCGKTLL 344 (620)
Q Consensus 289 p~v~~~di~Gl~~~k~~L~e~l~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~L 344 (620)
|-.+|++++-.+.+.+.|.+. . +..+.-++... +...+.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~-g--~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS-G--YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT-T--CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc-C--CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 445788887666666666542 1 11121111111 12347899999999999984
No 441
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.24 E-value=0.17 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.5
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
....|++.|++|+|||+|++++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999753
No 442
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.16 E-value=0.14 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 443
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.13 E-value=0.15 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
-.|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998854
No 444
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.13 E-value=0.13 Score=54.09 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.3
Q ss_pred CCCCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 324 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 324 g~~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.+.+...+.|.||+|+|||||++.++...
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34556678999999999999999999754
No 445
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.12 E-value=0.22 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l 352 (620)
...++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999765
No 446
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.08 E-value=0.18 Score=45.95 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.6
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
....|++.|++|+|||+|++++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557999999999999999999763
No 447
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.03 E-value=0.15 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
++.-+.|.||.|+||||+++.|+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999987
No 448
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.96 E-value=0.15 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred eeeeecCCCChhHHHHHHHHhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~ 351 (620)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 449
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.92 E-value=0.14 Score=45.97 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=20.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
-.|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999854
No 450
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.90 E-value=0.22 Score=57.92 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
...+++||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999887776554
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.90 E-value=0.12 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.9
Q ss_pred eeeeecCCCChhHHHHHHHHhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~ 351 (620)
.|+|.|++|+|||+|++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 452
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.85 E-value=0.19 Score=52.18 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l 352 (620)
.....+.|.||||+|||||.++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678899999999999999999765
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.82 E-value=0.18 Score=48.96 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.4
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
+.-|.|.|++|+||||+++.|+..+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345889999999999999999998854
No 454
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.80 E-value=0.25 Score=49.06 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=20.0
Q ss_pred eeeeecCCCChhHHHHHHHHhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~ 351 (620)
.|+|.|+||+|||+|.+++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999864
No 455
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.80 E-value=0.14 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..+.|.|++|+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.72 E-value=0.19 Score=46.54 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
....|++.|++|+|||+|++++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999864
No 457
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.71 E-value=0.16 Score=46.04 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|+|.|++|+|||+|++++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999854
No 458
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.66 E-value=0.18 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
-.|++.|++|+|||+|++++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 459
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.62 E-value=0.17 Score=46.07 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|++.|++|+|||+|++++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999998764
No 460
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.61 E-value=0.18 Score=45.87 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|++.|++|+|||+|++++...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999853
No 461
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.55 E-value=0.61 Score=45.79 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=35.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhh---hhceeeecC-------cceeeeeccccc-----cchHHHHHhhhccCCeeee
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG-------PELLTMWFGESE-----ANVREIFDKARQSAPCVLF 392 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l---~~~~i~i~~-------~~l~~~~~g~se-----~~i~~if~~A~~~~p~IL~ 392 (620)
..-.+++||.|+|||+.+-..+... +..++.+.. ..+.+.. |... ....++++.+ ....+|+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvVi 95 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIG 95 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEE
Confidence 4457889999999997665555443 334433321 1111111 1110 1113345444 3357999
Q ss_pred eccchhH
Q 007053 393 FDELDSI 399 (620)
Q Consensus 393 iDEiD~l 399 (620)
|||+.-+
T Consensus 96 IDEaQF~ 102 (234)
T 2orv_A 96 IDEGQFF 102 (234)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999775
No 462
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.51 E-value=0.21 Score=53.87 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
.....+.|.||+|||||||++.|++....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 44567899999999999999999987643
No 463
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.46 E-value=0.17 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 464
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.43 E-value=0.19 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|++.|++|+|||+|++++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999854
No 465
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.41 E-value=0.22 Score=55.29 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.9
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
+..|+|.|++|+||||+++.|+..++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 456899999999999999999998764
No 466
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.38 E-value=0.21 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.5
Q ss_pred CCCceeeeecCCCChhHHHHHHHHh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~ 350 (620)
.....|++.|++|+|||+|++.+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999864
No 467
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.34 E-value=0.29 Score=48.68 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|+|.|+||+|||+|.+++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999863
No 468
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.33 E-value=0.17 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.8
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|+|.|++|+|||+|+++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 469
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.32 E-value=0.2 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.7
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
....|+|.|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 470
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.28 E-value=0.18 Score=45.35 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999853
No 471
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.23 E-value=0.39 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
+.+.|.|+||+|||+|.++++...
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 348899999999999999998643
No 472
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.19 E-value=0.27 Score=49.07 Aligned_cols=45 Identities=40% Similarity=0.494 Sum_probs=36.3
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhh
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTAL 273 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al 273 (620)
.+..+|..|+||+|+||..+|++|++.|.++.. -.|+.+||..|+
T Consensus 233 ~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~-----------------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 233 DLALLAKRTPGFVGADLENLLNEAALLAAREGR-----------------RKITMKDLEEAA 277 (278)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------CSBCHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCcCHHHHHHHh
Confidence 567899999999999999999999998886421 246777877765
No 473
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.18 E-value=0.23 Score=48.89 Aligned_cols=48 Identities=38% Similarity=0.430 Sum_probs=39.7
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccC
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 276 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~ 276 (620)
.+..+|..|+||+++||..+|++|++.|.++.. -.|+.+||..|+..+
T Consensus 205 ~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~-----------------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 205 DAAIIARGTPGFSGADLANLVNEAALFAARGNK-----------------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHHHH
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CcccHHHHHHHHHHH
Confidence 466789999999999999999999999987532 257888998888754
No 474
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=89.13 E-value=0.22 Score=53.61 Aligned_cols=31 Identities=35% Similarity=0.316 Sum_probs=24.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhhhhhceeee
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANECQANFISV 359 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l~~~~i~i 359 (620)
..++|++|+|+|||..+-.++...+...+.+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl 139 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIV 139 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3599999999999999888777766555444
No 475
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=89.10 E-value=0.69 Score=43.53 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=45.9
Q ss_pred CCCceeeeHhhhcccccccCCeEEEeecCCCCCcceEEeeccCCc--ccccccchhhhhhhhhhhhhccccccCCeEEEe
Q 007053 83 EEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDT--IEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVR 160 (620)
Q Consensus 83 ~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~gd~i~v~ 160 (620)
.+++++||+.++.-|++..||.|+|+.- . .+....+|...+ -.+...-..+.++++.+ .+..||.|.|.
T Consensus 23 ~~~~vrL~~~~~~~L~~~~gd~VeI~g~-~---~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~-----gv~~Gd~V~V~ 93 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLHLLQNQAIEVASD-H---QPTYLSWVEGRHFNDQSENVAEINRQVGQKL-----GLSSGDQVFLR 93 (179)
T ss_dssp SSSCEEECHHHHHHTTCCTTCCEEEESS-S---CCEEECEEECSSCC---CCEEEEEHHHHHHT-----TCCTTCEEEEE
T ss_pred CCcEEECCHHHHHHcCCCCCcEEEEEeC-C---eeEEEEEECCCCcccCCCCEEEECHHHHhHC-----CCCCCCEEEEE
Confidence 6799999999999999999999999972 1 233334443221 01111122345666444 59999999985
Q ss_pred c
Q 007053 161 G 161 (620)
Q Consensus 161 ~ 161 (620)
.
T Consensus 94 ~ 94 (179)
T 1wlf_A 94 P 94 (179)
T ss_dssp E
T ss_pred E
Confidence 3
No 476
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.09 E-value=0.2 Score=44.89 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 477
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.09 E-value=0.2 Score=51.42 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=21.1
Q ss_pred ceeeeecCCCChhHHHHHHHHhhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANEC 352 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~l 352 (620)
.-++|.|+.|+|||||++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 458899999999999999999654
No 478
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.08 E-value=0.21 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.0
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.-.|++.|++|+|||+|++++...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999854
No 479
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.07 E-value=0.2 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.06 E-value=0.18 Score=46.29 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.2
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...++|.|++|+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
No 481
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.00 E-value=0.2 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|+|.|++|+|||+|++++...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999863
No 482
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.98 E-value=0.18 Score=45.41 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.1
Q ss_pred eeeeecCCCChhHHHHHHHHh
Q 007053 330 GVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~ 350 (620)
.|+|.|++|+|||+|++++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 483
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.90 E-value=0.21 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred eeeeecCCCChhHHHHHHHHhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~ 351 (620)
.|++.|++|+|||+|++++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 484
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.88 E-value=0.19 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.0
Q ss_pred CCceeeeecCCCChhHHHHHHHHh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIAN 350 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~ 350 (620)
....|++.|++|+|||+|++++..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998874
No 485
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.82 E-value=0.29 Score=56.88 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.0
Q ss_pred eeeeecCCCChhHHHHHHHHhh
Q 007053 330 GVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~ 351 (620)
.+|+.||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999987766543
No 486
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.74 E-value=0.22 Score=51.99 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCceeeeecCCCChhHHHHHHHHhhhhh
Q 007053 326 SPSKGVLFYGPPGCGKTLLAKAIANECQA 354 (620)
Q Consensus 326 ~~~~~vLL~GppGtGKT~LAralA~~l~~ 354 (620)
.....+.|.||+|+|||||++.|++....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34567999999999999999999998743
No 487
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.74 E-value=0.2 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCCce--eeeecCCCChhHHHHHHHHhh
Q 007053 326 SPSKG--VLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 326 ~~~~~--vLL~GppGtGKT~LAralA~~ 351 (620)
.++.. +.|.||+|+|||||+++|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44455 889999999999999999875
No 488
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.67 E-value=0.25 Score=45.68 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
.-.|++.|++|+|||+|++++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999865
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.66 E-value=0.14 Score=50.66 Aligned_cols=55 Identities=33% Similarity=0.427 Sum_probs=43.3
Q ss_pred chhhhhccccCcchhhHHHHhHHHHHHHHHhhccccccCCccccHHHHhhhccChHHHHHhhccCCcccccc
Q 007053 212 GVRKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE 283 (620)
Q Consensus 212 ~l~~lA~~t~gf~GaDl~~l~~eAa~~alrr~~~~~~~~~~~~~~~~l~~~~v~~~df~~al~~~~ps~~r~ 283 (620)
.+..||..|.||+|+||..+|++|++.|+++. .-.|+.+||..++..+.|+..++
T Consensus 206 ~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 206 NLQEVAKLTAGLAGADLANIINEAALLAGRNN-----------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp CTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-----------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 46789999999999999999999998776421 12578889999999888876543
No 490
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.65 E-value=0.26 Score=45.52 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.3
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|+|.|++|+|||+|.+++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.60 E-value=0.11 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred eeeecCCCChhHHHHHHHHhhhh
Q 007053 331 VLFYGPPGCGKTLLAKAIANECQ 353 (620)
Q Consensus 331 vLL~GppGtGKT~LAralA~~l~ 353 (620)
+.|.||+|+|||+|.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 57899999999999999998663
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.57 E-value=0.23 Score=51.15 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.6
Q ss_pred CceeeeecCCCChhHHHHHHHHhhhhhce
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANECQANF 356 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~l~~~~ 356 (620)
..++||.|++|+|||++|.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 578999999999999999999875 4443
No 493
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.57 E-value=0.19 Score=46.23 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCceeeeecCCCChhHHHHHHHHhh
Q 007053 327 PSKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 327 ~~~~vLL~GppGtGKT~LAralA~~ 351 (620)
....|++.|++|+|||+|++++...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999854
No 494
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.54 E-value=0.22 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.1
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|+|.|++|+|||+|++++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356999999999999999999864
No 495
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.52 E-value=0.23 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.2
Q ss_pred CceeeeecCCCChhHHHHHHHHhh
Q 007053 328 SKGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 328 ~~~vLL~GppGtGKT~LAralA~~ 351 (620)
...|++.|++|+|||+|++++...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 496
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.49 E-value=0.22 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|++.|++|+|||+|++++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 497
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.47 E-value=0.36 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|.|.|+||+|||+|.+++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999863
No 498
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.45 E-value=0.21 Score=49.45 Aligned_cols=28 Identities=21% Similarity=0.155 Sum_probs=24.3
Q ss_pred eeeeecCCCChhHHHHHHHHhhhhhcee
Q 007053 330 GVLFYGPPGCGKTLLAKAIANECQANFI 357 (620)
Q Consensus 330 ~vLL~GppGtGKT~LAralA~~l~~~~i 357 (620)
-|.|+|++|||||++++.+...+|++++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 3779999999999999999988887653
No 499
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.43 E-value=0.22 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
..|++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999865
No 500
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.39 E-value=0.22 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.6
Q ss_pred ceeeeecCCCChhHHHHHHHHhh
Q 007053 329 KGVLFYGPPGCGKTLLAKAIANE 351 (620)
Q Consensus 329 ~~vLL~GppGtGKT~LAralA~~ 351 (620)
-.|+|.|++|+|||+|++++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
Done!