Query 007054
Match_columns 620
No_of_seqs 337 out of 2900
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 18:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 1.5E-96 3E-101 812.6 48.9 606 1-619 1-656 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 3.5E-46 7.5E-51 366.7 25.2 239 4-254 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 5.3E-46 1.2E-50 382.6 25.8 271 226-498 1-283 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 2.3E-31 5.1E-36 273.4 33.9 281 36-322 306-599 (980)
5 smart00302 GED Dynamin GTPase 99.9 5.4E-24 1.2E-28 178.2 12.6 89 526-616 4-92 (92)
6 PF00350 Dynamin_N: Dynamin fa 99.9 2.5E-22 5.5E-27 189.6 16.6 167 41-217 1-168 (168)
7 PF02212 GED: Dynamin GTPase e 99.9 1.5E-21 3.2E-26 164.2 11.5 88 527-616 5-92 (92)
8 COG1159 Era GTPase [General fu 99.8 2E-18 4.3E-23 170.2 10.4 182 38-282 6-190 (298)
9 PRK09866 hypothetical protein; 99.7 1.4E-13 3.1E-18 148.7 42.1 211 39-259 70-348 (741)
10 PF02421 FeoB_N: Ferrous iron 99.7 5.8E-18 1.3E-22 155.4 6.3 149 40-255 2-152 (156)
11 COG0486 ThdF Predicted GTPase 99.7 2.5E-15 5.5E-20 156.7 19.8 179 6-259 193-371 (454)
12 TIGR00436 era GTP-binding prot 99.7 6.2E-16 1.4E-20 157.5 12.8 162 40-265 2-165 (270)
13 COG1160 Predicted GTPases [Gen 99.6 1.6E-15 3.4E-20 157.9 13.5 156 39-259 4-160 (444)
14 PRK00089 era GTPase Era; Revie 99.6 3.4E-15 7.4E-20 154.0 13.4 161 39-260 6-167 (292)
15 COG1084 Predicted GTPase [Gene 99.6 1E-14 2.2E-19 145.1 12.1 158 6-223 136-296 (346)
16 TIGR03156 GTP_HflX GTP-binding 99.6 9.5E-14 2.1E-18 145.8 17.3 127 37-222 188-316 (351)
17 PRK15494 era GTPase Era; Provi 99.5 4.5E-14 9.9E-19 147.9 12.4 199 40-304 54-253 (339)
18 COG0218 Predicted GTPase [Gene 99.5 8.3E-14 1.8E-18 130.6 12.1 128 37-224 23-152 (200)
19 COG1160 Predicted GTPases [Gen 99.5 3.3E-14 7.2E-19 148.1 10.3 157 37-251 177-335 (444)
20 PRK12298 obgE GTPase CgtA; Rev 99.5 1.3E-13 2.8E-18 146.4 14.7 169 38-268 159-337 (390)
21 PRK11058 GTPase HflX; Provisio 99.5 2.5E-13 5.3E-18 145.9 16.2 127 37-222 196-324 (426)
22 PRK12299 obgE GTPase CgtA; Rev 99.5 1.8E-13 3.9E-18 142.5 14.2 161 37-257 157-321 (335)
23 COG0370 FeoB Fe2+ transport sy 99.5 2E-13 4.3E-18 148.5 14.0 154 39-259 4-159 (653)
24 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.7E-12 3.6E-17 140.3 20.7 155 36-259 201-355 (442)
25 PRK05291 trmE tRNA modificatio 99.5 1.6E-12 3.4E-17 141.4 19.9 153 37-261 214-367 (449)
26 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 4.9E-13 1.1E-17 129.6 12.9 124 40-223 2-132 (196)
27 cd01878 HflX HflX subfamily. 99.4 9.9E-13 2.1E-17 128.2 13.9 129 36-223 39-169 (204)
28 cd04163 Era Era subfamily. Er 99.4 7.5E-13 1.6E-17 123.5 12.4 124 38-222 3-126 (168)
29 PF01926 MMR_HSR1: 50S ribosom 99.4 7.1E-13 1.5E-17 117.0 11.5 115 40-216 1-116 (116)
30 KOG1423 Ras-like GTPase ERA [C 99.4 2.2E-13 4.8E-18 133.5 8.6 168 39-264 73-271 (379)
31 TIGR03598 GTPase_YsxC ribosome 99.4 9.2E-13 2E-17 125.7 12.9 124 36-222 16-144 (179)
32 PRK00454 engB GTP-binding prot 99.4 1.1E-12 2.4E-17 126.8 11.8 125 36-223 22-151 (196)
33 COG3596 Predicted GTPase [Gene 99.4 2.7E-12 5.9E-17 125.1 14.1 126 37-225 37-166 (296)
34 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 1.9E-12 4.2E-17 121.6 12.0 117 39-222 1-117 (168)
35 cd01898 Obg Obg subfamily. Th 99.4 2.2E-12 4.7E-17 121.6 12.0 125 40-224 2-131 (170)
36 PRK12297 obgE GTPase CgtA; Rev 99.4 3.3E-12 7.2E-17 136.4 14.5 122 38-220 158-287 (424)
37 cd01897 NOG NOG1 is a nucleola 99.4 3.2E-12 6.9E-17 120.3 12.8 25 39-63 1-25 (168)
38 COG2262 HflX GTPases [General 99.4 5.5E-12 1.2E-16 129.6 15.3 184 10-258 165-350 (411)
39 TIGR03594 GTPase_EngA ribosome 99.4 3.7E-12 8E-17 138.8 15.0 126 37-221 171-297 (429)
40 PRK12296 obgE GTPase CgtA; Rev 99.4 2.2E-12 4.7E-17 139.4 12.8 125 37-222 158-299 (500)
41 TIGR02729 Obg_CgtA Obg family 99.4 2.6E-12 5.7E-17 133.7 13.1 126 37-222 156-288 (329)
42 PRK03003 GTP-binding protein D 99.4 2.8E-12 6.2E-17 140.7 13.7 126 37-222 210-337 (472)
43 PRK03003 GTP-binding protein D 99.4 5.5E-12 1.2E-16 138.4 15.5 157 37-259 37-194 (472)
44 cd01895 EngA2 EngA2 subfamily. 99.4 5.5E-12 1.2E-16 118.7 13.2 128 38-223 2-129 (174)
45 TIGR03594 GTPase_EngA ribosome 99.4 4.8E-12 1E-16 137.9 13.8 152 40-258 1-154 (429)
46 PRK00093 GTP-binding protein D 99.4 5.9E-12 1.3E-16 137.4 13.9 127 37-222 172-299 (435)
47 cd04112 Rab26 Rab26 subfamily. 99.4 9E-12 1.9E-16 120.2 13.5 115 140-267 50-166 (191)
48 PRK09554 feoB ferrous iron tra 99.3 1.8E-11 3.8E-16 140.3 17.5 159 39-260 4-164 (772)
49 cd01868 Rab11_like Rab11-like. 99.3 1.3E-11 2.9E-16 115.7 13.2 154 38-257 3-158 (165)
50 PRK00093 GTP-binding protein D 99.3 1.1E-11 2.4E-16 135.2 14.4 154 38-258 1-156 (435)
51 cd01866 Rab2 Rab2 subfamily. 99.3 1.7E-11 3.8E-16 115.5 13.8 154 37-257 3-159 (168)
52 cd01861 Rab6 Rab6 subfamily. 99.3 1.4E-11 3E-16 115.0 12.6 148 40-254 2-152 (161)
53 cd01853 Toc34_like Toc34-like 99.3 1.9E-11 4.1E-16 122.2 13.9 129 37-224 30-166 (249)
54 cd01867 Rab8_Rab10_Rab13_like 99.3 2E-11 4.4E-16 114.9 13.4 154 38-257 3-158 (167)
55 PRK04213 GTP-binding protein; 99.3 1.4E-11 2.9E-16 119.9 12.6 123 37-222 8-145 (201)
56 cd04164 trmE TrmE (MnmE, ThdF, 99.3 2.9E-11 6.2E-16 111.9 14.1 121 40-223 3-123 (157)
57 cd00880 Era_like Era (E. coli 99.3 2.6E-11 5.7E-16 111.7 13.3 78 139-224 44-121 (163)
58 KOG1191 Mitochondrial GTPase [ 99.3 9.3E-11 2E-15 122.4 18.3 128 37-224 267-406 (531)
59 cd01865 Rab3 Rab3 subfamily. 99.3 2.5E-11 5.3E-16 114.1 13.0 105 140-257 50-156 (165)
60 cd01879 FeoB Ferrous iron tran 99.3 1.2E-11 2.7E-16 114.7 10.6 103 140-254 43-147 (158)
61 PRK09518 bifunctional cytidyla 99.3 2.2E-11 4.8E-16 140.0 14.9 126 37-222 449-576 (712)
62 cd01894 EngA1 EngA1 subfamily. 99.3 7.8E-12 1.7E-16 115.8 9.1 77 140-223 45-121 (157)
63 cd04142 RRP22 RRP22 subfamily. 99.3 2.6E-11 5.6E-16 117.6 13.0 159 40-257 2-167 (198)
64 KOG0448 Mitofusin 1 GTPase, in 99.3 2.8E-10 6.1E-15 122.8 21.1 184 11-230 95-284 (749)
65 TIGR00991 3a0901s02IAP34 GTP-b 99.3 5.8E-11 1.2E-15 120.3 15.0 142 11-223 21-169 (313)
66 cd04104 p47_IIGP_like p47 (47- 99.3 3.5E-11 7.6E-16 116.7 12.9 121 39-222 2-122 (197)
67 cd04122 Rab14 Rab14 subfamily. 99.3 4.4E-11 9.6E-16 112.4 13.3 152 39-256 3-156 (166)
68 PF04548 AIG1: AIG1 family; I 99.3 1E-11 2.2E-16 121.8 9.2 148 40-247 2-163 (212)
69 cd01881 Obg_like The Obg-like 99.3 1.1E-11 2.4E-16 117.3 9.2 80 139-224 43-137 (176)
70 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 5.2E-11 1.1E-15 111.9 13.6 105 140-257 51-157 (166)
71 PRK09518 bifunctional cytidyla 99.3 4E-11 8.7E-16 137.9 15.3 159 36-260 273-432 (712)
72 cd04171 SelB SelB subfamily. 99.3 3.3E-11 7.1E-16 112.6 11.7 99 139-254 50-156 (164)
73 cd04113 Rab4 Rab4 subfamily. 99.3 5.1E-11 1.1E-15 111.2 12.6 151 40-256 2-154 (161)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.3 4.8E-11 1E-15 111.6 12.4 102 140-255 50-155 (164)
75 cd00154 Rab Rab family. Rab G 99.3 4.3E-11 9.4E-16 110.5 11.7 149 39-254 1-152 (159)
76 cd04101 RabL4 RabL4 (Rab-like4 99.3 9.3E-11 2E-15 109.8 13.9 102 140-255 52-155 (164)
77 smart00175 RAB Rab subfamily o 99.3 8.1E-11 1.8E-15 110.0 13.3 102 140-255 49-153 (164)
78 cd04119 RJL RJL (RabJ-Like) su 99.2 8.1E-11 1.8E-15 110.3 13.2 151 40-256 2-159 (168)
79 cd01876 YihA_EngB The YihA (En 99.2 3E-11 6.6E-16 112.9 10.0 78 141-223 46-126 (170)
80 cd01860 Rab5_related Rab5-rela 99.2 8.1E-11 1.8E-15 110.0 12.8 149 40-254 3-153 (163)
81 cd01862 Rab7 Rab7 subfamily. 99.2 7.3E-11 1.6E-15 111.3 12.3 153 40-258 2-161 (172)
82 cd04157 Arl6 Arl6 subfamily. 99.2 8.6E-11 1.9E-15 109.7 12.6 105 139-256 44-156 (162)
83 cd04139 RalA_RalB RalA/RalB su 99.2 8.7E-11 1.9E-15 109.7 12.6 150 40-256 2-154 (164)
84 cd01864 Rab19 Rab19 subfamily. 99.2 1.1E-10 2.3E-15 109.6 13.3 71 140-223 52-124 (165)
85 cd04136 Rap_like Rap-like subf 99.2 6.6E-11 1.4E-15 110.5 11.6 103 140-255 49-154 (163)
86 PRK15467 ethanolamine utilizat 99.2 6.3E-11 1.4E-15 110.6 11.2 102 144-260 41-143 (158)
87 smart00173 RAS Ras subfamily o 99.2 9E-11 2E-15 109.9 12.3 151 40-257 2-155 (164)
88 cd04106 Rab23_lke Rab23-like s 99.2 1E-10 2.3E-15 109.1 12.3 101 140-254 51-153 (162)
89 cd00881 GTP_translation_factor 99.2 1E-10 2.3E-15 111.9 12.3 69 139-222 61-129 (189)
90 cd04127 Rab27A Rab27a subfamil 99.2 2E-10 4.3E-15 109.4 13.5 104 140-257 63-170 (180)
91 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 2.6E-10 5.6E-15 109.2 14.2 115 40-221 5-123 (183)
92 cd04138 H_N_K_Ras_like H-Ras/N 99.2 1.2E-10 2.7E-15 108.3 11.6 103 140-256 49-154 (162)
93 cd04123 Rab21 Rab21 subfamily. 99.2 2E-10 4.4E-15 106.9 13.0 102 140-255 49-153 (162)
94 KOG1954 Endocytosis/signaling 99.2 1.6E-11 3.5E-16 122.9 4.9 169 36-223 56-227 (532)
95 cd04114 Rab30 Rab30 subfamily. 99.2 2.5E-10 5.3E-15 107.5 12.8 121 37-223 6-128 (169)
96 cd04175 Rap1 Rap1 subgroup. T 99.2 2E-10 4.2E-15 107.7 12.1 103 140-255 49-154 (164)
97 PF05049 IIGP: Interferon-indu 99.2 1.1E-10 2.3E-15 121.5 10.8 132 7-219 17-153 (376)
98 TIGR02528 EutP ethanolamine ut 99.2 2.2E-10 4.8E-15 104.6 11.7 24 40-63 2-25 (142)
99 COG0699 Predicted GTPases (dyn 99.2 1.5E-08 3.2E-13 114.0 28.6 475 90-611 3-542 (546)
100 cd01890 LepA LepA subfamily. 99.2 1.3E-10 2.9E-15 110.4 10.3 68 139-221 66-133 (179)
101 cd04109 Rab28 Rab28 subfamily. 99.2 1.4E-10 3E-15 114.2 10.7 155 40-259 2-161 (215)
102 cd04154 Arl2 Arl2 subfamily. 99.2 3.7E-10 8.1E-15 107.0 13.2 147 37-254 13-165 (173)
103 cd04144 Ras2 Ras2 subfamily. 99.2 2.7E-10 5.8E-15 109.8 12.3 108 140-260 47-159 (190)
104 cd04111 Rab39 Rab39 subfamily. 99.2 3.9E-10 8.5E-15 110.5 13.6 157 39-260 3-162 (211)
105 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 4.1E-10 8.8E-15 106.5 13.2 154 40-259 2-160 (170)
106 cd04159 Arl10_like Arl10-like 99.2 4.6E-10 9.9E-15 103.8 13.3 113 40-223 1-117 (159)
107 cd04156 ARLTS1 ARLTS1 subfamil 99.2 5E-10 1.1E-14 104.3 13.5 111 40-221 1-115 (160)
108 cd00876 Ras Ras family. The R 99.2 3.5E-10 7.6E-15 105.0 12.3 147 40-254 1-151 (160)
109 cd04110 Rab35 Rab35 subfamily. 99.2 3.3E-10 7.2E-15 110.0 12.6 156 37-260 5-163 (199)
110 cd04107 Rab32_Rab38 Rab38/Rab3 99.1 3.8E-10 8.2E-15 109.8 12.8 106 140-259 50-163 (201)
111 cd01850 CDC_Septin CDC/Septin. 99.1 3.7E-10 8.1E-15 114.9 13.3 137 40-223 6-159 (276)
112 cd04160 Arfrp1 Arfrp1 subfamil 99.1 4.1E-10 8.8E-15 105.7 12.7 70 139-222 49-122 (167)
113 cd04176 Rap2 Rap2 subgroup. T 99.1 2.6E-10 5.7E-15 106.7 11.0 102 141-255 50-154 (163)
114 cd04151 Arl1 Arl1 subfamily. 99.1 4.4E-10 9.5E-15 104.7 11.9 70 140-222 43-115 (158)
115 cd04115 Rab33B_Rab33A Rab33B/R 99.1 4.2E-10 9E-15 106.3 11.9 96 140-248 51-150 (170)
116 cd01893 Miro1 Miro1 subfamily. 99.1 4.6E-10 1E-14 105.6 12.0 115 40-223 2-119 (166)
117 cd04140 ARHI_like ARHI subfami 99.1 3.4E-10 7.4E-15 106.3 11.0 105 140-257 49-158 (165)
118 cd04125 RabA_like RabA-like su 99.1 8.9E-10 1.9E-14 105.9 14.1 107 140-259 49-157 (188)
119 cd04124 RabL2 RabL2 subfamily. 99.1 4.2E-10 9.1E-15 105.3 11.5 114 40-220 2-117 (161)
120 PLN03118 Rab family protein; P 99.1 6.5E-10 1.4E-14 109.0 13.1 156 38-260 14-173 (211)
121 PLN03110 Rab GTPase; Provision 99.1 6.9E-10 1.5E-14 109.3 13.2 151 38-254 12-164 (216)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.1 6.4E-10 1.4E-14 103.5 12.2 72 139-223 42-116 (158)
123 cd04120 Rab12 Rab12 subfamily. 99.1 7.7E-10 1.7E-14 107.5 13.2 151 40-256 2-155 (202)
124 cd04118 Rab24 Rab24 subfamily. 99.1 5.1E-10 1.1E-14 108.0 11.5 106 140-259 50-161 (193)
125 PLN03108 Rab family protein; P 99.1 1E-09 2.2E-14 107.6 13.6 153 38-256 6-160 (210)
126 cd04177 RSR1 RSR1 subgroup. R 99.1 6.5E-10 1.4E-14 104.7 11.8 102 140-254 49-154 (168)
127 smart00178 SAR Sar1p-like memb 99.1 1.8E-09 3.9E-14 103.5 14.9 114 37-221 16-132 (184)
128 cd01863 Rab18 Rab18 subfamily. 99.1 1.3E-09 2.7E-14 101.7 13.4 147 40-254 2-152 (161)
129 PF10662 PduV-EutP: Ethanolami 99.1 4.4E-10 9.6E-15 101.1 9.7 24 40-63 3-26 (143)
130 PTZ00369 Ras-like protein; Pro 99.1 9.1E-10 2E-14 106.0 12.6 69 140-221 53-124 (189)
131 cd04116 Rab9 Rab9 subfamily. 99.1 1.5E-09 3.2E-14 102.4 13.8 148 37-254 4-161 (170)
132 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 1E-09 2.2E-14 104.0 12.6 151 40-257 4-157 (172)
133 cd04137 RheB Rheb (Ras Homolog 99.1 1E-09 2.3E-14 104.5 12.4 152 40-259 3-158 (180)
134 cd01896 DRG The developmentall 99.1 1.1E-09 2.5E-14 108.8 13.0 24 40-63 2-25 (233)
135 cd00157 Rho Rho (Ras homology) 99.1 3.4E-10 7.3E-15 106.6 8.7 70 140-223 48-120 (171)
136 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 7.3E-10 1.6E-14 105.2 10.9 112 38-221 15-130 (174)
137 cd00879 Sar1 Sar1 subfamily. 99.1 2.7E-09 5.8E-14 102.7 15.0 113 37-221 18-134 (190)
138 TIGR00437 feoB ferrous iron tr 99.1 4.7E-10 1E-14 125.7 11.1 109 140-260 41-151 (591)
139 cd01891 TypA_BipA TypA (tyrosi 99.1 1.9E-09 4.1E-14 104.3 13.9 69 139-222 64-132 (194)
140 PF00009 GTP_EFTU: Elongation 99.1 1.6E-10 3.6E-15 111.1 6.5 70 136-220 66-135 (188)
141 cd04149 Arf6 Arf6 subfamily. 99.1 8.7E-10 1.9E-14 104.0 11.1 114 37-222 8-125 (168)
142 cd04166 CysN_ATPS CysN_ATPS su 99.1 5.3E-10 1.2E-14 109.4 9.9 82 124-222 62-145 (208)
143 TIGR00993 3a0901s04IAP86 chlor 99.1 1.2E-09 2.5E-14 119.2 13.1 125 39-222 119-251 (763)
144 cd04117 Rab15 Rab15 subfamily. 99.1 1.6E-09 3.5E-14 101.4 12.6 150 40-255 2-153 (161)
145 cd04146 RERG_RasL11_like RERG/ 99.1 7.2E-10 1.6E-14 104.0 10.2 71 140-222 47-121 (165)
146 cd04161 Arl2l1_Arl13_like Arl2 99.1 1.8E-09 3.9E-14 101.7 13.0 71 139-223 42-116 (167)
147 cd04158 ARD1 ARD1 subfamily. 99.1 9.8E-10 2.1E-14 103.7 11.1 70 139-222 42-115 (169)
148 cd04165 GTPBP1_like GTPBP1-lik 99.0 7.8E-10 1.7E-14 109.1 10.3 74 135-222 79-153 (224)
149 cd04147 Ras_dva Ras-dva subfam 99.0 1.5E-09 3.2E-14 105.4 11.7 69 140-222 47-119 (198)
150 cd04132 Rho4_like Rho4-like su 99.0 1.9E-09 4.2E-14 103.3 12.3 154 40-260 2-163 (187)
151 cd04148 RGK RGK subfamily. Th 99.0 4E-09 8.6E-14 104.2 14.8 109 139-262 49-161 (221)
152 cd01884 EF_Tu EF-Tu subfamily. 99.0 6.4E-10 1.4E-14 107.4 8.7 70 137-221 62-132 (195)
153 CHL00189 infB translation init 99.0 2.3E-09 5E-14 121.3 13.8 121 36-222 242-362 (742)
154 TIGR00231 small_GTP small GTP- 99.0 2.9E-09 6.2E-14 97.9 12.1 29 39-68 2-30 (161)
155 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 7.5E-10 1.6E-14 102.2 7.9 160 37-262 21-183 (221)
156 cd04155 Arl3 Arl3 subfamily. 99.0 3E-09 6.4E-14 100.5 12.3 115 37-222 13-130 (173)
157 cd01889 SelB_euk SelB subfamil 99.0 2.8E-09 6E-14 102.9 12.0 67 139-222 67-135 (192)
158 KOG1489 Predicted GTP-binding 99.0 6.8E-10 1.5E-14 110.0 7.7 155 37-254 195-357 (366)
159 TIGR00487 IF-2 translation ini 99.0 2.2E-09 4.8E-14 119.7 12.7 117 36-221 85-201 (587)
160 PRK09602 translation-associate 99.0 7.9E-09 1.7E-13 110.1 16.4 112 39-187 2-113 (396)
161 TIGR00491 aIF-2 translation in 99.0 3.1E-09 6.8E-14 118.3 13.8 133 37-221 3-135 (590)
162 TIGR00475 selB selenocysteine- 99.0 2.3E-09 5E-14 120.1 12.8 104 140-260 50-162 (581)
163 cd00882 Ras_like_GTPase Ras-li 99.0 2E-09 4.2E-14 97.9 10.0 100 139-252 44-148 (157)
164 cd04150 Arf1_5_like Arf1-Arf5- 99.0 3.2E-09 6.9E-14 99.2 11.3 70 139-222 43-116 (159)
165 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 5.2E-09 1.1E-13 98.3 12.8 112 40-222 1-114 (164)
166 cd04128 Spg1 Spg1p. Spg1p (se 99.0 4.5E-09 9.7E-14 100.6 12.2 68 140-221 49-118 (182)
167 smart00174 RHO Rho (Ras homolo 99.0 1.8E-09 4E-14 102.1 9.2 69 140-222 46-117 (174)
168 PLN03071 GTP-binding nuclear p 99.0 2.5E-09 5.3E-14 105.5 10.3 104 140-259 62-167 (219)
169 cd01892 Miro2 Miro2 subfamily. 99.0 4.5E-09 9.8E-14 99.2 11.5 120 37-222 3-123 (169)
170 PTZ00133 ADP-ribosylation fact 99.0 1E-08 2.2E-13 98.1 13.8 69 139-221 60-132 (182)
171 smart00177 ARF ARF-like small 99.0 4.4E-09 9.5E-14 99.9 11.2 69 139-221 56-128 (175)
172 cd01886 EF-G Elongation factor 99.0 2.5E-09 5.5E-14 108.5 10.1 69 138-221 62-130 (270)
173 cd04143 Rhes_like Rhes_like su 99.0 8.1E-09 1.8E-13 103.5 13.3 105 140-258 48-165 (247)
174 cd01888 eIF2_gamma eIF2-gamma 99.0 6E-09 1.3E-13 101.5 12.0 103 140-257 83-192 (203)
175 cd04121 Rab40 Rab40 subfamily. 98.9 9.6E-09 2.1E-13 98.8 13.2 107 140-260 55-163 (189)
176 cd01874 Cdc42 Cdc42 subfamily. 98.9 3.5E-09 7.5E-14 100.6 9.7 115 40-222 3-120 (175)
177 PLN00223 ADP-ribosylation fact 98.9 1.3E-08 2.8E-13 97.3 13.4 69 140-222 61-133 (181)
178 cd04126 Rab20 Rab20 subfamily. 98.9 1.1E-08 2.3E-13 100.8 12.8 111 40-221 2-114 (220)
179 COG0536 Obg Predicted GTPase [ 98.9 3E-09 6.5E-14 106.9 8.9 125 40-224 161-292 (369)
180 KOG1490 GTP-binding protein CR 98.9 1.3E-09 2.9E-14 113.6 6.4 135 30-224 160-298 (620)
181 PRK05306 infB translation init 98.9 6.9E-09 1.5E-13 118.6 12.3 116 36-221 288-403 (787)
182 cd00877 Ran Ran (Ras-related n 98.9 8.7E-09 1.9E-13 97.0 11.1 103 140-259 49-154 (166)
183 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 1.5E-08 3.3E-13 100.3 12.9 117 37-221 12-131 (232)
184 cd01870 RhoA_like RhoA-like su 98.9 1.1E-08 2.4E-13 96.8 11.5 116 39-222 2-120 (175)
185 PRK10512 selenocysteinyl-tRNA- 98.9 6.6E-09 1.4E-13 116.8 11.4 108 137-261 48-163 (614)
186 cd01900 YchF YchF subfamily. 98.9 4.6E-09 9.9E-14 106.0 9.1 98 41-185 1-101 (274)
187 cd04130 Wrch_1 Wrch-1 subfamil 98.9 6.9E-09 1.5E-13 98.2 9.8 69 140-222 48-119 (173)
188 cd04105 SR_beta Signal recogni 98.9 2.2E-08 4.7E-13 97.5 13.4 72 139-223 47-125 (203)
189 cd04168 TetM_like Tet(M)-like 98.9 7.2E-09 1.6E-13 103.2 10.2 69 138-221 62-130 (237)
190 cd04134 Rho3 Rho3 subfamily. 98.9 7.5E-09 1.6E-13 99.6 9.7 69 140-222 48-119 (189)
191 PTZ00258 GTP-binding protein; 98.9 8.6E-09 1.9E-13 108.6 10.5 103 37-186 20-125 (390)
192 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 1.5E-08 3.3E-13 96.9 11.1 115 39-221 6-123 (182)
193 cd04169 RF3 RF3 subfamily. Pe 98.9 2.4E-08 5.3E-13 101.2 13.1 71 137-222 68-138 (267)
194 cd01871 Rac1_like Rac1-like su 98.8 3E-08 6.5E-13 94.1 12.3 68 140-221 49-119 (174)
195 cd04135 Tc10 TC10 subfamily. 98.8 2.1E-08 4.5E-13 94.8 11.1 69 140-222 48-119 (174)
196 cd04131 Rnd Rnd subfamily. Th 98.8 1.8E-08 3.8E-13 96.1 10.5 114 40-221 3-119 (178)
197 CHL00071 tufA elongation facto 98.8 9.5E-09 2.1E-13 110.8 9.6 72 137-223 72-144 (409)
198 PRK09601 GTP-binding protein Y 98.8 1.5E-08 3.2E-13 105.6 10.5 101 39-186 3-106 (364)
199 KOG0078 GTP-binding protein SE 98.8 1.9E-08 4.2E-13 94.8 10.0 157 35-257 9-167 (207)
200 PRK04004 translation initiatio 98.8 3.3E-08 7.2E-13 110.6 13.8 66 140-220 71-136 (586)
201 PF00735 Septin: Septin; Inte 98.8 7.5E-09 1.6E-13 105.3 7.9 139 40-223 6-158 (281)
202 PF00071 Ras: Ras family; Int 98.8 2.4E-08 5.2E-13 93.1 10.3 150 40-255 1-152 (162)
203 cd04170 EF-G_bact Elongation f 98.8 2.6E-08 5.5E-13 101.5 11.2 70 138-222 62-131 (268)
204 cd04102 RabL3 RabL3 (Rab-like3 98.8 1E-07 2.2E-12 92.5 14.9 70 140-222 54-144 (202)
205 cd04133 Rop_like Rop subfamily 98.8 2.7E-08 5.9E-13 94.5 10.5 115 40-222 3-120 (176)
206 TIGR01393 lepA GTP-binding pro 98.8 3.4E-08 7.3E-13 110.9 12.8 132 38-221 3-136 (595)
207 cd01885 EF2 EF2 (for archaea a 98.8 2.8E-08 6E-13 97.8 10.7 67 139-220 72-138 (222)
208 cd01875 RhoG RhoG subfamily. 98.8 4.4E-08 9.5E-13 94.5 11.9 116 39-222 4-122 (191)
209 cd04167 Snu114p Snu114p subfam 98.8 3.3E-08 7.2E-13 97.0 11.0 66 140-220 71-136 (213)
210 smart00176 RAN Ran (Ras-relate 98.8 2.9E-08 6.3E-13 96.3 9.6 107 139-261 43-151 (200)
211 PRK12317 elongation factor 1-a 98.8 3.2E-08 6.9E-13 107.6 10.7 81 125-221 70-153 (425)
212 cd01883 EF1_alpha Eukaryotic e 98.7 1.4E-08 3.1E-13 100.1 6.8 82 124-221 62-151 (219)
213 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.7 8.8E-08 1.9E-12 94.3 12.2 115 40-222 3-120 (222)
214 KOG0084 GTPase Rab1/YPT1, smal 98.7 4.8E-08 1E-12 90.8 9.6 153 35-253 6-161 (205)
215 COG1163 DRG Predicted GTPase [ 98.7 2.4E-08 5.2E-13 99.7 7.6 87 39-186 64-150 (365)
216 PRK05433 GTP-binding protein L 98.7 1.1E-07 2.5E-12 106.7 13.8 133 37-221 6-140 (600)
217 COG1100 GTPase SAR1 and relate 98.7 1.3E-07 2.9E-12 92.9 12.7 119 39-225 6-129 (219)
218 PLN03127 Elongation factor Tu; 98.7 4.2E-08 9.1E-13 106.4 9.6 130 39-222 62-192 (447)
219 KOG2486 Predicted GTPase [Gene 98.7 4E-08 8.7E-13 96.0 8.3 128 36-222 134-263 (320)
220 TIGR02836 spore_IV_A stage IV 98.7 1.4E-07 3.1E-12 97.9 12.6 149 40-223 19-196 (492)
221 PRK05124 cysN sulfate adenylyl 98.7 2.2E-07 4.7E-12 101.8 15.0 71 136-222 103-175 (474)
222 TIGR02034 CysN sulfate adenyly 98.7 8.7E-08 1.9E-12 103.2 11.5 82 124-222 65-148 (406)
223 TIGR00484 EF-G translation elo 98.7 1.1E-07 2.4E-12 109.4 12.6 134 37-222 9-142 (689)
224 PRK09435 membrane ATPase/prote 98.7 3.3E-07 7.1E-12 95.1 14.4 25 37-61 55-79 (332)
225 cd01899 Ygr210 Ygr210 subfamil 98.7 7.7E-08 1.7E-12 99.6 9.5 109 41-186 1-109 (318)
226 TIGR00485 EF-Tu translation el 98.7 5.6E-08 1.2E-12 104.5 8.5 130 39-222 13-143 (394)
227 cd01873 RhoBTB RhoBTB subfamil 98.6 1.6E-07 3.5E-12 90.8 10.6 66 140-221 66-134 (195)
228 PRK12736 elongation factor Tu; 98.6 6.8E-08 1.5E-12 103.7 8.8 70 138-222 73-143 (394)
229 PRK00007 elongation factor G; 98.6 2E-07 4.3E-12 107.2 13.1 135 37-223 9-143 (693)
230 TIGR03680 eif2g_arch translati 98.6 1.4E-07 2.9E-12 101.8 11.0 69 139-222 79-149 (406)
231 PRK12739 elongation factor G; 98.6 1.3E-07 2.7E-12 108.8 11.3 134 37-222 7-140 (691)
232 PRK12735 elongation factor Tu; 98.6 1.3E-07 2.9E-12 101.6 10.5 71 137-222 72-143 (396)
233 KOG0410 Predicted GTP binding 98.6 1.2E-07 2.6E-12 94.4 8.8 131 33-222 173-309 (410)
234 cd04129 Rho2 Rho2 subfamily. 98.6 1.9E-07 4.2E-12 89.6 10.2 68 140-221 49-119 (187)
235 PRK05506 bifunctional sulfate 98.6 8.1E-08 1.8E-12 109.4 8.6 70 136-221 100-171 (632)
236 PRK00049 elongation factor Tu; 98.6 1.1E-07 2.5E-12 102.0 9.1 70 137-221 72-142 (396)
237 PF09439 SRPRB: Signal recogni 98.6 1.4E-07 3.1E-12 88.8 8.5 119 37-223 2-128 (181)
238 cd01882 BMS1 Bms1. Bms1 is an 98.6 1.7E-07 3.8E-12 92.7 9.4 70 136-223 79-149 (225)
239 KOG0093 GTPase Rab3, small G p 98.6 2.3E-07 5.1E-12 81.7 8.8 120 38-223 21-142 (193)
240 KOG0092 GTPase Rab5/YPT51 and 98.6 8.8E-08 1.9E-12 88.7 6.4 154 39-260 6-163 (200)
241 PLN03126 Elongation factor Tu; 98.6 2.2E-07 4.7E-12 101.5 10.7 130 39-222 82-212 (478)
242 COG4917 EutP Ethanolamine util 98.6 7.2E-08 1.6E-12 82.8 5.3 30 39-68 2-31 (148)
243 PF08477 Miro: Miro-like prote 98.6 1.3E-07 2.8E-12 83.4 7.2 24 40-63 1-24 (119)
244 PF00025 Arf: ADP-ribosylation 98.6 1.8E-07 4E-12 88.8 8.6 114 38-223 14-131 (175)
245 TIGR00483 EF-1_alpha translati 98.6 1.9E-07 4E-12 101.6 9.5 69 138-221 83-155 (426)
246 TIGR01394 TypA_BipA GTP-bindin 98.6 4E-07 8.7E-12 102.0 12.4 70 138-222 62-131 (594)
247 KOG0095 GTPase Rab30, small G 98.6 4.2E-07 9.1E-12 80.1 9.5 122 36-224 5-129 (213)
248 PRK10218 GTP-binding protein; 98.5 4.3E-07 9.3E-12 101.7 11.7 69 138-221 66-134 (607)
249 COG2229 Predicted GTPase [Gene 98.5 1.6E-06 3.5E-11 80.0 13.0 153 37-250 9-164 (187)
250 cd01858 NGP_1 NGP-1. Autoanti 98.5 2.1E-07 4.5E-12 86.7 7.4 27 39-65 103-129 (157)
251 cd04103 Centaurin_gamma Centau 98.5 6.2E-07 1.3E-11 83.7 10.5 99 140-256 47-151 (158)
252 PRK00741 prfC peptide chain re 98.5 6.5E-07 1.4E-11 99.0 12.4 70 138-222 77-146 (526)
253 PTZ00327 eukaryotic translatio 98.5 6.7E-07 1.5E-11 97.0 12.0 68 140-222 117-186 (460)
254 TIGR00503 prfC peptide chain r 98.5 6.2E-07 1.3E-11 99.2 11.6 70 137-221 77-146 (527)
255 TIGR00490 aEF-2 translation el 98.5 5.3E-07 1.1E-11 104.0 11.5 70 137-221 83-152 (720)
256 PLN00023 GTP-binding protein; 98.5 5.9E-07 1.3E-11 91.9 10.1 70 140-222 83-166 (334)
257 COG5019 CDC3 Septin family pro 98.5 8.4E-07 1.8E-11 90.6 10.9 82 140-223 82-178 (373)
258 KOG2655 Septin family protein 98.5 7.7E-07 1.7E-11 91.6 10.4 83 140-224 79-175 (366)
259 PRK04000 translation initiatio 98.5 1.2E-06 2.6E-11 94.5 12.4 23 39-61 10-32 (411)
260 cd01849 YlqF_related_GTPase Yl 98.5 2.3E-07 4.9E-12 86.3 5.6 32 37-68 99-130 (155)
261 cd04178 Nucleostemin_like Nucl 98.4 2.4E-07 5.2E-12 87.5 5.3 29 38-66 117-145 (172)
262 cd01855 YqeH YqeH. YqeH is an 98.4 3.7E-07 8E-12 87.9 6.5 25 39-63 128-152 (190)
263 KOG0098 GTPase Rab2, small G p 98.4 1.4E-06 3E-11 80.2 9.6 122 36-223 4-127 (216)
264 PTZ00132 GTP-binding nuclear p 98.4 3.1E-06 6.7E-11 83.2 12.7 98 140-254 58-158 (215)
265 COG0012 Predicted GTPase, prob 98.4 6.4E-07 1.4E-11 92.1 7.6 105 39-186 3-107 (372)
266 PRK13351 elongation factor G; 98.4 1.7E-06 3.7E-11 99.7 12.1 70 138-222 71-140 (687)
267 TIGR00750 lao LAO/AO transport 98.4 7.2E-06 1.6E-10 84.8 15.6 25 37-61 33-57 (300)
268 PLN00116 translation elongatio 98.4 2.1E-06 4.6E-11 100.6 12.8 66 140-220 98-163 (843)
269 PRK07560 elongation factor EF- 98.4 1.7E-06 3.7E-11 100.1 11.4 133 37-220 19-152 (731)
270 PTZ00416 elongation factor 2; 98.4 2E-06 4.4E-11 100.5 12.0 66 140-220 92-157 (836)
271 KOG1491 Predicted GTP-binding 98.3 4.8E-07 1E-11 90.9 5.4 102 37-185 19-123 (391)
272 PTZ00141 elongation factor 1- 98.3 1.5E-06 3.2E-11 94.6 9.1 67 136-219 81-157 (446)
273 KOG1547 Septin CDC10 and relat 98.3 8.9E-07 1.9E-11 84.6 6.1 80 140-221 104-198 (336)
274 KOG0073 GTP-binding ADP-ribosy 98.3 6.1E-06 1.3E-10 74.5 10.9 155 39-265 17-179 (185)
275 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.1E-06 2.4E-11 80.3 6.5 24 40-63 85-108 (141)
276 KOG0075 GTP-binding ADP-ribosy 98.3 2.9E-06 6.2E-11 75.0 7.8 72 138-222 63-137 (186)
277 KOG1145 Mitochondrial translat 98.3 1E-05 2.2E-10 86.0 13.1 144 36-250 151-299 (683)
278 COG0532 InfB Translation initi 98.3 7.7E-06 1.7E-10 87.6 12.3 155 37-260 4-166 (509)
279 PLN00043 elongation factor 1-a 98.3 4E-06 8.7E-11 91.2 10.2 70 136-221 81-159 (447)
280 TIGR00092 GTP-binding protein 98.2 2.8E-06 6E-11 88.8 8.0 104 39-186 3-107 (368)
281 cd01851 GBP Guanylate-binding 98.2 5E-06 1.1E-10 82.1 9.4 38 37-74 6-46 (224)
282 TIGR01425 SRP54_euk signal rec 98.2 5.1E-06 1.1E-10 88.7 10.0 80 139-229 182-261 (429)
283 PRK13768 GTPase; Provisional 98.2 9.8E-06 2.1E-10 81.6 11.3 76 140-224 97-179 (253)
284 COG1161 Predicted GTPases [Gen 98.2 1.1E-06 2.4E-11 91.5 4.3 31 40-75 134-164 (322)
285 KOG0091 GTPase Rab39, small G 98.2 6E-06 1.3E-10 74.2 7.6 157 38-259 8-168 (213)
286 PRK12740 elongation factor G; 98.2 5.9E-06 1.3E-10 95.1 9.5 70 138-222 58-127 (668)
287 PRK11889 flhF flagellar biosyn 98.2 9.7E-06 2.1E-10 84.8 10.0 90 140-244 321-412 (436)
288 KOG0079 GTP-binding protein H- 98.1 8E-06 1.7E-10 72.2 7.8 122 35-223 5-128 (198)
289 KOG0080 GTPase Rab18, small G 98.1 4.9E-06 1.1E-10 74.6 6.2 119 36-221 9-131 (209)
290 KOG0394 Ras-related GTPase [Ge 98.1 5.1E-06 1.1E-10 76.4 6.3 150 37-254 8-168 (210)
291 TIGR03596 GTPase_YlqF ribosome 98.1 3.5E-06 7.6E-11 86.1 5.5 29 38-66 118-146 (276)
292 KOG1707 Predicted Ras related/ 98.1 1.3E-05 2.8E-10 86.1 9.6 119 39-225 10-133 (625)
293 PRK09563 rbgA GTPase YlqF; Rev 98.1 3.9E-06 8.5E-11 86.2 5.4 28 38-65 121-148 (287)
294 cd01856 YlqF YlqF. Proteins o 98.1 6.1E-06 1.3E-10 78.0 6.3 27 37-63 114-140 (171)
295 COG1703 ArgK Putative periplas 98.0 0.00031 6.7E-09 70.3 17.7 25 37-61 50-74 (323)
296 KOG1486 GTP-binding protein DR 98.0 3.8E-06 8.3E-11 80.8 3.9 24 39-62 63-86 (364)
297 KOG0090 Signal recognition par 98.0 2E-05 4.4E-10 74.4 8.6 71 141-224 83-162 (238)
298 COG5256 TEF1 Translation elong 98.0 3.4E-05 7.3E-10 80.2 10.9 68 139-221 84-159 (428)
299 TIGR00157 ribosome small subun 98.0 1.7E-05 3.7E-10 79.4 8.4 25 39-63 121-145 (245)
300 PRK13796 GTPase YqeH; Provisio 98.0 6.6E-06 1.4E-10 87.3 5.7 24 39-62 161-184 (365)
301 PRK12289 GTPase RsgA; Reviewed 98.0 9.5E-06 2E-10 85.2 6.7 24 40-63 174-197 (352)
302 KOG0087 GTPase Rab11/YPT3, sma 98.0 3.1E-05 6.6E-10 73.1 9.2 122 34-221 10-133 (222)
303 TIGR03597 GTPase_YqeH ribosome 98.0 5.4E-06 1.2E-10 87.9 4.7 24 39-62 155-178 (360)
304 PRK14723 flhF flagellar biosyn 98.0 2E-05 4.3E-10 89.4 9.3 170 40-251 187-365 (767)
305 PRK12288 GTPase RsgA; Reviewed 98.0 2.1E-05 4.6E-10 82.5 8.8 24 40-63 207-230 (347)
306 PRK06731 flhF flagellar biosyn 97.9 0.0001 2.2E-09 74.4 12.8 81 139-231 154-235 (270)
307 KOG1424 Predicted GTP-binding 97.9 6.1E-06 1.3E-10 87.3 3.9 34 37-75 313-346 (562)
308 PF03029 ATP_bind_1: Conserved 97.9 1.8E-05 3.9E-10 78.7 7.1 19 43-61 1-19 (238)
309 PRK14722 flhF flagellar biosyn 97.9 1.5E-05 3.3E-10 83.8 6.8 23 39-61 138-160 (374)
310 KOG0097 GTPase Rab14, small G 97.9 6E-05 1.3E-09 65.9 9.0 124 35-224 8-133 (215)
311 KOG0086 GTPase Rab4, small G p 97.9 8.2E-05 1.8E-09 66.2 9.9 123 34-222 5-129 (214)
312 PRK12726 flagellar biosynthesi 97.9 6.8E-05 1.5E-09 78.3 11.0 152 38-231 206-366 (407)
313 PF03193 DUF258: Protein of un 97.9 1.1E-05 2.4E-10 74.6 4.3 25 39-63 36-60 (161)
314 PF03308 ArgK: ArgK protein; 97.9 2.2E-05 4.8E-10 77.3 6.6 25 37-61 28-52 (266)
315 cd03112 CobW_like The function 97.9 5.6E-05 1.2E-09 70.5 9.1 23 39-61 1-23 (158)
316 PRK14974 cell division protein 97.9 2.6E-05 5.6E-10 81.3 7.2 81 140-231 223-303 (336)
317 PF00448 SRP54: SRP54-type pro 97.9 1.1E-05 2.4E-10 77.9 4.0 82 139-231 83-164 (196)
318 KOG3883 Ras family small GTPas 97.9 0.00023 5E-09 63.5 11.8 71 140-224 60-135 (198)
319 cd03114 ArgK-like The function 97.9 0.00016 3.4E-09 66.6 11.3 58 139-218 91-148 (148)
320 KOG0395 Ras-related GTPase [Ge 97.9 5.2E-05 1.1E-09 73.1 8.3 148 38-253 3-154 (196)
321 KOG1532 GTPase XAB1, interacts 97.9 9.9E-05 2.1E-09 72.3 10.1 78 140-223 116-197 (366)
322 PRK10416 signal recognition pa 97.8 4.3E-05 9.2E-10 79.3 8.2 83 139-230 196-282 (318)
323 PRK14721 flhF flagellar biosyn 97.8 0.0002 4.2E-09 76.7 12.4 93 139-244 269-361 (420)
324 PRK00098 GTPase RsgA; Reviewed 97.8 6E-05 1.3E-09 77.9 8.3 24 40-63 166-189 (298)
325 PRK12727 flagellar biosynthesi 97.8 5.7E-05 1.2E-09 82.1 8.1 94 139-246 428-521 (559)
326 cd01859 MJ1464 MJ1464. This f 97.8 8.3E-05 1.8E-09 69.0 8.2 26 38-63 101-126 (156)
327 PRK12724 flagellar biosynthesi 97.8 0.00014 3E-09 77.2 10.4 83 139-231 299-383 (432)
328 PRK05703 flhF flagellar biosyn 97.8 0.00026 5.7E-09 76.5 12.8 82 140-231 300-381 (424)
329 COG0480 FusA Translation elong 97.8 0.00014 3.1E-09 82.4 11.0 136 37-223 9-144 (697)
330 PF04670 Gtr1_RagA: Gtr1/RagA 97.7 0.00011 2.4E-09 72.4 8.5 120 40-223 1-127 (232)
331 cd01854 YjeQ_engC YjeQ/EngC. 97.7 0.00013 2.8E-09 75.0 9.3 25 39-63 162-186 (287)
332 PRK00771 signal recognition pa 97.7 0.00018 3.8E-09 77.7 10.2 79 141-230 177-255 (437)
333 PTZ00099 rab6; Provisional 97.7 0.00013 2.8E-09 69.3 8.1 114 139-265 28-143 (176)
334 TIGR00064 ftsY signal recognit 97.6 0.00095 2.1E-08 67.9 14.2 84 139-231 154-241 (272)
335 COG0050 TufB GTPases - transla 97.6 0.00021 4.6E-09 70.7 8.9 130 40-223 14-144 (394)
336 PRK10867 signal recognition pa 97.6 0.00032 6.9E-09 75.6 10.9 81 139-230 183-263 (433)
337 KOG0070 GTP-binding ADP-ribosy 97.6 0.00018 4E-09 66.7 7.7 146 39-257 18-171 (181)
338 KOG0081 GTPase Rab27, small G 97.6 2.5E-05 5.3E-10 69.9 1.8 101 140-253 67-170 (219)
339 cd03115 SRP The signal recogni 97.6 0.00021 4.5E-09 67.6 8.1 80 139-229 82-161 (173)
340 KOG0462 Elongation factor-type 97.6 0.00022 4.8E-09 76.2 8.9 134 37-222 59-192 (650)
341 PRK12723 flagellar biosynthesi 97.6 0.00069 1.5E-08 72.0 12.6 96 139-246 254-349 (388)
342 PRK14845 translation initiatio 97.5 0.00066 1.4E-08 80.2 12.5 68 139-221 525-592 (1049)
343 TIGR00959 ffh signal recogniti 97.5 0.00033 7.3E-09 75.4 9.1 81 139-230 182-262 (428)
344 KOG4252 GTP-binding protein [S 97.5 3.1E-05 6.8E-10 70.7 1.0 68 141-223 70-140 (246)
345 COG1217 TypA Predicted membran 97.5 0.00024 5.3E-09 74.5 7.4 134 37-224 4-137 (603)
346 COG1162 Predicted GTPases [Gen 97.5 0.00026 5.6E-09 71.6 7.3 22 40-61 166-187 (301)
347 TIGR00073 hypB hydrogenase acc 97.5 9.3E-05 2E-09 72.3 3.9 25 37-61 21-45 (207)
348 TIGR00101 ureG urease accessor 97.5 0.00068 1.5E-08 65.7 9.8 23 39-61 2-24 (199)
349 KOG3859 Septins (P-loop GTPase 97.5 0.00025 5.4E-09 69.5 6.4 134 39-223 43-192 (406)
350 KOG0076 GTP-binding ADP-ribosy 97.4 0.00035 7.6E-09 64.0 6.4 109 139-260 68-183 (197)
351 KOG1144 Translation initiation 97.3 0.00097 2.1E-08 73.5 9.9 132 37-220 474-605 (1064)
352 KOG0458 Elongation factor 1 al 97.3 0.00035 7.5E-09 75.4 6.4 113 124-252 240-370 (603)
353 KOG2485 Conserved ATP/GTP bind 97.3 0.00023 4.9E-09 71.4 4.6 26 37-62 142-167 (335)
354 TIGR03348 VI_IcmF type VI secr 97.3 0.0014 3.1E-08 79.9 12.3 56 7-67 83-138 (1169)
355 COG5192 BMS1 GTP-binding prote 97.3 0.00066 1.4E-08 72.4 7.8 72 135-224 108-180 (1077)
356 KOG2203 GTP-binding protein [G 97.3 0.24 5.3E-06 53.5 26.6 27 37-63 36-62 (772)
357 KOG0468 U5 snRNP-specific prot 97.3 0.0013 2.8E-08 71.7 9.8 134 37-220 127-262 (971)
358 PRK06995 flhF flagellar biosyn 97.2 0.0043 9.4E-08 67.6 13.8 99 140-251 335-433 (484)
359 KOG1143 Predicted translation 97.2 0.0009 2E-08 68.2 7.4 146 40-224 169-320 (591)
360 COG3276 SelB Selenocysteine-sp 97.2 0.002 4.4E-08 67.7 9.8 68 140-223 50-119 (447)
361 KOG1487 GTP-binding protein DR 97.1 0.00057 1.2E-08 66.5 4.7 30 39-69 60-89 (358)
362 COG1419 FlhF Flagellar GTP-bin 97.1 0.0018 3.9E-08 68.0 8.6 171 38-252 203-381 (407)
363 COG0481 LepA Membrane GTPase L 97.0 0.002 4.2E-08 68.1 8.3 135 37-223 8-144 (603)
364 COG3640 CooC CO dehydrogenase 97.0 0.013 2.9E-07 56.8 13.2 76 167-250 146-222 (255)
365 KOG2484 GTPase [General functi 97.0 0.00063 1.4E-08 70.3 4.2 29 39-67 253-281 (435)
366 KOG1534 Putative transcription 97.0 0.0017 3.7E-08 61.5 6.7 21 40-60 5-25 (273)
367 PF05879 RHD3: Root hair defec 96.9 1.2 2.7E-05 51.8 32.5 22 44-66 1-22 (742)
368 COG4108 PrfC Peptide chain rel 96.9 0.0037 8E-08 65.5 8.9 70 138-222 79-148 (528)
369 KOG0393 Ras-related small GTPa 96.9 0.00077 1.7E-08 64.2 3.3 116 40-222 6-124 (198)
370 KOG0074 GTP-binding ADP-ribosy 96.8 0.0064 1.4E-07 53.8 8.3 115 38-222 17-134 (185)
371 COG5257 GCD11 Translation init 96.7 0.0076 1.7E-07 60.8 9.2 42 40-83 12-53 (415)
372 COG2895 CysN GTPases - Sulfate 96.7 0.0098 2.1E-07 60.8 10.1 148 37-224 5-156 (431)
373 KOG0088 GTPase Rab21, small G 96.7 0.0049 1.1E-07 55.5 6.8 70 139-222 61-133 (218)
374 KOG0077 Vesicle coat complex C 96.6 0.011 2.4E-07 54.0 8.5 115 37-223 19-137 (193)
375 KOG0071 GTP-binding ADP-ribosy 96.5 0.031 6.7E-07 49.6 10.4 121 39-231 18-144 (180)
376 PRK01889 GTPase RsgA; Reviewed 96.5 0.0041 9E-08 65.8 6.2 24 40-63 197-220 (356)
377 KOG4181 Uncharacterized conser 96.5 0.22 4.8E-06 50.9 17.5 78 140-221 264-356 (491)
378 COG0541 Ffh Signal recognition 96.5 0.035 7.5E-07 58.7 12.4 78 139-228 182-260 (451)
379 KOG0461 Selenocysteine-specifi 96.4 0.013 2.8E-07 59.5 8.5 65 140-224 70-139 (522)
380 COG4988 CydD ABC-type transpor 96.3 0.013 2.7E-07 64.2 8.1 28 40-69 349-376 (559)
381 KOG0780 Signal recognition par 96.2 0.0044 9.5E-08 63.9 4.2 79 139-228 183-261 (483)
382 KOG0467 Translation elongation 96.2 0.0082 1.8E-07 66.8 6.5 129 37-219 8-136 (887)
383 KOG0083 GTPase Rab26/Rab37, sm 96.2 0.0017 3.8E-08 56.5 1.0 100 140-252 47-148 (192)
384 TIGR02868 CydC thiol reductant 96.2 0.017 3.6E-07 64.9 8.9 52 163-216 475-527 (529)
385 KOG2749 mRNA cleavage and poly 96.1 0.069 1.5E-06 54.8 12.0 58 13-82 84-141 (415)
386 KOG2423 Nucleolar GTPase [Gene 96.1 0.0059 1.3E-07 63.0 4.3 24 40-63 309-332 (572)
387 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.064 1.4E-06 53.4 11.2 31 40-72 32-62 (254)
388 KOG0460 Mitochondrial translat 96.0 0.022 4.9E-07 57.9 7.6 134 36-223 50-186 (449)
389 KOG0463 GTP-binding protein GP 96.0 0.0083 1.8E-07 61.4 4.5 77 131-223 210-289 (641)
390 COG1136 SalX ABC-type antimicr 95.9 0.006 1.3E-07 59.6 3.4 55 163-218 147-203 (226)
391 COG3840 ThiQ ABC-type thiamine 95.9 0.0062 1.3E-07 56.8 3.2 27 40-67 27-53 (231)
392 KOG1533 Predicted GTPase [Gene 95.8 0.014 3.1E-07 56.4 5.4 20 41-60 5-24 (290)
393 PF13555 AAA_29: P-loop contai 95.8 0.0085 1.8E-07 45.9 3.1 22 39-60 24-45 (62)
394 PRK11537 putative GTP-binding 95.6 0.039 8.5E-07 57.4 8.0 25 37-61 3-27 (318)
395 PRK13695 putative NTPase; Prov 95.6 0.23 5.1E-06 46.7 12.7 22 40-61 2-23 (174)
396 KOG0072 GTP-binding ADP-ribosy 95.5 0.093 2E-06 46.9 8.7 72 138-222 60-134 (182)
397 COG5258 GTPBP1 GTPase [General 95.5 0.018 3.8E-07 59.5 4.8 67 141-223 202-271 (527)
398 COG1116 TauB ABC-type nitrate/ 95.4 0.01 2.3E-07 58.3 2.9 24 40-63 31-54 (248)
399 PF00005 ABC_tran: ABC transpo 95.4 0.012 2.7E-07 52.9 3.1 23 40-62 13-35 (137)
400 cd00071 GMPK Guanosine monopho 95.4 0.014 3E-07 52.9 3.4 21 41-61 2-22 (137)
401 KOG0464 Elongation factor G [T 95.4 0.0081 1.8E-07 62.1 2.1 134 37-222 36-169 (753)
402 COG1101 PhnK ABC-type uncharac 95.4 0.012 2.6E-07 56.4 3.1 22 40-61 34-55 (263)
403 TIGR03796 NHPM_micro_ABC1 NHPM 95.3 0.081 1.7E-06 61.7 10.2 52 163-217 620-671 (710)
404 PRK11174 cysteine/glutathione 95.3 0.12 2.5E-06 58.9 11.2 25 40-66 378-402 (588)
405 COG4107 PhnK ABC-type phosphon 95.2 0.015 3.3E-07 53.6 3.1 31 40-72 34-64 (258)
406 cd01130 VirB11-like_ATPase Typ 95.2 0.028 6.2E-07 53.7 5.1 30 40-71 27-56 (186)
407 PRK13657 cyclic beta-1,2-gluca 95.2 0.067 1.4E-06 60.9 9.0 23 40-62 363-385 (588)
408 TIGR03797 NHPM_micro_ABC2 NHPM 95.2 0.073 1.6E-06 61.8 9.3 22 40-61 481-502 (686)
409 cd01855 YqeH YqeH. YqeH is an 95.2 0.1 2.2E-06 50.0 8.8 119 164-293 22-149 (190)
410 TIGR00958 3a01208 Conjugate Tr 95.1 0.085 1.8E-06 61.5 9.7 22 40-61 509-530 (711)
411 COG1132 MdlB ABC-type multidru 95.1 0.15 3.2E-06 57.9 11.4 22 40-61 357-378 (567)
412 TIGR02857 CydD thiol reductant 95.1 0.08 1.7E-06 59.4 9.2 22 40-61 350-371 (529)
413 PF03205 MobB: Molybdopterin g 95.1 0.016 3.5E-07 52.7 2.9 23 39-61 1-23 (140)
414 PF13521 AAA_28: AAA domain; P 95.1 0.012 2.6E-07 55.0 2.0 22 40-61 1-22 (163)
415 COG0552 FtsY Signal recognitio 95.1 0.18 3.9E-06 51.8 10.5 82 139-229 221-306 (340)
416 TIGR01360 aden_kin_iso1 adenyl 94.9 0.02 4.2E-07 54.6 3.1 26 37-62 2-30 (188)
417 PRK11160 cysteine/glutathione 94.9 0.11 2.3E-06 59.1 9.5 22 40-61 368-389 (574)
418 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.024 5.2E-07 51.8 3.5 23 40-62 28-50 (144)
419 TIGR03263 guanyl_kin guanylate 94.9 0.025 5.5E-07 53.5 3.7 22 40-61 3-24 (180)
420 cd03225 ABC_cobalt_CbiO_domain 94.8 0.025 5.5E-07 55.1 3.7 29 40-70 29-57 (211)
421 cd03261 ABC_Org_Solvent_Resist 94.8 0.024 5.3E-07 56.3 3.6 22 40-61 28-49 (235)
422 PRK13851 type IV secretion sys 94.8 0.037 8.1E-07 58.1 5.0 32 39-72 163-194 (344)
423 cd01983 Fer4_NifH The Fer4_Nif 94.8 0.22 4.8E-06 41.1 8.9 21 41-61 2-22 (99)
424 TIGR03499 FlhF flagellar biosy 94.8 0.033 7.1E-07 57.1 4.5 22 40-61 196-217 (282)
425 cd01859 MJ1464 MJ1464. This f 94.8 0.046 9.9E-07 50.5 5.0 88 166-257 2-89 (156)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.026 5.7E-07 55.3 3.6 29 40-70 32-60 (218)
427 COG0488 Uup ATPase components 94.7 0.2 4.2E-06 55.8 10.7 35 39-75 30-64 (530)
428 KOG0066 eIF2-interacting prote 94.7 0.11 2.5E-06 54.6 8.1 28 40-68 615-642 (807)
429 TIGR01166 cbiO cobalt transpor 94.7 0.028 6.1E-07 53.9 3.6 23 40-62 20-42 (190)
430 cd03264 ABC_drug_resistance_li 94.7 0.026 5.7E-07 55.0 3.4 28 40-69 27-54 (211)
431 cd03222 ABC_RNaseL_inhibitor T 94.7 0.028 6.1E-07 53.3 3.4 24 39-62 26-49 (177)
432 PF02263 GBP: Guanylate-bindin 94.7 0.057 1.2E-06 54.6 5.8 24 38-61 21-44 (260)
433 COG0410 LivF ABC-type branched 94.6 0.029 6.2E-07 54.5 3.4 22 40-61 31-52 (237)
434 COG4559 ABC-type hemin transpo 94.6 0.029 6.2E-07 53.8 3.3 31 40-72 29-59 (259)
435 PRK13541 cytochrome c biogenes 94.6 0.03 6.5E-07 54.0 3.6 23 40-62 28-50 (195)
436 cd03265 ABC_DrrA DrrA is the A 94.6 0.03 6.4E-07 55.1 3.6 22 40-61 28-49 (220)
437 PRK00300 gmk guanylate kinase; 94.6 0.028 6E-07 54.5 3.3 36 40-75 7-43 (205)
438 TIGR02673 FtsE cell division A 94.6 0.031 6.7E-07 54.6 3.7 23 40-62 30-52 (214)
439 cd03224 ABC_TM1139_LivF_branch 94.6 0.031 6.6E-07 55.0 3.7 23 40-62 28-50 (222)
440 cd03218 ABC_YhbG The ABC trans 94.6 0.031 6.7E-07 55.4 3.7 22 40-61 28-49 (232)
441 cd03215 ABC_Carb_Monos_II This 94.6 0.033 7.1E-07 53.0 3.7 23 40-62 28-50 (182)
442 cd03226 ABC_cobalt_CbiO_domain 94.6 0.031 6.8E-07 54.2 3.6 29 40-70 28-56 (205)
443 cd03280 ABC_MutS2 MutS2 homolo 94.6 0.32 6.9E-06 47.0 10.6 20 40-59 30-49 (200)
444 TIGR02475 CobW cobalamin biosy 94.5 0.28 6.1E-06 51.6 10.9 25 37-61 3-27 (341)
445 TIGR00960 3a0501s02 Type II (G 94.5 0.032 6.9E-07 54.6 3.6 22 40-61 31-52 (216)
446 cd03263 ABC_subfamily_A The AB 94.5 0.031 6.7E-07 54.9 3.5 23 40-62 30-52 (220)
447 cd03258 ABC_MetN_methionine_tr 94.5 0.033 7.2E-07 55.2 3.7 29 40-70 33-61 (233)
448 cd03259 ABC_Carb_Solutes_like 94.5 0.032 7E-07 54.5 3.6 22 40-61 28-49 (213)
449 cd03269 ABC_putative_ATPase Th 94.5 0.033 7.1E-07 54.3 3.6 22 40-61 28-49 (210)
450 cd03229 ABC_Class3 This class 94.5 0.035 7.6E-07 52.6 3.6 22 40-61 28-49 (178)
451 PF13207 AAA_17: AAA domain; P 94.5 0.03 6.4E-07 49.2 2.9 22 40-61 1-22 (121)
452 TIGR03375 type_I_sec_LssB type 94.5 0.097 2.1E-06 60.8 8.0 22 40-61 493-514 (694)
453 COG1120 FepC ABC-type cobalami 94.5 0.033 7.2E-07 55.6 3.5 22 40-61 30-51 (258)
454 PRK11629 lolD lipoprotein tran 94.4 0.031 6.8E-07 55.5 3.3 22 40-61 37-58 (233)
455 PLN03232 ABC transporter C fam 94.4 0.2 4.4E-06 63.1 11.1 22 40-61 645-666 (1495)
456 cd03292 ABC_FtsE_transporter F 94.4 0.035 7.5E-07 54.3 3.5 22 40-61 29-50 (214)
457 cd03254 ABCC_Glucan_exporter_l 94.4 0.036 7.8E-07 54.8 3.7 29 40-70 31-59 (229)
458 PRK13543 cytochrome c biogenes 94.4 0.035 7.7E-07 54.3 3.6 29 40-70 39-67 (214)
459 cd03262 ABC_HisP_GlnQ_permease 94.4 0.037 8E-07 54.0 3.7 22 40-61 28-49 (213)
460 PRK13540 cytochrome c biogenes 94.4 0.037 8E-07 53.6 3.6 24 39-62 28-51 (200)
461 cd03231 ABC_CcmA_heme_exporter 94.4 0.038 8.3E-07 53.5 3.7 28 40-69 28-55 (201)
462 TIGR03608 L_ocin_972_ABC putat 94.4 0.037 8E-07 53.7 3.6 22 40-61 26-47 (206)
463 cd02019 NK Nucleoside/nucleoti 94.4 0.036 7.8E-07 43.7 2.9 21 41-61 2-22 (69)
464 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.037 7.9E-07 54.4 3.6 23 40-62 32-54 (220)
465 cd03266 ABC_NatA_sodium_export 94.4 0.037 8.1E-07 54.2 3.6 22 40-61 33-54 (218)
466 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.04 8.6E-07 51.0 3.6 32 39-72 26-57 (157)
467 TIGR02315 ABC_phnC phosphonate 94.4 0.036 7.8E-07 55.3 3.6 23 40-62 30-52 (243)
468 TIGR01193 bacteriocin_ABC ABC- 94.3 0.11 2.3E-06 60.7 7.9 22 40-61 502-523 (708)
469 cd03216 ABC_Carb_Monos_I This 94.3 0.041 8.8E-07 51.4 3.6 24 39-62 27-50 (163)
470 cd03369 ABCC_NFT1 Domain 2 of 94.3 0.038 8.3E-07 53.7 3.6 30 40-71 36-65 (207)
471 cd03219 ABC_Mj1267_LivG_branch 94.3 0.038 8.2E-07 54.9 3.6 22 40-61 28-49 (236)
472 PRK15177 Vi polysaccharide exp 94.3 0.039 8.4E-07 54.0 3.5 30 40-71 15-44 (213)
473 COG0411 LivG ABC-type branched 94.3 0.013 2.7E-07 57.4 0.0 22 40-61 32-53 (250)
474 PRK13651 cobalt transporter AT 94.2 0.04 8.6E-07 57.2 3.6 30 40-71 35-64 (305)
475 PRK14250 phosphate ABC transpo 94.2 0.042 9.1E-07 54.9 3.7 31 40-72 31-61 (241)
476 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.2 0.04 8.7E-07 54.8 3.6 30 40-71 31-60 (238)
477 TIGR00157 ribosome small subun 94.2 0.033 7.2E-07 55.8 2.9 92 163-255 23-114 (245)
478 cd03268 ABC_BcrA_bacitracin_re 94.2 0.039 8.4E-07 53.7 3.4 22 40-61 28-49 (208)
479 cd03236 ABC_RNaseL_inhibitor_d 94.2 0.042 9.2E-07 55.4 3.7 30 40-71 28-57 (255)
480 cd03217 ABC_FeS_Assembly ABC-t 94.2 0.045 9.8E-07 53.0 3.8 23 40-62 28-50 (200)
481 cd03256 ABC_PhnC_transporter A 94.2 0.042 9E-07 54.8 3.6 23 40-62 29-51 (241)
482 cd03230 ABC_DR_subfamily_A Thi 94.2 0.045 9.7E-07 51.6 3.7 23 40-62 28-50 (173)
483 cd03257 ABC_NikE_OppD_transpor 94.2 0.043 9.4E-07 54.1 3.7 22 40-61 33-54 (228)
484 TIGR02211 LolD_lipo_ex lipopro 94.2 0.044 9.5E-07 53.9 3.7 23 40-62 33-55 (221)
485 cd03235 ABC_Metallic_Cations A 94.2 0.043 9.4E-07 53.6 3.6 23 40-62 27-49 (213)
486 TIGR01192 chvA glucan exporter 94.2 0.17 3.6E-06 57.6 8.9 28 40-69 363-390 (585)
487 PRK13539 cytochrome c biogenes 94.2 0.045 9.8E-07 53.3 3.7 23 40-62 30-52 (207)
488 PRK10895 lipopolysaccharide AB 94.2 0.044 9.5E-07 54.7 3.7 22 40-61 31-52 (241)
489 TIGR01978 sufC FeS assembly AT 94.1 0.046 9.9E-07 54.6 3.8 22 40-61 28-49 (243)
490 PRK11124 artP arginine transpo 94.1 0.043 9.2E-07 54.8 3.6 23 40-62 30-52 (242)
491 cd03301 ABC_MalK_N The N-termi 94.1 0.044 9.5E-07 53.5 3.6 22 40-61 28-49 (213)
492 cd03223 ABCD_peroxisomal_ALDP 94.1 0.048 1E-06 51.1 3.7 22 40-61 29-50 (166)
493 TIGR03410 urea_trans_UrtE urea 94.1 0.045 9.8E-07 54.1 3.7 23 40-62 28-50 (230)
494 COG1618 Predicted nucleotide k 94.1 0.37 8E-06 44.3 9.0 54 165-219 89-142 (179)
495 PRK14737 gmk guanylate kinase; 94.1 0.051 1.1E-06 52.0 3.9 37 39-75 5-42 (186)
496 PRK11248 tauB taurine transpor 94.1 0.045 9.8E-07 55.2 3.7 23 40-62 29-51 (255)
497 PRK10908 cell division protein 94.1 0.045 9.7E-07 53.9 3.6 29 40-70 30-58 (222)
498 TIGR03864 PQQ_ABC_ATP ABC tran 94.1 0.044 9.6E-07 54.5 3.6 23 40-62 29-51 (236)
499 cd03243 ABC_MutS_homologs The 94.1 0.77 1.7E-05 44.4 12.2 22 40-61 31-52 (202)
500 cd03253 ABCC_ATM1_transporter 94.1 0.045 9.8E-07 54.4 3.6 29 40-70 29-57 (236)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.5e-96 Score=812.63 Aligned_cols=606 Identities=44% Similarity=0.619 Sum_probs=548.3
Q ss_pred CccchhhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEE
Q 007054 1 MTTMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQL 80 (620)
Q Consensus 1 ~~~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l 80 (620)
|..|+.+++.+|++|++|..++... ++.+|+|+|||.||+||||++|+++|++|+|||.|+|||+|++++|
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~~~---------~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL 71 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGSSS---------FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQL 71 (657)
T ss_pred CchhhhccccchHHHHHHHHhcCCC---------cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeec
Confidence 4578999999999999999998332 3599999999999999999999999999999999999999999999
Q ss_pred EecCCCCcceeeee-cCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCC
Q 007054 81 HKTEDGSQEYAEFL-HLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (620)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~ 159 (620)
.+..++..+|++|. |.+...++||.+++++|..+++++.|.++++|+.+|.+++++|+++++|+||+||++++++++||
T Consensus 72 ~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp 151 (657)
T KOG0446|consen 72 SIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQP 151 (657)
T ss_pred ccccCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCC
Confidence 99988888999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCC
Q 007054 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (620)
Q Consensus 160 ~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l 239 (620)
+++..++++|++.|+..+++|||+|.+||.|+++++++++++++||.|.|||+|+||+|+++.|++..+.+.|...++++
T Consensus 152 ~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~ 231 (657)
T KOG0446|consen 152 DDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKV 231 (657)
T ss_pred ccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007054 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (620)
Q Consensus 240 g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~ 319 (620)
||++|+||++++++...++.++...|..||.+++.|..+.+++|+++|.+.|...|..||++++|.+...|+..+.+.+.
T Consensus 232 g~v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~ 311 (657)
T KOG0446|consen 232 GYVGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQD 311 (657)
T ss_pred ceeeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCC---C-----CCCchhHHHHhhhHHHHhccCCccccCChhhHH
Q 007054 320 EMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGG---R-----PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVK 391 (620)
Q Consensus 320 eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~---~-----~~~~~i~~~f~~~f~~~~~~~~~~~~~~~~~i~ 391 (620)
+|.++|. .++..+....+..++..|+..+...+.|. + .||+|++++|+..|...+.++++.+.+...+|+
T Consensus 312 el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~ 389 (657)
T KOG0446|consen 312 ELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIE 389 (657)
T ss_pred HHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHH
Confidence 9999995 22222233456677777777777777776 2 478999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCchhHHHHHHHhHHhhhhchHHHHHHHHHHHHHHHHHHHhchhccccChhhHHHHHHHHHHHHHHH
Q 007054 392 KVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALER 471 (620)
Q Consensus 392 ~~i~~~~G~~p~~f~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~v~~~l~~ 471 (620)
+++.|++|++|++|.|+.+|+.+++++|+.+++|+++||+.|++++..+++.++..+ ++.|||.|+.++..++.+.+++
T Consensus 390 ~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~ 468 (657)
T KOG0446|consen 390 KLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAE 468 (657)
T ss_pred HHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998753 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccH---HHhhhch---HHHhh--------------h-C-CCCCCC----C--C------CC
Q 007054 472 FRDEGRKTVIRLVDMEASYLTV---EFFRKLP---QEVEK--------------A-G-NPGNSG----N--T------AS 517 (620)
Q Consensus 472 ~~~~a~~~i~~li~~E~~yi~~---d~~~~~~---~~~~~--------------~-~-~~~~~~----~--~------~~ 517 (620)
+++++++++..+|+||.+|+|| ||++... +.... . . .+..+. + . .+
T Consensus 469 ~~~~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (657)
T KOG0446|consen 469 GLDETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPS 548 (657)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhccc
Confidence 9999999999999999999987 5655431 11111 0 0 000000 0 0 00
Q ss_pred Ccc-------cCCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhCCCH
Q 007054 518 QAV-------DRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDP 590 (620)
Q Consensus 518 ~~~-------~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~ 590 (620)
+.. ......+++.|..++.+||+||+++++|+|||+|||+||+.+++.|+++|++.||.. .+.+++||+|+|
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~-~~~~~~ll~E~~ 627 (657)
T KOG0446|consen 549 DIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAG-DEQLESLLKEDP 627 (657)
T ss_pred chhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHccCH
Confidence 000 111123678899999999999999999999999999999999999999999999992 345999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007054 591 AMMERRLQCAKRLELYKAARDEIDSVSWA 619 (620)
Q Consensus 591 ~i~~kR~~l~~~l~~L~~A~~~l~~~~~~ 619 (620)
.++.+|+.+++|+++|++|+.++..+.|+
T Consensus 628 ~i~~~R~~~~~~l~~L~~a~~ii~~~~~~ 656 (657)
T KOG0446|consen 628 RIKRRRELQQKRLLALQKALSILATVAQA 656 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999886
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=3.5e-46 Score=366.69 Aligned_cols=239 Identities=62% Similarity=0.972 Sum_probs=223.6
Q ss_pred chhhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEec
Q 007054 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (620)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~ 83 (620)
|+.|++++|++++++..+|.... +++|+|+|||+||+||||+||+|+|..++|++.|.|||||+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~---------i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~ 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC
Confidence 68999999999999989986543 599999999999999999999999999899999999999999999875
Q ss_pred CCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHH
Q 007054 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (620)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~ 163 (620)
. .+|+.+.+.+++.+.+++++.+.|+++++.+.|.+++||+++|++++++|++++++||||||+...+..+|+.++.
T Consensus 72 ~---~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~ 148 (240)
T smart00053 72 S---TEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIE 148 (240)
T ss_pred C---CcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHH
Confidence 3 5788888888889999999999999999999999999999999999999999999999999998877777778888
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeE
Q 007054 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (620)
Q Consensus 164 ~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~ 243 (620)
..+++++..|++++++|||+|++++.|+.+++++++++.+++.+.|||+|+||+|..++++++.++++|+..++++||++
T Consensus 149 ~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~ 228 (240)
T smart00053 149 EQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIG 228 (240)
T ss_pred HHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCChhhhhc
Q 007054 244 IVNRSQADINR 254 (620)
Q Consensus 244 v~~~s~~~~~~ 254 (620)
|+||+++|++.
T Consensus 229 v~nr~~~d~~~ 239 (240)
T smart00053 229 VVNRSQKDIEG 239 (240)
T ss_pred EECCChHHhhc
Confidence 99999998753
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=5.3e-46 Score=382.64 Aligned_cols=271 Identities=32% Similarity=0.530 Sum_probs=242.2
Q ss_pred HHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHH
Q 007054 226 ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPS 305 (620)
Q Consensus 226 ~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~ 305 (620)
+.+++.|+.++|++||++|+|||++|++...++.+++..|..||.++++|+...+++|+++|+.+|+++|.+||+++||.
T Consensus 1 ~~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~ 80 (295)
T PF01031_consen 1 AMDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPS 80 (295)
T ss_dssp SHHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcH
Confidence 36889999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCC---------CCchhHHHHhhhHHHHh
Q 007054 306 ITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP---------GGDRIYGVFDNQLPAAL 376 (620)
Q Consensus 306 l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~---------~~~~i~~~f~~~f~~~~ 376 (620)
|+.+|+..|.+++.+|++||++++.+.+++..+|++++++|++.+.++++|.|. ||++|.++|++.|...+
T Consensus 81 l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~ 160 (295)
T PF01031_consen 81 LKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFL 160 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhh
Confidence 999999999999999999999998666777888999999999999999999986 47999999999999999
Q ss_pred ccCCccccCChhhHHHHHHhhcCCCCCCCCchhHHHHHHHhHHhhhhchHHHHHHHHHHHHHHHHHHHhchhccccChhh
Q 007054 377 RKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPT 456 (620)
Q Consensus 377 ~~~~~~~~~~~~~i~~~i~~~~G~~p~~f~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~ 456 (620)
.+.++...+++++|+++|++++|+++++|+|+.+|+.||+++|++|++||.+|++.|++++.+++..++. .+|.+||+
T Consensus 161 ~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~ 238 (295)
T PF01031_consen 161 EKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPN 238 (295)
T ss_dssp HHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHH
T ss_pred hhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchH
Confidence 9888877889999999999999999999999999999999999999999999999999999999999886 48999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH---HHhhh
Q 007054 457 LQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTV---EFFRK 498 (620)
Q Consensus 457 L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~yi~~---d~~~~ 498 (620)
|++++.+++.++++++.++|+++|+++|+||++|+|| +|...
T Consensus 239 L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~ 283 (295)
T PF01031_consen 239 LKEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGE 283 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHH
Confidence 9999999999999999999999999999999999998 45543
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=273.40 Aligned_cols=281 Identities=28% Similarity=0.458 Sum_probs=229.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCC----CccCChHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPK----RRFTDFSMVRKE 110 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~ 110 (620)
..||+|||||+||+||+|+|+.+....+||||+| ..||.|..+.|..+| -..+.|..... -+..|+.+++.+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGP---yHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGP---HHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCc---chhhhhccccccccccchhHHHHHHHH
Confidence 5899999999999999999999999999999999 799999999987654 23333332221 234688899999
Q ss_pred HHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch
Q 007054 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD 190 (620)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d 190 (620)
++-.+......++.+|+.+|.+.+.||+.+.++|||+||++.+.+.|...+..+.+-.|.+.||++|++||||+.+.+.|
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 98888777777899999999999999999999999999999988888888889999999999999999999999999999
Q ss_pred hcchHHHHHHHHhCCCCCceEEEeccCCCCCCC----CcHHHHHhCCccccC-CCeeEEeeCChhhhhccCCHHHHHHHH
Q 007054 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKG----TNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARRKE 265 (620)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~----~~~~~~l~~~~~~l~-lg~~~v~~~s~~~~~~~~~~~~~~~~e 265 (620)
...+-.-.+...+||.|.|||+|+||+|+.+.. ....+++.|+..|.+ +||++|+.-.+. ..-++..-+..|
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn---ssdSIdaIR~YE 539 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN---SSESIEAIREYE 539 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC---cchhHHHHHHHH
Confidence 888888889999999999999999999998653 246789999999876 999999875442 223555667899
Q ss_pred HHHhcCCCCCCcc---ccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007054 266 REYFATSPDYGHL---AGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (620)
Q Consensus 266 ~~ff~~~~~~~~~---~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~eL~ 322 (620)
.+||.++..+..- +..+.+.+|.-..+.-++..+++++-.-.......--.++.|..
T Consensus 540 E~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFNLEtEWK 599 (980)
T KOG0447|consen 540 EEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFNLETEWK 599 (980)
T ss_pred HHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 9999987654322 35678888888888888888887766555555544444555544
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.91 E-value=5.4e-24 Score=178.20 Aligned_cols=89 Identities=43% Similarity=0.592 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhCCCHHHHHHHHHHHHHHHH
Q 007054 526 GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLEL 605 (620)
Q Consensus 526 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~l~~ 605 (620)
.++++|+.++.|||+||+|+++|+|||+||||||+.+++.||++|++.||+++. +++||+|||+|++||+.|++++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~--~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEEL--LDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCccc--HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999765 999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 007054 606 YKAARDEIDSV 616 (620)
Q Consensus 606 L~~A~~~l~~~ 616 (620)
|++|+++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 6
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.89 E-value=2.5e-22 Score=189.64 Aligned_cols=167 Identities=37% Similarity=0.507 Sum_probs=133.8
Q ss_pred EEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceee-eecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAE-FLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
|+|+|.+|||||||||||+|.+++|++.+.||++|+++++...+.....+.. ........+.++..+.+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7999999999999999999999999999999999999999877654321111 122235677889999999988887777
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l 199 (620)
+....++...+.+....+...+++||||||+.+.... ..+++.+|+..+|++| +|.+++.++..++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~---------~~~~~~~~~~~~d~vi-~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE---------HTEITEEYLPKADVVI-FVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT---------TSHHHHHHHSTTEEEE-EEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhh---------hHHHHHHhhccCCEEE-EEeccCcccchHHHHHH
Confidence 6667788888888899999999999999999874332 1388999998888765 56678888888888889
Q ss_pred HHHhCCCCCceEEEeccC
Q 007054 200 AREVDPTGERTFGVLTKL 217 (620)
Q Consensus 200 ~~~~~~~~~rti~VltK~ 217 (620)
.+..++.+.++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 7
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.86 E-value=1.5e-21 Score=164.18 Aligned_cols=88 Identities=27% Similarity=0.433 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhCCCHHHHHHHHHHHHHHHHH
Q 007054 527 HFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELY 606 (620)
Q Consensus 527 ~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~l~~L 606 (620)
++++|++++.|||+||+|||+|+|||+|+||||+.+.+.|+.+|+..||..+. +.+||+|||+++++|+.|++++++|
T Consensus 5 ~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~--~~~Ll~Ed~~i~~kR~~l~~~~~~L 82 (92)
T PF02212_consen 5 EVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEED--LEELLQEDPEIAEKREELKKKLERL 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG--CCCCT--GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHH--HHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999875 9999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 007054 607 KAARDEIDSV 616 (620)
Q Consensus 607 ~~A~~~l~~~ 616 (620)
++|+++|++|
T Consensus 83 ~~A~~~L~~~ 92 (92)
T PF02212_consen 83 KKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHcC
Confidence 9999999876
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=2e-18 Score=170.19 Aligned_cols=182 Identities=21% Similarity=0.364 Sum_probs=122.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.-.|++||.||+|||||+|+|+|.++ .++|+.| + + ....
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~---Q---T------------------------------TR~~ 44 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKP---Q---T------------------------------TRNR 44 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCc---c---h------------------------------hhhh
Confidence 34799999999999999999999998 7777777 1 1 0112
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
+.| |...+..++++|||||+..... ...+.+.+.+.+.+...|+|++ |++++..+...+.
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~pk~-----~l~~~m~~~a~~sl~dvDlilf-vvd~~~~~~~~d~- 104 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKPKH-----ALGELMNKAARSALKDVDLILF-VVDADEGWGPGDE- 104 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCcch-----HHHHHHHHHHHHHhccCcEEEE-EEeccccCCccHH-
Confidence 233 5555578999999999998532 2667788888899999998855 5566665644443
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCCh---hhhhccCCHHHHHHHHHHHhcCCCC
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ---ADINRNIDMIVARRKEREYFATSPD 274 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~---~~~~~~~~~~~~~~~e~~ff~~~~~ 274 (620)
.++..+.....|.|+++||+|...+......+.. ......+|..+.+.|+ .+++.+.........|.++|.....
T Consensus 105 ~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 105 FILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred HHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 3555555556899999999999987764333332 1223345555555555 4555555656666666666665555
Q ss_pred CCcccccc
Q 007054 275 YGHLAGKM 282 (620)
Q Consensus 275 ~~~~~~~~ 282 (620)
+++.++++
T Consensus 183 itD~~~rf 190 (298)
T COG1159 183 ITDRPERF 190 (298)
T ss_pred ccCChHHH
Confidence 55555443
No 9
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=1.4e-13 Score=148.75 Aligned_cols=211 Identities=15% Similarity=0.203 Sum_probs=114.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCccee-e--eec------------CCC-----
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYA-E--FLH------------LPK----- 98 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~-~--~~~------------~~~----- 98 (620)
|.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.+++........-+. . |.. ...
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e 149 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD 149 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH
Confidence 89999999999999999999999999999999999999777544322211110 0 000 000
Q ss_pred --CccCChHHHHHHHHHH----------------------HhhhcCC-CCCcc--------C-ccEEEEEecCCC-----
Q 007054 99 --RRFTDFSMVRKEIQDE----------------------TDRVTGK-TKQIS--------P-IPIHLSIYSPNV----- 139 (620)
Q Consensus 99 --~~~~~~~~v~~~i~~~----------------------~~~~~g~-~~~~s--------~-~~i~l~i~~~~~----- 139 (620)
....|..++...+.+. ..+++.. +..|. . .+|.++.....+
T Consensus 150 ~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~ 229 (741)
T PRK09866 150 VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP 229 (741)
T ss_pred HHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccccc
Confidence 0001122222111110 0000000 01111 0 123344333332
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCC--ceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGE--RTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~--rti~VltK~ 217 (620)
.+++||||||+..... ..+..+..+.+..+|+|+++| +++... ......+++.+...++ ++|+|+||+
T Consensus 230 ~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eADvVLFVV-Dat~~~-s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARASAVLAVL-DYTQLK-SISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred CCEEEEECCCCCCccc--------hHHHHHHHHHHhhCCEEEEEE-eCCCCC-ChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 6899999999986321 223444445799999876654 555433 2233446666665554 999999999
Q ss_pred CCCCCCCcH----HHHHhCCccccCC---CeeEEeeCChhhhhccCCHH
Q 007054 218 DLMDKGTNA----LDVLEGRSYRLQH---PWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 218 D~~~~~~~~----~~~l~~~~~~l~l---g~~~v~~~s~~~~~~~~~~~ 259 (620)
|..++..+. .+.+......... ..++|+...+.+++..++.+
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI 348 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHEL 348 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHH
Confidence 998644322 2222111011122 34566666665555444433
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=5.8e-18 Score=155.43 Aligned_cols=149 Identities=25% Similarity=0.378 Sum_probs=93.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|.||+|||||+|+|+|... .++ +.++.+.+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~------~v~---------n~pG~Tv~~----------------------------- 37 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ------KVG---------NWPGTTVEK----------------------------- 37 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE------EEE---------ESTTSSSEE-----------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------eec---------CCCCCCeee-----------------------------
Confidence 799999999999999999999985 122 222221111
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCCchhcchHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~~~iil~V~~a~~d~~~~~~l 197 (620)
..- ........+.||||||+++....+ .-+.++.+|+ .++|.+|+++++.+ .+..+
T Consensus 38 ----------~~g-~~~~~~~~~~lvDlPG~ysl~~~s-------~ee~v~~~~l~~~~~D~ii~VvDa~~----l~r~l 95 (156)
T PF02421_consen 38 ----------KEG-IFKLGDQQVELVDLPGIYSLSSKS-------EEERVARDYLLSEKPDLIIVVVDATN----LERNL 95 (156)
T ss_dssp ----------EEE-EEEETTEEEEEEE----SSSSSSS-------HHHHHHHHHHHHTSSSEEEEEEEGGG----HHHHH
T ss_pred ----------eeE-EEEecCceEEEEECCCcccCCCCC-------cHHHHHHHHHhhcCCCEEEEECCCCC----HHHHH
Confidence 000 111123688999999998854331 2245667776 57898877665443 45678
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
.++.++...|.|+++|+||+|.+.+.....+ .......++.+.+++++++.++++++
T Consensus 96 ~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id-~~~Ls~~Lg~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 96 YLTLQLLELGIPVVVVLNKMDEAERKGIEID-AEKLSERLGVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp HHHHHHHHTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCHHHHHHcCCEEC-HHHHHHHhCCCEEEEEeCCCcCHHHH
Confidence 8888988889999999999999876542211 11112345667777777777766543
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=2.5e-15 Score=156.75 Aligned_cols=179 Identities=21% Similarity=0.276 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCC
Q 007054 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED 85 (620)
Q Consensus 6 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~ 85 (620)
.+..+..++.++++...... ...+--.||++|.||+|||||||||+|.+. .+||..|
T Consensus 193 ~l~~~~~~l~~ll~~~~~g~--------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~---------- 249 (454)
T COG0486 193 KLEELIAELDELLATAKQGK--------ILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA---------- 249 (454)
T ss_pred HHHHHHHHHHHHHHhhhhhh--------hhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC----------
Confidence 34455566666555544322 223566999999999999999999999988 8999887
Q ss_pred CCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHH
Q 007054 86 GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED 165 (620)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~ 165 (620)
|++.++-...+.+ ++..+.|+||.|+..+... +++.
T Consensus 250 ----------------------------------GTTRDviee~i~i-----~G~pv~l~DTAGiRet~d~-----VE~i 285 (454)
T COG0486 250 ----------------------------------GTTRDVIEEDINL-----NGIPVRLVDTAGIRETDDV-----VERI 285 (454)
T ss_pred ----------------------------------CCccceEEEEEEE-----CCEEEEEEecCCcccCccH-----HHHH
Confidence 4444333333332 3678999999999864321 3333
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEe
Q 007054 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIV 245 (620)
Q Consensus 166 ~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~ 245 (620)
--+-.++.++++|.|++ |.+++..+...+ ..+.. ..+.+.++++|+||.|+..+..... + ....+..++.++
T Consensus 286 GIeRs~~~i~~ADlvL~-v~D~~~~~~~~d-~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~--~---~~~~~~~~i~iS 357 (454)
T COG0486 286 GIERAKKAIEEADLVLF-VLDASQPLDKED-LALIE-LLPKKKPIIVVLNKADLVSKIELES--E---KLANGDAIISIS 357 (454)
T ss_pred HHHHHHHHHHhCCEEEE-EEeCCCCCchhh-HHHHH-hcccCCCEEEEEechhcccccccch--h---hccCCCceEEEE
Confidence 34567788999998865 555655443333 33333 5566899999999999997653110 0 122334567888
Q ss_pred eCChhhhhccCCHH
Q 007054 246 NRSQADINRNIDMI 259 (620)
Q Consensus 246 ~~s~~~~~~~~~~~ 259 (620)
...+.+++.+...+
T Consensus 358 a~t~~Gl~~L~~~i 371 (454)
T COG0486 358 AKTGEGLDALREAI 371 (454)
T ss_pred ecCccCHHHHHHHH
Confidence 88877766544433
No 12
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.66 E-value=6.2e-16 Score=157.45 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=96.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccC-cccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.|+|+|.+|+|||||+|+|+|.++..++. ..+|+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~------------------------------------------- 38 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR------------------------------------------- 38 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-------------------------------------------
Confidence 69999999999999999999987622111 1122221
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
+. .+...+...+.|+||||+..... ...+.+...+..++..+|.+++++++.. .. ..+ ..
T Consensus 39 -----------i~-~i~~~~~~qii~vDTPG~~~~~~-----~l~~~~~~~~~~~l~~aDvvl~VvD~~~-~~-~~~-~~ 98 (270)
T TIGR00436 39 -----------IS-GIHTTGASQIIFIDTPGFHEKKH-----SLNRLMMKEARSAIGGVDLILFVVDSDQ-WN-GDG-EF 98 (270)
T ss_pred -----------EE-EEEEcCCcEEEEEECcCCCCCcc-----hHHHHHHHHHHHHHhhCCEEEEEEECCC-CC-chH-HH
Confidence 00 12222334689999999976321 1334455567788999999877665543 22 211 23
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccC-CCeeEEeeCChhhhhccCCHHHHHHHH
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARRKE 265 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-lg~~~v~~~s~~~~~~~~~~~~~~~~e 265 (620)
+...+...+.|+++|+||+|+..+.. ..+.+........ ..++.+++..+.+++...+.......+
T Consensus 99 i~~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 99 VLTKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 44445556789999999999974332 2211111011111 256777887777776665555444333
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=157.93 Aligned_cols=156 Identities=23% Similarity=0.301 Sum_probs=107.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
|.|++||.||+|||||+|+|+|.+. .++...|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~p------------------------------------------- 35 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTP------------------------------------------- 35 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCC-------------------------------------------
Confidence 8999999999999999999999986 4555444
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
|++.|.+.-... +....+.+|||+|+.... ++.+...+.+.+...+.++|+||+ |+++..++ +.....
T Consensus 36 -----GvTRDr~y~~~~-~~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilf-vVD~~~Gi-t~~D~~ 103 (444)
T COG1160 36 -----GVTRDRIYGDAE-WLGREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILF-VVDGREGI-TPADEE 103 (444)
T ss_pred -----CCccCCccceeE-EcCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEE-EEeCCCCC-CHHHHH
Confidence 122333222222 223459999999998633 234888999999999999998866 55677777 555567
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCe-eEEeeCChhhhhccCCHH
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPW-VGIVNRSQADINRNIDMI 259 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~-~~v~~~s~~~~~~~~~~~ 259 (620)
+|+.+.+.++|+|+|+||+|..+......++ +.+++|- +++++-.+.++.++.+..
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----yslG~g~~~~ISA~Hg~Gi~dLld~v 160 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYEF-----YSLGFGEPVPISAEHGRGIGDLLDAV 160 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHHH-----HhcCCCCceEeehhhccCHHHHHHHH
Confidence 8888888889999999999988544333332 3444442 344444444555444433
No 14
>PRK00089 era GTPase Era; Reviewed
Probab=99.62 E-value=3.4e-15 Score=153.99 Aligned_cols=161 Identities=22% Similarity=0.340 Sum_probs=95.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
..|+|+|.+|||||||+|+|+|.++ ..++..| . ++
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~------~---tt------------------------------- 40 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKP------Q---TT------------------------------- 40 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCce-----eecCCCC------C---cc-------------------------------
Confidence 4799999999999999999999976 2333322 0 00
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
...+. .+......+++++||||+..... ...+.+...+..++..+|+++++++... .+ +.....
T Consensus 41 --------~~~i~-~i~~~~~~qi~~iDTPG~~~~~~-----~l~~~~~~~~~~~~~~~D~il~vvd~~~-~~-~~~~~~ 104 (292)
T PRK00089 41 --------RHRIR-GIVTEDDAQIIFVDTPGIHKPKR-----ALNRAMNKAAWSSLKDVDLVLFVVDADE-KI-GPGDEF 104 (292)
T ss_pred --------cccEE-EEEEcCCceEEEEECCCCCCchh-----HHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-ChhHHH
Confidence 00000 12222346899999999976331 1344555667778899999977665443 33 233344
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCcccc-CCCeeEEeeCChhhhhccCCHHH
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
++..+...+.++++|+||+|+..........+....... ...++.+++..+.++++......
T Consensus 105 i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~ 167 (292)
T PRK00089 105 ILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIA 167 (292)
T ss_pred HHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence 555555557899999999999843322222222111111 12345555555555555444443
No 15
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1e-14 Score=145.14 Aligned_cols=158 Identities=18% Similarity=0.307 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCC
Q 007054 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED 85 (620)
Q Consensus 6 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~ 85 (620)
.+.++++++.+-+.-++.....-..||..+.++|+|+|+|.||+|||||+++|++.+. -+-.+|
T Consensus 136 R~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~YP---------- 199 (346)
T COG1084 136 RVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPYP---------- 199 (346)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCCC----------
Confidence 3445666666666666543321224788888999999999999999999999999874 111122
Q ss_pred CCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHH
Q 007054 86 GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED 165 (620)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~ 165 (620)
|+...|.+.....+...+.+|||||+.+-+. +-.-.
T Consensus 200 ---------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl-----~ErN~ 235 (346)
T COG1084 200 ---------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPL-----EERNE 235 (346)
T ss_pred ---------------------------------------ccccceeEeeeecCCceEEEecCCcccCCCh-----HHhcH
Confidence 4455566666666778899999999987443 23334
Q ss_pred HHHHHHHhhcC-CCeEEEEeccCCc-hhcchHHHHHHHHhCCCC-CceEEEeccCCCCCCC
Q 007054 166 IESMVRSYVEK-PNSVILAISPANQ-DIATSDAMKLAREVDPTG-ERTFGVLTKLDLMDKG 223 (620)
Q Consensus 166 ~~~~~~~yi~~-~~~iil~V~~a~~-d~~~~~~l~l~~~~~~~~-~rti~VltK~D~~~~~ 223 (620)
++..+-..++. .++|+++++++.. ++.-..-..|..++.+.- .+++.|+||+|..+.+
T Consensus 236 IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 236 IERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 55555556666 4555555554332 444445556677776543 5899999999999655
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.55 E-value=9.5e-14 Score=145.78 Aligned_cols=127 Identities=21% Similarity=0.344 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|+|++||.+|+|||||+|+|+|.++...+...+|+-|+.-
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~-------------------------------------- 229 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR-------------------------------------- 229 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE--------------------------------------
Confidence 679999999999999999999999876444444555544221
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~-- 194 (620)
.+..++...+.|+||||+.+. -|++..+.++. +..++.++|+++++++.++.+...+
T Consensus 230 ----------------~i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~ 288 (351)
T TIGR03156 230 ----------------RLDLPDGGEVLLTDTVGFIRD----LPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIE 288 (351)
T ss_pred ----------------EEEeCCCceEEEEecCccccc----CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHH
Confidence 133334568899999998652 23345555554 4457889999877765543322111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.+..+.+.+...+.++++|+||+|+.+.
T Consensus 289 ~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 289 AVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 1234566665556899999999999753
No 17
>PRK15494 era GTPase Era; Provisional
Probab=99.53 E-value=4.5e-14 Score=147.95 Aligned_cols=199 Identities=19% Similarity=0.266 Sum_probs=115.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
.|++||.+|+|||||+|+|+|..+ .+++..|
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~-------------------------------------------- 84 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKV-------------------------------------------- 84 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCce-----eeccCCC--------------------------------------------
Confidence 899999999999999999999876 2222222
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l 199 (620)
+.+. +.+. .+...+...+.|+||||+..... .....+...+..++..+|++++++++ ...+...+ ..+
T Consensus 85 ~tTr----~~~~-~~~~~~~~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~VvD~-~~s~~~~~-~~i 152 (339)
T PRK15494 85 QTTR----SIIT-GIITLKDTQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLLIIDS-LKSFDDIT-HNI 152 (339)
T ss_pred CCcc----CcEE-EEEEeCCeEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEEEEEC-CCCCCHHH-HHH
Confidence 0000 0000 01112235789999999864221 13344455556678899999887654 33332222 234
Q ss_pred HHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCcc
Q 007054 200 AREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL 278 (620)
Q Consensus 200 ~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~ 278 (620)
+..+...+.+.|+|+||+|+.+... +..+.+.. ......++++++.++.+++..+..+.....|.+++.....+++.
T Consensus 153 l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 153 LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4444445678899999999865321 11222211 11123577888888888888888777777777766666555555
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhH
Q 007054 279 AGKMGSEYLAKLLSKHLESVIRSRIP 304 (620)
Q Consensus 279 ~~~~g~~~L~~~L~~~l~~~i~~~lP 304 (620)
+.++=+ .+-+.+.+..++.+.+|
T Consensus 231 ~~~~~~---~eiiRe~~~~~~~~EiP 253 (339)
T PRK15494 231 PMRFIA---AEITREQLFLNLQKELP 253 (339)
T ss_pred CHHHHH---HHHHHHHHHhhCCcccC
Confidence 443221 22233334444455555
No 18
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=8.3e-14 Score=130.59 Aligned_cols=128 Identities=26% Similarity=0.377 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.+|.|+++|..|+|||||||+|+|..-|.|-+. .| +.++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSk----tP---------GrTq---------------------------- 61 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSK----TP---------GRTQ---------------------------- 61 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCC----CC---------Cccc----------------------------
Confidence 789999999999999999999999764433221 11 1111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEE--EEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVI--LAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~ii--l~V~~a~~d~~~~ 194 (620)
..- .+.. ...+.|||+||++--.. |....+.+..++..|++....+. +.++++...+ ..
T Consensus 62 -----------~iN---ff~~-~~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~-~~ 122 (200)
T COG0218 62 -----------LIN---FFEV-DDELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP-KD 122 (200)
T ss_pred -----------eeE---EEEe-cCcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC-cH
Confidence 011 1111 12388999999986432 34577889999999998743232 2355666665 44
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~ 224 (620)
...++...+...+.++++|+||+|.+..+.
T Consensus 123 ~D~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 123 LDREMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 455788888888999999999999998764
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=3.3e-14 Score=148.10 Aligned_cols=157 Identities=19% Similarity=0.297 Sum_probs=104.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+..+|+|||.||+|||||+|+|+|.+. .++...|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCC-----------------------------------------
Confidence 467999999999999999999999976 2222222
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
| -+.+.|...+. .+...+++|||.|+.+...-. +.++..--.-+...+..+|+++| |.+|..++..|+
T Consensus 211 ---G----TTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~~aI~~a~vvll-viDa~~~~~~qD- 278 (444)
T COG1160 211 ---G----TTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTLKAIERADVVLL-VIDATEGISEQD- 278 (444)
T ss_pred ---C----ccccceeeeEE-ECCeEEEEEECCCCCcccccc--cceEEEeehhhHhHHhhcCEEEE-EEECCCCchHHH-
Confidence 2 23344554443 456789999999998744321 11111111234567888998755 667777885554
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCC--ccccCCCeeEEeeCChhh
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGR--SYRLQHPWVGIVNRSQAD 251 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~lg~~~v~~~s~~~ 251 (620)
++++..+...|...++|+||||++++.+...+....+ .....++|.++...|+..
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence 5799999999999999999999998743322222211 122347888887777653
No 20
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=1.3e-13 Score=146.38 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
+..|++||.||||||||||+|++...-......+|+.|..-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 458999999999999999999998643333445666662222
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCC---chhcch
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---QDIATS 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~---~d~~~~ 194 (620)
+...+...++|+||||+...+..+ ..+.....++++.+++++++++.+. .+. ..
T Consensus 201 ----------------v~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~-~e 257 (390)
T PRK12298 201 ----------------VRVDDERSFVVADIPGLIEGASEG------AGLGIRFLKHLERCRVLLHLIDIAPIDGSDP-VE 257 (390)
T ss_pred ----------------EEeCCCcEEEEEeCCCccccccch------hhHHHHHHHHHHhCCEEEEEeccCcccccCh-HH
Confidence 122223458999999998744321 1122223457889999988775441 222 11
Q ss_pred HHHHHHHHhCC-----CCCceEEEeccCCCCCCCCcHHHHHhCCccccC--CCeeEEeeCChhhhhccCCHHHHHHHHHH
Q 007054 195 DAMKLAREVDP-----TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ--HPWVGIVNRSQADINRNIDMIVARRKERE 267 (620)
Q Consensus 195 ~~l~l~~~~~~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~--lg~~~v~~~s~~~~~~~~~~~~~~~~e~~ 267 (620)
....+.+++.. ...+.|+|+||+|+..... ..+.+......+. ..++.+++.+..+++.....+.....+.+
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 11223333322 3579999999999975432 2222221111111 24567777777777766665555444443
Q ss_pred H
Q 007054 268 Y 268 (620)
Q Consensus 268 f 268 (620)
+
T Consensus 337 ~ 337 (390)
T PRK12298 337 R 337 (390)
T ss_pred c
Confidence 3
No 21
>PRK11058 GTPase HflX; Provisional
Probab=99.51 E-value=2.5e-13 Score=145.92 Aligned_cols=127 Identities=19% Similarity=0.320 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.+|.|++||.+|||||||+|+|+|.++...+...+|+-|+.-
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~-------------------------------------- 237 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR-------------------------------------- 237 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE--------------------------------------
Confidence 679999999999999999999999876433333444443211
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~-- 194 (620)
.+..++...+.|+||||+.+. .|.+..+.+.. +..++..+|.+|++++.++......
T Consensus 238 ----------------~i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 238 ----------------RIDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIE 296 (426)
T ss_pred ----------------EEEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHH
Confidence 122233346789999998652 23344455544 4567889999988776554322111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
....+...+...+.++|+|+||+|+.+.
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 1234566666567899999999999753
No 22
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=1.8e-13 Score=142.48 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
-++.|++||.||||||||||+|++.+.-......+|..|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 4579999999999999999999997632223345666662211
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~ 194 (620)
+...+...++++||||+...+..+ ..+.....++++.++++|++++.++.+ +.. .
T Consensus 200 -----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~ 256 (335)
T PRK12299 200 -----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYK 256 (335)
T ss_pred -----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHH
Confidence 122234578999999998744321 223344566788899888877655433 111 1
Q ss_pred HHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 195 DAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 195 ~~l~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
.+...+...++ ...+.++|+||+|+.+......+............++.+++.+..++++.+.
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 12223333333 3679999999999975432111111110111223456666665555544433
No 23
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2e-13 Score=148.54 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=106.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+++|+||+||||++|+|+|.+. .+. |.++.+.+..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~Vg---------NwpGvTVEkk--------------------------- 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KVG---------NWPGVTVEKK--------------------------- 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------eec---------CCCCeeEEEE---------------------------
Confidence 4699999999999999999999975 222 2222222111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~~ 196 (620)
.| ........+++|||||+++....+ .-+..+++|+. ++|+||.+|+++| -...
T Consensus 42 eg-------------~~~~~~~~i~ivDLPG~YSL~~~S-------~DE~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG-------------KLKYKGHEIEIVDLPGTYSLTAYS-------EDEKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE-------------EEEecCceEEEEeCCCcCCCCCCC-------chHHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 11 122234569999999999865442 22566788875 4788877666655 5678
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
+.+.-++-+.|.++|+++|++|...+.....|. ......++.+.+++++..++++++.+...
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~-~~L~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDI-EKLSKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccH-HHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 888888888999999999999998765432221 11235677888888888888776655543
No 24
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.49 E-value=1.7e-12 Score=140.30 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..-++|+++|.+|+|||||+|+|+|.+. .+++..|
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~p---------------------------------------- 235 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIK---------------------------------------- 235 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC----------------------------------------
Confidence 3567999999999999999999999764 2233333
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
|.+. +.+...+.. +...+.++||||+..... .+...--.....|++.+|+++++++..+ .. +.+
T Consensus 236 ----gtTr----d~~~~~i~~-~g~~v~l~DTaG~~~~~~-----~ie~~gi~~~~~~~~~aD~il~V~D~s~-~~-s~~ 299 (442)
T TIGR00450 236 ----GTTR----DVVEGDFEL-NGILIKLLDTAGIREHAD-----FVERLGIEKSFKAIKQADLVIYVLDASQ-PL-TKD 299 (442)
T ss_pred ----CcEE----EEEEEEEEE-CCEEEEEeeCCCcccchh-----HHHHHHHHHHHHHHhhCCEEEEEEECCC-CC-Chh
Confidence 1000 111111111 234578999999865221 0111112356678999999987765443 22 222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
.. +...+...+.++|+|+||+|+... +...+ ...++..++.++..+ .++++.+...
T Consensus 300 ~~-~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~----~~~~~~~~~~vSak~-~gI~~~~~~L 355 (442)
T TIGR00450 300 DF-LIIDLNKSKKPFILVLNKIDLKIN--SLEFF----VSSKVLNSSNLSAKQ-LKIKALVDLL 355 (442)
T ss_pred HH-HHHHHhhCCCCEEEEEECccCCCc--chhhh----hhhcCCceEEEEEec-CCHHHHHHHH
Confidence 22 444454457899999999999754 22111 112334566676665 3444444433
No 25
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.48 E-value=1.6e-12 Score=141.36 Aligned_cols=153 Identities=25% Similarity=0.295 Sum_probs=92.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+-++|+++|.+|+|||||+|+|+|.+.. +++..|
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-----~v~~~~----------------------------------------- 247 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-----IVTDIA----------------------------------------- 247 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-----ccCCCC-----------------------------------------
Confidence 4579999999999999999999998652 222222
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHH-HHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED-IESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~-~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
|.+ .+.+...+.. +...+.++||||+... .+..+. --..+..++..+|+++++++.. ... +.+
T Consensus 248 ---gtT----~d~~~~~i~~-~g~~i~l~DT~G~~~~------~~~ie~~gi~~~~~~~~~aD~il~VvD~s-~~~-s~~ 311 (449)
T PRK05291 248 ---GTT----RDVIEEHINL-DGIPLRLIDTAGIRET------DDEVEKIGIERSREAIEEADLVLLVLDAS-EPL-TEE 311 (449)
T ss_pred ---Ccc----cccEEEEEEE-CCeEEEEEeCCCCCCC------ccHHHHHHHHHHHHHHHhCCEEEEEecCC-CCC-Chh
Confidence 101 1111111111 2356899999998641 112221 1233567899999987766543 332 222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHH
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~ 261 (620)
...+... ..+.++++|+||+|+.+..... ......++.+++.++.+++........
T Consensus 312 ~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~ 367 (449)
T PRK05291 312 DDEILEE--LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKE 367 (449)
T ss_pred HHHHHHh--cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHH
Confidence 3334433 3468999999999997543211 112345778888888777766665543
No 26
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.46 E-value=4.9e-13 Score=129.59 Aligned_cols=124 Identities=21% Similarity=0.350 Sum_probs=76.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCc--ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
+|++||.+|+|||||+|+|+|...+.++.. .+|+.+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~--------------------------------------- 42 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKE--------------------------------------- 42 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCccccccee---------------------------------------
Confidence 799999999999999999999987654431 233222000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH-
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA- 196 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~- 196 (620)
........+++|||||+.+... ..+++...+...+......+|++++++ ++.. + +.+.
T Consensus 43 ----------------~~~~~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~~illVi-~~~~-~-t~~d~ 101 (196)
T cd01852 43 ----------------SAVWDGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPHAFLLVV-PLGR-F-TEEEE 101 (196)
T ss_pred ----------------eEEECCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCEEEEEEE-ECCC-c-CHHHH
Confidence 0011346799999999987542 122333444444444456788776654 5544 4 3333
Q ss_pred --HHHHHHh-CC-CCCceEEEeccCCCCCCC
Q 007054 197 --MKLAREV-DP-TGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 --l~l~~~~-~~-~~~rti~VltK~D~~~~~ 223 (620)
++..+.+ .+ ...++|+|+|++|.+..+
T Consensus 102 ~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 102 QAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 3333333 21 126899999999998654
No 27
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.45 E-value=9.9e-13 Score=128.22 Aligned_cols=129 Identities=23% Similarity=0.386 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...|+|+|+|.+|||||||+|+|+|..+.+.+....|.-|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-------------------------------------- 80 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-------------------------------------- 80 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee--------------------------------------
Confidence 357899999999999999999999987533333333322210
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--c
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--T 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~ 193 (620)
..+..++...+++|||||+.+.. +........... .++..+|.++++++..+.... .
T Consensus 81 ----------------~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 81 ----------------RRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQI 139 (204)
T ss_pred ----------------EEEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHH
Confidence 01222233478999999986522 122223333333 456788988776654432221 1
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
..+..+.+.+...+.++++|+||+|+.+..
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 123345555655568999999999997643
No 28
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.45 E-value=7.5e-13 Score=123.50 Aligned_cols=124 Identities=23% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-.+|+++|.+|+|||||+|+|+|.++.+.+....|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~------------------------------------------- 39 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR------------------------------------------- 39 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-------------------------------------------
Confidence 3589999999999999999999987522221111100
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
..+. .+.......+.++||||+...... ....+......++...|.+++++..... . .+...
T Consensus 40 ----------~~~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~-~-~~~~~ 101 (168)
T cd04163 40 ----------NRIR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEP-I-GEGDE 101 (168)
T ss_pred ----------ceEE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCc-c-CchHH
Confidence 0000 112222457899999998763321 2233455667788999988776655432 2 23333
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCC
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.+.+.+...+.+.++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhcccc
Confidence 3455555557899999999999843
No 29
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.45 E-value=7.1e-13 Score=117.00 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=74.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCccc-CcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
+|+|+|.+|+|||||+|+|+|.+..+.+ ...+|+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~--------------------------------------- 40 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-G--------------------------------------- 40 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-E---------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-e---------------------------------------
Confidence 6899999999999999999997543333 2345554411 1
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
....+...+.|+||||+...... +........+.+.+...|.+|+++. ++... +.....
T Consensus 41 ---------------~~~~~~~~~~~vDtpG~~~~~~~----~~~~~~~~~~~~~~~~~d~ii~vv~-~~~~~-~~~~~~ 99 (116)
T PF01926_consen 41 ---------------QFEYNNKKFILVDTPGINDGESQ----DNDGKEIRKFLEQISKSDLIIYVVD-ASNPI-TEDDKN 99 (116)
T ss_dssp ---------------EEEETTEEEEEEESSSCSSSSHH----HHHHHHHHHHHHHHCTESEEEEEEE-TTSHS-HHHHHH
T ss_pred ---------------eeeeceeeEEEEeCCCCcccchh----hHHHHHHHHHHHHHHHCCEEEEEEE-CCCCC-CHHHHH
Confidence 00112346689999999874321 1111123345556688999877776 44433 444556
Q ss_pred HHHHhCCCCCceEEEecc
Q 007054 199 LAREVDPTGERTFGVLTK 216 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK 216 (620)
+.+++. .+.++++|+||
T Consensus 100 ~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 100 ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHH-TTSEEEEEEES
T ss_pred HHHHHh-cCCCEEEEEcC
Confidence 777776 78999999998
No 30
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.44 E-value=2.2e-13 Score=133.53 Aligned_cols=168 Identities=17% Similarity=0.287 Sum_probs=106.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc-cccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T-r~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-+|+|+|.||+|||||.|.++|.++.|++.-.-| |+-
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~------------------------------------------ 110 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR------------------------------------------ 110 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeee------------------------------------------
Confidence 4899999999999999999999999665544322 111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcchHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDA 196 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~~~ 196 (620)
+.| +...+..++.|+||||+......-+ ......+.+-.+..++.+|+++++++.++.. .-....
T Consensus 111 ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~v 176 (379)
T KOG1423|consen 111 ILG-------------IITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRV 176 (379)
T ss_pred eeE-------------EEecCceEEEEecCCcccccchhhh-HHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHH
Confidence 112 5555668999999999987543211 1112222334566788999998877666322 223445
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcH---HHHHhCC--------------------ccccCCCe------eEEeeC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNA---LDVLEGR--------------------SYRLQHPW------VGIVNR 247 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~---~~~l~~~--------------------~~~l~lg~------~~v~~~ 247 (620)
+...+.+. ..+.|+|+||+|...+.... .+.+.+. .++-..|| |.|+..
T Consensus 177 l~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL 254 (379)
T KOG1423|consen 177 LHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSAL 254 (379)
T ss_pred HHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecc
Confidence 66666665 47899999999988765432 1222111 11223456 567777
Q ss_pred ChhhhhccCCHHHHHHH
Q 007054 248 SQADINRNIDMIVARRK 264 (620)
Q Consensus 248 s~~~~~~~~~~~~~~~~ 264 (620)
++.++++..+.+...+.
T Consensus 255 ~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 255 YGEGIKDLKQYLMSQAP 271 (379)
T ss_pred cccCHHHHHHHHHhcCC
Confidence 77777766665554433
No 31
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.44 E-value=9.2e-13 Score=125.73 Aligned_cols=124 Identities=25% Similarity=0.355 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc--ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (620)
...|+|+|+|.+|+|||||+|+|+|..+.+.-+. .+|..+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 57 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI-------------------------------------- 57 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE--------------------------------------
Confidence 3778999999999999999999999864222111 011100
Q ss_pred HHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC---CeEEEEeccCCch
Q 007054 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQD 190 (620)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~---~~iil~V~~a~~d 190 (620)
....+ + ..+.++||||+..... +......+..+...|++.. +++++++ +++.+
T Consensus 58 ----------------~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vv-d~~~~ 113 (179)
T TIGR03598 58 ----------------NFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLM-DIRHP 113 (179)
T ss_pred ----------------EEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEe-cCCCC
Confidence 01111 1 3789999999865322 2334456677777788653 5665554 55555
Q ss_pred hcchHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+. .....+.+.+...+.++++|+||+|+++.
T Consensus 114 ~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 114 LK-ELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred CC-HHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 53 33345566666678999999999999854
No 32
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.42 E-value=1.1e-12 Score=126.83 Aligned_cols=125 Identities=24% Similarity=0.367 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcc--cccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (620)
..+|.|+|+|.+|+|||||+|+|+|.++.+..++. +|+.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 63 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-------------------------------------- 63 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE--------------------------------------
Confidence 37899999999999999999999997643321111 11110
Q ss_pred HHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCC---eEEEEeccCCch
Q 007054 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQD 190 (620)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~---~iil~V~~a~~d 190 (620)
..... ..++.||||||+.... .+....+.+..++..|+...+ .+++ |.++...
T Consensus 64 -------------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~ 119 (196)
T PRK00454 64 -------------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVL-LIDSRHP 119 (196)
T ss_pred -------------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEE-EEecCCC
Confidence 01111 2579999999976422 233345566777888887654 3433 3444433
Q ss_pred hcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
. +.....+.+.+...+.++++|+||+|+.+.+
T Consensus 120 ~-~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 120 L-KELDLQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred C-CHHHHHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 3 2222234444555578899999999998654
No 33
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=2.7e-12 Score=125.09 Aligned_cols=126 Identities=24% Similarity=0.318 Sum_probs=86.1
Q ss_pred CCCeEE-EEcCCCCCHHHHHHhhhCCCcCccc-CcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 37 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 37 ~lP~Iv-VvG~~ssGKSSllnaL~g~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
.-|-.+ ++|.+|+||||++|||.+.+.-|+. -+.||+-++...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~----------------------------------- 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR----------------------------------- 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-----------------------------------
Confidence 445554 9999999999999999976665655 345555442211
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
...+...++|+||||+.+...+ ...++..+..|+.+.|.+++++.....++.+.
T Consensus 82 --------------------~~~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d 135 (296)
T COG3596 82 --------------------LSYDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLDLVLWLIKADDRALGTD 135 (296)
T ss_pred --------------------hhccccceEEecCCCcccchhh------hHHHHHHHHHHhhhccEEEEeccCCCccccCC
Confidence 1123478999999999875433 35678899999999997655444444444333
Q ss_pred HHHHHHHHhC-C-CCCceEEEeccCCCCCCCCc
Q 007054 195 DAMKLAREVD-P-TGERTFGVLTKLDLMDKGTN 225 (620)
Q Consensus 195 ~~l~l~~~~~-~-~~~rti~VltK~D~~~~~~~ 225 (620)
..+.+.+- + .+.|+++|+|.+|...++.+
T Consensus 136 --~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~ 166 (296)
T COG3596 136 --EDFLRDVIILGLDKRVLFVVTQADRAEPGRE 166 (296)
T ss_pred --HHHHHHHHHhccCceeEEEEehhhhhccccc
Confidence 34555543 2 23899999999999988743
No 34
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.40 E-value=1.9e-12 Score=121.63 Aligned_cols=117 Identities=17% Similarity=0.265 Sum_probs=73.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
|.|+|+|.+|+|||||+|+|++..+.......+|... .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~---~--------------------------------------- 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI---G--------------------------------------- 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEee---c---------------------------------------
Confidence 7899999999999999999998875322111122110 0
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
...+....+....++++||||... ...+...++..+|++++++.....+ ......
T Consensus 39 ----------~~~~~~~~~~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~il~v~d~~~~~--~~~~~~ 93 (168)
T cd01887 39 ----------AFEVPAEVLKIPGITFIDTPGHEA-------------FTNMRARGASLTDIAILVVAADDGV--MPQTIE 93 (168)
T ss_pred ----------cEEEecccCCcceEEEEeCCCcHH-------------HHHHHHHHHhhcCEEEEEEECCCCc--cHHHHH
Confidence 000111112356899999999532 2345566778899987766554322 222333
Q ss_pred HHHHhCCCCCceEEEeccCCCCCC
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
....+...+.+.++|+||+|+.+.
T Consensus 94 ~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 94 AIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHcCCCEEEEEEceecccc
Confidence 333344457899999999998753
No 35
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.40 E-value=2.2e-12 Score=121.60 Aligned_cols=125 Identities=22% Similarity=0.296 Sum_probs=71.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
.|++||.+|||||||+|+|+|.+..+......|+-|..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~------------------------------------------ 39 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL------------------------------------------ 39 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc------------------------------------------
Confidence 58999999999999999999876421111122222200
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhcc--hHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~~--~~~ 196 (620)
| . +.......+.|+||||+....... ..+.....+.+..+|+++++++..+. +... ..+
T Consensus 40 ~----------~--~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 40 G----------V--VRVDDGRSFVVADIPGLIEGASEG------KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred e----------E--EEcCCCCeEEEEecCcccCccccc------CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHH
Confidence 0 0 111222478999999986532111 01122233445679988887765443 1111 122
Q ss_pred HHHHHHhCC--CCCceEEEeccCCCCCCCC
Q 007054 197 MKLAREVDP--TGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 197 l~l~~~~~~--~~~rti~VltK~D~~~~~~ 224 (620)
.+......+ .+.+.++|+||+|+.++..
T Consensus 102 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 102 RNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred HHHHHHhCccccccccEEEEEchhcCCchh
Confidence 223333332 3688999999999976543
No 36
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=3.3e-12 Score=136.35 Aligned_cols=122 Identities=23% Similarity=0.260 Sum_probs=76.2
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
++.|++||.+|||||||||+|++.+.-......+|..|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~-------------------------------------- 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV-------------------------------------- 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE--------------------------------------
Confidence 459999999999999999999997631123345555551111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc---hhcch
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIATS 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~---d~~~~ 194 (620)
+..++...++|+||||+...+..+ ..+.....+++++++++|++++.++. +. ..
T Consensus 200 ----------------v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp-~e 256 (424)
T PRK12297 200 ----------------VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDP-IE 256 (424)
T ss_pred ----------------EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCCh-HH
Confidence 111224578999999998643321 12233345567779999887765532 21 11
Q ss_pred H---HHHHHHHhCC--CCCceEEEeccCCCC
Q 007054 195 D---AMKLAREVDP--TGERTFGVLTKLDLM 220 (620)
Q Consensus 195 ~---~l~l~~~~~~--~~~rti~VltK~D~~ 220 (620)
+ +...+...++ .+.+.++|+||+|+.
T Consensus 257 ~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 257 DYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 2 2222333333 368999999999974
No 37
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.39 E-value=3.2e-12 Score=120.26 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999864
No 38
>COG2262 HflX GTPases [General function prediction only]
Probab=99.39 E-value=5.5e-12 Score=129.64 Aligned_cols=184 Identities=19% Similarity=0.243 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcc
Q 007054 10 LVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE 89 (620)
Q Consensus 10 ~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~ 89 (620)
-+++|+.-+..+..... ..+-.......|+|++||.+|||||||+|+|+|...+-.+.-+.|=-||.=
T Consensus 165 rI~~i~~eLe~v~~~R~-~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR----------- 232 (411)
T COG2262 165 RIAKLKRELENVEKARE-PRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR----------- 232 (411)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCcee-----------
Confidence 34555555555543321 111222335899999999999999999999999987444555555444211
Q ss_pred eeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH
Q 007054 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM 169 (620)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~ 169 (620)
.+.-+++..+.|-||-|+++ +-|+++.+.++..
T Consensus 233 -------------------------------------------~~~l~~g~~vlLtDTVGFI~----~LP~~LV~AFksT 265 (411)
T COG2262 233 -------------------------------------------RIELGDGRKVLLTDTVGFIR----DLPHPLVEAFKST 265 (411)
T ss_pred -------------------------------------------EEEeCCCceEEEecCccCcc----cCChHHHHHHHHH
Confidence 13444467899999999998 5566777777664
Q ss_pred HHHhhcCCCeEEEEeccCCchhcch--HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeC
Q 007054 170 VRSYVEKPNSVILAISPANQDIATS--DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNR 247 (620)
Q Consensus 170 ~~~yi~~~~~iil~V~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~ 247 (620)
. +-+..+|.++++|+.++.++..+ ....+..++.-...|+|.|+||+|++..... ...+.... . ..+.|++.
T Consensus 266 L-EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~-~~~~~~~~---~-~~v~iSA~ 339 (411)
T COG2262 266 L-EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI-LAELERGS---P-NPVFISAK 339 (411)
T ss_pred H-HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh-hhhhhhcC---C-CeEEEEec
Confidence 4 44678999988877766544332 2356778887778999999999999876541 11111111 1 24566666
Q ss_pred ChhhhhccCCH
Q 007054 248 SQADINRNIDM 258 (620)
Q Consensus 248 s~~~~~~~~~~ 258 (620)
++.+++.+...
T Consensus 340 ~~~gl~~L~~~ 350 (411)
T COG2262 340 TGEGLDLLRER 350 (411)
T ss_pred cCcCHHHHHHH
Confidence 66555444443
No 39
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=3.7e-12 Score=138.76 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccC-cccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..++|+|+|.+|+|||||+|+|+|.+..+.+. ..+|+-+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~---------------------------------------- 210 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS---------------------------------------- 210 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc----------------------------------------
Confidence 45689999999999999999999986432211 1122111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
+...+.. +...+++|||||+.+.... .+.+.......+..+++.+|++|++++ +..+. +..
T Consensus 211 --------------~~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV~D-~~~~~-~~~ 271 (429)
T TIGR03594 211 --------------IDIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLVLD-ATEGI-TEQ 271 (429)
T ss_pred --------------EeEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEEEE-CCCCc-cHH
Confidence 1111111 2347899999999764321 111222222334568899999977665 44444 334
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
..++++.+...+.+.|+|+||+|+.+
T Consensus 272 ~~~~~~~~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 272 DLRIAGLILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred HHHHHHHHHHcCCcEEEEEECcccCC
Confidence 45677777667899999999999983
No 40
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=2.2e-12 Score=139.42 Aligned_cols=125 Identities=25% Similarity=0.284 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
-+..|++||.+|||||||||+|++.+.-..+...+|+.|..-.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------------------------- 200 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------------------------- 200 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------------------------
Confidence 4579999999999999999999998643333345565552111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc----h-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ----D-I 191 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~----d-~ 191 (620)
+.. ....++|+||||+...+..+ ..+.....+++.++++||++|+.++. + +
T Consensus 201 -----------------v~~-~~~~f~laDtPGliegas~g------~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~ 256 (500)
T PRK12296 201 -----------------VQA-GDTRFTVADVPGLIPGASEG------KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPL 256 (500)
T ss_pred -----------------EEE-CCeEEEEEECCCCccccchh------hHHHHHHHHHHHhcCEEEEEECCcccccccCch
Confidence 111 12468999999998643221 22223345678889998877765431 1 1
Q ss_pred cchHH-H-HHHHHh----------CCCCCceEEEeccCCCCCC
Q 007054 192 ATSDA-M-KLAREV----------DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 192 ~~~~~-l-~l~~~~----------~~~~~rti~VltK~D~~~~ 222 (620)
..-+. . ++.... ...+.+.|+|+||+|+.+.
T Consensus 257 ~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 257 SDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred hhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 11111 1 122111 1246899999999998743
No 41
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.39 E-value=2.6e-12 Score=133.69 Aligned_cols=126 Identities=22% Similarity=0.287 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
-++.|++||.+|||||||||+|++..........+|..|+.-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 4578999999999999999999987643333345666662221
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
+...+...++|+||||+......+ ..+.....+++++++.++++++.++.+. ...
T Consensus 199 -----------------v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 199 -----------------VRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIE 255 (329)
T ss_pred -----------------EEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHH
Confidence 111223578999999998643221 1233445566788998888776544311 011
Q ss_pred H---HHHHHHHhCC--CCCceEEEeccCCCCCC
Q 007054 195 D---AMKLAREVDP--TGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~---~l~l~~~~~~--~~~rti~VltK~D~~~~ 222 (620)
+ +.+....+.+ ...+.++|+||+|+.+.
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 1 1222223332 36899999999999764
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=2.8e-12 Score=140.72 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcc-cCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPR-GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~-~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..++|+++|.+|+|||||+|+|+|..+... ....+|+-+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~---------------------------------------- 249 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDP---------------------------------------- 249 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCc----------------------------------------
Confidence 468999999999999999999999875211 111222111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH-HHHhhcCCCeEEEEeccCCchhcch
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~-~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
+...+.. +...+.||||||+.+.... ....+....+ ...+++.+|++|++++. .... +.
T Consensus 250 --------------~~~~~~~-~~~~~~l~DTaG~~~~~~~---~~~~e~~~~~~~~~~i~~ad~vilV~Da-~~~~-s~ 309 (472)
T PRK03003 250 --------------VDSLIEL-GGKTWRFVDTAGLRRRVKQ---ASGHEYYASLRTHAAIEAAEVAVVLIDA-SEPI-SE 309 (472)
T ss_pred --------------ceEEEEE-CCEEEEEEECCCccccccc---cchHHHHHHHHHHHHHhcCCEEEEEEeC-CCCC-CH
Confidence 1111111 2345789999998653221 1112333332 34578999999886654 4444 33
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+.++..+...+.++|+|+||+|+.+.
T Consensus 310 ~~~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 310 QDQRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4445666666678999999999999853
No 43
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=5.5e-12 Score=138.45 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|.|+|||.+|+|||||+|+|+|..+. .+...|
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-----~v~~~~----------------------------------------- 70 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-----VVEDVP----------------------------------------- 70 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-----cccCCC-----------------------------------------
Confidence 5799999999999999999999997641 111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+++.+.+...+. .....+.||||||+.... ......+...+..|++.+|++|++++..+ .. +...
T Consensus 71 -------gvT~d~~~~~~~-~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~il~VvD~~~-~~-s~~~ 135 (472)
T PRK03003 71 -------GVTRDRVSYDAE-WNGRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTADAVLFVVDATV-GA-TATD 135 (472)
T ss_pred -------CCCEeeEEEEEE-ECCcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHH
Confidence 111111221121 123468999999986321 12556677788889999999987765543 33 2223
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCC-eeEEeeCChhhhhccCCHH
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~v~~~s~~~~~~~~~~~ 259 (620)
..++..+...+.++|+|+||+|+.....+..+. ..++++ .+.+++..+.++++++...
T Consensus 136 ~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i 194 (472)
T PRK03003 136 EAVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAV 194 (472)
T ss_pred HHHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHH
Confidence 345566656789999999999986433222221 122222 2467777666666555443
No 44
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.37 E-value=5.5e-12 Score=118.70 Aligned_cols=128 Identities=23% Similarity=0.295 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.++|+++|.+|+|||||+|+|+|....+.+....|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRD------------------------------------------ 39 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccC------------------------------------------
Confidence 46899999999999999999999864332221111000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
.. ...+. ....++++|||||+...... ..............++..+|.++++++ ++... +....
T Consensus 40 -------~~--~~~~~---~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~d-~~~~~-~~~~~ 103 (174)
T cd01895 40 -------SI--DVPFE---YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVID-ATEGI-TEQDL 103 (174)
T ss_pred -------ce--eeEEE---ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEEe-CCCCc-chhHH
Confidence 00 00011 12346899999998764211 111112111223456778998877664 44443 33344
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.+.+.+...+.+.++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCcc
Confidence 55566555678999999999998653
No 45
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=4.8e-12 Score=137.89 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=97.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcc-cCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPR-GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~-~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.|++||.+|+|||||+|+|+|.....+ ....+|+-+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~------------------------------------------- 37 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDR------------------------------------------- 37 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCc-------------------------------------------
Confidence 489999999999999999999864111 111222221
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
....+.. ....+.||||||+... ...+.+.+.+.+..+++.+|.++++++ +...+ +.....
T Consensus 38 -----------~~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~vvD-~~~~~-~~~d~~ 98 (429)
T TIGR03594 38 -----------KYGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFVVD-GREGL-TPEDEE 98 (429)
T ss_pred -----------eEEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEEEe-CCCCC-CHHHHH
Confidence 1111111 2346899999998642 223567788889999999998877654 44444 333445
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCC-CeeEEeeCChhhhhccCCH
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDM 258 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l-g~~~v~~~s~~~~~~~~~~ 258 (620)
+++.+...+.++++|+||+|.........+ ...++. .++.+++..+.++++..+.
T Consensus 99 i~~~l~~~~~piilVvNK~D~~~~~~~~~~-----~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 99 IAKWLRKSGKPVILVANKIDGKKEDAVAAE-----FYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred HHHHHHHhCCCEEEEEECccCCcccccHHH-----HHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 666666678999999999999865443322 223343 3566776666665544443
No 46
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=5.9e-12 Score=137.39 Aligned_cols=127 Identities=22% Similarity=0.288 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..++|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~------------------------------------------ 209 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTR------------------------------------------ 209 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceE------------------------------------------
Confidence 467999999999999999999999864332221 1111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
+.+...+. .+...+.+|||||+.+..... +........-+.++++.+|++|++++ +..+.. ..
T Consensus 210 ------------~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilViD-~~~~~~-~~ 272 (435)
T PRK00093 210 ------------DSIDTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLLVID-ATEGIT-EQ 272 (435)
T ss_pred ------------EEEEEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEEEEe-CCCCCC-HH
Confidence 11111111 234678999999987633211 11111122234568899999877655 555553 33
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
...+++.+...+.++|+|+||+|+.+.
T Consensus 273 ~~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 273 DLRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHHHHcCCcEEEEEECccCCCH
Confidence 456777777778999999999999843
No 47
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=9e-12 Score=120.21 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||||- +....+...|++.+|++|++++..+.+ +. ...++..+....+.+.|+++|+||+
T Consensus 50 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 50 VKLQIWDTAGQ-------------ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEEeCCCc-------------HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 46789999993 233455677899999998877554421 10 1223445555566678999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHHHHHHHH
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKERE 267 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~~~~e~~ 267 (620)
|+..+.....+.........+.+|+.+.+.++.++++.+..+.....+..
T Consensus 117 Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 117 DMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred cchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99743221111111112234467899999888888877776665555543
No 48
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.35 E-value=1.8e-11 Score=140.28 Aligned_cols=159 Identities=20% Similarity=0.295 Sum_probs=97.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+++|++|+|||||+|+|+|.+. .++ +.|
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vg-----n~p------------------------------------------- 34 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVG-----NWA------------------------------------------- 34 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccC-----CCC-------------------------------------------
Confidence 5899999999999999999999864 111 111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~~ 196 (620)
| .+-+...-.+ ..+...+.+|||||+.+......+.... +.+...|+. .+|++|+++++.+ ....
T Consensus 35 -G----vTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD~vI~VvDat~----ler~ 101 (772)
T PRK09554 35 -G----VTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASN----LERN 101 (772)
T ss_pred -C----ceEeeEEEEE-EcCceEEEEEECCCccccccccccccHH---HHHHHHHHhccCCCEEEEEecCCc----chhh
Confidence 0 0001111111 2234578999999998754321111122 334555654 7898877665443 2234
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
+.+..++...+.|+++|+||+|..++.....+ .+.....++.+++++..+.++++++......
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id-~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRID-IDALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHH-HHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 55666666678999999999998754332222 1222234567788888888877766555443
No 49
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.34 E-value=1.3e-11 Score=115.74 Aligned_cols=154 Identities=12% Similarity=0.145 Sum_probs=91.2
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|.+|+|||||++++++.++-+.....++...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 40 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEF------------------------------------------ 40 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEE------------------------------------------
Confidence 45899999999999999999999876322211111000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~ 195 (620)
. ...+.+.+ ....+.++||||.. ....+...|++.++++|++++..+..-. ...
T Consensus 41 --------~--~~~~~~~~-~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (165)
T cd01868 41 --------A--TRSIQIDG-KTIKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITKKQTFENVER 96 (165)
T ss_pred --------E--EEEEEECC-EEEEEEEEeCCChH-------------HHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence 0 00111111 12368899999953 3455667888999988887765432210 112
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
++..++...+.+.++++|.||+|+........+.........+.+|+.+++.++.+++..+.
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 158 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFK 158 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 34444455555689999999999875432111111111122356788888887766654433
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=1.1e-11 Score=135.24 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=95.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCccc-CcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.|.|++||.+|+|||||+|+|+|......+ ...+|+-.
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~----------------------------------------- 39 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR----------------------------------------- 39 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc-----------------------------------------
Confidence 379999999999999999999998641111 11111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
..-.+.. ....+.||||||+.... ++....+...+..++..+|++|++|+.. ... +...
T Consensus 40 -------------~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvd~~-~~~-~~~~ 98 (435)
T PRK00093 40 -------------IYGEAEW-LGREFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADVILFVVDGR-AGL-TPAD 98 (435)
T ss_pred -------------eEEEEEE-CCcEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECC-CCC-CHHH
Confidence 1111111 23678999999997521 1255667777888999999987766543 333 2223
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCC-eeEEeeCChhhhhccCCH
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDM 258 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~v~~~s~~~~~~~~~~ 258 (620)
..++..+...+.++|+|+||+|..+......+. ..++.+ ++.+++..+.++++.+..
T Consensus 99 ~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 99 EEIAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred HHHHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHH
Confidence 334555555589999999999976533222222 233443 567777776666554443
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.33 E-value=1.7e-11 Score=115.53 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
-+.+|+|||.+|+|||||++++++..+-+......+...
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~----------------------------------------- 41 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----------------------------------------- 41 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE-----------------------------------------
Confidence 346999999999999999999999875332221111100
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
....+.+.+ ....+.|+||||. +....+...|++.+|+++++++..+ .-.-++.
T Consensus 42 -----------~~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~v~d~~~-~~s~~~~ 95 (168)
T cd01866 42 -----------GARMITIDG-KQIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITR-RETFNHL 95 (168)
T ss_pred -----------EEEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEECCC-HHHHHHH
Confidence 001111111 1236889999993 2346667889999999988665443 2212222
Q ss_pred HHHHHHh---CCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 197 MKLAREV---DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 197 l~l~~~~---~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
..+...+ ...+.+.++|.||+|+.++.....+.........+..|+.+...+..++++.+.
T Consensus 96 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 96 TSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred HHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 2333222 234678999999999975432111111111223355677777777766655443
No 52
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.33 E-value=1.4e-11 Score=114.97 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=84.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|++|+|||||+|+++|.++.+......|.-+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeE--------------------------------------------
Confidence 689999999999999999999886332211111111
Q ss_pred CCCCCccCccEEEEEecCC-CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHH
Q 007054 120 GKTKQISPIPIHLSIYSPN-VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~-~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~ 196 (620)
..-.+..++ ...+.++||||- .....++..+++.++++|++++..+.. +.. ..+
T Consensus 38 ----------~~~~~~~~~~~~~l~~~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 94 (161)
T cd01861 38 ----------LSKTMYLEDKTVRLQLWDTAGQ-------------ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKW 94 (161)
T ss_pred ----------EEEEEEECCEEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 000111111 135889999993 233567788999999988776544321 211 122
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+.......+.+.++++|+||+|+........+.........+..++.+++....++++
T Consensus 95 ~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 95 IDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred HHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 2222222333589999999999964432222211111222335566666665555443
No 53
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.32 E-value=1.9e-11 Score=122.17 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...+|+|+|.+|+|||||+|+|+|....+++.. .+|..+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 567999999999999999999999876554322 2332221111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCc-hhc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQ-DIA 192 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~-d~~ 192 (620)
...+...+++|||||+......+ ...+.+.+.+..|+. ..++| |+|...+. .+.
T Consensus 74 -------------------~~~~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~idvI-L~V~rlD~~r~~ 130 (249)
T cd01853 74 -------------------GTVDGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPDVV-LYVDRLDMYRRD 130 (249)
T ss_pred -------------------EEECCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCCEE-EEEEcCCCCCCC
Confidence 01234578999999998753211 133445566777886 45655 44543322 221
Q ss_pred ch--HHHHHHHHhCCC--CCceEEEeccCCCCCCCC
Q 007054 193 TS--DAMKLAREVDPT--GERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 193 ~~--~~l~l~~~~~~~--~~rti~VltK~D~~~~~~ 224 (620)
.. ..++..+..-.. -.++|+|+||+|...+..
T Consensus 131 ~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 131 YLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 22 233333332111 258999999999986654
No 54
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.32 E-value=2e-11 Score=114.91 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=89.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+++|++|+|||||++++++.+|-+ ....++..+.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~----------------------------------------- 40 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDF----------------------------------------- 40 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceE-----------------------------------------
Confidence 4699999999999999999999987622 1111110000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~ 195 (620)
....+.+. .....+.++||||.. ....+...+++++|++|++++..+.+- ....
T Consensus 41 ----------~~~~~~~~-~~~~~l~l~D~~g~~-------------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~ 96 (167)
T cd01867 41 ----------KIRTIELD-GKKIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIILVYDITDEKSFENIRN 96 (167)
T ss_pred ----------EEEEEEEC-CEEEEEEEEeCCchH-------------HHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHH
Confidence 00011111 122468899999942 234556778899999988765433211 0122
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
++.......+.+.++++|.||+|+.+......+.........+.+|+.+++..+.++++.+.
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFF 158 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 33333444455789999999999985432211112212223445678888777666555443
No 55
>PRK04213 GTP-binding protein; Provisional
Probab=99.32 E-value=1.4e-11 Score=119.87 Aligned_cols=123 Identities=23% Similarity=0.384 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..++|+++|.+|+|||||+|+|+|..+ +.+.. .+|+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~----------------------------------------- 45 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRK----------------------------------------- 45 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeC-----------------------------------------
Confidence 568999999999999999999999864 32211 11111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-C---CCeEEEEeccCCchh
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-K---PNSVILAISPANQDI 191 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~-~---~~~iil~V~~a~~d~ 191 (620)
...+.. .+++++||||+..... -++...+.++.+...|+. . .+.+++++. +....
T Consensus 46 -------------~~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d-~~~~~ 104 (201)
T PRK04213 46 -------------PNHYDW-----GDFILTDLPGFGFMSG--VPKEVQEKIKDEIVRYIEDNADRILAAVLVVD-GKSFI 104 (201)
T ss_pred -------------ceEEee-----cceEEEeCCccccccc--cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEe-Ccccc
Confidence 111111 1689999999754321 122234566677767765 2 355555554 43211
Q ss_pred c----------chHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 192 A----------TSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 192 ~----------~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
. .+....+...+...+.+.++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 105 EIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred ccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 0 111223344444457899999999998754
No 56
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.32 E-value=2.9e-11 Score=111.91 Aligned_cols=121 Identities=26% Similarity=0.322 Sum_probs=73.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|++|+|||||+|+|+|......+....|.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~---------------------------------------------- 36 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTT---------------------------------------------- 36 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCc----------------------------------------------
Confidence 7999999999999999999998642211111110
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l 199 (620)
.+.....+ ......++++||||+...... .....-..+..++..+|+++++++.. ... .....++
T Consensus 37 -------~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~-~~~-~~~~~~~ 101 (157)
T cd04164 37 -------RDVIEESI-DIGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVIDAS-RGL-DEEDLEI 101 (157)
T ss_pred -------cceEEEEE-EeCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEEECC-CCC-CHHHHHH
Confidence 00111111 122457899999998753221 22222234556678899887765544 322 3333334
Q ss_pred HHHhCCCCCceEEEeccCCCCCCC
Q 007054 200 AREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 200 ~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
... ..+.++++|+||+|+.+..
T Consensus 102 ~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 102 LEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHh--hcCCCEEEEEEchhcCCcc
Confidence 433 3468999999999998654
No 57
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.31 E-value=2.6e-11 Score=111.73 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=51.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...++++||||+...... ..........++..+|.+++++....... .... .+.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~------~~~~~~~~~~~~~~~d~il~v~~~~~~~~-~~~~-~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL------GREREELARRVLERADLILFVVDADLRAD-EEEE-KLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccc------hhhHHHHHHHHHHhCCEEEEEEeCCCCCC-HHHH-HHHHHHHhcCCeEEEEEEccc
Confidence 578999999998874432 11123566678889999877665554322 2222 234444445789999999999
Q ss_pred CCCCCC
Q 007054 219 LMDKGT 224 (620)
Q Consensus 219 ~~~~~~ 224 (620)
+.....
T Consensus 116 ~~~~~~ 121 (163)
T cd00880 116 LLPEEE 121 (163)
T ss_pred cCChhh
Confidence 987543
No 58
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=9.3e-11 Score=122.40 Aligned_cols=128 Identities=26% Similarity=0.343 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-++|+++|.||+|||||||+|+..+. .+++..|
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~----------------------------------------- 300 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP----------------------------------------- 300 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC-----------------------------------------
Confidence 558999999999999999999999987 6777665
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
|+ +.|.|...+. +++..+.|+||.|+...... .++..--+-.++-++.+|.|+++|.+...++ +..
T Consensus 301 ---GT----TRDaiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA~k~~~~advi~~vvda~~~~t--~sd 366 (531)
T KOG1191|consen 301 ---GT----TRDAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERARKRIERADVILLVVDAEESDT--ESD 366 (531)
T ss_pred ---Cc----chhhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHHHHHHhhcCEEEEEeccccccc--ccc
Confidence 32 2345555444 67889999999999882211 1333334557778899998877665533232 222
Q ss_pred HHHHHHhCC------------CCCceEEEeccCCCCCCCC
Q 007054 197 MKLAREVDP------------TGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 197 l~l~~~~~~------------~~~rti~VltK~D~~~~~~ 224 (620)
+.+++.+.. ...|.|.|.||.|+..+..
T Consensus 367 ~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 367 LKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred hHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 333332221 1378899999999987744
No 59
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.30 E-value=2.5e-11 Score=114.10 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=62.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||.. ....+...|++.+++++++++..+..- ...+++...+...+...+.++|.||+
T Consensus 50 ~~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEEECCChH-------------HHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 467899999943 235566788999999988766543211 11233444444444567899999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
|+.+......+........++.+|+.+.+.++.++++.+.
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 117 DMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred ccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9976442111111111122345577777766666554443
No 60
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.30 E-value=1.2e-11 Score=114.74 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=57.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
.++.++||||....... + .-..+...|+. .+|++|++++.... .....+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~--~-----~~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY--S-----EDEKVARDFLLGEKPDLIVNVVDATNL----ERNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCC--C-----hhHHHHHHHhcCCCCcEEEEEeeCCcc----hhHHHHHHHHHHcCCCEEEEEehh
Confidence 57899999998653321 1 11234555664 89988876654332 112234444444578999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
|+.+....... ...-...++..++.+....+.++..
T Consensus 112 Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 112 DEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred hhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHH
Confidence 99764321111 1111112334566666666555443
No 61
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=2.2e-11 Score=139.96 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcC-cccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~l-P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..|+|+++|.+|+|||||+|+|+|.++. +.....+|+-+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~---------------------------------------- 488 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDP---------------------------------------- 488 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCc----------------------------------------
Confidence 4689999999999999999999998752 22222222211
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHH-HHHHhhcCCCeEEEEeccCCchhcch
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIES-MVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~-~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
+...+ ..+...+.||||||+.+.... ....+.... ....+++.+|+++++++ ++.... .
T Consensus 489 --------------~~~~~-~~~~~~~~liDTaG~~~~~~~---~~~~e~~~~~r~~~~i~~advvilViD-at~~~s-~ 548 (712)
T PRK09518 489 --------------VDEIV-EIDGEDWLFIDTAGIKRRQHK---LTGAEYYSSLRTQAAIERSELALFLFD-ASQPIS-E 548 (712)
T ss_pred --------------ceeEE-EECCCEEEEEECCCcccCccc---chhHHHHHHHHHHHHhhcCCEEEEEEE-CCCCCC-H
Confidence 11011 112456889999998753221 111122222 24567889999977654 544443 3
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+.++..+...+.++|+|+||+|+.+.
T Consensus 549 ~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 549 QDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 3345666666678999999999999864
No 62
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.30 E-value=7.8e-12 Score=115.80 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=51.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
..+.++||||+..... .....+...+..++..+|.+++++.+.. .... ....+.+.+...+.++++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~-~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVDGRE-GLTP-ADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEeccc-cCCc-cHHHHHHHHHhcCCCEEEEEECccc
Confidence 5789999999976322 2334455566678889998877665433 2212 2223444454557999999999999
Q ss_pred CCCC
Q 007054 220 MDKG 223 (620)
Q Consensus 220 ~~~~ 223 (620)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 8653
No 63
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.30 E-value=2.6e-11 Score=117.64 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=89.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++|+|||||++.+++.+| +....+.+......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~----------------------------------------- 39 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYR----------------------------------------- 39 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccce-----------------------------------------
Confidence 699999999999999999999875 33222222111000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH---
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~--- 196 (620)
..+.+ +.....+.|+||||....+.. ...........+++.+|++|++++..+.+ +-...
T Consensus 40 ----------~~i~~-~~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~~-S~~~~~~~ 102 (198)
T cd04142 40 ----------PAVVL-SGRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSPD-SFHYVKLL 102 (198)
T ss_pred ----------eEEEE-CCEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCHH-HHHHHHHH
Confidence 00111 111246789999998643211 11222334556788999998877654421 11111
Q ss_pred HHHHHHh---CCCCCceEEEeccCCCCCCCCcHHHHHhCC-ccccCCCeeEEeeCChhhhhccCC
Q 007054 197 MKLAREV---DPTGERTFGVLTKLDLMDKGTNALDVLEGR-SYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 197 l~l~~~~---~~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
.+..... .+.+.|+++|.||+|+........+.+... ....+.+|+.+++.++.+++..+.
T Consensus 103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHH
Confidence 1122222 245689999999999965432111111111 112356788888887776655443
No 64
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.8e-10 Score=122.79 Aligned_cols=184 Identities=19% Similarity=0.293 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcce
Q 007054 11 VNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEY 90 (620)
Q Consensus 11 ~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~ 90 (620)
.++|..+...+.+... .|++.|+.|+||||++||++..++||.|.+.||.|-+++. .. .+...+
T Consensus 95 ~~~l~~i~~~l~r~~m-------------KV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--ga-dG~e~v 158 (749)
T KOG0448|consen 95 EDKLDAIDEVLARRHM-------------KVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GA-DGAEAV 158 (749)
T ss_pred HHHHHHHHHHHhhccc-------------EEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--cc-CCccee
Confidence 4566666666665544 9999999999999999999999999999999999997776 22 222222
Q ss_pred eeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCC------CCcEEEeCCCCCccccCCCCccHHH
Q 007054 91 AEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNV------VNLTLIDLPGLTKVAVEGQPDTIVE 164 (620)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~------~~l~lVDlPGl~~~~~~~q~~~~~~ 164 (620)
....+ ...-.|...+...+.. +.... . ....--+.|+.|+. .++.+||.||+.-.+
T Consensus 159 l~~~~--s~ek~d~~ti~~~~ha----L~~~~-~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s---------- 220 (749)
T KOG0448|consen 159 LATEG--SEEKIDMKTINQLAHA----LKPDK-D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS---------- 220 (749)
T ss_pred eccCC--CcccccHHHHhHHHHh----cCccc-c-cCcceEEEEEecCccchhhhccceeccCCCCCCch----------
Confidence 22111 1222233322211111 11100 0 11223355666665 489999999998643
Q ss_pred HHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHH
Q 007054 165 DIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVL 230 (620)
Q Consensus 165 ~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l 230 (620)
.....+.++..++|++||++. |...+ +..+.++...+......++++.||||....+.++.+.+
T Consensus 221 e~tswid~~cldaDVfVlV~N-aEntl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 221 ELTSWIDSFCLDADVFVLVVN-AENTL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred hhhHHHHHHhhcCCeEEEEec-CccHh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHH
Confidence 335667888889999988665 44445 56666788888776677788889999987776654433
No 65
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.28 E-value=5.8e-11 Score=120.31 Aligned_cols=142 Identities=16% Similarity=0.243 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccC-cccccccEEEEEEecCCCCcc
Q 007054 11 VNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQE 89 (620)
Q Consensus 11 ~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~ 89 (620)
..+|.+++..+.+.. ...++|+|+|.+|+||||++|+|+|.+....+. ..+|..|+...
T Consensus 21 q~~l~~~l~~l~~~~----------~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~---------- 80 (313)
T TIGR00991 21 QTKLLELLGKLKEED----------VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS---------- 80 (313)
T ss_pred HHHHHHHHHhccccc----------ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE----------
Confidence 466777776666554 367899999999999999999999987532211 11222221110
Q ss_pred eeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH
Q 007054 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM 169 (620)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~ 169 (620)
....+..+++|||||+.+.. ...+...+.
T Consensus 81 ---------------------------------------------~~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ 109 (313)
T TIGR00991 81 ---------------------------------------------RTRAGFTLNIIDTPGLIEGG------YINDQAVNI 109 (313)
T ss_pred ---------------------------------------------EEECCeEEEEEECCCCCchH------HHHHHHHHH
Confidence 11134678999999998742 233445566
Q ss_pred HHHhhc--CCCeEEEEec-cC-CchhcchHHHHHHHHhC--CCCCceEEEeccCCCCCCC
Q 007054 170 VRSYVE--KPNSVILAIS-PA-NQDIATSDAMKLAREVD--PTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 170 ~~~yi~--~~~~iil~V~-~a-~~d~~~~~~l~l~~~~~--~~~~rti~VltK~D~~~~~ 223 (620)
++.|+. .+|+++++.. +. ..+-.....++..+.+- ..-.++|+|+|+.|..+++
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 666664 4787766531 22 12211233444444432 1236899999999988643
No 66
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.28 E-value=3.5e-11 Score=116.68 Aligned_cols=121 Identities=26% Similarity=0.302 Sum_probs=71.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|+|..+ |......+... .+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~~~------~~----------------------------------- 39 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTGVV------ET----------------------------------- 39 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccCcc------cc-----------------------------------
Confidence 4799999999999999999999764 22111111100 00
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
+... ..+..+..++++++||||+...... ..+.++. ..+.+.|.++++ .+ .++ ++....
T Consensus 40 -------t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~---~~~~~~d~~l~v-~~--~~~-~~~d~~ 98 (197)
T cd04104 40 -------TMKR--TPYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEE---MKFSEYDFFIII-SS--TRF-SSNDVK 98 (197)
T ss_pred -------ccCc--eeeecCCCCCceEEeCCCCCcccCC-----HHHHHHH---hCccCcCEEEEE-eC--CCC-CHHHHH
Confidence 0000 0122233568999999999753211 1122211 124567877664 33 234 333444
Q ss_pred HHHHhCCCCCceEEEeccCCCCCC
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+.+.+...+.++++|+||+|+..+
T Consensus 99 ~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 99 LAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHHhCCCEEEEEecccchhh
Confidence 555665568899999999999643
No 67
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.28 E-value=4.4e-11 Score=112.43 Aligned_cols=152 Identities=13% Similarity=0.182 Sum_probs=89.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-+|+++|++++|||||++++++..+.+.. ..++...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~------------------------------------------- 38 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVE------------------------------------------- 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-Cccccee-------------------------------------------
Confidence 37999999999999999999988762211 1111000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~ 196 (620)
+. ...+.+.+ ....+.|+||||. +....+...|+++++++|++++..+..- ....+
T Consensus 39 ------~~--~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 96 (166)
T cd04122 39 ------FG--TRIIEVNG-QKIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 96 (166)
T ss_pred ------EE--EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 00111111 1236789999994 2345667889999999988876654221 01223
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
+...+.....+.++++|.||+|+........+.........+..|+.+++.++.++.+.+
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 333444444467899999999997543211111111112234567778877776665443
No 68
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.28 E-value=1e-11 Score=121.76 Aligned_cols=148 Identities=22% Similarity=0.299 Sum_probs=82.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccC--cccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~--~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
+|+|+|..||||||++|+|+|.+.++.+. ..||..+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-------------------------------------- 43 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-------------------------------------- 43 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee--------------------------------------
Confidence 79999999999999999999999887763 24554331111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~ 195 (620)
....+..+++|||||+.+.... ++.+...+.+.+......+++++|+ .+.. .+. ...
T Consensus 44 -----------------~~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llV-i~~~-r~t~~~~~ 102 (212)
T PF04548_consen 44 -----------------GEVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLV-IPLG-RFTEEDRE 102 (212)
T ss_dssp -----------------EEETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEE-EETT-B-SHHHHH
T ss_pred -----------------eeecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEE-EecC-cchHHHHH
Confidence 1122467899999999775432 2223333333333344568888765 4444 443 233
Q ss_pred HHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHh--------CCccccCCCeeEEeeC
Q 007054 196 AMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLE--------GRSYRLQHPWVGIVNR 247 (620)
Q Consensus 196 ~l~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~--------~~~~~l~lg~~~v~~~ 247 (620)
.++....+-+ .-+.+|+|+|..|...+.. ..+++. ......+-.|+.+.+.
T Consensus 103 ~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 103 VLELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HHHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 4444444322 2368999999999887654 333333 1123344456655555
No 69
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.28 E-value=1.1e-11 Score=117.30 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-----hcchH---HHHHHHHhCC-----
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-----IATSD---AMKLAREVDP----- 205 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-----~~~~~---~l~l~~~~~~----- 205 (620)
...+.++||||+....... +.. ......+++.+|+++++++..+.+ ....+ ..........
T Consensus 43 ~~~~~i~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG--RGL----GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC--CCc----cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678999999986532211 111 112345678899888877654431 11111 1112222221
Q ss_pred --CCCceEEEeccCCCCCCCC
Q 007054 206 --TGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 206 --~~~rti~VltK~D~~~~~~ 224 (620)
.+.|+++|+||+|+.....
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred HHhhCCeEEEEEchhcCchhH
Confidence 3689999999999986543
No 70
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.28 E-value=5.2e-11 Score=111.87 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||.. ....+...|++.+|++|++++..+.+- ....++...+.....+.+.++|.||+
T Consensus 51 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 51 IKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEEECCCcH-------------hHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 357899999942 235566788999999988876554221 01123333334443467999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
|+........+.........+.+|+.+++..+.++++.+.
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 157 (166)
T cd01869 118 DLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFM 157 (166)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHH
Confidence 9865432111111111223345678888877766655443
No 71
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=4e-11 Score=137.86 Aligned_cols=159 Identities=18% Similarity=0.262 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..+|.|+++|.+|+|||||+|+|+|... .++...|
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~p---------------------------------------- 307 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTP---------------------------------------- 307 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCC----------------------------------------
Confidence 3568999999999999999999999764 2222222
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
+++.+.+.... ..+...+.+|||||+... .+++...+.+.+..|++.+|++|++++ +...+. ..
T Consensus 308 --------GvT~d~~~~~~-~~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~iL~VvD-a~~~~~-~~ 371 (712)
T PRK09518 308 --------GVTRDRVSYDA-EWAGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADAVVFVVD-GQVGLT-ST 371 (712)
T ss_pred --------CeeEEEEEEEE-EECCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCEEEEEEE-CCCCCC-HH
Confidence 11111111111 122357899999998642 123666777888889999999977665 444442 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCC-eeEEeeCChhhhhccCCHHH
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~v~~~s~~~~~~~~~~~~ 260 (620)
...++..+...+.++|+|+||+|+........+. ..++++ .+.+++..+.++.+.+....
T Consensus 372 d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 372 DERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEF-----WKLGLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred HHHHHHHHHhcCCCEEEEEECcccccchhhHHHH-----HHcCCCCeEEEECCCCCCchHHHHHHH
Confidence 3346666667789999999999987543222222 112222 24567777777666555443
No 72
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.27 E-value=3.3e-11 Score=112.59 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=54.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chHHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~~l~l~~~~~~~~~rti~VltK 216 (620)
...+.+|||||..+ ....+..++..+|+++++++. +.++. ..+.+..++... ..++++|+||
T Consensus 50 ~~~~~~~DtpG~~~-------------~~~~~~~~~~~ad~ii~V~d~-~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHEK-------------FIKNMLAGAGGIDLVLLVVAA-DEGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChHH-------------HHHHHHhhhhcCCEEEEEEEC-CCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 35789999999522 234455678899998776654 33221 222233333332 2489999999
Q ss_pred CCCCCCCC------cHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 217 LDLMDKGT------NALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 217 ~D~~~~~~------~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+|+..... +..+.+.... .....++.+++.++.++++
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 114 ADLVDEDWLELVEEEIRELLAGTF-LADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEeCCCCcCHHH
Confidence 99975421 1112221100 0134566666666655543
No 73
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.26 E-value=5.1e-11 Score=111.24 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=88.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++++|||||+++|++..+.+......+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--------------------------------------------- 36 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE--------------------------------------------- 36 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---------------------------------------------
Confidence 69999999999999999999887633221111100
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~~l 197 (620)
+ ....+.+. .....+.|+|+||.. ....+...+++.+|++|++++..+..-. -..++
T Consensus 37 -----~--~~~~~~~~-~~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04113 37 -----F--GSKIIRVG-GKRVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWL 95 (161)
T ss_pred -----E--EEEEEEEC-CEEEEEEEEECcchH-------------HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00011111 122467899999953 2345677889999999887765542211 12233
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
...+.....+.+.++|.||+|+........+.........+..|+.+++.+..++.+.+
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 33344444568899999999997643321111211122334667788777766655433
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.26 E-value=4.8e-11 Score=111.60 Aligned_cols=102 Identities=15% Similarity=0.239 Sum_probs=58.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH---HH-HHHHHhCCCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---AM-KLAREVDPTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~---~l-~l~~~~~~~~~rti~Vlt 215 (620)
..+.++||||... ...+...|++.+|+++++++..+.. .-.. +. .+.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQEE-------------FSAMREQYMRTGEGFLLVFSVTDRG-SFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 4678999999532 2456678889999998877554321 1111 11 222333445689999999
Q ss_pred cCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
|+|+........+.........+..|+.+++.++.++++.
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 116 KADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred CccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHH
Confidence 9998754321111111111223446677776666555543
No 75
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.26 E-value=4.3e-11 Score=110.55 Aligned_cols=149 Identities=18% Similarity=0.197 Sum_probs=84.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+++|.+++|||||+|+|.+..+.+... .|..+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~--~t~~~------------------------------------------- 35 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK--STIGV------------------------------------------- 35 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC--Cceee-------------------------------------------
Confidence 379999999999999999999987633211 11000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH---
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD--- 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~--- 195 (620)
......+.+. .....+.++|+||.. ....+...++++.|++|++++....+ ....
T Consensus 36 -------~~~~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~ 93 (159)
T cd00154 36 -------DFKSKTIEID-GKTVKLQIWDTAGQE-------------RFRSITPSYYRGAHGAILVYDITNRE-SFENLDK 93 (159)
T ss_pred -------eeEEEEEEEC-CEEEEEEEEecCChH-------------HHHHHHHHHhcCCCEEEEEEECCCHH-HHHHHHH
Confidence 0001111111 122578899999953 23456788899999998877654422 1122
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
++.........+.++++|+||+|+..+.....+............|+.+....+.++++
T Consensus 94 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 94 WLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEE 152 (159)
T ss_pred HHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 23333333334689999999999973222111111111112345666666665554443
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.25 E-value=9.3e-11 Score=109.78 Aligned_cols=102 Identities=22% Similarity=0.165 Sum_probs=58.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc--hHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||. +....+...++..+|+++++++..+..--. ..++....... .+.+.++|+||+
T Consensus 52 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 117 (164)
T cd04101 52 VELFIFDSAGQ-------------ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKM 117 (164)
T ss_pred EEEEEEECCCH-------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 56889999994 334567788999999998877544321101 12233333333 358999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
|+.+................+..|+.+++....++++.
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 118 DLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEP 155 (164)
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHH
Confidence 98754321111111111223345666666655555443
No 77
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.25 E-value=8.1e-11 Score=109.96 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH---HHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~---l~l~~~~~~~~~rti~VltK 216 (620)
..+.++|+||.. ....+...++..+|++|+++...+. .+.+.. +.........+.++++|.||
T Consensus 49 ~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~l~~~~~~~~~~~pivvv~nK 114 (164)
T smart00175 49 VKLQIWDTAGQE-------------RFRSITSSYYRGAVGALLVYDITNR-ESFENLKNWLKELREYADPNVVIMLVGNK 114 (164)
T ss_pred EEEEEEECCChH-------------HHHHHHHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 367899999942 3345677888999999888765442 112222 22222223247899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
+|+........+.........+..|+.+....+.++++.
T Consensus 115 ~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 115 SDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEA 153 (164)
T ss_pred hhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 998753221111111111223345666666655554443
No 78
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.25 E-value=8.1e-11 Score=110.28 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=85.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++++|||||+|++++..+.+ .. .|+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~-----~~t~------------------------------------------ 33 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KY-----LPTI------------------------------------------ 33 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CC-----CCcc------------------------------------------
Confidence 69999999999999999999987622 11 1100
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l 197 (620)
++......+.+.+ ....+.++||||.. ....+...|++.++++|++++..+..- ....++
T Consensus 34 ----~~~~~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 95 (168)
T cd04119 34 ----GIDYGVKKVSVRN-KEVRVNFFDLSGHP-------------EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWL 95 (168)
T ss_pred ----ceeEEEEEEEECC-eEEEEEEEECCccH-------------HHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHH
Confidence 0000011111211 23578899999953 224566778899999988776543211 012233
Q ss_pred HHHHH-hCC----CCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 198 KLARE-VDP----TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 198 ~l~~~-~~~----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
..... ..+ .+.+.++|.||+|+.++.....+.........+..|+.+.+.++.++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 33332 222 468899999999997432211111100011223457777777666554433
No 79
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.24 E-value=3e-11 Score=112.92 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=51.2
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCC---eEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~---~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
.++++||||+..... +.+..+.+..+...|+...+ .+++ +.+..... +.....+.+.+...+.++++|+||+
T Consensus 46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~-~~~~~~~~~~l~~~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVL-LIDSRHGP-TEIDLEMLDWLEELGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEE-EEEcCcCC-CHhHHHHHHHHHHcCCCEEEEEEch
Confidence 899999999876432 33345667777778887643 4444 44444332 2333445566666678999999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|++..+
T Consensus 121 D~~~~~ 126 (170)
T cd01876 121 DKLKKS 126 (170)
T ss_pred hcCChH
Confidence 998654
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.24 E-value=8.1e-11 Score=110.01 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=83.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++++|||||+|++++.++.+.. ...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~-------------------------------------------- 37 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAA-------------------------------------------- 37 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCcccee--------------------------------------------
Confidence 7999999999999999999999863311 1111000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l 197 (620)
+. ...+.+. .....+.++|+||-. ....+...|++.+|++|++++..+.+ +. ...++
T Consensus 38 -----~~--~~~v~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 96 (163)
T cd01860 38 -----FL--TQTVNLD-DTTVKFEIWDTAGQE-------------RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWV 96 (163)
T ss_pred -----EE--EEEEEEC-CEEEEEEEEeCCchH-------------HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 00 0001111 112457899999932 23455667889999998877655432 11 12222
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
..++.....+.+.++|.||+|+.+......+............|+.+.+..+.++.+
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNE 153 (163)
T ss_pred HHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 333333334577999999999874332111111111122235567777666555444
No 81
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.24 E-value=7.3e-11 Score=111.29 Aligned_cols=153 Identities=13% Similarity=0.211 Sum_probs=84.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|.+++|||||+|++++..+.+.....++..+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-------------------------------------------- 37 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF-------------------------------------------- 37 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEE--------------------------------------------
Confidence 699999999999999999999875222111111000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch-HHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~-~~l 197 (620)
. ...+.+.+ ....+.++|+||.. ....+...|++.+|++|++++..+.. +... .+.
T Consensus 38 ------~--~~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 95 (172)
T cd01862 38 ------L--TKEVTVDD-KLVTLQIWDTAGQE-------------RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWR 95 (172)
T ss_pred ------E--EEEEEECC-EEEEEEEEeCCChH-------------HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00011111 12357899999942 23456678899999998877544321 1111 111
Q ss_pred -HHHHHhC---CCCCceEEEeccCCCCCCCCcHHHHHhCCccccC-CCeeEEeeCChhhhhccCCH
Q 007054 198 -KLAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDM 258 (620)
Q Consensus 198 -~l~~~~~---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-lg~~~v~~~s~~~~~~~~~~ 258 (620)
.+..... +.+.++++|+||+|+..+.....+.........+ ..++.+++..+.+++..+..
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 161 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFET 161 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHH
Confidence 1223333 3478999999999998533211111111111222 46777777766665544443
No 82
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.24 E-value=8.6e-11 Score=109.65 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=58.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHH---hCCCCCceEEE
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLARE---VDPTGERTFGV 213 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~---~~~~~~rti~V 213 (620)
...+.++||||... ...+...|++.+|++|++++..+.. +. ....+..... +...+.|+++|
T Consensus 44 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 110 (162)
T cd04157 44 NLSFTAFDMSGQGK-------------YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF 110 (162)
T ss_pred CEEEEEEECCCCHh-------------hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence 45688999999532 3456678899999998877654321 10 1112222211 12347899999
Q ss_pred eccCCCCCCCC--cHHHHHhCCc-cccCCCeeEEeeCChhhhhccC
Q 007054 214 LTKLDLMDKGT--NALDVLEGRS-YRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 214 ltK~D~~~~~~--~~~~~l~~~~-~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
+||+|+.+... +..+.+.-.. ......++.+.+.++.++++.+
T Consensus 111 ~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 111 ANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred EeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 99999975432 1122211111 0111235566666666655443
No 83
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.23 E-value=8.7e-11 Score=109.70 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=85.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|.+|+|||||++++++..+ +.+....+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 37 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSY------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhE-------------------------------------------
Confidence 699999999999999999998865 322222211000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l 197 (620)
-...........+.++||||... ...+...+++..++++++++..+.+ +. ...+.
T Consensus 38 ----------~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T cd04139 38 ----------RKKVVLDGEDVQLNILDTAGQED-------------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFR 94 (164)
T ss_pred ----------EEEEEECCEEEEEEEEECCChhh-------------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00001111234688999999532 2455667888999988876543321 10 11222
Q ss_pred H-HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 198 K-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 198 ~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
. +.+.......|+++|+||+|+.+...............++.+|+.+++..+.++++.+
T Consensus 95 ~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 95 EQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 2 2332234578999999999998632211111111122334567777777766655443
No 84
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.23 E-value=1.1e-10 Score=109.62 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=48.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||||- .....+...+++.+|+++++++..+.. +. ...++.......+.+.+.|+|.||+
T Consensus 52 ~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 118 (165)
T cd01864 52 VKLQIWDTAGQ-------------ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKC 118 (165)
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 46889999993 234567788899999998877655432 11 1234444444445578899999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|+....
T Consensus 119 Dl~~~~ 124 (165)
T cd01864 119 DLEEQR 124 (165)
T ss_pred cccccc
Confidence 997543
No 85
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.23 E-value=6.6e-11 Score=110.52 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHh-CCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREV-DPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~-~~~~~rti~VltK 216 (620)
..+.|+||||... ...+...|++.+++++++++..+.. +. ...++...... ...+.|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (163)
T cd04136 49 CMLEILDTAGTEQ-------------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNK 115 (163)
T ss_pred EEEEEEECCCccc-------------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4678999999532 2445677889999998876544321 11 11122222222 2346899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
+|+.+......+.........+.+|+.+++.++.++.+.
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 116 CDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred ccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 998753321111111111122356777777666655443
No 86
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.23 E-value=6.3e-11 Score=110.61 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=57.2
Q ss_pred EEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 144 LIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 144 lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+|||||...... +..+.+ ..+++.+|+++++++..+.+-..... +.. +. .+.++++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~~--------~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~~--~~~-~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHP--------RWYHAL-ITTLQDVDMLIYVHGANDPESRLPAG--LLD-IG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCH--------HHHHHH-HHHHhcCCEEEEEEeCCCcccccCHH--HHh-cc-CCCCeEEEEEccccCccc
Confidence 699999864221 222333 34578999998876554332111111 222 22 257899999999985422
Q ss_pred Cc-HHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 224 TN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 224 ~~-~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
.+ ..+.+.. .....+++.+++++++++++.+....
T Consensus 108 ~~~~~~~~~~--~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 108 VAATRKLLLE--TGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred HHHHHHHHHH--cCCCCCEEEEECCCccCHHHHHHHHH
Confidence 11 1222211 11124788888888888776655443
No 87
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.23 E-value=9e-11 Score=109.87 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=84.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++|+|||||+|++++..+ +.....++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~-------------------------------------------- 36 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDS-------------------------------------------- 36 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhh--------------------------------------------
Confidence 799999999999999999998875 22211111000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l 197 (620)
+ ...+. .......+.++||||..+ ...+...|++.+|+++++++..+.. +. ...+.
T Consensus 37 -----~---~~~~~-~~~~~~~l~i~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T smart00173 37 -----Y---RKQIE-IDGEVCLLDILDTAGQEE-------------FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFR 94 (164)
T ss_pred -----E---EEEEE-ECCEEEEEEEEECCCccc-------------chHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00011 111234678999999543 2445667888999987766543321 10 01111
Q ss_pred H-HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 198 K-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 198 ~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
. +.+.......|+++|.||+|+.+......+.........+..|+.+++.++.++++.+.
T Consensus 95 ~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 95 EQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHH
Confidence 2 22223334578999999999976432111111111122335677777777666554433
No 88
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.22 E-value=1e-10 Score=109.15 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=58.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||||. +....+...|++.+++++++.+..+.+ +.. ..++....... .+.|+++|.||+
T Consensus 51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECh
Confidence 46889999993 234566778999999988876544322 100 11222222222 368999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
|+..+.....+........++..|+.+.+..+.++++
T Consensus 117 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 117 DLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9976433111111111222345667777666555443
No 89
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.21 E-value=1e-10 Score=111.86 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...++||||||..+ .......++..+|++++++++. ... ..........+...+.++++|+||+|
T Consensus 61 ~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i~v~d~~-~~~-~~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAILVVDAN-EGV-QPQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEEEEEECC-CCC-cHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 46899999999643 2345667788999998866543 322 22222333333335789999999999
Q ss_pred CCCC
Q 007054 219 LMDK 222 (620)
Q Consensus 219 ~~~~ 222 (620)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 90
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.20 E-value=2e-10 Score=109.41 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch---HHHHHHHHh-CCCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREV-DPTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~---~~l~l~~~~-~~~~~rti~Vlt 215 (620)
..+.|+||||- +....+...|++++|++|++++..+.+ +-. .++...... ...+.++++|.|
T Consensus 63 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLIFDLTNEQ-SFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCCh-------------HHHHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 35789999993 345667788999999998877654321 111 222222222 123578999999
Q ss_pred cCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
|+|+.+......+.........+..|+.+++.++.++++.+.
T Consensus 129 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 129 KADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVE 170 (180)
T ss_pred CccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999975432111111111112334566666666655544333
No 91
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.20 E-value=2.6e-10 Score=109.21 Aligned_cols=115 Identities=19% Similarity=0.354 Sum_probs=71.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|.+|||||||++++++..+.. . .||
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~-~------~~t------------------------------------------- 34 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVN-T------VPT------------------------------------------- 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC-c------CCc-------------------------------------------
Confidence 79999999999999999999876521 0 121
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH---
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~--- 196 (620)
.++....+.+.+.......+.++||||.. ....+...|++.+|++|++++..+.+- ....
T Consensus 35 ---~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~~-~~~~~~~ 97 (183)
T cd04152 35 ---KGFNTEKIKVSLGNSKGITFHFWDVGGQE-------------KLRPLWKSYTRCTDGIVFVVDSVDVER-MEEAKTE 97 (183)
T ss_pred ---cccceeEEEeeccCCCceEEEEEECCCcH-------------hHHHHHHHHhccCCEEEEEEECCCHHH-HHHHHHH
Confidence 00111111222212234578999999952 235567788999999988776544211 1111
Q ss_pred H-HHHHHhCCCCCceEEEeccCCCCC
Q 007054 197 M-KLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 197 l-~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
+ .+.+.....+.|+++|+||+|+..
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccc
Confidence 1 122333345789999999999864
No 92
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.20 E-value=1.2e-10 Score=108.30 Aligned_cols=103 Identities=12% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch-HHH-HHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DAM-KLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~-~~l-~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||.. ....+...|++.+++++++++..+.. +..- .+. .+.+.....+.++++|.||
T Consensus 49 ~~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK 115 (162)
T cd04138 49 CLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNK 115 (162)
T ss_pred EEEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 346789999953 23556778999999988776544321 1111 112 2233334457899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
+|+..+.....+ .......++..|+.+++.++.++++.+
T Consensus 116 ~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 116 CDLAARTVSSRQ-GQDLAKSYGIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred cccccceecHHH-HHHHHHHhCCeEEEecCCCCCCHHHHH
Confidence 999764321111 111112234457777777666655433
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.20 E-value=2e-10 Score=106.88 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=57.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch---HHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++|+||-. ....+...|+..+|+++++++..+.+. -+ .++...+...+...++++|+||
T Consensus 49 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~nK 114 (162)
T cd04123 49 IDLAIWDTAGQE-------------RYHALGPIYYRDADGAILVYDITDADS-FQKVKKWIKELKQMRGNNISLVIVGNK 114 (162)
T ss_pred EEEEEEECCchH-------------HHHHhhHHHhccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 368899999932 234556677889999988776544321 11 1222334444446799999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
+|+........+.........+..++.+..+...++.+.
T Consensus 115 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 115 IDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEEL 153 (162)
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 998753321111111111223445666666665555443
No 94
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.6e-11 Score=122.94 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=107.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcc---cCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPR---GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~---~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (620)
.+.|.|.++|..|.||||+|+.|++.++ |. |..++|.+-+.+-.+...+. ..-....-.+. .+|..+...-
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~-ipGnal~vd~~---~pF~gL~~FG- 129 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGS-IPGNALVVDAK---KPFRGLNKFG- 129 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccc-cCCceeeecCC---CchhhhhhhH-
Confidence 4789999999999999999999999985 52 33344444433332222111 00000000111 2344443332
Q ss_pred HHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc
Q 007054 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (620)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~ 192 (620)
.+|-....+..+.++....++||||||+.+.... .-+-.-.....+..|+.++|.|||+.++..-|++
T Consensus 130 ----------~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIs 197 (532)
T KOG1954|consen 130 ----------NAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 197 (532)
T ss_pred ----------HHHHHHHHHhcCChhhhhheeeeccCcccccchh--cccccCChHHHHHHHHHhccEEEEEechhhcccc
Confidence 2222223334466667789999999999885432 1111123456778899999999999999888873
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.+.-+.+..+......+-+|+||.|.++..
T Consensus 198 -dEf~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 198 -DEFKRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred -HHHHHHHHHhhCCcceeEEEeccccccCHH
Confidence 334457777887788999999999999764
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.18 E-value=2.5e-10 Score=107.48 Aligned_cols=121 Identities=19% Similarity=0.277 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.+++|+|+|.+|+|||||++++++..+.| +.+..... .
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~--~--------------------------------------- 43 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGV--D--------------------------------------- 43 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceee--E---------------------------------------
Confidence 46899999999999999999999765522 11111000 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
+. ...+.+. .....+.++|+||... ...+...|+..+|+++++++..+.+- ...
T Consensus 44 --------~~--~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (169)
T cd04114 44 --------FM--IKTVEIK-GEKIKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCEESFRCLP 99 (169)
T ss_pred --------EE--EEEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 00 0001111 1123578999999532 34455678999999988776543211 012
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.++..++.....+.+.++|.||+|+.+..
T Consensus 100 ~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 100 EWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 33444455555578889999999987543
No 96
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.18 E-value=2e-10 Score=107.70 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHH-HHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLA-REVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~-~~~~~~~~rti~VltK 216 (620)
..+.++||||... ...+...|++.+|++|++++..+.. +. ...++... +.....+.|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (164)
T cd04175 49 CMLEILDTAGTEQ-------------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 115 (164)
T ss_pred EEEEEEECCCccc-------------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4678999999532 2456667899999998876543321 11 11122222 2223456899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
+|+........+........++..|+.+.+..+.++++.
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 116 CDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred CcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 999754321111111111223345666666665555443
No 97
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.17 E-value=1.1e-10 Score=121.46 Aligned_cols=132 Identities=27% Similarity=0.381 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCc-----CcccCcccccccEEEEEE
Q 007054 7 LIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDF-----LPRGSGIVTRRPLVLQLH 81 (620)
Q Consensus 7 l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~-----lP~~~~~~Tr~p~~i~l~ 81 (620)
+....+++++++..+.... -.|+|+|+.|+|||||+|||-|..- -|+|..-+|..|
T Consensus 17 ~~~~~s~i~~~l~~~~~~~-------------l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~------ 77 (376)
T PF05049_consen 17 LQEVVSKIREALKDIDNAP-------------LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP------ 77 (376)
T ss_dssp HHHHHHHHHHHHHHHHH---------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-------
T ss_pred HHHHHHHHHHHHHHhhcCc-------------eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC------
Confidence 4456677777777665432 2999999999999999999988631 122211122111
Q ss_pred ecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCcc
Q 007054 82 KTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDT 161 (620)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~ 161 (620)
. ....|+.|+++++|+||+......
T Consensus 78 ------------------------------------------------~--~Y~~p~~pnv~lWDlPG~gt~~f~----- 102 (376)
T PF05049_consen 78 ------------------------------------------------T--PYPHPKFPNVTLWDLPGIGTPNFP----- 102 (376)
T ss_dssp ------------------------------------------------E--EEE-SS-TTEEEEEE--GGGSS-------
T ss_pred ------------------------------------------------e--eCCCCCCCCCeEEeCCCCCCCCCC-----
Confidence 1 255788899999999999763221
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 162 IVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 162 ~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
..+..+++ -+..-|.+|++. + ..+ +.....+++.+...|++..+|-||+|.
T Consensus 103 ~~~Yl~~~---~~~~yD~fiii~-s--~rf-~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 PEEYLKEV---KFYRYDFFIIIS-S--ERF-TENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHHHHT---TGGG-SEEEEEE-S--SS---HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHHHHc---cccccCEEEEEe-C--CCC-chhhHHHHHHHHHcCCcEEEEEecccc
Confidence 11112111 245678776533 3 233 444567899999999999999999995
No 98
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.17 E-value=2.2e-10 Score=104.62 Aligned_cols=24 Identities=17% Similarity=0.536 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
+|++||++|+|||||+|+++|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998754
No 99
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.17 E-value=1.5e-08 Score=113.99 Aligned_cols=475 Identities=23% Similarity=0.251 Sum_probs=335.3
Q ss_pred eeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH
Q 007054 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM 169 (620)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~ 169 (620)
+..+.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...+++++......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (546)
T COG0699 3 EFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELL 82 (546)
T ss_pred cchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHH
Confidence 34455666667788999999999988888888888999999988888888999999999999988888888877777788
Q ss_pred HHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCCh
Q 007054 170 VRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ 249 (620)
Q Consensus 170 ~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~ 249 (620)
-..++...+++|....+.+.+..+......++..++ +.|+.+.++.+.+.... .+.|+..+.+...
T Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 148 (546)
T COG0699 83 DLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALE 148 (546)
T ss_pred HhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchh
Confidence 888888899998888888888878888777777765 77787777666532211 5677788888888
Q ss_pred hhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007054 250 ADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIA 329 (620)
Q Consensus 250 ~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~eL~~lg~~~~ 329 (620)
.++............+..+|..++.+.+....++...+...++..+..++....|............ .++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 220 (546)
T COG0699 149 TDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN-- 220 (546)
T ss_pred HHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch--
Confidence 8888888888888889999999999988777899999999999999999988877665555443332 22221
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhcCCCCCCchhHHHHhhhHHHHhccCCccccCChhhHHHHHHhhcCCCCCCCCchh
Q 007054 330 VDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQ 409 (620)
Q Consensus 330 ~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~i~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~~~G~~p~~f~pe~ 409 (620)
.+......|...+....+| +++... ...+.....+....+.....++.|..|..|....
T Consensus 221 --------~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (546)
T COG0699 221 --------EVLAVIQTLLKRLSELVRG-----ARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLT 279 (546)
T ss_pred --------HHHHHHHHHHHHHHHHhcc-----chhhhh--------hcccchHHHhhhhhhHHHHHcccCCCcccccccc
Confidence 2344445555555544433 333322 0001111122334555566677777776777788
Q ss_pred HHHHHHHhHHhhhhchHHHHHHHHHHHHHHHHHHHhchhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007054 410 GYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEAS 489 (620)
Q Consensus 410 af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~ 489 (620)
++..++..++..+..+..+|+..+...+..+....+. ......||.+...+...+.+............+...++.+..
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (546)
T COG0699 280 LLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEER 358 (546)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8999999999989999888888777777666332222 245688999999999999887788888888888888888888
Q ss_pred cccH---HHhh--hc---hHHH-------hhh-CCCC--------CCC---------------------------CC---
Q 007054 490 YLTV---EFFR--KL---PQEV-------EKA-GNPG--------NSG---------------------------NT--- 515 (620)
Q Consensus 490 yi~~---d~~~--~~---~~~~-------~~~-~~~~--------~~~---------------------------~~--- 515 (620)
|+++ .+.. .+ ..+. .+. .... ... ..
T Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
T COG0699 359 YINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLDA 438 (546)
T ss_pred HHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccchh
Confidence 8863 1111 00 0000 000 0000 000 00
Q ss_pred CCC-----------cccCCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 007054 516 ASQ-----------AVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQ 584 (620)
Q Consensus 516 ~~~-----------~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~~~~~~~ 584 (620)
... ............+..++.+| ..+...+.|.++++++..+.+..+...+......++.... ...
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 515 (546)
T COG0699 439 LLATLGEALRRLTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQL--EDE 515 (546)
T ss_pred hhccchHHHHHhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 000 00000111234567889999 9999999999999999999777666666666566665543 677
Q ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007054 585 LLDEDPAMMERRLQCAKRLELYKAARD 611 (620)
Q Consensus 585 ll~E~~~i~~kR~~l~~~l~~L~~A~~ 611 (620)
+..+.+.+.+.|..+.+.++.+.++..
T Consensus 516 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 516 LLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999888765
No 100
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.16 E-value=1.3e-10 Score=110.43 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...+.|+||||..+ ...++..|+..+|++|++++..+ .. ....+.....+...+.++++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~-~~-~~~~~~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLVDATQ-GV-EAQTLANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCChh-------------hHHHHHHHHHhcCeEEEEEECCC-Cc-cHhhHHHHHHHHHcCCCEEEEEECCC
Confidence 34678999999753 24466778899999988775443 22 11222222233335688999999999
Q ss_pred CCC
Q 007054 219 LMD 221 (620)
Q Consensus 219 ~~~ 221 (620)
+.+
T Consensus 131 l~~ 133 (179)
T cd01890 131 LPS 133 (179)
T ss_pred CCc
Confidence 864
No 101
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.16 E-value=1.4e-10 Score=114.15 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=87.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|++||++|+|||||++.+++..| +....... . +.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~-~---~d---------------------------------------- 36 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTI-G---LD---------------------------------------- 36 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCce-e---EE----------------------------------------
Confidence 699999999999999999998865 22211100 0 00
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~~l 197 (620)
+ ....+.+.+.....+.|+||||. +....+...|++.+|++|++++..+..- . ...++
T Consensus 37 -----~--~~~~i~~~~~~~~~~~i~Dt~G~-------------~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~ 96 (215)
T cd04109 37 -----F--FSKRVTLPGNLNVTLQVWDIGGQ-------------SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWY 96 (215)
T ss_pred -----E--EEEEEEeCCCCEEEEEEEECCCc-------------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00011121212346789999993 2235677788999999988776544211 0 11233
Q ss_pred HHHHHhCC---CCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 198 KLAREVDP---TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 198 ~l~~~~~~---~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
..+....+ ...++++|.||+|+.+......+.........+.+|+.+++.++.++++.+...
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l 161 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQL 161 (215)
T ss_pred HHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 33443322 234689999999997433211111111112234557777777766665544433
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.16 E-value=3.7e-10 Score=106.95 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-++|+++|.+++|||||+++|+|..+ + +..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~------~~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-D------TISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-C------CcCCc----------------------------------------
Confidence 457999999999999999999998743 1 11110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~ 194 (620)
.++....+ .+ +...+.++||||.. ....+...|++.+|+++++++..+.. +.. .
T Consensus 46 ------~g~~~~~~--~~---~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (173)
T cd04154 46 ------LGFQIKTL--EY---EGYKLNIWDVGGQK-------------TLRPYWRNYFESTDALIWVVDSSDRLRLDDCK 101 (173)
T ss_pred ------cccceEEE--EE---CCEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 00111111 11 13568999999953 23556778899999998877654431 111 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCCc-cccCCCeeEEeeCChhhhhc
Q 007054 195 DAM-KLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRS-YRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 195 ~~l-~l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~lg~~~v~~~s~~~~~~ 254 (620)
.++ .+.+.....+.++++|+||+|+..... +..+.+.... ......|+.+++.++.++++
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 111 122222224689999999999975432 1222222110 11223466666665555543
No 103
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.16 E-value=2.7e-10 Score=109.80 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhC---CCCCceEEEe
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVD---PTGERTFGVL 214 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~---~~~~rti~Vl 214 (620)
..+.|+||||.. ....+...|++.+|++|++++..+.. +. -..++....... +.+.++|+|.
T Consensus 47 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 47 CMLEVLDTAGQE-------------EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEEECCCch-------------hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 358899999942 23456677999999998877544321 10 122333333332 2467899999
Q ss_pred ccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 215 tK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
||+|+.+......+.........+..|+.+++..+.++++.+....
T Consensus 114 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 114 NKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred EChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999975332111111111122334577777777666665555443
No 104
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=3.9e-10 Score=110.53 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=88.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|++|+|||||++.+++..+-+. .. |+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~-----~ti----------------------------------------- 35 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SD-----PTV----------------------------------------- 35 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CC-----cee-----------------------------------------
Confidence 4899999999999999999998875221 11 100
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~~ 196 (620)
| ..+.. ..+.+.......+.++||||.. ....+...|++++|++|++++..+..- . ...+
T Consensus 36 -~--~d~~~--~~i~~~~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~ 97 (211)
T cd04111 36 -G--VDFFS--RLIEIEPGVRIKLQLWDTAGQE-------------RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDW 97 (211)
T ss_pred -c--eEEEE--EEEEECCCCEEEEEEEeCCcch-------------hHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHH
Confidence 0 00000 0011111112368899999942 235567789999999988776544210 0 1122
Q ss_pred HHHHH-HhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 197 MKLAR-EVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 197 l~l~~-~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
+..+. ...+...+.++|.||+|+.+......+.........+.+|+.+.+.++.++++.+..+.
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 33222 23344566789999999976432111111111223446677777776666655544443
No 105
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.16 E-value=4.1e-10 Score=106.52 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=85.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|++||++++|||||++++++..| +....+....-
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~-------------------------------------------- 36 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVD-------------------------------------------- 36 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeE--------------------------------------------
Confidence 699999999999999999999875 32221111000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l 197 (620)
+ ....+.+.+ ....+.|+||||.. ....+...|++.+|+++++++..+.+ +.. ..++
T Consensus 37 -----~--~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 37 -----F--EMERFEILG-VPFSLQLWDTAGQE-------------RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred -----E--EEEEEEECC-EEEEEEEEeCCChH-------------HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 0 001111211 12468899999953 23556678899999998877554321 111 1223
Q ss_pred HHH-HHhCCCCCceEEEeccCCCCCCCC-c-HHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 198 KLA-REVDPTGERTFGVLTKLDLMDKGT-N-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 198 ~l~-~~~~~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
... +...+...++++|.||.|+.+... . ..+........++..|+.+++.++.++.+.+...
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 222 223344456899999999865322 1 1111111112233456666666665555444433
No 106
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.16 E-value=4.6e-10 Score=103.75 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=69.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
.|+++|.+|||||||+|+|.|.++ +... .+|...
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~-------------------------------------------- 34 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF-SEDT-IPTVGF-------------------------------------------- 34 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC-CcCc-cCCCCc--------------------------------------------
Confidence 489999999999999999999875 2111 111000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH-
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~- 198 (620)
. ... +... ...+.++||||.. ....+...|+..+|+++++++....+- ......
T Consensus 35 ------~--~~~--~~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~ 89 (159)
T cd04159 35 ------N--MRK--VTKG-NVTLKVWDLGGQP-------------RFRSMWERYCRGVNAIVYVVDAADRTA-LEAAKNE 89 (159)
T ss_pred ------c--eEE--EEEC-CEEEEEEECCCCH-------------hHHHHHHHHHhcCCEEEEEEECCCHHH-HHHHHHH
Confidence 0 011 1111 2568999999953 235567788999999887665433221 111111
Q ss_pred ---HHHHhCCCCCceEEEeccCCCCCCC
Q 007054 199 ---LAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 199 ---l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+.......+.|.++|+||+|+.+..
T Consensus 90 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 90 LHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 1111122467999999999987543
No 107
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.16 E-value=5e-10 Score=104.33 Aligned_cols=111 Identities=19% Similarity=0.299 Sum_probs=68.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|.+|+|||||++++++..+. . ..|+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~------~~~t~------------------------------------------ 31 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-T------TIPTV------------------------------------------ 31 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-c------ccCcc------------------------------------------
Confidence 5899999999999999999998751 1 11210
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l 199 (620)
++.... +..+....+.++||||... ...+...|+..+|++|++++..+.. .-......
T Consensus 32 ----~~~~~~----~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~iv~v~D~~~~~-~~~~~~~~ 89 (160)
T cd04156 32 ----GFNVEM----LQLEKHLSLTVWDVGGQEK-------------MRTVWKCYLENTDGLVYVVDSSDEA-RLDESQKE 89 (160)
T ss_pred ----CcceEE----EEeCCceEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCcHH-HHHHHHHH
Confidence 000000 1112335789999999532 3455667889999998876554322 11222111
Q ss_pred HHH----hCCCCCceEEEeccCCCCC
Q 007054 200 ARE----VDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 200 ~~~----~~~~~~rti~VltK~D~~~ 221 (620)
... ....+.++++|+||+|+.+
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 90 LKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhchhhcCCCEEEEEECccccc
Confidence 221 1124689999999999864
No 108
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.15 E-value=3.5e-10 Score=105.03 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=84.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|.++||||||++++++..+ +......+..+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 36 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSY------------------------------------------- 36 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeE-------------------------------------------
Confidence 589999999999999999998863 333332222110
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH---
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~--- 196 (620)
.....+ ......+.++|+||... ...+...+++..|++|++++..+.+. ....
T Consensus 37 ---------~~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~ 92 (160)
T cd00876 37 ---------RKTIVV-DGETYTLDILDTAGQEE-------------FSAMRDLYIRQGDGFILVYSITDRES-FEEIKGY 92 (160)
T ss_pred ---------EEEEEE-CCEEEEEEEEECCChHH-------------HHHHHHHHHhcCCEEEEEEECCCHHH-HHHHHHH
Confidence 000111 11124678999999532 34556678889999988776544321 1111
Q ss_pred HHHHHHhCC-CCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 197 MKLAREVDP-TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 197 l~l~~~~~~-~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
........+ .+.++++|+||+|+........+.........+.+|+.+.+....++++
T Consensus 93 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 93 REQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDE 151 (160)
T ss_pred HHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHH
Confidence 222222222 4789999999999986332111111111122235667776666555443
No 109
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.15 E-value=3.3e-10 Score=110.01 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|++|+|||||++.+.+..+.+ .. .+|..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~------------------------------------------ 40 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG------------------------------------------ 40 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc------------------------------------------
Confidence 45799999999999999999999887511 11 11100
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH-
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~- 195 (620)
+.-....+.+. .....+.|+||||-. ....+...|+..++++|++++..+.. .-..
T Consensus 41 --------~~~~~~~~~~~-~~~~~l~l~D~~G~~-------------~~~~~~~~~~~~a~~iilv~D~~~~~-s~~~~ 97 (199)
T cd04110 41 --------VDFKIRTVEIN-GERVKLQIWDTAGQE-------------RFRTITSTYYRGTHGVIVVYDVTNGE-SFVNV 97 (199)
T ss_pred --------ceeEEEEEEEC-CEEEEEEEEeCCCch-------------hHHHHHHHHhCCCcEEEEEEECCCHH-HHHHH
Confidence 00000111111 122367899999942 23556778999999988877655432 1122
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 196 --AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 196 --~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
++...+... ...+.++|.||+|+.+................+..|+.+.+..+.++.+.+..+.
T Consensus 98 ~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 98 KRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred HHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 222222222 2468899999999875432111111111122345677777777776666555443
No 110
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=3.8e-10 Score=109.80 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=58.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH---HHHHHH-h---CCCCCceEE
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MKLARE-V---DPTGERTFG 212 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~---l~l~~~-~---~~~~~rti~ 212 (620)
..+.|+||||.. ....+...|+++++++|++++..+.. .-... +..... + .....|+|+
T Consensus 50 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv~D~t~~~-s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQE-------------RFGGMTRVYYRGAVGAIIVFDVTRPS-TFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCch-------------hhhhhHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 467899999952 23566788999999998877644321 11111 111111 1 124578999
Q ss_pred EeccCCCCCCCCcHHHHHhCCccccC-CCeeEEeeCChhhhhccCCHH
Q 007054 213 VLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 213 VltK~D~~~~~~~~~~~l~~~~~~l~-lg~~~v~~~s~~~~~~~~~~~ 259 (620)
|.||.|+.+......+.+.......+ .+|+.+++.++.++++.+..+
T Consensus 116 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l 163 (201)
T cd04107 116 LANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFL 163 (201)
T ss_pred EEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHH
Confidence 99999997422111111111111222 456777766665555444433
No 111
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.15 E-value=3.7e-10 Score=114.94 Aligned_cols=137 Identities=18% Similarity=0.293 Sum_probs=78.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc-cccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T-r~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.|+|||..|+|||||+|+|++..+.+....... ..+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~-------~----------------------------------- 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH-------I----------------------------------- 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc-------c-----------------------------------
Confidence 799999999999999999999987544322110 000 0
Q ss_pred cCCCCCccCccEEEEEecCC-CCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhh------------c--CCCeEEE
Q 007054 119 TGKTKQISPIPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYV------------E--KPNSVIL 182 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~-~~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~yi------------~--~~~~iil 182 (620)
. ....-......+...+ ...+++|||||+.+.... ...+.+...+.+....|+ . +.|++++
T Consensus 44 -~--~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly 120 (276)
T cd01850 44 -D--KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLY 120 (276)
T ss_pred -C--CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEE
Confidence 0 0000001111122111 246999999999864321 112223333333333332 2 2566766
Q ss_pred EeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 183 ~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
++.+...++ ....+.+++.+.. +.++|+|+||+|++...
T Consensus 121 ~i~~~~~~l-~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 121 FIEPTGHGL-KPLDIEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred EEeCCCCCC-CHHHHHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 666655455 3334677888765 78999999999998643
No 112
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.15 E-value=4.1e-10 Score=105.75 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHH----hCCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLARE----VDPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~----~~~~~~rti~Vl 214 (620)
...+.++||||... ...+...++..+|+++++++..+.+ ........... ....+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQES-------------LRSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 46889999999642 3456677899999998877654322 11122222222 223478999999
Q ss_pred ccCCCCCC
Q 007054 215 TKLDLMDK 222 (620)
Q Consensus 215 tK~D~~~~ 222 (620)
||+|+...
T Consensus 115 NK~D~~~~ 122 (167)
T cd04160 115 NKQDLPDA 122 (167)
T ss_pred EccccccC
Confidence 99998654
No 113
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.14 E-value=2.6e-10 Score=106.67 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=55.8
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHh-CCCCCceEEEeccC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREV-DPTGERTFGVLTKL 217 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~-~~~~~rti~VltK~ 217 (620)
.+.|+||||... ...+...|++++|++|++++..+.. +. ...+....... ...+.|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTEQ-------------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCccc-------------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 578999999532 2345666889999998876554321 11 11222222222 33578999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
|+..................+.+|+.+.++++.++++.
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 117 DLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNEL 154 (163)
T ss_pred cchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 98653321111111111122345666666665555443
No 114
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.13 E-value=4.4e-10 Score=104.71 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc--chHHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA--TSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~--~~~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||... ...+...|+..++++|++++..+.. +. ......+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQTS-------------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 5688999999642 3556778999999998877654321 10 111112223222246899999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 998753
No 115
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.13 E-value=4.2e-10 Score=106.31 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch---HHHHHHHHh-CCCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREV-DPTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~---~~l~l~~~~-~~~~~rti~Vlt 215 (620)
..+.++||||... .-..+...|++++|++|++++..+.. .-+ .++..+... .....|+++|.|
T Consensus 51 ~~~~i~Dt~G~~~------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~iiv~n 117 (170)
T cd04115 51 IKVQLWDTAGQER------------FRKSMVQHYYRNVHAVVFVYDVTNMA-SFHSLPSWIEECEQHSLPNEVPRILVGN 117 (170)
T ss_pred EEEEEEeCCChHH------------HHHhhHHHhhcCCCEEEEEEECCCHH-HHHhHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4688999999432 11245677889999998877655422 112 223233332 234689999999
Q ss_pred cCCCCCCCCcHHHHHhCCccccCCCeeEEeeCC
Q 007054 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (620)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s 248 (620)
|+|+........+............|+.+.+.+
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 118 KCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred CccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 999875432111111111122346677777665
No 116
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.13 E-value=4.6e-10 Score=105.55 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=70.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|+.|+|||||+|++.+..+ |.... .| .+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~-~~-~~-------------------------------------------- 34 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVP-RV-LP-------------------------------------------- 34 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCC-Cc-cc--------------------------------------------
Confidence 699999999999999999998765 32211 01 01
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~ 196 (620)
.+ .+...+. .....+.++||||... .......++..+|+++++++..+.+ +.. ..+
T Consensus 35 ----~~---~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 93 (166)
T cd01893 35 ----EI---TIPADVT-PERVPTTIVDTSSRPQ-------------DRANLAAEIRKANVICLVYSVDRPSTLERIRTKW 93 (166)
T ss_pred ----ce---Eeeeeec-CCeEEEEEEeCCCchh-------------hhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111111 1234688999999643 1234566778999987776543321 111 123
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+..++...+ +.++++|.||+|+.+..
T Consensus 94 ~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 94 LPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHHhCC-CCCEEEEEEchhccccc
Confidence 444555444 68999999999997644
No 117
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.13 E-value=3.4e-10 Score=106.33 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhC---CCCCceEEEe
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVD---PTGERTFGVL 214 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~---~~~~rti~Vl 214 (620)
..+.++||||... ...+...|+..++++|++.+..+.. +. ...++...+... ....|.++|.
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (165)
T cd04140 49 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG 115 (165)
T ss_pred EEEEEEECCCCCc-------------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 5688999999643 1344566788899988766544322 10 112233334332 2467999999
Q ss_pred ccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 215 tK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
||+|+........+.........+.+|+.+++..+.++++.+.
T Consensus 116 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 116 NKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred ECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 9999975322111111111122345677777777766654433
No 118
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.12 E-value=8.9e-10 Score=105.91 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||.. ....+...+++++|++|++++..+.+- . ...++.......+...+.++|.||.
T Consensus 49 ~~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~ 115 (188)
T cd04125 49 IKLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKS 115 (188)
T ss_pred EEEEEEECCCcH-------------HHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 467899999942 234567788999999988776543221 0 1112333344444457899999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
|+.+................+..|+.+.+..+.++++.+...
T Consensus 116 Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 116 DLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILL 157 (188)
T ss_pred CCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 987543211111111111234467778777776666554443
No 119
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.12 E-value=4.2e-10 Score=105.32 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=70.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++++|||||++.+++..+-|... .|..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEE----------------------------------------
Confidence 69999999999999999999887633211 111110000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~~l 197 (620)
..+.+ ......+.++||||-. ....+...|++.+|++|++++..+..- . ...++
T Consensus 40 ----------~~~~~-~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04124 40 ----------HNAKF-EGKTILVDFWDTAGQE-------------RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWY 95 (161)
T ss_pred ----------EEEEE-CCEEEEEEEEeCCCch-------------hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011 1122467899999942 345677889999999988776543221 0 12233
Q ss_pred HHHHHhCCCCCceEEEeccCCCC
Q 007054 198 KLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~ 220 (620)
...+...+ ..+.++|+||+|+.
T Consensus 96 ~~i~~~~~-~~p~ivv~nK~Dl~ 117 (161)
T cd04124 96 EELREYRP-EIPCIVVANKIDLD 117 (161)
T ss_pred HHHHHhCC-CCcEEEEEECccCc
Confidence 33343333 57999999999985
No 120
>PLN03118 Rab family protein; Provisional
Probab=99.12 E-value=6.5e-10 Score=109.02 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=87.0
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-.+|+|||++|+|||||+++|++..+ +. ....+...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~-~~~t~~~~------------------------------------------ 49 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-ED-LAPTIGVD------------------------------------------ 49 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCceeE------------------------------------------
Confidence 35999999999999999999998764 11 11110000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch--
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-- 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~-- 194 (620)
.....+.+ +.....+.|+||||... ...+...|++.+|++|++++..+.+ +..-
T Consensus 50 ---------~~~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~ 106 (211)
T PLN03118 50 ---------FKIKQLTV-GGKRLKLTIWDTAGQER-------------FRTLTSSYYRNAQGIILVYDVTRRETFTNLSD 106 (211)
T ss_pred ---------EEEEEEEE-CCEEEEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 00011111 11124678999999532 3455678899999998877655432 1111
Q ss_pred HHHHHHHHhC-CCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 195 DAMKLAREVD-PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 195 ~~l~l~~~~~-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
.+........ ..+.+.++|.||+|+........+.........+..|+.+.+..+.++++.+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 173 (211)
T PLN03118 107 VWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELA 173 (211)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 1222222222 23568899999999875432111111111112334567777777666665554443
No 121
>PLN03110 Rab GTPase; Provisional
Probab=99.12 E-value=6.9e-10 Score=109.25 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=86.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.-+|+|||++++|||||++++++..+ +.... .|-. +.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~-~t~g---~~-------------------------------------- 48 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLESK-STIG---VE-------------------------------------- 48 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Ccee---EE--------------------------------------
Confidence 45899999999999999999999875 21111 1100 00
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~ 195 (620)
+. ...+.+. .....+.|+||||- +....+...|++.++++|++++..+.. +. ...
T Consensus 49 -------~~--~~~v~~~-~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 49 -------FA--TRTLQVE-GKTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR 105 (216)
T ss_pred -------EE--EEEEEEC-CEEEEEEEEECCCc-------------HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence 00 0011111 12246889999993 234567788999999988776544321 11 123
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
++..++...+.+.+.++|.||+|+........+.........+.+|+.+.+..+.++++
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK 164 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 45555555556789999999999864322111111111112345566666655554443
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.12 E-value=6.4e-10 Score=103.46 Aligned_cols=72 Identities=25% Similarity=0.371 Sum_probs=46.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHH-HHHHHHhCCCCCceEEEec
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA-MKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~-l~l~~~~~~~~~rti~Vlt 215 (620)
...+.++||||... ...+...++..+|+++++++..+.+ +.. ... ..+.+.....+.++++|+|
T Consensus 42 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 42 NVSFTVWDVGGQDK-------------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 35789999999543 2445677889999998877665432 111 111 1222333345789999999
Q ss_pred cCCCCCCC
Q 007054 216 KLDLMDKG 223 (620)
Q Consensus 216 K~D~~~~~ 223 (620)
|+|+....
T Consensus 109 K~D~~~~~ 116 (158)
T cd00878 109 KQDLPGAL 116 (158)
T ss_pred ccCCcccc
Confidence 99987643
No 123
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.11 E-value=7.7e-10 Score=107.47 Aligned_cols=151 Identities=14% Similarity=0.195 Sum_probs=87.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
||+|+|+.++||||+++.+.+..| +.... .|-.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~-~Ti~--------------------------------------------- 34 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACK-SGVG--------------------------------------------- 34 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCC-Ccce---------------------------------------------
Confidence 899999999999999999998766 21111 1100
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l 197 (620)
.+|... .+.+.+ ....+.|+||||- +....+...|++++|++|++++..+.+ +. ...++
T Consensus 35 ---~~~~~~--~i~~~~-~~v~l~iwDtaGq-------------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~ 95 (202)
T cd04120 35 ---VDFKIK--TVELRG-KKIRLQIWDTAGQ-------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 95 (202)
T ss_pred ---eEEEEE--EEEECC-EEEEEEEEeCCCc-------------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 001000 111211 2357889999994 234667788999999998877654422 11 12234
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccc-cCCCeeEEeeCChhhhhccC
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~lg~~~v~~~s~~~~~~~~ 256 (620)
...+.....+.++|+|.||+|+.+............... .+..|+.+++.++.++++.+
T Consensus 96 ~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 96 KMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred HHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 455555556789999999999864332111111100011 12446666666555554433
No 124
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.11 E-value=5.1e-10 Score=108.00 Aligned_cols=106 Identities=13% Similarity=0.216 Sum_probs=57.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||... ...+...|+..+|++|++++..+.. +.. ..++..++...+ +.++++|.||+
T Consensus 50 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~ 115 (193)
T cd04118 50 VTLGIWDTAGSER-------------YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKS 115 (193)
T ss_pred EEEEEEECCCchh-------------hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcc
Confidence 3577999999532 2445566888999998876543321 100 123333333333 57999999999
Q ss_pred CCCCCCCcH----HHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 218 DLMDKGTNA----LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 218 D~~~~~~~~----~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
|+.+..... ...+.......+..|+.+.+.++.+++..+...
T Consensus 116 Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 161 (193)
T cd04118 116 DLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161 (193)
T ss_pred cccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 987532110 000111111223456666666666655544443
No 125
>PLN03108 Rab family protein; Provisional
Probab=99.10 E-value=1e-09 Score=107.60 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=86.3
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.-+|+|+|++++|||||++.+++..+-|.... |-..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti~~------------------------------------------ 41 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGV------------------------------------------ 41 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--Cccc------------------------------------------
Confidence 46899999999999999999999876332111 1000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc--hH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~--~~ 195 (620)
.+. ...+.+.+. ...+.++||||.. ....+...|+..+|+++++++..+..--. ..
T Consensus 42 ------~~~--~~~i~~~~~-~i~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~ 99 (210)
T PLN03108 42 ------EFG--ARMITIDNK-PIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFNHLAS 99 (210)
T ss_pred ------eEE--EEEEEECCE-EEEEEEEeCCCcH-------------HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 000 001111111 1357899999943 23456678889999998877654432111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
++...........++++|.||+|+........+.........+..|+.+.+....++++.+
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 2322333334468899999999987543211111111111234557777776666555433
No 126
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.10 E-value=6.5e-10 Score=104.72 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHH-hCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLARE-VDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~-~~~~~~rti~VltK 216 (620)
..+.++||||..+ ...+...|++.++.++++++..+.. +. ...+...... ....+.|.++|.||
T Consensus 49 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 49 CDLEILDTAGTEQ-------------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred EEEEEEeCCCccc-------------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 4678999999543 2456667888899888776544321 11 1122222222 33457899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccC-CCeeEEeeCChhhhhc
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINR 254 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~-lg~~~v~~~s~~~~~~ 254 (620)
.|+.+......+.........+ .+|+.+++.++.++++
T Consensus 116 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 116 ADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred hhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 9987543211111111111222 4577777776665544
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.10 E-value=1.8e-09 Score=103.48 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-++|+++|.+||||||+++.++|..+.. ..+|..|+.-
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~-------------------------------------- 54 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSE-------------------------------------- 54 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceE--------------------------------------
Confidence 34799999999999999999999976411 1122222110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcchH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSD 195 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~~ 195 (620)
.+.+ ....+.++||||... .+.+...|+..+|++|++++.++.+ +....
T Consensus 55 --------------~~~~---~~~~~~~~D~~G~~~-------------~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~ 104 (184)
T smart00178 55 --------------ELAI---GNIKFTTFDLGGHQQ-------------ARRLWKDYFPEVNGIVYLVDAYDKERFAESK 104 (184)
T ss_pred --------------EEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCcHHHHHHHH
Confidence 0111 235688999999642 2456678999999998877665432 11111
Q ss_pred -HH-HHHHHhCCCCCceEEEeccCCCCC
Q 007054 196 -AM-KLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 196 -~l-~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
.+ ++.+...-.+.++++|+||.|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 11 122211224689999999999853
No 128
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.10 E-value=1.3e-09 Score=101.75 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=82.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|.+|+|||||+|+|++..+.+......+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~----------------------------------------------- 34 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIG----------------------------------------------- 34 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCccc-----------------------------------------------
Confidence 689999999999999999998875221111000
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH---H
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---A 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~---~ 196 (620)
.+.....+.+ +.....+.++|+||... ...+...+++.+|+++++++..+.. .-+. +
T Consensus 35 -----~~~~~~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~ 94 (161)
T cd01863 35 -----VDFKVKTLTV-DGKKVKLAIWDTAGQER-------------FRTLTSSYYRGAQGVILVYDVTRRD-TFTNLETW 94 (161)
T ss_pred -----ceEEEEEEEE-CCEEEEEEEEECCCchh-------------hhhhhHHHhCCCCEEEEEEECCCHH-HHHhHHHH
Confidence 0000011111 12234688999999532 2445567788999998876644321 1111 2
Q ss_pred HHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 197 MKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 197 l~l~~~-~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+..... ....+.+.++|.||+|+........+... .....+..|+.+....+.++++
T Consensus 95 ~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 95 LNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FARKHNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred HHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HHHHcCCEEEEEecCCCCCHHH
Confidence 222222 34457889999999999844332222111 1112345566666665554443
No 129
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.10 E-value=4.4e-10 Score=101.10 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
+|++||..+||||||+++|.|.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 799999999999999999999865
No 130
>PTZ00369 Ras-like protein; Provisional
Probab=99.09 E-value=9.1e-10 Score=106.00 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=43.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHh-CCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREV-DPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~-~~~~~rti~VltK 216 (620)
..+.++||||... ...+...|++.++++|++++..+.+- ....+....... ...+.++++|.||
T Consensus 53 ~~l~i~Dt~G~~~-------------~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 119 (189)
T PTZ00369 53 CLLDILDTAGQEE-------------YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNK 119 (189)
T ss_pred EEEEEEeCCCCcc-------------chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 3577899999543 24456678999999988776554321 011222222222 2346789999999
Q ss_pred CCCCC
Q 007054 217 LDLMD 221 (620)
Q Consensus 217 ~D~~~ 221 (620)
+|+.+
T Consensus 120 ~Dl~~ 124 (189)
T PTZ00369 120 CDLDS 124 (189)
T ss_pred ccccc
Confidence 99854
No 131
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.09 E-value=1.5e-09 Score=102.36 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..-+|+|+|++++|||||++++++..+-+......+ . .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--~---~------------------------------------- 41 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--V---E------------------------------------- 41 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--e---E-------------------------------------
Confidence 346899999999999999999998775221111000 0 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~ 194 (620)
+. ...+.+ ......+.|+||||- +....+...|++.+|++|++.+..+.+ +.. .
T Consensus 42 --------~~--~~~~~~-~~~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (170)
T cd04116 42 --------FL--NKDLEV-DGHFVTLQIWDTAGQ-------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLS 97 (170)
T ss_pred --------EE--EEEEEE-CCeEEEEEEEeCCCh-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHH
Confidence 00 000111 112246789999993 334567778999999988765433321 111 1
Q ss_pred HHHH-HHHHh---CCCCCceEEEeccCCCCCCCCc---HHHHHhCCccccC-CCeeEEeeCChhhhhc
Q 007054 195 DAMK-LAREV---DPTGERTFGVLTKLDLMDKGTN---ALDVLEGRSYRLQ-HPWVGIVNRSQADINR 254 (620)
Q Consensus 195 ~~l~-l~~~~---~~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~-lg~~~v~~~s~~~~~~ 254 (620)
.+.. +.... .+.+.|+++|.||+|+...... ..++.. .++ ..|+.+++..+.++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCCHHH
Confidence 1221 11211 1346789999999998743221 222221 122 3566666666555443
No 132
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.09 E-value=1e-09 Score=104.04 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=85.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++|+|||||++.+.+..| |.....+.. .
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~-~-------------------------------------------- 37 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIE-D-------------------------------------------- 37 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCccc-c--------------------------------------------
Confidence 799999999999999999998775 322111110 0
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l 197 (620)
.+ ...+.+.+ ....+.|+||||.. ....+...|+..+|++|++++..+.. +.+ .++.
T Consensus 38 ----~~---~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~ 96 (172)
T cd04141 38 ----AY---KQQARIDN-EPALLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK 96 (172)
T ss_pred ----eE---EEEEEECC-EEEEEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHH
Confidence 00 00111211 12468899999953 23567778899999998877654322 111 1122
Q ss_pred HHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 198 KLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 198 ~l~~~~-~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
...... ...+.|+++|.||+|+.+......+.........+..|+.+.+..+.++++.+.
T Consensus 97 ~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 97 KLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred HHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 334443 234689999999999864321100001101112345666777666666554443
No 133
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.08 E-value=1e-09 Score=104.49 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=84.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|.+|+|||||++++++..+ +.....++....
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~------------------------------------------- 38 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTF------------------------------------------- 38 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhE-------------------------------------------
Confidence 799999999999999999998764 322211111100
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH---
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~--- 196 (620)
+ -.+.+ ......+.++||||... ...+...+....++++++++..+... -+..
T Consensus 39 ------~---~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~ 94 (180)
T cd04137 39 ------S---KIIRY-KGQDYHLEIVDTAGQDE-------------YSILPQKYSIGIHGYILVYSVTSRKS-FEVVKVI 94 (180)
T ss_pred ------E---EEEEE-CCEEEEEEEEECCChHh-------------hHHHHHHHHhhCCEEEEEEECCCHHH-HHHHHHH
Confidence 0 00011 11124678999999532 23344467778998877765544221 1111
Q ss_pred -HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 197 -MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 197 -l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
..+.+.....+.+.|+|.||+|+........+.........+..++.+++.++.++.+.+...
T Consensus 95 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 158 (180)
T cd04137 95 YDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELL 158 (180)
T ss_pred HHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 223333344567999999999987533211111111112233456777777666655544443
No 134
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.08 E-value=1.1e-09 Score=108.80 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 789999999999999999999863
No 135
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.08 E-value=3.4e-10 Score=106.61 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=42.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||.... ..+...+++.+|+++++++..+.. +.. ..++.......+ +.++++|+||
T Consensus 48 ~~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 113 (171)
T cd00157 48 VNLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTK 113 (171)
T ss_pred EEEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEcc
Confidence 36889999996531 122234567899988877654421 111 112222333233 6899999999
Q ss_pred CCCCCCC
Q 007054 217 LDLMDKG 223 (620)
Q Consensus 217 ~D~~~~~ 223 (620)
+|+.+..
T Consensus 114 ~Dl~~~~ 120 (171)
T cd00157 114 IDLRDDE 120 (171)
T ss_pred HHhhhch
Confidence 9998654
No 136
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.08 E-value=7.3e-10 Score=105.16 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-.+|+++|.+++|||||+++|++..+.+ . .+|-.+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~-~~t~~~------------------------------------------ 49 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--T-SPTIGS------------------------------------------ 49 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC--c-CCcccc------------------------------------------
Confidence 3589999999999999999998776521 1 111110
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
+ ...+.+ ....+.++||||... ...+...|++.+|++|++++..+.+- -....
T Consensus 50 ----~------~~~~~~---~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vi~V~D~s~~~~-~~~~~ 102 (174)
T cd04153 50 ----N------VEEIVY---KNIRFLMWDIGGQES-------------LRSSWNTYYTNTDAVILVIDSTDRER-LPLTK 102 (174)
T ss_pred ----c------eEEEEE---CCeEEEEEECCCCHH-------------HHHHHHHHhhcCCEEEEEEECCCHHH-HHHHH
Confidence 0 001111 135789999999632 34556678899999988776543211 11111
Q ss_pred ----HHHHHhCCCCCceEEEeccCCCCC
Q 007054 198 ----KLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 198 ----~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
.+.+.....+.+.++|+||+|+..
T Consensus 103 ~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 103 EELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 122212223579999999999865
No 137
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.08 E-value=2.7e-09 Score=102.66 Aligned_cols=113 Identities=14% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-++|+++|.+|||||||+++|++..+ . ...+|..|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~-~--~~~~T~~~~~--------------------------------------- 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL-A--QHVPTLHPTS--------------------------------------- 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-c--ccCCccCcce---------------------------------------
Confidence 467999999999999999999998764 1 1122322210
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
..+.+ ....+.++|+||.. ..+.+...|+..++.+|++++..+..- -...
T Consensus 56 -------------~~i~~---~~~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iilV~D~~~~~s-~~~~ 105 (190)
T cd00879 56 -------------EELTI---GNIKFKTFDLGGHE-------------QARRLWKDYFPEVDGIVFLVDAADPER-FQES 105 (190)
T ss_pred -------------EEEEE---CCEEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEECCcHHH-HHHH
Confidence 01111 12467899999942 234566788999999988776544311 1111
Q ss_pred HHH----HHHhCCCCCceEEEeccCCCCC
Q 007054 197 MKL----AREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 197 l~l----~~~~~~~~~rti~VltK~D~~~ 221 (620)
... .+.....+.|+++|+||+|+..
T Consensus 106 ~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 106 KEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 112 2222234689999999999864
No 138
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.07 E-value=4.7e-10 Score=125.68 Aligned_cols=109 Identities=24% Similarity=0.282 Sum_probs=68.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||..+..... .-+.+...|+. .+|.+++++++.+ .+..+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~s-------~~e~v~~~~l~~~~aDvvI~VvDat~----ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFS-------LEEEVARDYLLNEKPDLVVNVVDASN----LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccc-------hHHHHHHHHHhhcCCCEEEEEecCCc----chhhHHHHHHHHhcCCCEEEEEehh
Confidence 468999999987643221 11344555654 6888877665543 2344566666666789999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
|+.++.....+ .+.....++..++.++++++.++++..+...
T Consensus 110 Dl~~~~~i~~d-~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 110 DEAEKKGIRID-EEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred HHHHhCCChhh-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 98754321111 1111234557788899998888877666544
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.07 E-value=1.9e-09 Score=104.26 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=47.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...+.++||||..+ ...++..|++.+|+++++++..+ +...+ ...+.+.+...+.+.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~~ilV~d~~~-~~~~~-~~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHAD-------------FGGEVERVLSMVDGVLLLVDASE-GPMPQ-TRFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHhcCEEEEEEECCC-CccHH-HHHHHHHHHHcCCCEEEEEECCC
Confidence 46789999999642 34567789999999988766543 22121 22233444445789999999999
Q ss_pred CCCC
Q 007054 219 LMDK 222 (620)
Q Consensus 219 ~~~~ 222 (620)
+...
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9753
No 140
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.07 E-value=1.6e-10 Score=111.10 Aligned_cols=70 Identities=27% Similarity=0.365 Sum_probs=46.9
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEec
Q 007054 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 136 ~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~Vlt 215 (620)
......++|+||||.. +.+. .+...+..+|++|++|+ +..++ .......++.+...+.|.|+|+|
T Consensus 66 ~~~~~~i~~iDtPG~~------------~f~~-~~~~~~~~~D~ailvVd-a~~g~-~~~~~~~l~~~~~~~~p~ivvlN 130 (188)
T PF00009_consen 66 NENNRKITLIDTPGHE------------DFIK-EMIRGLRQADIAILVVD-ANDGI-QPQTEEHLKILRELGIPIIVVLN 130 (188)
T ss_dssp TESSEEEEEEEESSSH------------HHHH-HHHHHHTTSSEEEEEEE-TTTBS-THHHHHHHHHHHHTT-SEEEEEE
T ss_pred cccccceeeccccccc------------ceee-cccceecccccceeeee-ccccc-ccccccccccccccccceEEeee
Confidence 4566789999999953 2233 34455889999977654 44444 23333455555555688999999
Q ss_pred cCCCC
Q 007054 216 KLDLM 220 (620)
Q Consensus 216 K~D~~ 220 (620)
|+|+.
T Consensus 131 K~D~~ 135 (188)
T PF00009_consen 131 KMDLI 135 (188)
T ss_dssp TCTSS
T ss_pred eccch
Confidence 99999
No 141
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.07 E-value=8.7e-10 Score=104.04 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+++|.+|+|||||+++|++..+ + .. .||.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~-~-~~-----~~t~--------------------------------------- 41 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS-V-TT-----IPTV--------------------------------------- 41 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC-c-cc-----cCCc---------------------------------------
Confidence 346999999999999999999987654 1 11 1100
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
++... . +.. ....+.++||||... .+.+...|++++|++|++++..+.. .-...
T Consensus 42 -------g~~~~--~--~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~a~~ii~v~D~t~~~-s~~~~ 95 (168)
T cd04149 42 -------GFNVE--T--VTY-KNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRD-RIDEA 95 (168)
T ss_pred -------ccceE--E--EEE-CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCchh-hHHHH
Confidence 00000 0 111 235689999999632 3455677899999998887755432 12222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCCCCCC
Q 007054 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~-~---~~~~rti~VltK~D~~~~ 222 (620)
.....++ . ..+.+.++|.||+|+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (168)
T cd04149 96 RQELHRIINDREMRDALLLVFANKQDLPDA 125 (168)
T ss_pred HHHHHHHhcCHhhcCCcEEEEEECcCCccC
Confidence 2222222 1 235799999999998653
No 142
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.07 E-value=5.3e-10 Score=109.37 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=47.5
Q ss_pred CccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH--HHHHHH
Q 007054 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD--AMKLAR 201 (620)
Q Consensus 124 ~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~--~l~l~~ 201 (620)
+++.+.....+ .++...+.|+||||... .... +..++..+|++|++++. ..++..+. ...+++
T Consensus 62 g~T~~~~~~~~-~~~~~~~~liDTpG~~~------------~~~~-~~~~~~~ad~~llVvD~-~~~~~~~~~~~~~~~~ 126 (208)
T cd04166 62 GITIDVAYRYF-STPKRKFIIADTPGHEQ------------YTRN-MVTGASTADLAILLVDA-RKGVLEQTRRHSYILS 126 (208)
T ss_pred CcCeecceeEE-ecCCceEEEEECCcHHH------------HHHH-HHHhhhhCCEEEEEEEC-CCCccHhHHHHHHHHH
Confidence 34444444333 34567899999999532 1222 34567899999776654 43332222 223333
Q ss_pred HhCCCCCceEEEeccCCCCCC
Q 007054 202 EVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 202 ~~~~~~~rti~VltK~D~~~~ 222 (620)
... ..++|+|+||+|+...
T Consensus 127 ~~~--~~~iIvviNK~D~~~~ 145 (208)
T cd04166 127 LLG--IRHVVVAVNKMDLVDY 145 (208)
T ss_pred HcC--CCcEEEEEEchhcccC
Confidence 322 1457889999999753
No 143
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.06 E-value=1.2e-09 Score=119.21 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=78.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccC-cccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.+|+|+|.+|+||||++|+|+|...+.++. ..+|....++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 389999999999999999999997655543 12332221111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC--CCeEEEEeccCC---chhc
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPAN---QDIA 192 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~--~~~iil~V~~a~---~d~~ 192 (620)
...+...+.+|||||+...... +.....+...+..++.. +|++|+ |.... .+..
T Consensus 161 -----------------~~idG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDVVLl-V~RLd~~~~D~e 219 (763)
T TIGR00993 161 -----------------GLVQGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDIVLY-VDRLDMQTRDSN 219 (763)
T ss_pred -----------------EEECCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCEEEE-EEeCCCccccHH
Confidence 0112467999999999975321 22344556666677764 776655 44332 2222
Q ss_pred chHHHHHHHHhCCC--CCceEEEeccCCCCCC
Q 007054 193 TSDAMKLAREVDPT--GERTFGVLTKLDLMDK 222 (620)
Q Consensus 193 ~~~~l~l~~~~~~~--~~rti~VltK~D~~~~ 222 (620)
...+++....+-.. -.++|+|+|+.|.+++
T Consensus 220 D~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 220 DLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 33345555444322 3789999999999964
No 144
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.06 E-value=1.6e-09 Score=101.39 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=85.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++++|||||++.+++..+.|.. ..|..+ .
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~---~---------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGV---D---------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceee---E----------------------------------------
Confidence 6999999999999999999988763221 111111 0
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l 197 (620)
+. ...+.+.+ ....+.++||||-. ....+...|+..+|+++++++..+.. +. ...++
T Consensus 37 -----~~--~~~~~~~~-~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~ 95 (161)
T cd04117 37 -----FK--MKTIEVDG-IKVRIQIWDTAGQE-------------RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWV 95 (161)
T ss_pred -----EE--EEEEEECC-EEEEEEEEeCCCcH-------------hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHH
Confidence 00 00111111 12467899999942 23456677899999998876544321 10 11222
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
...+...+...+.++|.||.|+.+......+.........+.+|+.+.+..+.++++.
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKES 153 (161)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 2233344456789999999998754321111111111223466777777766555443
No 145
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.06 E-value=7.2e-10 Score=104.02 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhC--CCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVD--PTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~--~~~~rti~Vlt 215 (620)
..+.++||||..... ......+++.+|++|++++..+.. +. ...++..+.... ..+.|+++|.|
T Consensus 47 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 47 VSLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 357899999976411 123455788899998876554321 10 011233344433 34688999999
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|+|+...
T Consensus 115 K~Dl~~~ 121 (165)
T cd04146 115 KADLLHY 121 (165)
T ss_pred CCchHHh
Confidence 9998643
No 146
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.06 E-value=1.8e-09 Score=101.73 Aligned_cols=71 Identities=14% Similarity=0.308 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHh----CCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~----~~~~~rti~Vl 214 (620)
...+.++|+||-. ..+.+...|++.+|++|++++..+.+ .-..+......+ ...+.+.++|+
T Consensus 42 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 42 KYEVCIFDLGGGA-------------NFRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CEEEEEEECCCcH-------------HHHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 3568999999942 34567788999999998877655432 122222222222 22478999999
Q ss_pred ccCCCCCCC
Q 007054 215 TKLDLMDKG 223 (620)
Q Consensus 215 tK~D~~~~~ 223 (620)
||.|+.+..
T Consensus 108 NK~Dl~~~~ 116 (167)
T cd04161 108 NKQDKKNAL 116 (167)
T ss_pred eCCCCcCCC
Confidence 999987543
No 147
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.06 E-value=9.8e-10 Score=103.72 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=44.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHh----CCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~----~~~~~rti~Vl 214 (620)
...+.++||||... ...+...|+..+|++|++++..+..- -.+.......+ ...+.++++|.
T Consensus 42 ~~~i~l~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~s~~~s-~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHK-------------LRPLWKHYYLNTQAVVFVVDSSHRDR-VSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChh-------------cchHHHHHhccCCEEEEEEeCCcHHH-HHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 35789999999643 24456778899999988776544221 11122222222 12347899999
Q ss_pred ccCCCCCC
Q 007054 215 TKLDLMDK 222 (620)
Q Consensus 215 tK~D~~~~ 222 (620)
||.|+.+.
T Consensus 108 NK~Dl~~~ 115 (169)
T cd04158 108 NKQDVAGA 115 (169)
T ss_pred eCcCcccC
Confidence 99998653
No 148
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.05 E-value=7.8e-10 Score=109.11 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=49.0
Q ss_pred ecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh-cCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEE
Q 007054 135 YSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGV 213 (620)
Q Consensus 135 ~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi-~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~V 213 (620)
.......++||||||.. .....+..... ..+|.++++| ++..+. ......++..+...+.+.++|
T Consensus 79 ~~~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D~~llVv-da~~g~-~~~d~~~l~~l~~~~ip~ivv 144 (224)
T cd04165 79 CEKSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPDYAMLVV-AANAGI-IGMTKEHLGLALALNIPVFVV 144 (224)
T ss_pred eeeCCcEEEEEECCCcH------------HHHHHHHHhhcccCCCEEEEEE-ECCCCC-cHHHHHHHHHHHHcCCCEEEE
Confidence 33445789999999953 23334443322 3688886655 555555 344455666677778899999
Q ss_pred eccCCCCCC
Q 007054 214 LTKLDLMDK 222 (620)
Q Consensus 214 ltK~D~~~~ 222 (620)
+||+|++++
T Consensus 145 vNK~D~~~~ 153 (224)
T cd04165 145 VTKIDLAPA 153 (224)
T ss_pred EECccccCH
Confidence 999999754
No 149
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.04 E-value=1.5e-09 Score=105.35 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH---HH-HHHHhCCCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MK-LAREVDPTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~---l~-l~~~~~~~~~rti~Vlt 215 (620)
..+.|+||||... ...+...|+..+|++|++++..+. ..-... +. +.......+.++|+|+|
T Consensus 47 ~~l~i~D~~G~~~-------------~~~~~~~~~~~ad~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYS-------------FPAMRKLSIQNSDAFALVYAVDDP-ESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchh-------------hhHHHHHHhhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 4678999999643 233455688999999887754432 111111 12 22222335789999999
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|+|+...
T Consensus 113 K~Dl~~~ 119 (198)
T cd04147 113 KADSLEE 119 (198)
T ss_pred ccccccc
Confidence 9998753
No 150
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.04 E-value=1.9e-09 Score=103.34 Aligned_cols=154 Identities=14% Similarity=0.198 Sum_probs=84.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++++|||||++++.+..+ +... .|+... .
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~---------~------------------------------ 36 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFE---------N------------------------------ 36 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeee---------e------------------------------
Confidence 799999999999999999998875 3221 121110 0
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch--HH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~--~~ 196 (620)
+. ..+...+.....+.|+||||.. ....+...|++.+|++|++++..+.. +..- .+
T Consensus 37 -----~~---~~i~~~~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~ 95 (187)
T cd04132 37 -----YV---TNIQGPNGKIIELALWDTAGQE-------------EYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKW 95 (187)
T ss_pred -----eE---EEEEecCCcEEEEEEEECCCch-------------hHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0011111123467899999942 23445566889999998876544321 1111 12
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCc---H-HHHHhCCccccCC-CeeEEeeCChhhhhccCCHHH
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTN---A-LDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~---~-~~~l~~~~~~l~l-g~~~v~~~s~~~~~~~~~~~~ 260 (620)
+...+... .+.|.|+|.||.|+.+.... . .+.........+. .|+.+++.++.++++.+....
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 163 (187)
T cd04132 96 FPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAI 163 (187)
T ss_pred HHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHH
Confidence 22223223 35799999999998753310 0 1111111112233 566666666666655444433
No 151
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.04 E-value=4e-09 Score=104.19 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-CCCeEEEEeccCCch-hc-chHHHHHHHHhC-CCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQD-IA-TSDAMKLAREVD-PTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~-~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~-~~~~rti~Vl 214 (620)
...+.++||||... .+. ..++. .+|++|++++..+.. +. ...++....... ..+.|+|+|.
T Consensus 49 ~~~l~i~Dt~G~~~------------~~~---~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 49 ESTLVVIDHWEQEM------------WTE---DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEEEEEEeCCCcch------------HHH---hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 35688999999641 111 23445 899998876554321 11 112223233332 2468999999
Q ss_pred ccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHHH
Q 007054 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (620)
Q Consensus 215 tK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~~ 262 (620)
||+|+........+.........+..|+.+++..+.++++.+......
T Consensus 114 NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 114 NKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred EChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 999987543211111111112234567888888877777666554433
No 152
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.03 E-value=6.4e-10 Score=107.36 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=45.6
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCc-eEEEec
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~r-ti~Vlt 215 (620)
.+...++||||||.. +.+. .+...+..+|+++++|. +..++..+ ....++.+...+.+ .|+|+|
T Consensus 62 ~~~~~i~~iDtPG~~------------~~~~-~~~~~~~~~D~~ilVvd-a~~g~~~~-~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 62 TANRHYAHVDCPGHA------------DYIK-NMITGAAQMDGAILVVS-ATDGPMPQ-TREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CCCeEEEEEECcCHH------------HHHH-HHHHHhhhCCEEEEEEE-CCCCCcHH-HHHHHHHHHHcCCCcEEEEEe
Confidence 345689999999963 2222 23455678999977655 54444333 33345555555665 789999
Q ss_pred cCCCCC
Q 007054 216 KLDLMD 221 (620)
Q Consensus 216 K~D~~~ 221 (620)
|+|++.
T Consensus 127 K~D~~~ 132 (195)
T cd01884 127 KADMVD 132 (195)
T ss_pred CCCCCC
Confidence 999975
No 153
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.02 E-value=2.3e-09 Score=121.32 Aligned_cols=121 Identities=18% Similarity=0.356 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...|.|+|+|..++|||||+++|.+..+.....+..|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq------------------------------------------ 279 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQ------------------------------------------ 279 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccc------------------------------------------
Confidence 46789999999999999999999987652111111110
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
.+....+.+. .......++|+||||. .....+...++..+|++||+|. +..+.. ..
T Consensus 280 --------~i~~~~v~~~-~~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaILVVD-A~dGv~-~Q 335 (742)
T CHL00189 280 --------KIGAYEVEFE-YKDENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAILIIA-ADDGVK-PQ 335 (742)
T ss_pred --------ccceEEEEEE-ecCCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEEEEE-CcCCCC-hh
Confidence 0000011111 1123467999999994 2345666778899999988774 443332 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
....++.+...+.|+|+|+||+|+...
T Consensus 336 T~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 336 TIEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred hHHHHHHHHhcCceEEEEEECCCcccc
Confidence 233344455567899999999999753
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.02 E-value=2.9e-09 Score=97.89 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 68 (620)
++|+++|.++||||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 589999999999999999999987 45443
No 155
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=7.5e-10 Score=102.20 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=99.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..-.||++|+||+||+||++...-..| -+... |
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~Yq-----A----------------------------------------- 53 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQ-----A----------------------------------------- 53 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-ccccc-----c-----------------------------------------
Confidence 345899999999999999999987655 11110 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCC--chhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN--QDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~--~d~~~~ 194 (620)
.-+.+|-...+. +.+. ...|.|+||.| .+..+.++-.|++++.++|++.+-.+ .-..+.
T Consensus 54 ---TIGiDFlskt~~--l~d~-~vrLQlWDTAG-------------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~ 114 (221)
T KOG0094|consen 54 ---TIGIDFLSKTMY--LEDR-TVRLQLWDTAG-------------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTS 114 (221)
T ss_pred ---eeeeEEEEEEEE--EcCc-EEEEEEEeccc-------------HHHHhhhhhhhccCCeEEEEEEeccccchHHHHH
Confidence 001122222222 2332 45789999999 47789999999999998877654333 233345
Q ss_pred HHHHHHHHhCCC-CCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHHH
Q 007054 195 DAMKLAREVDPT-GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (620)
Q Consensus 195 ~~l~l~~~~~~~-~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~~ 262 (620)
.|+.-++.-... +..+++|-||.|++++..-...--......++.-|..+.+..+.++...+..+.+.
T Consensus 115 kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~ 183 (221)
T KOG0094|consen 115 KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAA 183 (221)
T ss_pred HHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHh
Confidence 566544444333 46778899999999874322221222234555667777777776666554444433
No 156
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.01 E-value=3e-09 Score=100.54 Aligned_cols=115 Identities=21% Similarity=0.352 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-.+|+++|.+|||||||+++|.|..+ + +..|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~------~~~~t---------------------------------------- 45 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-S------HITPT---------------------------------------- 45 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-c------ccCCC----------------------------------------
Confidence 356899999999999999999999754 1 01110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc--h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~--~ 194 (620)
.++.... +.. ....+.++|+||.. ....++..+++.+++++++++..+..--. .
T Consensus 46 ------~g~~~~~----i~~-~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~ 101 (173)
T cd04155 46 ------QGFNIKT----VQS-DGFKLNVWDIGGQR-------------AIRPYWRNYFENTDCLIYVIDSADKKRLEEAG 101 (173)
T ss_pred ------CCcceEE----EEE-CCEEEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHH
Confidence 0010001 111 13578899999953 23456677889999988876654421101 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAM-KLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l-~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+ .+.+.....+.++++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 111 1222223346899999999998754
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.01 E-value=2.8e-09 Score=102.89 Aligned_cols=67 Identities=21% Similarity=0.370 Sum_probs=41.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--HHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~--~~l~l~~~~~~~~~rti~VltK 216 (620)
...++++||||... .+.. ....+..+|+++++++.. .....+ +.+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~------------~~~~-~~~~~~~~d~vi~VvD~~-~~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHAS------------LIRT-IIGGAQIIDLMLLVVDAT-KGIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHH------------HHHH-HHHHHhhCCEEEEEEECC-CCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 46889999999631 2222 224456788887766543 332222 22333322 36799999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+...
T Consensus 130 ~Dl~~~ 135 (192)
T cd01889 130 IDLIPE 135 (192)
T ss_pred cccCCH
Confidence 999853
No 158
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.01 E-value=6.8e-10 Score=110.02 Aligned_cols=155 Identities=20% Similarity=0.300 Sum_probs=91.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..+-|.+||-||||||||||||+..+----.+.++|-.| ++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P---~i------------------------------------ 235 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRP---HI------------------------------------ 235 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeecc---cc------------------------------------
Confidence 346788999999999999999998853223455677666 10
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-h-hcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-D-IATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d-~~~~ 194 (620)
| .+...+..++++-|+|||+..+..+ +..---..+.|+.++.++++|+-++. + -..+
T Consensus 236 ---G------------~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~ 294 (366)
T KOG1489|consen 236 ---G------------TVNYDDFSQITVADIPGIIEGAHMN------KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQ 294 (366)
T ss_pred ---c------------eeeccccceeEeccCcccccccccc------CcccHHHHHHHHhhceEEEEEECCCcccCCHHH
Confidence 1 0222233459999999999866532 22222334567778877665544332 1 1122
Q ss_pred HHHHHHHHhCC-----CCCceEEEeccCCCCCCCCcHHHHHhCCccccCCC-eeEEeeCChhhhhc
Q 007054 195 DAMKLAREVDP-----TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINR 254 (620)
Q Consensus 195 ~~l~l~~~~~~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~v~~~s~~~~~~ 254 (620)
....+..++.- ..++.++|+||+|+.+...+. +......++-+ .++|++.++++...
T Consensus 295 ~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 295 QLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVVPVSAKSGEGLEE 357 (366)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEEEeeeccccchHH
Confidence 22223333321 246699999999997544332 12122333333 66777777765443
No 159
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.01 E-value=2.2e-09 Score=119.75 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...|.|+++|+.++|||||+++|.+..+.....+..|.-.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i---------------------------------------- 124 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI---------------------------------------- 124 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc----------------------------------------
Confidence 3569999999999999999999998775222111111000
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
| ...+..++...++|+||||... ...+..++...+|.+||++. ++.+. ...
T Consensus 125 ----g----------~~~v~~~~~~~i~~iDTPGhe~-------------F~~~r~rga~~aDiaILVVd-a~dgv-~~q 175 (587)
T TIGR00487 125 ----G----------AYHVENEDGKMITFLDTPGHEA-------------FTSMRARGAKVTDIVVLVVA-ADDGV-MPQ 175 (587)
T ss_pred ----e----------EEEEEECCCcEEEEEECCCCcc-------------hhhHHHhhhccCCEEEEEEE-CCCCC-CHh
Confidence 0 0112222233799999999533 23445567888999988774 44333 222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
....++.....+.|+|+++||+|+..
T Consensus 176 T~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 176 TIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHHHcCCCEEEEEECccccc
Confidence 33344445556789999999999864
No 160
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.00 E-value=7.9e-09 Score=110.10 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=65.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|++||.+|+|||||+|+|++..+...+...||.-|+.-........ +. ...+..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~----------~~--------------~r~~~~ 57 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVEC----------PC--------------KELGVK 57 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCC----------ch--------------hhhhhh
Confidence 489999999999999999999998655566778888854221110000 00 000001
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a 187 (620)
....++.. ..+.....++++||||+......+ ..+.+...+.++.+|+++++|...
T Consensus 58 ~~~~~~~~-------~~~~~~~~i~i~D~aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 58 CNPRNGKC-------IDGTRFIPVELIDVAGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hccccccc-------cCCcceeeEEEEEcCCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 11000000 001112468999999998754332 234444555689999998877654
No 161
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.00 E-value=3.1e-09 Score=118.29 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|.|+|+|++++|||||||+|+|..+.....+..|+-.-.... ..+. . .
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~~~~------------~-----------------~ 52 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-PMDV------------I-----------------E 52 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-eecc------------c-----------------c
Confidence 57999999999999999999999987644333434432100000 0000 0 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
...+. . .. ...+. ...+.++|+||||.. ....+...++..+|+++|+++. +.+... ..
T Consensus 53 ~~~~~---~-~~--~~~v~-~~~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD~~IlVvD~-~~g~~~-qt 110 (590)
T TIGR00491 53 GICGD---L-LK--KFKIR-LKIPGLLFIDTPGHE-------------AFTNLRKRGGALADLAILIVDI-NEGFKP-QT 110 (590)
T ss_pred ccccc---c-cc--ccccc-cccCcEEEEECCCcH-------------hHHHHHHHHHhhCCEEEEEEEC-CcCCCH-hH
Confidence 00000 0 00 00111 123569999999953 2344556688899999886654 333322 22
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
...+..+...+.+.|+|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 2333344445789999999999974
No 162
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.00 E-value=2.3e-09 Score=120.08 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCc-eEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGER-TFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~r-ti~VltK 216 (620)
..+++||+||.- .. ......++..+|++|++|+ ++.+. .+.+.+.+++. .+.+ .|+|+||
T Consensus 50 ~~v~~iDtPGhe------------~f-~~~~~~g~~~aD~aILVVD-a~~G~~~qT~ehl~il~~---lgi~~iIVVlNK 112 (581)
T TIGR00475 50 YRLGFIDVPGHE------------KF-ISNAIAGGGGIDAALLVVD-ADEGVMTQTGEHLAVLDL---LGIPHTIVVITK 112 (581)
T ss_pred EEEEEEECCCHH------------HH-HHHHHhhhccCCEEEEEEE-CCCCCcHHHHHHHHHHHH---cCCCeEEEEEEC
Confidence 678999999931 22 3344567788999988665 44332 23334444443 3566 9999999
Q ss_pred CCCCCCCC------cHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 217 LDLMDKGT------NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 217 ~D~~~~~~------~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
+|+.+... +..+++.+........++.+++.++.++++......
T Consensus 113 ~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~ 162 (581)
T TIGR00475 113 ADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK 162 (581)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence 99986442 112222211111135677888888777766555443
No 163
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.00 E-value=2e-09 Score=97.88 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH----HHHHHhCCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM----KLAREVDPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l----~l~~~~~~~~~rti~Vl 214 (620)
...++++|+||.... ......+++..|++++++...+ +....... .........+.++++|+
T Consensus 44 ~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 44 KVKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYDVTD-RESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred EEEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 357899999997642 1222667888998877665443 32222221 13334455679999999
Q ss_pred ccCCCCCCCCcHHHH-HhCCccccCCCeeEEeeCChhhh
Q 007054 215 TKLDLMDKGTNALDV-LEGRSYRLQHPWVGIVNRSQADI 252 (620)
Q Consensus 215 tK~D~~~~~~~~~~~-l~~~~~~l~lg~~~v~~~s~~~~ 252 (620)
||+|+.......... ..........+++.+.+....++
T Consensus 110 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 110 NKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred eccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 999998654322211 11111223456666666655443
No 164
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.99 E-value=3.2e-09 Score=99.20 Aligned_cols=70 Identities=17% Similarity=0.316 Sum_probs=45.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHh-C---CCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-D---PTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~-~---~~~~rti~Vl 214 (620)
...+.++||||... ...+...|++++|++|++++..+.+ .-..+......+ . ....+.++|.
T Consensus 43 ~~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 35689999999632 3556678999999998877655432 112222222222 1 1347899999
Q ss_pred ccCCCCCC
Q 007054 215 TKLDLMDK 222 (620)
Q Consensus 215 tK~D~~~~ 222 (620)
||.|+.+.
T Consensus 109 NK~Dl~~~ 116 (159)
T cd04150 109 NKQDLPNA 116 (159)
T ss_pred ECCCCCCC
Confidence 99998653
No 165
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.99 E-value=5.2e-09 Score=98.32 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=70.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
||+++|.+++|||||++.+++..+ +... .||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~pt------------------------------------------- 31 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VPT------------------------------------------- 31 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----ccc-------------------------------------------
Confidence 689999999999999999998764 2111 110
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l 199 (620)
.++. .+ .+.. ....+.++||||-.. .+.+...|++.+|++|++++..+.. .-..+...
T Consensus 32 ---~g~~--~~--~i~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~ 89 (164)
T cd04162 32 ---TGFN--SV--AIPT-QDAIMELLEIGGSQN-------------LRKYWKRYLSGSQGLIFVVDSADSE-RLPLARQE 89 (164)
T ss_pred ---CCcc--eE--EEee-CCeEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 0010 11 1222 235789999999532 2455667899999998877654422 11112222
Q ss_pred HHHh--CCCCCceEEEeccCCCCCC
Q 007054 200 AREV--DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 200 ~~~~--~~~~~rti~VltK~D~~~~ 222 (620)
...+ ...+.++++|.||.|+...
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 2222 1247899999999998654
No 166
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.98 E-value=4.5e-09 Score=100.55 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc--hHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~--~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||+|-. ....+...|++++|+++++++..+..--. ..++..++...+...+ |+|.||+
T Consensus 49 ~~l~iwDt~G~~-------------~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~ 114 (182)
T cd04128 49 ITFSIWDLGGQR-------------EFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKY 114 (182)
T ss_pred EEEEEEeCCCch-------------hHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEch
Confidence 468899999943 23456677999999998877654432111 1344445555454445 7899999
Q ss_pred CCCC
Q 007054 218 DLMD 221 (620)
Q Consensus 218 D~~~ 221 (620)
|+..
T Consensus 115 Dl~~ 118 (182)
T cd04128 115 DLFA 118 (182)
T ss_pred hccc
Confidence 9863
No 167
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.98 E-value=1.8e-09 Score=102.07 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||... ...+...+++.+|++|++++..+.. +.. ..++...+...+ +.++|+|.||
T Consensus 46 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQED-------------YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCcc-------------cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecC
Confidence 4688999999543 1234455788999998877644321 111 112333333333 6899999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 112 ~Dl~~~ 117 (174)
T smart00174 112 LDLRED 117 (174)
T ss_pred hhhhhC
Confidence 999764
No 168
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.97 E-value=2.5e-09 Score=105.52 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||... ...+...|++.++++|++++..+..- . ...++...+...+ +.++++|.||+
T Consensus 62 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~ 127 (219)
T PLN03071 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKV 127 (219)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEch
Confidence 5788999999532 24566678999999988776554321 0 1123333333333 58999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
|+.+....... +. .....+..|+.+++.++.++++.+..+
T Consensus 128 Dl~~~~v~~~~-~~-~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 128 DVKNRQVKAKQ-VT-FHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred hhhhccCCHHH-HH-HHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 98643221111 11 011234567777777766666555443
No 169
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.97 E-value=4.5e-09 Score=99.22 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+..+|+++|++|+|||||++++++..|-|....+ |-.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKP----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCc-----------------------------------------
Confidence 4558999999999999999999998762122211 1110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.+.... +.+.+ ....+.++|++|-... ..+...|++++|+++++++..+. -.-...
T Consensus 41 -------~~~~~~--~~~~~-~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d~~~~-~s~~~~ 96 (169)
T cd01892 41 -------RYAVNT--VEVYG-QEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYDSSDP-KSFSYC 96 (169)
T ss_pred -------ceEEEE--EEECC-eEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEeCCCH-HHHHHH
Confidence 000001 11111 1245788999985431 23445678999999887654332 111122
Q ss_pred HHHHHHhC-CCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVD-PTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~-~~~~rti~VltK~D~~~~ 222 (620)
..+.+.+. ..+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 97 AEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHHhccCCCCeEEEEEEccccccc
Confidence 23344442 336899999999998654
No 170
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.96 E-value=1e-08 Score=98.12 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHh-CC---CCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-DP---TGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~-~~---~~~rti~Vl 214 (620)
...+.++||||.. ..+.+...|++.+|++|++++.++.+- -..+......+ .. ...+.++|.
T Consensus 60 ~~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~ 125 (182)
T PTZ00133 60 NLKFTMWDVGGQD-------------KLRPLWRHYYQNTNGLIFVVDSNDRER-IGDAREELERMLSEDELRDAVLLVFA 125 (182)
T ss_pred CEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence 3568999999953 245677889999999988776554321 11222222222 21 247899999
Q ss_pred ccCCCCC
Q 007054 215 TKLDLMD 221 (620)
Q Consensus 215 tK~D~~~ 221 (620)
||.|+.+
T Consensus 126 NK~Dl~~ 132 (182)
T PTZ00133 126 NKQDLPN 132 (182)
T ss_pred eCCCCCC
Confidence 9999864
No 171
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.96 E-value=4.4e-09 Score=99.93 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHh----CCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~----~~~~~rti~Vl 214 (620)
...+.++||||... ...+...|++++|++|++++.++.+- -..+......+ ...+.++++|.
T Consensus 56 ~~~l~l~D~~G~~~-------------~~~~~~~~~~~ad~ii~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~ 121 (175)
T smart00177 56 NISFTVWDVGGQDK-------------IRPLWRHYYTNTQGLIFVVDSNDRDR-IDEAREELHRMLNEDELRDAVILVFA 121 (175)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence 35788999999532 35567889999999988776554321 12222222222 12357899999
Q ss_pred ccCCCCC
Q 007054 215 TKLDLMD 221 (620)
Q Consensus 215 tK~D~~~ 221 (620)
||.|+.+
T Consensus 122 NK~Dl~~ 128 (175)
T smart00177 122 NKQDLPD 128 (175)
T ss_pred eCcCccc
Confidence 9999864
No 172
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.96 E-value=2.5e-09 Score=108.45 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
....+.||||||..+ ....+..+++..|++|++|. +..+...+ ...+++.+...+.|.++++||+
T Consensus 62 ~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ailVVD-a~~g~~~~-t~~~~~~~~~~~~p~ivviNK~ 126 (270)
T cd01886 62 KDHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAVFD-AVAGVEPQ-TETVWRQADRYNVPRIAFVNKM 126 (270)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEEEEE-CCCCCCHH-HHHHHHHHHHcCCCEEEEEECC
Confidence 356899999999653 12336778899999877664 54444333 3345555666678999999999
Q ss_pred CCCC
Q 007054 218 DLMD 221 (620)
Q Consensus 218 D~~~ 221 (620)
|+..
T Consensus 127 D~~~ 130 (270)
T cd01886 127 DRTG 130 (270)
T ss_pred CCCC
Confidence 9874
No 173
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.95 E-value=8.1e-09 Score=103.53 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=57.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHh------------CCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV------------DPTG 207 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~------------~~~~ 207 (620)
..+.|+||||... ...+...|+..+|++|++++..+.+ .-+....+..++ ....
T Consensus 48 ~~l~I~Dt~G~~~-------------~~~~~~~~~~~ad~iIlVfdv~~~~-Sf~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 48 YQLDILDTSGNHP-------------FPAMRRLSILTGDVFILVFSLDNRE-SFEEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhhcccccccccCCC
Confidence 4678999999532 2334455788999998876544322 111122222222 1236
Q ss_pred CceEEEeccCCCCCCCC-cHHHHHhCCccccCCCeeEEeeCChhhhhccCCH
Q 007054 208 ERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (620)
Q Consensus 208 ~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~ 258 (620)
.++|+|.||+|+..... ...++.+-........|+.+++.++.++++.+..
T Consensus 114 ~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~ 165 (247)
T cd04143 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165 (247)
T ss_pred CcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHH
Confidence 79999999999975322 1111111000112345777777776666554443
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.95 E-value=6e-09 Score=101.51 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++||||||. ..+...+..++...|.++++++...... .+.+.+..+.... ..++|+|+||+
T Consensus 83 ~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEch
Confidence 57899999993 1233345566678899888766543222 1223333333221 24689999999
Q ss_pred CCCCCCC--cHHHHHhCCcc---ccCCCeeEEeeCChhhhhccCC
Q 007054 218 DLMDKGT--NALDVLEGRSY---RLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 218 D~~~~~~--~~~~~l~~~~~---~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
|+.+... ...+.+..... .....++.+++.++.++++.+.
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~ 192 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLE 192 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHH
Confidence 9975321 11111111111 1133456666666665554443
No 175
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.95 E-value=9.6e-09 Score=98.78 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||||-. ....+...|++.+|++||+++..+.. +. ...++..+....+ +.+.|+|.||.
T Consensus 55 ~~l~iwDt~G~~-------------~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~ 120 (189)
T cd04121 55 VKLQLWDTSGQG-------------RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRL 120 (189)
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECc
Confidence 568899999953 34567778999999998877654321 10 1223333444333 68999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
|+........+..+......+..|+.+++..+.++++.+..+.
T Consensus 121 DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred cchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 9965321111111111122346788888888877776655444
No 176
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.94 E-value=3.5e-09 Score=100.64 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=70.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|||+.++|||||++.+.+..| |....+....
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~--------------------------------------------- 36 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFD--------------------------------------------- 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceee---------------------------------------------
Confidence 799999999999999999998765 3222111100
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~ 196 (620)
.+. ..+.+. .....+.|+||||-.. ...+...|++++|++|++++..+.+ +.. ..+
T Consensus 37 ----~~~---~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 37 ----NYA---VTVMIG-GEPYTLGLFDTAGQED-------------YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred ----eeE---EEEEEC-CEEEEEEEEECCCccc-------------hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 000 011111 1124678999999643 2334456889999998887654422 211 123
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+...+...+ ..|+|+|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 333443333 5799999999998653
No 177
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.93 E-value=1.3e-08 Score=97.25 Aligned_cols=69 Identities=17% Similarity=0.329 Sum_probs=46.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHh-C---CCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-D---PTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~-~---~~~~rti~Vlt 215 (620)
..+.|+|+||- +..+.+...|++++|++|++++..+.+ .-..+......+ . ....+.++|.|
T Consensus 61 ~~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~iI~V~D~s~~~-s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 56899999993 234667788999999998877655432 112222222222 2 13578999999
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|.|+.+.
T Consensus 127 K~Dl~~~ 133 (181)
T PLN00223 127 KQDLPNA 133 (181)
T ss_pred CCCCCCC
Confidence 9998654
No 178
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.93 E-value=1.1e-08 Score=100.76 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=68.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|||.+++|||||++.+++..| +. . ..|-.. .
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-~~-~-~~Tig~---~---------------------------------------- 35 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-KD-T-VSTVGG---A---------------------------------------- 35 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CC-C-CCccce---E----------------------------------------
Confidence 689999999999999999999876 31 1 111111 0
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch-HHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~-~~l 197 (620)
+ .........+.|+||||-.. ...+...|++.+|++|++++..+.. +..- .++
T Consensus 36 -----~-------~~~~~~~~~l~iwDt~G~e~-------------~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~ 90 (220)
T cd04126 36 -----F-------YLKQWGPYNISIWDTAGREQ-------------FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRF 90 (220)
T ss_pred -----E-------EEEEeeEEEEEEEeCCCccc-------------chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00001124689999999532 2445667899999998876544321 1111 112
Q ss_pred HHHHHhCCCCCceEEEeccCCCCC
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
...........++|+|.||+|+.+
T Consensus 91 ~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 91 LGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHhcCCCCcEEEEEECccccc
Confidence 222233334578999999999975
No 179
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.93 E-value=3e-09 Score=106.89 Aligned_cols=125 Identities=24% Similarity=0.312 Sum_probs=81.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
-|.+||-||+||||||++++..+---.++..+|-.| .|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~P---nL--------------------------------------- 198 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVP---NL--------------------------------------- 198 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccC---cc---------------------------------------
Confidence 467999999999999999999864444666777777 11
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l 197 (620)
| + +.+ .....+++-|.||++..+..|- .+-.-..+.|+++..++.+|+.+..+- ..++..
T Consensus 199 G--------v--V~~--~~~~sfv~ADIPGLIEGAs~G~------GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~ 260 (369)
T COG0536 199 G--------V--VRV--DGGESFVVADIPGLIEGASEGV------GLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQ 260 (369)
T ss_pred c--------E--EEe--cCCCcEEEecCcccccccccCC------CccHHHHHHHHhhheeEEEEecCcccCCCHHHHHH
Confidence 1 1 112 3456799999999999776542 112223456778888877776654432 112222
Q ss_pred HHHHHhC---C--CCCceEEEeccCCCCCCCC
Q 007054 198 KLAREVD---P--TGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 198 ~l~~~~~---~--~~~rti~VltK~D~~~~~~ 224 (620)
.+..++. + ..++.++|+||+|+....+
T Consensus 261 ~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e 292 (369)
T COG0536 261 TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE 292 (369)
T ss_pred HHHHHHHHhhHHhccCceEEEEeccCCCcCHH
Confidence 2333332 2 2688999999999665443
No 180
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.92 E-value=1.3e-09 Score=113.65 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=88.1
Q ss_pred ccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHH
Q 007054 30 AFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRK 109 (620)
Q Consensus 30 ~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 109 (620)
++|+.+.+-++++|||.||+||||++|-++..+. .+| .+|
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----evq-pYa---------------------------------- 199 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----EVQ-PYA---------------------------------- 199 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----ccC-Ccc----------------------------------
Confidence 5777888999999999999999999998887764 111 111
Q ss_pred HHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCC-
Q 007054 110 EIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN- 188 (620)
Q Consensus 110 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~- 188 (620)
|+...+.+.....+...+.++|||||.+.+.. ..-.++-.+-..+..-.+.+|++++-+
T Consensus 200 ---------------FTTksL~vGH~dykYlrwQViDTPGILD~plE-----drN~IEmqsITALAHLraaVLYfmDLSe 259 (620)
T KOG1490|consen 200 ---------------FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE-----DRNIIEMQIITALAHLRSAVLYFMDLSE 259 (620)
T ss_pred ---------------cccchhhhhhhhhheeeeeecCCccccCcchh-----hhhHHHHHHHHHHHHhhhhheeeeechh
Confidence 22222222233444568899999999975433 333344344445555445556666533
Q ss_pred -chhcchHHHHHHHHhCCC--CCceEEEeccCCCCCCCC
Q 007054 189 -QDIATSDAMKLAREVDPT--GERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 189 -~d~~~~~~l~l~~~~~~~--~~rti~VltK~D~~~~~~ 224 (620)
.+.+-..-+++...+.|. .+++|+|+||+|.+.++.
T Consensus 260 ~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 260 MCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred hhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc
Confidence 244445556677777764 688999999999997653
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.91 E-value=6.9e-09 Score=118.58 Aligned_cols=116 Identities=18% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...|.|+|+|+.++|||||+++|.+.++.....+..|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT------------------------------------------- 324 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGIT------------------------------------------- 324 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCcee-------------------------------------------
Confidence 4679999999999999999999988765211111011
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
...-...+.. +...++|+||||... +..+...++..+|++||+| ++..+. ...
T Consensus 325 -----------~~iga~~v~~-~~~~ItfiDTPGhe~-------------F~~m~~rga~~aDiaILVV-dAddGv-~~q 377 (787)
T PRK05306 325 -----------QHIGAYQVET-NGGKITFLDTPGHEA-------------FTAMRARGAQVTDIVVLVV-AADDGV-MPQ 377 (787)
T ss_pred -----------eeccEEEEEE-CCEEEEEEECCCCcc-------------chhHHHhhhhhCCEEEEEE-ECCCCC-CHh
Confidence 0000011111 135789999999643 2345557788899998876 444333 222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
....++.+...+.++|+|+||+|+..
T Consensus 378 T~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 378 TIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred HHHHHHHHHhcCCcEEEEEECccccc
Confidence 23344445556789999999999964
No 182
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.91 E-value=8.7e-09 Score=96.98 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=58.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch---HHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||.... ..+...|+..+|++|++++..+. .+-+ .++..++...+ ..+.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFDVTSR-VTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 56789999996431 22344577889999887654432 1111 23333444333 6899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
+|+..+...... .. ........|+.+++.++.++++.+...
T Consensus 114 ~Dl~~~~~~~~~-~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l 154 (166)
T cd00877 114 VDIKDRKVKAKQ-IT-FHRKKNLQYYEISAKSNYNFEKPFLWL 154 (166)
T ss_pred hhcccccCCHHH-HH-HHHHcCCEEEEEeCCCCCChHHHHHHH
Confidence 999743321111 10 011223457777777766665544443
No 183
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.90 E-value=1.5e-08 Score=100.30 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..-+|+|||+.++|||||++.+++..| +... .||...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi~~------------------------------------- 48 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTVFE------------------------------------- 48 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCceee-------------------------------------
Confidence 445899999999999999999998875 3221 121100
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc--c
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA--T 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~--~ 193 (620)
.+. ..+.+.+ ....+.|+||||- +....+...|+++++++||+.+..+.+ +. .
T Consensus 49 -------~~~---~~i~~~~-~~v~l~iwDTaG~-------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 49 -------NYT---AGLETEE-QRVELSLWDTSGS-------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred -------eeE---EEEEECC-EEEEEEEEeCCCc-------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 000 0111211 2346899999993 233556677999999998877654432 11 1
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
..++..++...+ +.++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 234444555444 578999999999864
No 184
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.90 E-value=1.1e-08 Score=96.77 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=67.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|++++|||||++++.+..+ |....+ |-.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~-t~~~------------------------------------------- 36 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVP-TVFE------------------------------------------- 36 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-cccc-------------------------------------------
Confidence 5799999999999999999998765 321111 1000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhcc--hH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SD 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~~--~~ 195 (620)
.+ ...+.+.+ ....+.++||||... ...+...++.++|+++++.+..+. .+.. ..
T Consensus 37 -----~~---~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~ 94 (175)
T cd01870 37 -----NY---VADIEVDG-KQVELALWDTAGQED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 94 (175)
T ss_pred -----ce---EEEEEECC-EEEEEEEEeCCCchh-------------hhhccccccCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 00111211 224688999999532 122333467889988766543322 1111 11
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
++...+...+ +.+.++|.||+|+.+.
T Consensus 95 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 120 (175)
T cd01870 95 WTPEVKHFCP-NVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHHhhCC-CCCEEEEeeChhcccC
Confidence 2233333333 6799999999998754
No 185
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.90 E-value=6.6e-09 Score=116.83 Aligned_cols=108 Identities=16% Similarity=0.209 Sum_probs=61.4
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--HHHHHHHHhCCCCCc-eEEE
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLAREVDPTGER-TFGV 213 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~--~~l~l~~~~~~~~~r-ti~V 213 (620)
++...++||||||. .+.+.++ ...+...|.++|+| +++.++..+ +.+.+++. .+.+ .|+|
T Consensus 48 ~~g~~i~~IDtPGh------------e~fi~~m-~~g~~~~D~~lLVV-da~eg~~~qT~ehl~il~~---lgi~~iIVV 110 (614)
T PRK10512 48 PDGRVLGFIDVPGH------------EKFLSNM-LAGVGGIDHALLVV-ACDDGVMAQTREHLAILQL---TGNPMLTVA 110 (614)
T ss_pred CCCcEEEEEECCCH------------HHHHHHH-HHHhhcCCEEEEEE-ECCCCCcHHHHHHHHHHHH---cCCCeEEEE
Confidence 34456899999994 2334444 45578899998766 455444332 33444433 3444 5899
Q ss_pred eccCCCCCCCC--cHHHHHhCCcccc---CCCeeEEeeCChhhhhccCCHHHH
Q 007054 214 LTKLDLMDKGT--NALDVLEGRSYRL---QHPWVGIVNRSQADINRNIDMIVA 261 (620)
Q Consensus 214 ltK~D~~~~~~--~~~~~l~~~~~~l---~lg~~~v~~~s~~~~~~~~~~~~~ 261 (620)
+||+|+.++.. ...+.+....... ...+++|++.++.+++.+...+..
T Consensus 111 lNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 111 LTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 99999986432 1111111110111 245677888888777666555543
No 186
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.90 E-value=4.6e-09 Score=106.04 Aligned_cols=98 Identities=20% Similarity=0.316 Sum_probs=62.5
Q ss_pred EEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcC
Q 007054 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTG 120 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 120 (620)
|++||.||+|||||+|+|+|.+.-+.+...||+-|..-...- +.. . + +.++.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v-~d~-------------r---~-----------~~l~~ 52 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPV-PDE-------------R---L-----------DKLAE 52 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEe-ccc-------------h---h-----------hhHHH
Confidence 589999999999999999999875556678888884432211 000 0 0 00000
Q ss_pred CCCCccCccEEEEEecCC---CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEec
Q 007054 121 KTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS 185 (620)
Q Consensus 121 ~~~~~s~~~i~l~i~~~~---~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~ 185 (620)
.+.|. ...+.+||+||+...... .+.+.+.....++++|+++++|.
T Consensus 53 -------------~~~~~k~~~~~i~lvD~pGl~~~a~~------~~glg~~fL~~i~~~D~li~VV~ 101 (274)
T cd01900 53 -------------IVKPKKIVPATIEFVDIAGLVKGASK------GEGLGNKFLSHIREVDAIAHVVR 101 (274)
T ss_pred -------------HhCCceeeeeEEEEEECCCcCCCCch------hhHHHHHHHHHHHhCCEEEEEEe
Confidence 01110 136899999999975432 13344556677889999988764
No 187
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.89 E-value=6.9e-09 Score=98.24 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||.... ..+...|++.+|++|++.+..+.. +.. ..++...+... .+.++++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 46789999996331 223345788999998877544322 211 12333333322 35899999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 998753
No 188
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.89 E-value=2.2e-08 Score=97.53 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=46.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC-CeEEEEeccCCchhcchHHHHH----HH--HhCCCCCceE
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP-NSVILAISPANQDIATSDAMKL----AR--EVDPTGERTF 211 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~-~~iil~V~~a~~d~~~~~~l~l----~~--~~~~~~~rti 211 (620)
...+.|||+||..+ .+.+...|++.. +++|++++++...-...+.... .. .....+.|++
T Consensus 47 ~~~~~l~D~pG~~~-------------~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvl 113 (203)
T cd04105 47 GKKFRLVDVPGHPK-------------LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVL 113 (203)
T ss_pred CceEEEEECCCCHH-------------HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEE
Confidence 35689999999543 356667788888 9998887766531111111111 11 1223478999
Q ss_pred EEeccCCCCCCC
Q 007054 212 GVLTKLDLMDKG 223 (620)
Q Consensus 212 ~VltK~D~~~~~ 223 (620)
+|+||.|+....
T Consensus 114 iv~NK~Dl~~a~ 125 (203)
T cd04105 114 IACNKQDLFTAK 125 (203)
T ss_pred EEecchhhcccC
Confidence 999999987543
No 189
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.89 E-value=7.2e-09 Score=103.24 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=47.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
....+.++||||..+. ...+..+++.+|++|++++. ..+... ....+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVvd~-~~g~~~-~~~~~~~~~~~~~~P~iivvNK~ 126 (237)
T cd04168 62 EDTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVISA-VEGVQA-QTRILWRLLRKLNIPTIIFVNKI 126 (237)
T ss_pred CCEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEEeC-CCCCCH-HHHHHHHHHHHcCCCEEEEEECc
Confidence 3468999999997541 33456788899999886654 334422 22334444445678999999999
Q ss_pred CCCC
Q 007054 218 DLMD 221 (620)
Q Consensus 218 D~~~ 221 (620)
|+..
T Consensus 127 D~~~ 130 (237)
T cd04168 127 DRAG 130 (237)
T ss_pred cccC
Confidence 9874
No 190
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.88 E-value=7.5e-09 Score=99.63 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=44.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhcch--HHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIATS--DAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~~~--~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.|+||||-.. ...+...|+..++++|++.+..+. .+.+. .++..++...+ +.++++|.||
T Consensus 48 ~~l~i~Dt~G~~~-------------~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEE-------------FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChh-------------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 4788999999532 133444578899999887654332 22221 23444444333 6899999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (189)
T cd04134 114 CDLREA 119 (189)
T ss_pred hhhccC
Confidence 999754
No 191
>PTZ00258 GTP-binding protein; Provisional
Probab=98.87 E-value=8.6e-09 Score=108.63 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-.+|++||.||+|||||+|+|+|..........||+-|..-.+...+.. .+
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r----------------------------~~ 71 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDER----------------------------FD 71 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccch----------------------------hh
Confidence 45699999999999999999999998755667788888854332111000 00
Q ss_pred hhcCCCCCccCccEEEEEecC---CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 007054 117 RVTGKTKQISPIPIHLSIYSP---NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~---~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~ 186 (620)
.+.. +..| ....+.+|||||+...... .+.+.+.....++++|+++++|..
T Consensus 72 ~l~~-------------~~~~~~~~~aqi~lvDtpGLv~ga~~------g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 72 WLCK-------------HFKPKSIVPAQLDITDIAGLVKGASE------GEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred HHHH-------------HcCCcccCCCCeEEEECCCcCcCCcc------hhHHHHHHHHHHHHCCEEEEEEeC
Confidence 0000 1111 1236899999999975432 133445566778999999887654
No 192
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.86 E-value=1.5e-08 Score=96.86 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+++|+.++|||||++.+.+..| +.... .|-..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------------------------------------- 40 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------------------------------------- 40 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee-------------------------------------------
Confidence 4899999999999999999998875 32221 11110
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~ 195 (620)
.+. ..+.+ ......+.|+||+|- +....+...|++++|++||+.+..+.+ +.+ ..
T Consensus 41 -----~~~---~~~~~-~~~~~~l~iwDtaG~-------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~ 98 (182)
T cd04172 41 -----NYT---ASFEI-DTQRIELSLWDTSGS-------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK 98 (182)
T ss_pred -----eeE---EEEEE-CCEEEEEEEEECCCc-------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 000 01111 112356889999994 233556677899999998877654421 211 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
++..++...+ ..+.|+|.||.|+.+
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 4444555555 578999999999864
No 193
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.86 E-value=2.4e-08 Score=101.20 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEecc
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
+....+.||||||..+ ....+..+++.+|++|+++.+ ..++..+ ...+.+.....+.|.++++||
T Consensus 68 ~~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~IlVvda-~~g~~~~-~~~i~~~~~~~~~P~iivvNK 132 (267)
T cd04169 68 YRDCVINLLDTPGHED-------------FSEDTYRTLTAVDSAVMVIDA-AKGVEPQ-TRKLFEVCRLRGIPIITFINK 132 (267)
T ss_pred eCCEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEEEC-CCCccHH-HHHHHHHHHhcCCCEEEEEEC
Confidence 3456899999999643 123456778899999886654 3343222 223444455567899999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|....
T Consensus 133 ~D~~~a 138 (267)
T cd04169 133 LDREGR 138 (267)
T ss_pred CccCCC
Confidence 997654
No 194
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.84 E-value=3e-08 Score=94.10 Aligned_cols=68 Identities=24% Similarity=0.233 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.|+||||-.. ...+...|++.+|++|++++..+.+ +.. ..++...+...+ ..++|+|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCchh-------------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 4678999999432 2345566889999998877655432 111 123333444333 5899999999
Q ss_pred CCCCC
Q 007054 217 LDLMD 221 (620)
Q Consensus 217 ~D~~~ 221 (620)
+|+.+
T Consensus 115 ~Dl~~ 119 (174)
T cd01871 115 LDLRD 119 (174)
T ss_pred hhhcc
Confidence 99864
No 195
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.84 E-value=2.1e-08 Score=94.85 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=41.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||-... ..+...++...+++|++++..+.. +.. ..+....+.. ..+.+.++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK 113 (174)
T cd04135 48 YLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQ 113 (174)
T ss_pred EEEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEc
Confidence 35789999995431 122334678889888876543321 111 1223333433 346899999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (174)
T cd04135 114 IDLRDD 119 (174)
T ss_pred hhhhcC
Confidence 998654
No 196
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.84 E-value=1.8e-08 Score=96.05 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=72.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+++|+.++|||||++.+.+..| |... .||...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceEE----------------------------------------
Confidence 699999999999999999998865 4322 121100
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~ 196 (620)
.++ ..+.+.+ ....+.|+||||-. ....+...|++.+|++|++.+..+.+ +.. ..+
T Consensus 37 ----~~~---~~~~~~~-~~~~l~iwDt~G~~-------------~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 37 ----NYT---ASFEIDE-QRIELSLWDTSGSP-------------YYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred ----EEE---EEEEECC-EEEEEEEEECCCch-------------hhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 000 0111221 23578899999942 22345556889999998876554321 211 234
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
...++...+ ..+.|+|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 444555555 578999999999864
No 197
>CHL00071 tufA elongation factor Tu
Probab=98.83 E-value=9.5e-09 Score=110.85 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCc-eEEEec
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~r-ti~Vlt 215 (620)
.+...++||||||.. +.+..+ ...+..+|+++|+|+ +..++..+ ....+..+...+.+ .|+|+|
T Consensus 72 ~~~~~~~~iDtPGh~------------~~~~~~-~~~~~~~D~~ilVvd-a~~g~~~q-t~~~~~~~~~~g~~~iIvvvN 136 (409)
T CHL00071 72 TENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVS-AADGPMPQ-TKEHILLAKQVGVPNIVVFLN 136 (409)
T ss_pred cCCeEEEEEECCChH------------HHHHHH-HHHHHhCCEEEEEEE-CCCCCcHH-HHHHHHHHHHcCCCEEEEEEE
Confidence 345678999999942 344444 344678999877654 54454333 33344555555677 778999
Q ss_pred cCCCCCCC
Q 007054 216 KLDLMDKG 223 (620)
Q Consensus 216 K~D~~~~~ 223 (620)
|+|+.+..
T Consensus 137 K~D~~~~~ 144 (409)
T CHL00071 137 KEDQVDDE 144 (409)
T ss_pred ccCCCCHH
Confidence 99998643
No 198
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.83 E-value=1.5e-08 Score=105.60 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=64.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
++|++||.||+|||||+|+|+|.+........||+-|..-.+.-.... . +.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r-~---------------------------~~l 54 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPR-L---------------------------DKL 54 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEecccc-c---------------------------hhh
Confidence 589999999999999999999998544455788888843221111000 0 000
Q ss_pred cCCCCCccCccEEEEEecCC---CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 007054 119 TGKTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~---~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~ 186 (620)
. +++.|. ...+.+||+||+...... .+.+.+-....++++|+++++|..
T Consensus 55 ~-------------~~~~p~~~~~a~i~lvD~pGL~~~a~~------g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 55 A-------------EIVKPKKIVPATIEFVDIAGLVKGASK------GEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred H-------------HhcCCccccCceEEEEECCCCCCCCCh------HHHHHHHHHHHHHhCCEEEEEEeC
Confidence 0 011111 135899999999974432 234455666778899999887653
No 199
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.9e-08 Score=94.75 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=102.9
Q ss_pred cCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
+..+-.|++||+.++|||+++-.+....|- +.+...+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~-------~~~~sTi------------------------------------ 45 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFN-------TSFISTI------------------------------------ 45 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCc-------CCccceE------------------------------------
Confidence 457789999999999999999999987661 1111000
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhc-
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA- 192 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~- 192 (620)
++.-..-.+.+.+ ....|.+|||.|= +..+.++.+|++.+..|+|+++-.+. .+.
T Consensus 46 ---------GIDFk~kti~l~g-~~i~lQiWDtaGQ-------------erf~ti~~sYyrgA~gi~LvyDitne~Sfen 102 (207)
T KOG0078|consen 46 ---------GIDFKIKTIELDG-KKIKLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVYDITNEKSFEN 102 (207)
T ss_pred ---------EEEEEEEEEEeCC-eEEEEEEEEcccc-------------hhHHHHHHHHHhhcCeeEEEEEccchHHHHH
Confidence 0111111111222 2357889999993 56689999999999999998765542 111
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
...|++..++..+.+.+.++|-||+|+.++..-..+-.+.....++..|+.+++..+.++.+.+.
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 22366777777777899999999999987543222222222345567788888877766654333
No 200
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.82 E-value=3.3e-08 Score=110.61 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
+.++|+||||... ...+...++..+|++||+++ +..++..+ ....+..+...+.++++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~-------------f~~~~~~~~~~aD~~IlVvD-a~~g~~~q-t~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEA-------------FTNLRKRGGALADIAILVVD-INEGFQPQ-TIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHH-------------HHHHHHHhHhhCCEEEEEEE-CCCCCCHh-HHHHHHHHHHcCCCEEEEEECcCC
Confidence 4589999999532 23445567788999988665 44333222 222333344457899999999998
Q ss_pred C
Q 007054 220 M 220 (620)
Q Consensus 220 ~ 220 (620)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 201
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.82 E-value=7.5e-09 Score=105.33 Aligned_cols=139 Identities=22% Similarity=0.363 Sum_probs=76.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
.|.|||..|+|||||+|+|++..+.+......+... ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~------~~------------------------------------ 43 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA------SI------------------------------------ 43 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc------cc------------------------------------
Confidence 799999999999999999999987554311110000 00
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEEec
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILAIS 185 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~-------------~~~iil~V~ 185 (620)
..+..+......+. ......+|++|||||+.+.-.. ...+.+...+++--..|+.+ -|+++.++.
T Consensus 44 ~~~~~i~~~~~~l~-e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 44 SRTLEIEERTVELE-ENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp -SCEEEEEEEEEEE-ETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred ccccceeeEEEEec-cCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 00001111111111 1111247999999999864321 11223444455544555432 367777777
Q ss_pred cCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 186 PANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 186 ~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
|....+ ....+..++.+... .++|-|+.|+|.+.+.
T Consensus 123 pt~~~L-~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 123 PTGHGL-KPLDIEFMKRLSKR-VNVIPVIAKADTLTPE 158 (281)
T ss_dssp TTSSSS--HHHHHHHHHHTTT-SEEEEEESTGGGS-HH
T ss_pred CCCccc-hHHHHHHHHHhccc-ccEEeEEecccccCHH
Confidence 766666 45566788888874 7899999999999754
No 202
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.81 E-value=2.4e-08 Score=93.14 Aligned_cols=150 Identities=17% Similarity=0.279 Sum_probs=89.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|||+.++|||||++.+.+..+ |..... |... ..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~-t~~~-~~----------------------------------------- 36 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIP-TIGI-DS----------------------------------------- 36 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSET-TSSE-EE-----------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccc-cccc-cc-----------------------------------------
Confidence 589999999999999999998875 322221 2100 00
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-h-cchHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAM 197 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~-~~~~~l 197 (620)
....+.+. .....+.|+|+||-.. ...+...++++.|++|++.+..+.. + ....++
T Consensus 37 --------~~~~~~~~-~~~~~l~i~D~~g~~~-------------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 37 --------YSKEVSID-GKPVNLEIWDTSGQER-------------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWL 94 (162)
T ss_dssp --------EEEEEEET-TEEEEEEEEEETTSGG-------------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH
T ss_pred --------cccccccc-cccccccccccccccc-------------cccccccccccccccccccccccccccccccccc
Confidence 00011111 2234688999999432 1344566788999998876543321 1 112445
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
.......+...++++|.||.|+.+...-..+.........+.+|+.+....+.++.+.
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHH
Confidence 5566666656899999999998863321111111112344578888887776665543
No 203
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.81 E-value=2.6e-08 Score=101.48 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
+...+++|||||..+ ....+..++..+|++++++.+. .+... ....+.+.+...+.+.++|+||+
T Consensus 62 ~~~~i~liDtPG~~~-------------f~~~~~~~l~~aD~~i~Vvd~~-~g~~~-~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 62 KGHKINLIDTPGYAD-------------FVGETRAALRAADAALVVVSAQ-SGVEV-GTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred CCEEEEEEECcCHHH-------------HHHHHHHHHHHCCEEEEEEeCC-CCCCH-HHHHHHHHHHHcCCCEEEEEECC
Confidence 446899999999643 2344567788999997766543 33322 22334455556678999999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|....
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 98754
No 204
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.81 E-value=1e-07 Score=92.47 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=46.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHh--------------
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREV-------------- 203 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~-------------- 203 (620)
..+.|+||+|-. ....+...|++++|++|++.+-.+.+- .-..|+..+...
T Consensus 54 ~~l~IwDtaG~e-------------~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 54 FFVELWDVGGSE-------------SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEEecCCch-------------hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 357899999942 346677789999999988776544321 012333333332
Q ss_pred -----CCCCCceEEEeccCCCCCC
Q 007054 204 -----DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 204 -----~~~~~rti~VltK~D~~~~ 222 (620)
.+...|+|+|.||.|+.++
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccCCCCceEEEEEECccchhh
Confidence 1235789999999999764
No 205
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.80 E-value=2.7e-08 Score=94.52 Aligned_cols=115 Identities=25% Similarity=0.254 Sum_probs=73.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|+.++|||||+..++...| +....+ |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 699999999999999999998765 322211 1111
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhcc--hHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~~--~~~ 196 (620)
.+. ..+.+.+ ....+.|+||+|-.. ...+...|++.++++||+.+-.+. .+.+ ..+
T Consensus 37 ----~~~---~~~~~~~-~~v~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 37 ----NFS---ANVSVDG-NTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred ----eeE---EEEEECC-EEEEEEEEECCCCcc-------------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 010 1112222 235789999999533 244556689999999887654432 1212 234
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+..++...+ ..++|+|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 444554444 5899999999999754
No 206
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.80 E-value=3.4e-08 Score=110.88 Aligned_cols=132 Identities=19% Similarity=0.291 Sum_probs=74.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
...|+++|+.++|||||+++|+... +..++.. + +..+.|.... ++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~----~-----------------~~~~~D~~~~--------Er 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISERE----M-----------------REQVLDSMDL--------ER 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccc----c-----------------cccccCCChH--------HH
Confidence 4589999999999999999998753 2222110 0 0001111000 11
Q ss_pred hcCCCCCccCccEEEEEe--cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 118 VTGKTKQISPIPIHLSIY--SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~--~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
..| ..+....+.+... +.....+.||||||..+ ....+..|+..+|++||+++ ++.+...+.
T Consensus 48 erG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-------------F~~~v~~~l~~aD~aILVvD-at~g~~~qt 111 (595)
T TIGR01393 48 ERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLVD-AAQGIEAQT 111 (595)
T ss_pred hcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEec-CCCCCCHhH
Confidence 112 2233333443332 12235689999999753 24456778999999987665 444432332
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
...+ ......+.+.|+|+||+|+..
T Consensus 112 ~~~~-~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 112 LANV-YLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHH-HHHHHcCCCEEEEEECcCCCc
Confidence 2111 112224678999999999864
No 207
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.80 E-value=2.8e-08 Score=97.78 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...+.||||||..+ ....+..+++.+|+++++|+ +..+. ......+++.....+.+.|+|+||+|
T Consensus 72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~ilVvD-~~~g~-~~~t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALVVVD-AVEGV-CVQTETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEEEEE-CCCCC-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 35688999999754 23456788899999988665 44444 22334455555556789999999999
Q ss_pred CC
Q 007054 219 LM 220 (620)
Q Consensus 219 ~~ 220 (620)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 208
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.80 E-value=4.4e-08 Score=94.46 Aligned_cols=116 Identities=23% Similarity=0.259 Sum_probs=71.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+++|+.++|||||+..++...| |... .||.-.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~--------------------------------------- 38 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD--------------------------------------- 38 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe---------------------------------------
Confidence 3899999999999999999998765 3221 121100
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch--H
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--D 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~--~ 195 (620)
.+. ..+.+ +.....+.|+||||- +..+.+...|++++|++|++.+..+.+ +.+- .
T Consensus 39 -----~~~---~~~~~-~~~~~~l~i~Dt~G~-------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~ 96 (191)
T cd01875 39 -----NYS---AQTAV-DGRTVSLNLWDTAGQ-------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHK 96 (191)
T ss_pred -----eeE---EEEEE-CCEEEEEEEEECCCc-------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 000 01112 122356889999994 234566778999999998876544332 1111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+....+...+ +.++++|.||.|+.+.
T Consensus 97 w~~~i~~~~~-~~piilvgNK~DL~~~ 122 (191)
T cd01875 97 WHPEVCHHCP-NVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHHhhCC-CCCEEEEEeChhhhcC
Confidence 2222333333 6899999999998653
No 209
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.79 E-value=3.3e-08 Score=97.04 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
..+.++||||..+ ....+..++..+|+++++++... .. ......+.+.....+.+.++|+||+|+
T Consensus 71 ~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~llVvD~~~-~~-~~~~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVN-------------FMDEVAAALRLSDGVVLVVDVVE-GV-TSNTERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcc-------------hHHHHHHHHHhCCEEEEEEECCC-CC-CHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 5689999999753 13446678889999988776543 32 122223344444456899999999998
Q ss_pred C
Q 007054 220 M 220 (620)
Q Consensus 220 ~ 220 (620)
+
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 7
No 210
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.77 E-value=2.9e-08 Score=96.30 Aligned_cols=107 Identities=10% Similarity=0.107 Sum_probs=65.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~~~~~rti~VltK 216 (620)
...+.|+||||-. ....+...|++.++++|+|++..+.. +. ...++..++...+ +.+.|+|.||
T Consensus 43 ~~~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~piilvgNK 108 (200)
T smart00176 43 PIRFNVWDTAGQE-------------KFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNK 108 (200)
T ss_pred EEEEEEEECCCch-------------hhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 3578899999953 34566778999999998876544321 10 1123443444433 6899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHH
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~ 261 (620)
+|+....... +.+. .....+..|+.+++.++.++.+.+..+..
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9986432211 1111 11123466788888877777666555543
No 211
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.76 E-value=3.2e-08 Score=107.58 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=46.4
Q ss_pred ccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhcc--hHHHHHHH
Q 007054 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SDAMKLAR 201 (620)
Q Consensus 125 ~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~~--~~~l~l~~ 201 (620)
++.+.....+. .+...++|+||||..+ ...++ ...+..+|++|++++.... ++.. ...+.+++
T Consensus 70 ~T~d~~~~~~~-~~~~~i~liDtpG~~~------------~~~~~-~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~ 135 (425)
T PRK12317 70 VTIDLAHKKFE-TDKYYFTIVDCPGHRD------------FVKNM-ITGASQADAAVLVVAADDAGGVMPQTREHVFLAR 135 (425)
T ss_pred ccceeeeEEEe-cCCeEEEEEECCCccc------------chhhH-hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH
Confidence 44444443333 3456899999999532 11222 2346789999886654321 3322 23333444
Q ss_pred HhCCCCCceEEEeccCCCCC
Q 007054 202 EVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 202 ~~~~~~~rti~VltK~D~~~ 221 (620)
... ..+.++|+||+|+.+
T Consensus 136 ~~~--~~~iivviNK~Dl~~ 153 (425)
T PRK12317 136 TLG--INQLIVAINKMDAVN 153 (425)
T ss_pred HcC--CCeEEEEEEcccccc
Confidence 332 146899999999975
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.75 E-value=1.4e-08 Score=100.07 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=47.5
Q ss_pred CccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc------hh--cchH
Q 007054 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ------DI--ATSD 195 (620)
Q Consensus 124 ~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~------d~--~~~~ 195 (620)
+++.+.....+. .....++++||||..+ .. ..+..++..+|++|++|+.... +. .+..
T Consensus 62 g~T~d~~~~~~~-~~~~~i~liDtpG~~~------------~~-~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~ 127 (219)
T cd01883 62 GVTIDVGLAKFE-TEKYRFTILDAPGHRD------------FV-PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE 127 (219)
T ss_pred ccCeecceEEEe-eCCeEEEEEECCChHH------------HH-HHHHHHhhhCCEEEEEEECCCCccccccccccchHH
Confidence 344444443333 3457899999999632 12 2234567789999887665432 12 1122
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
.+.++.... ..++|+|+||+|+..
T Consensus 128 ~~~~~~~~~--~~~iiivvNK~Dl~~ 151 (219)
T cd01883 128 HALLARTLG--VKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHcC--CCeEEEEEEcccccc
Confidence 223333221 267899999999984
No 213
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.74 E-value=8.8e-08 Score=94.33 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=71.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|||+.++|||||++.+++..| |....+ |-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p-Ti~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVP-TVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCC-cccc--------------------------------------------
Confidence 699999999999999999998775 432211 1111
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~ 196 (620)
.+ ...+.+. .....|.|+||||-. ....+...|++.+|++|++++..+.+ +.. ..+
T Consensus 37 ----~~---~~~~~~~-~~~v~L~iwDt~G~e-------------~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w 95 (222)
T cd04173 37 ----NY---TASFEID-KRRIELNMWDTSGSS-------------YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95 (222)
T ss_pred ----ce---EEEEEEC-CEEEEEEEEeCCCcH-------------HHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111221 223578899999942 23445566889999998877655432 111 112
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
....+...+ +.++|+|.||+|+.+.
T Consensus 96 ~~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCC-CCCEEEEEECcccccc
Confidence 223333333 5799999999999753
No 214
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.8e-08 Score=90.80 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
+.-+..|+|+|+.|+|||.|+-.+.+-.| |-..
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~---------------------------------------------- 38 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTF-TESY---------------------------------------------- 38 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCc-chhh----------------------------------------------
Confidence 34678999999999999999999998876 2111
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hh-c
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DI-A 192 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~-~ 192 (620)
+.+-++.-....+++.+.. ..|.|+||.| .+.++.++.+|.+++|.||++.+-... .+ .
T Consensus 39 -----~sTIGVDf~~rt~e~~gk~-iKlQIWDTAG-------------QERFrtit~syYR~ahGii~vyDiT~~~SF~~ 99 (205)
T KOG0084|consen 39 -----ISTIGVDFKIRTVELDGKT-IKLQIWDTAG-------------QERFRTITSSYYRGAHGIIFVYDITKQESFNN 99 (205)
T ss_pred -----cceeeeEEEEEEeeecceE-EEEEeeeccc-------------cHHHhhhhHhhccCCCeEEEEEEcccHHHhhh
Confidence 0111122222233344433 3789999999 266789999999999999887543221 11 1
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCC-eeEEeeCChhhhh
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADIN 253 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~v~~~s~~~~~ 253 (620)
-..|+.-.+.......+.++|-||+|+.+...-..+..+.-...++.+ |...++.++.+++
T Consensus 100 v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 100 VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 123444444455556789999999999875431111111112233444 5555555444433
No 215
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.73 E-value=2.4e-08 Score=99.67 Aligned_cols=87 Identities=26% Similarity=0.376 Sum_probs=61.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-+|++||.||+|||||||+|+|.+--+-+..++|.-| +
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~------------------------------------------V 101 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP------------------------------------------V 101 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc------------------------------------------c
Confidence 3999999999999999999999875444555555443 0
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~ 186 (620)
.| +...++..+.|+|+||++..+..|... -..+.+.++++|.||++++.
T Consensus 102 PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIiiVld~ 150 (365)
T COG1163 102 PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIIIVLDV 150 (365)
T ss_pred cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEEEEec
Confidence 12 333456789999999999876654211 13345677899999876543
No 216
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.72 E-value=1.1e-07 Score=106.73 Aligned_cols=133 Identities=19% Similarity=0.279 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
....|+++|+.++|||||+++|+... |..++.. + +..+.|.... +
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~----~-----------------~~~~lD~~~~--------E 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSERE----M-----------------KAQVLDSMDL--------E 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCcccc----c-----------------ccccccCchH--------H
Confidence 45689999999999999999998642 1111110 0 0011111110 1
Q ss_pred hhcCCCCCccCccEEEEEecCC--CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
+..| ..+....+.+....++ ...+.||||||..+ ....+..++..+|++||+|+. ..+...+
T Consensus 51 rerG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d-------------F~~~v~~sl~~aD~aILVVDa-s~gv~~q 114 (600)
T PRK05433 51 RERG--ITIKAQAVRLNYKAKDGETYILNLIDTPGHVD-------------FSYEVSRSLAACEGALLVVDA-SQGVEAQ 114 (600)
T ss_pred hhcC--CcccccEEEEEEEccCCCcEEEEEEECCCcHH-------------HHHHHHHHHHHCCEEEEEEEC-CCCCCHH
Confidence 1112 2233334444332212 34689999999754 234466788899999876654 4443333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
.. .....+...+.+.|+|+||+|+..
T Consensus 115 t~-~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 115 TL-ANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred HH-HHHHHHHHCCCCEEEEEECCCCCc
Confidence 22 222222234678999999999864
No 217
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.72 E-value=1.3e-07 Score=92.91 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=80.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcc--cccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
-+|+|+|..|+|||||++++.+..+ +.+..+ .+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 4899999999999999999999875 322221 111221000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc---hhcc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIAT 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~---d~~~ 193 (620)
........+.++||+|. +.++.+...|...++.++++++.... +-..
T Consensus 48 -----------------~~~~~~~~~~~~Dt~gq-------------~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 48 -----------------EPYRRNIKLQLWDTAGQ-------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred -----------------EeCCCEEEEEeecCCCH-------------HHHHHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 01111345889999995 44567888999999999888766541 2223
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCCCc
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN 225 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~ 225 (620)
..+...++...+...+++.|.||+|+......
T Consensus 98 ~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred HHHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 44455556666567899999999999976543
No 218
>PLN03127 Elongation factor Tu; Provisional
Probab=98.71 E-value=4.2e-08 Score=106.44 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=74.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
..|+++|..++|||||+++|+|... ..+.. .... |.. .|.. . .+
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~--~~~~--------------~~~---------~D~~--~------~E-- 105 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLA-EEGKA--KAVA--------------FDE---------IDKA--P------EE-- 105 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc--ccee--------------ecc---------ccCC--h------hH--
Confidence 4799999999999999999986421 11110 0000 000 0000 0 01
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
...+++.+........ +...++||||||.. +.+.+++.. +..+|+++|+|+ ++.++..+ ...
T Consensus 106 --~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~~g-~~~aD~allVVd-a~~g~~~q-t~e 167 (447)
T PLN03127 106 --KARGITIATAHVEYET-AKRHYAHVDCPGHA------------DYVKNMITG-AAQMDGGILVVS-APDGPMPQ-TKE 167 (447)
T ss_pred --hhcCceeeeeEEEEcC-CCeEEEEEECCCcc------------chHHHHHHH-HhhCCEEEEEEE-CCCCCchh-HHH
Confidence 1133444444444333 44679999999974 234444443 346998877654 55554333 334
Q ss_pred HHHHhCCCCCc-eEEEeccCCCCCC
Q 007054 199 LAREVDPTGER-TFGVLTKLDLMDK 222 (620)
Q Consensus 199 l~~~~~~~~~r-ti~VltK~D~~~~ 222 (620)
.+..+...+.+ .|+|+||+|+++.
T Consensus 168 ~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 168 HILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHcCCCeEEEEEEeeccCCH
Confidence 45555555677 5789999999853
No 219
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.71 E-value=4e-08 Score=95.99 Aligned_cols=128 Identities=21% Similarity=0.274 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...|+++++|..|+|||||||.++..+.. ...+-. .|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~-~~t~k~--K~---------------------------------------- 170 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI-ADTSKS--KN---------------------------------------- 170 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhh-hhhcCC--CC----------------------------------------
Confidence 46689999999999999999999987641 111000 00
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeE--EEEeccCCchhcc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSV--ILAISPANQDIAT 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~i--il~V~~a~~d~~~ 193 (620)
|.+.. +. +......+++||+||+.....+ ....+...++++.|+.+-+.+ +++.+++...+..
T Consensus 171 ----g~Tq~-------in-~f~v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~ 235 (320)
T KOG2486|consen 171 ----GKTQA-------IN-HFHVGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQP 235 (320)
T ss_pred ----cccee-------ee-eeeccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCC
Confidence 11111 00 1223468999999996653222 223456678889998664332 2334556666644
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.|. ..+..+...+.+...|+||||....
T Consensus 236 ~D~-~~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 236 TDN-PEIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred CCh-HHHHHHhhcCCCeEEeeehhhhhhh
Confidence 444 4777788889999999999998754
No 220
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.70 E-value=1.4e-07 Score=97.89 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=84.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
.|+|||+-++|||||+|+++|.-++|.=++.--+ ....++......
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k----------------------------------~Ra~DELpqs~~ 64 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDK----------------------------------ERAQDELPQSAA 64 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHH----------------------------------hHHHhccCcCCC
Confidence 8999999999999999999999766632210000 000000000001
Q ss_pred C-----CC-CCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHH----------------HHHHHHHHHhhc-C
Q 007054 120 G-----KT-KQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV----------------EDIESMVRSYVE-K 176 (620)
Q Consensus 120 g-----~~-~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~----------------~~~~~~~~~yi~-~ 176 (620)
| +. +-+....+.+.....-...+.||||+|+.....-|.-+... +..+-=+++-+. +
T Consensus 65 GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dh 144 (492)
T TIGR02836 65 GKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEH 144 (492)
T ss_pred CCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhc
Confidence 1 00 11222344444333333578999999998754433322111 111112566677 6
Q ss_pred CCeEEEEeccCC------chhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 177 PNSVILAISPAN------QDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 177 ~~~iil~V~~a~------~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
++..|+++++++ .+. .....++..++...+.|.|+|+||.|-..+.
T Consensus 145 stIgivVtTDgsi~dI~Re~y-~~aEe~~i~eLk~~~kPfiivlN~~dp~~~e 196 (492)
T TIGR02836 145 STIGVVVTTDGTITDIPREDY-VEAEERVIEELKELNKPFIILLNSTHPYHPE 196 (492)
T ss_pred CcEEEEEEcCCCccccccccc-hHHHHHHHHHHHhcCCCEEEEEECcCCCCch
Confidence 776666664653 122 2234567888888899999999999955433
No 221
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.70 E-value=2.2e-07 Score=101.84 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=46.2
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc--hHHHHHHHHhCCCCCceEEE
Q 007054 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGV 213 (620)
Q Consensus 136 ~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~--~~~l~l~~~~~~~~~rti~V 213 (620)
..+...++||||||.. +...+++.. +..+|+++|+|+ ++.++.. .+.+.++..+.. .+.|+|
T Consensus 103 ~~~~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD~allVVD-a~~G~~~qt~~~~~l~~~lg~--~~iIvv 166 (474)
T PRK05124 103 STEKRKFIIADTPGHE------------QYTRNMATG-ASTCDLAILLID-ARKGVLDQTRRHSFIATLLGI--KHLVVA 166 (474)
T ss_pred ccCCcEEEEEECCCcH------------HHHHHHHHH-HhhCCEEEEEEE-CCCCccccchHHHHHHHHhCC--CceEEE
Confidence 3455689999999932 334455544 588999877654 5544432 234445555542 478999
Q ss_pred eccCCCCCC
Q 007054 214 LTKLDLMDK 222 (620)
Q Consensus 214 ltK~D~~~~ 222 (620)
+||+|+.+.
T Consensus 167 vNKiD~~~~ 175 (474)
T PRK05124 167 VNKMDLVDY 175 (474)
T ss_pred EEeeccccc
Confidence 999999853
No 222
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.70 E-value=8.7e-08 Score=103.23 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=50.1
Q ss_pred CccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--HHHHHHH
Q 007054 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLAR 201 (620)
Q Consensus 124 ~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~--~~l~l~~ 201 (620)
+++-+...... .++...++||||||.. +.+.++. .-+..+|++||+|+ +..++..+ +.+.++.
T Consensus 65 giTid~~~~~~-~~~~~~~~liDtPGh~------------~f~~~~~-~~~~~aD~allVVd-a~~G~~~qt~~~~~~~~ 129 (406)
T TIGR02034 65 GITIDVAYRYF-STDKRKFIVADTPGHE------------QYTRNMA-TGASTADLAVLLVD-ARKGVLEQTRRHSYIAS 129 (406)
T ss_pred CcCeEeeeEEE-ccCCeEEEEEeCCCHH------------HHHHHHH-HHHhhCCEEEEEEE-CCCCCccccHHHHHHHH
Confidence 34444333333 3345689999999942 3344444 35678999877665 54444333 3445555
Q ss_pred HhCCCCCceEEEeccCCCCCC
Q 007054 202 EVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 202 ~~~~~~~rti~VltK~D~~~~ 222 (620)
.+. ..+.|+|+||+|+.+.
T Consensus 130 ~~~--~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 130 LLG--IRHVVLAVNKMDLVDY 148 (406)
T ss_pred HcC--CCcEEEEEEecccccc
Confidence 554 2468899999999853
No 223
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.69 E-value=1.1e-07 Score=109.39 Aligned_cols=134 Identities=12% Similarity=0.186 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
++..|+|+|..++|||||+|+|++..- ...+ + ....+ +....|+... +
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~~~~-~-----~~~~~------------g~~~~D~~~~--------e 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------RIHK-I-----GEVHD------------GAATMDWMEQ--------E 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------Cccc-c-----ccccC------------CccccCCCHH--------H
Confidence 567999999999999999999986421 1110 0 00000 0011111110 1
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+..| ++-+.....+.. +...++||||||..+. ...+..+++..|++|++|+ +..+...+ .
T Consensus 57 ~~rg----iti~~~~~~~~~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVvd-a~~g~~~~-~ 116 (689)
T TIGR00484 57 KERG----ITITSAATTVFW-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVLD-AVGGVQPQ-S 116 (689)
T ss_pred HhcC----CCEecceEEEEE-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEEe-CCCCCChh-H
Confidence 1122 332222222323 3468999999998641 1236678889999877665 44444333 3
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+++.+...+.+.++|+||+|+...
T Consensus 117 ~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 117 ETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34555666667899999999999853
No 224
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.67 E-value=3.3e-07 Score=95.05 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
....|.|+|.+|||||||+++|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998764
No 225
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.66 E-value=7.7e-08 Score=99.58 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=64.8
Q ss_pred EEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcC
Q 007054 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTG 120 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 120 (620)
|++||.+|+|||||+|+|++..+-+.....||.-|+.-...-.... +.. +.+..+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~----------~~~--------------r~~~~~~ 56 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVEC----------PCK--------------ELGVSCN 56 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCC----------Cch--------------hhhhhhc
Confidence 6899999999999999999998655566678888854221110000 000 0000000
Q ss_pred CCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 007054 121 KTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (620)
Q Consensus 121 ~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~ 186 (620)
...+. .+.+.....+.++||||+...+.. ...+.+...++++++|+++++|..
T Consensus 57 ~~~~~-------~~~~~~~v~i~l~D~aGlv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~ 109 (318)
T cd01899 57 PRYGK-------CIDGKRYVPVELIDVAGLVPGAHE------GKGLGNKFLDDLRDADALIHVVDA 109 (318)
T ss_pred ccccc-------cccCcCcceEEEEECCCCCCCccc------hhhHHHHHHHHHHHCCEEEEEEeC
Confidence 00000 011223346999999999865432 133455667789999999887654
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.65 E-value=5.6e-08 Score=104.49 Aligned_cols=130 Identities=16% Similarity=0.236 Sum_probs=70.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-.|+++|..++|||||+++|++.. ...+.+-.. .+. ..| ... .++.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~~----------------~~~---------~~d--~~~------~E~~ 58 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAAR----------------AYD---------QID--NAP------EEKA 58 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhccccc----------------ccc---------ccc--CCH------HHHh
Confidence 379999999999999999999752 111110000 000 000 000 0111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
.+++.+...+.+. .....++||||||.. +.+.++ ...+..+|+++|+++ +..+...+ ..+
T Consensus 59 ----rG~Ti~~~~~~~~-~~~~~~~liDtpGh~------------~f~~~~-~~~~~~~D~~ilVvd-a~~g~~~q-t~e 118 (394)
T TIGR00485 59 ----RGITINTAHVEYE-TENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVS-ATDGPMPQ-TRE 118 (394)
T ss_pred ----cCcceeeEEEEEc-CCCEEEEEEECCchH------------HHHHHH-HHHHhhCCEEEEEEE-CCCCCcHH-HHH
Confidence 2334344444333 234578999999953 233333 334567899877654 54443222 223
Q ss_pred HHHHhCCCCCceE-EEeccCCCCCC
Q 007054 199 LAREVDPTGERTF-GVLTKLDLMDK 222 (620)
Q Consensus 199 l~~~~~~~~~rti-~VltK~D~~~~ 222 (620)
.+..+...+.+.+ +|+||+|+++.
T Consensus 119 ~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 119 HILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHcCCCEEEEEEEecccCCH
Confidence 4444444466655 68999999864
No 227
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.65 E-value=1.6e-07 Score=90.80 Aligned_cols=66 Identities=26% Similarity=0.151 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch--HHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~--~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.|+||||... .+...|++++|++|++.+..+.. +..- .++..++...+ ..++|+|.||
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 5688999999632 12234889999998876644332 2111 23444444433 5789999999
Q ss_pred CCCCC
Q 007054 217 LDLMD 221 (620)
Q Consensus 217 ~D~~~ 221 (620)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99864
No 228
>PRK12736 elongation factor Tu; Reviewed
Probab=98.64 E-value=6.8e-08 Score=103.69 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCc-eEEEecc
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK 216 (620)
+...++||||||.. +.+.++. .-+..+|+++|+|. +..++..+ ....+..+...|.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~------------~f~~~~~-~~~~~~d~~llVvd-~~~g~~~~-t~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHA------------DYVKNMI-TGAAQMDGAILVVA-ATDGPMPQ-TREHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHH------------HHHHHHH-HHHhhCCEEEEEEE-CCCCCchh-HHHHHHHHHHcCCCEEEEEEEe
Confidence 45678999999932 3444443 33467899877654 54444233 22334444444677 6789999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999853
No 229
>PRK00007 elongation factor G; Reviewed
Probab=98.64 E-value=2e-07 Score=107.19 Aligned_cols=135 Identities=12% Similarity=0.159 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+...|+|+|..++|||||+|+|+...- ...+ +..... +..+.|+....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g------~~~~------~g~v~~------------~~~~~D~~~~E-------- 56 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTG------VNHK------IGEVHD------------GAATMDWMEQE-------- 56 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcC------Cccc------cccccC------------CcccCCCCHHH--------
Confidence 567999999999999999999974311 0000 000000 01111211111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+ ..+++-+.....+.. ....++||||||..+ ... -+...+...|+++++|+ +..++..++
T Consensus 57 ~----~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~------------f~~-ev~~al~~~D~~vlVvd-a~~g~~~qt- 116 (693)
T PRK00007 57 Q----ERGITITSAATTCFW-KDHRINIIDTPGHVD------------FTI-EVERSLRVLDGAVAVFD-AVGGVEPQS- 116 (693)
T ss_pred H----hCCCCEeccEEEEEE-CCeEEEEEeCCCcHH------------HHH-HHHHHHHHcCEEEEEEE-CCCCcchhh-
Confidence 1 123343333333333 356899999999643 112 25667788898877654 656664443
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
..+++.+...+.+.|+++||+|+....
T Consensus 117 ~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 117 ETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 456777777789999999999998543
No 230
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.64 E-value=1.4e-07 Score=101.83 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc--hhcchHHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~--d~~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
...++++||||.. +...+ +..++..+|+++|+|++... .-.+.+.+.++.... ..+.++|+||
T Consensus 79 ~~~i~liDtPGh~------------~f~~~-~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 79 LRRVSFVDAPGHE------------TLMAT-MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred ccEEEEEECCCHH------------HHHHH-HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 3578999999942 23333 34556788998776654421 112334444443332 2568999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999864
No 231
>PRK12739 elongation factor G; Reviewed
Probab=98.64 E-value=1.3e-07 Score=108.82 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.+..|+|+|..++|||||+|+|+...- ...+ . ..... +..+.|+....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g------~~~~-~-----~~v~~------------~~~~~D~~~~E-------- 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTG------KSHK-I-----GEVHD------------GAATMDWMEQE-------- 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCC------Cccc-c-----ccccC------------CccccCCChhH--------
Confidence 567899999999999999999975321 0000 0 00000 00111111110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+ ..+++-+.....+.. +...++||||||..+ . ...+..++...|++|++|+ +..++..++
T Consensus 55 ~----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~------------f-~~e~~~al~~~D~~ilVvD-a~~g~~~qt- 114 (691)
T PRK12739 55 Q----ERGITITSAATTCFW-KGHRINIIDTPGHVD------------F-TIEVERSLRVLDGAVAVFD-AVSGVEPQS- 114 (691)
T ss_pred h----hcCCCccceeEEEEE-CCEEEEEEcCCCHHH------------H-HHHHHHHHHHhCeEEEEEe-CCCCCCHHH-
Confidence 1 122333332322222 456899999999643 1 2247788889998877654 555554433
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+++.+...+.+.|+++||+|+...
T Consensus 115 ~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 115 ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 35666666778999999999999853
No 232
>PRK12735 elongation factor Tu; Reviewed
Probab=98.63 E-value=1.3e-07 Score=101.57 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=44.3
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceE-EEec
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLT 215 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti-~Vlt 215 (620)
.+...++||||||.. +.+.++. .-+..+|.++|++. +..+...+. .+.+..+...+.+.| +|+|
T Consensus 72 ~~~~~i~~iDtPGh~------------~f~~~~~-~~~~~aD~~llVvd-a~~g~~~qt-~e~l~~~~~~gi~~iivvvN 136 (396)
T PRK12735 72 TANRHYAHVDCPGHA------------DYVKNMI-TGAAQMDGAILVVS-AADGPMPQT-REHILLARQVGVPYIVVFLN 136 (396)
T ss_pred CCCcEEEEEECCCHH------------HHHHHHH-hhhccCCEEEEEEE-CCCCCchhH-HHHHHHHHHcCCCeEEEEEE
Confidence 345678999999952 3344443 44668998877665 444443332 234444445567755 5799
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|+|+.+.
T Consensus 137 K~Dl~~~ 143 (396)
T PRK12735 137 KCDMVDD 143 (396)
T ss_pred ecCCcch
Confidence 9999853
No 233
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.62 E-value=1.2e-07 Score=94.39 Aligned_cols=131 Identities=18% Similarity=0.253 Sum_probs=92.8
Q ss_pred cccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHH
Q 007054 33 SLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (620)
Q Consensus 33 ~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (620)
....+-|.|+|||.+|||||||+++|++..++|.+.-+.|--||-=
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h---------------------------------- 218 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH---------------------------------- 218 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh----------------------------------
Confidence 3445889999999999999999999999999898887777555110
Q ss_pred HHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc
Q 007054 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (620)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~ 192 (620)
...-|.+..+.+.||-|+.+ +-|......++. +.+-+..+|.|+.+++.++.++.
T Consensus 219 --------------------~a~Lpsg~~vlltDTvGFis----dLP~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae 273 (410)
T KOG0410|consen 219 --------------------SAHLPSGNFVLLTDTVGFIS----DLPIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAE 273 (410)
T ss_pred --------------------hccCCCCcEEEEeechhhhh----hCcHHHHHHHHH-HHHHHhhcceEEEEeecCCccHH
Confidence 02345567788999999987 344445555544 44557789999888877766655
Q ss_pred chH--HHHHHHHhCC----CCCceEEEeccCCCCCC
Q 007054 193 TSD--AMKLAREVDP----TGERTFGVLTKLDLMDK 222 (620)
Q Consensus 193 ~~~--~l~l~~~~~~----~~~rti~VltK~D~~~~ 222 (620)
.+. .+...+.++- ...++|=|=||+|..+.
T Consensus 274 ~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 274 EQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 443 3556666653 24567778888887643
No 234
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.62 E-value=1.9e-07 Score=89.60 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=40.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hHHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||..... .+...++..+++++++....+.+ +.. ..++..++...+ ..+.|+|.||
T Consensus 49 ~~l~i~Dt~g~~~~~-------------~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK 114 (187)
T cd04129 49 VQLALWDTAGQEEYE-------------RLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLK 114 (187)
T ss_pred EEEEEEECCCChhcc-------------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 467899999964311 11123567889887765433322 111 123444444434 4899999999
Q ss_pred CCCCC
Q 007054 217 LDLMD 221 (620)
Q Consensus 217 ~D~~~ 221 (620)
+|+.+
T Consensus 115 ~Dl~~ 119 (187)
T cd04129 115 KDLRQ 119 (187)
T ss_pred hhhhh
Confidence 99864
No 235
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.61 E-value=8.1e-08 Score=109.42 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=44.9
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chHHHHHHHHhCCCCCceEEE
Q 007054 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGV 213 (620)
Q Consensus 136 ~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~~l~l~~~~~~~~~rti~V 213 (620)
..+...++||||||.. +...+++. .+..+|+++|+|+ +..++. +.+.+.++..+.. .+.|+|
T Consensus 100 ~~~~~~~~liDtPG~~------------~f~~~~~~-~~~~aD~~llVvd-a~~g~~~~t~e~~~~~~~~~~--~~iivv 163 (632)
T PRK05506 100 ATPKRKFIVADTPGHE------------QYTRNMVT-GASTADLAIILVD-ARKGVLTQTRRHSFIASLLGI--RHVVLA 163 (632)
T ss_pred ccCCceEEEEECCChH------------HHHHHHHH-HHHhCCEEEEEEE-CCCCccccCHHHHHHHHHhCC--CeEEEE
Confidence 3455689999999942 23344443 4778998877654 544442 2334445554431 568889
Q ss_pred eccCCCCC
Q 007054 214 LTKLDLMD 221 (620)
Q Consensus 214 ltK~D~~~ 221 (620)
+||+|+.+
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999985
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=98.60 E-value=1.1e-07 Score=101.97 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=44.5
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceE-EEec
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLT 215 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti-~Vlt 215 (620)
.+...++||||||.. +.+.++. ..+..+|+++++|+ +..++..+ ....+..+...+.+.+ +|+|
T Consensus 72 ~~~~~i~~iDtPG~~------------~f~~~~~-~~~~~aD~~llVVD-a~~g~~~q-t~~~~~~~~~~g~p~iiVvvN 136 (396)
T PRK00049 72 TEKRHYAHVDCPGHA------------DYVKNMI-TGAAQMDGAILVVS-AADGPMPQ-TREHILLARQVGVPYIVVFLN 136 (396)
T ss_pred CCCeEEEEEECCCHH------------HHHHHHH-hhhccCCEEEEEEE-CCCCCchH-HHHHHHHHHHcCCCEEEEEEe
Confidence 345678999999952 3344443 44678999977655 44444222 2334444444567765 6899
Q ss_pred cCCCCC
Q 007054 216 KLDLMD 221 (620)
Q Consensus 216 K~D~~~ 221 (620)
|+|+++
T Consensus 137 K~D~~~ 142 (396)
T PRK00049 137 KCDMVD 142 (396)
T ss_pred ecCCcc
Confidence 999985
No 237
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.60 E-value=1.4e-07 Score=88.81 Aligned_cols=119 Identities=19% Similarity=0.341 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+-|.|+++|..+||||+|+..|...... .++|.....+.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~------------------------------------- 40 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIA------------------------------------- 40 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEE-------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCce-------------------------------------
Confidence 3589999999999999999999976542 23332221110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH--hhcCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS--YVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~--yi~~~~~iil~V~~a~~d~~~~ 194 (620)
..+..+....+.+||+||-.+.. ..+... |+..+.+||++|+++...-.-.
T Consensus 41 ---------------~~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~ 93 (181)
T PF09439_consen 41 ---------------YNVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELR 93 (181)
T ss_dssp ---------------CCGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHH
T ss_pred ---------------EEeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHH
Confidence 00123345688999999976532 122333 6888999988887654211111
Q ss_pred HHHH------HHHHhCCCCCceEEEeccCCCCCCC
Q 007054 195 DAMK------LAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 195 ~~l~------l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+..+ ......+.+.|+++++||.|+....
T Consensus 94 ~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 94 DVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 1111 1233346789999999999987643
No 238
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.59 E-value=1.7e-07 Score=92.67 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=43.7
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCc-eEEEe
Q 007054 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVL 214 (620)
Q Consensus 136 ~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~r-ti~Vl 214 (620)
.+....++++||||.. .. +...++.+|++++++ ++..++..++ ..+...+...|.+ +|+|+
T Consensus 79 ~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVllvi-Da~~~~~~~~-~~i~~~l~~~g~p~vi~Vv 140 (225)
T cd01882 79 TGKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLLLI-DASFGFEMET-FEFLNILQVHGFPRVMGVL 140 (225)
T ss_pred ecCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEEEE-ecCcCCCHHH-HHHHHHHHHcCCCeEEEEE
Confidence 3456789999999832 11 123357789886655 4555553333 3455555555666 56699
Q ss_pred ccCCCCCCC
Q 007054 215 TKLDLMDKG 223 (620)
Q Consensus 215 tK~D~~~~~ 223 (620)
||+|++.+.
T Consensus 141 nK~D~~~~~ 149 (225)
T cd01882 141 THLDLFKKN 149 (225)
T ss_pred eccccCCcH
Confidence 999998543
No 239
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.3e-07 Score=81.66 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.-.|.|+|+.++||+|++-...|..|-| ..++.+-+.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~---afvsTvGid---------------------------------------- 57 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS---AFVSTVGID---------------------------------------- 57 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccc---ceeeeeeee----------------------------------------
Confidence 3489999999999999999999998733 111111111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--hcchH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~~~~~ 195 (620)
|-... + ..+.....+.++||.|- +..+.++-.|++.++.+||+.+..|.. .+.++
T Consensus 58 -------FKvKT--v-yr~~kRiklQiwDTagq-------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqd 114 (193)
T KOG0093|consen 58 -------FKVKT--V-YRSDKRIKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQD 114 (193)
T ss_pred -------EEEeE--e-eecccEEEEEEEecccc-------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHH
Confidence 11000 0 12333467899999994 346788889999999999998766542 22355
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+.-..+.+.....++|+|.||||+-++.
T Consensus 115 w~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 115 WITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HHHHheeeeccCceEEEEecccCCccce
Confidence 5556666666788999999999998654
No 240
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=8.8e-08 Score=88.75 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=89.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-.||++|+.|+|||||+.......| +.....+.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~TI---------------------------------------------- 38 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQF-HENIEPTI---------------------------------------------- 38 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCcc-cccccccc----------------------------------------------
Confidence 3799999999999999999998876 22111111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
+..|-...+. .+.....+.|+||.|--+ ...++.-|++++++.|++.+-.+.+ +-..+-.
T Consensus 39 ---GaaF~tktv~---~~~~~ikfeIWDTAGQER-------------y~slapMYyRgA~AAivvYDit~~~-SF~~aK~ 98 (200)
T KOG0092|consen 39 ---GAAFLTKTVT---VDDNTIKFEIWDTAGQER-------------YHSLAPMYYRGANAAIVVYDITDEE-SFEKAKN 98 (200)
T ss_pred ---ccEEEEEEEE---eCCcEEEEEEEEcCCccc-------------ccccccceecCCcEEEEEEecccHH-HHHHHHH
Confidence 0111111111 122245678999999533 4566777999999998865433221 1222223
Q ss_pred HHHHhCCCC---CceEEEeccCCCCCCCC-cHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 199 LAREVDPTG---ERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 199 l~~~~~~~~---~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
..+++.... .-+.+|-||+|+.+... ++.+ ...-...-++-|+..++..+.+++..+..+.
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~e-a~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEE-AQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHH-HHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 334443322 33455899999998443 2211 1111223567788888888877766555443
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=98.58 E-value=2.2e-07 Score=101.47 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=72.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-.|+++|..++|||||+++|++... .+..+.+ ..+ .+.|... .++.
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~------------~~~---------~~~D~~~--------~Er~ 127 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAP------------KKY---------DEIDAAP--------EERA 127 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh-----hhccccc------------ccc---------ccccCCh--------hHHh
Confidence 4689999999999999999997532 1111111 000 0001000 0111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
.+++-+.....+ ..+...++||||||.. +.+.++ ..-+..+|+++|+|. +..+...+. .+
T Consensus 128 ----rGiTi~~~~~~~-~~~~~~i~liDtPGh~------------~f~~~~-~~g~~~aD~ailVVd-a~~G~~~qt-~e 187 (478)
T PLN03126 128 ----RGITINTATVEY-ETENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVS-GADGPMPQT-KE 187 (478)
T ss_pred ----CCeeEEEEEEEE-ecCCcEEEEEECCCHH------------HHHHHH-HHHHhhCCEEEEEEE-CCCCCcHHH-HH
Confidence 223333333222 2345689999999943 344444 344568999877654 544443332 23
Q ss_pred HHHHhCCCCCc-eEEEeccCCCCCC
Q 007054 199 LAREVDPTGER-TFGVLTKLDLMDK 222 (620)
Q Consensus 199 l~~~~~~~~~r-ti~VltK~D~~~~ 222 (620)
.+..+...|.+ .|+|+||+|+.+.
T Consensus 188 ~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 188 HILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHcCCCeEEEEEecccccCH
Confidence 33344444666 7889999999863
No 242
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.58 E-value=7.2e-08 Score=82.80 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 68 (620)
.+|++||..|+||+||.++|-|...+++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT 31 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT 31 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc
Confidence 379999999999999999999998866443
No 243
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.58 E-value=1.3e-07 Score=83.42 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
+|+|+|+.++|||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999875
No 244
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.57 E-value=1.8e-07 Score=88.80 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
--+|+++|.++|||||+++.|.+..+ .+-.||
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~-------~~~~pT----------------------------------------- 45 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEI-------SETIPT----------------------------------------- 45 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSE-------EEEEEE-----------------------------------------
T ss_pred EEEEEEECCCccchHHHHHHhhhccc-------cccCcc-----------------------------------------
Confidence 34999999999999999999997654 112221
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
.++.... +.. ....++++|++|-.. ++.+...|+++++.||++|++++.+- -.++.
T Consensus 46 -----~g~~~~~----i~~-~~~~~~~~d~gG~~~-------------~~~~w~~y~~~~~~iIfVvDssd~~~-l~e~~ 101 (175)
T PF00025_consen 46 -----IGFNIEE----IKY-KGYSLTIWDLGGQES-------------FRPLWKSYFQNADGIIFVVDSSDPER-LQEAK 101 (175)
T ss_dssp -----SSEEEEE----EEE-TTEEEEEEEESSSGG-------------GGGGGGGGHTTESEEEEEEETTGGGG-HHHHH
T ss_pred -----cccccce----eee-CcEEEEEEecccccc-------------ccccceeeccccceeEEEEeccccee-ecccc
Confidence 0111111 111 345789999999432 24456779999999988887665431 23333
Q ss_pred HHHHH-hC---CCCCceEEEeccCCCCCCC
Q 007054 198 KLARE-VD---PTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 198 ~l~~~-~~---~~~~rti~VltK~D~~~~~ 223 (620)
..... +. -.+.|.++++||.|..+..
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred cchhhhcchhhcccceEEEEeccccccCcc
Confidence 32222 22 2468999999999987543
No 245
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.56 E-value=1.9e-07 Score=101.59 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=42.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--hc--chHHHHHHHHhCCCCCceEEE
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IA--TSDAMKLAREVDPTGERTFGV 213 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~~--~~~~l~l~~~~~~~~~rti~V 213 (620)
+...++|+||||.. +.+.. +..++..+|++||+++..+.. .. +...+.+++.+. ..++|+|
T Consensus 83 ~~~~i~iiDtpGh~------------~f~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHR------------DFIKN-MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHH------------HHHHH-HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEEE
Confidence 34689999999932 22333 334568899998877654431 21 222233444443 2578999
Q ss_pred eccCCCCC
Q 007054 214 LTKLDLMD 221 (620)
Q Consensus 214 ltK~D~~~ 221 (620)
+||+|+.+
T Consensus 148 iNK~Dl~~ 155 (426)
T TIGR00483 148 INKMDSVN 155 (426)
T ss_pred EEChhccC
Confidence 99999975
No 246
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.56 E-value=4e-07 Score=102.03 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=47.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
+...++||||||..+ +...+..+++.+|.++|+|++. .+...+. ...++.+...+.+.|+|+||+
T Consensus 62 ~~~kinlIDTPGh~D-------------F~~ev~~~l~~aD~alLVVDa~-~G~~~qT-~~~l~~a~~~~ip~IVviNKi 126 (594)
T TIGR01394 62 NGTKINIVDTPGHAD-------------FGGEVERVLGMVDGVLLLVDAS-EGPMPQT-RFVLKKALELGLKPIVVINKI 126 (594)
T ss_pred CCEEEEEEECCCHHH-------------HHHHHHHHHHhCCEEEEEEeCC-CCCcHHH-HHHHHHHHHCCCCEEEEEECC
Confidence 356899999999532 3345678889999998876543 3432332 223333444578899999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+...
T Consensus 127 D~~~a 131 (594)
T TIGR01394 127 DRPSA 131 (594)
T ss_pred CCCCc
Confidence 98643
No 247
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=4.2e-07 Score=80.11 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=89.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
.-|..||+||..++||+.|+...+.- .||-|.+.+-..--.|..
T Consensus 5 kflfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmikt----------------------------------- 48 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKT----------------------------------- 48 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEE-----------------------------------
Confidence 45789999999999999999999976 468776654433322221
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc---hhc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIA 192 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~---d~~ 192 (620)
+++.+. ...|.|+||.| .+..++++.+|.+.++++||+.+-+.. |.
T Consensus 49 ----------------vev~ge-kiklqiwdtag-------------qerfrsitqsyyrsahalilvydiscqpsfdc- 97 (213)
T KOG0095|consen 49 ----------------VEVNGE-KIKLQIWDTAG-------------QERFRSITQSYYRSAHALILVYDISCQPSFDC- 97 (213)
T ss_pred ----------------EEECCe-EEEEEEeeccc-------------hHHHHHHHHHHhhhcceEEEEEecccCcchhh-
Confidence 122222 24688999999 367799999999999999997643322 22
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~ 224 (620)
..+|++-..+......=.|+|-||+|+.++.+
T Consensus 98 lpewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 98 LPEWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred hHHHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 46778777777776777899999999987643
No 248
>PRK10218 GTP-binding protein; Provisional
Probab=98.54 E-value=4.3e-07 Score=101.73 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=46.8
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
+...+.||||||..+ ....+..+++.+|++||+|++. .+...+.. ..++.+...+.+.|+|+||+
T Consensus 66 ~~~~inliDTPG~~d-------------f~~~v~~~l~~aDg~ILVVDa~-~G~~~qt~-~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 66 NDYRINIVDTPGHAD-------------FGGEVERVMSMVDSVLLVVDAF-DGPMPQTR-FVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred CCEEEEEEECCCcch-------------hHHHHHHHHHhCCEEEEEEecc-cCccHHHH-HHHHHHHHcCCCEEEEEECc
Confidence 456899999999643 1345677889999998876544 33323322 23333444578899999999
Q ss_pred CCCC
Q 007054 218 DLMD 221 (620)
Q Consensus 218 D~~~ 221 (620)
|...
T Consensus 131 D~~~ 134 (607)
T PRK10218 131 DRPG 134 (607)
T ss_pred CCCC
Confidence 9864
No 249
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.53 E-value=1.6e-06 Score=80.04 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-+.|+|+|.+++||+|++.+++.... ++-....+..- ...
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s---------~k~----------------------------- 49 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVS---------GKG----------------------------- 49 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc-ceeeccccccc---------ccc-----------------------------
Confidence 457999999999999999999998852 22211111100 000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.....+..+.-.+++ .....+.|+||||- ...+-|..-+.+.+..+|++|+++ .+. +..+
T Consensus 50 ---kr~tTva~D~g~~~~--~~~~~v~LfgtPGq-------------~RF~fm~~~l~~ga~gaivlVDss-~~~-~~~a 109 (187)
T COG2229 50 ---KRPTTVAMDFGSIEL--DEDTGVHLFGTPGQ-------------ERFKFMWEILSRGAVGAIVLVDSS-RPI-TFHA 109 (187)
T ss_pred ---ccceeEeecccceEE--cCcceEEEecCCCc-------------HHHHHHHHHHhCCcceEEEEEecC-CCc-chHH
Confidence 000111222222222 22357899999994 344566677788888887766543 333 3355
Q ss_pred HHHHHHhCCCC-CceEEEeccCCCCCCCC--cHHHHHhCCccccCCCeeEEeeCChh
Q 007054 197 MKLAREVDPTG-ERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQA 250 (620)
Q Consensus 197 l~l~~~~~~~~-~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~lg~~~v~~~s~~ 250 (620)
..+...+.... .|.++.+||.|+.+... +..+++.-.. +.++.++...+..+
T Consensus 110 ~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--~~~~vi~~~a~e~~ 164 (187)
T COG2229 110 EEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--LSVPVIEIDATEGE 164 (187)
T ss_pred HHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--CCCceeeeecccch
Confidence 55665555544 89999999999987543 3445443221 34555555554333
No 250
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.52 E-value=2.1e-07 Score=86.73 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLP 65 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP 65 (620)
..|+++|.+|+|||||+|+|.|....+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~ 129 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCK 129 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCcee
Confidence 378899999999999999999987643
No 251
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.52 E-value=6.2e-07 Score=83.67 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=54.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHHHHHHHhC-CCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVD-PTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l~l~~~~~-~~~~rti~VltK 216 (620)
..+.++||+|-.. ..|.+.+|++|++.+..+.+ +.+ ..++....... ....++++|.||
T Consensus 47 ~~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 47 HLLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred EEEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 4588999999631 13667899998876554432 111 12333333332 245789999999
Q ss_pred CCCCCCC-CcH-HHHHhCCcccc-CCCeeEEeeCChhhhhccC
Q 007054 217 LDLMDKG-TNA-LDVLEGRSYRL-QHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 217 ~D~~~~~-~~~-~~~l~~~~~~l-~lg~~~v~~~s~~~~~~~~ 256 (620)
.|+.... ... .+....-.... ...|+.+++.++.++++.+
T Consensus 109 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 109 DAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred HHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence 9985321 111 11110001112 3567778777777665543
No 252
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.52 E-value=6.5e-07 Score=99.03 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=48.1
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
+...++++||||..+ ....+..++..+|++|+++++. .++..+ ...+.+.....+.|+++++||+
T Consensus 77 ~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa~-~gv~~~-t~~l~~~~~~~~iPiiv~iNK~ 141 (526)
T PRK00741 77 RDCLINLLDTPGHED-------------FSEDTYRTLTAVDSALMVIDAA-KGVEPQ-TRKLMEVCRLRDTPIFTFINKL 141 (526)
T ss_pred CCEEEEEEECCCchh-------------hHHHHHHHHHHCCEEEEEEecC-CCCCHH-HHHHHHHHHhcCCCEEEEEECC
Confidence 346799999999643 2334567788999998876544 344332 2344555555689999999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+...
T Consensus 142 D~~~a 146 (526)
T PRK00741 142 DRDGR 146 (526)
T ss_pred ccccc
Confidence 98643
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.51 E-value=6.7e-07 Score=97.02 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++|||+||. .+.+.+|+. -+..+|.++|+|.+...... +.+.+.++..+.- .+.|+|+||+
T Consensus 117 ~~i~~IDtPGH------------~~fi~~m~~-g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi--~~iIVvlNKi 181 (460)
T PTZ00327 117 RHVSFVDCPGH------------DILMATMLN-GAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKL--KHIIILQNKI 181 (460)
T ss_pred ceEeeeeCCCH------------HHHHHHHHH-HHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCC--CcEEEEEecc
Confidence 36899999993 244455443 35678988776654432122 3344545444432 4689999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99853
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.50 E-value=6.2e-07 Score=99.23 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=46.7
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEecc
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
++...+.|+||||..+ +...+..++..+|++|++|++.. .+..+ ...+.+.....+.++|+|+||
T Consensus 77 ~~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~-t~~l~~~~~~~~~PiivviNK 141 (527)
T TIGR00503 77 YRDCLVNLLDTPGHED-------------FSEDTYRTLTAVDNCLMVIDAAK-GVETR-TRKLMEVTRLRDTPIFTFMNK 141 (527)
T ss_pred eCCeEEEEEECCChhh-------------HHHHHHHHHHhCCEEEEEEECCC-CCCHH-HHHHHHHHHhcCCCEEEEEEC
Confidence 3457899999999742 23345667889999988766543 33222 222334444457899999999
Q ss_pred CCCCC
Q 007054 217 LDLMD 221 (620)
Q Consensus 217 ~D~~~ 221 (620)
+|+..
T Consensus 142 iD~~~ 146 (527)
T TIGR00503 142 LDRDI 146 (527)
T ss_pred ccccC
Confidence 99863
No 255
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.50 E-value=5.3e-07 Score=104.02 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=47.8
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEecc
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
+....+.||||||..+. ...+..++..+|++|+++. +..++.. ....+.+.+...+.+.++|+||
T Consensus 83 ~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVvd-a~~g~~~-~t~~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVC-AVEGVMP-QTETVLRQALKENVKPVLFINK 147 (720)
T ss_pred CCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEEe-cCCCCCc-cHHHHHHHHHHcCCCEEEEEEC
Confidence 44567999999998642 2345678899999988664 4444422 2334455554456788999999
Q ss_pred CCCCC
Q 007054 217 LDLMD 221 (620)
Q Consensus 217 ~D~~~ 221 (620)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99863
No 256
>PLN00023 GTP-binding protein; Provisional
Probab=98.49 E-value=5.9e-07 Score=91.91 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCC------------
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDP------------ 205 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~------------ 205 (620)
..+.|+||+|- +..+.+...|+++++++|+|.+..+..- ....++..+.....
T Consensus 83 v~LqIWDTAGq-------------ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 83 FFVELWDVSGH-------------ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEEECCCC-------------hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 35789999994 3346677889999999988776544321 11223333333211
Q ss_pred CCCceEEEeccCCCCCC
Q 007054 206 TGERTFGVLTKLDLMDK 222 (620)
Q Consensus 206 ~~~rti~VltK~D~~~~ 222 (620)
...++|+|.||+|+.++
T Consensus 150 ~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 150 LPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCcEEEEEECcccccc
Confidence 13579999999999754
No 257
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.48 E-value=8.4e-07 Score=90.62 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=58.5
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC--------------CCeEEEEeccCCchhcchHHHHHHHHhC
Q 007054 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK--------------PNSVILAISPANQDIATSDAMKLAREVD 204 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~--------------~~~iil~V~~a~~d~~~~~~l~l~~~~~ 204 (620)
.+|++|||||+++.-.. .-.+-+...+++....|+.+ .|+++.++-|....+ ..-.+...+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l-~~~DIe~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL-KPLDIEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC-CHHHHHHHHHHh
Confidence 57999999999874432 22234666677777777642 367777777777777 444456778777
Q ss_pred CCCCceEEEeccCCCCCCC
Q 007054 205 PTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 205 ~~~~rti~VltK~D~~~~~ 223 (620)
. ....|-|+.|.|.+...
T Consensus 161 ~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred c-ccCeeeeeeccccCCHH
Confidence 6 48899999999998654
No 258
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=7.7e-07 Score=91.63 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=58.3
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEEeccCCchhcchHHHHHHHHhCC
Q 007054 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILAISPANQDIATSDAMKLAREVDP 205 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~-------------~~~iil~V~~a~~d~~~~~~l~l~~~~~~ 205 (620)
.+||+|||||+++.-.. +-.+-+...+.+.-..|+.. .+|.+.++.|...++. .-.+.+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~-p~Di~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLK-PLDIEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCc-HhhHHHHHHHhc
Confidence 47899999999874332 22233556677777777642 4677778888777673 334557777765
Q ss_pred CCCceEEEeccCCCCCCCC
Q 007054 206 TGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 206 ~~~rti~VltK~D~~~~~~ 224 (620)
..++|.|+.|.|.+.+..
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 589999999999997654
No 259
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.46 E-value=1.2e-06 Score=94.51 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-.|+|+|+-++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 37999999999999999999875
No 260
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=2.3e-07 Score=86.29 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 68 (620)
..++|+++|.+|+|||||+|+|+|....+++.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~ 130 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN 130 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccC
Confidence 56799999999999999999999986544443
No 261
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.43 E-value=2.4e-07 Score=87.50 Aligned_cols=29 Identities=31% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcc
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~ 66 (620)
..+|+|+|.+|+|||||+|+|+|....++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~ 145 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV 145 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee
Confidence 35899999999999999999999876444
No 262
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.42 E-value=3.7e-07 Score=87.93 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999998764
No 263
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.4e-06 Score=80.23 Aligned_cols=122 Identities=21% Similarity=0.304 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..+-.++++|+.++|||+||-..++..|-|... .| |-+ ++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~T-----iGv--------ef------------------------- 43 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LT-----IGV--------EF------------------------- 43 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCcccccc--ce-----eee--------ee-------------------------
Confidence 356789999999999999999999999855332 11 100 00
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--hcc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~~~ 193 (620)
| .-.+.|.+ ....|.|+||.|- +.+++++.+|.+.+-..||+.+-.+.+ -..
T Consensus 44 ----g--------~r~~~id~-k~IKlqiwDtaGq-------------e~frsv~~syYr~a~GalLVydit~r~sF~hL 97 (216)
T KOG0098|consen 44 ----G--------ARMVTIDG-KQIKLQIWDTAGQ-------------ESFRSVTRSYYRGAAGALLVYDITRRESFNHL 97 (216)
T ss_pred ----c--------eeEEEEcC-ceEEEEEEecCCc-------------HHHHHHHHHHhccCcceEEEEEccchhhHHHH
Confidence 0 00111222 2246789999993 567899999999988887765433322 123
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
..+|.=+++......-++++-||+|+..+.
T Consensus 98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 98 TSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 345666666654457788889999998655
No 264
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.41 E-value=3.1e-06 Score=83.17 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch---HHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~---~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.++||||-.. ...+...|+..++++|++++..+ ...-. .++....... ...++++|.||
T Consensus 58 i~i~~~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEK-------------FGGLRDGYYIKGQCAIIMFDVTS-RITYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 4678999999422 23445667888898877654332 21111 1222222222 24678899999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+|+.+..... +... .....+..|+.+++.++.++++
T Consensus 123 ~Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 123 VDVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred ccCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHH
Confidence 9986532211 1111 1112335667777766665543
No 265
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=6.4e-07 Score=92.10 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=68.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.++.+||-||+|||||+|||+....-+.++..||--|-+=. ...+.. .+. ....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Gi-v~v~d~-----------------------rl~-~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGV-VYVPDC-----------------------RLD-ELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeE-EecCch-----------------------HHH-HHHHh
Confidence 47999999999999999999999866778889998772211 011000 000 01111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~ 186 (620)
.+-.. .+. ...+.|||.+|+...+..| +..-+--..-|++.|+|+.+|..
T Consensus 58 ~~c~~-----k~~-------~~~ve~vDIAGLV~GAs~G------eGLGNkFL~~IRevdaI~hVVr~ 107 (372)
T COG0012 58 VKCPP-----KIR-------PAPVEFVDIAGLVKGASKG------EGLGNKFLDNIREVDAIIHVVRC 107 (372)
T ss_pred cCCCC-----cEE-------eeeeEEEEecccCCCcccC------CCcchHHHHhhhhcCeEEEEEEe
Confidence 11000 011 2478999999999988765 33456667788999999887753
No 266
>PRK13351 elongation factor G; Reviewed
Probab=98.39 E-value=1.7e-06 Score=99.71 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=48.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
....+.||||||..+ ....+..+++.+|++|++++. ..+... ......+.+...+.+.++|+||+
T Consensus 71 ~~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~ilVvd~-~~~~~~-~~~~~~~~~~~~~~p~iiviNK~ 135 (687)
T PRK13351 71 DNHRINLIDTPGHID-------------FTGEVERSLRVLDGAVVVFDA-VTGVQP-QTETVWRQADRYGIPRLIFINKM 135 (687)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEEeC-CCCCCH-HHHHHHHHHHhcCCCEEEEEECC
Confidence 356899999999643 234567888999999886654 433322 23344555666678999999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+...
T Consensus 136 D~~~~ 140 (687)
T PRK13351 136 DRVGA 140 (687)
T ss_pred CCCCC
Confidence 98753
No 267
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.39 E-value=7.2e-06 Score=84.80 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.-+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999874
No 268
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.38 E-value=2.1e-06 Score=100.57 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=47.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
..++||||||..+ .+.+ +...++.+|+.|++|+ +..++..+. ..+.+.+...+.+.|+++||+|.
T Consensus 98 ~~inliDtPGh~d------------F~~e-~~~al~~~D~ailVvd-a~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVD------------FSSE-VTAALRITDGALVVVD-CIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHH------------HHHH-HHHHHhhcCEEEEEEE-CCCCCcccH-HHHHHHHHHCCCCEEEEEECCcc
Confidence 4578999999642 3333 3556788999977665 555664444 34666777778999999999998
Q ss_pred C
Q 007054 220 M 220 (620)
Q Consensus 220 ~ 220 (620)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 269
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.37 E-value=1.7e-06 Score=100.10 Aligned_cols=133 Identities=14% Similarity=0.256 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
....|+|+|+.++|||||+++|+... |..++. ..+ ...+.|+...+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~--------~~g------------~~~~~D~~~~E-------- 64 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEE--------LAG------------EQLALDFDEEE-------- 64 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchh--------hcC------------cceecCccHHH--------
Confidence 56789999999999999999998542 222210 000 01112221111
Q ss_pred hhcCCCCCccCccEEEEEe-cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 117 RVTGKTKQISPIPIHLSIY-SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~-~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
+..|. .+....+.+... ......++||||||..+. ...+...+...|++|++|+ +..++..+
T Consensus 65 ~~rgi--Ti~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVvd-a~~g~~~~- 127 (731)
T PRK07560 65 QARGI--TIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVD-AVEGVMPQ- 127 (731)
T ss_pred HHhhh--hhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEEE-CCCCCCcc-
Confidence 11111 111222222221 223456899999997651 2345677788999977655 44454333
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
...+.+.+...+.+.|+++||+|..
T Consensus 128 t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 128 TETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHHcCCCeEEEEECchhh
Confidence 2234444444467789999999986
No 270
>PTZ00416 elongation factor 2; Provisional
Probab=98.36 E-value=2e-06 Score=100.54 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
..++|+||||..+ ...+ +...++.+|++|++| ++..++..+.. .+.+.+...+.+.|+++||+|+
T Consensus 92 ~~i~liDtPG~~~------------f~~~-~~~al~~~D~ailVv-da~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVD------------FSSE-VTAALRVTDGALVVV-DCVEGVCVQTE-TVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHh------------HHHH-HHHHHhcCCeEEEEE-ECCCCcCccHH-HHHHHHHHcCCCEEEEEEChhh
Confidence 3589999999753 2222 466678899997755 46666655543 5667777777899999999998
Q ss_pred C
Q 007054 220 M 220 (620)
Q Consensus 220 ~ 220 (620)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 271
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.35 E-value=4.8e-07 Score=90.86 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+-+.|.+||-||+||||++|+|+....-|.....||--|-+-+..-. .. +.+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~--------------d~--------------Rfd 70 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVP--------------DS--------------RFD 70 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecC--------------ch--------------HHH
Confidence 44699999999999999999999987767777899987744432110 00 111
Q ss_pred hhcCCCCCccCccEEEEEecCC---CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEec
Q 007054 117 RVTGKTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS 185 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~---~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~ 185 (620)
.++. +++|. ...|+++|..|++..+..|+ ..-+-..+.|+..|+|+-+|.
T Consensus 71 ~l~~-------------~Y~~~~~vpa~l~v~DIAGLvkGAs~G~------GLGN~FLs~iR~vDaifhVVr 123 (391)
T KOG1491|consen 71 LLCP-------------IYGPKSKVPAFLTVYDIAGLVKGASAGE------GLGNKFLSHIRHVDAIFHVVR 123 (391)
T ss_pred HHHH-------------hcCCcceeeeeEEEEeecccccCcccCc------CchHHHHHhhhhccceeEEEE
Confidence 1111 23332 24789999999999887653 345666778899999987664
No 272
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.33 E-value=1.5e-06 Score=94.61 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=43.0
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh---------cchHHHHHHHHhCCC
Q 007054 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDPT 206 (620)
Q Consensus 136 ~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~---------~~~~~l~l~~~~~~~ 206 (620)
..+...++||||||.. +.+.++. ..+..+|.+||+|++ ..+. .+.+.+.+++.+
T Consensus 81 ~~~~~~i~lIDtPGh~------------~f~~~~~-~g~~~aD~ailVVda-~~G~~e~~~~~~~qT~eh~~~~~~~--- 143 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHR------------DFIKNMI-TGTSQADVAILVVAS-TAGEFEAGISKDGQTREHALLAFTL--- 143 (446)
T ss_pred ccCCeEEEEEECCChH------------HHHHHHH-HhhhhcCEEEEEEEc-CCCceecccCCCccHHHHHHHHHHc---
Confidence 3455689999999932 3444443 346789999886654 4332 344445555444
Q ss_pred CC-ceEEEeccCCC
Q 007054 207 GE-RTFGVLTKLDL 219 (620)
Q Consensus 207 ~~-rti~VltK~D~ 219 (620)
|. +.|+++||+|.
T Consensus 144 gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 144 GVKQMIVCINKMDD 157 (446)
T ss_pred CCCeEEEEEEcccc
Confidence 54 46799999994
No 273
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=8.9e-07 Score=84.58 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=50.6
Q ss_pred CCcEEEeCCCCCcccc-CCCCccHHHHHHHHHHHhhcC--------------CCeEEEEeccCCchhcchHHHHHHHHhC
Q 007054 140 VNLTLIDLPGLTKVAV-EGQPDTIVEDIESMVRSYVEK--------------PNSVILAISPANQDIATSDAMKLAREVD 204 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~-~~q~~~~~~~~~~~~~~yi~~--------------~~~iil~V~~a~~d~~~~~~l~l~~~~~ 204 (620)
..|+++||||+++.-. .+-.+-+...+.+.-.+|+++ .+|++.++-|....+.. -.+.+.+.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrp-lDieflkrLt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRP-LDIEFLKRLT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCc-ccHHHHHHHh
Confidence 5789999999987322 222344666677776777653 36776666665444422 2334555554
Q ss_pred CCCCceEEEeccCCCCC
Q 007054 205 PTGERTFGVLTKLDLMD 221 (620)
Q Consensus 205 ~~~~rti~VltK~D~~~ 221 (620)
. -..+|-|+-|.|.+.
T Consensus 183 ~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 183 E-VVNVVPVIAKADTLT 198 (336)
T ss_pred h-hheeeeeEeeccccc
Confidence 3 367899999999874
No 274
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.31 E-value=6.1e-06 Score=74.49 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=92.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-+|.++|--||||||+++.+.|.+. +.--.|.+
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~g-------------------------------------------- 49 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLG-------------------------------------------- 49 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccc--------------------------------------------
Confidence 4999999999999999999999863 11111111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
|--..+. .+...++++|.-|= ...++..+.|....|++|+||+++. ...-++...
T Consensus 50 ------f~Iktl~-----~~~~~L~iwDvGGq-------------~~lr~~W~nYfestdglIwvvDssD-~~r~~e~~~ 104 (185)
T KOG0073|consen 50 ------FQIKTLE-----YKGYTLNIWDVGGQ-------------KTLRSYWKNYFESTDGLIWVVDSSD-RMRMQECKQ 104 (185)
T ss_pred ------eeeEEEE-----ecceEEEEEEcCCc-------------chhHHHHHHhhhccCeEEEEEECch-HHHHHHHHH
Confidence 1111111 12467899999883 4457888999999999999887754 333344333
Q ss_pred HHHHh----CCCCCceEEEeccCCCCCCCC--cHHHHHhCCc--cccCCCeeEEeeCChhhhhccCCHHHHHHHH
Q 007054 199 LAREV----DPTGERTFGVLTKLDLMDKGT--NALDVLEGRS--YRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (620)
Q Consensus 199 l~~~~----~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~--~~l~lg~~~v~~~s~~~~~~~~~~~~~~~~e 265 (620)
..+.+ .-.|.+.+++.||.|+-..-. .....+.=+. .......+.+...+++++.++++..-....+
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 33222 334789999999999872211 1111111111 1122344666677776666655555444333
No 275
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.31 E-value=1.1e-06 Score=80.25 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.++++|.+|+|||||+|+|+|..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999999875
No 276
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.28 E-value=2.9e-06 Score=74.98 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=50.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh---cchHHHHHHHHhCCCCCceEEEe
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVL 214 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~---~~~~~l~l~~~~~~~~~rti~Vl 214 (620)
....+.++|+||-. ..+.|...|.+..++|+.+|++|..+- +.++-..+...-.-.|.++++.-
T Consensus 63 gnvtiklwD~gGq~-------------rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 63 GNVTIKLWDLGGQP-------------RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred CceEEEEEecCCCc-------------cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 34577899999943 348889999999999988888776432 12222233333334589999999
Q ss_pred ccCCCCCC
Q 007054 215 TKLDLMDK 222 (620)
Q Consensus 215 tK~D~~~~ 222 (620)
||.|+-+.
T Consensus 130 nK~d~~~A 137 (186)
T KOG0075|consen 130 NKIDLPGA 137 (186)
T ss_pred ccccCccc
Confidence 99998754
No 277
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1e-05 Score=86.01 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...|.|-|+|.--.||+|||.+|=+..+-....|-.|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGIT------------------------------------------- 187 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGIT------------------------------------------- 187 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcc-------------------------------------------
Confidence 3678999999999999999999988776333333222
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
...=-+.+.-|.+..+||.||||- ..+..|=.+=..-.|.++|+ +++..++-.|
T Consensus 188 -----------QhIGAF~V~~p~G~~iTFLDTPGH-------------aAF~aMRaRGA~vtDIvVLV-VAadDGVmpQ- 241 (683)
T KOG1145|consen 188 -----------QHIGAFTVTLPSGKSITFLDTPGH-------------AAFSAMRARGANVTDIVVLV-VAADDGVMPQ- 241 (683)
T ss_pred -----------ceeceEEEecCCCCEEEEecCCcH-------------HHHHHHHhccCccccEEEEE-EEccCCccHh-
Confidence 111123356677899999999994 23344433444457867664 4555554333
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcH----HHHHhCCccccCC-CeeEEeeCChh
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNA----LDVLEGRSYRLQH-PWVGIVNRSQA 250 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~----~~~l~~~~~~l~l-g~~~v~~~s~~ 250 (620)
.++..+.....+.++|+.+||+|.- +.+. .+++........+ |-+.+++.|+.
T Consensus 242 T~EaIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 242 TLEAIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 2334444445568999999999954 4432 3333333322233 45666666654
No 278
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=7.7e-06 Score=87.57 Aligned_cols=155 Identities=17% Similarity=0.295 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|-|+|+|+--.||||||-+|=+.++-+...|--|--.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI----------------------------------------- 42 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI----------------------------------------- 42 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe-----------------------------------------
Confidence 579999999999999999999988877555444444110
Q ss_pred hhcCCCCCccCccEEEEEecC--CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~--~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
| -..+..+ ..+.++|+||||- +.+.+|=.+=.+=+|++||+| +++.++..|
T Consensus 43 ---G----------A~~v~~~~~~~~~itFiDTPGH-------------eAFt~mRaRGa~vtDIaILVV-a~dDGv~pQ 95 (509)
T COG0532 43 ---G----------AYQVPLDVIKIPGITFIDTPGH-------------EAFTAMRARGASVTDIAILVV-AADDGVMPQ 95 (509)
T ss_pred ---e----------eEEEEeccCCCceEEEEcCCcH-------------HHHHHHHhcCCccccEEEEEE-EccCCcchh
Confidence 1 0112222 4589999999993 223333222234578888755 555555333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc-H-HHHHhCCc----cccCCCeeEEeeCChhhhhccCCHHH
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN-A-LDVLEGRS----YRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~-~-~~~l~~~~----~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
.. .-...+...+.|+|+.+||+|+.+...+ . .++.+... +--...++++++.++.+++++.....
T Consensus 96 Ti-EAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 96 TI-EAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred HH-HHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 32 2333344557999999999999854332 1 12211111 11123456666666677776655543
No 279
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.25 E-value=4e-06 Score=91.21 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=44.4
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--------cchHHHHHHHHhCCCC
Q 007054 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTG 207 (620)
Q Consensus 136 ~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--------~~~~~l~l~~~~~~~~ 207 (620)
......++|+||||- .+.+.++ ..++..+|+.||+|++....+ .+.+.+.+++. .|
T Consensus 81 ~~~~~~i~liDtPGh------------~df~~~~-~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~---~g 144 (447)
T PLN00043 81 ETTKYYCTVIDAPGH------------RDFIKNM-ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT---LG 144 (447)
T ss_pred cCCCEEEEEEECCCH------------HHHHHHH-HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH---cC
Confidence 344568999999993 2344444 456789999988766543212 23344444443 34
Q ss_pred C-ceEEEeccCCCCC
Q 007054 208 E-RTFGVLTKLDLMD 221 (620)
Q Consensus 208 ~-rti~VltK~D~~~ 221 (620)
. +.|+++||+|+.+
T Consensus 145 i~~iIV~vNKmD~~~ 159 (447)
T PLN00043 145 VKQMICCCNKMDATT 159 (447)
T ss_pred CCcEEEEEEcccCCc
Confidence 5 5788999999873
No 280
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.23 E-value=2.8e-06 Score=88.81 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=64.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc-CcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~-lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+.+||-||+|||||+|+|++... -+.....||..|..-.+ ..++. . + +.+. .
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v-~v~d~-------------r---~----d~L~----~ 57 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV-NPSDP-------------R---L----DLLA----I 57 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE-Eechh-------------H---H----HHHH----H
Confidence 3789999999999999999999975 34456788877733111 11110 0 0 0000 0
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~ 186 (620)
.... ..-....+.++|.||+...+..|. ...+-..+.++.+|+++++|..
T Consensus 58 ~~~~-------------~~~~~a~i~~~DiaGlv~gAs~g~------Glgn~fL~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 58 YIKP-------------EKVPPTTTEFVDIAGLVGGASKGE------GLGNQFLANIREVDIIQHVVRC 107 (368)
T ss_pred HhCC-------------cCcCCceEEEEeccccccchhccc------CcchHHHHHHHhCCEEEEEEeC
Confidence 0000 000123578999999998765432 2345566788999999886643
No 281
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.22 E-value=5e-06 Score=82.13 Aligned_cols=38 Identities=32% Similarity=0.337 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC-CcCcccCc--ccccc
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR-DFLPRGSG--IVTRR 74 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~-~~lP~~~~--~~Tr~ 74 (620)
..-.|+|+|.+++|||+|+|.|+|. +.++.+.+ .||+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g 46 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG 46 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc
Confidence 3458999999999999999999998 23465554 55543
No 282
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.22 E-value=5.1e-06 Score=88.70 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=50.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||-.... +.....+..+. ..-+++.++|++ ++.. -+++...++.+......+-+|+||.|
T Consensus 182 ~~DvViIDTaGr~~~d-----~~lm~El~~i~--~~~~p~e~lLVl-da~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE-----DSLFEEMLQVA--EAIQPDNIIFVM-DGSI---GQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcch-----HHHHHHHHHHh--hhcCCcEEEEEe-cccc---ChhHHHHHHHHHhccCCcEEEEECcc
Confidence 4689999999965421 11222232222 123577776655 4543 34556677777655568899999999
Q ss_pred CCCCCCcHHHH
Q 007054 219 LMDKGTNALDV 229 (620)
Q Consensus 219 ~~~~~~~~~~~ 229 (620)
....+..+..+
T Consensus 251 ~~argG~aLs~ 261 (429)
T TIGR01425 251 GHAKGGGALSA 261 (429)
T ss_pred CCCCccHHhhh
Confidence 98877655554
No 283
>PRK13768 GTPase; Provisional
Probab=98.21 E-value=9.8e-06 Score=81.61 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=41.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC--CCeEEEEeccCCchh-----cchHHHHHHHHhCCCCCceEE
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQDI-----ATSDAMKLAREVDPTGERTFG 212 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~--~~~iil~V~~a~~d~-----~~~~~l~l~~~~~~~~~rti~ 212 (620)
.++.++|+||....... ......++ +++.. ++++++++ ++.... .....+.+..+. ..+.+.+.
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~~~~~~~-~~l~~~~~~~ii~li-D~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RESGRKLV-ERLSGSSKSVVVFLI-DAVLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hHHHHHHH-HHHHhcCCeEEEEEe-chHHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 48999999997653211 11122222 33333 66665544 443211 111122222222 34789999
Q ss_pred EeccCCCCCCCC
Q 007054 213 VLTKLDLMDKGT 224 (620)
Q Consensus 213 VltK~D~~~~~~ 224 (620)
|+||+|+.+...
T Consensus 168 v~nK~D~~~~~~ 179 (253)
T PRK13768 168 VLNKADLLSEEE 179 (253)
T ss_pred EEEhHhhcCchh
Confidence 999999987643
No 284
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=1.1e-06 Score=91.47 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=26.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccccccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p 75 (620)
+++|||-||+|||||||+|+|... ..+.++|
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 699999999999999999999976 4455555
No 285
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.17 E-value=6e-06 Score=74.24 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=93.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
--+++|+|+.-+||||||...+.-+| |--+ -||+=
T Consensus 8 qfrlivigdstvgkssll~~ft~gkf-aels-----dptvg--------------------------------------- 42 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTVG--------------------------------------- 42 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCccc---------------------------------------
Confidence 34889999999999999999998765 3111 11000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-h-cchH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~-~~~~ 195 (620)
.+|-...| ++.......|.|+||.| .+..++++++|.++.-.++++.+-.|.. + .-..
T Consensus 43 -----vdffarli--e~~pg~riklqlwdtag-------------qerfrsitksyyrnsvgvllvyditnr~sfehv~~ 102 (213)
T KOG0091|consen 43 -----VDFFARLI--ELRPGYRIKLQLWDTAG-------------QERFRSITKSYYRNSVGVLLVYDITNRESFEHVEN 102 (213)
T ss_pred -----hHHHHHHH--hcCCCcEEEEEEeeccc-------------hHHHHHHHHHHhhcccceEEEEeccchhhHHHHHH
Confidence 00000011 12222335788999999 3678999999999988887765544431 1 1123
Q ss_pred HHHHHHH-hC-CCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 196 AMKLARE-VD-PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 196 ~l~l~~~-~~-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
++.-|.. +. |...-..+|-+|+|+.....-..+-.+......+.-|+..+.+++.++++...++
T Consensus 103 w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 103 WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHH
Confidence 4443433 33 5555567889999998654321222222233456667888888877766555444
No 286
>PRK12740 elongation factor G; Reviewed
Probab=98.15 E-value=5.9e-06 Score=95.09 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=48.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
....++||||||..+ ....+..++..+|++++++++. .+. ......+.+.+...+.+.++|+||+
T Consensus 58 ~~~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllvvd~~-~~~-~~~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 58 KGHKINLIDTPGHVD-------------FTGEVERALRVLDGAVVVVCAV-GGV-EPQTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEEEeCC-CCc-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456899999999643 2334567788999998776544 344 2233345555555678999999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|....
T Consensus 123 D~~~~ 127 (668)
T PRK12740 123 DRAGA 127 (668)
T ss_pred CCCCC
Confidence 98753
No 287
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=9.7e-06 Score=84.79 Aligned_cols=90 Identities=20% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
.++.||||||-.... ...+.++ .+++ ..++.++|+ .+++. ..++....++.+.. -.-.=+|+||.
T Consensus 321 ~DvVLIDTaGRs~kd--------~~lm~EL-~~~lk~~~PdevlLV-LsATt--k~~d~~~i~~~F~~-~~idglI~TKL 387 (436)
T PRK11889 321 VDYILIDTAGKNYRA--------SETVEEM-IETMGQVEPDYICLT-LSASM--KSKDMIEIITNFKD-IHIDGIVFTKF 387 (436)
T ss_pred CCEEEEeCccccCcC--------HHHHHHH-HHHHhhcCCCeEEEE-ECCcc--ChHHHHHHHHHhcC-CCCCEEEEEcc
Confidence 589999999975421 1233333 2222 246666665 44432 14555667777766 35577899999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEE
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGI 244 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v 244 (620)
|....+..+.++... ..+.+.|++.
T Consensus 388 DET~k~G~iLni~~~--~~lPIsyit~ 412 (436)
T PRK11889 388 DETASSGELLKIPAV--SSAPIVLMTD 412 (436)
T ss_pred cCCCCccHHHHHHHH--HCcCEEEEeC
Confidence 999888777666542 2233445543
No 288
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.14 E-value=8e-06 Score=72.17 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=79.1
Q ss_pred cCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
+..|....++|++++|||||+-......| --++-.++..-..++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkir----------------------------------- 48 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIR----------------------------------- 48 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEE-----------------------------------
Confidence 34677888999999999999998877654 211111221111111
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc--hhc
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIA 192 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~--d~~ 192 (620)
.+.|.|. ...|.|+||.| .+..+.++..|.+.++.+|++.+-.|. -..
T Consensus 49 ----------------Tv~i~G~-~VkLqIwDtAG-------------qErFrtitstyyrgthgv~vVYDVTn~ESF~N 98 (198)
T KOG0079|consen 49 ----------------TVDINGD-RVKLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVYDVTNGESFNN 98 (198)
T ss_pred ----------------EeecCCc-EEEEEEeeccc-------------HHHHHHHHHHHccCCceEEEEEECcchhhhHh
Confidence 1112221 24688999999 377889999999999999887543332 122
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
...||+-++.-.+ ..+-++|-||.|..++.
T Consensus 99 v~rWLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 99 VKRWLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHHHHhcCc-cccceecccCCCCccce
Confidence 3456666665555 46779999999987654
No 289
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.12 E-value=4.9e-06 Score=74.58 Aligned_cols=119 Identities=19% Similarity=0.183 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
.-...|.++|+.++||||||-..+.-.|=| ...|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~---~~~~t------------------------------------------ 43 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD---LHPTT------------------------------------------ 43 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc---cCCce------------------------------------------
Confidence 345699999999999999999998876621 11110
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
-++.-.+-.+.+.+ +...|.|+||.| .+.++.++-+|.+.+..||++.+-...|--..-
T Consensus 44 -------IGvDFkvk~m~vdg-~~~KlaiWDTAG-------------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL 102 (209)
T KOG0080|consen 44 -------IGVDFKVKVMQVDG-KRLKLAIWDTAG-------------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKL 102 (209)
T ss_pred -------eeeeEEEEEEEEcC-ceEEEEEEeccc-------------hHhhhccCHhHhccCceeEEEEEccchhhHHhH
Confidence 01111111222333 235789999999 366788999999999999987644333211111
Q ss_pred HHHHHHHhCCCC----CceEEEeccCCCCC
Q 007054 196 AMKLAREVDPTG----ERTFGVLTKLDLMD 221 (620)
Q Consensus 196 ~l~l~~~~~~~~----~rti~VltK~D~~~ 221 (620)
-..+++++... .--++|-||+|.-.
T Consensus 103 -d~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 103 -DIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred -HHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 12456665432 23478999999653
No 290
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.12 E-value=5.1e-06 Score=76.44 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.|.+|++.|+.|+|||||+|.++..+|.- .| .
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-----------------------qy-------------------------k 39 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-----------------------QY-------------------------K 39 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-----------------------Hh-------------------------c
Confidence 57799999999999999999999887710 00 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEec-cCCchhcchH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS-PANQDIATSD 195 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~-~a~~d~~~~~ 195 (620)
. .-+..|-...+.+ . .....|.|+||.|- +..+++-..+.+.+||.+|+.. +....+.+-+
T Consensus 40 a--TIgadFltKev~V--d-~~~vtlQiWDTAGQ-------------ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 40 A--TIGADFLTKEVQV--D-DRSVTLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLE 101 (210)
T ss_pred c--ccchhheeeEEEE--c-CeEEEEEEEecccH-------------HHhhhcccceecCCceEEEEeecCChhhhccHH
Confidence 0 0112233333332 2 23457899999993 4556666778899999988632 1111121111
Q ss_pred -H-HHHHHHh---CCCCCceEEEeccCCCCCCCCcH-----HHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 196 -A-MKLAREV---DPTGERTFGVLTKLDLMDKGTNA-----LDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 196 -~-l~l~~~~---~~~~~rti~VltK~D~~~~~~~~-----~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+ -+++... +|..-|.|++-||+|.-...... .+-+.+ ....++|+..++..+.++..
T Consensus 102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~--s~gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 102 NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK--SKGNIPYFETSAKEATNVDE 168 (210)
T ss_pred HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH--hcCCceeEEecccccccHHH
Confidence 1 1244444 45667899999999986533211 111111 12246777776655544443
No 291
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.10 E-value=3.5e-06 Score=86.09 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcc
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~ 66 (620)
..+|+|||.+|+|||||+|+|+|....++
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 45899999999999999999999875333
No 292
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.09 E-value=1.3e-05 Score=86.06 Aligned_cols=119 Identities=20% Similarity=0.275 Sum_probs=77.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-+||+||+.|+|||||+-+|++..|.| .+..|.|-...
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i~I--------------------------------------- 47 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRILI--------------------------------------- 47 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccc---cccccCCcccc---------------------------------------
Confidence 499999999999999999999998622 12222220000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEe--cc-CCchhcchH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAI--SP-ANQDIATSD 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V--~~-a~~d~~~~~ 195 (620)
. . =..|.....++||++--. ..+..+.+-++++|+|.++- ++ .+.|--+..
T Consensus 48 -P--a----------dvtPe~vpt~ivD~ss~~-------------~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~ 101 (625)
T KOG1707|consen 48 -P--A----------DVTPENVPTSIVDTSSDS-------------DDRLCLRKEIRKADVICLVYAVDDESTVDRISTK 101 (625)
T ss_pred -C--C----------ccCcCcCceEEEeccccc-------------chhHHHHHHHhhcCEEEEEEecCChHHhhhhhhh
Confidence 0 0 023344558999998321 11344456678899886643 22 334555677
Q ss_pred HHHHHHHhC--CCCCceEEEeccCCCCCCCCc
Q 007054 196 AMKLAREVD--PTGERTFGVLTKLDLMDKGTN 225 (620)
Q Consensus 196 ~l~l~~~~~--~~~~rti~VltK~D~~~~~~~ 225 (620)
||-+.++.. ....|+|+|-||.|..+..+.
T Consensus 102 WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 102 WLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 888888875 335789999999999876553
No 293
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.08 E-value=3.9e-06 Score=86.22 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCc
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLP 65 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP 65 (620)
..+|+|||.+|+|||||+|+|+|.....
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~ 148 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAK 148 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccc
Confidence 3589999999999999999999987533
No 294
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.07 E-value=6.1e-06 Score=78.01 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
..+.++++|.+|+|||||+|+|++..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999999875
No 295
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.04 E-value=0.00031 Score=70.26 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+-+.|.|.|.||+|||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 5679999999999999999999753
No 296
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.03 E-value=3.8e-06 Score=80.84 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
-+|+++|-||+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 389999999999999999999864
No 297
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=2e-05 Score=74.44 Aligned_cols=71 Identities=21% Similarity=0.369 Sum_probs=45.2
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc---CCCeEEEEeccCCchhcchHHHHHH----HH--hCCCCCceE
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE---KPNSVILAISPANQDIATSDAMKLA----RE--VDPTGERTF 211 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~---~~~~iil~V~~a~~d~~~~~~l~l~----~~--~~~~~~rti 211 (620)
..+|||+||-.+ .+.-..+|++ .+-+|+++|+++..+-.-.+.-.+. -. ....+.+++
T Consensus 83 ~~~LVD~PGH~r-------------lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSR-------------LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHH-------------HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 379999999543 3444556665 6778888887766443223322221 11 134568899
Q ss_pred EEeccCCCCCCCC
Q 007054 212 GVLTKLDLMDKGT 224 (620)
Q Consensus 212 ~VltK~D~~~~~~ 224 (620)
+.+||-|+....+
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999986554
No 298
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=3.4e-05 Score=80.17 Aligned_cols=68 Identities=22% Similarity=0.367 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc--------hhcchHHHHHHHHhCCCCCce
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--------DIATSDAMKLAREVDPTGERT 210 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~--------d~~~~~~l~l~~~~~~~~~rt 210 (620)
...++|+|+||. .+.+.+|+.. ...+|+.||+|..... +-.+.+.+-+++.+. -...
T Consensus 84 k~~~tIiDaPGH------------rdFvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~l 148 (428)
T COG5256 84 KYNFTIIDAPGH------------RDFVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQL 148 (428)
T ss_pred CceEEEeeCCch------------HHHHHHhhcc-hhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceE
Confidence 358999999992 2456666644 3568888887654332 123445566777766 4789
Q ss_pred EEEeccCCCCC
Q 007054 211 FGVLTKLDLMD 221 (620)
Q Consensus 211 i~VltK~D~~~ 221 (620)
|+++||+|.++
T Consensus 149 IVavNKMD~v~ 159 (428)
T COG5256 149 IVAVNKMDLVS 159 (428)
T ss_pred EEEEEcccccc
Confidence 99999999996
No 299
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.01 E-value=1.7e-05 Score=79.41 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
..++++|.+|+|||||+|+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4899999999999999999999754
No 300
>PRK13796 GTPase YqeH; Provisional
Probab=98.01 E-value=6.6e-06 Score=87.31 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
..++|||.+|+|||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 379999999999999999999754
No 301
>PRK12289 GTPase RsgA; Reviewed
Probab=98.00 E-value=9.5e-06 Score=85.18 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.++|+|.+|+|||||||+|+|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 589999999999999999998754
No 302
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=3.1e-05 Score=73.13 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=79.7
Q ss_pred ccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHH
Q 007054 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (620)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (620)
.+..+..||++|++++|||-||...+.-.| .+-++.++-+.+..
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~t------------------------------- 53 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFAT------------------------------- 53 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEEe-------------------------------
Confidence 345788999999999999999999998877 22332221111111
Q ss_pred HHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-h-
Q 007054 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I- 191 (620)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~- 191 (620)
.. +.+.+ ......|+||.|- +..+.++-.|.+.+...+|+.+-.... +
T Consensus 54 --------------~t--~~vd~-k~vkaqIWDTAGQ-------------ERyrAitSaYYrgAvGAllVYDITr~~Tfe 103 (222)
T KOG0087|consen 54 --------------RT--VNVDG-KTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITRRQTFE 103 (222)
T ss_pred --------------ec--eeecC-cEEEEeeecccch-------------hhhccccchhhcccceeEEEEechhHHHHH
Confidence 01 11111 2245679999993 555778889999999887765432211 1
Q ss_pred cchHHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 192 ~~~~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
....||+-++.-.....++++|-||+|+..
T Consensus 104 nv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 104 NVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 234566666665555788999999999976
No 303
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.00 E-value=5.4e-06 Score=87.86 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
..|++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999864
No 304
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=2e-05 Score=89.45 Aligned_cols=170 Identities=21% Similarity=0.243 Sum_probs=86.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCC-------CCcceeeeecCCCCccCChHHHHHHHH
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED-------GSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (620)
.|++||.+|+||||++.-|.+.-. +.... -.+-+...+. ....|++....+.....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~------kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA------DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC------CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 678999999999999999998631 21110 0011111111 012223333222222334444444333
Q ss_pred HHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc
Q 007054 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (620)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~ 192 (620)
+. ...+++||||||...... ...+.+..+.. ...++-++|+ .+++..
T Consensus 260 ~~-----------------------~~~D~VLIDTAGRs~~d~-----~l~eel~~l~~--~~~p~e~~LV-LsAt~~-- 306 (767)
T PRK14723 260 AL-----------------------GDKHLVLIDTVGMSQRDR-----NVSEQIAMLCG--VGRPVRRLLL-LNAASH-- 306 (767)
T ss_pred Hh-----------------------cCCCEEEEeCCCCCccCH-----HHHHHHHHHhc--cCCCCeEEEE-ECCCCc--
Confidence 21 124799999999765321 12222222221 2345555554 455431
Q ss_pred chHHHHHHHHhCCCC--CceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhh
Q 007054 193 TSDAMKLAREVDPTG--ERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQAD 251 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~--~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~ 251 (620)
..+..++++.+.... ..+=+|+||.|....+..+.+++.. ..+.+-|++.-..-.+|
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~--~~lPI~yit~GQ~VPdD 365 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIR--HRLPVHYVSTGQKVPEH 365 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHH--HCCCeEEEecCCCChhh
Confidence 222333555554321 3567889999999888777776542 23334555543333333
No 305
>PRK12288 GTPase RsgA; Reviewed
Probab=97.98 E-value=2.1e-05 Score=82.50 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.++++|.+|+|||||||+|+|...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 589999999999999999999864
No 306
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=0.0001 Score=74.44 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=49.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHh-hcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSY-VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~y-i~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++.||||||-.... ...++++..-. .-+++.++|++ +++.. .++....++.+.. -...=+|+||.
T Consensus 154 ~~D~ViIDt~Gr~~~~--------~~~l~el~~~~~~~~~~~~~LVl-~a~~~--~~d~~~~~~~f~~-~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYRA--------SETVEEMIETMGQVEPDYICLTL-SASMK--SKDMIEIITNFKD-IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcCC--------HHHHHHHHHHHhhhCCCeEEEEE-cCccC--HHHHHHHHHHhCC-CCCCEEEEEee
Confidence 3689999999976421 12333332111 22466665544 44321 3566677777776 45667899999
Q ss_pred CCCCCCCcHHHHHh
Q 007054 218 DLMDKGTNALDVLE 231 (620)
Q Consensus 218 D~~~~~~~~~~~l~ 231 (620)
|.......+.++..
T Consensus 222 Det~~~G~~l~~~~ 235 (270)
T PRK06731 222 DETASSGELLKIPA 235 (270)
T ss_pred cCCCCccHHHHHHH
Confidence 99988776666543
No 307
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.95 E-value=6.1e-06 Score=87.31 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCccccccc
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p 75 (620)
+.-.|.+||-||+||||+||+|+|.+. .-||+.|
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~Kk-----VsVS~TP 346 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKK-----VSVSSTP 346 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCce-----eeeecCC
Confidence 345889999999999999999999986 4455555
No 308
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.94 E-value=1.8e-05 Score=78.74 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.9
Q ss_pred EEcCCCCCHHHHHHhhhCC
Q 007054 43 VVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 43 VvG~~ssGKSSllnaL~g~ 61 (620)
|+|.+||||||+..++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 7999999999999999875
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=1.5e-05 Score=83.81 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-.|+++|++|+||||++..|.+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999975
No 310
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=6e-05 Score=65.95 Aligned_cols=124 Identities=17% Similarity=0.269 Sum_probs=80.2
Q ss_pred cCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
|.-+..-+++|+.++|||.||...+...| ...||-.+-
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkf-------madcphtig----------------------------------- 45 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIG----------------------------------- 45 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccc-----------------------------------
Confidence 33556788999999999999999999877 334551111
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC--Cchhc
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA--NQDIA 192 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a--~~d~~ 192 (620)
..|-.. .+++++.. ..|.++||.| .+.++..+++|.+.+-..+++.+-. +.--.
T Consensus 46 --------vefgtr--iievsgqk-iklqiwdtag-------------qerfravtrsyyrgaagalmvyditrrstynh 101 (215)
T KOG0097|consen 46 --------VEFGTR--IIEVSGQK-IKLQIWDTAG-------------QERFRAVTRSYYRGAAGALMVYDITRRSTYNH 101 (215)
T ss_pred --------eeccee--EEEecCcE-EEEEEeeccc-------------HHHHHHHHHHHhccccceeEEEEehhhhhhhh
Confidence 111111 22344433 5788999999 3667889999999876664443221 11122
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~ 224 (620)
.+.|+.-++.+..-..-++++-||.|+-+...
T Consensus 102 lsswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 102 LSSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred HHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 45566667776544556778889999976553
No 311
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=8.2e-05 Score=66.18 Aligned_cols=123 Identities=22% Similarity=0.277 Sum_probs=81.9
Q ss_pred ccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHH
Q 007054 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (620)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (620)
.|.-|-.++|+|+.++|||.||...+...| --++. -|
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdss-HT----------------------------------------- 41 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSS-HT----------------------------------------- 41 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhh-ccccc-ce-----------------------------------------
Confidence 345788999999999999999999988765 10000 00
Q ss_pred HHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--h
Q 007054 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--I 191 (620)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~ 191 (620)
-+..|-...|.+ +-+...|.|+||.| .+.++..+++|.+.+-..+|+.+..+.| -
T Consensus 42 -------iGveFgSrIinV---GgK~vKLQIWDTAG-------------QErFRSVtRsYYRGAAGAlLVYD~Tsrdsfn 98 (214)
T KOG0086|consen 42 -------IGVEFGSRIVNV---GGKTVKLQIWDTAG-------------QERFRSVTRSYYRGAAGALLVYDITSRDSFN 98 (214)
T ss_pred -------eeeeecceeeee---cCcEEEEEEeeccc-------------HHHHHHHHHHHhccccceEEEEeccchhhHH
Confidence 011222222222 12335789999999 3678999999999977776765544433 2
Q ss_pred cchHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 192 ~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+...|+.=++.+.+...-+|++-||-|+-..
T Consensus 99 aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 99 ALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 2344666677777766667778899998654
No 312
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=6.8e-05 Score=78.31 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCC-------CcceeeeecCCCCccCChHHHHHH
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG-------SQEYAEFLHLPKRRFTDFSMVRKE 110 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~ 110 (620)
-..|+++|++|+||||++..|... +...+. .+.+...+.. ...|+.....+-....+..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~--------~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR--------TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC--------eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 346789999999999999999854 222221 0111121110 112222222121122344455444
Q ss_pred HHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCC
Q 007054 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPAN 188 (620)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~~~iil~V~~a~ 188 (620)
+..... ....++.||||||-.... ...+.++ ..+. -.++.++| |.+++
T Consensus 277 l~~l~~--------------------~~~~D~VLIDTAGr~~~d--------~~~l~EL-~~l~~~~~p~~~~L-VLsag 326 (407)
T PRK12726 277 VQYMTY--------------------VNCVDHILIDTVGRNYLA--------EESVSEI-SAYTDVVHPDLTCF-TFSSG 326 (407)
T ss_pred HHHHHh--------------------cCCCCEEEEECCCCCccC--------HHHHHHH-HHHhhccCCceEEE-ECCCc
Confidence 332210 013589999999976421 2233332 2222 24565545 44543
Q ss_pred chhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHh
Q 007054 189 QDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (620)
Q Consensus 189 ~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~ 231 (620)
. ..++....++.+.. -...-+|+||.|.......+.++..
T Consensus 327 ~--~~~d~~~i~~~f~~-l~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 M--KSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred c--cHHHHHHHHHhcCc-CCCCEEEEEcccCCCCccHHHHHHH
Confidence 2 23455556655554 3456788999999988777666543
No 313
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.90 E-value=1.1e-05 Score=74.59 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
..++++|..|+|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999854
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.90 E-value=2.2e-05 Score=77.29 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+-+.|.|.|.|++|||||+++|...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4569999999999999999999854
No 315
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.90 E-value=5.6e-05 Score=70.45 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
|.++++|..|||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 68899999999999999999876
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=97.88 E-value=2.6e-05 Score=81.26 Aligned_cols=81 Identities=31% Similarity=0.438 Sum_probs=51.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
.++.||||||...... +....++.+.+ .-+++.++|+ .++.. .++++..++.+...-.-.-+|+||.|.
T Consensus 223 ~DvVLIDTaGr~~~~~-----~lm~eL~~i~~--~~~pd~~iLV-l~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDA-----NLMDELKKIVR--VTKPDLVIFV-GDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcH-----HHHHHHHHHHH--hhCCceEEEe-ecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 5799999999875321 13333433332 2357877664 45543 356666677665544567899999999
Q ss_pred CCCCCcHHHHHh
Q 007054 220 MDKGTNALDVLE 231 (620)
Q Consensus 220 ~~~~~~~~~~l~ 231 (620)
...+.....+..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 988776666543
No 317
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.87 E-value=1.1e-05 Score=77.86 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=44.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||...... +..+.++++... + .++-++| |++++.. ++.+..+.........+=+|+||.|
T Consensus 83 ~~D~vlIDT~Gr~~~d~-----~~~~el~~~~~~-~-~~~~~~L-Vlsa~~~---~~~~~~~~~~~~~~~~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDE-----ELLEELKKLLEA-L-NPDEVHL-VLSATMG---QEDLEQALAFYEAFGIDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSSTHH-----HHHHHHHHHHHH-H-SSSEEEE-EEEGGGG---GHHHHHHHHHHHHSSTCEEEEESTT
T ss_pred CCCEEEEecCCcchhhH-----HHHHHHHHHhhh-c-CCccceE-EEecccC---hHHHHHHHHHhhcccCceEEEEeec
Confidence 36899999999765221 122333333222 2 5666655 4455442 2333333332222234567899999
Q ss_pred CCCCCCcHHHHHh
Q 007054 219 LMDKGTNALDVLE 231 (620)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (620)
.........+++.
T Consensus 152 et~~~G~~l~~~~ 164 (196)
T PF00448_consen 152 ETARLGALLSLAY 164 (196)
T ss_dssp SSSTTHHHHHHHH
T ss_pred CCCCcccceeHHH
Confidence 9887766666544
No 318
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.87 E-value=0.00023 Score=63.55 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH-HHHHhCCC----CCceEEEe
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK-LAREVDPT----GERTFGVL 214 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~-l~~~~~~~----~~rti~Vl 214 (620)
..|.|.||.|+...+ .++-+.|++-+|+.+|+.++++.. .-..+. +-+++|.. ..++++.-
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~e--Sf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPE--SFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHH--HHHHHHHHHHHHhhccccccccEEEEe
Confidence 468899999997632 567788999999999987765432 222222 34455542 35678889
Q ss_pred ccCCCCCCCC
Q 007054 215 TKLDLMDKGT 224 (620)
Q Consensus 215 tK~D~~~~~~ 224 (620)
||.|+.++.+
T Consensus 126 N~rdr~~p~~ 135 (198)
T KOG3883|consen 126 NKRDRAEPRE 135 (198)
T ss_pred chhhcccchh
Confidence 9999987654
No 319
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.86 E-value=0.00016 Score=66.60 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||+... ...++..+|.+|+++.|.-. ...++.....+ ..--++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~----------------~~~~~~~Ad~~ivv~tpe~~---D~y~~~k~~~~---~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS----------------EVDIASMADTTVVVMAPGAG---DDIQAIKAGIM---EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh----------------hhhHHHhCCEEEEEECCCch---hHHHHhhhhHh---hhcCEEEEeCCC
Confidence 479999999997531 12367789988887777622 22232222111 233489999998
No 320
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.85 E-value=5.2e-05 Score=73.13 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|..|+|||+|.-..++..|.+. ..++. .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~pti---------------e----------------------------- 37 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTI---------------E----------------------------- 37 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-cCCCc---------------c-----------------------------
Confidence 45899999999999999999998876321 11000 0
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
.+-..+ +.+. .....|.|+||+|-- ....|-..|+...+..+++..-.+. -+-..+.
T Consensus 38 ------d~y~k~--~~v~-~~~~~l~ilDt~g~~-------------~~~~~~~~~~~~~~gF~lVysitd~-~SF~~~~ 94 (196)
T KOG0395|consen 38 ------DSYRKE--LTVD-GEVCMLEILDTAGQE-------------EFSAMRDLYIRNGDGFLLVYSITDR-SSFEEAK 94 (196)
T ss_pred ------ccceEE--EEEC-CEEEEEEEEcCCCcc-------------cChHHHHHhhccCcEEEEEEECCCH-HHHHHHH
Confidence 000011 1122 234567899999921 2245566789999998776543221 1111121
Q ss_pred H----HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhh
Q 007054 198 K----LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (620)
Q Consensus 198 ~----l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~ 253 (620)
. +.+.-+....|+++|.||+|+........+-........+.+|+.+++....+++
T Consensus 95 ~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 95 QLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVD 154 (196)
T ss_pred HHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHH
Confidence 2 2222233446999999999998643221111111133455667777765554433
No 321
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.85 E-value=9.9e-05 Score=72.34 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc----chHHHHHHHHhCCCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA----TSDAMKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~----~~~~l~l~~~~~~~~~rti~Vlt 215 (620)
.+..||||||-+..-+=+.+- .-++..+...-.+|+.+|++....-. -+..+..+.-+-....|+|+|+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsG------sIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfN 189 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASG------SIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFN 189 (366)
T ss_pred cCEEEEcCCCceEEEEecCCc------cchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEe
Confidence 578999999965421111111 11233333445666666665432111 12334444445566789999999
Q ss_pred cCCCCCCC
Q 007054 216 KLDLMDKG 223 (620)
Q Consensus 216 K~D~~~~~ 223 (620)
|.|..+.+
T Consensus 190 K~Dv~d~~ 197 (366)
T KOG1532|consen 190 KTDVSDSE 197 (366)
T ss_pred cccccccH
Confidence 99999875
No 322
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.85 E-value=4.3e-05 Score=79.34 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=49.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHH---Hhhc-CCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR---SYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~---~yi~-~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~Vl 214 (620)
..++.||||||....... ..+.++.+.+ ..+. .++-++| |++++. .++++.-++.....-..+-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~~-----l~~eL~~~~~v~~~~~~~~p~~~~L-Vl~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTN-----LMEELKKIKRVIKKADPDAPHEVLL-VLDATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCHH-----HHHHHHHHHHHHhhhcCCCCceEEE-EEECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 468999999998653221 2233333221 2222 3565655 445553 3444445555544446678999
Q ss_pred ccCCCCCCCCcHHHHH
Q 007054 215 TKLDLMDKGTNALDVL 230 (620)
Q Consensus 215 tK~D~~~~~~~~~~~l 230 (620)
||.|....+..+.+++
T Consensus 267 TKlD~t~~~G~~l~~~ 282 (318)
T PRK10416 267 TKLDGTAKGGVVFAIA 282 (318)
T ss_pred ECCCCCCCccHHHHHH
Confidence 9999888777666654
No 323
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.0002 Score=76.71 Aligned_cols=93 Identities=17% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.+|||+|...... ...+.+..+. -...+.-.+|+ .+++.. .++..+.+..+.. -.-.=+|+||.|
T Consensus 269 ~~d~VLIDTaGrsqrd~-----~~~~~l~~l~--~~~~~~~~~LV-l~at~~--~~~~~~~~~~f~~-~~~~~~I~TKlD 337 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQ-----MLAEQIAMLS--QCGTQVKHLLL-LNATSS--GDTLDEVISAYQG-HGIHGCIITKVD 337 (420)
T ss_pred CCCEEEecCCCCCcchH-----HHHHHHHHHh--ccCCCceEEEE-EcCCCC--HHHHHHHHHHhcC-CCCCEEEEEeee
Confidence 35889999999875311 1222332221 11234445454 455432 2334445555554 345678999999
Q ss_pred CCCCCCcHHHHHhCCccccCCCeeEE
Q 007054 219 LMDKGTNALDVLEGRSYRLQHPWVGI 244 (620)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~l~lg~~~v 244 (620)
.......+.+++.. ..+.+-|+..
T Consensus 338 Et~~~G~~l~~~~~--~~lPi~yvt~ 361 (420)
T PRK14721 338 EAASLGIALDAVIR--RKLVLHYVTN 361 (420)
T ss_pred CCCCccHHHHHHHH--hCCCEEEEEC
Confidence 99887777666542 2233445443
No 324
>PRK00098 GTPase RsgA; Reviewed
Probab=97.80 E-value=6e-05 Score=77.86 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.++++|.+|+|||||+|+|+|...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 799999999999999999999753
No 325
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=5.7e-05 Score=82.08 Aligned_cols=94 Identities=26% Similarity=0.282 Sum_probs=48.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||...... ...+.+.. ..... ... . ++|++++.. ..+....++.+... ...-+|+||+|
T Consensus 428 ~~DLVLIDTaG~s~~D~-----~l~eeL~~-L~aa~-~~a-~-lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlD 495 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDR-----ALAAQLNW-LRAAR-QVT-S-LLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLD 495 (559)
T ss_pred cCCEEEecCCCcchhhH-----HHHHHHHH-HHHhh-cCC-c-EEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCc
Confidence 36899999999864211 11222221 12222 222 2 234444432 23333445544432 45679999999
Q ss_pred CCCCCCcHHHHHhCCccccCCCeeEEee
Q 007054 219 LMDKGTNALDVLEGRSYRLQHPWVGIVN 246 (620)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~l~lg~~~v~~ 246 (620)
........++++.. ..+.+-|++.-.
T Consensus 496 Et~~lG~aLsv~~~--~~LPI~yvt~GQ 521 (559)
T PRK12727 496 ETGRFGSALSVVVD--HQMPITWVTDGQ 521 (559)
T ss_pred CccchhHHHHHHHH--hCCCEEEEeCCC
Confidence 98776666666542 233444554333
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.78 E-value=8.3e-05 Score=69.03 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
..+++++|.+|+||||++|+|.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45899999999999999999998653
No 327
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00014 Score=77.19 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
..++.||||||...... ...+.+..+.. .+. .+.-.+| |.+++.+ ..+....++.... -...=+|+||
T Consensus 299 ~~D~VLIDTaGr~~rd~-----~~l~eL~~~~~-~~~~~~~~e~~L-VLsAt~~--~~~~~~~~~~f~~-~~~~glIlTK 368 (432)
T PRK12724 299 GSELILIDTAGYSHRNL-----EQLERMQSFYS-CFGEKDSVENLL-VLSSTSS--YHHTLTVLKAYES-LNYRRILLTK 368 (432)
T ss_pred CCCEEEEeCCCCCccCH-----HHHHHHHHHHH-hhcCCCCCeEEE-EEeCCCC--HHHHHHHHHHhcC-CCCCEEEEEc
Confidence 46889999999864221 12222322222 221 2334445 4455442 2334445555533 3567789999
Q ss_pred CCCCCCCCcHHHHHh
Q 007054 217 LDLMDKGTNALDVLE 231 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~ 231 (620)
.|....+..+..++.
T Consensus 369 LDEt~~~G~il~i~~ 383 (432)
T PRK12724 369 LDEADFLGSFLELAD 383 (432)
T ss_pred ccCCCCccHHHHHHH
Confidence 999988777666643
No 328
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.76 E-value=0.00026 Score=76.46 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
.++.||||||...... .....+..++.. ...+.-+.| |.+++.. ..+..+.++.+...+ ..-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~-~~~~~~~~L-Vl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDK-----RLIEELKALIEF-SGEPIDVYL-VLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCCH-----HHHHHHHHHHhc-cCCCCeEEE-EEECCCC--HHHHHHHHHHhCCCC-CCEEEEecccc
Confidence 6899999999864221 122334444431 223444444 4555432 233444556665543 34688999999
Q ss_pred CCCCCcHHHHHh
Q 007054 220 MDKGTNALDVLE 231 (620)
Q Consensus 220 ~~~~~~~~~~l~ 231 (620)
........+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 877666666544
No 329
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00014 Score=82.42 Aligned_cols=136 Identities=16% Similarity=0.235 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
....|.|+|+--+|||||.++|+=.. |..++ +-++. .+..+.|+.+...+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~-----------------~g~~~~D~~e~Eqe------ 58 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH-----------------DGAATMDWMEQEQE------ 58 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc-----------------CCCccCCCcHHHHh------
Confidence 56789999999999999999998321 22222 10000 01122333222211
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.+-.+....+.+...+ ...++||||||-.+.. .-+.+.++-.|..+++ +++..+...|..
T Consensus 59 ----RGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt-------------~EV~rslrvlDgavvV-vdaveGV~~QTE 118 (697)
T COG0480 59 ----RGITITSAATTLFWKG--DYRINLIDTPGHVDFT-------------IEVERSLRVLDGAVVV-VDAVEGVEPQTE 118 (697)
T ss_pred ----cCCEEeeeeeEEEEcC--ceEEEEeCCCCccccH-------------HHHHHHHHhhcceEEE-EECCCCeeecHH
Confidence 1222333444433222 4689999999977632 2244556677877654 456666655544
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.+.++++..+.|.|+++||+|.+-..
T Consensus 119 -tv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 119 -TVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred -HHHHHHhhcCCCeEEEEECccccccC
Confidence 47788888899999999999998543
No 330
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.73 E-value=0.00011 Score=72.42 Aligned_cols=120 Identities=19% Similarity=0.306 Sum_probs=68.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCc--ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
+|+++|..+|||||..+.|.+. ..|.+.. ..|..+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~v------------------------------------------ 37 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDV------------------------------------------ 37 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SE------------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCc------------------------------------------
Confidence 5899999999999999999986 3354432 112111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc----
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---- 193 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~---- 193 (620)
-.-.+.......+.++|.||-...-.. .....-....++..++|+|++..+.++..
T Consensus 38 ------------e~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 38 ------------EKSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp ------------EEEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTESEEEEEEETT-STCHHHHHH
T ss_pred ------------eEEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccCEEEEEEEcccccHHHHHHH
Confidence 011233344568999999997642211 00011122357788887766544344321
Q ss_pred -hHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 194 -~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
...+..+.+..| +....+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 223455677777 57889999999998644
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.72 E-value=0.00013 Score=74.98 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5899999999999999999999864
No 332
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.70 E-value=0.00018 Score=77.68 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=49.6
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
++.||||||-.... ++..+.+..+. .+-.++.++|++. +.. .++++..++.+...-..+-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l~--~~~~pdevlLVvd-a~~---gq~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEIK--EAVKPDEVLLVID-ATI---GQQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHHH--HHhcccceeEEEe-ccc---cHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 89999999976421 11222222221 2335777766554 444 3567777777765445567899999998
Q ss_pred CCCCcHHHHH
Q 007054 221 DKGTNALDVL 230 (620)
Q Consensus 221 ~~~~~~~~~l 230 (620)
..+..+..+.
T Consensus 246 a~~G~~ls~~ 255 (437)
T PRK00771 246 AKGGGALSAV 255 (437)
T ss_pred CcccHHHHHH
Confidence 8877666653
No 333
>PTZ00099 rab6; Provisional
Probab=97.69 E-value=0.00013 Score=69.28 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=67.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l~l~~~~~~~~~rti~VltK 216 (620)
...+.|+||||.. ....+...|++.+|++|++++..+.. +.. ..++..+........++|+|.||
T Consensus 28 ~v~l~iwDt~G~e-------------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQE-------------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChH-------------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 3578999999953 23456778899999998877654421 211 12333333333335678999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHHHHHH
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~~~~e 265 (620)
+|+.+......+.........+..|+.+++..+.++.+.+..+.....+
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9996432111111111112234457778888888877776666554444
No 334
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.65 E-value=0.00095 Score=67.88 Aligned_cols=84 Identities=24% Similarity=0.329 Sum_probs=48.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHH---Hhh-cCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR---SYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~---~yi-~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~Vl 214 (620)
..++.||||||..... ....+.++.+.. ..+ ..++-++|++ +++. .++++..+......-...-+|+
T Consensus 154 ~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl-~a~~---~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVL-DATT---GQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEE-ECCC---CHHHHHHHHHHHhhCCCCEEEE
Confidence 4689999999986521 112223333221 111 1367776655 4443 3445455555443334678999
Q ss_pred ccCCCCCCCCcHHHHHh
Q 007054 215 TKLDLMDKGTNALDVLE 231 (620)
Q Consensus 215 tK~D~~~~~~~~~~~l~ 231 (620)
||+|.........++..
T Consensus 225 TKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAY 241 (272)
T ss_pred EccCCCCCccHHHHHHH
Confidence 99999888776666543
No 335
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00021 Score=70.75 Aligned_cols=130 Identities=17% Similarity=0.318 Sum_probs=82.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
.|..||....||+||--||++.-. -.+ ...+.+++++.+..++.
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la-~~~------------------------------~~~~~~y~~id~aPeEk----- 57 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLA-KKG------------------------------GAEAKAYDQIDNAPEEK----- 57 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHHH-hhc------------------------------cccccchhhhccCchHh-----
Confidence 689999999999999999997511 111 11222333333332222
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cchHHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMK 198 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~~~~l~ 198 (620)
..+++-+.-+++.... ..++..||.||- .+.+++|+-...+ .|..||+|.++.... .+.+.+-
T Consensus 58 --~rGITIntahveyet~-~rhyahVDcPGH------------aDYvKNMItgAaq-mDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 58 --ARGITINTAHVEYETA-NRHYAHVDCPGH------------ADYVKNMITGAAQ-MDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred --hcCceeccceeEEecC-CceEEeccCCCh------------HHHHHHHhhhHHh-cCccEEEEEcCCCCCCcchhhhh
Confidence 1234444445554443 468999999993 4677888877654 455557676554433 3455666
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCC
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+++++.- .++++.+||+|+++..
T Consensus 122 larqvGv--p~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQVGV--PYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhcCC--cEEEEEEecccccCcH
Confidence 8887752 4788889999999844
No 336
>PRK10867 signal recognition particle protein; Provisional
Probab=97.63 E-value=0.00032 Score=75.55 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||-.... +.....+..+. ..+ .++-++|++. +.. .+++...++.+...-..+-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~~d-----~~lm~eL~~i~-~~v-~p~evllVld-a~~---gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHID-----EELMDELKAIK-AAV-NPDEILLVVD-AMT---GQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccC-----HHHHHHHHHHH-Hhh-CCCeEEEEEe-ccc---HHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4689999999976421 11222222222 222 5666656554 432 46777778777654456788999999
Q ss_pred CCCCCCcHHHHH
Q 007054 219 LMDKGTNALDVL 230 (620)
Q Consensus 219 ~~~~~~~~~~~l 230 (620)
....+..+..+.
T Consensus 252 ~~~rgG~alsi~ 263 (433)
T PRK10867 252 GDARGGAALSIR 263 (433)
T ss_pred CcccccHHHHHH
Confidence 877666555543
No 337
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00018 Score=66.73 Aligned_cols=146 Identities=17% Similarity=0.283 Sum_probs=87.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-+|+++|=-+|||||+|.-|---++ +|..||
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~-------vttvPT------------------------------------------ 48 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEI-------VTTVPT------------------------------------------ 48 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCc-------ccCCCc------------------------------------------
Confidence 3999999999999999998865543 333551
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH--
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA-- 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~-- 196 (620)
.+|.-..+.+. ...++++|.-|-.+ ++.+.+.|.++.+.+|++|+++..+- -+++
T Consensus 49 ----iGfnVE~v~yk-----n~~f~vWDvGGq~k-------------~R~lW~~Y~~~t~~lIfVvDS~Dr~R-i~eak~ 105 (181)
T KOG0070|consen 49 ----IGFNVETVEYK-----NISFTVWDVGGQEK-------------LRPLWKHYFQNTQGLIFVVDSSDRER-IEEAKE 105 (181)
T ss_pred ----cccceeEEEEc-----ceEEEEEecCCCcc-------------cccchhhhccCCcEEEEEEeCCcHHH-HHHHHH
Confidence 22332222221 56899999998533 36678899999999988877665432 2222
Q ss_pred --HHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCCccccCCCee--EEeeCChhhhhccCC
Q 007054 197 --MKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWV--GIVNRSQADINRNID 257 (620)
Q Consensus 197 --l~l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~lg~~--~v~~~s~~~~~~~~~ 257 (620)
.++...-+..+.++++.-||.|+-..-+ +..+.+.-.... ...|+ +..+.++.++.+..+
T Consensus 106 eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~egl~ 171 (181)
T KOG0070|consen 106 ELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEGLD 171 (181)
T ss_pred HHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccC-CCCcEEeeccccccccHHHHHH
Confidence 1223333335788999999999865432 222222211111 24554 445556655544443
No 338
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=2.5e-05 Score=69.94 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=59.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc--hhcchHHHHHHHHhC-CCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVD-PTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~--d~~~~~~l~l~~~~~-~~~~rti~VltK 216 (620)
.+|.|+||.| .+..++++..|.+.+=..+|+.+-.+. -+....|+.-.+.-. -...-++++-||
T Consensus 67 ihLQlWDTAG-------------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 67 IHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEEeeecccc-------------HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCc
Confidence 4789999999 367788999999988777665533221 111222222222111 123557888999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhh
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~ 253 (620)
+|+.+...-..+-........+++|+..++-.+.++.
T Consensus 134 ~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~ 170 (219)
T KOG0081|consen 134 ADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVE 170 (219)
T ss_pred cchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHH
Confidence 9998754321222222234567888877766655443
No 339
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.60 E-value=0.00021 Score=67.59 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.|+||||..... .+....+..+. ....++.+++++.+ .. ..+.++.+..+.....-.-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~--~~~~~~~~~lVv~~-~~---~~~~~~~~~~~~~~~~~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKIK--RVVKPDEVLLVVDA-MT---GQDAVNQAKAFNEALGITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHHH--hhcCCCeEEEEEEC-CC---ChHHHHHHHHHHhhCCCCEEEEECCc
Confidence 4678999999976421 11222232222 12347777776654 32 33444555554322235788899999
Q ss_pred CCCCCCcHHHH
Q 007054 219 LMDKGTNALDV 229 (620)
Q Consensus 219 ~~~~~~~~~~~ 229 (620)
.........++
T Consensus 151 ~~~~~g~~~~~ 161 (173)
T cd03115 151 GDARGGAALSI 161 (173)
T ss_pred CCCCcchhhhh
Confidence 98877655543
No 340
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00022 Score=76.19 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
++..+.||-.--.|||||...|+... | |.-+ + ...+.+.|--++ +
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~------~-------------~~q~q~LDkl~v--------E 103 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDN------N-------------IGQEQVLDKLQV--------E 103 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCC------C-------------Cchhhhhhhhhh--------h
Confidence 45578999999999999999998652 1 1111 0 001111111111 1
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+..| -.+....-.+........-|.||||||-.+.... +.+-+.-++.+||+| +|+.+...|..
T Consensus 104 RERG--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLvV-DA~qGvqAQT~ 167 (650)
T KOG0462|consen 104 RERG--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLVV-DASQGVQAQTV 167 (650)
T ss_pred hhcC--cEEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEEE-EcCcCchHHHH
Confidence 2222 2222233333233323356899999998764322 333445678887755 56667766665
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+...+ ..+-..|.|+||+|+-..
T Consensus 168 anf~lAf-e~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 168 ANFYLAF-EAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHHH-HcCCeEEEeeeccCCCCC
Confidence 4443333 347899999999998643
No 341
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00069 Score=72.02 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||..... .. ....+..+... ...+.-++| |.+|+.. ..+..+....+.+. ..+=+|+||.|
T Consensus 254 ~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~-~~~~~e~~L-Vlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKD----FM-KLAEMKELLNA-CGRDAEFHL-AVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccC----HH-HHHHHHHHHHh-cCCCCeEEE-EEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEecc
Confidence 3689999999976421 00 11122222222 222323445 5556543 23333455555432 35678999999
Q ss_pred CCCCCCcHHHHHhCCccccCCCeeEEee
Q 007054 219 LMDKGTNALDVLEGRSYRLQHPWVGIVN 246 (620)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~l~lg~~~v~~ 246 (620)
....+..+.+++.. ..+.+-|++.-.
T Consensus 324 et~~~G~~l~~~~~--~~~Pi~yit~Gq 349 (388)
T PRK12723 324 ETTCVGNLISLIYE--MRKEVSYVTDGQ 349 (388)
T ss_pred CCCcchHHHHHHHH--HCCCEEEEeCCC
Confidence 99888777766542 223344554433
No 342
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.53 E-value=0.00066 Score=80.15 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
.|.++|+||||.. ....+...+...+|+++|++. ++.++..+ ....+..+...+.++|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe-------------~F~~lr~~g~~~aDivlLVVD-a~~Gi~~q-T~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHE-------------AFTSLRKRGGSLADLAVLVVD-INEGFKPQ-TIEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcH-------------HHHHHHHhhcccCCEEEEEEE-CcccCCHh-HHHHHHHHHHcCCCEEEEEECCC
Confidence 5789999999942 223444556778998877664 44444222 22233334445689999999999
Q ss_pred CCC
Q 007054 219 LMD 221 (620)
Q Consensus 219 ~~~ 221 (620)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 343
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.51 E-value=0.00033 Score=75.37 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=50.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||..... +.....+..+.. .-.++-++|++. +.. .+++...++.+...-.-+=+|+||+|
T Consensus 182 ~~DvVIIDTaGr~~~d-----~~l~~eL~~i~~--~~~p~e~lLVvd-a~t---gq~~~~~a~~f~~~v~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID-----EELMEELAAIKE--ILNPDEILLVVD-AMT---GQDAVNTAKTFNERLGLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccccC-----HHHHHHHHHHHH--hhCCceEEEEEe-ccc---hHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 3689999999975421 112333333322 335777766554 442 46777788777654456778899999
Q ss_pred CCCCCCcHHHHH
Q 007054 219 LMDKGTNALDVL 230 (620)
Q Consensus 219 ~~~~~~~~~~~l 230 (620)
....+..+..+.
T Consensus 251 ~~~~~G~~lsi~ 262 (428)
T TIGR00959 251 GDARGGAALSVR 262 (428)
T ss_pred CcccccHHHHHH
Confidence 877666555543
No 344
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.51 E-value=3.1e-05 Score=70.70 Aligned_cols=68 Identities=22% Similarity=0.343 Sum_probs=44.4
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH-HHHHHHhC--CCCCceEEEeccC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA-MKLAREVD--PTGERTFGVLTKL 217 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~-l~l~~~~~--~~~~rti~VltK~ 217 (620)
.+.++||.|- +.+..+++.|.+.+.+-+|+.. ..|-..-++ +.+-+++. -...||++|-||+
T Consensus 70 r~mlWdtagq-------------eEfDaItkAyyrgaqa~vLVFS--TTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 70 RSMLWDTAGQ-------------EEFDAITKAYYRGAQASVLVFS--TTDRYSFEATLEWYNKVQKETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHhccc-------------hhHHHHHHHHhccccceEEEEe--cccHHHHHHHHHHHHHHHHHhccCCeEEeeccc
Confidence 4568899882 5567788999999888877653 223222222 22223332 1257999999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|+++..
T Consensus 135 Dlveds 140 (246)
T KOG4252|consen 135 DLVEDS 140 (246)
T ss_pred hhhHhh
Confidence 999754
No 345
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.50 E-value=0.00024 Score=74.47 Aligned_cols=134 Identities=17% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
++..|+||-.--.||+||+.+|+...--=+..+-++ ....|-.++.+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--------------------------ERvMDSnDlEk------- 50 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--------------------------ERVMDSNDLEK------- 50 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchh--------------------------hhhcCccchhh-------
Confidence 577899999999999999999997642000000000 11112222211
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
..| -.+-..--. -.++...+.||||||--+.... +.+-++--|.++|+|++....+ .|.-
T Consensus 51 -ERG--ITILaKnTa---v~~~~~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVDA~EGpM-PQTr 110 (603)
T COG1217 51 -ERG--ITILAKNTA---VNYNGTRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVDASEGPM-PQTR 110 (603)
T ss_pred -hcC--cEEEeccce---eecCCeEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEEcccCCC-Cchh
Confidence 112 001011111 1234578999999997654322 2333444588888777655444 4444
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~ 224 (620)
+ ..+..-..|-+-|+|+||+|.-+...
T Consensus 111 F-VlkKAl~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 111 F-VLKKALALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred h-hHHHHHHcCCCcEEEEeCCCCCCCCH
Confidence 3 34444455889999999999876543
No 346
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.49 E-value=0.00026 Score=71.57 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..+++|..|+|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 7899999999999999999985
No 347
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.47 E-value=9.3e-05 Score=72.27 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.|+++|.+|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999865
No 348
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.47 E-value=0.00068 Score=65.68 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.++||||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999975
No 349
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00025 Score=69.51 Aligned_cols=134 Identities=22% Similarity=0.321 Sum_probs=82.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
..|.-||..|-|||||++.|....| ++.+|+..--.+.|...
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~----------------------------------- 84 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN----------------------------------- 84 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc-----------------------------------
Confidence 3799999999999999999999876 23333321111111110
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCcccc-CCCCccHHHHHHHHHHHhhcC---------------CCeEEE
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAV-EGQPDTIVEDIESMVRSYVEK---------------PNSVIL 182 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~-~~q~~~~~~~~~~~~~~yi~~---------------~~~iil 182 (620)
+..+- .+.....|++|||-|+++--. .+.-.-+.+.+......|+++ -++.+.
T Consensus 85 ---Tyelq--------EsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLY 153 (406)
T KOG3859|consen 85 ---TYELQ--------ESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLY 153 (406)
T ss_pred ---hhhhh--------hcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 00000 111235789999999987322 222233666666666666543 255566
Q ss_pred EeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 183 ~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
++.|....+ .+-.+-..+.+|. ...+|-|+-|.|.+...
T Consensus 154 FI~PTGH~L-KslDLvtmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 154 FISPTGHSL-KSLDLVTMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred EecCCCcch-hHHHHHHHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 777777666 3333445677775 57899999999998643
No 350
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00035 Score=63.96 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=67.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhcchH--HHHHHHHhCCCCCceEEEec
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIATSD--AMKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~~~~--~l~l~~~~~~~~~rti~Vlt 215 (620)
...+.++|+-| .+..+++...|...++.||.++++.+. .+..+. --.+...=.-.|.|.+...|
T Consensus 68 ~~~l~fwdlgG-------------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGG-------------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCC-------------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 35789999988 356788999999999999988877662 222221 12233333455899999999
Q ss_pred cCCCCCCCC--cHHHHHh-CCc-cccCCCeeEEeeCChhhhhccCCHHH
Q 007054 216 KLDLMDKGT--NALDVLE-GRS-YRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 216 K~D~~~~~~--~~~~~l~-~~~-~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
|-|+-+.-+ +...++. .+. ..-...+-+|+...++++++.+....
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v 183 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLV 183 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHH
Confidence 999865432 1111221 111 22235566676666666666555443
No 351
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00097 Score=73.47 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-|-++|+|.--+||+-||..|-|.++---..|..|- .-+..|.+...++.. +.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitq----------------------qIgAt~fp~~ni~e~----tk 527 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQ----------------------QIGATYFPAENIREK----TK 527 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceee----------------------eccccccchHHHHHH----HH
Confidence 5699999999999999999999998763222333331 112333444444333 32
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.+...++ .....|.+.+|||||- +.+.++-.+...-+|..||+|+-. .++..+.
T Consensus 528 ~~~~~~K-----------~~~kvPg~lvIdtpgh-------------EsFtnlRsrgsslC~~aIlvvdIm-hGlepqt- 581 (1064)
T KOG1144|consen 528 ELKKDAK-----------KRLKVPGLLVIDTPGH-------------ESFTNLRSRGSSLCDLAILVVDIM-HGLEPQT- 581 (1064)
T ss_pred HHHhhhh-----------hhcCCCeeEEecCCCc-------------hhhhhhhhccccccceEEEEeehh-ccCCcch-
Confidence 2222111 1234689999999993 334455555667799998876543 4454443
Q ss_pred HHHHHHhCCCCCceEEEeccCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
+.-+..+.....+.|+.|||+|.+
T Consensus 582 iESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 582 IESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hHHHHHHHhcCCCeEEeehhhhhh
Confidence 233344445568999999999986
No 352
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00035 Score=75.44 Aligned_cols=113 Identities=15% Similarity=0.229 Sum_probs=62.9
Q ss_pred CccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--------cchH
Q 007054 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSD 195 (620)
Q Consensus 124 ~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--------~~~~ 195 (620)
||+.+.-.-.+ .++-..+||+|.||..+ .+.+|+.. +..+|..||||+.....+ .+.+
T Consensus 240 GvTm~v~~~~f-es~~~~~tliDaPGhkd------------Fi~nmi~g-~sqaD~avLvvd~s~~~FE~gfd~~gQtrE 305 (603)
T KOG0458|consen 240 GVTMDVKTTWF-ESKSKIVTLIDAPGHKD------------FIPNMISG-ASQADVAVLVVDASTGEFESGFDPGGQTRE 305 (603)
T ss_pred ceeEEeeeEEE-ecCceeEEEecCCCccc------------cchhhhcc-ccccceEEEEEECCcchhhhccCCCCchHH
Confidence 45544333333 35667899999999432 33444433 345788888776543222 1233
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCC----------ccccCCCeeEEeeCChhhh
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGR----------SYRLQHPWVGIVNRSQADI 252 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~----------~~~l~lg~~~v~~~s~~~~ 252 (620)
...+++.+. -...|+++||+|+++=..+-.+.+.++ ...-.+.|+++...++.++
T Consensus 306 ha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 306 HALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred HHHHHHHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 445666665 367899999999996332211212111 1122346777776666554
No 353
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.33 E-value=0.00023 Score=71.43 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.-+.+.|||-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 45799999999999999999987553
No 354
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.32 E-value=0.0014 Score=79.86 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCccc
Q 007054 7 LIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (620)
Q Consensus 7 l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~ 67 (620)
+..+..++.++...++...... ..-.-.||=-+|+|+++|||||+|+.- |.+| |-.
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~~---~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLGG---RRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHhhccccC---chhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 4456788888888887543100 011248999999999999999999988 7764 543
No 355
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00066 Score=72.42 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=45.6
Q ss_pred ecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCC-CceEEE
Q 007054 135 YSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGV 213 (620)
Q Consensus 135 ~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~-~rti~V 213 (620)
.+.....+|+...|. + +...+ ...+-+|.++| ..++|.++.-. .+.++.-+.+.| .|++||
T Consensus 108 vsgK~RRiTflEcp~--D---------l~~mi-----DvaKIaDLVlL-lIdgnfGfEME-TmEFLnil~~HGmPrvlgV 169 (1077)
T COG5192 108 VSGKTRRITFLECPS--D---------LHQMI-----DVAKIADLVLL-LIDGNFGFEME-TMEFLNILISHGMPRVLGV 169 (1077)
T ss_pred eecceeEEEEEeChH--H---------HHHHH-----hHHHhhheeEE-EeccccCceeh-HHHHHHHHhhcCCCceEEE
Confidence 344557889999884 1 11111 12234787755 55778877444 344555565655 678999
Q ss_pred eccCCCCCCCC
Q 007054 214 LTKLDLMDKGT 224 (620)
Q Consensus 214 ltK~D~~~~~~ 224 (620)
+|..|+....+
T Consensus 170 ~ThlDlfk~~s 180 (1077)
T COG5192 170 VTHLDLFKNPS 180 (1077)
T ss_pred EeecccccChH
Confidence 99999987654
No 356
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=97.29 E-value=0.24 Score=53.51 Aligned_cols=27 Identities=48% Similarity=0.758 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
+--.|+|.|+||+|||||||-|.|.+|
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccCh
Confidence 456899999999999999999999987
No 357
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0013 Score=71.73 Aligned_cols=134 Identities=16% Similarity=0.301 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
....|+++|.-.+|||+|+..|.+... |..+ .+++..++-++.. - .+
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~l-------------------~--------~E 173 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDTL-------------------F--------YE 173 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-cccc-----ccccccccccccc-------------------h--------hh
Confidence 344789999999999999999999864 4332 1212221111110 0 00
Q ss_pred hhcCCCCCccCccEEEEEecCCC--CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNV--VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~--~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
. ..+..+-..++.+-..+.+. .-++++||||-.... .+++ ..++-.|.++|+|+.+. +..-.
T Consensus 174 ~--eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~------------DE~t-a~l~~sDgvVlvvDv~E-GVmln 237 (971)
T KOG0468|consen 174 Q--ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS------------DETT-ASLRLSDGVVLVVDVAE-GVMLN 237 (971)
T ss_pred H--hcCceEeecceEEEEecCcCceeeeeeecCCCcccch------------HHHH-HHhhhcceEEEEEEccc-Cceee
Confidence 0 12233334455554444443 357899999976522 2222 34567898888776554 33222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
.. ++++..-....++++|+||+|.+
T Consensus 238 tE-r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 238 TE-RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HH-HHHHHHHhccCcEEEEEehhHHH
Confidence 22 35666666679999999999975
No 358
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.0043 Score=67.62 Aligned_cols=99 Identities=24% Similarity=0.261 Sum_probs=51.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
.++.+|||+|...... ...+.. .+..... .+.-.+| |.+++.+. .+..+.++.+... ..+-+|+||.|.
T Consensus 335 ~d~VLIDTaGr~~~d~-----~~~e~~-~~l~~~~-~p~e~~L-VLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-----MVSEQI-AMLHGAG-APVKRLL-LLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhhH-----HHHHHH-HHHhccC-CCCeeEE-EEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 4789999999764210 011111 1111111 1333444 44554322 3333455656553 456778999999
Q ss_pred CCCCCcHHHHHhCCccccCCCeeEEeeCChhh
Q 007054 220 MDKGTNALDVLEGRSYRLQHPWVGIVNRSQAD 251 (620)
Q Consensus 220 ~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~ 251 (620)
......+.+++.. ..+.+-|++.-.+-.+|
T Consensus 404 t~~~G~~l~i~~~--~~lPI~yvt~GQ~VPeD 433 (484)
T PRK06995 404 AASLGGALDVVIR--YKLPLHYVSNGQRVPED 433 (484)
T ss_pred cccchHHHHHHHH--HCCCeEEEecCCCChhh
Confidence 8887777776542 23345555544433333
No 359
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0009 Score=68.23 Aligned_cols=146 Identities=26% Similarity=0.388 Sum_probs=77.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc----ccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV----TRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~----Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
+++|+|.--+|||||+--|+.-. |-.|.|-. -|.|-+++-.++..-+-+. .......+..+..+.+. .
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~ev--lGFd~~g~vVNY~~~~t-----a 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEV--LGFDNRGKVVNYAQNMT-----A 240 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhc--ccccccccccchhhccc-----H
Confidence 89999999999999999988664 44444422 2444444433322211100 00011111111111100 0
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--hcc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~~~ 193 (620)
+. |....-.-+|++|+.|-.+.-. ..+.. ...| .||+..|+| +|+.+ +.+
T Consensus 241 EE----------------i~e~SSKlvTfiDLAGh~kY~~--------TTi~g-LtgY--~Ph~A~LvV-sA~~Gi~~tT 292 (591)
T KOG1143|consen 241 EE----------------IVEKSSKLVTFIDLAGHAKYQK--------TTIHG-LTGY--TPHFACLVV-SADRGITWTT 292 (591)
T ss_pred HH----------------HHhhhcceEEEeecccchhhhe--------eeeee-cccC--CCceEEEEE-EcCCCCcccc
Confidence 11 1111124579999999543110 00000 1122 367776655 44443 456
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~ 224 (620)
.+.+-++..++ .|.++++||+|+.++.+
T Consensus 293 rEHLgl~~AL~---iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 293 REHLGLIAALN---IPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HHHHHHHHHhC---CCeEEEEEeeccccchh
Confidence 67777777665 79999999999998754
No 360
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.002 Score=67.72 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++|||.||. .+.+.+|+.. +...|+.+|+| +++.++ .+-+.+..++.+. -.+.|+|+||+
T Consensus 50 ~~~~fIDvpgh------------~~~i~~miag-~~~~d~alLvV-~~deGl~~qtgEhL~iLdllg--i~~giivltk~ 113 (447)
T COG3276 50 GVMGFIDVPGH------------PDFISNLLAG-LGGIDYALLVV-AADEGLMAQTGEHLLILDLLG--IKNGIIVLTKA 113 (447)
T ss_pred CceEEeeCCCc------------HHHHHHHHhh-hcCCceEEEEE-eCccCcchhhHHHHHHHHhcC--CCceEEEEecc
Confidence 37899999995 3556666533 34567776654 555444 3444554555444 25669999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|..++.
T Consensus 114 D~~d~~ 119 (447)
T COG3276 114 DRVDEA 119 (447)
T ss_pred ccccHH
Confidence 999764
No 361
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.11 E-value=0.00057 Score=66.52 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~ 69 (620)
-++.+||-||+||||++.-|+|.. -|+.+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasy 89 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAY 89 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-Cccccc
Confidence 378899999999999999999984 455544
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.10 E-value=0.0018 Score=67.97 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=93.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCC-------CCcceeeeecCCCCccCChHHHHHH
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED-------GSQEYAEFLHLPKRRFTDFSMVRKE 110 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (620)
-..|++||++|+||||.|--|..+-++--+.- .+-+..++. .-..|+.....|-....++.++..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-------kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-------KVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-------ceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH
Confidence 34689999999999999998876632000000 011111111 0134555555665666666666666
Q ss_pred HHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC-CeEEEEeccCCc
Q 007054 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP-NSVILAISPANQ 189 (620)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~-~~iil~V~~a~~ 189 (620)
+... ...++.||||-|-.... ...+.+ ...|+... +.-..+|.+++.
T Consensus 276 i~~l-----------------------~~~d~ILVDTaGrs~~D--------~~~i~e-l~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 276 IEAL-----------------------RDCDVILVDTAGRSQYD--------KEKIEE-LKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred HHHh-----------------------hcCCEEEEeCCCCCccC--------HHHHHH-HHHHHhccccceEEEEEecCc
Confidence 5432 12489999999976532 223333 23454443 434455666654
Q ss_pred hhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhh
Q 007054 190 DIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADI 252 (620)
Q Consensus 190 d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~ 252 (620)
- ..+.......+...+ -.=+++||.|....-.+..+++.. ..+.+.|+..-.+-.+|+
T Consensus 324 K--~~dlkei~~~f~~~~-i~~~I~TKlDET~s~G~~~s~~~e--~~~PV~YvT~GQ~VPeDI 381 (407)
T COG1419 324 K--YEDLKEIIKQFSLFP-IDGLIFTKLDETTSLGNLFSLMYE--TRLPVSYVTNGQRVPEDI 381 (407)
T ss_pred c--hHHHHHHHHHhccCC-cceeEEEcccccCchhHHHHHHHH--hCCCeEEEeCCCCCCchh
Confidence 2 334444556555532 334689999988765566665442 233455554444434444
No 363
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.002 Score=68.08 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
......+|.+--.|||||-..|+... +..+ -.++++++-+.++
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~-------------------------------~Rem~~Q~LDsMd 50 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLS-------------------------------EREMRAQVLDSMD 50 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcC-------------------------------hHHHHHHhhhhhh
Confidence 44567788888999999999998653 1111 1233333333333
Q ss_pred hhcCCCCCccCccEEEEEecCC--CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~--~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
-....+-.+-...+++.....+ ...|.||||||-.+.+-. +.+.+.-+...+|+| +|.+++..|
T Consensus 51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalLvV-DAsQGveAQ 116 (603)
T COG0481 51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALLVV-DASQGVEAQ 116 (603)
T ss_pred hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEEEE-ECccchHHH
Confidence 2222333444566666655443 356899999997764322 112233444454644 566777666
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.....-..++ .+--+|-|+||+|+-...
T Consensus 117 TlAN~YlAle-~~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 117 TLANVYLALE-NNLEIIPVLNKIDLPAAD 144 (603)
T ss_pred HHHHHHHHHH-cCcEEEEeeecccCCCCC
Confidence 5433333333 357899999999996443
No 364
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.03 E-value=0.013 Score=56.81 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCCeEEEEeccCCchhcchHH-HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEe
Q 007054 167 ESMVRSYVEKPNSVILAISPANQDIATSDA-MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIV 245 (620)
Q Consensus 167 ~~~~~~yi~~~~~iil~V~~a~~d~~~~~~-l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~ 245 (620)
+.+-+.-++..|.+|.+|.|+...+.+.+- -+++.++. -+|+.+|+||+|.. +.. +......+++.+.+++
T Consensus 146 EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~e~--e~~----~~~~~~~~~~~vlg~i 217 (255)
T COG3640 146 EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVDEE--EEL----LRELAEELGLEVLGVI 217 (255)
T ss_pred hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeeccch--hHH----HHhhhhccCCeEEEEc
Confidence 444455667899998888887666555442 34455544 38999999999966 211 2223345566777888
Q ss_pred eCChh
Q 007054 246 NRSQA 250 (620)
Q Consensus 246 ~~s~~ 250 (620)
+.+.+
T Consensus 218 P~d~~ 222 (255)
T COG3640 218 PYDPE 222 (255)
T ss_pred cCCHH
Confidence 87654
No 365
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.01 E-value=0.00063 Score=70.32 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCccc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~ 67 (620)
-++.|||-||+|||||||+|......|+|
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k~C~vg 281 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRKACNVG 281 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhccccCC
Confidence 38999999999999999999988764444
No 366
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.01 E-value=0.0017 Score=61.51 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.+.|+|+.||||||+.+++..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eEEEEccCCCCcchHHHHHHH
Confidence 467999999999999999974
No 367
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.95 E-value=1.2 Score=51.76 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=19.7
Q ss_pred EcCCCCCHHHHHHhhhCCCcCcc
Q 007054 44 VGGQSSGKSSVLESVVGRDFLPR 66 (620)
Q Consensus 44 vG~~ssGKSSllnaL~g~~~lP~ 66 (620)
.|.||+|||||||.|.|..| ++
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~ 22 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DV 22 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cc
Confidence 49999999999999999986 44
No 368
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0037 Score=65.48 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=47.7
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
...-+.|+||||--+-+ +=+.+-+.-.|+.++++++| .++.. ..+++..-..-.+.|++-.+||+
T Consensus 79 ~~~~iNLLDTPGHeDFS-------------EDTYRtLtAvDsAvMVIDaA-KGiE~-qT~KLfeVcrlR~iPI~TFiNKl 143 (528)
T COG4108 79 ADCLVNLLDTPGHEDFS-------------EDTYRTLTAVDSAVMVIDAA-KGIEP-QTLKLFEVCRLRDIPIFTFINKL 143 (528)
T ss_pred CCeEEeccCCCCccccc-------------hhHHHHHHhhheeeEEEecc-cCccH-HHHHHHHHHhhcCCceEEEeecc
Confidence 34678899999965432 11233344678876655544 56644 45677777777889999999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|.-.+
T Consensus 144 DR~~r 148 (528)
T COG4108 144 DREGR 148 (528)
T ss_pred ccccC
Confidence 97644
No 369
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.88 E-value=0.00077 Score=64.17 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=70.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
.+||||+-.+||+++|-+.+-.. ||.+. .||+.- +
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~-fp~~y-----vPTVFd--n------------------------------------- 40 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNA-FPEEY-----VPTVFD--N------------------------------------- 40 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCc-Ccccc-----cCeEEc--c-------------------------------------
Confidence 79999999999999999888664 45443 443331 1
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEec---cCCchhcchHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS---PANQDIATSDA 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~---~a~~d~~~~~~ 196 (620)
-...+.+.......|.|+||.|-.+- +.++-+ -..+.|.+++|.. +.+.+.....+
T Consensus 41 --------ys~~v~V~dg~~v~L~LwDTAGqedY----------DrlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~kW 99 (198)
T KOG0393|consen 41 --------YSANVTVDDGKPVELGLWDTAGQEDY----------DRLRPL---SYPQTDVFLLCFSVVSPESFENVKSKW 99 (198)
T ss_pred --------ceEEEEecCCCEEEEeeeecCCCccc----------cccccc---CCCCCCEEEEEEEcCChhhHHHHHhhh
Confidence 11112232122346899999994331 113322 3456788876532 22222224445
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+--.+...| +.|+|+|.||.|+.+.
T Consensus 100 ~pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 100 IPEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred hHHHHhhCC-CCCEEEEeehHHhhhC
Confidence 555555565 5899999999999843
No 370
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.82 E-value=0.0064 Score=53.80 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
--+|...|--|+||+|+|..|.|.+. +. .|
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~--~h---lt--------------------------------------------- 46 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDP--RH---LT--------------------------------------------- 46 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCCh--hh---cc---------------------------------------------
Confidence 34899999999999999999999874 11 11
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH-
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA- 196 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~- 196 (620)
.+++|+.. .+......+|+++|.-|-. .++-....|..+.|.+|++++++.......-.
T Consensus 47 ---pT~GFn~k----~v~~~g~f~LnvwDiGGqr-------------~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 47 ---PTNGFNTK----KVEYDGTFHLNVWDIGGQR-------------GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISE 106 (185)
T ss_pred ---ccCCcceE----EEeecCcEEEEEEecCCcc-------------ccchhhhhhhhccceEEEEEeCCchHhHHHHHH
Confidence 12334432 2344455789999998843 34566778999999998877754432212222
Q ss_pred --HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 --MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 --l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+..-...++.+--||-|++..
T Consensus 107 el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 107 ELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 23344444445667777788887643
No 371
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0076 Score=60.76 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=29.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEec
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~ 83 (620)
.|..||.--.|||||..||+|.-. -+ ..--.++-+.|+|...
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT-~~-hseElkRgitIkLGYA 53 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT-DR-HSEELKRGITIKLGYA 53 (415)
T ss_pred Eeeeeeecccchhhheehhhceee-ec-hhHHHhcCcEEEeccc
Confidence 689999999999999999999732 11 1223344555665543
No 372
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0098 Score=60.80 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCc-CcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~-lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
.+.+.+-||.---|||||+-.|+--.- ++.+. +.+ . ....-.+.......|+.-+-+-++.+.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQ-la~----------l-----~~dS~~~~t~g~~~D~ALLvDGL~AER 68 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQ-LAS----------L-----ERDSKRKGTQGEKIDLALLVDGLEAER 68 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHH-HHH----------H-----hcccccccCCCCccchhhhhhhhHHHH
Confidence 567999999999999999999885422 01000 000 0 000000111224456766666665543
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
+ .|++-++-. ..++-.-..+.+.||||- .+..++|+-. ...+|..|++|+ |..++..|.
T Consensus 69 E------QGITIDVAY-RyFsT~KRkFIiADTPGH------------eQYTRNMaTG-ASTadlAIlLVD-AR~Gvl~QT 127 (431)
T COG2895 69 E------QGITIDVAY-RYFSTEKRKFIIADTPGH------------EQYTRNMATG-ASTADLAILLVD-ARKGVLEQT 127 (431)
T ss_pred h------cCceEEEEe-eecccccceEEEecCCcH------------HHHhhhhhcc-cccccEEEEEEe-cchhhHHHh
Confidence 3 233333322 334555678999999993 3455666644 245777777654 555554443
Q ss_pred H--HHHHHHhCCCCCc-eEEEeccCCCCCCCC
Q 007054 196 A--MKLAREVDPTGER-TFGVLTKLDLMDKGT 224 (620)
Q Consensus 196 ~--l~l~~~~~~~~~r-ti~VltK~D~~~~~~ 224 (620)
- -.++..+ |.| .++.+||+|+++=..
T Consensus 128 rRHs~I~sLL---GIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 128 RRHSFIASLL---GIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred HHHHHHHHHh---CCcEEEEEEeeecccccCH
Confidence 2 1233333 444 567799999997544
No 373
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=96.70 E-value=0.0049 Score=55.51 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=42.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH---HHHHHHHhCCCCCceEEEec
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---AMKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~---~l~l~~~~~~~~~rti~Vlt 215 (620)
..+|.|+||.|--+ ...+---|.+..|..+|+.+-...|- -+. |..-++.......-.++|-|
T Consensus 61 ra~L~IWDTAGQEr-------------fHALGPIYYRgSnGalLVyDITDrdS-FqKVKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 61 RADLHIWDTAGQER-------------FHALGPIYYRGSNGALLVYDITDRDS-FQKVKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred eeeeeeeeccchHh-------------hhccCceEEeCCCceEEEEeccchHH-HHHHHHHHHHHHHHhCCeeEEEEecC
Confidence 46899999999432 22233348888998888654333221 222 22333444444456789999
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|+|+-++
T Consensus 127 KiDLEee 133 (218)
T KOG0088|consen 127 KIDLEEE 133 (218)
T ss_pred cccHHHh
Confidence 9998754
No 374
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.011 Score=53.97 Aligned_cols=115 Identities=14% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+--.+++.|--||||+||++.|-..+. +.-.+|--|| .
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPT-----------S---------------------------- 56 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPT-----------S---------------------------- 56 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCC-----------h----------------------------
Confidence 566999999999999999999976543 1123333330 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
..+. | ....++-+|+-|- .+.+...+.|+...|+|+..|+.+...- -+++
T Consensus 57 -----------E~l~--I---g~m~ftt~DLGGH-------------~qArr~wkdyf~~v~~iv~lvda~d~er-~~es 106 (193)
T KOG0077|consen 57 -----------EELS--I---GGMTFTTFDLGGH-------------LQARRVWKDYFPQVDAIVYLVDAYDQER-FAES 106 (193)
T ss_pred -----------HHhe--e---cCceEEEEccccH-------------HHHHHHHHHHHhhhceeEeeeehhhHHH-hHHH
Confidence 0000 1 1467889999993 4557788899999999988877665432 1111
Q ss_pred ---HHHH-HHhCCCCCceEEEeccCCCCCCC
Q 007054 197 ---MKLA-REVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 ---l~l~-~~~~~~~~rti~VltK~D~~~~~ 223 (620)
++.. ....-...+.++..||+|.-..-
T Consensus 107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 107 KKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 1111 11111357899999999987544
No 375
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.031 Score=49.57 Aligned_cols=121 Identities=22% Similarity=0.310 Sum_probs=75.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
-+|+.+|-.+|||+|+|--|.-.. ++|..|
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ip------------------------------------------- 47 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQ-------SVTTIP------------------------------------------- 47 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCC-------Cccccc-------------------------------------------
Confidence 389999999999999998875332 233333
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
+.+|+-..+.. ....+.++|+-|- +.++.+.+.|......+|+++++|..|- -+++..
T Consensus 48 ---TvGFnvetVty-----kN~kfNvwdvGGq-------------d~iRplWrhYy~gtqglIFV~Dsa~~dr-~eeAr~ 105 (180)
T KOG0071|consen 48 ---TVGFNVETVTY-----KNVKFNVWDVGGQ-------------DKIRPLWRHYYTGTQGLIFVVDSADRDR-IEEARN 105 (180)
T ss_pred ---ccceeEEEEEe-----eeeEEeeeeccCc-------------hhhhHHHHhhccCCceEEEEEeccchhh-HHHHHH
Confidence 12343333222 2356788998883 4568889999999999999988876532 222222
Q ss_pred -HHHHhCCC---CCceEEEeccCCCCCCCC--cHHHHHh
Q 007054 199 -LAREVDPT---GERTFGVLTKLDLMDKGT--NALDVLE 231 (620)
Q Consensus 199 -l~~~~~~~---~~rti~VltK~D~~~~~~--~~~~~l~ 231 (620)
+-+-+... ....++.-||-|+-+.-. +..+.++
T Consensus 106 ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 106 ELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred HHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 22222211 234566679999876443 2344443
No 376
>PRK01889 GTPase RsgA; Reviewed
Probab=96.52 E-value=0.0041 Score=65.82 Aligned_cols=24 Identities=29% Similarity=0.695 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.++++|.+|+|||||+|+|+|...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 799999999999999999999753
No 377
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.22 Score=50.95 Aligned_cols=78 Identities=17% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh-cCCCeEEEEeccCCchhcchHHHHHHHHhCCCC-----------
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTG----------- 207 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi-~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~----------- 207 (620)
..+.+.|+|-+-... -+.+..+...--+..++ .-++++ ++|.+.-.|...-+.++.|..+.|.-
T Consensus 264 e~~i~~d~p~~~~~~---~d~~~~~~~sL~~~AfLl~VcHiv-ivV~d~~~d~~lir~L~~Ae~~rP~laifrh~~~~~r 339 (491)
T KOG4181|consen 264 ERHILLDTPPLMPVG---KDSDHQDLYSLGTMAFLLSVCHIV-IVVIDGLADEQLIRLLNAAERLRPTLAIFRHCKGYVR 339 (491)
T ss_pred hhhhccCCCCCCCCC---CCchHHHHHHHHHHHHHHHHhhEE-EEEecchhHHHHHHHHHHHHhhCcccCcccccccccc
Confidence 356778888765432 23333333222233444 346655 55666666665556778888888752
Q ss_pred ---CceEEEeccCCCCC
Q 007054 208 ---ERTFGVLTKLDLMD 221 (620)
Q Consensus 208 ---~rti~VltK~D~~~ 221 (620)
...++|-||.-..+
T Consensus 340 ~~~p~lVFv~~KA~riD 356 (491)
T KOG4181|consen 340 DHMPQLVFVRAKAHRID 356 (491)
T ss_pred ccCcceEEEeccccccc
Confidence 34788888876654
No 378
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.48 E-value=0.035 Score=58.75 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHH-HhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~-~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++.||||.|=... + .+.+.++.. +-+-+||-++|++++.. -|++...|+.++..-.=|=+|+||.
T Consensus 182 ~~DvvIvDTAGRl~i-----d---e~Lm~El~~Ik~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI-----D---EELMDELKEIKEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc-----c---HHHHHHHHHHHhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEcc
Confidence 468999999996542 1 233333322 22446888877665543 6889999999988777788999999
Q ss_pred CCCCCCCcHHH
Q 007054 218 DLMDKGTNALD 228 (620)
Q Consensus 218 D~~~~~~~~~~ 228 (620)
|--.+|.-++.
T Consensus 250 DGdaRGGaALS 260 (451)
T COG0541 250 DGDARGGAALS 260 (451)
T ss_pred cCCCcchHHHh
Confidence 99888775544
No 379
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.013 Score=59.51 Aligned_cols=65 Identities=22% Similarity=0.431 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC---CeEEEEeccCCchhcchHH--HHHHHHhCCCCCceEEEe
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDIATSDA--MKLAREVDPTGERTFGVL 214 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~---~~iil~V~~a~~d~~~~~~--l~l~~~~~~~~~rti~Vl 214 (620)
..+++||.||- ..+++..|..+ |..+| |.+...+..+|.+ +-+...+ ....++|+
T Consensus 70 lq~tlvDCPGH----------------asLIRtiiggaqiiDlm~l-viDv~kG~QtQtAEcLiig~~~---c~klvvvi 129 (522)
T KOG0461|consen 70 LQFTLVDCPGH----------------ASLIRTIIGGAQIIDLMIL-VIDVQKGKQTQTAECLIIGELL---CKKLVVVI 129 (522)
T ss_pred ceeEEEeCCCc----------------HHHHHHHHhhhheeeeeeE-EEehhcccccccchhhhhhhhh---ccceEEEE
Confidence 46799999994 23344444443 55545 5556666666655 3233333 46789999
Q ss_pred ccCCCCCCCC
Q 007054 215 TKLDLMDKGT 224 (620)
Q Consensus 215 tK~D~~~~~~ 224 (620)
||+|...++.
T Consensus 130 nkid~lpE~q 139 (522)
T KOG0461|consen 130 NKIDVLPENQ 139 (522)
T ss_pred eccccccchh
Confidence 9999997654
No 380
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.013 Score=64.16 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~ 69 (620)
.+++||..|||||||++.|+|. +|...|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 7999999999999999999996 443443
No 381
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.0044 Score=63.94 Aligned_cols=79 Identities=29% Similarity=0.397 Sum_probs=48.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||-|=.. |..+.-+.+.+ +.+++ +||.||+++ +|+. -|.+...++.+...-.-+-++|||.|
T Consensus 183 ~fdvIIvDTSGRh~-----qe~sLfeEM~~-v~~ai-~Pd~vi~Vm-Dasi---GQaae~Qa~aFk~~vdvg~vIlTKlD 251 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHK-----QEASLFEEMKQ-VSKAI-KPDEIIFVM-DASI---GQAAEAQARAFKETVDVGAVILTKLD 251 (483)
T ss_pred CCcEEEEeCCCchh-----hhHHHHHHHHH-HHhhc-CCCeEEEEE-eccc---cHhHHHHHHHHHHhhccceEEEEecc
Confidence 46899999999654 22223333222 22333 488786654 5544 34455566666655556778999999
Q ss_pred CCCCCCcHHH
Q 007054 219 LMDKGTNALD 228 (620)
Q Consensus 219 ~~~~~~~~~~ 228 (620)
--..|.-++.
T Consensus 252 GhakGGgAlS 261 (483)
T KOG0780|consen 252 GHAKGGGALS 261 (483)
T ss_pred cCCCCCceee
Confidence 8877764433
No 382
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.0082 Score=66.79 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
....|++|..--.||+||..+|+-.+- -+..|.+-.+++- |+.+ ++.+.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfl---------------------d~re-----deq~r 56 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFL---------------------DTRE-----DEQTR 56 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeec---------------------cccc-----hhhhh
Confidence 566899999999999999999986542 2344444333321 1110 11122
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.++-+..++| + -....-+.|||+||-.+.. ..+.+...-+|..+ +.+++..++ .+..
T Consensus 57 gitmkss~is-----~---~~~~~~~nlidspghvdf~-------------sevssas~l~d~al-vlvdvvegv-~~qt 113 (887)
T KOG0467|consen 57 GITMKSSAIS-----L---LHKDYLINLIDSPGHVDFS-------------SEVSSASRLSDGAL-VLVDVVEGV-CSQT 113 (887)
T ss_pred ceeeeccccc-----c---ccCceEEEEecCCCccchh-------------hhhhhhhhhcCCcE-EEEeecccc-chhH
Confidence 2222222333 0 0123457899999977643 22334444556553 345566677 4444
Q ss_pred HHHHHHhCCCCCceEEEeccCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~ 219 (620)
..+.|++--.|.+.|.|+||+|.
T Consensus 114 ~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 114 YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHHHHHHccCceEEEEehhhh
Confidence 56888777778999999999994
No 383
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=96.21 E-value=0.0017 Score=56.53 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=64.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhc-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..|.++||.| .+..++.+-.|.+.+|+++|+.+-+|. .+. .+.|+.-+.+..........+-||+
T Consensus 47 vklqiwdtag-------------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAG-------------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccc-------------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 4688999999 366788899999999999887766553 222 2445666666666667788999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhh
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADI 252 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~ 252 (620)
|+..+..-..+--+......+++|...++..+-++
T Consensus 114 d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 114 DLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNV 148 (192)
T ss_pred ccchhhccccchHHHHHHHHCCCceeccccccccH
Confidence 99753321111001112334567776666555443
No 384
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.17 E-value=0.017 Score=64.87 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCC-CCceEEEecc
Q 007054 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPT-GERTFGVLTK 216 (620)
Q Consensus 163 ~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~-~~rti~VltK 216 (620)
+++--.+++..+++++.+|| +.++..+.......+.+.+... ..+|++++|+
T Consensus 475 QrQRiaiARall~~~~iliL--DE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 475 ERQRLALARALLADAPILLL--DEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEE--eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 45556789999999996654 5555444333333344444332 4689999886
No 385
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.13 E-value=0.069 Score=54.84 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=38.5
Q ss_pred HHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEe
Q 007054 13 RIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (620)
Q Consensus 13 ~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~ 82 (620)
.++.+++..+....+ .....|+++|||+.++|||||..-|+..-+ --.+.|+-+.|--
T Consensus 84 NlH~ale~~R~~~e~------~~~~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LDv 141 (415)
T KOG2749|consen 84 NLHAALEKRRMQAEE------ESSYGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELDV 141 (415)
T ss_pred hHHHHHHHHhhhhhh------hhccCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcCC
Confidence 456666666654331 113689999999999999999999886532 1245565555543
No 386
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.11 E-value=0.0059 Score=62.98 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.|.+||.||+||||++|.|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 678999999999999999987765
No 387
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.064 Score=53.38 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
-++|+|+.|||||||+.+|+|. ++...|.+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 6899999999999999999995 344445444
No 388
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.022 Score=57.88 Aligned_cols=134 Identities=19% Similarity=0.325 Sum_probs=86.5
Q ss_pred CCCC--eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHH
Q 007054 36 EALP--SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (620)
Q Consensus 36 ~~lP--~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (620)
.+.| .|.-+|.--.||+||--||+..-. . ....++..++++-+..++
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila--~-----------------------------~g~A~~~kydeID~APEE 98 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILA--E-----------------------------KGGAKFKKYDEIDKAPEE 98 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHH--h-----------------------------ccccccccHhhhhcChhh
Confidence 3556 467799999999999999986521 0 112344455555555444
Q ss_pred HHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc
Q 007054 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA 192 (620)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~ 192 (620)
.. .+++-+.-.++..... .++.=+|.||- .+.+++|+-...+- |..||+|.+.... ..
T Consensus 99 ka-------RGITIn~aHveYeTa~-RhYaH~DCPGH------------ADYIKNMItGaaqM-DGaILVVaatDG~MPQ 157 (449)
T KOG0460|consen 99 KA-------RGITINAAHVEYETAK-RHYAHTDCPGH------------ADYIKNMITGAAQM-DGAILVVAATDGPMPQ 157 (449)
T ss_pred hh-------ccceEeeeeeeeeccc-cccccCCCCch------------HHHHHHhhcCcccc-CceEEEEEcCCCCCcc
Confidence 32 3344455556655543 67888999993 46777777665544 4444655443322 34
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+.+.+-+|+++.- ..+++-+||.|.++..
T Consensus 158 TrEHlLLArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 158 TREHLLLARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred hHHHHHHHHHcCC--ceEEEEEecccccCCH
Confidence 5667889999875 6788889999999654
No 389
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.95 E-value=0.0083 Score=61.39 Aligned_cols=77 Identities=29% Similarity=0.371 Sum_probs=44.1
Q ss_pred EEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-CCCeEEEEeccCCchh--cchHHHHHHHHhCCCC
Q 007054 131 HLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDI--ATSDAMKLAREVDPTG 207 (620)
Q Consensus 131 ~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~-~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~ 207 (620)
++.|+.....-+||||+.|--+ ..+..+...-. -+|.-.|++ -+|.++ .+.+.+-+|-.+ .
T Consensus 210 WvkIce~saKviTFIDLAGHEk------------YLKTTvFGMTGH~PDf~MLMi-GaNaGIiGmTKEHLgLALaL---~ 273 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEK------------YLKTTVFGMTGHMPDFTMLMI-GANAGIIGMTKEHLGLALAL---H 273 (641)
T ss_pred ceeeccccceeEEEEeccchhh------------hhheeeeccccCCCCceEEEe-cccccceeccHHhhhhhhhh---c
Confidence 3455555566789999999422 11111111111 256554544 344433 145555555544 4
Q ss_pred CceEEEeccCCCCCCC
Q 007054 208 ERTFGVLTKLDLMDKG 223 (620)
Q Consensus 208 ~rti~VltK~D~~~~~ 223 (620)
.|+++|+||+|+....
T Consensus 274 VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 274 VPVFVVVTKIDMCPAN 289 (641)
T ss_pred CcEEEEEEeeccCcHH
Confidence 7999999999998643
No 390
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.95 E-value=0.006 Score=59.62 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecc-CCchhcchH-HHHHHHHhCCCCCceEEEeccCC
Q 007054 163 VEDIESMVRSYVEKPNSVILAISP-ANQDIATSD-AMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 163 ~~~~~~~~~~yi~~~~~iil~V~~-a~~d~~~~~-~l~l~~~~~~~~~rti~VltK~D 218 (620)
+++--.+++..+.+|..| |+=-| ++-|..+.. .+.+.+++......|++++|+=.
T Consensus 147 qqQRVAIARAL~~~P~ii-lADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 147 QQQRVAIARALINNPKII-LADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHHhcCCCeE-EeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 455567777788888854 65444 334554444 45677887766678999999733
No 391
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.94 E-value=0.0062 Score=56.79 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~ 67 (620)
+++|+|..|||||||||-|.|... |.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~ 53 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PAS 53 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCC
Confidence 799999999999999999999863 654
No 392
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.84 E-value=0.014 Score=56.35 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 007054 41 VAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g 60 (620)
-+|||+|||||||..+..+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47999999999999887764
No 393
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.84 E-value=0.0085 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
+..+|.|+.+|||||++.||.=
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 394
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.60 E-value=0.039 Score=57.42 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 395
>PRK13695 putative NTPase; Provisional
Probab=95.58 E-value=0.23 Score=46.74 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 396
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.093 Score=46.86 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=49.4
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh---cchHHHHHHHHhCCCCCceEEEe
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVL 214 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~---~~~~~l~l~~~~~~~~~rti~Vl 214 (620)
+...+.++|+-|-.+ ++-..+.|..+.+++|.+|++++.|- +..+-..+..+-.-.+-..+++.
T Consensus 60 KNLk~~vwdLggqtS-------------irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTS-------------IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCccc-------------ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 346789999998654 35567889999999999998887652 22222233333333456778889
Q ss_pred ccCCCCCC
Q 007054 215 TKLDLMDK 222 (620)
Q Consensus 215 tK~D~~~~ 222 (620)
||.|..-.
T Consensus 127 nKqD~~~~ 134 (182)
T KOG0072|consen 127 NKQDYSGA 134 (182)
T ss_pred ccccchhh
Confidence 99998643
No 397
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.48 E-value=0.018 Score=59.47 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=41.6
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh-cCCCeEEEEeccCCchhc--chHHHHHHHHhCCCCCceEEEeccC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi-~~~~~iil~V~~a~~d~~--~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
-+.||||-|-- ...+..++..+ ++.|..+| |++|+.+.. +.+.+-++-. .+-|+|+|+||+
T Consensus 202 lVsfVDtvGHE------------pwLrTtirGL~gqk~dYglL-vVaAddG~~~~tkEHLgi~~a---~~lPviVvvTK~ 265 (527)
T COG5258 202 LVSFVDTVGHE------------PWLRTTIRGLLGQKVDYGLL-VVAADDGVTKMTKEHLGIALA---MELPVIVVVTKI 265 (527)
T ss_pred EEEEEecCCcc------------HHHHHHHHHHhccccceEEE-EEEccCCcchhhhHhhhhhhh---hcCCEEEEEEec
Confidence 45799999932 33344444444 45788866 455665432 3344433332 358999999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|+.+..
T Consensus 266 D~~~dd 271 (527)
T COG5258 266 DMVPDD 271 (527)
T ss_pred ccCcHH
Confidence 999764
No 398
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.01 Score=58.27 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.|+++|+.|||||||||.|.|..-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999999863
No 399
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.41 E-value=0.012 Score=52.92 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|..|||||||+++|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 78999999999999999999984
No 400
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.40 E-value=0.014 Score=52.92 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 007054 41 VAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~ 61 (620)
|+|+|+++||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999985
No 401
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.0081 Score=62.12 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
++..|.|+..-.+||+|+-+.|+=..- .++.. ++. ..+...+||-++..+
T Consensus 36 kirnigiiahidagktttterily~ag-------~~~s~-----g~v------------ddgdtvtdfla~ere------ 85 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAG-------AIHSA-----GDV------------DDGDTVTDFLAIERE------ 85 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhh-------hhhcc-----ccc------------CCCchHHHHHHHHHh------
Confidence 556899999999999999998873211 01000 011 112233444333221
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.| ++-..--+ -..|.+..+.+|||||-.+.... +.+.++--|.+ ++|.+++.+...| .
T Consensus 86 --rg----itiqsaav-~fdwkg~rinlidtpghvdf~le-------------verclrvldga-vav~dasagve~q-t 143 (753)
T KOG0464|consen 86 --RG----ITIQSAAV-NFDWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGA-VAVFDASAGVEAQ-T 143 (753)
T ss_pred --cC----ceeeeeee-ecccccceEeeecCCCcceEEEE-------------HHHHHHHhcCe-EEEEeccCCcccc-e
Confidence 12 22111112 24677889999999998764332 22223333545 4456666666443 4
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+..-++.+....|.++-+||+|....
T Consensus 144 ltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 144 LTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eeeehhccccCCchhhhhhhhhhhhh
Confidence 56778888888999999999998754
No 402
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.39 E-value=0.012 Score=56.35 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.|+|..|||||||+|+|+|.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~ 55 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGD 55 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCc
Confidence 6999999999999999999997
No 403
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.28 E-value=0.081 Score=61.70 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 163 ~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
+.+--.+++..+++++.+|| +.++..+.......+.+.+.. ..+|++++|+-
T Consensus 620 QrQRiaLARall~~p~iliL--DEptS~LD~~te~~i~~~l~~-~~~T~IiitHr 671 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILIL--DEATSALDPETEKIIDDNLRR-RGCTCIIVAHR 671 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEE--ECccccCCHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 45666789999999997755 544444433333334444444 36888888873
No 404
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.26 E-value=0.12 Score=58.94 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~ 66 (620)
.++|||+.|||||||++.|+|.- |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 67999999999999999999973 64
No 405
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.015 Score=53.64 Aligned_cols=31 Identities=39% Similarity=0.710 Sum_probs=25.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.+.|||..+|||||||++|+|+ ++.++|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 6789999999999999999997 454555544
No 406
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.20 E-value=0.028 Score=53.73 Aligned_cols=30 Identities=27% Similarity=0.646 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 71 (620)
.++|+|.+||||||++++|+|. +|.+.+.+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~--i~~~~~~i 56 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF--IPPDERII 56 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh--cCCCCCEE
Confidence 7999999999999999999996 35444433
No 407
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.20 E-value=0.067 Score=60.92 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.|+|+|..|||||||++.|+|.-
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 67999999999999999999973
No 408
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.17 E-value=0.073 Score=61.80 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|||+.|||||||++.|+|.
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 409
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.16 E-value=0.1 Score=49.98 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcH--H-HHHh-CCccccCC
Q 007054 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNA--L-DVLE-GRSYRLQH 239 (620)
Q Consensus 164 ~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~--~-~~l~-~~~~~l~l 239 (620)
..++.++..|++++|.|+++++....+..... .+.. ...+.++++|+||+|+.+..... . .... ........
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~--~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGSLIP--RLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCccch--hHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 34688999999999998877664432211111 1211 12468999999999998644321 1 1110 00011112
Q ss_pred ---CeeEEeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCcc--ccccChHHHHHHHHH
Q 007054 240 ---PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL--AGKMGSEYLAKLLSK 293 (620)
Q Consensus 240 ---g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~--~~~~g~~~L~~~L~~ 293 (620)
.++.++..++.++++.+........ ... ..-+ ....|-+.|.+.|..
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l~------~~~-~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKKLAK------KGG-DVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhh------cCC-cEEEEcCCCCCHHHHHHHHHH
Confidence 3566777666666554443332211 111 1111 145777777666653
No 410
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.13 E-value=0.085 Score=61.45 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|++||+.|||||||++.|.|.
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999996
No 411
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.13 E-value=0.15 Score=57.86 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
++++||+.||||||+++.|.|.
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999986
No 412
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.12 E-value=0.08 Score=59.43 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|+|.
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999996
No 413
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.11 E-value=0.016 Score=52.68 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 414
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.08 E-value=0.012 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999865
No 415
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.07 E-value=0.18 Score=51.81 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=53.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHH---HHHHHhhcC-CCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIE---SMVRSYVEK-PNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~---~~~~~yi~~-~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~Vl 214 (620)
..++.||||.|=..+..+ +.+.++ +.+...+.. |+-++| |.+|.. -+.++.-|+.+...-.=+-+|+
T Consensus 221 ~~DvvliDTAGRLhnk~n-----LM~EL~KI~rV~~k~~~~ap~e~ll-vlDAtt---Gqnal~QAk~F~eav~l~GiIl 291 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKN-----LMDELKKIVRVIKKDDPDAPHEILL-VLDATT---GQNALSQAKIFNEAVGLDGIIL 291 (340)
T ss_pred CCCEEEEeCcccccCchh-----HHHHHHHHHHHhccccCCCCceEEE-EEEccc---ChhHHHHHHHHHHhcCCceEEE
Confidence 368999999996654432 444433 334444433 444644 555554 4677777777776666778999
Q ss_pred ccCCCCCCCCcHHHH
Q 007054 215 TKLDLMDKGTNALDV 229 (620)
Q Consensus 215 tK~D~~~~~~~~~~~ 229 (620)
||+|-...|.....+
T Consensus 292 TKlDgtAKGG~il~I 306 (340)
T COG0552 292 TKLDGTAKGGIILSI 306 (340)
T ss_pred EecccCCCcceeeeH
Confidence 999987777755444
No 416
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.94 E-value=0.02 Score=54.61 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhh---CCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVV---GRD 62 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~---g~~ 62 (620)
+.|.|+|+|.+||||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999998 654
No 417
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.91 E-value=0.11 Score=59.09 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|+|.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999997
No 418
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.91 E-value=0.024 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999999973
No 419
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.87 E-value=0.025 Score=53.53 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|.+||||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999985
No 420
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.83 E-value=0.025 Score=55.12 Aligned_cols=29 Identities=38% Similarity=0.395 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++++|+.|||||||++.|+|.. |..+|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 57 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSGE 57 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 68999999999999999999973 434443
No 421
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.024 Score=56.30 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999997
No 422
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.81 E-value=0.037 Score=58.08 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
-.|+|+|.+||||||++++|++. +|.+..++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 47999999999999999999986 465555544
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.78 E-value=0.22 Score=41.07 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 007054 41 VAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~ 61 (620)
|++.|..|+||||+...|...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999999754
No 424
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.78 E-value=0.033 Score=57.06 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|..|+||||++..|.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999999875
No 425
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=94.75 E-value=0.046 Score=50.51 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEe
Q 007054 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIV 245 (620)
Q Consensus 166 ~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~ 245 (620)
++++.+.+++++|.++++++ ++...... ...+...+...+.+.++|+||+|+.+... ..+ +..........++.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D-~~~~~~~~-~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~iS 77 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLD-ARDPELTR-SRKLERYVLELGKKLLIVLNKADLVPKEV-LEK-WKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHHhhCCEEEEEee-CCCCcccC-CHHHHHHHHhCCCcEEEEEEhHHhCCHHH-HHH-HHHHHHhCCCcEEEEE
Confidence 36677888889998877665 44322222 22344444445789999999999974321 111 1000011223456666
Q ss_pred eCChhhhhccCC
Q 007054 246 NRSQADINRNID 257 (620)
Q Consensus 246 ~~s~~~~~~~~~ 257 (620)
+.++.++++...
T Consensus 78 a~~~~gi~~L~~ 89 (156)
T cd01859 78 AKERLGTKILRR 89 (156)
T ss_pred ccccccHHHHHH
Confidence 666655554433
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.74 E-value=0.026 Score=55.32 Aligned_cols=29 Identities=41% Similarity=0.436 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++|+|+.|||||||+++|+|. +|...|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~ 60 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSGE 60 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCcee
Confidence 7899999999999999999997 3434443
No 427
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.74 E-value=0.2 Score=55.77 Aligned_cols=35 Identities=37% Similarity=0.568 Sum_probs=27.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCccccccc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p 75 (620)
=+|.+||..|+||||||+.|+|.. .| ++|.++.-+
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~-~~-~~G~i~~~~ 64 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGEL-EP-DSGEVTRPK 64 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC-cC-CCCeEeecC
Confidence 399999999999999999999985 24 445444433
No 428
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.11 Score=54.56 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 68 (620)
+|+|||+.++||||||..|+|. +-|...
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gk-l~P~~G 642 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGK-LDPNDG 642 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcC-CCCCcc
Confidence 8999999999999999999998 335443
No 429
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.71 E-value=0.028 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 430
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.026 Score=55.03 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~ 69 (620)
.++++|+.|||||||++.|.|. +|..+|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 8999999999999999999996 343444
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.67 E-value=0.028 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
-.++++|+.|||||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378999999999999999999973
No 432
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=94.65 E-value=0.057 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+--|.|+|.+-+|||.|+|.|+|.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEEEeecCCccchHHHHHHHhcc
Confidence 447899999999999999999984
No 433
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.65 E-value=0.029 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|..|+||||+|++|+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 434
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.64 E-value=0.029 Score=53.76 Aligned_cols=31 Identities=39% Similarity=0.687 Sum_probs=25.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
..+|+|+.|+||||||.+|+|. +.|. +|.|+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~-~G~v~ 59 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPD-SGEVT 59 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCC-CCeEe
Confidence 7899999999999999999998 3443 34444
No 435
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.64 E-value=0.03 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 436
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.03 Score=55.08 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 437
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.62 E-value=0.028 Score=54.55 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC-cCcccCccccccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 75 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~-~lP~~~~~~Tr~p 75 (620)
.|+|+|.+|||||||++.|.+.. .+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 69999999999999999999862 1223334566666
No 438
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.61 E-value=0.031 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 439
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.60 E-value=0.031 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 440
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.59 E-value=0.031 Score=55.38 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|..|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 441
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.58 E-value=0.033 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 442
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.57 E-value=0.031 Score=54.25 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++++|+.|||||||++.|+|.. |..+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~ 56 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI--KESSGS 56 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 78999999999999999999973 334443
No 443
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.56 E-value=0.32 Score=47.05 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (620)
.++++|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 444
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.55 E-value=0.28 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+|-.+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 445
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.53 E-value=0.032 Score=54.64 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999997
No 446
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.52 E-value=0.031 Score=54.90 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 447
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.033 Score=55.25 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++++|+.|||||||++.|+|.- |...|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 61 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSGS 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 78999999999999999999973 444443
No 448
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.032 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 449
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.033 Score=54.29 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.035 Score=52.64 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||+++|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 451
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.48 E-value=0.03 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999865
No 452
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.48 E-value=0.097 Score=60.84 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|++||..|||||||++.|+|.
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 453
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.45 E-value=0.033 Score=55.61 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-++++|+.||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999996
No 454
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.44 E-value=0.031 Score=55.46 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.|||||||++.|+|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 455
>PLN03232 ABC transporter C family member; Provisional
Probab=94.44 E-value=0.2 Score=63.10 Aligned_cols=22 Identities=41% Similarity=0.815 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|||+.|||||||+++|+|.
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~ 666 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGE 666 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999997
No 456
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.42 E-value=0.035 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|..|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999997
No 457
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.036 Score=54.78 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++|+|+.|+|||||+++|+|.. |-..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 59 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKGQ 59 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCE
Confidence 68999999999999999999973 444443
No 458
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.40 E-value=0.035 Score=54.32 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++|+|..|+|||||++.|+|.. |...|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 67 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESGQ 67 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCee
Confidence 78899999999999999999973 444453
No 459
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.40 E-value=0.037 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999997
No 460
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.40 E-value=0.037 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
-.++++|..|+|||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999973
No 461
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.38 E-value=0.038 Score=53.51 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~ 69 (620)
.++++|..|+|||||++.|+|.. |..+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 79999999999999999999973 44444
No 462
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.38 E-value=0.037 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.|||||||++.|.|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999997
No 463
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.38 E-value=0.036 Score=43.66 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 007054 41 VAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~ 61 (620)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 464
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.037 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 465
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.36 E-value=0.037 Score=54.24 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|..|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 466
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.04 Score=51.03 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
..++++|+.++|||||+++|.|.- |...|.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 478999999999999999999973 44445443
No 467
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.36 E-value=0.036 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||+++|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999973
No 468
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.34 E-value=0.11 Score=60.68 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|||+.|||||||++.|+|.
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999997
No 469
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.33 E-value=0.041 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
-.++++|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999999974
No 470
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.31 E-value=0.038 Score=53.71 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 71 (620)
.++|+|..|+|||||+++|+|.. |..+|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 65 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGKI 65 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCeE
Confidence 78999999999999999999973 4444543
No 471
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.31 E-value=0.038 Score=54.93 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 7899999999999999999997
No 472
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.28 E-value=0.039 Score=54.04 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 71 (620)
.++++|+.|||||||++.|+|.. |-.+|-+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 68899999999999999999973 4345544
No 473
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.25 E-value=0.013 Score=57.38 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.+||||||+|.|+|.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred EEEEECCCCCCceeeeeeeccc
Confidence 6899999999999999999996
No 474
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.04 Score=57.16 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 71 (620)
.++++|..|||||||++.|+|. +|..+|.+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i 64 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGTI 64 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcEE
Confidence 7999999999999999999997 34344543
No 475
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.042 Score=54.89 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.++++|..|||||||++.|+|. +|..+|.++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~ 61 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL--IDPTEGSIL 61 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 6899999999999999999997 343445433
No 476
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.21 E-value=0.04 Score=54.83 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=24.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 71 (620)
.++|+|..|||||||+++|+|.- |..+|.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i 60 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSGEI 60 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCCEE
Confidence 78999999999999999999973 4444433
No 477
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=94.21 E-value=0.033 Score=55.78 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCee
Q 007054 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (620)
Q Consensus 163 ~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~ 242 (620)
.+....+++.|+.+.|.++++.+..+.+......-++...+...+.+.++|+||+|+.+......+... .....+..++
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g~~v~ 101 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIGYQVL 101 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHH-HHHHCCCeEE
Confidence 344456677799999998776643333321222222222333357899999999999754321111111 1112334456
Q ss_pred EEeeCChhhhhcc
Q 007054 243 GIVNRSQADINRN 255 (620)
Q Consensus 243 ~v~~~s~~~~~~~ 255 (620)
.+++.++.++++.
T Consensus 102 ~~SAktg~gi~eL 114 (245)
T TIGR00157 102 MTSSKNQDGLKEL 114 (245)
T ss_pred EEecCCchhHHHH
Confidence 6666666655443
No 478
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.21 E-value=0.039 Score=53.70 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 479
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.20 E-value=0.042 Score=55.40 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 71 (620)
.++|+|..|||||||++.|+|. ++-..|.+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK--LKPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCceE
Confidence 7999999999999999999997 34445544
No 480
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.20 E-value=0.045 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|..|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 481
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.042 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999973
No 482
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.045 Score=51.63 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 483
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.19 E-value=0.043 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999997
No 484
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.18 E-value=0.044 Score=53.87 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 485
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.17 E-value=0.043 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999973
No 486
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.16 E-value=0.17 Score=57.60 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~ 69 (620)
.++++|+.|||||||++.|+|.- |..+|
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~--~~~~G 390 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVY--DPTVG 390 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCC--CCCCC
Confidence 67999999999999999999973 43444
No 487
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.15 E-value=0.045 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|..|+|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 488
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.044 Score=54.70 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999997
No 489
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.15 E-value=0.046 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999997
No 490
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.043 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|..|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 491
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.14 E-value=0.044 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 492
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.13 E-value=0.048 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|..+||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999997
No 493
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.11 E-value=0.045 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999973
No 494
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.37 Score=44.33 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 165 DIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 165 ~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
.....+++.++.+|+||+==. ..-.+.+........++-.+++|.|.++-+-+.
T Consensus 89 i~~~al~rA~~~aDvIIIDEI-GpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 89 IAIPALRRALEEADVIIIDEI-GPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HhHHHHHHHhhcCCEEEEecc-cchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 334455566677898754211 122344455566777777788998888877544
No 495
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.11 E-value=0.051 Score=51.99 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=26.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC-cCcccCccccccc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 75 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~-~lP~~~~~~Tr~p 75 (620)
.-|+++|++|||||||++.|+... -+...-..+||-|
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 468999999999999999998752 1122223455555
No 496
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.11 E-value=0.045 Score=55.20 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|..|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 497
>PRK10908 cell division protein FtsE; Provisional
Probab=94.10 E-value=0.045 Score=53.88 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++|+|+.|||||||++.|.|.. |..+|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 58 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE--RPSAGK 58 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceE
Confidence 78999999999999999999973 444443
No 498
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.08 E-value=0.044 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|..|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78899999999999999999973
No 499
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.08 E-value=0.77 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.++|||||+.+|.+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 7999999999999999999954
No 500
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.045 Score=54.37 Aligned_cols=29 Identities=38% Similarity=0.446 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~ 70 (620)
.++|+|+.|||||||++.|+|.. |...|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~ 57 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY--DVSSGS 57 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCE
Confidence 78999999999999999999973 444443
Done!