Query 007054
Match_columns 620
No_of_seqs 337 out of 2900
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.5E-95 5E-100 820.3 59.7 600 3-619 25-768 (772)
2 3szr_A Interferon-induced GTP- 100.0 2.3E-85 7.9E-90 736.2 53.5 565 14-617 30-607 (608)
3 3t34_A Dynamin-related protein 100.0 5.6E-51 1.9E-55 431.6 30.8 331 4-335 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 2.3E-46 7.9E-51 394.9 37.3 339 3-353 5-345 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 4.9E-39 1.7E-43 333.8 30.3 310 5-324 1-315 (315)
6 3ljb_A Interferon-induced GTP- 100.0 1.4E-39 4.9E-44 322.4 21.5 258 331-592 2-271 (271)
7 2aka_B Dynamin-1; fusion prote 100.0 1E-36 3.4E-41 313.8 34.2 299 4-314 1-299 (299)
8 2j69_A Bacterial dynamin-like 99.8 3.3E-19 1.1E-23 202.6 21.4 172 37-222 68-245 (695)
9 3iev_A GTP-binding protein ERA 99.6 1.9E-15 6.5E-20 155.6 10.3 165 37-260 9-177 (308)
10 1wf3_A GTP-binding protein; GT 99.6 2.4E-15 8.3E-20 154.0 10.0 124 37-222 6-132 (301)
11 3iby_A Ferrous iron transport 99.5 9E-15 3.1E-19 146.4 7.4 154 38-257 1-159 (256)
12 4dhe_A Probable GTP-binding pr 99.5 8.1E-14 2.8E-18 135.9 9.5 130 37-223 28-160 (223)
13 3t5d_A Septin-7; GTP-binding p 99.5 1.8E-13 6.2E-18 138.4 11.6 137 39-223 9-160 (274)
14 1ega_A Protein (GTP-binding pr 99.4 2.3E-14 8E-19 146.9 3.3 122 37-221 7-130 (301)
15 2xtp_A GTPase IMAP family memb 99.4 1.3E-13 4.4E-18 138.2 8.6 128 37-221 21-153 (260)
16 2qpt_A EH domain-containing pr 99.4 2.3E-13 7.9E-18 150.4 9.7 168 36-223 63-234 (550)
17 3a1s_A Iron(II) transport prot 99.4 1.7E-13 5.7E-18 137.3 7.7 151 38-258 5-160 (258)
18 3lxx_A GTPase IMAP family memb 99.4 2.4E-13 8.2E-18 134.5 8.7 130 37-223 28-161 (239)
19 1svi_A GTP-binding protein YSX 99.4 3.3E-13 1.1E-17 128.5 9.1 126 37-223 22-150 (195)
20 1xzp_A Probable tRNA modificat 99.4 2.9E-13 9.8E-18 147.0 9.2 157 39-261 244-401 (482)
21 2qu8_A Putative nucleolar GTP- 99.4 6.8E-13 2.3E-17 130.2 11.0 134 31-223 22-158 (228)
22 3b1v_A Ferrous iron uptake tra 99.4 2.1E-13 7.2E-18 137.5 7.5 149 38-257 3-156 (272)
23 3i8s_A Ferrous iron transport 99.4 1.3E-13 4.3E-18 139.5 5.6 152 38-256 3-160 (274)
24 1kao_A RAP2A; GTP-binding prot 99.4 1.1E-12 3.9E-17 120.8 11.5 107 140-259 51-160 (167)
25 3lxw_A GTPase IMAP family memb 99.4 8.3E-13 2.8E-17 131.4 11.1 129 37-221 20-153 (247)
26 3pqc_A Probable GTP-binding pr 99.4 1.4E-12 4.7E-17 123.8 11.9 124 37-223 22-149 (195)
27 1mky_A Probable GTP-binding pr 99.4 2.6E-13 8.8E-18 146.6 7.3 160 38-262 1-163 (439)
28 3gee_A MNME, tRNA modification 99.4 1.5E-13 5.1E-18 149.0 5.4 158 38-259 233-392 (476)
29 2g6b_A RAS-related protein RAB 99.4 7.3E-13 2.5E-17 124.2 9.4 122 37-223 9-132 (180)
30 2dyk_A GTP-binding protein; GT 99.4 5.4E-13 1.8E-17 122.6 8.3 149 38-254 1-151 (161)
31 3geh_A MNME, tRNA modification 99.4 2.3E-13 7.9E-18 147.0 6.4 154 39-259 225-378 (462)
32 2qtf_A Protein HFLX, GTP-bindi 99.4 2.6E-12 9E-17 134.8 13.7 127 37-223 178-308 (364)
33 3tkl_A RAS-related protein RAB 99.4 1.5E-12 5E-17 124.0 10.8 157 37-259 15-173 (196)
34 3k53_A Ferrous iron transport 99.4 1.9E-12 6.7E-17 130.5 11.7 152 38-260 3-161 (271)
35 2hjg_A GTP-binding protein ENG 99.4 1.2E-12 4.2E-17 141.2 10.7 156 38-259 3-159 (436)
36 1z0f_A RAB14, member RAS oncog 99.4 1.5E-12 5E-17 121.8 9.1 152 37-254 14-167 (179)
37 3q72_A GTP-binding protein RAD 99.4 1.5E-12 5.1E-17 120.3 9.0 117 38-223 2-122 (166)
38 4dcu_A GTP-binding protein ENG 99.3 1.4E-12 4.8E-17 141.5 10.2 125 37-222 22-146 (456)
39 3bc1_A RAS-related protein RAB 99.3 5.2E-12 1.8E-16 119.6 12.9 69 140-222 70-142 (195)
40 1zbd_A Rabphilin-3A; G protein 99.3 3.2E-12 1.1E-16 122.6 11.5 120 37-222 7-128 (203)
41 2bme_A RAB4A, RAS-related prot 99.3 2.2E-12 7.5E-17 121.7 10.1 120 37-222 9-130 (186)
42 2oil_A CATX-8, RAS-related pro 99.3 1.8E-12 6.3E-17 123.2 9.2 120 37-222 24-145 (193)
43 2nzj_A GTP-binding protein REM 99.3 2.1E-12 7.1E-17 120.4 9.3 121 37-222 3-126 (175)
44 2il1_A RAB12; G-protein, GDP, 99.3 2.3E-12 7.7E-17 122.8 9.6 121 36-222 24-146 (192)
45 1g16_A RAS-related protein SEC 99.3 1.3E-12 4.3E-17 121.1 7.6 117 38-221 3-122 (170)
46 3tw8_B RAS-related protein RAB 99.3 6.7E-13 2.3E-17 124.3 5.7 119 36-222 7-128 (181)
47 1z08_A RAS-related protein RAB 99.3 1.1E-12 3.9E-17 121.5 7.2 153 37-255 5-159 (170)
48 2a9k_A RAS-related protein RAL 99.3 4.2E-12 1.4E-16 119.5 11.3 119 37-222 17-138 (187)
49 2cxx_A Probable GTP-binding pr 99.3 3.9E-12 1.4E-16 120.2 11.1 123 38-223 1-138 (190)
50 1u8z_A RAS-related protein RAL 99.3 2.6E-12 8.8E-17 118.5 9.6 118 38-222 4-124 (168)
51 3cph_A RAS-related protein SEC 99.3 2.1E-12 7.1E-17 124.8 9.1 158 37-261 19-178 (213)
52 2lkc_A Translation initiation 99.3 2.2E-12 7.6E-17 120.6 9.0 154 36-259 6-165 (178)
53 1z0j_A RAB-22, RAS-related pro 99.3 2.3E-12 7.9E-17 119.3 8.9 120 38-223 6-127 (170)
54 2gj8_A MNME, tRNA modification 99.3 1.8E-12 6.2E-17 121.3 8.3 78 140-222 52-130 (172)
55 4dcu_A GTP-binding protein ENG 99.3 1.2E-12 4.2E-17 142.0 8.1 130 37-224 194-323 (456)
56 2bov_A RAla, RAS-related prote 99.3 5.3E-12 1.8E-16 121.1 11.4 156 37-259 13-171 (206)
57 2fg5_A RAB-22B, RAS-related pr 99.3 1.2E-12 4.1E-17 124.6 6.7 154 37-256 22-177 (192)
58 2hjg_A GTP-binding protein ENG 99.3 1.2E-12 4.1E-17 141.3 7.5 130 37-224 174-303 (436)
59 3clv_A RAB5 protein, putative; 99.3 4.1E-12 1.4E-16 121.3 10.4 65 140-218 93-158 (208)
60 1c1y_A RAS-related protein RAP 99.3 2.7E-12 9.1E-17 118.5 8.5 117 39-222 4-123 (167)
61 2erx_A GTP-binding protein DI- 99.3 2.6E-12 8.9E-17 119.1 7.8 102 140-254 51-156 (172)
62 2fn4_A P23, RAS-related protei 99.3 2.8E-12 9.7E-17 120.0 8.0 119 37-222 8-129 (181)
63 2f7s_A C25KG, RAS-related prot 99.3 6.9E-12 2.4E-16 121.7 11.1 104 140-257 84-191 (217)
64 3dz8_A RAS-related protein RAB 99.3 2.5E-12 8.6E-17 122.2 7.7 121 36-222 21-143 (191)
65 2gf9_A RAS-related protein RAB 99.3 3.5E-12 1.2E-16 121.0 8.6 120 37-222 21-142 (189)
66 2ew1_A RAS-related protein RAB 99.3 4.9E-12 1.7E-16 121.7 9.7 120 37-222 25-146 (201)
67 4djt_A GTP-binding nuclear pro 99.3 1.5E-12 5.1E-17 126.5 6.2 110 140-262 61-172 (218)
68 2bcg_Y Protein YP2, GTP-bindin 99.3 4.2E-12 1.4E-16 122.1 9.1 119 37-222 7-128 (206)
69 2y8e_A RAB-protein 6, GH09086P 99.3 2.4E-12 8.1E-17 120.3 7.2 150 39-254 15-166 (179)
70 1ek0_A Protein (GTP-binding pr 99.3 4E-12 1.4E-16 117.6 8.6 117 39-222 4-123 (170)
71 2wji_A Ferrous iron transport 99.3 2.1E-12 7.2E-17 119.8 6.6 117 39-221 4-122 (165)
72 4dsu_A GTPase KRAS, isoform 2B 99.3 6E-12 2.1E-16 118.7 9.9 152 39-258 5-159 (189)
73 2ce2_X GTPase HRAS; signaling 99.3 4.2E-12 1.4E-16 116.7 8.5 148 39-254 4-154 (166)
74 1upt_A ARL1, ADP-ribosylation 99.3 4.5E-12 1.5E-16 117.6 8.7 115 37-223 6-124 (171)
75 2o52_A RAS-related protein RAB 99.3 3.4E-12 1.2E-16 122.4 8.1 156 37-259 24-182 (200)
76 3kkq_A RAS-related protein M-R 99.3 5.5E-12 1.9E-16 118.6 9.3 153 37-256 17-173 (183)
77 3oes_A GTPase rhebl1; small GT 99.3 2.3E-12 8E-17 123.6 6.8 156 37-260 23-182 (201)
78 2efe_B Small GTP-binding prote 99.3 7.9E-12 2.7E-16 117.2 10.2 151 37-254 11-164 (181)
79 2h57_A ADP-ribosylation factor 99.3 6.9E-12 2.3E-16 119.0 9.7 117 37-222 20-141 (190)
80 1z06_A RAS-related protein RAB 99.3 8.9E-12 3E-16 118.1 10.5 147 37-249 19-169 (189)
81 2a5j_A RAS-related protein RAB 99.3 4.8E-12 1.6E-16 120.3 8.4 120 37-222 20-141 (191)
82 1wms_A RAB-9, RAB9, RAS-relate 99.3 1.3E-11 4.4E-16 115.2 11.1 151 37-256 6-165 (177)
83 4bas_A ADP-ribosylation factor 99.3 8.8E-12 3E-16 118.8 9.9 118 36-223 15-143 (199)
84 1ky3_A GTP-binding protein YPT 99.3 6.4E-12 2.2E-16 117.7 8.7 153 37-257 7-170 (182)
85 1z2a_A RAS-related protein RAB 99.3 3.1E-12 1.1E-16 118.2 6.4 118 38-222 5-124 (168)
86 3q85_A GTP-binding protein REM 99.3 7.1E-12 2.4E-16 116.1 8.6 104 140-255 51-157 (169)
87 2hup_A RAS-related protein RAB 99.3 1.1E-11 3.8E-16 119.0 10.2 120 37-222 28-149 (201)
88 3qq5_A Small GTP-binding prote 99.3 9.2E-12 3.2E-16 132.8 10.4 159 37-261 33-192 (423)
89 1r2q_A RAS-related protein RAB 99.3 9.1E-12 3.1E-16 115.1 8.9 70 140-222 55-126 (170)
90 1lnz_A SPO0B-associated GTP-bi 99.3 1.2E-12 4.1E-17 136.0 3.2 159 38-258 158-323 (342)
91 3t5g_A GTP-binding protein RHE 99.3 6.5E-12 2.2E-16 117.9 7.7 156 37-260 5-164 (181)
92 1r8s_A ADP-ribosylation factor 99.3 1.9E-11 6.4E-16 112.6 10.6 111 40-222 2-116 (164)
93 1h65_A Chloroplast outer envel 99.3 2.1E-11 7.3E-16 122.8 11.8 142 11-223 22-170 (270)
94 1zd9_A ADP-ribosylation factor 99.2 3.8E-11 1.3E-15 113.8 12.6 114 38-222 22-139 (188)
95 2p5s_A RAS and EF-hand domain 99.2 8.9E-12 3.1E-16 119.3 8.3 118 37-220 27-146 (199)
96 2yc2_C IFT27, small RAB-relate 99.2 7.8E-12 2.7E-16 120.0 7.6 69 140-221 73-146 (208)
97 1vg8_A RAS-related protein RAB 99.2 1.1E-11 3.9E-16 118.9 8.8 120 37-222 7-132 (207)
98 3con_A GTPase NRAS; structural 99.2 2E-11 6.8E-16 115.6 10.3 117 38-222 21-141 (190)
99 2fu5_C RAS-related protein RAB 99.2 4.3E-12 1.5E-16 119.4 5.6 70 140-222 57-128 (183)
100 2atv_A RERG, RAS-like estrogen 99.2 1.5E-11 5E-16 117.4 8.9 118 37-222 27-147 (196)
101 1ksh_A ARF-like protein 2; sma 99.2 3.1E-11 1.1E-15 113.8 11.1 115 37-223 17-135 (186)
102 2hxs_A RAB-26, RAS-related pro 99.2 5.8E-12 2E-16 117.7 5.5 155 38-257 6-165 (178)
103 2ged_A SR-beta, signal recogni 99.2 3.2E-11 1.1E-15 114.5 10.6 118 37-223 47-172 (193)
104 2fh5_B SR-beta, signal recogni 99.2 4.7E-11 1.6E-15 115.5 11.7 120 37-223 6-131 (214)
105 2e87_A Hypothetical protein PH 99.2 7.3E-11 2.5E-15 123.9 14.0 127 36-222 165-295 (357)
106 1zj6_A ADP-ribosylation factor 99.2 4E-11 1.4E-15 113.4 10.9 149 37-257 15-170 (187)
107 2wjg_A FEOB, ferrous iron tran 99.2 5.5E-12 1.9E-16 119.2 4.9 119 37-221 6-126 (188)
108 1x3s_A RAS-related protein RAB 99.2 1.9E-11 6.4E-16 116.0 8.5 155 37-259 14-172 (195)
109 2x77_A ADP-ribosylation factor 99.2 7.1E-12 2.4E-16 118.7 5.2 115 37-223 21-139 (189)
110 3cbq_A GTP-binding protein REM 99.2 5.4E-11 1.8E-15 113.7 10.7 106 140-257 72-180 (195)
111 3l0i_B RAS-related protein RAB 99.2 1.3E-12 4.5E-17 125.1 -1.0 148 37-254 32-185 (199)
112 2gf0_A GTP-binding protein DI- 99.2 3.4E-11 1.2E-15 114.7 8.8 152 37-256 7-162 (199)
113 2h17_A ADP-ribosylation factor 99.2 3.8E-11 1.3E-15 112.9 8.7 114 37-222 20-137 (181)
114 3cpj_B GTP-binding protein YPT 99.2 1.2E-11 4.1E-16 120.7 5.4 119 37-222 12-133 (223)
115 3def_A T7I23.11 protein; chlor 99.2 6.9E-11 2.3E-15 118.5 10.8 125 37-222 35-166 (262)
116 4a9a_A Ribosome-interacting GT 99.2 2.5E-11 8.6E-16 127.0 7.7 122 37-220 71-195 (376)
117 2q3h_A RAS homolog gene family 99.2 3.3E-11 1.1E-15 115.2 7.7 119 36-222 18-139 (201)
118 3llu_A RAS-related GTP-binding 99.2 1.1E-10 3.9E-15 111.3 11.4 120 37-222 19-144 (196)
119 3t1o_A Gliding protein MGLA; G 99.2 1.5E-10 5E-15 109.9 12.0 70 140-222 74-150 (198)
120 1moz_A ARL1, ADP-ribosylation 99.2 2.5E-11 8.5E-16 114.0 6.5 114 37-222 17-134 (183)
121 1fzq_A ADP-ribosylation factor 99.2 2.4E-10 8.1E-15 107.6 13.0 115 37-223 15-133 (181)
122 2gco_A H9, RHO-related GTP-bin 99.2 2.4E-11 8.3E-16 116.5 6.2 117 38-222 25-144 (201)
123 1mh1_A RAC1; GTP-binding, GTPa 99.2 2.8E-11 9.7E-16 113.7 6.5 117 38-222 5-124 (186)
124 3c5c_A RAS-like protein 12; GD 99.2 3E-11 1E-15 114.4 6.5 151 39-257 22-178 (187)
125 2fv8_A H6, RHO-related GTP-bin 99.1 2.4E-11 8.2E-16 117.1 5.2 116 39-222 26-144 (207)
126 2b6h_A ADP-ribosylation factor 99.1 5.3E-11 1.8E-15 113.3 7.4 114 37-222 28-145 (192)
127 2atx_A Small GTP binding prote 99.1 5.1E-11 1.8E-15 113.2 7.3 117 38-222 18-137 (194)
128 3reg_A RHO-like small GTPase; 99.1 2.5E-11 8.6E-16 115.5 5.2 152 37-256 22-179 (194)
129 2j1l_A RHO-related GTP-binding 99.1 3.9E-11 1.3E-15 116.3 5.8 116 39-222 35-153 (214)
130 1m2o_B GTP-binding protein SAR 99.1 2.4E-10 8E-15 108.6 11.1 113 37-221 22-138 (190)
131 1mky_A Probable GTP-binding pr 99.1 4E-11 1.4E-15 129.4 6.1 129 37-223 179-308 (439)
132 1f6b_A SAR1; gtpases, N-termin 99.1 1.6E-10 5.5E-15 110.6 9.0 113 37-221 24-140 (198)
133 1wxq_A GTP-binding protein; st 99.1 1.5E-11 5.3E-16 130.4 1.8 38 40-77 2-39 (397)
134 3bwd_D RAC-like GTP-binding pr 99.1 2.6E-11 9E-16 113.6 3.0 118 37-222 7-127 (182)
135 2iwr_A Centaurin gamma 1; ANK 99.1 1.8E-10 6.2E-15 107.6 8.7 25 39-63 8-32 (178)
136 2j0v_A RAC-like GTP-binding pr 99.1 5.1E-11 1.8E-15 115.0 4.9 117 38-222 9-128 (212)
137 3q3j_B RHO-related GTP-binding 99.1 1.3E-10 4.4E-15 112.7 7.5 118 37-222 26-146 (214)
138 3th5_A RAS-related C3 botulinu 98.7 1.3E-11 4.4E-16 118.6 0.0 69 140-222 78-149 (204)
139 1m7b_A RND3/RHOE small GTP-bin 99.1 1.6E-10 5.4E-15 109.0 7.5 116 38-221 7-125 (184)
140 4gzl_A RAS-related C3 botulinu 99.1 3.4E-11 1.2E-15 115.8 2.8 119 37-223 29-150 (204)
141 4dkx_A RAS-related protein RAB 99.1 2.6E-10 9E-15 110.8 8.9 105 140-257 62-168 (216)
142 3ihw_A Centg3; RAS, centaurin, 99.1 3.3E-10 1.1E-14 107.0 9.4 147 38-258 20-173 (184)
143 2qag_A Septin-2, protein NEDD5 99.1 2.2E-10 7.5E-15 120.2 8.4 110 140-251 95-220 (361)
144 2g3y_A GTP-binding protein GEM 99.0 4.1E-10 1.4E-14 109.0 9.3 105 141-257 88-195 (211)
145 3r7w_A Gtpase1, GTP-binding pr 99.0 3.3E-10 1.1E-14 116.2 9.1 75 139-221 51-129 (307)
146 1gwn_A RHO-related GTP-binding 99.0 2.8E-10 9.7E-15 109.6 8.1 117 37-221 27-146 (205)
147 3dpu_A RAB family protein; roc 99.0 7.1E-10 2.4E-14 122.7 12.4 107 139-260 97-203 (535)
148 1nrj_B SR-beta, signal recogni 99.0 1.2E-09 4.2E-14 105.7 12.5 116 36-223 10-136 (218)
149 3gj0_A GTP-binding nuclear pro 99.0 7.3E-11 2.5E-15 114.8 3.7 105 140-260 64-170 (221)
150 3o47_A ADP-ribosylation factor 99.0 1.7E-10 5.7E-15 119.6 6.6 113 40-223 167-282 (329)
151 3izy_P Translation initiation 99.0 5.9E-11 2E-15 129.9 1.9 117 37-222 3-119 (537)
152 3lvq_E ARF-GAP with SH3 domain 99.0 1.1E-09 3.9E-14 120.0 10.7 113 39-223 323-439 (497)
153 2wkq_A NPH1-1, RAS-related C3 99.0 4.5E-10 1.5E-14 116.1 7.0 118 37-222 154-274 (332)
154 3sjy_A Translation initiation 99.0 2.2E-09 7.4E-14 114.5 11.5 69 140-223 75-145 (403)
155 3izq_1 HBS1P, elongation facto 98.9 1.7E-09 5.8E-14 120.9 10.9 145 37-221 166-319 (611)
156 3p26_A Elongation factor 1 alp 98.9 9.7E-10 3.3E-14 120.0 8.3 82 125-222 97-186 (483)
157 1wb1_A Translation elongation 98.9 1.3E-09 4.4E-14 118.7 9.2 67 139-222 72-140 (482)
158 2cjw_A GTP-binding protein GEM 98.9 1.1E-09 3.8E-14 104.1 7.1 69 141-221 57-128 (192)
159 3j2k_7 ERF3, eukaryotic polype 98.9 2.8E-09 9.5E-14 114.8 10.8 68 139-222 94-170 (439)
160 2zej_A Dardarin, leucine-rich 98.9 1.2E-09 4.1E-14 103.0 6.8 70 139-222 55-127 (184)
161 2f9l_A RAB11B, member RAS onco 98.9 2.1E-09 7.2E-14 102.7 7.9 27 37-63 4-30 (199)
162 3tr5_A RF-3, peptide chain rel 98.9 2E-09 6.9E-14 118.1 7.9 138 37-222 12-149 (528)
163 1s0u_A EIF-2-gamma, translatio 98.8 3.4E-08 1.2E-12 105.4 15.1 69 140-223 81-151 (408)
164 1kk1_A EIF2gamma; initiation o 98.8 1.2E-08 4.2E-13 108.9 11.5 68 140-222 83-152 (410)
165 2www_A Methylmalonic aciduria 98.8 4.9E-09 1.7E-13 109.4 8.1 25 37-61 73-97 (349)
166 1zo1_I IF2, translation initia 98.8 1.1E-09 3.8E-14 118.8 2.4 113 37-221 3-117 (501)
167 2ywe_A GTP-binding protein LEP 98.8 7.4E-09 2.5E-13 114.8 8.6 134 37-222 5-140 (600)
168 3p32_A Probable GTPase RV1496/ 98.8 2.4E-08 8E-13 104.6 11.9 25 37-61 78-102 (355)
169 1udx_A The GTP-binding protein 98.8 8.5E-09 2.9E-13 109.5 8.2 125 38-222 157-284 (416)
170 2qag_B Septin-6, protein NEDD5 98.8 9.3E-09 3.2E-13 108.9 8.4 82 140-223 95-192 (427)
171 1pui_A ENGB, probable GTP-bind 98.8 1.2E-08 4.1E-13 97.9 8.4 78 141-223 73-153 (210)
172 1g7s_A Translation initiation 98.8 3.8E-09 1.3E-13 117.4 5.4 67 140-221 70-136 (594)
173 1oix_A RAS-related protein RAB 98.8 8.9E-09 3.1E-13 97.7 7.1 27 37-63 28-54 (191)
174 2elf_A Protein translation elo 98.8 2E-08 7E-13 105.4 10.3 62 140-219 60-125 (370)
175 1zun_B Sulfate adenylate trans 98.7 1.9E-08 6.5E-13 108.2 10.0 69 138-222 102-172 (434)
176 2qag_C Septin-7; cell cycle, c 98.7 3.5E-08 1.2E-12 104.9 11.9 81 140-222 88-182 (418)
177 2h5e_A Peptide chain release f 98.7 2.4E-08 8.3E-13 109.7 10.8 70 139-223 81-150 (529)
178 3cb4_D GTP-binding protein LEP 98.7 7.2E-09 2.5E-13 115.1 6.4 66 140-222 71-138 (599)
179 1f60_A Elongation factor EEF1A 98.7 6.4E-09 2.2E-13 112.6 5.3 144 37-221 6-159 (458)
180 1jal_A YCHF protein; nucleotid 98.7 7.1E-09 2.4E-13 107.8 4.0 37 39-75 3-39 (363)
181 1jny_A EF-1-alpha, elongation 98.7 3.4E-08 1.2E-12 106.3 8.8 69 139-222 83-159 (435)
182 2c78_A Elongation factor TU-A; 98.7 5.5E-08 1.9E-12 103.6 10.2 68 138-221 73-142 (405)
183 3ec1_A YQEH GTPase; atnos1, at 98.6 3.2E-09 1.1E-13 111.6 -0.0 23 39-61 163-185 (369)
184 2xex_A Elongation factor G; GT 98.6 2.5E-08 8.5E-13 113.2 6.6 69 139-222 74-142 (693)
185 2qnr_A Septin-2, protein NEDD5 98.6 3.4E-08 1.2E-12 100.8 6.6 118 140-260 76-209 (301)
186 2ohf_A Protein OLA1, GTP-bindi 98.6 3.7E-08 1.3E-12 103.4 6.6 106 37-186 21-126 (396)
187 1d2e_A Elongation factor TU (E 98.6 1.5E-07 5.2E-12 99.9 11.2 68 138-221 64-133 (397)
188 3c5h_A Glucocorticoid receptor 98.6 2.5E-08 8.5E-13 99.3 4.1 25 37-61 18-51 (255)
189 1dar_A EF-G, elongation factor 98.6 9E-08 3.1E-12 108.6 9.0 69 139-222 76-144 (691)
190 3h2y_A GTPase family protein; 98.6 1E-08 3.6E-13 107.6 0.9 24 39-62 161-184 (368)
191 3mca_A HBS1, elongation factor 98.5 6.2E-09 2.1E-13 116.0 -1.2 67 139-221 254-329 (592)
192 1r5b_A Eukaryotic peptide chai 98.5 1E-07 3.5E-12 103.4 8.1 67 139-221 120-195 (467)
193 2rdo_7 EF-G, elongation factor 98.5 3.1E-07 1.1E-11 104.3 11.9 68 140-222 82-149 (704)
194 2dby_A GTP-binding protein; GD 98.5 9E-08 3.1E-12 100.1 6.8 109 39-187 2-110 (368)
195 3sop_A Neuronal-specific septi 98.5 1.5E-07 5.1E-12 94.4 8.1 82 140-223 60-156 (270)
196 2p67_A LAO/AO transport system 98.5 7.5E-07 2.6E-11 92.5 13.3 25 37-61 55-79 (341)
197 1n0u_A EF-2, elongation factor 98.4 1.1E-07 3.7E-12 110.2 5.8 67 139-220 97-163 (842)
198 2j37_W Signal recognition part 98.4 3.9E-07 1.3E-11 98.9 9.3 78 139-228 183-261 (504)
199 2qm8_A GTPase/ATPase; G protei 98.4 2.1E-06 7.3E-11 88.8 14.0 25 37-61 54-78 (337)
200 3avx_A Elongation factor TS, e 98.4 3.2E-07 1.1E-11 106.9 8.2 68 138-221 357-426 (1289)
201 1f5n_A Interferon-induced guan 98.3 1.1E-06 3.7E-11 97.0 10.3 27 37-63 37-63 (592)
202 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 3.5E-07 1.2E-11 96.2 6.1 41 37-77 19-60 (392)
203 1yrb_A ATP(GTP)binding protein 98.3 1.4E-06 4.9E-11 86.5 10.3 28 37-64 13-45 (262)
204 2dy1_A Elongation factor G; tr 98.3 5.3E-07 1.8E-11 101.9 7.3 132 37-220 8-139 (665)
205 3r7w_B Gtpase2, GTP-binding pr 98.3 3.2E-06 1.1E-10 86.3 11.8 72 139-222 45-121 (331)
206 3dm5_A SRP54, signal recogniti 98.3 2.6E-06 9E-11 90.6 11.6 81 139-230 182-262 (443)
207 1tq4_A IIGP1, interferon-induc 98.3 3.6E-06 1.2E-10 89.1 11.8 119 38-220 69-188 (413)
208 1puj_A YLQF, conserved hypothe 98.2 8.5E-07 2.9E-11 89.5 4.7 26 38-63 120-145 (282)
209 3vqt_A RF-3, peptide chain rel 98.2 1.5E-06 5.2E-11 95.7 6.2 69 138-221 98-166 (548)
210 3j25_A Tetracycline resistance 98.1 2E-06 6.8E-11 96.7 6.1 71 137-222 64-134 (638)
211 2wsm_A Hydrogenase expression/ 98.1 8.9E-07 3E-11 85.6 2.3 25 37-61 29-53 (221)
212 3kl4_A SRP54, signal recogniti 98.0 2.6E-06 9.1E-11 90.5 4.8 82 139-229 179-260 (433)
213 4fn5_A EF-G 1, elongation fact 98.0 3.8E-06 1.3E-10 95.8 6.2 136 37-221 12-151 (709)
214 2v3c_C SRP54, signal recogniti 98.0 1.6E-05 5.4E-10 84.9 10.7 79 138-228 179-259 (432)
215 3cnl_A YLQF, putative uncharac 97.9 6.5E-06 2.2E-10 82.0 4.2 25 39-63 100-124 (262)
216 2hf9_A Probable hydrogenase ni 97.8 1.1E-05 3.6E-10 78.2 4.8 26 37-62 37-62 (226)
217 1rj9_A FTSY, signal recognitio 97.8 7.1E-05 2.4E-09 76.1 10.7 86 140-230 185-270 (304)
218 2yhs_A FTSY, cell division pro 97.7 4E-05 1.4E-09 82.3 7.2 83 140-231 376-462 (503)
219 3e70_C DPA, signal recognition 97.7 0.00019 6.4E-09 73.7 10.9 80 140-230 212-291 (328)
220 2xxa_A Signal recognition part 97.6 5.5E-05 1.9E-09 80.8 7.0 79 139-229 183-262 (433)
221 1j8m_F SRP54, signal recogniti 97.6 0.00017 5.7E-09 73.1 9.8 82 139-229 180-261 (297)
222 3q5d_A Atlastin-1; G protein, 97.6 9E-05 3.1E-09 79.0 7.6 25 37-61 66-90 (447)
223 1vma_A Cell division protein F 97.5 4.9E-05 1.7E-09 77.3 3.7 84 139-231 186-273 (306)
224 1zu4_A FTSY; GTPase, signal re 97.3 0.0012 4.2E-08 67.4 12.0 83 139-230 191-277 (320)
225 2px0_A Flagellar biosynthesis 97.3 0.0014 4.7E-08 66.3 11.5 80 139-231 182-263 (296)
226 2og2_A Putative signal recogni 97.2 0.00065 2.2E-08 70.4 8.6 85 141-230 242-326 (359)
227 2ffh_A Protein (FFH); SRP54, s 97.2 0.00031 1E-08 74.5 5.6 80 139-229 180-259 (425)
228 3b9q_A Chloroplast SRP recepto 97.1 0.00069 2.4E-08 68.7 7.5 85 141-230 185-269 (302)
229 1ls1_A Signal recognition part 96.8 0.0028 9.5E-08 64.0 8.3 81 139-230 180-260 (295)
230 1t9h_A YLOQ, probable GTPase E 96.6 0.00074 2.5E-08 68.5 2.8 24 39-62 174-197 (307)
231 4ido_A Atlastin-1; GTPase, GTP 96.0 0.0058 2E-07 64.8 5.2 22 38-59 67-88 (457)
232 2yv5_A YJEQ protein; hydrolase 95.8 0.014 4.8E-07 59.0 7.1 21 40-61 167-187 (302)
233 4dzz_A Plasmid partitioning pr 95.5 0.025 8.6E-07 53.0 7.2 67 139-220 75-143 (206)
234 3ney_A 55 kDa erythrocyte memb 95.1 0.0078 2.7E-07 56.7 2.3 23 39-61 20-42 (197)
235 1ye8_A Protein THEP1, hypothet 95.0 0.0094 3.2E-07 55.3 2.5 22 40-61 2-23 (178)
236 2rcn_A Probable GTPase ENGC; Y 95.0 0.014 4.9E-07 60.2 4.1 23 40-62 217-239 (358)
237 1kgd_A CASK, peripheral plasma 94.9 0.0096 3.3E-07 55.1 2.3 23 39-61 6-28 (180)
238 1lvg_A Guanylate kinase, GMP k 94.9 0.0096 3.3E-07 56.1 2.3 22 40-61 6-27 (198)
239 3c8u_A Fructokinase; YP_612366 94.9 0.011 3.8E-07 56.1 2.7 23 39-61 23-45 (208)
240 2pcj_A ABC transporter, lipopr 94.8 0.012 4.1E-07 56.7 2.9 23 40-62 32-54 (224)
241 4g1u_C Hemin import ATP-bindin 94.8 0.015 5.3E-07 57.5 3.6 22 40-61 39-60 (266)
242 1znw_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 56.0 2.4 22 40-61 22-43 (207)
243 1sgw_A Putative ABC transporte 94.8 0.014 4.9E-07 55.8 3.1 22 40-61 37-58 (214)
244 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.013 4.6E-07 59.9 3.1 31 40-72 173-203 (330)
245 1zp6_A Hypothetical protein AT 94.7 0.014 4.8E-07 54.2 2.9 22 40-61 11-32 (191)
246 1g6h_A High-affinity branched- 94.7 0.014 4.9E-07 57.5 3.1 23 40-62 35-57 (257)
247 1mv5_A LMRA, multidrug resista 94.7 0.019 6.4E-07 56.1 3.9 23 40-62 30-52 (243)
248 3gfo_A Cobalt import ATP-bindi 94.7 0.015 5E-07 58.0 3.1 22 40-61 36-57 (275)
249 2gza_A Type IV secretion syste 94.7 0.015 5.2E-07 60.3 3.3 31 40-72 177-207 (361)
250 1u0l_A Probable GTPase ENGC; p 94.7 0.018 6E-07 58.2 3.7 24 39-62 170-193 (301)
251 1ex7_A Guanylate kinase; subst 94.7 0.012 4E-07 55.0 2.1 35 41-75 4-40 (186)
252 3tif_A Uncharacterized ABC tra 94.7 0.015 5.2E-07 56.4 3.1 23 40-62 33-55 (235)
253 2pze_A Cystic fibrosis transme 94.6 0.016 5.6E-07 56.0 3.1 22 40-61 36-57 (229)
254 1b0u_A Histidine permease; ABC 94.6 0.016 5.6E-07 57.2 3.1 23 40-62 34-56 (262)
255 3tr0_A Guanylate kinase, GMP k 94.5 0.013 4.6E-07 55.0 2.3 22 40-61 9-30 (205)
256 2oap_1 GSPE-2, type II secreti 94.5 0.015 5.3E-07 63.1 3.1 31 40-72 262-292 (511)
257 3tau_A Guanylate kinase, GMP k 94.5 0.017 5.9E-07 54.7 3.1 23 39-61 9-31 (208)
258 1ji0_A ABC transporter; ATP bi 94.5 0.018 6.1E-07 56.1 3.1 23 40-62 34-56 (240)
259 1vpl_A ABC transporter, ATP-bi 94.4 0.018 6.3E-07 56.6 3.1 23 40-62 43-65 (256)
260 1s96_A Guanylate kinase, GMP k 94.4 0.015 5.1E-07 55.9 2.3 23 39-61 17-39 (219)
261 2d2e_A SUFC protein; ABC-ATPas 94.4 0.017 5.8E-07 56.7 2.8 22 40-61 31-52 (250)
262 2olj_A Amino acid ABC transpor 94.4 0.019 6.6E-07 56.7 3.1 23 40-62 52-74 (263)
263 3a00_A Guanylate kinase, GMP k 94.3 0.016 5.5E-07 53.9 2.3 22 40-61 3-24 (186)
264 2nq2_C Hypothetical ABC transp 94.3 0.02 6.7E-07 56.3 3.1 31 40-72 33-63 (253)
265 1z6g_A Guanylate kinase; struc 94.3 0.016 5.5E-07 55.5 2.4 22 40-61 25-46 (218)
266 2cbz_A Multidrug resistance-as 94.3 0.021 7.3E-07 55.4 3.2 23 40-62 33-55 (237)
267 2onk_A Molybdate/tungstate ABC 94.3 0.02 7E-07 55.7 3.0 24 39-62 25-48 (240)
268 1np6_A Molybdopterin-guanine d 94.3 0.02 6.9E-07 52.8 2.8 25 37-61 5-29 (174)
269 2ihy_A ABC transporter, ATP-bi 94.2 0.023 7.7E-07 56.7 3.3 23 40-62 49-71 (279)
270 2ixe_A Antigen peptide transpo 94.2 0.023 8E-07 56.4 3.3 23 40-62 47-69 (271)
271 1u0l_A Probable GTPase ENGC; p 94.2 0.021 7.3E-07 57.6 3.1 97 141-254 64-162 (301)
272 2yz2_A Putative ABC transporte 94.2 0.022 7.6E-07 56.4 3.1 23 40-62 35-57 (266)
273 4gp7_A Metallophosphoesterase; 94.1 0.024 8.2E-07 51.9 3.0 21 40-60 11-31 (171)
274 2zu0_C Probable ATP-dependent 94.1 0.022 7.4E-07 56.5 2.8 22 40-61 48-69 (267)
275 2ff7_A Alpha-hemolysin translo 94.1 0.026 8.8E-07 55.3 3.3 23 40-62 37-59 (247)
276 2qi9_C Vitamin B12 import ATP- 94.1 0.024 8.3E-07 55.5 3.0 23 40-62 28-50 (249)
277 1htw_A HI0065; nucleotide-bind 94.0 0.021 7.3E-07 51.7 2.4 22 40-61 35-56 (158)
278 3nh6_A ATP-binding cassette SU 93.9 0.019 6.6E-07 58.0 2.1 22 40-61 82-103 (306)
279 2eyu_A Twitching motility prot 93.9 0.022 7.5E-07 56.3 2.4 22 40-61 27-48 (261)
280 2ghi_A Transport protein; mult 93.9 0.029 1E-06 55.3 3.3 23 40-62 48-70 (260)
281 3asz_A Uridine kinase; cytidin 93.8 0.023 7.9E-07 53.7 2.3 22 40-61 8-29 (211)
282 1kag_A SKI, shikimate kinase I 93.8 0.024 8E-07 51.7 2.3 23 39-61 5-27 (173)
283 2v9p_A Replication protein E1; 93.8 0.025 8.5E-07 57.1 2.5 22 40-61 128-149 (305)
284 2j41_A Guanylate kinase; GMP, 93.7 0.027 9.3E-07 52.9 2.5 22 40-61 8-29 (207)
285 1zcb_A G alpha I/13; GTP-bindi 93.6 0.045 1.5E-06 56.7 4.3 70 139-221 200-282 (362)
286 2f1r_A Molybdopterin-guanine d 93.6 0.015 5E-07 53.6 0.5 23 39-61 3-25 (171)
287 3b85_A Phosphate starvation-in 93.5 0.023 8E-07 54.0 1.7 22 40-61 24-45 (208)
288 2bbw_A Adenylate kinase 4, AK4 93.4 0.042 1.4E-06 53.5 3.4 24 39-62 28-54 (246)
289 2bdt_A BH3686; alpha-beta prot 93.4 0.031 1.1E-06 51.8 2.4 21 40-60 4-24 (189)
290 4eun_A Thermoresistant glucoki 93.4 0.03 1E-06 52.6 2.3 23 39-61 30-52 (200)
291 2pjz_A Hypothetical protein ST 93.4 0.04 1.4E-06 54.4 3.2 23 40-62 32-54 (263)
292 3lw7_A Adenylate kinase relate 93.2 0.045 1.6E-06 49.5 3.2 20 39-58 2-21 (179)
293 3jvv_A Twitching mobility prot 93.1 0.034 1.1E-06 57.5 2.3 22 40-61 125-146 (356)
294 2yv5_A YJEQ protein; hydrolase 93.1 0.023 7.8E-07 57.4 1.0 54 169-222 72-125 (302)
295 2i3b_A HCR-ntpase, human cance 93.1 0.036 1.2E-06 51.8 2.3 22 40-61 3-24 (189)
296 2bbs_A Cystic fibrosis transme 93.1 0.042 1.4E-06 55.1 2.8 23 40-62 66-88 (290)
297 3ec2_A DNA replication protein 93.0 0.073 2.5E-06 48.9 4.3 23 39-61 39-61 (180)
298 3aez_A Pantothenate kinase; tr 93.0 0.036 1.2E-06 56.2 2.3 22 40-61 92-113 (312)
299 4a74_A DNA repair and recombin 93.0 0.052 1.8E-06 51.7 3.3 30 40-69 27-56 (231)
300 4f4c_A Multidrug resistance pr 93.0 0.27 9.2E-06 59.7 10.3 22 40-61 1107-1128(1321)
301 1knq_A Gluconate kinase; ALFA/ 93.0 0.04 1.4E-06 50.3 2.3 23 39-61 9-31 (175)
302 1odf_A YGR205W, hypothetical 3 92.9 0.092 3.2E-06 52.6 5.1 24 38-61 31-54 (290)
303 3lnc_A Guanylate kinase, GMP k 92.9 0.032 1.1E-06 53.7 1.7 22 40-61 29-51 (231)
304 1cke_A CK, MSSA, protein (cyti 92.9 0.045 1.5E-06 52.2 2.7 23 39-61 6-28 (227)
305 3kta_A Chromosome segregation 92.8 0.039 1.3E-06 50.7 2.1 23 39-61 27-49 (182)
306 3kb2_A SPBC2 prophage-derived 92.8 0.058 2E-06 48.8 3.2 23 39-61 2-24 (173)
307 2qor_A Guanylate kinase; phosp 92.8 0.051 1.7E-06 51.2 2.9 25 37-61 11-35 (204)
308 1rz3_A Hypothetical protein rb 92.6 0.086 2.9E-06 49.5 4.2 23 39-61 23-45 (201)
309 3uie_A Adenylyl-sulfate kinase 92.6 0.047 1.6E-06 51.2 2.4 23 39-61 26-48 (200)
310 4e22_A Cytidylate kinase; P-lo 92.5 0.048 1.6E-06 53.4 2.4 26 38-63 27-55 (252)
311 1xjc_A MOBB protein homolog; s 92.5 0.072 2.5E-06 48.7 3.4 25 37-61 3-27 (169)
312 1z47_A CYSA, putative ABC-tran 92.5 0.058 2E-06 55.6 3.1 23 40-62 43-65 (355)
313 3tui_C Methionine import ATP-b 92.5 0.058 2E-06 55.7 3.0 23 40-62 56-78 (366)
314 3fvq_A Fe(3+) IONS import ATP- 92.4 0.056 1.9E-06 55.8 2.8 23 40-62 32-54 (359)
315 1jjv_A Dephospho-COA kinase; P 92.4 0.064 2.2E-06 50.4 3.0 22 40-61 4-25 (206)
316 2if2_A Dephospho-COA kinase; a 92.4 0.051 1.7E-06 51.0 2.3 21 40-60 3-23 (204)
317 2yyz_A Sugar ABC transporter, 92.3 0.063 2.1E-06 55.5 3.1 23 40-62 31-53 (359)
318 2jeo_A Uridine-cytidine kinase 92.3 0.052 1.8E-06 52.8 2.4 22 40-61 27-48 (245)
319 1p9r_A General secretion pathw 92.3 0.05 1.7E-06 57.5 2.3 22 40-61 169-190 (418)
320 3end_A Light-independent proto 92.3 0.36 1.2E-05 48.4 8.6 67 139-219 156-225 (307)
321 2it1_A 362AA long hypothetical 92.3 0.064 2.2E-06 55.5 3.0 23 40-62 31-53 (362)
322 4fid_A G protein alpha subunit 92.2 0.13 4.5E-06 52.6 5.3 71 138-221 159-242 (340)
323 3rlf_A Maltose/maltodextrin im 92.2 0.065 2.2E-06 55.7 3.0 23 40-62 31-53 (381)
324 2qt1_A Nicotinamide riboside k 92.2 0.069 2.4E-06 50.3 3.0 22 40-61 23-44 (207)
325 2ewv_A Twitching motility prot 92.2 0.053 1.8E-06 56.4 2.3 22 40-61 138-159 (372)
326 1g29_1 MALK, maltose transport 92.1 0.068 2.3E-06 55.5 3.1 23 40-62 31-53 (372)
327 3t61_A Gluconokinase; PSI-biol 92.1 0.061 2.1E-06 50.4 2.4 24 38-61 18-41 (202)
328 1lw7_A Transcriptional regulat 92.0 0.05 1.7E-06 56.4 1.9 22 40-61 172-193 (365)
329 1v43_A Sugar-binding transport 92.0 0.072 2.5E-06 55.3 3.0 23 40-62 39-61 (372)
330 1f2t_A RAD50 ABC-ATPase; DNA d 92.0 0.073 2.5E-06 47.6 2.7 21 39-59 24-44 (149)
331 1ly1_A Polynucleotide kinase; 91.9 0.077 2.6E-06 48.3 2.9 21 40-60 4-24 (181)
332 2jaq_A Deoxyguanosine kinase; 91.9 0.086 3E-06 49.1 3.2 22 40-61 2-23 (205)
333 1puj_A YLQF, conserved hypothe 91.9 0.15 5E-06 50.9 5.1 53 166-222 13-65 (282)
334 1nij_A Hypothetical protein YJ 91.8 0.045 1.5E-06 55.7 1.2 26 37-62 3-28 (318)
335 1sq5_A Pantothenate kinase; P- 91.7 0.061 2.1E-06 54.4 2.1 22 40-61 82-103 (308)
336 2kjq_A DNAA-related protein; s 91.7 0.056 1.9E-06 48.3 1.6 24 38-61 36-59 (149)
337 2vp4_A Deoxynucleoside kinase; 91.5 0.078 2.7E-06 51.0 2.6 22 40-61 22-43 (230)
338 2ehv_A Hypothetical protein PH 91.5 0.072 2.5E-06 51.4 2.3 21 40-60 32-52 (251)
339 3d31_A Sulfate/molybdate ABC t 91.5 0.059 2E-06 55.4 1.8 23 40-62 28-50 (348)
340 3vaa_A Shikimate kinase, SK; s 91.4 0.086 2.9E-06 49.4 2.7 22 39-60 26-47 (199)
341 3gd7_A Fusion complex of cysti 91.4 0.085 2.9E-06 55.1 2.8 23 40-62 49-71 (390)
342 1qhx_A CPT, protein (chloramph 91.3 0.098 3.4E-06 47.7 2.9 22 40-61 5-26 (178)
343 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.075 2.6E-06 56.9 2.4 26 37-62 137-162 (460)
344 1y63_A LMAJ004144AAA protein; 91.3 0.11 3.8E-06 47.9 3.3 25 37-61 9-33 (184)
345 3trf_A Shikimate kinase, SK; a 91.2 0.11 3.9E-06 47.6 3.3 22 38-59 5-26 (185)
346 2iyv_A Shikimate kinase, SK; t 91.2 0.11 3.6E-06 47.8 3.0 22 39-60 3-24 (184)
347 1kht_A Adenylate kinase; phosp 91.1 0.1 3.5E-06 48.0 2.9 22 39-60 4-25 (192)
348 1nks_A Adenylate kinase; therm 91.1 0.097 3.3E-06 48.2 2.7 22 40-61 3-24 (194)
349 1via_A Shikimate kinase; struc 91.0 0.11 3.9E-06 47.3 3.0 23 39-61 5-27 (175)
350 1oxx_K GLCV, glucose, ABC tran 91.0 0.059 2E-06 55.6 1.1 23 40-62 33-55 (353)
351 2cdn_A Adenylate kinase; phosp 90.8 0.15 5.1E-06 47.6 3.7 24 37-60 18-42 (201)
352 3tqc_A Pantothenate kinase; bi 90.8 0.092 3.1E-06 53.3 2.3 22 40-61 94-115 (321)
353 3cm0_A Adenylate kinase; ATP-b 90.7 0.12 4.1E-06 47.5 2.9 20 40-59 6-25 (186)
354 1cip_A Protein (guanine nucleo 90.7 0.11 3.6E-06 53.7 2.7 70 139-221 192-274 (353)
355 2rhm_A Putative kinase; P-loop 90.6 0.12 4E-06 47.8 2.7 22 39-60 6-27 (193)
356 3ohm_A Guanine nucleotide-bind 90.6 0.14 4.7E-06 52.1 3.4 70 139-221 166-248 (327)
357 3b5x_A Lipid A export ATP-bind 90.6 0.14 4.6E-06 56.7 3.6 22 40-61 371-392 (582)
358 3iij_A Coilin-interacting nucl 90.6 0.14 4.9E-06 46.8 3.3 23 37-59 10-32 (180)
359 3qf7_A RAD50; ABC-ATPase, ATPa 90.6 0.11 3.9E-06 53.7 2.9 23 38-60 23-45 (365)
360 3fb4_A Adenylate kinase; psych 90.5 0.14 4.7E-06 48.4 3.1 21 40-60 2-22 (216)
361 1yqt_A RNAse L inhibitor; ATP- 90.4 0.17 5.8E-06 55.3 4.2 31 40-72 314-344 (538)
362 2c95_A Adenylate kinase 1; tra 90.4 0.15 5.1E-06 47.1 3.3 23 38-60 9-31 (196)
363 3h2y_A GTPase family protein; 90.3 0.17 5.8E-06 52.5 3.9 56 164-223 57-112 (368)
364 3ozx_A RNAse L inhibitor; ATP 90.3 0.16 5.6E-06 55.4 3.9 30 40-71 296-325 (538)
365 2plr_A DTMP kinase, probable t 90.2 0.14 4.7E-06 48.0 2.9 23 39-61 5-27 (213)
366 2pez_A Bifunctional 3'-phospho 90.2 0.12 4E-06 47.4 2.3 22 40-61 7-28 (179)
367 2v54_A DTMP kinase, thymidylat 90.1 0.16 5.5E-06 47.3 3.3 23 39-61 5-27 (204)
368 2x8a_A Nuclear valosin-contain 90.1 0.12 3.9E-06 51.4 2.3 22 40-61 46-67 (274)
369 1yqt_A RNAse L inhibitor; ATP- 90.1 0.14 4.9E-06 55.9 3.2 23 40-62 49-71 (538)
370 3dl0_A Adenylate kinase; phosp 90.1 0.16 5.3E-06 48.1 3.1 21 40-60 2-22 (216)
371 3kjh_A CO dehydrogenase/acetyl 90.1 1.1 3.7E-05 42.9 9.4 63 139-218 131-194 (254)
372 1e6c_A Shikimate kinase; phosp 90.0 0.16 5.4E-06 46.0 3.0 22 39-60 3-24 (173)
373 2z0h_A DTMP kinase, thymidylat 90.0 0.15 5.2E-06 47.1 2.9 22 40-61 2-23 (197)
374 4b4t_L 26S protease subunit RP 90.0 2.1 7.3E-05 45.1 12.0 22 40-61 217-238 (437)
375 3bk7_A ABC transporter ATP-bin 90.0 0.19 6.6E-06 55.6 4.2 31 40-72 384-414 (607)
376 1ixz_A ATP-dependent metallopr 89.9 0.12 4.3E-06 50.2 2.3 22 40-61 51-72 (254)
377 1in4_A RUVB, holliday junction 89.8 0.23 7.8E-06 50.7 4.4 24 38-61 51-74 (334)
378 2yvu_A Probable adenylyl-sulfa 89.7 0.13 4.6E-06 47.3 2.3 23 39-61 14-36 (186)
379 2bwj_A Adenylate kinase 5; pho 89.7 0.17 5.8E-06 46.9 3.0 22 39-60 13-34 (199)
380 4b4t_K 26S protease regulatory 89.6 1.4 4.7E-05 46.4 10.3 25 37-61 204-229 (428)
381 2pbr_A DTMP kinase, thymidylat 89.6 0.17 5.7E-06 46.7 2.9 21 40-60 2-22 (195)
382 3ozx_A RNAse L inhibitor; ATP 89.6 0.16 5.4E-06 55.5 3.0 23 40-62 27-49 (538)
383 1tev_A UMP-CMP kinase; ploop, 89.5 0.17 5.9E-06 46.6 2.9 21 40-60 5-25 (196)
384 2wwf_A Thymidilate kinase, put 89.5 0.16 5.4E-06 47.7 2.7 23 38-60 10-32 (212)
385 2w0m_A SSO2452; RECA, SSPF, un 89.5 0.14 4.8E-06 48.6 2.4 22 40-61 25-46 (235)
386 2pt5_A Shikimate kinase, SK; a 89.5 0.19 6.5E-06 45.2 3.1 21 40-60 2-22 (168)
387 4a82_A Cystic fibrosis transme 89.5 0.15 5.1E-06 56.4 2.8 22 40-61 369-390 (578)
388 3euj_A Chromosome partition pr 89.3 0.14 4.8E-06 54.9 2.3 23 39-61 30-52 (483)
389 1nn5_A Similar to deoxythymidy 89.3 0.17 5.8E-06 47.6 2.7 22 39-60 10-31 (215)
390 3b60_A Lipid A export ATP-bind 89.3 0.17 5.7E-06 56.0 3.0 22 40-61 371-392 (582)
391 1gtv_A TMK, thymidylate kinase 89.2 0.084 2.9E-06 49.7 0.5 22 40-61 2-23 (214)
392 2ga8_A Hypothetical 39.9 kDa p 89.2 0.33 1.1E-05 49.8 4.9 25 37-61 23-47 (359)
393 3nwj_A ATSK2; P loop, shikimat 89.2 0.16 5.4E-06 49.7 2.4 23 38-60 48-70 (250)
394 1cr0_A DNA primase/helicase; R 89.2 0.14 4.8E-06 51.2 2.1 22 40-61 37-58 (296)
395 3j16_B RLI1P; ribosome recycli 89.2 0.17 5.9E-06 56.0 3.0 23 40-62 105-127 (608)
396 3qks_A DNA double-strand break 89.1 0.18 6E-06 47.5 2.7 22 38-59 23-44 (203)
397 3qf4_A ABC transporter, ATP-bi 89.1 0.17 5.8E-06 56.0 2.9 22 40-61 371-392 (587)
398 1azs_C GS-alpha; complex (lyas 89.1 0.17 5.8E-06 53.0 2.8 70 139-221 216-298 (402)
399 1zd8_A GTP:AMP phosphotransfer 89.1 0.2 6.8E-06 47.9 3.0 23 38-60 7-29 (227)
400 3bk7_A ABC transporter ATP-bin 89.1 0.19 6.5E-06 55.7 3.2 23 40-62 119-141 (607)
401 1jbk_A CLPB protein; beta barr 89.0 0.43 1.5E-05 43.2 5.3 24 38-61 43-66 (195)
402 3ake_A Cytidylate kinase; CMP 89.0 0.18 6.2E-06 47.1 2.7 22 39-60 3-24 (208)
403 3a4m_A L-seryl-tRNA(SEC) kinas 88.9 0.19 6.4E-06 49.3 2.8 23 38-60 4-26 (260)
404 1gvn_B Zeta; postsegregational 88.8 0.42 1.4E-05 47.6 5.3 21 40-60 35-55 (287)
405 3qf4_B Uncharacterized ABC tra 88.7 0.16 5.5E-06 56.3 2.4 22 40-61 383-404 (598)
406 1qf9_A UMP/CMP kinase, protein 88.7 0.2 6.9E-06 46.0 2.7 22 39-60 7-28 (194)
407 1vht_A Dephospho-COA kinase; s 88.7 0.21 7.1E-06 47.3 2.8 22 39-60 5-26 (218)
408 1iy2_A ATP-dependent metallopr 88.6 0.17 5.9E-06 50.0 2.3 22 40-61 75-96 (278)
409 1e4v_A Adenylate kinase; trans 88.6 0.22 7.4E-06 47.1 2.9 21 40-60 2-22 (214)
410 2yl4_A ATP-binding cassette SU 88.6 0.16 5.5E-06 56.3 2.3 22 40-61 372-393 (595)
411 1t9h_A YLOQ, probable GTPase E 88.6 0.16 5.3E-06 51.3 2.0 52 172-223 82-133 (307)
412 1aky_A Adenylate kinase; ATP:A 88.6 0.24 8.3E-06 46.9 3.3 22 39-60 5-26 (220)
413 1uf9_A TT1252 protein; P-loop, 88.6 0.21 7.3E-06 46.3 2.8 24 38-61 8-31 (203)
414 1zak_A Adenylate kinase; ATP:A 88.6 0.21 7.2E-06 47.5 2.8 22 39-60 6-27 (222)
415 1ukz_A Uridylate kinase; trans 88.4 0.27 9.3E-06 45.8 3.4 23 38-60 15-37 (203)
416 3thx_A DNA mismatch repair pro 88.3 1.4 4.7E-05 51.2 9.9 19 40-58 664-682 (934)
417 1svm_A Large T antigen; AAA+ f 88.2 0.19 6.5E-06 52.2 2.4 22 40-61 171-192 (377)
418 2ze6_A Isopentenyl transferase 88.0 0.2 7E-06 48.9 2.3 22 40-61 3-24 (253)
419 1qhl_A Protein (cell division 87.9 0.044 1.5E-06 52.8 -2.5 23 40-62 29-51 (227)
420 3ec1_A YQEH GTPase; atnos1, at 87.9 0.21 7.1E-06 51.8 2.5 56 164-223 59-114 (369)
421 2vli_A Antibiotic resistance p 87.9 0.19 6.6E-06 45.8 2.0 22 39-60 6-27 (183)
422 2p5t_B PEZT; postsegregational 87.7 0.41 1.4E-05 46.6 4.4 23 39-61 33-55 (253)
423 1m7g_A Adenylylsulfate kinase; 87.7 0.22 7.6E-06 46.9 2.4 23 39-61 26-48 (211)
424 1zuh_A Shikimate kinase; alpha 87.6 0.28 9.6E-06 44.2 2.9 22 38-59 7-28 (168)
425 2cvh_A DNA repair and recombin 87.6 0.23 7.8E-06 46.8 2.4 21 40-60 22-42 (220)
426 2xb4_A Adenylate kinase; ATP-b 87.5 0.29 1E-05 46.6 3.1 21 40-60 2-22 (223)
427 2grj_A Dephospho-COA kinase; T 87.5 0.28 9.7E-06 45.7 2.9 22 39-60 13-34 (192)
428 1n0w_A DNA repair protein RAD5 87.1 0.25 8.4E-06 47.4 2.3 22 40-61 26-47 (243)
429 3qkt_A DNA double-strand break 87.1 0.27 9.1E-06 50.3 2.7 22 39-60 24-45 (339)
430 2obl_A ESCN; ATPase, hydrolase 87.1 0.24 8.2E-06 50.9 2.3 23 40-62 73-95 (347)
431 3j16_B RLI1P; ribosome recycli 87.1 0.28 9.7E-06 54.3 3.1 22 41-62 381-402 (608)
432 2dhr_A FTSH; AAA+ protein, hex 86.9 0.49 1.7E-05 51.0 4.7 22 40-61 66-87 (499)
433 1sxj_E Activator 1 40 kDa subu 86.8 0.27 9.2E-06 50.2 2.5 25 37-61 35-59 (354)
434 3be4_A Adenylate kinase; malar 86.8 0.34 1.2E-05 45.9 3.0 22 39-60 6-27 (217)
435 1fnn_A CDC6P, cell division co 86.7 0.6 2.1E-05 48.0 5.2 25 37-61 43-67 (389)
436 3tlx_A Adenylate kinase 2; str 86.7 0.35 1.2E-05 46.8 3.1 22 39-60 30-51 (243)
437 2p65_A Hypothetical protein PF 86.5 0.36 1.2E-05 43.7 3.0 24 38-61 43-66 (187)
438 2dpy_A FLII, flagellum-specifi 86.4 0.27 9.2E-06 52.2 2.3 23 40-62 159-181 (438)
439 3n70_A Transport activator; si 86.4 0.86 3E-05 40.0 5.4 22 40-61 26-47 (145)
440 1ak2_A Adenylate kinase isoenz 86.4 0.43 1.5E-05 45.7 3.6 22 39-60 17-38 (233)
441 4eaq_A DTMP kinase, thymidylat 86.2 0.36 1.2E-05 46.4 2.9 23 39-61 27-49 (229)
442 2chg_A Replication factor C sm 86.2 0.58 2E-05 43.5 4.3 24 38-61 38-61 (226)
443 2o5v_A DNA replication and rep 86.1 0.29 1E-05 50.4 2.3 23 39-61 27-49 (359)
444 3exa_A TRNA delta(2)-isopenten 85.8 0.46 1.6E-05 47.8 3.5 23 39-61 4-26 (322)
445 1q3t_A Cytidylate kinase; nucl 85.7 0.4 1.4E-05 46.0 3.0 24 37-60 15-38 (236)
446 3r20_A Cytidylate kinase; stru 85.7 0.44 1.5E-05 45.9 3.3 22 39-60 10-31 (233)
447 4b4t_M 26S protease regulatory 85.7 2.1 7.2E-05 45.1 8.7 22 40-61 217-238 (434)
448 2ius_A DNA translocase FTSK; n 85.6 0.37 1.3E-05 52.0 2.9 24 37-60 166-189 (512)
449 1w1w_A Structural maintenance 85.6 0.34 1.2E-05 51.2 2.7 24 39-62 27-50 (430)
450 4aby_A DNA repair protein RECN 85.6 0.12 4.2E-06 54.3 -0.9 23 39-61 61-83 (415)
451 4b4t_J 26S protease regulatory 85.6 3.4 0.00012 43.0 10.0 22 40-61 184-205 (405)
452 3g5u_A MCG1178, multidrug resi 85.5 0.37 1.3E-05 58.3 3.2 22 40-61 418-439 (1284)
453 3auy_A DNA double-strand break 85.5 0.36 1.2E-05 50.0 2.7 22 38-59 25-46 (371)
454 3a8t_A Adenylate isopentenyltr 85.4 0.6 2.1E-05 47.5 4.2 23 39-61 41-63 (339)
455 1uj2_A Uridine-cytidine kinase 85.3 0.41 1.4E-05 46.5 2.9 22 39-60 23-44 (252)
456 3eph_A TRNA isopentenyltransfe 85.3 1.1 3.6E-05 46.8 6.1 22 39-60 3-24 (409)
457 1lv7_A FTSH; alpha/beta domain 85.3 0.35 1.2E-05 47.0 2.3 22 40-61 47-68 (257)
458 1e69_A Chromosome segregation 85.1 0.35 1.2E-05 49.0 2.3 24 38-61 24-47 (322)
459 1nlf_A Regulatory protein REPA 85.0 0.34 1.2E-05 47.9 2.1 21 40-60 32-52 (279)
460 2f6r_A COA synthase, bifunctio 84.9 0.4 1.4E-05 47.6 2.6 20 40-59 77-96 (281)
461 1sxj_C Activator 1 40 kDa subu 84.9 0.39 1.3E-05 48.9 2.6 25 37-61 45-69 (340)
462 2iw3_A Elongation factor 3A; a 84.8 0.28 9.5E-06 57.1 1.6 23 40-62 701-723 (986)
463 3bos_A Putative DNA replicatio 84.7 0.51 1.8E-05 44.7 3.2 24 38-61 52-75 (242)
464 3sr0_A Adenylate kinase; phosp 84.6 0.52 1.8E-05 44.5 3.1 22 40-61 2-23 (206)
465 1ltq_A Polynucleotide kinase; 84.6 0.45 1.6E-05 47.4 2.9 21 40-60 4-24 (301)
466 3co5_A Putative two-component 84.6 0.92 3.1E-05 39.7 4.6 22 40-61 29-50 (143)
467 1tue_A Replication protein E1; 84.5 0.43 1.5E-05 44.9 2.4 21 40-60 60-80 (212)
468 3pfi_A Holliday junction ATP-d 84.5 0.96 3.3E-05 45.7 5.3 25 37-61 54-78 (338)
469 2xtz_A Guanine nucleotide-bind 84.4 0.38 1.3E-05 49.5 2.2 70 139-221 182-264 (354)
470 4f4c_A Multidrug resistance pr 84.3 0.42 1.4E-05 58.0 2.9 22 40-61 446-467 (1321)
471 1a5t_A Delta prime, HOLB; zinc 84.3 7 0.00024 39.4 11.8 25 37-61 22-47 (334)
472 1wb9_A DNA mismatch repair pro 83.7 2.2 7.5E-05 48.7 8.3 23 40-62 609-631 (800)
473 3umf_A Adenylate kinase; rossm 83.7 0.65 2.2E-05 44.2 3.4 23 39-61 30-52 (217)
474 2w58_A DNAI, primosome compone 83.6 0.64 2.2E-05 43.2 3.3 23 39-61 55-77 (202)
475 3foz_A TRNA delta(2)-isopenten 83.5 0.52 1.8E-05 47.3 2.7 23 39-61 11-33 (316)
476 3l82_B F-box only protein 4; T 83.4 1.6 5.4E-05 41.3 5.8 94 164-258 113-216 (227)
477 3thx_B DNA mismatch repair pro 83.3 1.5 5.1E-05 50.8 6.8 22 40-61 675-696 (918)
478 4b4t_I 26S protease regulatory 83.2 3 0.0001 43.7 8.5 25 37-61 214-239 (437)
479 3cr8_A Sulfate adenylyltranfer 82.9 0.31 1.1E-05 53.3 0.9 22 40-61 371-392 (552)
480 3k9g_A PF-32 protein; ssgcid, 82.7 6.2 0.00021 38.1 10.3 89 139-248 144-233 (267)
481 1p5z_B DCK, deoxycytidine kina 82.6 0.56 1.9E-05 45.8 2.5 25 37-61 23-47 (263)
482 4b4t_H 26S protease regulatory 82.4 4.7 0.00016 42.7 9.6 22 40-61 245-266 (467)
483 2iw3_A Elongation factor 3A; a 82.3 0.54 1.8E-05 54.7 2.6 22 40-61 463-484 (986)
484 3h4m_A Proteasome-activating n 81.8 1.1 3.7E-05 44.1 4.3 23 39-61 52-74 (285)
485 2qmh_A HPR kinase/phosphorylas 81.8 0.75 2.6E-05 43.0 2.9 23 39-61 35-57 (205)
486 2ce7_A Cell division protein F 81.7 0.86 2.9E-05 48.8 3.7 22 40-61 51-72 (476)
487 3ux8_A Excinuclease ABC, A sub 81.6 0.61 2.1E-05 52.4 2.7 20 40-59 350-369 (670)
488 4ag6_A VIRB4 ATPase, type IV s 81.4 0.61 2.1E-05 48.5 2.4 26 37-62 34-59 (392)
489 2iut_A DNA translocase FTSK; n 81.1 0.74 2.5E-05 50.2 3.0 24 37-60 213-236 (574)
490 3zvl_A Bifunctional polynucleo 81.1 0.74 2.5E-05 48.5 2.9 23 39-61 259-281 (416)
491 2qz4_A Paraplegin; AAA+, SPG7, 80.9 2 6.8E-05 41.4 5.9 23 39-61 40-62 (262)
492 1njg_A DNA polymerase III subu 80.9 0.88 3E-05 42.8 3.2 22 40-61 47-68 (250)
493 1a7j_A Phosphoribulokinase; tr 80.9 0.48 1.7E-05 47.2 1.4 23 38-60 5-27 (290)
494 2ocp_A DGK, deoxyguanosine kin 80.8 0.75 2.6E-05 44.2 2.7 22 40-61 4-25 (241)
495 1pzn_A RAD51, DNA repair and r 80.7 0.62 2.1E-05 47.8 2.1 23 40-62 133-155 (349)
496 3d3q_A TRNA delta(2)-isopenten 80.7 0.77 2.6E-05 46.8 2.8 23 39-61 8-30 (340)
497 2qby_A CDC6 homolog 1, cell di 80.3 1.1 3.7E-05 45.8 3.9 24 38-61 45-68 (386)
498 2dr3_A UPF0273 protein PH0284; 79.9 0.84 2.9E-05 43.6 2.7 21 40-60 25-45 (247)
499 3g5u_A MCG1178, multidrug resi 79.8 0.85 2.9E-05 55.2 3.2 22 40-61 1061-1082(1284)
500 3cf0_A Transitional endoplasmi 79.8 1.2 4.1E-05 44.4 3.9 22 40-61 51-72 (301)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.5e-95 Score=820.31 Aligned_cols=600 Identities=38% Similarity=0.632 Sum_probs=523.7
Q ss_pred cchhhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEe
Q 007054 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (620)
Q Consensus 3 ~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~ 82 (620)
+|++|++++|+||+.+..+|.... +++|+|+|||.+|+|||||+|+|+|.++||++.++|||+|+++++.+
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~---------i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~ 95 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGG---------GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCcccc---------CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec
Confidence 589999999999999999986543 58999999999999999999999999999999999999999999998
Q ss_pred cCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccH
Q 007054 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (620)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~ 162 (620)
.+ .+|+.+.+..+..+.+++++..++...++.+.|.+++|+.+++.+++++|+.++++||||||+...+..+||+++
T Consensus 96 ~~---~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di 172 (772)
T 3zvr_A 96 ST---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 172 (772)
T ss_dssp CS---SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH
T ss_pred CC---cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHH
Confidence 75 468889999999999999999999999999999999999999999999999999999999999998888899988
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCee
Q 007054 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (620)
Q Consensus 163 ~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~ 242 (620)
...+.+++..|+.....+||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.+...++++||+
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 252 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCC
Confidence 89999999999987767778888999888888888899999999999999999999998877667777766677788999
Q ss_pred EEeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007054 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (620)
Q Consensus 243 ~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~eL~ 322 (620)
+|+++|+.+......+.++...|..||..+++|..+.++.|+..|.+.|.+.|..|++++||.++.+|+.++..++.+++
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele 332 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVD 332 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHH
Confidence 99999998776667788888888999999999988889999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCC--------CCCchhHHHHhhhHHHHhccCCccccCChhhHHHHH
Q 007054 323 HLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVV 394 (620)
Q Consensus 323 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~--------~~~~~i~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i 394 (620)
++|++++.++.++..+|++++++|++.|.++++|.+ .||+||+++|++.|+..+.++++++.+++++|+++|
T Consensus 333 ~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i 412 (772)
T 3zvr_A 333 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAI 412 (772)
T ss_dssp HHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHH
Confidence 999888877767777899999999999999999998 588999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCchhHHHHHHHhHHhhhhchHHHHHHHHHHHHHHHHHHHhchhccccChhhHHHHHHHHHHHHHHHHHH
Q 007054 395 SEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRD 474 (620)
Q Consensus 395 ~~~~G~~p~~f~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~ 474 (620)
+|++|++|++|+|+.+|+.||++||++|++||++||+.|+++|.+++++|. .+|.|||+|+++|.+++.+.|++++.
T Consensus 413 ~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~ 489 (772)
T 3zvr_A 413 KNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREG 489 (772)
T ss_dssp HHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999884 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccH---HHhhhc--hHH---Hhh---hCCC----------------CC----------------
Q 007054 475 EGRKTVIRLVDMEASYLTV---EFFRKL--PQE---VEK---AGNP----------------GN---------------- 511 (620)
Q Consensus 475 ~a~~~i~~li~~E~~yi~~---d~~~~~--~~~---~~~---~~~~----------------~~---------------- 511 (620)
+|+++|..||+||++|||| ||.+.. .+. ..+ .++. ..
T Consensus 490 ~t~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (772)
T 3zvr_A 490 RTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAEN 569 (772)
T ss_dssp HHHHHHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSE
T ss_pred HHHHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccc
Confidence 9999999999999999999 343311 000 000 0000 00
Q ss_pred -C----------------------------------------CCC-------------------------------CCCc
Q 007054 512 -S----------------------------------------GNT-------------------------------ASQA 519 (620)
Q Consensus 512 -~----------------------------------------~~~-------------------------------~~~~ 519 (620)
+ ... .|..
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 649 (772)
T 3zvr_A 570 LSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER 649 (772)
T ss_dssp EEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC-
T ss_pred cccccchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCcc
Confidence 0 000 0000
Q ss_pred cc------C------------CCch---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007054 520 VD------R------------YSDG---HFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKE 578 (620)
Q Consensus 520 ~~------~------------~~~~---~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l~~~L~~~L~~~~ 578 (620)
.. + ++++ +++.|+.+|+|||.||+|++.|+|||+|||+|||.+++.++.+|+..||..+
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~ 729 (772)
T 3zvr_A 650 VGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCG 729 (772)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTC
T ss_pred ccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 0 1111 4788999999999999999999999999999999999999999999999987
Q ss_pred hhhHhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007054 579 AKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWA 619 (620)
Q Consensus 579 ~~~~~~ll~E~~~i~~kR~~l~~~l~~L~~A~~~l~~~~~~ 619 (620)
. +.+||+|+|++++||++|.+++++|++|.++|++|++|
T Consensus 730 ~--~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~ 768 (772)
T 3zvr_A 730 D--QNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTT 768 (772)
T ss_dssp C--TTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred C--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5 89999999999999999999999999999999999875
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.3e-85 Score=736.24 Aligned_cols=565 Identities=26% Similarity=0.395 Sum_probs=479.6
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeee
Q 007054 14 IQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEF 93 (620)
Q Consensus 14 lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~ 93 (620)
+.+.+..+|.... .++|+|+|||++|||||||+++|+|. .+|+++|.||++|+.+.+.+.+........+
T Consensus 30 ~id~l~~~gv~~~---------l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i 99 (608)
T 3szr_A 30 LIDSLRALGVEQD---------LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKV 99 (608)
T ss_dssp HHHHHHHHSCCSS---------CCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEE
T ss_pred HHHHHHhCCCCCc---------ccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEE
Confidence 3445556664332 58999999999999999999999998 5699999999999999887765432222222
Q ss_pred ecC-CCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH
Q 007054 94 LHL-PKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS 172 (620)
Q Consensus 94 ~~~-~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~ 172 (620)
... ....+.++..+.+.+........+.+.+++.+.+.+.+.++..|+++|+|+||+...++.+++.+....+.+++.+
T Consensus 100 ~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 100 SYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp SCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred eeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 211 2345677888888888877777788889999999999999999999999999999988889999999999999999
Q ss_pred hhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCCccccCCCeeEEeeCChh
Q 007054 173 YVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQA 250 (620)
Q Consensus 173 yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~lg~~~v~~~s~~ 250 (620)
|+.++.++++++++++.|+++++++++++.+++.|.|||+|+||+|+++.++ .+.+++.|+..++++||++|+|++++
T Consensus 180 ~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~ 259 (608)
T 3szr_A 180 YIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQ 259 (608)
T ss_dssp HTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTT
T ss_pred HHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchh
Confidence 9999999999999999999999999999999999999999999999998876 36788889999999999999999999
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCCCCcccc--ccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007054 251 DINRNIDMIVARRKEREYFATSPDYGHLAG--KMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPI 328 (620)
Q Consensus 251 ~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~--~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~eL~~lg~~~ 328 (620)
+++...+..+++..|..||.+++||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.+++.||++||+++
T Consensus 260 ~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~ 339 (608)
T 3szr_A 260 EIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDI 339 (608)
T ss_dssp CTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred hcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999997754 899999999999999999999999999999999999999999999998
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCC---chhHHHHhhhHHHHhccCCc----cccCChhhHHHHHHhhcCCC
Q 007054 329 AVDAGAQLYTILELCRAFDRIFKEHLDGGRPGG---DRIYGVFDNQLPAALRKLPF----DRHLSLQNVKKVVSEADGYQ 401 (620)
Q Consensus 329 ~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~---~~i~~~f~~~f~~~~~~~~~----~~~~~~~~i~~~i~~~~G~~ 401 (620)
++++.++..+|++++++|++.+.++++|.+..+ .+++..++..|..+...+.. ......++|++++++++|.+
T Consensus 340 ~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 419 (608)
T 3szr_A 340 PEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAE 419 (608)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCC
Confidence 888888888899999999999999999997533 57777777777766544321 11234678999999999999
Q ss_pred CCCCCchhHHHHHHHhHHhhhhchHHHHHHHHHHHHHHHHHHHhchhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007054 402 PHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVI 481 (620)
Q Consensus 402 p~~f~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~ 481 (620)
++.|+|+.+|+.||++||++|++|+.+|++.|++.+..++..++. .+|.|||+|++++.+++.+++++++++|+++|+
T Consensus 420 ~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~ 497 (608)
T 3szr_A 420 LPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIR 497 (608)
T ss_dssp SSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764 589999999999999999999999999999999
Q ss_pred HHHHHhcccccHHH-hhhchHHHhhhCCCCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007054 482 RLVDMEASYLTVEF-FRKLPQEVEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVR 560 (620)
Q Consensus 482 ~li~~E~~yi~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~ 560 (620)
++|+||+.|||+|. |.. . ...+.+|+.+|+|||+||+||++|+|||+||||||+
T Consensus 498 ~li~mE~~~~~~d~~~~~---------~----------------~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~ 552 (608)
T 3szr_A 498 LHFQMEQIVYGAFQSSSA---------T----------------DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQ 552 (608)
T ss_dssp HHHHHHHHCCCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHhhccccCCccccC---------C----------------CccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998863 320 0 001247999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007054 561 EAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVS 617 (620)
Q Consensus 561 ~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~l~~L~~A~~~l~~~~ 617 (620)
.+++.||.+|++.||+.+. +++||+|||++++||++|++++++|++|+++|.+|.
T Consensus 553 ~~~~~lq~~l~~~l~~~~~--~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 553 TYGQQLQKAMLQLLQDKDT--YSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHHHHHHHHHHTTTTCHHH--HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcchh--HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998765 999999999999999999999999999999999984
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=5.6e-51 Score=431.56 Aligned_cols=331 Identities=73% Similarity=1.175 Sum_probs=296.0
Q ss_pred chhhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEec
Q 007054 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (620)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~ 83 (620)
|+.|++++|+||++++.+|..+. +..++.....+|+|+|||++|||||||+|+|+|.+++|++.++||++|+++++.+.
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~ 79 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGD-SSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKI 79 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCS-SCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHHhhCcccc-ccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecC
Confidence 78999999999999999997653 34577777899999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHH
Q 007054 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (620)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~ 163 (620)
+..+..++.+.+.++..+.+|..+...+..++....|.+.+|+.+++.+++.+|..++++||||||+.+....+|+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 80 DDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIV 159 (360)
T ss_dssp SSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHH
T ss_pred CCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeE
Q 007054 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (620)
Q Consensus 164 ~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~ 243 (620)
..+..++..|+.++|+||+++++++.+..+++++.+++.+++.+.|+|+|+||+|+++++....+++.+....+++||++
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVG 239 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEE
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEE
Confidence 99999999999999999999999988888899999999999999999999999999988877888888888889999999
Q ss_pred EeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 007054 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDH 323 (620)
Q Consensus 244 v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~eL~~ 323 (620)
|+++++.+++...+...+...|..||.++++|..+..++|+.+|+.+|+++|.+||+++||.++.+|+..+.+++++|++
T Consensus 240 v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~ 319 (360)
T 3t34_A 240 VVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSR 319 (360)
T ss_dssp ECCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC---
T ss_pred EEECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhH
Q 007054 324 LGRPIAVDAGAQ 335 (620)
Q Consensus 324 lg~~~~~~~~~~ 335 (620)
||+++++++.++
T Consensus 320 lg~~~~~~~~~~ 331 (360)
T 3t34_A 320 LGKPIAHGTDSR 331 (360)
T ss_dssp ------------
T ss_pred cCCCCCCCHHHH
Confidence 999998766554
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=2.3e-46 Score=394.89 Aligned_cols=339 Identities=51% Similarity=0.811 Sum_probs=308.6
Q ss_pred cchhhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEe
Q 007054 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (620)
Q Consensus 3 ~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~ 82 (620)
+|++|++++|+||+.+..+|.... .++|+|+|||.+|+|||||+|+|+|.+++|+++++||++|+++++.+
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~---------~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~ 75 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGG---------CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEc
Confidence 589999999999999999886532 48999999999999999999999999999999999999999999988
Q ss_pred cCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccH
Q 007054 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (620)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~ 162 (620)
.+ .+|+.+.+.++..++++..+...+++++.++.|.+.+++...+.+++++|+..+++||||||+.+.+..+|++++
T Consensus 76 ~~---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~ 152 (353)
T 2x2e_A 76 AT---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 152 (353)
T ss_dssp CS---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTH
T ss_pred CC---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhH
Confidence 74 478899998999999999999999999999988889999999999999999999999999999998888889988
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCee
Q 007054 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (620)
Q Consensus 163 ~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~ 242 (620)
.+.+.+++..|+..++++||+|++++.++.+++++.+++.+++.+.|+|+|+||+|+++++.++.+++.+...++++||+
T Consensus 153 ~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 232 (353)
T 2x2e_A 153 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232 (353)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCce
Confidence 89999999999999999999999999999889888899999999999999999999998776667777777778889999
Q ss_pred EEeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007054 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (620)
Q Consensus 243 ~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~eL~ 322 (620)
.|.++|+.+.....+..+....|.+||..++.|+....++|+..|.+.|.+.|..|+++++|.+..+|+..+..++.+|+
T Consensus 233 ~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~ 312 (353)
T 2x2e_A 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312 (353)
T ss_dssp ECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877777788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhhHH--HHHHHHHHHHHHHHHHh
Q 007054 323 HLGRPIAVDAGAQL--YTILELCRAFDRIFKEH 353 (620)
Q Consensus 323 ~lg~~~~~~~~~~~--~~l~~~~~~f~~~~~~~ 353 (620)
++|.+++.++.++. .++++++++|++.|...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 313 EYKNFRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp HHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HccCCCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99987776654443 78999999999988654
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=4.9e-39 Score=333.79 Aligned_cols=310 Identities=51% Similarity=0.812 Sum_probs=246.8
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecC
Q 007054 5 ESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTE 84 (620)
Q Consensus 5 ~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~ 84 (620)
+.|++++|+||++++.+|.. . ..+|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~---------~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~ 70 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-P---------LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLP 70 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-T---------TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECC
T ss_pred CchHHHHHHHHHHHHHcCCC-C---------CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCC
Confidence 46899999999999888755 2 4899999999999999999999999999999999999999999998864
Q ss_pred C-----CCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCC
Q 007054 85 D-----GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (620)
Q Consensus 85 ~-----~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~ 159 (620)
. ....|+.+.+.++..+.++.++.+.+...+.++.|.+.+|+.+++.+++.+|...+++||||||+.+.+..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~ 150 (315)
T 1jwy_B 71 IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQP 150 (315)
T ss_dssp CCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC--------
T ss_pred CcccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCc
Confidence 3 34688889898999999999999999999888888888999999999999999999999999999876666677
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCC
Q 007054 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (620)
Q Consensus 160 ~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l 239 (620)
+.....+..++..|+..+|++|+++++++.++..++.+.+++.+++.+.++++|+||+|+.+.+....+.+.+....++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~ 230 (315)
T 1jwy_B 151 TDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTL 230 (315)
T ss_dssp -CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTT
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCC
Confidence 77888899999999999999999888877777666667789999988999999999999997766566767655556678
Q ss_pred CeeEEeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007054 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (620)
Q Consensus 240 g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l~~~~~ 319 (620)
+|+++++.|+.+++......+....+..||..+++|..+..+.|+..|...+.+.+..++++++|.+..+++..+.++++
T Consensus 231 ~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~ 310 (315)
T 1jwy_B 231 GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQG 310 (315)
T ss_dssp CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999987778888888888899998888888888999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 007054 320 EMDHL 324 (620)
Q Consensus 320 eL~~l 324 (620)
+|++|
T Consensus 311 ~l~~~ 315 (315)
T 1jwy_B 311 ELSTY 315 (315)
T ss_dssp -----
T ss_pred HHHhC
Confidence 99875
No 6
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=322.40 Aligned_cols=258 Identities=12% Similarity=0.166 Sum_probs=191.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcCCC---CCCchhHHHHhhhHHHHhccCCccccCC----hhhHHHHHHhhcCCCCC
Q 007054 331 DAGAQLYTILELCRAFDRIFKEHLDGGR---PGGDRIYGVFDNQLPAALRKLPFDRHLS----LQNVKKVVSEADGYQPH 403 (620)
Q Consensus 331 ~~~~~~~~l~~~~~~f~~~~~~~~~g~~---~~~~~i~~~f~~~f~~~~~~~~~~~~~~----~~~i~~~i~~~~G~~p~ 403 (620)
++.+++.+|.+.++.|.+.+.+++.|.. .|+.|++..++..|.+|...++-..... .++|....++++|.++|
T Consensus 2 ~~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELP 81 (271)
T 3ljb_A 2 DENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELP 81 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccC
Confidence 3456788999999999999999999986 3567999999999998887554211111 35677777899999999
Q ss_pred CCCchhHHHHHHHhHHhhhhchHHHHHHHHHHHHHHHHHHHhchhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007054 404 LIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRL 483 (620)
Q Consensus 404 ~f~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~l 483 (620)
.|+|+.+|+.||++||++|++||++|++.|++++.+++..+.. .+|.|||+|++.+..++.+++.+|..+|+++|+++
T Consensus 82 gFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~ 159 (271)
T 3ljb_A 82 GFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLH 159 (271)
T ss_dssp -CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988775 59999999999999999999999999999999999
Q ss_pred HHHhcccccHH-HhhhchHHHhh-hCCCC--CCCCCCCCcccCCCc-hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007054 484 VDMEASYLTVE-FFRKLPQEVEK-AGNPG--NSGNTASQAVDRYSD-GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQ 558 (620)
Q Consensus 484 i~~E~~yi~~d-~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~-~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~l 558 (620)
|+||+.+||+| .|....+.... ..++. ......+........ +.+.+|+.|+.|||+||++|++|+|||+|+|+|
T Consensus 160 ~~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~l 239 (271)
T 3ljb_A 160 FQMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFM 239 (271)
T ss_dssp HHHHTSCC----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 99999888886 34433222211 00010 000000001111222 457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhhhCCCHHH
Q 007054 559 VREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAM 592 (620)
Q Consensus 559 v~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i 592 (620)
|+.+++.||++|++.||+++. +.+||+|+|++
T Consensus 240 l~~~~~~lQ~~ml~~l~~~~~--~~~LL~E~~d~ 271 (271)
T 3ljb_A 240 LQTYGQQLQKAMLQLLQDKDT--YSWLLKERSDT 271 (271)
T ss_dssp THHHHHHHHHHHHHTTSCGGG--HHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHhchhh--HHHHhcCCCCC
Confidence 999999999999999999876 99999999985
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=1e-36 Score=313.84 Aligned_cols=299 Identities=56% Similarity=0.901 Sum_probs=262.4
Q ss_pred chhhhHHHHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEec
Q 007054 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (620)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~ 83 (620)
|++|+++++++++.+..++.... ..+|+|+|||.+|+|||||+|+|+|.+++|++.++||++|+++++.+.
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~---------~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~ 71 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNS 71 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTT---------CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCC---------CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecC
Confidence 78999999999999988875432 478999999999999999999999999999999999999999999886
Q ss_pred CCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHH
Q 007054 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (620)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~ 163 (620)
+ .+|+.+.+..+..+++++.+...+...+..+.|.+.+++...+.+++.+|...+++||||||+......+++++..
T Consensus 72 ~---~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~ 148 (299)
T 2aka_B 72 T---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE 148 (299)
T ss_dssp S---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHH
T ss_pred C---cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHH
Confidence 5 4678888888888999999999988888888888889999999999999988999999999999876666777788
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeE
Q 007054 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (620)
Q Consensus 164 ~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~ 243 (620)
..+..++..|++.++++||+|.+++.++..++.+.+++.+++.+.|+++|+||+|+.+++....+.+.+....++.||+.
T Consensus 149 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2aka_B 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 228 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEE
Confidence 88999999999999999888888888888888778999999999999999999999987665566676655566678999
Q ss_pred EeeCChhhhhccCCHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007054 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSI 314 (620)
Q Consensus 244 v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lP~l~~~i~~~l 314 (620)
+.+.|+...............|.+||...+.|.....++|+..|.+.|.+.+..++++++|.+.++|+.++
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 99999876655566777777899999888889999999999999999999999999999999999998753
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.82 E-value=3.3e-19 Score=202.60 Aligned_cols=172 Identities=19% Similarity=0.268 Sum_probs=111.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHH---HH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEI---QD 113 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i---~~ 113 (620)
..++|+|+|.+|+|||||+|+|+|.+++|++..+||++|+.+.+...... ...+.........++..+...+ .+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~---t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKV---TIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEE---EEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeE---EEEEcCCCcccccChhhhhhhhcCCHH
Confidence 55799999999999999999999999999999999999999986432111 1111111111122222222111 01
Q ss_pred HHhhhcCCCCCccCccEEEEEecCCC---CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch
Q 007054 114 ETDRVTGKTKQISPIPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD 190 (620)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~---~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d 190 (620)
....+.+.+.........++++.|.. .+++||||||+..... ....+..|++.+|++|+++ +++.+
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~Vv-da~~~ 213 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILFVM-RASQP 213 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEEEE-ETTST
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEEEE-eCCCc
Confidence 11122233333445566677777754 5899999999876321 2567889999999887655 45555
Q ss_pred hcchHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+...+...+...+...+.++++|+||+|+...
T Consensus 214 ~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 214 CTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred cchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 53343323344566678899999999999754
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.59 E-value=1.9e-15 Score=155.57 Aligned_cols=165 Identities=18% Similarity=0.283 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
....|+++|.+|+|||||+|+|+|..+...+.. .+|+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~---------------------------------------- 48 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMR---------------------------------------- 48 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC----------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeE----------------------------------------
Confidence 445899999999999999999999986322211 122211
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
+...........++||||||+.+... .....+.+...+..|+..+|+++++++..+ .....
T Consensus 49 --------------~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~-~~~~~- 109 (308)
T 3iev_A 49 --------------VLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATE-GWRPR- 109 (308)
T ss_dssp --------------EEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTT-BSCHH-
T ss_pred --------------EEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCC-CCCch-
Confidence 11111222246789999999986431 133566777888999999999987765543 33222
Q ss_pred HHHH-HHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCcccc--CCCeeEEeeCChhhhhccCCHHH
Q 007054 196 AMKL-AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL--QHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 196 ~l~l-~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l--~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
...+ ...+...+.++++|+||+|+........+.+......+ ...++.+++..+.++++.+....
T Consensus 110 ~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~ 177 (308)
T 3iev_A 110 DEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTIL 177 (308)
T ss_dssp HHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 3333 56666567899999999999843333222222111112 13466666666666555444433
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.58 E-value=2.4e-15 Score=154.04 Aligned_cols=124 Identities=24% Similarity=0.317 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..+.|++||.+|+|||||+|+|+|..+.+.+.. .+|+..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~---------------------------------------- 45 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR---------------------------------------- 45 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC----------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEE----------------------------------------
Confidence 345899999999999999999999987332211 122211
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
+. .+.......+.|+||||+.+.. ..+.+.+...+..|++.+|+++++++..+ .+...
T Consensus 46 --------------i~-~i~~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~VvD~~~-~~~~~- 103 (301)
T 1wf3_A 46 --------------LR-GILTEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWVVDLRH-PPTPE- 103 (301)
T ss_dssp --------------EE-EEEEETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEEEETTS-CCCHH-
T ss_pred --------------EE-EEEEeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEEEECCC-CCChH-
Confidence 11 1122234678999999987632 12556677888999999999987765543 33222
Q ss_pred HHHHHHHhCCC--CCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPT--GERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~--~~rti~VltK~D~~~~ 222 (620)
...+...+... +.++|+|+||+|+...
T Consensus 104 ~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 104 DELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred HHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 22333444433 6899999999999864
No 11
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.52 E-value=9e-15 Score=146.37 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=95.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.|+|+++|.+|+|||||+|+|+|..+.......+|.-.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~------------------------------------------ 38 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEK------------------------------------------ 38 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEE------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEE------------------------------------------
Confidence 38999999999999999999999864111111111100
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCCchhcchH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~~~iil~V~~a~~d~~~~~ 195 (620)
..-.+.. +...+.||||||+.+....++.. ...+.+...|+ .++|++|++++..+ ...
T Consensus 39 ------------~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~---~~~e~i~~~~~~~~~~d~vi~VvDas~----~~~ 98 (256)
T 3iby_A 39 ------------KTGEFLL-GEHLIEITDLPGVYSLVANAEGI---SQDEQIAAQSVIDLEYDCIINVIDACH----LER 98 (256)
T ss_dssp ------------EEEEEEE-TTEEEEEEECCCCSSCC---------CHHHHHHHHHHHHSCCSEEEEEEEGGG----HHH
T ss_pred ------------EEEEEEE-CCeEEEEEeCCCcccccccccCC---CHHHHHHHHHHhhCCCCEEEEEeeCCC----chh
Confidence 0001111 22478999999998754321111 22345677788 88999988776554 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
.+.+..++...+.|+++|+||+|+.+... +... + ...++.+++.+++..+.++++.+.
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~-l---~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEK-L---ESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHH-H---HHHHCSCEEECBGGGTBSHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHH-H---HHHcCCCEEEEECCCCCCHHHHHH
Confidence 56677788888999999999999875432 1112 1 123456677777766666554444
No 12
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.47 E-value=8.1e-14 Score=135.92 Aligned_cols=130 Identities=24% Similarity=0.378 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|+|+|+|.+|+|||||+|+|+|..++. .++..|
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~----~~~~~~----------------------------------------- 62 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLA----FASKTP----------------------------------------- 62 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSS----CTTCCC-----------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcce----eecCCC-----------------------------------------
Confidence 57899999999999999999999986321 111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC---CCeEEEEeccCCchhcc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK---PNSVILAISPANQDIAT 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~---~~~iil~V~~a~~d~~~ 193 (620)
| .+.......+.......++||||||+..... +....+.+..++..|+.. +|.+|+++ ++...+ .
T Consensus 63 ---~----~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~-d~~~~~-~ 130 (223)
T 4dhe_A 63 ---G----RTQHINYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMM-DARRPL-T 130 (223)
T ss_dssp ---C----SCCCEEEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCC-C
T ss_pred ---C----cccceEEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEE-eCCCCC-C
Confidence 0 0111111222334457899999999876432 233456677888888877 55576655 444333 3
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.....+.+.+...+.++++|+||+|+.+..
T Consensus 131 ~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 131 ELDRRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccCChh
Confidence 334445666665678999999999998643
No 13
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.46 E-value=1.8e-13 Score=138.37 Aligned_cols=137 Identities=17% Similarity=0.259 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 4899999999999999999999987654432111100
Q ss_pred cCCCCCccCccEEEEEecCC-CCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEE
Q 007054 119 TGKTKQISPIPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILA 183 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~-~~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~-------------~~~iil~ 183 (620)
. .++..+.....+...+ ...++||||||+...... .....+...+.+....|+.. +|+++++
T Consensus 46 -~--~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~ 122 (274)
T 3t5d_A 46 -K--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF 122 (274)
T ss_dssp ------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEE
T ss_pred -C--CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEE
Confidence 0 0011111112222111 137899999999654221 11222333344444566654 6788888
Q ss_pred eccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 184 ISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 184 V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+.++...+ ......+++.+.. +.++|+|+||+|++...
T Consensus 123 i~~~~~~~-~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 123 IAPSGHGL-KPLDIEFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp ECSCCSSC-CHHHHHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred ecCCCCCC-CHHHHHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 88877555 3444567777877 89999999999998543
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.44 E-value=2.3e-14 Score=146.86 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcc-cccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
.-+.|++||.+|+|||||+|+|+|..+.+.+..+ +|+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~---------------------------------------- 46 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR---------------------------------------- 46 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC----------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee----------------------------------------
Confidence 3468999999999999999999998763222111 12111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCC-ccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~-~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
+. .+...+...++++||||+. .... .....+...+..+++.+|+++++++... +...
T Consensus 47 --------------~~-gi~~~~~~~i~~iDTpG~~~~~~~-----~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~~ 104 (301)
T 1ega_A 47 --------------IV-GIHTEGAYQAIYVDTPGLHMEEKR-----AINRLMNKAASSSIGDVELVIFVVEGTR--WTPD 104 (301)
T ss_dssp --------------EE-EEEEETTEEEEEESSSSCCHHHHH-----HHHHHHTCCTTSCCCCEEEEEEEEETTC--CCHH
T ss_pred --------------EE-EEEEECCeeEEEEECcCCCccchh-----hHHHHHHHHHHHHHhcCCEEEEEEeCCC--CCHH
Confidence 00 1122234578999999986 2110 0112233335667888998877665433 4333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
+ ..+++.+...+.|.|+|+||+|+..
T Consensus 105 ~-~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 105 D-EMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp H-HHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred H-HHHHHHHHhcCCCEEEEEECcccCc
Confidence 3 3456666666799999999999986
No 15
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.44 E-value=1.3e-13 Score=138.24 Aligned_cols=128 Identities=17% Similarity=0.168 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcc--cccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
..++|+|+|.+|+|||||+|+|+|...++.+... +|+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~------------------------------------- 63 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSK------------------------------------- 63 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEE-------------------------------------
Confidence 4569999999999999999999998765544332 2322200
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
.........+.||||||+.+.... .+.....+...+..+++.+|++|++++.....-...
T Consensus 64 ------------------~~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (260)
T 2xtp_A 64 ------------------SQGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQ 123 (260)
T ss_dssp ------------------EEEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHH
T ss_pred ------------------EEEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH
Confidence 011122357899999999864322 222334455666778899999988776553111112
Q ss_pred HHHHHHHHhCCC--CCceEEEec-cCCCCC
Q 007054 195 DAMKLAREVDPT--GERTFGVLT-KLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~~~~--~~rti~Vlt-K~D~~~ 221 (620)
..+..+..+... +.+.|+|+| |+|+..
T Consensus 124 ~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 124 QAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 233344443221 467888888 999984
No 16
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.42 E-value=2.3e-13 Score=150.41 Aligned_cols=168 Identities=15% Similarity=0.207 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcC--cccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFL--PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~l--P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (620)
...|.|+|+|.+|+|||||+|+|+|.++. +++..++|...+.+..... . ...... ....+. ..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~--~-----~i~~g~-~l~~~~-------~~ 127 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET--E-----GTVPGN-ALVVDP-------EK 127 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSS--S-----EEECCC----------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCc--c-----cccCCc-eeeecC-------cc
Confidence 36799999999999999999999999864 5677777766554442111 0 000000 000000 00
Q ss_pred HHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHH--HHHHHHHhhcCCCeEEEEeccCCchh
Q 007054 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED--IESMVRSYVEKPNSVILAISPANQDI 191 (620)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~--~~~~~~~yi~~~~~iil~V~~a~~d~ 191 (620)
....+...+..+....++..+.++....++||||||+...... .+... +..++..|+..+|++|+++++.+.++
T Consensus 128 ~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~ 203 (550)
T 2qpt_A 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI 203 (550)
T ss_dssp ----------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC
T ss_pred cHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC
Confidence 0011111123344555555544333357999999999762211 01111 45677888999999988776554344
Q ss_pred cchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 192 ~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
......++..+...+.++++|+||+|++++.
T Consensus 204 -~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 204 -SDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -CHHHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred -CHHHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 3344556777777788999999999998643
No 17
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.42 E-value=1.7e-13 Score=137.31 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=91.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.++|+++|++|+|||||+|+|+|..+.......+|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~------------------------------------------- 41 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVE------------------------------------------- 41 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCE-------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEE-------------------------------------------
Confidence 4689999999999999999999987521111111111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCCchhcchH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~~~iil~V~~a~~d~~~~~ 195 (620)
.....+.. ....+.|+||||..+.... .. -+.+...|+ ..+|++|++++..+. ..
T Consensus 42 -----------~~~~~~~~-~~~~~~l~DtpG~~~~~~~----~~---~e~v~~~~~~~~~~d~ii~V~D~t~~----~~ 98 (258)
T 3a1s_A 42 -----------KKEGVFTY-KGYTINLIDLPGTYSLGYS----SI---DEKIARDYLLKGDADLVILVADSVNP----EQ 98 (258)
T ss_dssp -----------EEEEEEEE-TTEEEEEEECCCCSSCCSS----SH---HHHHHHHHHHHSCCSEEEEEEETTSC----HH
T ss_pred -----------EEEEEEEE-CCeEEEEEECCCcCccCCC----CH---HHHHHHHHHhhcCCCEEEEEeCCCch----hh
Confidence 00111111 2357899999998764322 11 134556676 579998887765542 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCCccccCCCeeEEeeCChhhhhccCCH
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~ 258 (620)
.+.+..++...+.|+++|+||+|+.+... +...+ ...++.+++.+++..+.++++.+..
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYEL----QKHLGIPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHH----HHHHCSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHH----HHHcCCCEEEEEeeCCcCHHHHHHH
Confidence 44566666667899999999999864322 12222 1223456666666666665554443
No 18
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=134.50 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc--ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
..++|+|+|.+|+|||||+|+|+|..+++.+.. .+|..+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 457999999999999999999999987444332 2333321111
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
+ ......++||||||+...... .++....+...+..+.+.+|++|+++.....+....
T Consensus 73 -------------------~-~~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 130 (239)
T 3lxx_A 73 -------------------S-SWKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEH 130 (239)
T ss_dssp -------------------E-EETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHH
T ss_pred -------------------E-EeCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHH
Confidence 1 112347899999999875432 223445666667777788999988765432222122
Q ss_pred HHHHHHHH-hC-CCCCceEEEeccCCCCCCC
Q 007054 195 DAMKLARE-VD-PTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 195 ~~l~l~~~-~~-~~~~rti~VltK~D~~~~~ 223 (620)
.++..... +. ....++++|+||+|+.+..
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 23332221 11 1235899999999998653
No 19
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.41 E-value=3.3e-13 Score=128.52 Aligned_cols=126 Identities=25% Similarity=0.398 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|+|..+.+.... .|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSS----KP----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCC----CC-----------------------------------------
Confidence 578999999999999999999999875321110 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC---CeEEEEeccCCchhcc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDIAT 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~---~~iil~V~~a~~d~~~ 193 (620)
| .+.......+ ...+.++||||+..... +.+..+....+...|+... |+++++++ ++... +
T Consensus 57 ---~----~t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d-~~~~~-~ 120 (195)
T 1svi_A 57 ---G----KTQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIVD-LRHAP-S 120 (195)
T ss_dssp ----------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCC-C
T ss_pred ---C----ceeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEEE-CCCCC-C
Confidence 0 0000111111 23799999999765322 2333566777888888776 77766654 43333 2
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.....+.+.+...+.++++|+||+|+.+..
T Consensus 121 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 121 NDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 233344455544678999999999998754
No 20
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.41 E-value=2.9e-13 Score=146.96 Aligned_cols=157 Identities=18% Similarity=0.282 Sum_probs=92.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
++|++||.+|+|||||+|+|+|.++. +++..|
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a-----~vs~~~------------------------------------------- 275 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRA-----IVTDIP------------------------------------------- 275 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC-----CCCCSS-------------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCC-----ccCCCC-------------------------------------------
Confidence 68999999999999999999998651 222222
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCC-ccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~-~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
|.+..+.... +.+ +...++|+||||+. ...... + ..--..+..|++.+|++|++++..+. . +....
T Consensus 276 -gTT~d~~~~~--i~~---~g~~~~l~DTaG~~~~~~~~v--e---~~gi~~~~~~~~~aD~vl~VvD~s~~-~-s~~~~ 342 (482)
T 1xzp_A 276 -GTTRDVISEE--IVI---RGILFRIVDTAGVRSETNDLV--E---RLGIERTLQEIEKADIVLFVLDASSP-L-DEEDR 342 (482)
T ss_dssp -CCSSCSCCEE--EEE---TTEEEEEEESSCCCSSCCTTC--C---CCCHHHHHHHHHHCSEEEEEEETTSC-C-CHHHH
T ss_pred -CeeeeeEEEE--Eec---CCeEEEEEECCCccccchhhH--H---HHHHHHHHHHhhcccEEEEEecCCCC-C-CHHHH
Confidence 1111111111 112 23468999999987 432110 0 01123456788999999887765432 2 22233
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHH
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~ 261 (620)
.+...+ .+.++|+|+||+|+.+.. ...++.. .......++.+++.++.++++.+..+..
T Consensus 343 ~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 343 KILERI--KNKRYLVVINKVDVVEKI-NEEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp HHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred HHHHHh--cCCCEEEEEECccccccc-CHHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444545 268999999999997542 2212111 0111246788888877777766665544
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.41 E-value=6.8e-13 Score=130.19 Aligned_cols=134 Identities=15% Similarity=0.215 Sum_probs=78.0
Q ss_pred cccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHH
Q 007054 31 FSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKE 110 (620)
Q Consensus 31 ~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (620)
+|......++|+|+|.+|+|||||+|+|+|..+.+.....+|+.+
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~----------------------------------- 66 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL----------------------------------- 66 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-----------------------------------
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee-----------------------------------
Confidence 455555678999999999999999999999875221111112111
Q ss_pred HHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch
Q 007054 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD 190 (620)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d 190 (620)
.+.........+.|+||||....+... .. .........|...+|++|++++..+..
T Consensus 67 --------------------~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~--~~~~~~~~~~~~~~d~~i~v~d~~~~~ 122 (228)
T 2qu8_A 67 --------------------YVGHFDHKLNKYQIIDTPGLLDRAFEN--RN--TIEMTTITALAHINGVILFIIDISEQC 122 (228)
T ss_dssp --------------------EEEEEEETTEEEEEEECTTTTTSCGGG--CC--HHHHHHHHHHHTSSEEEEEEEETTCTT
T ss_pred --------------------eeeeeecCCCeEEEEECCCCcCcccch--hh--hHHHHHHHHhhccccEEEEEEeccccc
Confidence 011111123568999999986532210 00 111122345667788887766544321
Q ss_pred -hcchHHHHHHHHhCCC--CCceEEEeccCCCCCCC
Q 007054 191 -IATSDAMKLAREVDPT--GERTFGVLTKLDLMDKG 223 (620)
Q Consensus 191 -~~~~~~l~l~~~~~~~--~~rti~VltK~D~~~~~ 223 (620)
+.......+...+... +.++++|+||+|+.+..
T Consensus 123 s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 123 GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp SSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred CcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 2223344555555443 68999999999998643
No 22
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.40 E-value=2.1e-13 Score=137.48 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=90.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.++|+++|++|+|||||+|+|+|..+.......+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 46899999999999999999999864221111111111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~ 195 (620)
....+.. ...+.++||||..+..... .-+.+...|+. .+|++|++++..+. ..
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~~~~-------~~e~v~~~~~~~~~~d~vi~V~D~t~~----e~ 95 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMSPYS-------PEAKVARDYLLSQRADSILNVVDATNL----ER 95 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSSCSS-------HHHHHHHHHHHTTCCSEEEEEEEGGGH----HH
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccCCCC-------hHHHHHHHHHhcCCCCEEEEEecCCch----Hh
Confidence 1111222 4689999999987643221 12445667775 59988777655442 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
.+.+..++...+.++++|+||+|+..... +...+ ...++.+++.+++..+.++++.+.
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKL----SYHLGVPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHH----HHHHTSCEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHH----HHHcCCCEEEEEccCCCCHHHHHH
Confidence 34455555446899999999999864321 22221 122345677777776666655443
No 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.40 E-value=1.3e-13 Score=139.50 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=90.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
-++|+++|.+|+|||||+|+|+|..+ +++.- .+|.-+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~----------------------------------------- 40 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVER----------------------------------------- 40 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEE-----------------------------------------
Confidence 36899999999999999999999874 22211 111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~~~iil~V~~a~~d~~~~ 194 (620)
..-.+.. ....+.||||||..+.......... .+.+...|+ ..+|++|++++..+. .
T Consensus 41 -------------~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d~ii~VvD~~~~----~ 99 (274)
T 3i8s_A 41 -------------KEGQFST-TDHQVTLVDLPGTYSLTTISSQTSL---DEQIACHYILSGDADLLINVVDASNL----E 99 (274)
T ss_dssp -------------EEEEEEC-SSCEEEEEECCCCSCSCC----CCH---HHHHHHHHHHHTCCSEEEEEEEGGGH----H
T ss_pred -------------EEEEEEe-CCCceEEEECcCCCccccccccCCH---HHHHHHHHHhhcCCCEEEEEecCCCh----H
Confidence 1111222 2357899999999875422111112 233455665 789999887765542 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
..+.+..++...+.|+++|+||+|+.+... +...+ ...++..++.+++..+.++++.+
T Consensus 100 ~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 100 RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL----SARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH----HHHHTSCEEECCCGGGHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH----HHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444445445799999999999875432 11121 12344567777777666665443
No 24
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.40 E-value=1.1e-12 Score=120.77 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chHHH-HHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM-KLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~~l-~l~~~~~~~~~rti~VltK 216 (620)
..+.|+||||... ...+...|++.+|.++++++..+..- . ....+ .+.+.....+.++++|+||
T Consensus 51 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 51 SVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 3588999999543 14456678889999988776544221 0 11122 2334445567899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
+|+.+................+..|+.+++..+.++++.+...
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 118 VDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp GGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred CcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9987543211111111112234567777777777766544433
No 25
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.40 E-value=8.3e-13 Score=131.39 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcc--cccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (620)
.-.+|++||.+|+|||||+|+|+|..++..+... +|+.+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------- 64 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------------------------- 64 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-----------------------------------
Confidence 3458999999999999999999999875544332 443331111
Q ss_pred HhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
...+...++||||||+.+..... .+.....+......+.+.+|++|+++..........
T Consensus 65 --------------------~~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (247)
T 3lxw_A 65 --------------------RRWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ 123 (247)
T ss_dssp --------------------EEETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHH
T ss_pred --------------------EEECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHH
Confidence 11124578999999997643210 011222233333334589999988766543211122
Q ss_pred HHHHHHHHh-CC--CCCceEEEeccCCCCC
Q 007054 195 DAMKLAREV-DP--TGERTFGVLTKLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~-~~--~~~rti~VltK~D~~~ 221 (620)
..++.+..+ .+ .+.++|+|.||.|+.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 334444443 22 1578899999999965
No 26
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.39 E-value=1.4e-12 Score=123.83 Aligned_cols=124 Identities=21% Similarity=0.187 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcc-cccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..|+|+|+|.+|+|||||+|+|+|..+.+..... +|+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~----------------------------------------- 60 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRS----------------------------------------- 60 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCC-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccC-----------------------------------------
Confidence 5689999999999999999999998742111111 1100
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC---CeEEEEeccCCchhc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDIA 192 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~---~~iil~V~~a~~d~~ 192 (620)
... ......+.++||||+..... +.........+...|++.. ++++++++ +....
T Consensus 61 -------------~~~----~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d-~~~~~- 118 (195)
T 3pqc_A 61 -------------INF----YLVNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVD-GRIPP- 118 (195)
T ss_dssp -------------EEE----EEETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCC-
T ss_pred -------------eEE----EEECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEec-CCCCC-
Confidence 000 00124688999999765321 2223455677777887765 66665554 43333
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
......+.+.+...+.++++|+||+|+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 119 QDSDLMMVEWMKSLNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred CHHHHHHHHHHHHcCCCEEEEEEChhcCChH
Confidence 2223344455555578999999999998643
No 27
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.39 E-value=2.6e-13 Score=146.64 Aligned_cols=160 Identities=16% Similarity=0.290 Sum_probs=93.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
+|.|++||.+|+|||||+|+|+|... .++...|
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~------------------------------------------ 33 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEE------------------------------------------ 33 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCC------------------------------------------
Confidence 48999999999999999999999864 1222222
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
| ++.+.+.-.+.. +...+.||||||+..... +.....+...+..|++++|++|++++ +...+... ..
T Consensus 34 --g----~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~D-~~~~~~~~-d~ 100 (439)
T 1mky_A 34 --G----VTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVVD-GKRGITKE-DE 100 (439)
T ss_dssp ----------CCSEEEEEE-TTEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEEE-TTTCCCHH-HH
T ss_pred --C----CccceeeEEEEE-CCeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEEE-CCCCCCHH-HH
Confidence 0 111111111111 234689999999875321 12346678888999999999977664 44444222 22
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCC-CCcH-HHHHhCCccccCC-CeeEEeeCChhhhhccCCHHHHH
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDK-GTNA-LDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVAR 262 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~-~~~~-~~~l~~~~~~l~l-g~~~v~~~s~~~~~~~~~~~~~~ 262 (620)
.++..+...+.++++|+||+|+.+. .... .+ ...+++ .++.+++..+.+++++++.....
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~-----~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 163 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLREFEREVKPE-----LYSLGFGEPIPVSAEHNINLDTMLETIIKK 163 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHH-----HGGGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHH-----HHhcCCCCEEEEeccCCCCHHHHHHHHHHh
Confidence 3444444457899999999998642 1111 12 123444 35667777777766655554433
No 28
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.39 E-value=1.5e-13 Score=149.04 Aligned_cols=158 Identities=17% Similarity=0.254 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-.+|+|+|.+|+|||||+|+|+|.++ ..++..|
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~------------------------------------------ 265 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMP------------------------------------------ 265 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC----------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCC------------------------------------------
Confidence 34799999999999999999999864 2233222
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc--hH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~--~~ 195 (620)
|.+..+... .+.+ +...++||||||+.+.... +....-..+..|+..+|.++++++..+..... ..
T Consensus 266 --gtT~d~~~~--~i~~---~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~ 333 (476)
T 3gee_A 266 --GTTRDYIEE--CFIH---DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTE 333 (476)
T ss_dssp ---------CE--EEEE---TTEEEEEEC-------------------------CCCSSCSEEEEEEETTTCSSGGGHHH
T ss_pred --CceEEEEEE--EEEE---CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHH
Confidence 100111111 1111 2356999999998652110 11111234567899999998877654432110 14
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
...+...+. +.++|+|+||+|+.+......+.+... . ...++.+++..+.++++.+...
T Consensus 334 ~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~i 392 (476)
T 3gee_A 334 IRELKAAHP--AAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQHM 392 (476)
T ss_dssp HHHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHHH
Confidence 455666665 689999999999986543211111111 0 1356666666666665544433
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=7.3e-13 Score=124.16 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+.....++......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~-------------------------------------- 50 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN-------------------------------------- 50 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEE--------------------------------------
Confidence 456999999999999999999999876332222111111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
..+.+ ......+.++||||... ...+...|++.+|++|++++..+..- . ..
T Consensus 51 -------------~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 51 -------------KVLDV-DGVKVKLQMWDTAGQER-------------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 00011 11123688999999432 24566788999999988776544221 1 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
.++..+....+.+.++++|+||+|+.+..
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 34445555555678999999999998643
No 30
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.39 E-value=5.4e-13 Score=122.57 Aligned_cols=149 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccC-cccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.|+|+|+|.+|+|||||+|+|+|..+.+.+. ..+|..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 4799999999999999999999886421111 1111110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
....+.. ....+.|+||||..... +...........+++.+|++|++++..+. +...+
T Consensus 40 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~- 97 (161)
T 2dyk_A 40 -------------KEGVVET-DRGRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVLFAVDGRAE-LTQAD- 97 (161)
T ss_dssp -------------EEEEEEE-TTEEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEEEEEESSSC-CCHHH-
T ss_pred -------------eEEEEEe-CCceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEEEEEECCCc-ccHhH-
Confidence 1111111 12368999999986532 12345567778899999999887765442 21211
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCC-CeeEEeeCChhhhhc
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINR 254 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l-g~~~v~~~s~~~~~~ 254 (620)
..+.+.+...+.++++|+||+|+.+...+..++. .++. .|+.+++.++.++++
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 98 YEVAEYLRRKGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLEE 151 (161)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHHH
T ss_pred HHHHHHHHhcCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChHH
Confidence 1222233224688999999999986532222211 2233 456666655554443
No 31
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.38 E-value=2.3e-13 Score=147.03 Aligned_cols=154 Identities=22% Similarity=0.251 Sum_probs=81.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+++|.+|+|||||+|+|+|.++. +++..| +.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a-----~v~~~~---------gt-------------------------------- 258 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRA-----IVTDLP---------GT-------------------------------- 258 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBS-----CCSCCT---------TC--------------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcc-----cccCCC---------Ce--------------------------------
Confidence 47999999999999999999997652 223222 00
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
+..+.... +.+ +...++|+||||+.+.... +....-..+..++..+|.++++++..+ .. ......
T Consensus 259 ---T~d~~~~~--i~~---~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~-~~-~~~~~~ 323 (462)
T 3geh_A 259 ---TRDVVESQ--LVV---GGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTIDAAT-GW-TTGDQE 323 (462)
T ss_dssp ---CHHHHHHE--EEE---TTEEEEECC-------------------------CCCCSCSEEEEEEETTT-CS-CHHHHH
T ss_pred ---eEEEEEEE--EEE---CCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEeccCC-CC-CHHHHH
Confidence 00000001 111 2346899999998652110 111112335668899999987765543 33 223344
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 199 l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
+.+.+.. .++|+|+||+|+.+..... .+ ........++.+++.++.++++.+...
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~~~~--~~--~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQLIT--SL--EYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGGGST--TC--CCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred HHHhccC--CcEEEEEECCCCCcchhhH--HH--HHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 5555543 6999999999998643211 11 111223567788888777776655544
No 32
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.37 E-value=2.6e-12 Score=134.78 Aligned_cols=127 Identities=24% Similarity=0.371 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|.|++||.+|||||||+|+|+|..+...+...+|+-|+.-
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~-------------------------------------- 219 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY-------------------------------------- 219 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--------------------------------------
Confidence 578899999999999999999999875222333334333111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--hcc-
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT- 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~~~- 193 (620)
.+.+ ++ ..+.++||||+... .|.+..+.+... ..++..+|.++++++.++.+ ...
T Consensus 220 --------------~i~~--~g-~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 220 --------------AIPI--NN-RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLIET 277 (364)
T ss_dssp --------------EEEE--TT-EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHH
T ss_pred --------------EEEE--CC-EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHHH
Confidence 1112 12 46789999998652 244455555444 45788999988877654432 111
Q ss_pred -hHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 194 -~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
..+..+++.+...+.++|+|.||+|+.+.+
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 123455666665678999999999998654
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=124.00 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......|.-. .
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 54 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF---K------------------------------------- 54 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE---E-------------------------------------
Confidence 456999999999999999999998875222211111100 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+..- ...
T Consensus 55 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 55 ------------IRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHH
Confidence 000111 111246889999995431 3345678899999988776554221 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
.++..+......+.++++|+||+|+.+................+..|+.+.+..+.++++.+..+
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 34455555656678999999999998654321111111122334567777776666655544433
No 34
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.37 E-value=1.9e-12 Score=130.55 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcc-cccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.++|+++|++|+|||||+|+|+|..+ +.+... +|.-.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~----------------------------------------- 40 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK----------------------------------------- 40 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE-----------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe-----------------------------------------
Confidence 56999999999999999999999865 332111 11000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi--~~~~~iil~V~~a~~d~~~~ 194 (620)
....+.. ....+.|+||||..+.... .. -+.++..|+ .++|++|++++..+. .
T Consensus 41 -------------~~~~~~~-~~~~~~l~DtpG~~~~~~~----~~---~~~~~~~~~~~~~~d~vi~v~D~~~~----~ 95 (271)
T 3k53_A 41 -------------KEGIMEY-REKEFLVVDLPGIYSLTAH----SI---DELIARNFILDGNADVIVDIVDSTCL----M 95 (271)
T ss_dssp -------------EEEEEEE-TTEEEEEEECCCCSCCCSS----CH---HHHHHHHHHHTTCCSEEEEEEEGGGH----H
T ss_pred -------------eEEEEEE-CCceEEEEeCCCccccccC----CH---HHHHHHHhhhccCCcEEEEEecCCcc----h
Confidence 0001111 2345899999998864332 11 123556676 679998877665442 2
Q ss_pred HHHHHHHHhCCCC-CceEEEeccCCCCCCCC---cHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 195 DAMKLAREVDPTG-ERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 195 ~~l~l~~~~~~~~-~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
..+.+..++...+ .|+++|+||+|+.+... +...+ ...++.++++++...+.++.+.+....
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM----RKELGVPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH----HHHHSSCEEECBGGGTBTHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH----HHHcCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3444444444445 89999999999864321 22221 223456777777776666655554443
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.36 E-value=1.2e-12 Score=141.21 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=89.3
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.|.|++||.+|+|||||+|+|+|..+ ..+...|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~------------------------------------------ 35 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP------------------------------------------ 35 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCC------------------------------------------
Confidence 58999999999999999999999765 1222111
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
+++.+.....+ ......+.||||||+.... ++..+.+...+..|++++|++|++++ +..... ....
T Consensus 36 ------g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvD-~~~~~~-~~d~ 101 (436)
T 2hjg_A 36 ------GVTRDRIYSSA-EWLNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMVN-GREGVT-AADE 101 (436)
T ss_dssp -----------CEEEEC-TTCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEEE-TTTCSC-HHHH
T ss_pred ------CCccceEEEEE-EECCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEe-CCCCCC-HHHH
Confidence 11111111111 2234679999999986421 22567788889999999999877665 444442 2334
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCC-CeeEEeeCChhhhhccCCHH
Q 007054 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 198 ~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l-g~~~v~~~s~~~~~~~~~~~ 259 (620)
.+++.+...+.++++|+||+|+.+...... +...+++ .++.+++..+.++.++++..
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~~~~~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i 159 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAV 159 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC-----CCC-----SSGGGSSCCCEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECccCccchhhHH-----HHHHcCCCCeEEEeCcCCCChHHHHHHH
Confidence 567777777899999999999976432211 1223333 34556666666655544433
No 36
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.35 E-value=1.5e-12 Score=121.78 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+ +......+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 52 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEF---------------------------------------- 52 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEE----------------------------------------
Confidence 457999999999999999999999875 221111111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
....+.+ ......+.|+||||... ...+...|++.+|++|++++..+... ...
T Consensus 53 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 53 -----------GTRIIEV-SGQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRSTYNHLS 107 (179)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEE-CCeEEEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHH
Confidence 0001111 11124689999999432 24457788999999988776544311 011
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
.++..+......+.++++|+||+|+.+......+.+.......+..|+.+++..+.++++
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 233445555556789999999999975432111111111112234556555555554443
No 37
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.35 E-value=1.5e-12 Score=120.30 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=58.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|++|+|||||+|+|+|..+.+......+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD------------------------------------------ 39 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE------------------------------------------
Confidence 45899999999999999999998765222111111000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH--
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~-- 195 (620)
..+. .......+.++||||... ...+...|++.+|+++++++..+..- -..
T Consensus 40 ------------~~~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~ 92 (166)
T 3q72_A 40 ------------RSIV-VDGEEASLMVYDIWEQDG-------------GRWLPGHCMAMGDAYVIVYSVTDKGS-FEKAS 92 (166)
T ss_dssp ------------EEEE-ETTEEEEEEEEECC----------------------------CCEEEEEEETTCHHH-HHHHH
T ss_pred ------------EEEE-ECCEEEEEEEEECCCCcc-------------chhhhhhhhhhCCEEEEEEECCCHHH-HHHHH
Confidence 0000 111224678999999543 24456678899999988776554321 111
Q ss_pred -HHHHH-HHhCCCCCceEEEeccCCCCCCC
Q 007054 196 -AMKLA-REVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 196 -~l~l~-~~~~~~~~rti~VltK~D~~~~~ 223 (620)
++... +.....+.++++|+||+|+.+..
T Consensus 93 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 93 ELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp HHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred HHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 22222 22233578999999999998644
No 38
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.35 E-value=1.4e-12 Score=141.51 Aligned_cols=125 Identities=21% Similarity=0.312 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|.|++||.+|+|||||+|+|+|..+. .+...|
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-----~v~~~~----------------------------------------- 55 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-----IVEDTP----------------------------------------- 55 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC----------------------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-----ccCCCC-----------------------------------------
Confidence 5799999999999999999999997651 121111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+++.+.....+ ......+.||||||+... .+...+.+...+..|++.+|++|++++ +...+ +...
T Consensus 56 -------g~t~~~~~~~~-~~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~VvD-~~~~~-~~~d 120 (456)
T 4dcu_A 56 -------GVTRDRIYSSA-EWLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVN-GREGV-TAAD 120 (456)
T ss_dssp ------------CEEEEC-TTCSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEE-SSSCS-CHHH
T ss_pred -------CcceeEEEEEE-EECCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEEEe-CCCCC-ChHH
Confidence 11112222222 223468999999998742 223567888899999999999877665 44444 3344
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+++.+...+.++++|+||+|+.+.
T Consensus 121 ~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHHHHHHHHcCCCEEEEEECccchhh
Confidence 55777787789999999999998754
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.35 E-value=5.2e-12 Score=119.62 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=46.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch---HHHHHHHHhCC-CCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDP-TGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~---~~l~l~~~~~~-~~~rti~Vlt 215 (620)
..+.|+||||... ...+...|++.+|++|++++..+.+ ... .++..+..... .+.++++|+|
T Consensus 70 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLER-------------FRSLTTAFFRDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHHTTTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4689999999643 2556788999999998877654422 111 22332333322 5789999999
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|+|+.+.
T Consensus 136 K~Dl~~~ 142 (195)
T 3bc1_A 136 KSDLEDQ 142 (195)
T ss_dssp CTTCGGG
T ss_pred Ccccccc
Confidence 9999754
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.35 E-value=3.2e-12 Score=122.60 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+.... |. .+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~-~~~~~------------------------------------- 46 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TV-GIDFK------------------------------------- 46 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CC-SEEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--cc-ceeEE-------------------------------------
Confidence 457999999999999999999999876321111 10 00000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
...+.+ ......+.|+||||... ...+...|++.+|++|++++..+..- . ..
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 47 ------------VKTIYR-NDKRIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYDITNEESFNAVQ 100 (203)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCeEEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEECcCHHHHHHHH
Confidence 000111 11224689999999643 24567889999999988776544221 0 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 2333444444557899999999999764
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.35 E-value=2.2e-12 Score=121.66 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+... .
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 48 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF---G------------------------------------- 48 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE---E-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE---E-------------------------------------
Confidence 457999999999999999999998875222111111000 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
...+.+ ......+.|+||||... ...+...|++.+|++|++++..+..- . ..
T Consensus 49 ------------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 102 (186)
T 2bme_A 49 ------------SKIINV-GGKYVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRETYNALT 102 (186)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 000011 11123688999999532 25567889999999988776544221 0 11
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2333445555567899999999999753
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=123.23 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+ .. ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~--~~------------------------------------- 63 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-VE--FS------------------------------------- 63 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS-EE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc-ee--EE-------------------------------------
Confidence 456999999999999999999999875322111100 00 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+..- . ..
T Consensus 64 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~ 117 (193)
T 2oil_A 64 ------------TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVVE 117 (193)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000111 112346899999997542 2345678899999988765543211 0 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 2333344444457889999999999754
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=120.35 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|++|+|||||+|+|+|..+.+....+.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~-------------------------------------------- 38 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE-------------------------------------------- 38 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSS--------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcccc--------------------------------------------
Confidence 346999999999999999999999875221110000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~ 194 (620)
......+.+ ......+.++||||.... ....+...|++.+|++|++++..+.. +.. .
T Consensus 39 ---------~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (175)
T 2nzj_A 39 ---------DVYERTLTV-DGEDTTLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97 (175)
T ss_dssp ---------SEEEEEEEE-TTEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHH
T ss_pred ---------ceeEEEEEE-CCEEEEEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEEECCCHHHHHHHH
Confidence 000001111 111236789999996431 02344567888999998877654322 111 1
Q ss_pred HHHHHHHHh-CCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREV-DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~-~~~~~rti~VltK~D~~~~ 222 (620)
.++..+... ...+.++++|+||+|+.+.
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 122222222 2347899999999999764
No 44
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=122.78 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
....+|+|+|.+|+|||||+|+|++..+.+......+. ...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~---~~~------------------------------------ 64 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV---DFK------------------------------------ 64 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTE---EEE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce---eEE------------------------------------
Confidence 34568999999999999999999998752211111100 000
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-c
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-T 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~ 193 (620)
...+.+ ......+.|+||||... ...+...|++.+|++|++++..+.. +. .
T Consensus 65 -------------~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~ 117 (192)
T 2il1_A 65 -------------IKTVEL-RGKKIRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITKKETFDDL 117 (192)
T ss_dssp -------------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEE-CCeEEEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 001111 11124689999999532 2456778889999998877654422 11 1
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..++..++...+.+.++++|+||+|+.+.
T Consensus 118 ~~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 118 PKWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 23345566666668899999999999754
No 45
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.34 E-value=1.3e-12 Score=121.12 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|.+|+|||||+|+|+|..+.+......+.-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 40 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF------------------------------------------ 40 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE------------------------------------------
Confidence 35899999999999999999999875221111111000
Q ss_pred hcCCCCCccCccEEEEEecC-CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 118 VTGKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~-~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
....+... ....+.|+||||.... ..+...|++.+|++|++++..+..- . ..
T Consensus 41 ------------~~~~~~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (170)
T 1g16_A 41 ------------KIKTVDINGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIK 95 (170)
T ss_dssp ------------EEEEEESSSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEEECCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00001111 1236889999995432 2234568889999988776543221 1 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
.++..+......+.++++|+||+|+.+
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 344445555555789999999999944
No 46
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.34 E-value=6.7e-13 Score=124.33 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...++|+|+|.+|+|||||+|+|+|..+.+......|... .
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---~------------------------------------ 47 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF---K------------------------------------ 47 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE---E------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE---E------------------------------------
Confidence 3668999999999999999999999875221111111000 0
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
...+.+ ......+.++||||.... ..+...|++.+|++|++++..+. .....
T Consensus 48 -------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~ 99 (181)
T 3tw8_B 48 -------------IRTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSA-ESFVN 99 (181)
T ss_dssp -------------EEEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEETTCH-HHHHH
T ss_pred -------------EEEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEECCCH-HHHHH
Confidence 000111 111146889999995432 22345688999999887765442 11222
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ---~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
++.......+ +.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 100 VKRWLHEINQNCD-DVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHHHCT-TSEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHhCC-CCCEEEEEECCCCchh
Confidence 2222333232 5789999999998754
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.34 E-value=1.1e-12 Score=121.52 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+... .|..+. ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~-~~------------------------------------- 44 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--TTLGAS-FL------------------------------------- 44 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--CCCSCE-EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--CccceE-EE-------------------------------------
Confidence 34689999999999999999999886522111 111100 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
...+.+ ......+.++||||... ...+...|++.+|++|++++..+.+- ...
T Consensus 45 ------------~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 98 (170)
T 1z08_A 45 ------------TKKLNI-GGKRVNLAIWDTAGQER-------------FHALGPIYYRDSNGAILVYDITDEDSFQKVK 98 (170)
T ss_dssp ------------EEEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHh-------------hhhhHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 000111 11123688999999532 23445668899999988776544321 011
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
.++..++...+.+.++++|+||+|+.+......+.........+..|+.+++..+.++++.
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 2233334433446889999999999764321111111111122345666666555554443
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.34 E-value=4.2e-12 Score=119.47 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 57 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 57 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEE--------------------------------------
Confidence 446899999999999999999998875 32222222111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
.+.+ ......+.|+||||... ...+...|++.+|++|++++..+..- ...
T Consensus 58 --------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (187)
T 2a9k_A 58 --------------KVVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATA 109 (187)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 0001 11123688999999543 14566778899999988776543221 011
Q ss_pred HHHH-HHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMK-LAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~-l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++. +.......+.++++|+||+|+.+.
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2222 333344457899999999999764
No 49
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.34 E-value=3.9e-12 Score=120.22 Aligned_cols=123 Identities=20% Similarity=0.347 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccC-cccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
+++|+|+|.+|+|||||+|+|+|..+ +.+. ..+|..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~------------------------------------------ 37 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRK------------------------------------------ 37 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTS------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccce------------------------------------------
Confidence 46899999999999999999999875 3221 111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC-CC---eEEEEeccCCchhc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK-PN---SVILAISPANQDIA 192 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~-~~---~iil~V~~a~~d~~ 192 (620)
...+.+ ..+.++||||+..... .+....+....+...|++. ++ .++. |.++.....
T Consensus 38 ------------~~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~d~~s~~~ 97 (190)
T 2cxx_A 38 ------------IIEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVL-VVDGKAAPE 97 (190)
T ss_dssp ------------CEEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEE-EEETTHHHH
T ss_pred ------------eEEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEE-EEcchhhhh
Confidence 111121 1789999999765321 1222355667777777765 44 4433 344332110
Q ss_pred c-hH---------HHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 193 T-SD---------AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 193 ~-~~---------~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
. .. ...+.+.+...+.++++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 98 IIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 0 11 1223344444578999999999998653
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.33 E-value=2.6e-12 Score=118.49 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=72.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 43 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK--------------------------------------- 43 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEE---------------------------------------
Confidence 35899999999999999999998875 32222222111000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~ 195 (620)
.+.+ ......+.|+||||... ...+...|++.+|++|++++..+.+- . ...
T Consensus 44 -------------~~~~-~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 44 -------------KVVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 0001 11123688999999532 24567788999999988776543221 0 112
Q ss_pred HHH-HHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMK-LAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~-l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
++. +.......+.++++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 222 333344457899999999999754
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=2.1e-12 Score=124.76 Aligned_cols=158 Identities=17% Similarity=0.210 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+.+.....++.-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 57 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF----------------------------------------- 57 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-----------------------------------------
Confidence 567999999999999999999998875322111111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~ 194 (620)
. ...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +. ..
T Consensus 58 ---------~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 58 ---------K--IKTVDI-NGKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIK 112 (213)
T ss_dssp ---------E--EEEEEE-TTEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ---------E--EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 0 000111 111146899999995432 223567889999998877654422 11 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHH
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~ 261 (620)
.++..+....+.+.++++|+||+|+.++.....+ ........+..|+.+.+..+.++++.+..+..
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ-GEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHH-HHHHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcccccCHHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3444455555557899999999999433221111 11111123346677776666666555544433
No 52
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.33 E-value=2.2e-12 Score=120.58 Aligned_cols=154 Identities=15% Similarity=0.293 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...++|+|+|.+|+|||||+|+|++..+.+.....+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 3678999999999999999999999876332222111111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
... .+.+ +...+.|+||||...... +...|+..+|++|++++. +... ...
T Consensus 46 ----------~~~--~~~~---~~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~d~-~~~~-~~~ 95 (178)
T 2lkc_A 46 ----------GAY--QVTV---NDKKITFLDTPGHEAFTT-------------MRARGAQVTDIVILVVAA-DDGV-MPQ 95 (178)
T ss_dssp ----------CCC--EEEE---TTEEEEESCCCSSSSSSC-------------SCCSSCCCCCEEEEEEET-TCCC-CHH
T ss_pred ----------eEE--EEEe---CCceEEEEECCCCHHHHH-------------HHHHHHhhCCEEEEEEEC-CCCC-cHH
Confidence 000 1111 124578999999654221 123577889999887653 3222 345
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhCC-ccccC----CCeeEEeeCChhhhhccCCHH
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGR-SYRLQ----HPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~-~~~l~----lg~~~v~~~s~~~~~~~~~~~ 259 (620)
.+..+..+...+.++++|+||+|+.+... .....+... ..... ..|+.+++..+.++++.+..+
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 55666666666789999999999986431 222222211 11111 246666666666665554443
No 53
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.33 E-value=2.3e-12 Score=119.31 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=74.0
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|.+|+|||||+|+|+|..+.+.... |... ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~-~~~-------------------------------------- 44 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP--TIGA-SFM-------------------------------------- 44 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC--CCSE-EEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceeE-EEE--------------------------------------
Confidence 45899999999999999999999875221111 1000 000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cc-hH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-SD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~-~~ 195 (620)
...+.+ ......+.++||||.... ..+...|++.+|++|++++..+... .. ..
T Consensus 45 -----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 45 -----------TKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence 000111 111246889999997431 3455678899999988776544321 11 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
++..+........++++|+||+|+.+..
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred HHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 3444455555568899999999998643
No 54
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.33 E-value=1.8e-12 Score=121.29 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=47.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..+.++||||+..... ......-..+..|++.+|+++++++..+.. .....++.......+.+.++++|+||+|
T Consensus 52 ~~~~l~Dt~G~~~~~~-----~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 52 MPLHIIDTAGLREASD-----EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp EEEEEEECCCCSCCSS-----HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred eEEEEEECCCcccchh-----HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 3578999999865211 111111122446789999998876654321 2122344444444555789999999999
Q ss_pred CCCC
Q 007054 219 LMDK 222 (620)
Q Consensus 219 ~~~~ 222 (620)
+.+.
T Consensus 127 l~~~ 130 (172)
T 2gj8_A 127 ITGE 130 (172)
T ss_dssp HHCC
T ss_pred CCcc
Confidence 8653
No 55
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=1.2e-12 Score=141.99 Aligned_cols=130 Identities=17% Similarity=0.279 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+++|.+|+|||||+|+|+|..... ++..|
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~-----~~~~~----------------------------------------- 227 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVI-----VSNVA----------------------------------------- 227 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE-----ECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccc-----cCCCC-----------------------------------------
Confidence 56799999999999999999999986422 22222
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
|.+.... ...+.. +...++||||||+.+....... ...........|++.+|++|++++ +...+..+ .
T Consensus 228 ---gtt~~~~--~~~~~~---~~~~~~l~DT~G~~~~~~~~~~--~e~~~~~~~~~~~~~ad~~llviD-~~~~~~~~-~ 295 (456)
T 4dcu_A 228 ---GTTRDAV--DTSFTY---NQQEFVIVDTAGMRKKGKVYET--TEKYSVLRALKAIDRSEVVAVVLD-GEEGIIEQ-D 295 (456)
T ss_dssp -------CTT--SEEEEE---TTEEEEETTGGGTTTBTTBCCC--CSHHHHHHHHHHHHHCSEEEEEEE-TTTCCCHH-H
T ss_pred ---CeEEEEE--EEEEEE---CCceEEEEECCCCCcCcccchH--HHHHHHHHHHHHHhhCCEEEEEEe-CCCCcCHH-H
Confidence 0000010 111111 2247899999998764322111 112222234568899999877655 44444333 3
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~ 224 (620)
..++..+...+.++|+|+||+|+.+...
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCS
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCch
Confidence 4456655557899999999999987543
No 56
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.32 E-value=5.3e-12 Score=121.06 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 53 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 53 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEE--------------------------------------
Confidence 457999999999999999999998875 32222222111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
.+.+ ......+.|+||||... ...+...|+..+|++|++++..+.+- ...
T Consensus 54 --------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 105 (206)
T 2bov_A 54 --------------KVVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATA 105 (206)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0011 11123688999999543 14566778899999988775544221 011
Q ss_pred HHHHHH-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 195 DAMKLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 195 ~~l~l~-~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
.++..+ ......+.++++|+||+|+.+......+.+.......+..|+.+.+..+.++++.+..+
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 222222 33344578999999999997643211111111111223456666666555555444433
No 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=1.2e-12 Score=124.64 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+ ... .|... ..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~~~~~-~~-------------------------------------- 60 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDH-NIS-PTIGA-SF-------------------------------------- 60 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCC-CCSSE-EE--------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCC-CcC-CCcce-eE--------------------------------------
Confidence 45699999999999999999999887521 111 01000 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
....+.+ ......+.|+||||.... ..+...|++.+|++|++++..+..- ...
T Consensus 61 -----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~ 115 (192)
T 2fg5_A 61 -----------MTKTVPC-GNELHKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITKQDSFYTLK 115 (192)
T ss_dssp -----------EEEEEEC-SSSEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCTHHHHHHH
T ss_pred -----------EEEEEEe-CCEEEEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCCHHHHHHHH
Confidence 0000111 112346899999995431 3345678899999988776544321 012
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
.++..+....+.+.++++|+||+|+.+......+.........+..|+.+.+.++.++++.+
T Consensus 116 ~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 116 KWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 23444455555678999999999997533211111111111233456666666555554433
No 58
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.32 E-value=1.2e-12 Score=141.25 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|++||++|+|||||+|+|+|..+.. ++..|
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~-----~~~~~----------------------------------------- 207 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVI-----VSNVA----------------------------------------- 207 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE-----EC--------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCcee-----ecCCC-----------------------------------------
Confidence 45799999999999999999999987521 11111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
|.+.... ...+.. +...+.||||||+.+..... +.+..........|++.+|+++++++. +.....+ .
T Consensus 208 ---gtT~d~~--~~~~~~---~~~~~~l~DT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~llv~D~-~~~~s~~-~ 275 (436)
T 2hjg_A 208 ---GTTRDAV--DTSFTY---NQQEFVIVDTAGMRKKGKVY--ETTEKYSVLRALKAIDRSEVVAVVLDG-EEGIIEQ-D 275 (436)
T ss_dssp ---------C--CEEEEE---TTEEEEETTHHHHTCBTTBC--CCCSHHHHHHHHHHHHHCSEEEEEEET-TTCCCHH-H
T ss_pred ---Cceeeee--EEEEEE---CCeEEEEEECCCcCcCcccc--chHHHHHHHHHHHHHHhCCEEEEEEcC-CcCCcHH-H
Confidence 0000000 011111 12358999999986533211 111122112234688899988776654 4444333 3
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGT 224 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~ 224 (620)
..++..+...+.++|+|+||+|+.+...
T Consensus 276 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 276 KRIAGYAHEAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCcch
Confidence 4566666556899999999999987543
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.32 E-value=4.1e-12 Score=121.26 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCC-CCCceEEEeccCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP-TGERTFGVLTKLD 218 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~-~~~rti~VltK~D 218 (620)
..+.|+||||.... ..+...|++.+|++|++++..+. ........+...+.. .+.++++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFDISNS-NTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 46899999995331 23466789999998887655432 212222222222211 2389999999999
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.32 E-value=2.7e-12 Score=118.50 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=71.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|++..+ +.....++.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 41 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR----------------------------------------- 41 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-----------------------------------------
Confidence 4899999999999999999998765 2222111111000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~ 196 (620)
..+.+ ......+.++||||.... ..+...|++.+|++|++++..+.. +. ...+
T Consensus 42 -----------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 42 -----------KQVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96 (167)
T ss_dssp -----------EEEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00001 111236889999996532 234567888899998877554421 11 1122
Q ss_pred HH-HHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MK-LAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~-l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+. +.+.....+.++++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhhCcCCCcEEEEEECcccccc
Confidence 22 333344557899999999999754
No 61
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=2.6e-12 Score=119.06 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=56.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhCC--CCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDP--TGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~~--~~~rti~Vlt 215 (620)
..+.++||||.... ..+...|+..+|++|++++..+.. +. ...++..+..... .+.++++|+|
T Consensus 51 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 51 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 35889999996531 345667888899998877655422 11 1122333333321 3689999999
Q ss_pred cCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
|+|+.+................+..|+.+.+.++.++++
T Consensus 118 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred ccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHH
Confidence 999975432111111111112234556666655555443
No 62
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.30 E-value=2.8e-12 Score=120.00 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+ +.....++..... .
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~-~------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYT-K------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEE-E-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEE-E-------------------------------------
Confidence 456999999999999999999999865 2222222211100 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
.+.+ ......+.|+||||.... ..+...|++.+|++|++++..+..- . ..
T Consensus 49 --------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 49 --------------ICSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVG 100 (181)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHH
Confidence 0001 111246789999996432 2234567788999988775544211 0 11
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAM-KLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l-~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++ .+.+.....+.++++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 122 2334455667899999999999764
No 63
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.30 E-value=6.9e-12 Score=121.65 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=60.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCC----CCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP----TGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~----~~~rti~Vlt 215 (620)
..+.|+||||. +....+...|++.+|++|++++..+. ........+...+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESH-------------HHHHHHHHHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCc-------------HhHHhHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 46899999993 34566788899999999887654432 222233334444443 4678999999
Q ss_pred cCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
|+|+.+......+.........+..|+.+.+.++.++++.+.
T Consensus 150 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHH
T ss_pred CCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHH
Confidence 999975332111111111112234566666655554444333
No 64
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=2.5e-12 Score=122.21 Aligned_cols=121 Identities=20% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
....+|+|+|.+|+|||||+|+|++..+.+......+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~------------------------------------------- 57 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG------------------------------------------- 57 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET-------------------------------------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee-------------------------------------------
Confidence 3567999999999999999999998765221110000
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~ 193 (620)
.......+.+ ......+.|+||||. +....+...|++.+|++|++++..+..- ..
T Consensus 58 ---------~~~~~~~~~~-~~~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 114 (191)
T 3dz8_A 58 ---------IDFKVKTVYR-HEKRVKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNAV 114 (191)
T ss_dssp ---------TTEEEEEEEE-TTTTEEEEEECHHHH-------------HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred ---------eEEEEEEEEE-CCEEEEEEEEeCCCh-------------HHHHHHHHHHHccCCEEEEEEECcCHHHHHHH
Confidence 0000011111 122346899999993 3346678889999999988776543211 11
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..++..+......+.++++|+||+|+.+.
T Consensus 115 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 115 QDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 23445555555567899999999998654
No 65
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.30 E-value=3.5e-12 Score=120.96 Aligned_cols=120 Identities=20% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+ . ...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~-~~~------------------------------------- 60 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--I-DFK------------------------------------- 60 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--C-EEE-------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--E-EEE-------------------------------------
Confidence 356999999999999999999999875221111000 0 000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~ 194 (620)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +. ..
T Consensus 61 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 114 (189)
T 2gf9_A 61 ------------VKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQ 114 (189)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHH
Confidence 000111 112246889999996432 123457889999998877654422 11 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 115 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 115 DWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 2344444444557899999999999754
No 66
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=4.9e-12 Score=121.67 Aligned_cols=120 Identities=20% Similarity=0.303 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|++|+|||||+|+|++..+ +.....+.... ..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~--~~------------------------------------- 64 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD--FM------------------------------------- 64 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee--EE-------------------------------------
Confidence 456999999999999999999998765 32221111000 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
...+.+ ......+.|+||||... ...+...|++.+|++|++++..+..- . ..
T Consensus 65 ------------~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~ 118 (201)
T 2ew1_A 65 ------------IKTVEI-NGEKVKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCEESFRCLP 118 (201)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 000111 11123688999999532 25567889999999988776544321 0 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+....+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3445555555667899999999999753
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.30 E-value=1.5e-12 Score=126.48 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||||..... .+...|+..+|++|++++..+..- ....++..+....+.+.++++|+||+
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 458999999965421 223457888999988776544311 11233455555556678999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHHH
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~~ 262 (620)
|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 172 (218)
T 4djt_A 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARI 172 (218)
T ss_dssp TCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 998653322222222222344568888888887777665555433
No 68
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.30 E-value=4.2e-12 Score=122.13 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+ +......+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 44 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVD----------------------------------------- 44 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCC-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccce-----------------------------------------
Confidence 456999999999999999999999875 22111110000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~-- 194 (620)
+. ...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.+ ...
T Consensus 45 --------~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d~~~~~-s~~~~ 99 (206)
T 2bcg_Y 45 --------FK--IKTVEL-DGKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYDVTDQE-SFNGV 99 (206)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEETTCHH-HHHHH
T ss_pred --------eE--EEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEECcCHH-HHHHH
Confidence 00 001111 111236899999996432 223456889999998877654422 111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 -~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 100 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 100 KMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 2334444445557899999999999864
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.30 E-value=2.4e-12 Score=120.30 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=83.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|++..+.+......+.-. .
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~--------------------------------------- 52 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF---L--------------------------------------- 52 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEE---E---------------------------------------
Confidence 5899999999999999999998765222111111000 0
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~ 196 (620)
...+.+ ......+.|+||||.... ..+...|+..+|++|++++..+.. +. ...+
T Consensus 53 ----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 53 ----------SKTMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108 (179)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred ----------EEEEEE-CCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 000011 111236899999995431 334567888999998877654321 11 1123
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+..+....+.+.++++|+||+|+.+................+..|+.+.+..+.++++
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred HHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 3333333345688999999999975432111111111112234566666665554443
No 70
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.30 E-value=4e-12 Score=117.58 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=71.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|++..+.+......+... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~--------------------------------------- 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF---L--------------------------------------- 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE---E---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---E---------------------------------------
Confidence 4899999999999999999998875321111111000 0
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH---
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD--- 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~--- 195 (620)
...+.+ ......+.++||||... ...+...|++.+|++|++++..+.. ....
T Consensus 42 ----------~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 96 (170)
T 1ek0_A 42 ----------TQRVTI-NEHTVKFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYDVTKPQ-SFIKARH 96 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCHH-HHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEecCChH-HHHHHHH
Confidence 000111 11123689999999543 1345677899999998877654421 1122
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
++.........+.++++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 97 WVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 233333333457889999999999864
No 71
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.30 E-value=2.1e-12 Score=119.83 Aligned_cols=117 Identities=23% Similarity=0.416 Sum_probs=70.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
++|+++|++|+|||||+|+|+|..+ +.+ ..|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~-----~~~------------------------------------------- 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIG-----NWP------------------------------------------- 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-ecc-----CCC-------------------------------------------
Confidence 5899999999999999999999764 221 111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~~ 196 (620)
+.+ +....-.+.+ +...+.++||||....... . ..+.+...|+. .+++++++++..+.+ ..
T Consensus 35 -~~t--~~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~D~~~~~----~~ 97 (165)
T 2wji_A 35 -GVT--VEKKEGEFEY---NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATALE----RN 97 (165)
T ss_dssp ---C--CCCCEEEEEE---TTEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEEETTCHH----HH
T ss_pred -Ccc--eeeeEEEEEE---CCcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEecCCchh----Hh
Confidence 000 0000111111 1246899999998763221 1 22355666765 799887766554421 12
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
..+..++...+.++++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhcc
Confidence 2233333334789999999999864
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.30 E-value=6e-12 Score=118.75 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=84.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 43 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRK---------------------------------------- 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEE----------------------------------------
Confidence 4899999999999999999998875 22222222111000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~ 196 (620)
.+. .......+.|+||||... ...+...|+..+|+++++++..+..- ....+
T Consensus 44 ------------~~~-~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 44 ------------QVV-IDGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97 (189)
T ss_dssp ------------EEE-ETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred ------------EEE-ECCcEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 000 111123578899999543 23345678888999988766544211 01122
Q ss_pred HHHH-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCH
Q 007054 197 MKLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (620)
Q Consensus 197 l~l~-~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~ 258 (620)
+... ......+.++++|+||+|+.+....... ........+..|+.+++..+.++++.+..
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQ-AQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHH-HHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccccCHHH-HHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 2222 3344557899999999999854432111 11111223345666666655555544443
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.29 E-value=4.2e-12 Score=116.70 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=82.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|++..+.+ ....++....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~------------------------------------------ 40 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSY------------------------------------------ 40 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEE------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEE------------------------------------------
Confidence 379999999999999999999886522 1111111000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~~ 196 (620)
...+.+ ......+.++||||.... ..+...|+..+|++|++++..+.... ...+
T Consensus 41 ----------~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 96 (166)
T 2ce2_X 41 ----------RKQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96 (166)
T ss_dssp ----------EEEEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHH
Confidence 000011 111245789999996431 23456788889999887765432210 1122
Q ss_pred HHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 197 MKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 197 l~l~~~-~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+..+.. ....+.++++|+||+|+.++.....+ ........+..++.+++.++.++++
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHH-HHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhcccCHHH-HHHHHHHcCCeEEEecCCCCCCHHH
Confidence 222333 23347899999999999864322111 1111122334566666655554443
No 74
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.29 E-value=4.5e-12 Score=117.58 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+.. ...|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~------------------------------------------ 40 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIG------------------------------------------ 40 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSS------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCc------------------------------------------
Confidence 45699999999999999999999876511 011110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+.. -.+.+ ....+.++||||.... ..+...|++.+|++|++++..+.. .-...
T Consensus 41 --------~~~--~~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 93 (171)
T 1upt_A 41 --------FNV--ETVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRD-RIGIS 93 (171)
T ss_dssp --------EEE--EEEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCT-THHHH
T ss_pred --------cce--EEEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 000 00111 1457899999997531 334567889999998877654432 11122
Q ss_pred HHHH-HHhC---CCCCceEEEeccCCCCCCC
Q 007054 197 MKLA-REVD---PTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~-~~~~---~~~~rti~VltK~D~~~~~ 223 (620)
.... ..+. ..+.++++|+||+|+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 94 KSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 2222 2222 2578999999999998653
No 75
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.29 E-value=3.4e-12 Score=122.42 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~------------------------------------------- 60 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV------------------------------------------- 60 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------C-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc-------------------------------------------
Confidence 4569999999999999999999998752211111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
.+. ...+.+ ......+.|+||||... ...+...|++.+|++|++++..+..- . ..
T Consensus 61 -------~~~--~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 117 (200)
T 2o52_A 61 -------EFG--SRVVNV-GGKTVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRETYNSLA 117 (200)
T ss_dssp -------CEE--EEEEEE-TTEEEEEEEECCTTHHH-------------HSCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred -------eeE--EEEEEE-CCeeeEEEEEcCCCcHh-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 000 001111 11124789999999432 23345678899999988776544221 0 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
.++..+......+.++++|+||+|+.+... ...+. .......+..|+.+.+..+.++++.+..+
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 233334444555789999999999975332 11111 10111233456666666666655544443
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.29 E-value=5.5e-12 Score=118.64 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+ +......+.... ..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 57 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LK------------------------------------- 57 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EE-------------------------------------
Confidence 445899999999999999999998764 322222221110 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~ 194 (620)
.+ ........+.++||||.... ..+...|++.+|++|++++..+.. +. ..
T Consensus 58 --------------~~-~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 58 --------------HT-EIDNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp --------------EE-EETTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EE-EeCCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 01111234678999995432 233456788899998877654421 10 11
Q ss_pred HHHH-HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeC-ChhhhhccC
Q 007054 195 DAMK-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNR-SQADINRNI 256 (620)
Q Consensus 195 ~~l~-l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~-s~~~~~~~~ 256 (620)
.++. +.+.....+.++++|+||+|+.+......+.........+..|+.+.+. .+.++++.+
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence 2222 2333455678999999999997643321111111112234567777766 555544433
No 77
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=123.57 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+ +.....++.... ..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 63 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF-SEGYDPTVENTY-SK------------------------------------- 63 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSCCCCCSEEEE-EE-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC-CCCCCCccceEE-EE-------------------------------------
Confidence 456899999999999999999999875 222211111110 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.+ ........+.|+||||..... .+...|++.+|++|++++..+.+- ....
T Consensus 64 --------------~~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s-~~~~ 114 (201)
T 3oes_A 64 --------------IV-TLGKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLHS-FQVI 114 (201)
T ss_dssp --------------EE-C----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHHH-HHHH
T ss_pred --------------EE-EECCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHHH-HHHH
Confidence 00 011123467899999965421 234568899999988776544221 1222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 197 MKLAREV----DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 197 l~l~~~~----~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
..+...+ ...+.++++|+||+|+.+................+..|+.+++..+.++++.+..+.
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHH
Confidence 2233332 234679999999999975433111111111223345677777777777666555443
No 78
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.29 E-value=7.9e-12 Score=117.16 Aligned_cols=151 Identities=13% Similarity=0.162 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+ .
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~----------------------------------------- 47 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG--A----------------------------------------- 47 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC--C-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce--e-----------------------------------------
Confidence 345899999999999999999998875221111100 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~-- 194 (620)
.+. ...+.+ ......+.|+||||... ...+...|++.+|++|++++..+. ....
T Consensus 48 -------~~~--~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 103 (181)
T 2efe_B 48 -------AFF--SQTLAV-NDATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVFDVTNQ-ASFERA 103 (181)
T ss_dssp -------SEE--EEEEEE-TTEEEEEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEEETTCH-HHHHHH
T ss_pred -------EEE--EEEEEE-CCEEEEEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 000 000111 11124689999999543 133456788999999887654432 2112
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 195 -DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 195 -~~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
.++..+......+.++++|+||+|+.+......+.+.......+..|+.+.+..+.++++
T Consensus 104 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 104 KKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 233333444444688999999999976433111111111112234456666655555443
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.29 E-value=6.9e-12 Score=119.00 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|+|...++.... .|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~----------------------------------------- 57 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGF----------------------------------------- 57 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-Cccce-----------------------------------------
Confidence 456999999999999999999999863232221 11110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch-
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS- 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~- 194 (620)
.. - .+.. +...+.|+||||.... ..+...|++++|++|++++..+.. +...
T Consensus 58 ---------~~--~--~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 110 (190)
T 2h57_A 58 ---------SI--E--KFKS-SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVIDSSDRLRMVVAK 110 (190)
T ss_dssp ---------EE--E--EEEC-SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEETTCHHHHHHHH
T ss_pred ---------eE--E--EEEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 0 0111 2367899999995432 334567889999998876654321 1111
Q ss_pred HHHH-HHHHhCC--CCCceEEEeccCCCCCC
Q 007054 195 DAMK-LAREVDP--TGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~-l~~~~~~--~~~rti~VltK~D~~~~ 222 (620)
..+. +...... .+.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 1221 2222221 47899999999999864
No 80
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.29 E-value=8.9e-12 Score=118.10 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 55 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV------------------------------------------- 55 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC-------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce-------------------------------------------
Confidence 4469999999999999999999987652211111100
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHH-HHHHHhhcCCCeEEEEeccCCchh--cc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDI--AT 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~-~~~~~yi~~~~~iil~V~~a~~d~--~~ 193 (620)
.+. ...+.+ ......+.|+||||.. ... .+...|++.+|++|++++..+..- ..
T Consensus 56 -------~~~--~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 56 -------DFR--ERAVDI-DGERIKIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp -------CEE--EEEEEE-TTEEEEEEEEECCCSH-------------HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred -------EEE--EEEEEE-CCEEEEEEEEECCCch-------------hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 000 001111 1112468999999942 223 567789999999988776544211 01
Q ss_pred hHHHHHH-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCCh
Q 007054 194 SDAMKLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ 249 (620)
Q Consensus 194 ~~~l~l~-~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~ 249 (620)
..++..+ +.....+.++++|+||+|+.+......+.........+..|+.+++.++
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 2233333 3333567899999999999754321111111111123345666666655
No 81
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.28 E-value=4.8e-12 Score=120.26 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 56 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV------------------------------------------- 56 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCS-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc-------------------------------------------
Confidence 3458999999999999999999988753221111110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
.+. ...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+..- . ..
T Consensus 57 -------~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 113 (191)
T 2a5j_A 57 -------EFG--ARMVNI-DGKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLT 113 (191)
T ss_dssp -------SEE--EEEEEE-TTEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred -------eeE--EEEEEE-CCEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000 001111 111246899999995432 2235678899999988776544221 1 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 114 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 114 SWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 2344444444557899999999999753
No 82
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.28 E-value=1.3e-11 Score=115.23 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+.+......+ . ...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~-~~~------------------------------------- 45 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--V-EFL------------------------------------- 45 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--E-EEE-------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--e-eEE-------------------------------------
Confidence 456999999999999999999998765211110000 0 000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~ 194 (620)
...+.+ ......+.|+||||... ...+...|++.+|++|++++..+.. +.. .
T Consensus 46 ------------~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 99 (177)
T 1wms_A 46 ------------NKDLEV-DGHFVTMQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS 99 (177)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCCCGG-------------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCchh-------------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 001111 11124689999999532 2456778999999998876554322 111 1
Q ss_pred HHHHHHHHhC----CCCCceEEEeccCCCCCCCCcH---HHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 195 DAMKLAREVD----PTGERTFGVLTKLDLMDKGTNA---LDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 195 ~~l~l~~~~~----~~~~rti~VltK~D~~~~~~~~---~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
.++....... ..+.++++|+||+|+.+..... .++.. ......|+.+++..+.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~ 165 (177)
T 1wms_A 100 NWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR---DNGDYPYFETSAKDATNVAAAF 165 (177)
T ss_dssp HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH---HTTCCCEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH---hcCCceEEEEeCCCCCCHHHHH
Confidence 2222222221 2567999999999997433221 22211 1223456666666655554433
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.28 E-value=8.8e-12 Score=118.83 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...++|+|+|.+|+|||||+|+|++..+.......++ ..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~-~~---------------------------------------- 53 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATV-GY---------------------------------------- 53 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCS-SE----------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccc-ce----------------------------------------
Confidence 3567999999999999999999999876221211111 00
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
... .+ ......+.|+||||.... ..+...|++.+|++|++++..+.+- -..
T Consensus 54 ----------~~~----~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s-~~~ 104 (199)
T 4bas_A 54 ----------NVE----TF-EKGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSDHLR-LCV 104 (199)
T ss_dssp ----------EEE----EE-EETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTCGGG-HHH
T ss_pred ----------eEE----EE-EeCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCcHHH-HHH
Confidence 000 01 122357899999997432 3445678999999988776554321 112
Q ss_pred HHHHHHHhCC-----------CCCceEEEeccCCCCCCC
Q 007054 196 AMKLAREVDP-----------TGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 196 ~l~l~~~~~~-----------~~~rti~VltK~D~~~~~ 223 (620)
.......+.. .+.++|+|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 105 VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 2122222211 268999999999998653
No 84
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.27 E-value=6.4e-12 Score=117.68 Aligned_cols=153 Identities=11% Similarity=0.148 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+.+......+.-.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 457999999999999999999999875221111110000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
....+.+.+.....+.|+||||... ...+...|++.+|++|++++..+..- . ..
T Consensus 46 -----------~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 -----------LTKEVTVDGDKVATMQVWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVTNASSFENIK 101 (182)
T ss_dssp -----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEEcCCcEEEEEEEECCCChH-------------hhhhhHHHhhcCCEEEEEEECCChHHHHHHH
Confidence 0001111112234689999999422 34556778999999988776544321 0 11
Q ss_pred HHHHHHHHh----CCCCCceEEEeccCCCCCCCCc-----HHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 195 DAMKLAREV----DPTGERTFGVLTKLDLMDKGTN-----ALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 195 ~~l~l~~~~----~~~~~rti~VltK~D~~~~~~~-----~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
.++...... ...+.++++|+||+|+.+.... ..++.. ......|+.+++.++.++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBSHHHHHH
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCCCeEEEEecCCCCCHHHHHH
Confidence 122222222 2257899999999999643221 112111 02234566666665555544333
No 85
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.27 E-value=3.1e-12 Score=118.15 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=70.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|.+|+|||||+|+|++..+ +......+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~------------------------------------------ 41 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVD------------------------------------------ 41 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSS------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEE------------------------------------------
Confidence 46899999999999999999998765 22111111000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~ 195 (620)
+. ...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +. ...
T Consensus 42 -------~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (168)
T 1z2a_A 42 -------FL--ERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAISS 98 (168)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------EE--EEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 00 001111 111246899999995431 233567888999998877654432 11 111
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
++..+.... .+.++++|+||+|+.+.
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 222222222 36899999999999754
No 86
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.27 E-value=7.1e-12 Score=116.06 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=53.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHH-HHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLA-REVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~-~~~~~~~~rti~VltK 216 (620)
..+.++||||..... ..+...|++.+|+++++++..+.. +. ...++... ......+.++++|+||
T Consensus 51 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 51 VTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 467899999975421 113345677899998877654421 10 11222222 3233347899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhcc
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~ 255 (620)
+|+.+......+.........+..|+.+++.++.++++.
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 157 (169)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred cchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHH
Confidence 999754322111111111223445566666555554443
No 87
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=118.97 Aligned_cols=120 Identities=23% Similarity=0.290 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+ +.... .|.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~-~t~------------------------------------------- 62 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQG-STI------------------------------------------- 62 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCCC-CCc-------------------------------------------
Confidence 456899999999999999999998765 21111 010
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~ 194 (620)
| ..+. ...+.+ ......+.|+||||... ...+...|++.+|++|++++..+.. +. ..
T Consensus 63 ---~--~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 121 (201)
T 2hup_A 63 ---G--VDFT--MKTLEI-QGKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSVP 121 (201)
T ss_dssp -------CEE--EEEEEE-TTEEEEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHH
T ss_pred ---c--eEEE--EEEEEE-CCEEEEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0 0000 001111 11124789999999532 2456778999999998877654421 11 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 122 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 122 HWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 2344444444557899999999999753
No 88
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.27 E-value=9.2e-12 Score=132.78 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..+.|+|+|..|+|||||+|+|+|..+.+.+.. .+|.-
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d----------------------------------------- 71 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTD----------------------------------------- 71 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CC-----------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeee-----------------------------------------
Confidence 567999999999999999999999876222111 11111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
.....+.......+.||||||..+...-++. ..+.+..|+..+|++|++++. ...-....
T Consensus 72 -------------~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~------~~~~~~~~l~~aD~vllVvD~-~~~~~~~~ 131 (423)
T 3qq5_A 72 -------------PVYKSMELHPIGPVTLVDTPGLDDVGELGRL------RVEKARRVFYRADCGILVTDS-APTPYEDD 131 (423)
T ss_dssp -------------CCEEEEEETTTEEEEEEECSSTTCCCTTCCC------CHHHHHHHHTSCSEEEEECSS-SCCHHHHH
T ss_pred -------------eEEEEEEECCCCeEEEEECcCCCcccchhHH------HHHHHHHHHhcCCEEEEEEeC-CChHHHHH
Confidence 1111122222237899999998764322111 122356788999999887654 32222333
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHHH
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~~ 261 (620)
++..++. .+.++|+|+||+|+.+.... +.........+..++.+++..+.++++.+..+..
T Consensus 132 ~l~~l~~---~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 132 VVNLFKE---MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp HHHHHHH---TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred HHHHHHh---cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444443 47899999999999876543 2222223344567788888877777665555443
No 89
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.26 E-value=9.1e-12 Score=115.14 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.++||||... ...+...|++.+|++|++++..+.. +.. ..++..+......+.++++|.||+
T Consensus 55 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 121 (170)
T 1r2q_A 55 VKFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 4688999999543 1344667889999998877654422 111 122233333334467889999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+.+.
T Consensus 122 Dl~~~ 126 (170)
T 1r2q_A 122 DLANK 126 (170)
T ss_dssp GGGGG
T ss_pred cCccc
Confidence 99754
No 90
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.26 E-value=1.2e-12 Score=135.99 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=90.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
+|.|++||.+|||||||||+|++......+...+|..|+.-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--------------------------------------- 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--------------------------------------- 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE---------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE---------------------------------------
Confidence 67999999999999999999998764222333444444110
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCC---ch-hcc
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---QD-IAT 193 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~---~d-~~~ 193 (620)
.+..++...++|+||||+...+..+. .+ .....++++.++++|++++.++ .+ +..
T Consensus 199 ---------------~v~~~~~~~~~l~DtPG~i~~a~~~~--~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 199 ---------------MVETDDGRSFVMADLPGLIEGAHQGV--GL----GHQFLRHIERTRVIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp ---------------EEECSSSCEEEEEEHHHHHHHTTCTT--TT----HHHHHHHHHHCCEEEEEEESSCSSCCCHHHH
T ss_pred ---------------EEEeCCCceEEEecCCCCcccccccc--hh----HHHHHHHHHhccEEEEEEECCcccccChHHH
Confidence 02222235789999999875332211 11 1223445667999988777654 22 211
Q ss_pred -hHHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCH
Q 007054 194 -SDAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (620)
Q Consensus 194 -~~~l~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~ 258 (620)
..++..+..+.+ ...+.++|+||+|+.+......++... ......++.+++.+..++++.+..
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~--l~~~~~v~~iSA~tg~gi~eL~~~ 323 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK--LTDDYPVFPISAVTREGLRELLFE 323 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH--CCSCCCBCCCSSCCSSTTHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHH--hhcCCCEEEEECCCCcCHHHHHHH
Confidence 122333444443 468999999999998643222222111 111145666666666555544443
No 91
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.26 E-value=6.5e-12 Score=117.94 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|++..+ +.....++.... ..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 45 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTF-TK------------------------------------- 45 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccE-EE-------------------------------------
Confidence 356999999999999999999997664 322222221110 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH-
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~- 195 (620)
.+. .......+.|+||||..... .+...|++.+|++|++++..+.+- -..
T Consensus 46 --------------~~~-~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s-~~~~ 96 (181)
T 3t5g_A 46 --------------LIT-VNGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKS-FEVI 96 (181)
T ss_dssp --------------EEE-ETTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHH-HHHH
T ss_pred --------------EEE-ECCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHH-HHHH
Confidence 000 11112467899999975431 223468889999988776544211 111
Q ss_pred --HH-HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 196 --AM-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 196 --~l-~l~~~~~~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
++ .+.+.....+.++++|+||+|+.+......+.........+..|+.+.+..+.++++.+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 97 KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164 (181)
T ss_dssp HHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Confidence 12 233444455789999999999975443211112111223345677777777777665554443
No 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.26 E-value=1.9e-11 Score=112.60 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=71.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|++|+|||||+|++++..+ +.. ..|..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~~--~~t~~--------------------------------------------- 33 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIG--------------------------------------------- 33 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SCC--CCCSS---------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Ccc--cCcCc---------------------------------------------
Confidence 799999999999999999998765 211 11110
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHH
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l 199 (620)
+. ... +.. ....+.++||||... ...+...|++++|++|++++..+.. .-......
T Consensus 34 -----~~--~~~--~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~ 89 (164)
T 1r8s_A 34 -----FN--VET--VEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RVNEAREE 89 (164)
T ss_dssp -----CC--EEE--EEC-SSCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEETTCGG-GHHHHHHH
T ss_pred -----ee--EEE--EEE-CCEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHH
Confidence 00 001 111 236789999999743 2456778999999998877654431 11222222
Q ss_pred HHHh----CCCCCceEEEeccCCCCCC
Q 007054 200 AREV----DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 200 ~~~~----~~~~~rti~VltK~D~~~~ 222 (620)
...+ ...+.++++|+||+|+.+.
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 90 LMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 2222 2236899999999999764
No 93
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.25 E-value=2.1e-11 Score=122.81 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhccCCCCCCccccccCCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCc-ccccccEEEEEEecCCCCcc
Q 007054 11 VNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQE 89 (620)
Q Consensus 11 ~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~ 89 (620)
..++.+.+..+...+. .-++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|..+.
T Consensus 22 ~~~l~~~~~~~~~~~~----------~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~------------- 78 (270)
T 1h65_A 22 QTKLLELLGNLKQEDV----------NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV------------- 78 (270)
T ss_dssp HHHHHHHHHHHHHTTC----------CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE-------------
T ss_pred HHHHHHHHHHHhhcCC----------CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE-------------
Confidence 3555555555544432 457999999999999999999999876433321 2222221
Q ss_pred eeeeecCCCCccCChHHHHHHHHHHHhhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH
Q 007054 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM 169 (620)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~ 169 (620)
...+. .....++||||||+.+.... .....+.
T Consensus 79 -----------------------------------------~~~~~-~~~~~l~iiDTpG~~~~~~~------~~~~~~~ 110 (270)
T 1h65_A 79 -----------------------------------------MVSRS-RAGFTLNIIDTPGLIEGGYI------NDMALNI 110 (270)
T ss_dssp -----------------------------------------EEEEE-ETTEEEEEEECCCSEETTEE------CHHHHHH
T ss_pred -----------------------------------------EEEEe-eCCeEEEEEECCCCCCCccc------hHHHHHH
Confidence 11111 12356999999998764221 1223334
Q ss_pred HHHhh--cCCCeEEEEeccCCchhcch--HHHHHHHHhCCCC--CceEEEeccCCCCCCC
Q 007054 170 VRSYV--EKPNSVILAISPANQDIATS--DAMKLAREVDPTG--ERTFGVLTKLDLMDKG 223 (620)
Q Consensus 170 ~~~yi--~~~~~iil~V~~a~~d~~~~--~~l~l~~~~~~~~--~rti~VltK~D~~~~~ 223 (620)
+..|+ ..+|++++++......+... ..+..+....... .++++|+||+|+.++.
T Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 45554 35888877753322233222 2333333322211 5899999999997643
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.25 E-value=3.8e-11 Score=113.75 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-.+|+|+|.+|+|||||+|+|++..+ +.... .|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~-~t~~~------------------------------------------ 57 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQF-NEDMI-PTVGF------------------------------------------ 57 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCC-CCCSE------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCC-CCccC-CCCce------------------------------------------
Confidence 45899999999999999999998765 21111 11000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l 197 (620)
. ... +. .....+.|+||||.. ....+...|++.+|++|++++..+.+ .-....
T Consensus 58 --------~--~~~--~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~ 110 (188)
T 1zd9_A 58 --------N--MRK--IT-KGNVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYMVDAADQE-KIEASK 110 (188)
T ss_dssp --------E--EEE--EE-ETTEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEEEETTCGG-GHHHHH
T ss_pred --------e--EEE--EE-eCCEEEEEEECCCCH-------------hHHHHHHHHHccCCEEEEEEECCCHH-HHHHHH
Confidence 0 000 11 123568899999953 23556778899999998877654422 112222
Q ss_pred HHHHHh-C---CCCCceEEEeccCCCCCC
Q 007054 198 KLAREV-D---PTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 198 ~l~~~~-~---~~~~rti~VltK~D~~~~ 222 (620)
.....+ . ..+.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 111 NELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 222222 2 257899999999999864
No 95
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.25 E-value=8.9e-12 Score=119.26 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+ ......
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~-------------------------------------------- 61 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATL-------------------------------------------- 61 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCc--------------------------------------------
Confidence 45699999999999999999999887521 110000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~ 194 (620)
| ..+. ...+.+ ......+.|+||||... ...+...|++.+|++|++++..+..- . ..
T Consensus 62 ---~--~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 62 ---G--VDFQ--MKTLIV-DGERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120 (199)
T ss_dssp --------CE--EEEEEE-TTEEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ---c--ceeE--EEEEEE-CCEEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHH
Confidence 0 0000 001111 11124689999999543 14567788899999988776543221 1 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
.++..++.....+.++++|+||+|+.
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccc
Confidence 23445555555578999999999986
No 96
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.24 E-value=7.8e-12 Score=119.99 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCC---CCCceEEEe
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDP---TGERTFGVL 214 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~---~~~rti~Vl 214 (620)
..+.|+||||.. ....+...|++.+|++|++++..+..- ....++..+....+ .+.++++|+
T Consensus 73 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 73 VELFLLDTAGSD-------------LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEEETTTTH-------------HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 468999999963 345677889999999988776544321 01223334444444 578999999
Q ss_pred ccCCCCC
Q 007054 215 TKLDLMD 221 (620)
Q Consensus 215 tK~D~~~ 221 (620)
||+|+.+
T Consensus 140 nK~Dl~~ 146 (208)
T 2yc2_C 140 NKTDLPP 146 (208)
T ss_dssp ECC----
T ss_pred ECcccch
Confidence 9999986
No 97
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.24 E-value=1.1e-11 Score=118.92 Aligned_cols=120 Identities=15% Similarity=0.228 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|+|..+.+......+.-. .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 46 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---L------------------------------------- 46 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE---E-------------------------------------
Confidence 456999999999999999999999876322111111000 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~ 194 (620)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +.. .
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (207)
T 1vg8_A 47 ------------TKEVMV-DDRLVTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVFDVTAPNTFKTLD 100 (207)
T ss_dssp ------------EEEEES-SSCEEEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEEECCCHHHHHHHH
Confidence 000000 111246899999995432 123346888999998877554322 111 1
Q ss_pred HHHHHHHH-hC---CCCCceEEEeccCCCCCC
Q 007054 195 DAMKLARE-VD---PTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~-~~---~~~~rti~VltK~D~~~~ 222 (620)
.++..... .. +.+.++++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 22222222 21 246799999999999843
No 98
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.24 E-value=2e-11 Score=115.61 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-.+|+|+|.+|+|||||+|+|++..+.+ ....++.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~---------------------------------------- 59 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYR---------------------------------------- 59 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEE----------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEE----------------------------------------
Confidence 3589999999999999999999886522 11111111100
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch---
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--- 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~--- 194 (620)
..+.+ ......+.|+||||... ...+...|++.+|++|++++..+.. ...
T Consensus 60 ------------~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 112 (190)
T 3con_A 60 ------------KQVVI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNSK-SFADIN 112 (190)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHH-HHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCChHH-------------HHHHHHHhhCcCCEEEEEEECcCHH-HHHHHH
Confidence 00011 11123588999999532 2445677899999998776554322 111
Q ss_pred HHHHHHHHh-CCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREV-DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~-~~~~~rti~VltK~D~~~~ 222 (620)
.++..+... ...+.++++|+||+|+.++
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 223333332 3357899999999999863
No 99
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.24 E-value=4.3e-12 Score=119.36 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=39.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||||... ...+...|++.+|++|++++..+.. +. ...++..+......+.++++|+||+
T Consensus 57 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (183)
T 2fu5_C 57 IKLQIWDTAGQER-------------FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC-
T ss_pred EEEEEEcCCCChh-------------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 4689999999533 2344567889999998877654421 10 1123333444444578999999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+.+.
T Consensus 124 Dl~~~ 128 (183)
T 2fu5_C 124 DVNDK 128 (183)
T ss_dssp -CCSC
T ss_pred cCCcc
Confidence 99764
No 100
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=1.5e-11 Score=117.38 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+ ....++... ..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~--~~------------------------------------- 66 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLEST--YR------------------------------------- 66 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEE--EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCce--EE-------------------------------------
Confidence 34589999999999999999999987522 111111000 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-ch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~ 194 (620)
..+.+ ......+.|+||||... ..+...|++.+|++|++++..+.+ +. ..
T Consensus 67 -------------~~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 118 (196)
T 2atv_A 67 -------------HQATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVL 118 (196)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHH
Confidence 00011 11124688999999753 344567888999998877654422 11 11
Q ss_pred HHHHHHHH-hCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLARE-VDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~-~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+.. ....+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 22333333 34457899999999999763
No 101
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.23 E-value=3.1e-11 Score=113.83 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|++++.. +.... .|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~----------------------------------------- 52 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGF----------------------------------------- 52 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSE-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCcc-----------------------------------------
Confidence 34699999999999999999999876 21111 11110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
... .+.+ +...+.++||||... ...+...|++.+|++|++++..+.. .-...
T Consensus 53 ---------~~~--~~~~---~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 104 (186)
T 1ksh_A 53 ---------NIK--TLEH---RGFKLNIWDVGGQKS-------------LRSYWRNYFESTDGLIWVVDSADRQ-RMQDC 104 (186)
T ss_dssp ---------EEE--EEEE---TTEEEEEEEECCSHH-------------HHTTGGGGCTTCSEEEEEEETTCGG-GHHHH
T ss_pred ---------ceE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEECcCHH-HHHHH
Confidence 000 1111 245789999999632 3445677899999998877654432 12222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCC
Q 007054 197 MKLAREV----DPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~~~~----~~~~~rti~VltK~D~~~~~ 223 (620)
......+ ...+.++++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 105 QRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 2222222 22468999999999998653
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.22 E-value=5.8e-12 Score=117.73 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=83.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|++|+|||||+|+|++..+ +......+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~--------------------------------------------- 39 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTI--------------------------------------------- 39 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTT---------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCce---------------------------------------------
Confidence 45899999999999999999998765 21111000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSD 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~ 195 (620)
| ..+. ...+.+.+.....+.|+||||.... ..+...|++.+|++|++++..+.+- . ...
T Consensus 40 --~--~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (178)
T 2hxs_A 40 --G--LDFF--LRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLED 100 (178)
T ss_dssp --T--SSEE--EEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred --e--EEEE--EEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 0 0000 0111111111257899999995431 2345678899999988776544321 1 112
Q ss_pred HHHHHHHhCC--CCCc-eEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 196 AMKLAREVDP--TGER-TFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 196 ~l~l~~~~~~--~~~r-ti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
++..+....+ .+.+ +++|+||+|+.+......+.........+..|+.+++.++.++++.+.
T Consensus 101 ~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 101 WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 2333333211 1344 799999999975332111111111112234566666666555544333
No 103
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.22 E-value=3.2e-11 Score=114.49 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|.+|+|||||+|+|+|..+.+ ...+..|
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~----------------------------------------- 82 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEP----------------------------------------- 82 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCC-----------------------------------------
Confidence 56899999999999999999999987522 1111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC-CchhcchH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA-NQDIATSD 195 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a-~~d~~~~~ 195 (620)
+.+..+ ....+.++||||...... .+.......+..+|++|++++.. +..- -..
T Consensus 83 ---~~~~~~------------~~~~~~l~Dt~G~~~~~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~ 137 (193)
T 2ged_A 83 ---LSAADY------------DGSGVTLVDFPGHVKLRY---------KLSDYLKTRAKFVKGLIFMVDSTVDPKK-LTT 137 (193)
T ss_dssp -------CC------------CCTTCSEEEETTCCBSSC---------CHHHHHHHHGGGEEEEEEEEETTCCHHH-HHH
T ss_pred ---ceeeee------------cCCeEEEEECCCCchHHH---------HHHHHHHhhcccCCEEEEEEECCCCchh-HHH
Confidence 000000 346889999999865321 12333344556689988876654 2111 111
Q ss_pred ---HH-HHHHHh---CCCCCceEEEeccCCCCCCC
Q 007054 196 ---AM-KLAREV---DPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 196 ---~l-~l~~~~---~~~~~rti~VltK~D~~~~~ 223 (620)
++ .+.... .+.+.++++|+||+|+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 138 TAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 11 111111 34578999999999998654
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.22 E-value=4.7e-11 Score=115.48 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+|+|++|+|||||+++|++..+ +.....++ .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~--~----------------------------------------- 41 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSIT--D----------------------------------------- 41 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCS--C-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcc--e-----------------------------------------
Confidence 457999999999999999999998875 22211111 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+...+.+.+.....+.|+||||... ....+...|++.+|++|++++..+..-.....
T Consensus 42 -----------~~~~~~~~~~~~~~~~i~Dt~G~~~------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 98 (214)
T 2fh5_B 42 -----------SSAIYKVNNNRGNSLTLIDLPGHES------------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98 (214)
T ss_dssp -----------EEEEEECSSTTCCEEEEEECCCCHH------------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHH
T ss_pred -----------eeEEEEecCCCccEEEEEECCCChh------------HHHHHHHHHHhhCCEEEEEEECCCcCHHHHHH
Confidence 0001112222245789999999642 11236778899999998877654411111122
Q ss_pred HHHH----HH--hCCCCCceEEEeccCCCCCCC
Q 007054 197 MKLA----RE--VDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~----~~--~~~~~~rti~VltK~D~~~~~ 223 (620)
.... .. ....+.++++|+||+|+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 99 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 2221 11 234468999999999998654
No 105
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.22 E-value=7.3e-11 Score=123.86 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...++|+++|.+|+|||||+|+|+|..+...+...+|..+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~------------------------------------- 207 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG------------------------------------- 207 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE-------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEE-------------------------------------
Confidence 3678999999999999999999999863111112222222000
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc---hhc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIA 192 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~---d~~ 192 (620)
.+.. ....+.++||||+....... .. ......+..+...+|+++++++..+. ++.
T Consensus 208 -----------------~~~~-~~~~~~l~Dt~G~~~~~~~~-~~---~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 208 -----------------QFED-GYFRYQIIDTPGLLDRPISE-RN---EIEKQAILALRYLGNLIIYIFDPSEHCGFPLE 265 (357)
T ss_dssp -----------------EEEE-TTEEEEEEECTTTSSSCSTT-SC---HHHHHHHHGGGGTCSEEEEEECTTCTTSSCHH
T ss_pred -----------------EEEe-cCceEEEEeCCCccccchhh-hh---HHHHHHHHHHHhcCCEEEEEEeCCccccCCHH
Confidence 0111 13468999999987643211 11 11123344555678988777664432 222
Q ss_pred c-hHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 193 T-SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 193 ~-~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
. ..++..+....+ +.++|+|+||+|+.+.
T Consensus 266 ~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 266 EQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 2 223333333333 7899999999999764
No 106
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=4e-11 Score=113.38 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+. . ..| +
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-----~~~-------t--------------------------------- 47 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H-----TSP-------T--------------------------------- 47 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E-----EEC-------C---------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c-----CcC-------C---------------------------------
Confidence 3469999999999999999999987651 1 011 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.++... .+.+ +...+.++||||... ...+...|++.+|++|++++..+.. .-...
T Consensus 48 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 102 (187)
T 1zj6_A 48 ------IGSNVE--EIVI---NNTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRE-RISVT 102 (187)
T ss_dssp ------SCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTT-THHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHH-HHHHH
Confidence 011111 1111 236789999999743 1334567889999998877654432 11222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCCCCCCCC--cHHHHHhCC-ccccCCCeeEEeeCChhhhhccCC
Q 007054 197 MKLAREV-D---PTGERTFGVLTKLDLMDKGT--NALDVLEGR-SYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 197 l~l~~~~-~---~~~~rti~VltK~D~~~~~~--~~~~~l~~~-~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
......+ . ..+.++++|+||+|+.+... +..+.+... ....+..|+.+++.++.++++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 170 (187)
T 1zj6_A 103 REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 170 (187)
T ss_dssp HHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHH
Confidence 2222222 2 35789999999999986432 122222111 111223455566655555544333
No 107
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.22 E-value=5.5e-12 Score=119.18 Aligned_cols=119 Identities=21% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+++|++|+|||||+|+|+|..+.+.....+|..+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 44 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK----------------------------------------- 44 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccc-----------------------------------------
Confidence 346999999999999999999999764221111111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~ 194 (620)
....+.. +...+.++||||....... ...+.+...|+. .+++++++++..+ + .
T Consensus 45 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~v~d~~~--~--~ 99 (188)
T 2wjg_A 45 -------------KEGEFEY-NGEKFKVVDLPGVYSLTAN-------SIDEIIARDYIINEKPDLVVNIVDATA--L--E 99 (188)
T ss_dssp -------------EEEEEEE-TTEEEEEEECCCCSCCSSS-------SHHHHHHHHHHHHHCCSEEEEEEEGGG--H--H
T ss_pred -------------eEEEEEe-CCcEEEEEECCCcCccccc-------cHHHHHHHHHHhccCCCEEEEEecchh--H--H
Confidence 0001111 1356899999998764221 112334555664 5888877665433 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
....+...+...+.++++|+||+|+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 223344444446789999999999864
No 108
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=1.9e-11 Score=116.04 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+......+ .. ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~--~~------------------------------------- 53 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VD--FK------------------------------------- 53 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EE--EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eE--EE-------------------------------------
Confidence 345999999999999999999999875222111111 00 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. .....
T Consensus 54 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 106 (195)
T 1x3s_A 54 ------------VKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYDVTRRD-TFVKL 106 (195)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEETTCHH-HHHTH
T ss_pred ------------EEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECcCHH-HHHHH
Confidence 000111 111246889999996432 233567889999998876554322 11222
Q ss_pred HHHHHHhC----CCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHH
Q 007054 197 MKLAREVD----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (620)
Q Consensus 197 l~l~~~~~----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~ 259 (620)
..+...+. ..+.++++|+||+|+.+..-...+. .......+..|+.+.+..+.++++.+..+
T Consensus 107 ~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 107 DNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEG-LKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp HHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHH-HHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHH-HHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 22333333 2467899999999996433221111 11111223456666666666655544443
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.21 E-value=7.1e-12 Score=118.69 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|++|+|||||+|+|++..+ +. ..|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~------~~~----------------------------------------- 52 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-VT------TVP----------------------------------------- 52 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-EE------ECS-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CC------cCC-----------------------------------------
Confidence 456999999999999999999988764 11 111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+.++... .+.+ +...+.++||||..... .+...|++.+|++|++++..+.. .-...
T Consensus 53 -----t~~~~~~--~~~~---~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 108 (189)
T 2x77_A 53 -----TVGVNLE--TLQY---KNISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDSTDRD-RMGVA 108 (189)
T ss_dssp -----STTCCEE--EEEE---TTEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEETTCCT-THHHH
T ss_pred -----CCceEEE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeCCCHH-HHHHH
Confidence 0001100 1111 24578999999975422 12345788999998877654431 11222
Q ss_pred HHHHHH----hCCCCCceEEEeccCCCCCCC
Q 007054 197 MKLARE----VDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~~~----~~~~~~rti~VltK~D~~~~~ 223 (620)
...... ....+.++++|+||+|+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 139 (189)
T 2x77_A 109 KHELYALLDEDELRKSLLLIFANKQDLPDAA 139 (189)
T ss_dssp HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence 222222 223478999999999997653
No 110
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.20 E-value=5.4e-11 Score=113.65 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=58.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc-chHHHHHHHHhCC-CCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDP-TGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~-~~~~l~l~~~~~~-~~~rti~VltK 216 (620)
..+.++||||..... ..+...|++.+|++|++++..+.. +. ...++..+....+ .+.++|+|.||
T Consensus 72 ~~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 357789999975310 125566888999998877654321 11 1223333333332 46899999999
Q ss_pred CCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
+|+.+......+.........+..|+.+++..+.++++.+.
T Consensus 140 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred hhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence 99975432111111111112234567776666655554443
No 111
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.19 E-value=1.3e-12 Score=125.11 Aligned_cols=148 Identities=14% Similarity=0.209 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+........|.-.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 70 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 70 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-----------------------------------------
Confidence 456999999999999999999999875221111111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
. ...+.+ ......+.|+||||..... .+...|++.+|++|++++..+..- ...
T Consensus 71 ---------~--~~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 71 ---------K--IRTIEL-DGKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp ---------E--EEEEEE-TTEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred ---------E--EEEEEE-CCEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 0 000111 1112368999999954321 223457889999988665444221 012
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC----cHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT----NALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
.++..+....+.+.++++|+||+|+.+... +...+. ...+..|+.+++..+.++++
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA----DSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH----HTTTCCBCCCCC---HHHHH
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH----HHcCCeEEEEECCCCCCHHH
Confidence 233344444455789999999999975432 112221 12345566666666665544
No 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=3.4e-11 Score=114.69 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+ ... .|... ... .
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~t~~~-~~~--~---------------------------------- 47 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYI-PTIED-TYR--Q---------------------------------- 47 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTS-CCCCE-EEE--E----------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-ccc-Ccccc-cee--E----------------------------------
Confidence 34699999999999999999999876521 111 11000 000 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-h
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~ 194 (620)
.+ ........+.|+||||... ...+...|+..+|++|++++..+.. +.. .
T Consensus 48 --------------~~-~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (199)
T 2gf0_A 48 --------------VI-SCDKSVCTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVFSVTSKQSLEELG 99 (199)
T ss_dssp --------------EE-EETTEEEEEEEEECCGGGS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTH
T ss_pred --------------EE-EECCEEEEEEEEeCCChHH-------------hHHHHHHhhccCCEEEEEEECcCHHHHHHHH
Confidence 00 0111123688999999543 1355667888999998877654321 111 1
Q ss_pred HHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccC
Q 007054 195 DAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (620)
Q Consensus 195 ~~l~l~~~~~~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~ 256 (620)
.++..+..+.. .+.++++|+||+|+.+....... ........+..|+.+.+..+.++++.+
T Consensus 100 ~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 100 PIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTRE-AQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHH-HHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHH-HHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 23333334322 35789999999999864322111 111111233456666666655554433
No 113
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.18 E-value=3.8e-11 Score=112.94 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+ . .. .|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~----~~--~~----------------------------------------- 51 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-V----HT--SP----------------------------------------- 51 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-E----EE--EC-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-C----cc--CC-----------------------------------------
Confidence 456999999999999999999999865 1 00 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+.++... .+.+ +...+.|+||||.... ..+...|++.+|++|++++..+.. .-...
T Consensus 52 -----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~ 107 (181)
T 2h17_A 52 -----TIGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRE-RISVT 107 (181)
T ss_dssp -----CSSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCTT-THHHH
T ss_pred -----cCceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 0011111 1122 2367899999997442 234567899999998877654431 12222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCCCCCC
Q 007054 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~-~---~~~~rti~VltK~D~~~~ 222 (620)
......+ . ..+.++++|+||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 2222222 2 357899999999999764
No 114
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.2e-11 Score=120.73 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|++|+|||||+|+|++..+.+......+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 47 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG-------------------------------------------- 47 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------------------------------------------
Confidence 456999999999999999999999875221111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~-- 194 (620)
..+. ...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+. ....
T Consensus 48 ------~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~D~~~~-~s~~~~ 104 (223)
T 3cpj_B 48 ------VEFA--TRTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVYDISKS-SSYENC 104 (223)
T ss_dssp ------CSEE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEEC-CCH-HHHHHH
T ss_pred ------ceeE--EEEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEEeCCCH-HHHHHH
Confidence 0000 001111 111246899999995432 22345688999999887654432 1112
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 -~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+......+.++++|+||+|+.+.
T Consensus 105 ~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 105 NHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp HHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 2334444444557899999999999753
No 115
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.17 E-value=6.9e-11 Score=118.53 Aligned_cols=125 Identities=17% Similarity=0.205 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccC-cccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
.-.+|+|+|..|+|||||+|+|+|..+...+. ..+|..+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 76 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM-------------------------------------- 76 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEE--------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEE--------------------------------------
Confidence 45699999999999999999999987532221 112222111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcc
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIAT 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~ 193 (620)
..+. .+...++||||||+.+.... .+...+.+..++. .+|++++++......+..
T Consensus 77 ----------------~~~~-~~~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~ 133 (262)
T 3def_A 77 ----------------VSRT-MGGFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDE 133 (262)
T ss_dssp ----------------EEEE-ETTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCH
T ss_pred ----------------EEEE-ECCeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCH
Confidence 1111 12347899999998764321 2333444555553 467776654322222322
Q ss_pred h--HHHHHHHHhCCC--CCceEEEeccCCCCCC
Q 007054 194 S--DAMKLAREVDPT--GERTFGVLTKLDLMDK 222 (620)
Q Consensus 194 ~--~~l~l~~~~~~~--~~rti~VltK~D~~~~ 222 (620)
. ..++.++..... ..++++|+||+|+.+.
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 344444443222 2489999999999754
No 116
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.5e-11 Score=126.99 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
-.++|++||.||+|||||+|+|+|......+...||+-|..-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~------------------------------------ 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI------------------------------------ 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE------------------------------------
Confidence 34699999999999999999999998766677788887732211
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.. ....++|+||||+...+..+ ...-+.+.+.++.+|+|+++| +++.++...+.
T Consensus 115 ------------------~~-~~~~i~l~D~pGl~~~a~~~------~~~g~~~l~~i~~ad~il~vv-D~~~p~~~~~~ 168 (376)
T 4a9a_A 115 ------------------RY-KGAKIQMLDLPGIIDGAKDG------RGRGKQVIAVARTCNLLFIIL-DVNKPLHHKQI 168 (376)
T ss_dssp ------------------EE-TTEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEEEE-ETTSHHHHHHH
T ss_pred ------------------Ee-CCcEEEEEeCCCccCCchhh------hHHHHHHHHHHHhcCcccccc-ccCccHHHHHH
Confidence 11 12468899999998755432 222344566788899887655 45444322222
Q ss_pred H-HHHHHhC--CCCCceEEEeccCCCC
Q 007054 197 M-KLAREVD--PTGERTFGVLTKLDLM 220 (620)
Q Consensus 197 l-~l~~~~~--~~~~rti~VltK~D~~ 220 (620)
+ .-+..++ -...+.++|+||.|.-
T Consensus 169 i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 169 IEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1 1122222 1346789999999963
No 117
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.17 E-value=3.3e-11 Score=115.23 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
....+|+|+|.+|+|||||+|++++..+ +.....++......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~------------------------------------- 59 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA------------------------------------- 59 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE-------------------------------------
Confidence 3556999999999999999999999864 32222222111000
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cc-
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT- 193 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~- 193 (620)
.+.+ ......+.|+||||..... .+...|+.++|++|++++..+..- ..
T Consensus 60 ---------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 60 ---------------VVSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp ---------------EEEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred ---------------EEEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 0011 1112357799999975421 224468899999988776544321 11
Q ss_pred -hHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 194 -~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..++..+....+ +.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 111 SEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 123333444444 6899999999999753
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.17 E-value=1.1e-10 Score=111.26 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|+.|+|||||++.++|. +.+. .|.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~----~~~------------------------------------------- 50 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPN----ETL------------------------------------------- 50 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGG----GGG-------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCc----cee-------------------------------------------
Confidence 5679999999999999999999986 3221 110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHH---HHhhcCCCeEEEEeccCCch-hc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV---RSYVEKPNSVILAISPANQD-IA 192 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~---~~yi~~~~~iil~V~~a~~d-~~ 192 (620)
+..+....+...+.+.....+.|+||||..... .+. ..|++.+|++|++++..+.- -.
T Consensus 51 -----~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 112 (196)
T 3llu_A 51 -----FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIYVIDAQDDYMEA 112 (196)
T ss_dssp -----GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEEEEETTSCCHHH
T ss_pred -----eeccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEEEEECCCchHHH
Confidence 011222233333434455789999999964421 112 56888999998877655430 11
Q ss_pred chHHHHHHHHh--CCCCCceEEEeccCCCCCC
Q 007054 193 TSDAMKLAREV--DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 193 ~~~~l~l~~~~--~~~~~rti~VltK~D~~~~ 222 (620)
......+...+ ...+.++++|.||+|+.+.
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 12222333333 2347899999999999763
No 119
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.16 E-value=1.5e-10 Score=109.85 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc-chH----HHHHHHHh--CCCCCceEE
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSD----AMKLAREV--DPTGERTFG 212 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~-~~~----~l~l~~~~--~~~~~rti~ 212 (620)
..+.|+||||.... ..+...|++.+|++|++++....... +.+ ...+...+ ...+.++++
T Consensus 74 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 74 TRFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred eEEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 36889999996431 34566799999999887765421100 111 12233333 235789999
Q ss_pred EeccCCCCCC
Q 007054 213 VLTKLDLMDK 222 (620)
Q Consensus 213 VltK~D~~~~ 222 (620)
|+||+|+.+.
T Consensus 141 v~NK~Dl~~~ 150 (198)
T 3t1o_A 141 QVNKRDLPDA 150 (198)
T ss_dssp EEECTTSTTC
T ss_pred EEEchhcccc
Confidence 9999999764
No 120
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.16 E-value=2.5e-11 Score=114.01 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+.+. ..|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t-------------------------------------------- 49 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTT---KPT-------------------------------------------- 49 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEE---CSS--------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCcc---CCc--------------------------------------------
Confidence 356999999999999999999998754100 000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.++... .+.+ +...+.++||||.... ..+...|++.+|++|++++..+. ..-...
T Consensus 50 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~ 104 (183)
T 1moz_A 50 ------IGFNVE--TLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVDSTDK-DRMSTA 104 (183)
T ss_dssp ------TTCCEE--EEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEETTCT-TTHHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 011111 1111 2367899999997542 22345688899999887765432 112222
Q ss_pred HHHHHHhC----CCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVD----PTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~----~~~~rti~VltK~D~~~~ 222 (620)
......+. ..+.++++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 105 SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 23333332 357899999999999764
No 121
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.16 E-value=2.4e-10 Score=107.61 Aligned_cols=115 Identities=20% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..++|+++|++|+|||||+++|++..+ + .. .| +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~----~~--~~-------t--------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-S----HI--TP-------T--------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-E----EE--EE-------E---------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-C----cc--cC-------c---------------------------------
Confidence 457999999999999999999998754 1 00 11 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.++... .+.+ +...+.++||||... ...+...|++.+|++|++++..+.. .-...
T Consensus 48 ------~g~~~~--~~~~---~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~ 102 (181)
T 1fzq_A 48 ------QGFNIK--SVQS---QGFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSADRK-RFEET 102 (181)
T ss_dssp ------TTEEEE--EEEE---TTEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTCGG-GHHHH
T ss_pred ------CCeEEE--EEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcCHH-HHHHH
Confidence 001000 1111 135789999999643 2456678999999998877654422 11122
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCC
Q 007054 197 MKLAREV----DPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~~~~----~~~~~rti~VltK~D~~~~~ 223 (620)
......+ ...+.++++|+||+|+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 2222222 23568999999999998653
No 122
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.15 E-value=2.4e-11 Score=116.46 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
-.+|+|+|.+|+|||||+|++++..+ +.....++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------ 61 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFEN------------------------------------------ 61 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccce------------------------------------------
Confidence 34899999999999999999999875 32211111000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--h
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~ 194 (620)
+. ..+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +.. .
T Consensus 62 -------~~---~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (201)
T 2gco_A 62 -------YI---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117 (201)
T ss_dssp -------CE---EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------EE---EEEEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 00 01111 111246889999995431 233456889999998876544321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..++...+ +.++++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 118 KWTPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp THHHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 23444444433 6899999999999864
No 123
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.15 E-value=2.8e-11 Score=113.74 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|.+|+|||||++++++..+ +.....++.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 43 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYS---------------------------------------- 43 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEE----------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeE----------------------------------------
Confidence 35899999999999999999998765 2221111110000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch--
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-- 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~-- 194 (620)
..+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +...
T Consensus 44 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 44 ------------ANVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRA 97 (186)
T ss_dssp ------------EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence 00011 111235779999997542 234456889999998877654422 2111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..+....+ +.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 98 KWYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp THHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEeEccccccc
Confidence 23344444444 6899999999999864
No 124
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=114.45 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=81.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|++++..+ +.....++...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~------------------------------------------- 57 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDT------------------------------------------- 57 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEE-------------------------------------------
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccce-------------------------------------------
Confidence 4899999999999999999998875 32221111100
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA 196 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~ 196 (620)
+ ...+.+ ......+.|+||||..... .+ ..|++.+|++|++++..+.. +.. ..+
T Consensus 58 ------~---~~~~~~-~~~~~~l~i~Dt~G~~~~~-------------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 113 (187)
T 3c5c_A 58 ------Y---SSEETV-DHQPVHLRVMDTADLDTPR-------------NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSY 113 (187)
T ss_dssp ------E---EEEEEE-TTEEEEEEEEECCC---CC-------------CT-HHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred ------e---eEEEEE-CCEEEEEEEEECCCCCcch-------------hH-HHHHhhCCEEEEEEECCCHHHHHHHHHH
Confidence 0 000011 1112467899999964311 11 35888999998877654321 111 112
Q ss_pred HHHHHHhC---CCCCceEEEeccCCCCCCCCcHHHHHhCCccccCCCeeEEee-CChhhhhccCC
Q 007054 197 MKLAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVN-RSQADINRNID 257 (620)
Q Consensus 197 l~l~~~~~---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~v~~-~s~~~~~~~~~ 257 (620)
+..+.... ..+.++++|+||+|+.+......+.........+..|+.+++ ..+.++++.+.
T Consensus 114 ~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 114 LELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHH
Confidence 22222221 246899999999999753321111111111223456666666 56666554443
No 125
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=2.4e-11 Score=117.08 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=70.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|++..+ +.....++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------- 61 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFEN------------------------------------------- 61 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-C-------CCE-------------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccce-------------------------------------------
Confidence 5899999999999999999999875 22111111000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~ 195 (620)
+. ..+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +.. ..
T Consensus 62 ------~~---~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 118 (207)
T 2fv8_A 62 ------YV---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEK 118 (207)
T ss_dssp ------EE---EEEEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHT
T ss_pred ------EE---EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 00111 111246889999996542 233456889999998876654422 111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
++..++...+ +.++++|+||+|+.+.
T Consensus 119 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 119 WVPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 3344444433 6899999999999754
No 126
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.13 E-value=5.3e-11 Score=113.32 Aligned_cols=114 Identities=15% Similarity=0.238 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-.+|+|+|++|+|||||+|+|++..+ +. ...|..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~--~~~t~~------------------------------------------ 62 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIG------------------------------------------ 62 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE--EEEETT------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc--cCCcCc------------------------------------------
Confidence 345899999999999999999998765 21 011111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+.. .. +.. ....+.++||||... ...+...|++.+|++|++++..+.. .-...
T Consensus 63 --------~~~--~~--~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~-s~~~~ 115 (192)
T 2b6h_A 63 --------FNV--ET--VEY-KNICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RVQES 115 (192)
T ss_dssp --------EEE--EE--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGG-GHHHH
T ss_pred --------eeE--EE--EEE-CCEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 000 00 111 235789999999743 1334567889999998877654332 11222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREV----DPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~----~~~~~rti~VltK~D~~~~ 222 (620)
......+ ...+.++++|+||+|+.+.
T Consensus 116 ~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 116 ADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 2222222 2246899999999999764
No 127
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=5.1e-11 Score=113.23 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|.+|+|||||+|+|++..+ +.....++.....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 56 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYA---------------------------------------- 56 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeE----------------------------------------
Confidence 35999999999999999999998864 3222222111100
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch--
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-- 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~-- 194 (620)
..+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +...
T Consensus 57 ------------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (194)
T 2atx_A 57 ------------VSVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKE 110 (194)
T ss_dssp ------------EEEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 00111 111246789999997542 234456889999998877654432 2111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..++...+ +.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 111 EWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp THHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 23344444433 6899999999999864
No 128
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.13 E-value=2.5e-11 Score=115.46 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 62 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------------------------------- 62 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE--------------------------------------
Confidence 345899999999999999999999875 32222111110000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cc--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~-- 193 (620)
.+. .......+.|+||||.... ..+...|++.+|++|++++..+..- ..
T Consensus 63 --------------~~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 114 (194)
T 3reg_A 63 --------------VMK-YKNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNNRTSFDNIS 114 (194)
T ss_dssp --------------EEE-ETTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEE-ECCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCCHHHHHHHH
Confidence 000 1111235789999995331 3445678999999988776544211 11
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCCccccCCC-eeEEeeCChhhhhccC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHP-WVGIVNRSQADINRNI 256 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~lg-~~~v~~~s~~~~~~~~ 256 (620)
..++...+... .+.++++|+||+|+.+.... ..+.........+.. |+.+.+.++.++++.+
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence 22333444433 25899999999999864211 111111111122333 6666666555554433
No 129
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=116.30 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=58.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|+|.+|+|||||+|+|++..+ +.....++....
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~------------------------------------------ 71 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERY------------------------------------------ 71 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEE------------------------------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeE------------------------------------------
Confidence 4899999999999999999999765 322211110000
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--hH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~~ 195 (620)
...+.+ ......+.|+||||... ...+...|++.+|++|++++..+.. +.. ..
T Consensus 72 ----------~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 127 (214)
T 2j1l_A 72 ----------MVNLQV-KGKPVHLHIWDTAGQDD-------------YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNR 127 (214)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHT
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCchh-------------hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 000111 11123688999999532 2445567889999998877654321 111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
++..++...+ +.++++|+||+|+.+.
T Consensus 128 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 128 WYPEVNHFCK-KVPIIVVGCKTDLRKD 153 (214)
T ss_dssp HHHHHHHHCS-SCCEEEEEECGGGGSC
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhhcc
Confidence 3333444433 6899999999999864
No 130
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.12 E-value=2.4e-10 Score=108.59 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|++|+|||||+|++++..+ +. -..|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~-~~--~~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL-AT--LQPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC-CC--CCCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-Cc--cccCCCCC----------------------------------------
Confidence 345999999999999999999998765 21 11111110
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
.-.+.+ . ...+.++||||.... +.+...|++.+|++|++++..+.. .-...
T Consensus 59 ------------~~~~~~--~-~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 109 (190)
T 1m2o_B 59 ------------SEELAI--G-NIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPE-RFDEA 109 (190)
T ss_dssp ------------EEEEEE--T-TEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGG-GHHHH
T ss_pred ------------eEEEEE--C-CEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChH-HHHHH
Confidence 001111 1 257899999997542 223456889999998877655432 11122
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCC
Q 007054 197 MKLAREV----DPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 197 l~l~~~~----~~~~~rti~VltK~D~~~ 221 (620)
......+ ...+.++++|+||+|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 2222222 235789999999999976
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.11 E-value=4e-11 Score=129.40 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCccc-CcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
..++|++||++|+|||||+|+|+|.....++ ...+|+-|
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~---------------------------------------- 218 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP---------------------------------------- 218 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC----------------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCc----------------------------------------
Confidence 4579999999999999999999998642111 11122111
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~ 195 (620)
. ...+.+ ++..+.++||||+.+..... ++.........+..++..+|.++++++. ......+
T Consensus 219 ----------~--~~~i~~---~g~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vllv~d~-~~~~~~~- 280 (439)
T 1mky_A 219 ----------V--DDEVFI---DGRKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADVVVIVLDA-TQGITRQ- 280 (439)
T ss_dssp ----------C--CEEEEE---TTEEEEESSCSCC------------CCSCCHHHHHHHHHCSEEEEEEET-TTCCCHH-
T ss_pred ----------e--EEEEEE---CCEEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCEEEEEEeC-CCCCCHH-
Confidence 0 001112 12367899999985422110 0000000001234678889988776544 3333222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 196 ~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
...++..+...+.++++|+||+|+.+..
T Consensus 281 ~~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 281 DQRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHHHHcCCCEEEEEECccCCCch
Confidence 3445555555689999999999998643
No 132
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.10 E-value=1.6e-10 Score=110.56 Aligned_cols=113 Identities=15% Similarity=0.242 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+++|++|+|||||+|+|++..+ +. -..|..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 59 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP----------------------------------------- 59 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc-----------------------------------------
Confidence 345899999999999999999998764 11 0011111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
. .-.+.+. ...+.++||||.... +.+...|++.+|++|++++..+.+ .-...
T Consensus 60 ---------~--~~~~~~~---~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~-s~~~~ 111 (198)
T 1f6b_A 60 ---------T--SEELTIA---GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHE-RLLES 111 (198)
T ss_dssp ---------S--CEEEEET---TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGG-GHHHH
T ss_pred ---------e--eEEEEEC---CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHH-HHHHH
Confidence 0 0111121 257899999995431 234567889999998877654432 11112
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCC
Q 007054 197 MKLAREV----DPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 197 l~l~~~~----~~~~~rti~VltK~D~~~ 221 (620)
......+ ...+.|+++|+||+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 1222222 235789999999999975
No 133
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=1.5e-11 Score=130.36 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEE
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~ 77 (620)
+|++||.+|+|||||+|+|+|..........||+-|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 79999999999999999999987323344457776644
No 134
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.09 E-value=2.6e-11 Score=113.64 Aligned_cols=118 Identities=24% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|++|+|||||+|++++..+ +.....++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~------------------------------------------ 43 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFD------------------------------------------ 43 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeee------------------------------------------
Confidence 356999999999999999999998764 2221111100
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-- 193 (620)
.+.. .+ .+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +..
T Consensus 44 -------~~~~-~~--~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (182)
T 3bwd_D 44 -------NFSA-NV--VV-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVS 99 (182)
T ss_dssp --------CBC-CC--C--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------eEEE-EE--EE-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 0000 00 01 112346789999996432 234557889999998877654422 111
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..++..++...+ +.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 100 KKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 123344444444 6899999999998754
No 135
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.09 E-value=1.8e-10 Score=107.61 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.+|+|+|++|+|||||+|++++..+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4899999999999999999999876
No 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.08 E-value=5.1e-11 Score=115.00 Aligned_cols=117 Identities=22% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|++|+|||||++++++..+ +.....++....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~----------------------------------------- 46 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF----------------------------------------- 46 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeE-----------------------------------------
Confidence 45899999999999999999998764 322211111110
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--h
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~ 194 (620)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +.. .
T Consensus 47 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 101 (212)
T 2j0v_A 47 -----------SANVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISKASYENVLK 101 (212)
T ss_dssp -----------EEEEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 000111 112246889999997542 123456889999998877654422 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..++...+ +.++++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 102 KWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 23444444444 6899999999998754
No 137
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.08 E-value=1.3e-10 Score=112.70 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||+++|++..+ +.....++....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 64 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENY---------------------------------------- 64 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEE----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeE----------------------------------------
Confidence 456999999999999999999998875 222111110000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hc--c
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA--T 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~--~ 193 (620)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +. .
T Consensus 65 ------------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 65 ------------TACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 118 (214)
T ss_dssp ------------EEEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHH
Confidence 000011 111246889999996432 234556899999998877655432 11 1
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..++..++...+ +.++++|.||+|+.+.
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 334455555543 6899999999999753
No 138
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.66 E-value=1.3e-11 Score=118.60 Aligned_cols=69 Identities=23% Similarity=0.222 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch--HHHHHHHHhCCCCCceEEEecc
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~--~~l~l~~~~~~~~~rti~VltK 216 (620)
..+.|+||||... ...+...|++.+|++|++++..+.. +... .++..++...+ +.++++|+||
T Consensus 78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK 143 (204)
T 3th5_A 78 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 143 (204)
Confidence 4677999999543 2455667889999998876543321 1111 12222222222 6889999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (204)
T 3th5_A 144 LDLRDD 149 (204)
Confidence 999864
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.07 E-value=1.6e-10 Score=108.97 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|++|+|||||+|+|++..+ +.... .|..... .
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~~~-~-------------------------------------- 45 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENY-T-------------------------------------- 45 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEE-E--------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeE-E--------------------------------------
Confidence 45899999999999999999999865 32211 1111100 0
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--h
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~--~ 194 (620)
..+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +.. .
T Consensus 46 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (184)
T 1m7b_A 46 ------------ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLK 99 (184)
T ss_dssp ------------EEEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCHHHHHHHHH
Confidence 00001 111246889999996431 223445889999998877654321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
.++..++...+ +.++++|.||+|+.+
T Consensus 100 ~~~~~i~~~~~-~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 100 KWKGEIQEFCP-NTKMLLVGCKSDLRT 125 (184)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHCC-CCCEEEEEEcchhhc
Confidence 22333444433 689999999999975
No 140
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.07 E-value=3.4e-11 Score=115.85 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-.+|+|+|.+|+|||||++++++..+ +.....++......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 69 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA-------------------------------------- 69 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEE--------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEE--------------------------------------
Confidence 345999999999999999999997755 22211111100000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cc--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~-- 193 (620)
.+.+ ......+.|+||||.... ..+...|++.+|++|++++..+..- ..
T Consensus 70 --------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 70 --------------NVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVR 121 (204)
T ss_dssp --------------EEEC-C-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 0000 111235679999997432 2345568899999988776544221 11
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
..++..++... .+.++++|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 12333444443 368999999999998643
No 141
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.06 E-value=2.6e-10 Score=110.78 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=63.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-h-cchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~-~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||+|--. ...+...|++.++++|++.+..+.. + ....++..++...+...++|+|.||+
T Consensus 62 v~l~iwDtaGqe~-------------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLER-------------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTTT-------------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred EEEEEEECCCchh-------------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 4678999999533 2456778999999998876554421 1 11234444555445568999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
|+.+......+.........+..|+.+++.++.++++.+.
T Consensus 129 Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred chHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 9876432111111111223345677777776666554433
No 142
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.06 E-value=3.3e-10 Score=106.98 Aligned_cols=147 Identities=12% Similarity=0.085 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
..+|+|+|++|+|||||+|++++..+ +.... .|.. .+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~-~t~~----~~~------------------------------------ 57 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTY-VQEES-PEGG----RFK------------------------------------ 57 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSC-CCCCC-TTCE----EEE------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CCcc----eEE------------------------------------
Confidence 34899999999999999999998875 22111 1100 000
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH--
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~-- 195 (620)
..+.+. .....+.|+||||... .. |++.+|++|++++..+.. .-+.
T Consensus 58 ------------~~~~~~-~~~~~l~i~Dt~G~~~---------~~---------~~~~~~~~i~v~d~~~~~-s~~~~~ 105 (184)
T 3ihw_A 58 ------------KEIVVD-GQSYLLLIRDEGGPPE---------LQ---------FAAWVDAVVFVFSLEDEI-SFQTVY 105 (184)
T ss_dssp ------------EEEEET-TEEEEEEEEECSSSCC---------HH---------HHHHCSEEEEEEETTCHH-HHHHHH
T ss_pred ------------EEEEEC-CEEEEEEEEECCCChh---------hh---------eecCCCEEEEEEECcCHH-HHHHHH
Confidence 001111 1123578899999643 11 778899998877654422 1122
Q ss_pred -HHHHHHHhC-CCCCceEEEeccCCCCCCCCc--HHHHHhCCccccC-CCeeEEeeCChhhhhccCCH
Q 007054 196 -AMKLAREVD-PTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDM 258 (620)
Q Consensus 196 -~l~l~~~~~-~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~-lg~~~v~~~s~~~~~~~~~~ 258 (620)
++..+.... ..+.++++|.||+|+.+.... ..+.........+ ..|+.+++..+.++++.+..
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 106 NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 222233222 146789999999999632211 1111111111222 45677776666665544443
No 143
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=2.2e-10 Score=120.19 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=50.5
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcCC-------------CeEEEEeccCCchhcchHHHHHHHHhCC
Q 007054 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEKP-------------NSVILAISPANQDIATSDAMKLAREVDP 205 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~~-------------~~iil~V~~a~~d~~~~~~l~l~~~~~~ 205 (620)
..++++||||+.+.... ..-..+...+.+....|+..+ ++++++|.++...+... ...+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~-d~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL-DVAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHH-HHHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchh-HHHHHHHhc-
Confidence 36899999999653211 111224444444445666542 45767776655555333 345666665
Q ss_pred CCCceEEEeccCCCCCCCCcH--HHHHhCCccccCCCeeEEeeCChhh
Q 007054 206 TGERTFGVLTKLDLMDKGTNA--LDVLEGRSYRLQHPWVGIVNRSQAD 251 (620)
Q Consensus 206 ~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~lg~~~v~~~s~~~ 251 (620)
.+.++|+|+||+|+....... .+.+.......+..|+.+.+.++.+
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 478999999999998643211 1112212223345566665555444
No 144
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=4.1e-10 Score=109.03 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=54.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc-hhcc-hHHHHHHHHh-CCCCCceEEEeccC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT-SDAMKLAREV-DPTGERTFGVLTKL 217 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~-d~~~-~~~l~l~~~~-~~~~~rti~VltK~ 217 (620)
.+.++||+|... ....+...|.+.++++|++++-.+. .+.. ..+...+... ...+.++|+|.||+
T Consensus 88 ~l~~~Dt~g~~~------------~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 88 TIILLDMWENKG------------ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEECCTTTTH------------HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred EEEEeecCCCcc------------hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 567899999532 1233556678889998887654432 1111 1122222222 23468999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCC
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~ 257 (620)
|+.+......+.........+..|+.+++..+.++++.+.
T Consensus 156 DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred HHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9975322111100000111233456666665555554443
No 145
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.04 E-value=3.3e-10 Score=116.24 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cc-hHHHHHHHHhC--CCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-SDAMKLAREVD--PTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~-~~~l~l~~~~~--~~~~rti~Vl 214 (620)
...+.|+||||.... .......+...|++++|++|++++..+..- .. ..+......+. ..+.++++|+
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 457899999996431 111224567788899999988776554321 11 11122222221 2368999999
Q ss_pred ccCCCCC
Q 007054 215 TKLDLMD 221 (620)
Q Consensus 215 tK~D~~~ 221 (620)
||+|+.+
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999986
No 146
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.04 E-value=2.8e-10 Score=109.58 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|++|+|||||+|+|++..+ +.... .|..... .
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~-~t~~~~~-~------------------------------------- 66 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENY-T------------------------------------- 66 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEE-E-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CccceeE-E-------------------------------------
Confidence 345899999999999999999999875 32211 1111100 0
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc--
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-- 193 (620)
..+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +..
T Consensus 67 -------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~ 119 (205)
T 1gwn_A 67 -------------ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVL 119 (205)
T ss_dssp -------------EEEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 00001 111246889999996432 223456889999998877654422 111
Q ss_pred hHHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 194 ~~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
..++..++...+ +.++++|.||+|+.+
T Consensus 120 ~~~~~~i~~~~~-~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 120 KKWKGEIQEFCP-NTKMLLVGCKSDLRT 146 (205)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHCC-CCCEEEEEechhhcc
Confidence 123333444433 689999999999975
No 147
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.04 E-value=7.1e-10 Score=122.71 Aligned_cols=107 Identities=8% Similarity=0.089 Sum_probs=62.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...+.++||||.... ..+...|++++|++|++++.++ .-....++..++...+ +.++|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V~D~s~-~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLLLDSRT-DSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEEECGGG-GGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEEEeCCC-chhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 457899999994321 1223457788998877765443 3334445555555554 589999999999
Q ss_pred CCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 219 LMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
+.+......+.+.......+..++.+++.++.++++.+....
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~ 203 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLK 203 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHH
Confidence 986543222222222333445688888888877776555443
No 148
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.04 E-value=1.2e-09 Score=105.73 Aligned_cols=116 Identities=22% Similarity=0.393 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...|+|+|+|.+|+|||||+|+|++..+.+. ..+..|+.-.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~------------------------------------ 50 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA------------------------------------ 50 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE------------------------------------
Confidence 3678999999999999999999999875221 1111221000
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC----CCeEEEEeccC-Cc-
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK----PNSVILAISPA-NQ- 189 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~----~~~iil~V~~a-~~- 189 (620)
.+ ....+.++||||.... +.+...|+.. ++++|++++.. +.
T Consensus 51 --------~~------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~ 97 (218)
T 1nrj_B 51 --------DY------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPK 97 (218)
T ss_dssp --------TG------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTT
T ss_pred --------Ee------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChH
Confidence 00 2357899999998542 2333444444 88887776655 21
Q ss_pred hhcc-hHHH-HHHHHh---CCCCCceEEEeccCCCCCCC
Q 007054 190 DIAT-SDAM-KLAREV---DPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 190 d~~~-~~~l-~l~~~~---~~~~~rti~VltK~D~~~~~ 223 (620)
.+.. ..++ .+.... .+.+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 98 KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 1111 1111 111111 34578999999999998654
No 149
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.04 E-value=7.3e-11 Score=114.83 Aligned_cols=105 Identities=11% Similarity=0.106 Sum_probs=60.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-c-chHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~-~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+.|+||||.... ..+...|++.+|++|++++..+..- . ...++..+....+ +.++++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECT
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECC
Confidence 46889999995432 2234568889999988776544211 0 1223333444333 68999999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
|+.+..... + ........+..|+.+++.++.++++.+..+.
T Consensus 130 Dl~~~~~~~-~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 130 DIKDRKVKA-K-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp TSSSCSSCG-G-GCCHHHHHTCEEEECBGGGTBTTTHHHHHHH
T ss_pred ccccccccH-H-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 997644211 1 1111122345667776666666655444433
No 150
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.04 E-value=1.7e-10 Score=119.63 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=67.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhhc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (620)
+|+|+|.+|+|||||+|+|++..+ +.. ..|....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~------------------------------------------- 200 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFN------------------------------------------- 200 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEE-------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceE-------------------------------------------
Confidence 799999999999999999998875 111 1111110
Q ss_pred CCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH---H
Q 007054 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---A 196 (620)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~---~ 196 (620)
.. .+.. ....++|+||||-.. ...+...|++.+|++|++++..+.+--..- .
T Consensus 201 ---------~~--~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 201 ---------VE--TVEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp ---------EE--EEEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred ---------EE--EEec-CcEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 00 0111 235689999999322 234567788999999887765432211111 1
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
..+.......+.++|+|+||+|+.+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc
Confidence 122222222378899999999998654
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.01 E-value=5.9e-11 Score=129.86 Aligned_cols=117 Identities=17% Similarity=0.282 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|.|+|+|++++|||||+++|++..+.....+..|.-.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 468999999999999999999998765322222222111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
... .+..+....++||||||.... ..+...+++.+|.+||+++ ++.+. ....
T Consensus 42 ---------~~~----~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vILVVD-a~dg~-~~qt 93 (537)
T 3izy_P 42 ---------GAF----LVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVILVVA-ADDGV-MKQT 93 (537)
T ss_dssp ---------TSC----CBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCEEECB-SSSCC-CHHH
T ss_pred ---------eEE----EEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEEEEEE-CCCCc-cHHH
Confidence 000 022233457999999995432 2233457788999987665 44333 3334
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
...+..+...+.|+|+|+||+|+.+.
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHHcCCcEEEEEeccccccc
Confidence 44555555667899999999999753
No 152
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.98 E-value=1.1e-09 Score=119.99 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=72.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|+|||.+|+|||||+|+|++..+ +. ...|..+..-
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~---------------------------------------- 359 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVE---------------------------------------- 359 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEE----------------------------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEE----------------------------------------
Confidence 4899999999999999999999874 21 1122222100
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHH
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~ 198 (620)
.+.. ....+.|+||||.... ..+...|++.+|++|++++..+.. .......
T Consensus 360 --------------~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~~~-s~~~~~~ 410 (497)
T 3lvq_E 360 --------------TVTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADRD-RIDEARQ 410 (497)
T ss_dssp --------------EEES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTCGG-GHHHHHH
T ss_pred --------------EEEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcchh-HHHHHHH
Confidence 1112 2357899999995432 334667999999998877655432 1122222
Q ss_pred HHHH----hCCCCCceEEEeccCCCCCCC
Q 007054 199 LARE----VDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 199 l~~~----~~~~~~rti~VltK~D~~~~~ 223 (620)
.... ....+.++|+|+||+|+.+..
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 439 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDAM 439 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSCC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcCC
Confidence 2222 223478999999999997643
No 153
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.97 E-value=4.5e-10 Score=116.07 Aligned_cols=118 Identities=23% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|+|+|.+|+|||||++++++..+ +.....++......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~-------------------------------------- 194 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA-------------------------------------- 194 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEE--------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEE--------------------------------------
Confidence 457999999999999999999998765 22222222111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcch-
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS- 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~- 194 (620)
.+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +...
T Consensus 195 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 195 --------------NVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFHHVR 246 (332)
T ss_dssp --------------EEEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCHHHHHHHH
Confidence 0001 111235679999997542 234556889999998877654422 1111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 -~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
.++..++...+ +.++++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 12334444444 7899999999999754
No 154
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.96 E-value=2.2e-09 Score=114.49 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=46.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--hcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++|+||||..+ ....+..++..+|++||++++.+.. ..+.+.+.+++.+.. .++|+|+||+
T Consensus 75 ~~~~iiDtPGh~~-------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEV-------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGG-------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred ceEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence 4789999999422 2445567788999998877654421 223445555555542 5899999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|+.+..
T Consensus 140 Dl~~~~ 145 (403)
T 3sjy_A 140 DVVSKE 145 (403)
T ss_dssp GGSCHH
T ss_pred cccchH
Confidence 998643
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.7e-09 Score=120.92 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
...+|++||.+|+|||||+|+|++... .+..+.. ..+.......+....++.-+.+....+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i------------~~~~~~~~~~g~~~~~~a~~~d~~~~e-- 226 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL------------RKLQRESETMGKSSFKFAWIMDQTNEE-- 226 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH------------HHHHHHSSCSSSSCCSSSHHHHHHHHH--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH------------HHHHhhhhhccccccceeeeeccchhh--
Confidence 456999999999999999999998743 1111000 000000000011111222223322222
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch------
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD------ 190 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d------ 190 (620)
+..|.+..+ .... +.. ....++||||||..+ ....+..++..+|++||+|+..+..
T Consensus 227 ~~~GiTid~--~~~~--~~~-~~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 227 RERGVTVSI--CTSH--FST-HRANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFD 288 (611)
T ss_dssp HHTTTCCSC--SCCE--EEC-SSCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCC
T ss_pred hhCCeeEee--eeEE--Eec-CCceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccch
Confidence 222322221 1222 222 346899999999743 2445567889999998877654321
Q ss_pred --hcchHHHHHHHHhCCCC-CceEEEeccCCCCC
Q 007054 191 --IATSDAMKLAREVDPTG-ERTFGVLTKLDLMD 221 (620)
Q Consensus 191 --~~~~~~l~l~~~~~~~~-~rti~VltK~D~~~ 221 (620)
..+...+.++.. .+ .++|+|+||+|+.+
T Consensus 289 ~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 289 LDGQTKEHMLLASS---LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TTSHHHHHHHHHHT---TTCCEEEEEEECTTTTT
T ss_pred hhhHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 112233333433 34 45999999999986
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.94 E-value=9.7e-10 Score=119.97 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=50.9
Q ss_pred ccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--------hcchHH
Q 007054 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--------IATSDA 196 (620)
Q Consensus 125 ~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--------~~~~~~ 196 (620)
++.+.....+.. ....++||||||..+ ....+..++..+|++||+++..+.. ..+.+.
T Consensus 97 iTi~~~~~~~~~-~~~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~ 162 (483)
T 3p26_A 97 VTVSICTSHFST-HRANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEH 162 (483)
T ss_dssp SSCCCCEEEEEC-SSCEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHH
T ss_pred cceEeeeEEEec-CCceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHH
Confidence 333333333333 346899999999743 2455667889999998877654421 112233
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+.++..+. ..++|+|+||+|+.+.
T Consensus 163 ~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 163 MLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp HHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred HHHHHHcC--CCcEEEEEECcCcccc
Confidence 44444433 2469999999999863
No 157
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.94 E-value=1.3e-09 Score=118.74 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
...++||||||. +.....+..++..+|++||++++. .+. .+.+.+.+++. .+.+.|+|+||
T Consensus 72 ~~~i~iiDtPGh-------------~~~~~~~~~~~~~aD~~ilVvda~-~g~~~qt~e~l~~~~~---~~ip~IvviNK 134 (482)
T 1wb1_A 72 NYRITLVDAPGH-------------ADLIRAVVSAADIIDLALIVVDAK-EGPKTQTGEHMLILDH---FNIPIIVVITK 134 (482)
T ss_dssp TEEEEECCCSSH-------------HHHHHHHHHHTTSCCEEEEEEETT-TCSCHHHHHHHHHHHH---TTCCBCEEEEC
T ss_pred CEEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEecC-CCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 357999999994 223445567889999998877543 332 23334444444 46788999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|+.+.
T Consensus 135 ~Dl~~~ 140 (482)
T 1wb1_A 135 SDNAGT 140 (482)
T ss_dssp TTSSCH
T ss_pred CCcccc
Confidence 999863
No 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.92 E-value=1.1e-09 Score=104.12 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=40.0
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcc-hHHHHHHHHh-CCCCCceEEEeccC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREV-DPTGERTFGVLTKL 217 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~-~~~l~l~~~~-~~~~~rti~VltK~ 217 (620)
.+.++||+|... +. +.+...|++.++++|++.+..+.+ +.. ..+....... ...+.++|+|.||+
T Consensus 57 ~l~~~Dt~~~~~-----~~-------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKG-----EN-------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcc-----hh-------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 567899999542 10 113345677789887776544321 111 1233333333 34478999999999
Q ss_pred CCCC
Q 007054 218 DLMD 221 (620)
Q Consensus 218 D~~~ 221 (620)
|+.+
T Consensus 125 Dl~~ 128 (192)
T 2cjw_A 125 DLVR 128 (192)
T ss_dssp TCGG
T ss_pred hhhc
Confidence 9874
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.92 E-value=2.8e-09 Score=114.77 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--------cchHHHHHHHHhCCCCCc-
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTGER- 209 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--------~~~~~l~l~~~~~~~~~r- 209 (620)
...++||||||.. .....+..++..+|++||+|++..... .+.+.+.++.. .+.+
T Consensus 94 ~~~~~iiDTPGh~-------------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~ 157 (439)
T 3j2k_7 94 KKHFTILDAPGHK-------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKH 157 (439)
T ss_pred CeEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCe
Confidence 3589999999943 224445567889999988776543221 23344444443 3556
Q ss_pred eEEEeccCCCCCC
Q 007054 210 TFGVLTKLDLMDK 222 (620)
Q Consensus 210 ti~VltK~D~~~~ 222 (620)
+|+|+||+|+.+.
T Consensus 158 iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 158 LIVLINKMDDPTV 170 (439)
T ss_pred EEEEeecCCCccc
Confidence 8999999999643
No 160
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.91 E-value=1.2e-09 Score=103.00 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=41.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--hc-chHHHHHHHHhCCCCCceEEEec
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IA-TSDAMKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--~~-~~~~l~l~~~~~~~~~rti~Vlt 215 (620)
...+.++||||... ...+...|++.+++++++++..+.. +. ...++..+....+ +.++++|.|
T Consensus 55 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~n 120 (184)
T 2zej_A 55 DLVLNVWDFAGREE-------------FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGT 120 (184)
T ss_dssp -CEEEEEEECSHHH-------------HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEE
T ss_pred ceEEEEEecCCCHH-------------HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEE
Confidence 35688999999532 2334556788888887765433321 11 1122322333323 578999999
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|+|+.+.
T Consensus 121 K~Dl~~~ 127 (184)
T 2zej_A 121 HLDVSDE 127 (184)
T ss_dssp CGGGCCH
T ss_pred CCCcccc
Confidence 9999753
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.90 E-value=2.1e-09 Score=102.65 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
...+|+|+|+.|||||||+++|+|..+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999999865
No 162
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.88 E-value=2e-09 Score=118.11 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..+.|+|+|.+|+|||||+|+|++........+.+...- . ... .+.+....+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~---------~-----------~~~------~~~d~~~~e-- 63 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK---------A-----------ARH------ATSDWMELE-- 63 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC------------------------C------CHHHHHHHH--
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc---------c-----------ccc------eecccchhh--
Confidence 467999999999999999999985432110001000000 0 000 011111111
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
...|. .+....+.+. . ....++||||||..+. ...+..|++.+|++|+++++.. .. ....
T Consensus 64 ~~~Gi--Ti~~~~~~~~--~-~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa~~-g~-~~~t 123 (528)
T 3tr5_A 64 KQRGI--SVTTSVMQFP--Y-KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDAAK-GV-EPRT 123 (528)
T ss_dssp HHHCC--SSSSSEEEEE--E-TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTT-CS-CHHH
T ss_pred hcCCe--eEEEeEEEEE--e-CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeCCC-CC-CHHH
Confidence 11231 2222333332 2 3467999999997542 2346788999999988765543 33 3334
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
..+.+.+...+.++|+|+||+|+...
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 45566666678999999999999643
No 163
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.83 E-value=3.4e-08 Score=105.38 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc--hhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~--d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++||||||. +.+......++..+|.+||+++.... ...+.+.+.+++.+. ..++|+|+||+
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECT
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEcc
Confidence 46899999993 22233445667788999887654432 122334455555443 24799999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|+.+..
T Consensus 146 Dl~~~~ 151 (408)
T 1s0u_A 146 DLVDEK 151 (408)
T ss_dssp TSSCTT
T ss_pred CCCCHH
Confidence 998654
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.82 E-value=1.2e-08 Score=108.93 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc--hhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~--d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++||||||. +.........+..+|.+||++++... ...+.+.+.+++.+. ..++|+|+||+
T Consensus 83 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~ 147 (410)
T 1kk1_A 83 RRVSFIDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKI 147 (410)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred cEEEEEECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECc
Confidence 46899999993 22234455667788999887654432 223445555665553 25789999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+.+.
T Consensus 148 Dl~~~ 152 (410)
T 1kk1_A 148 ELVDK 152 (410)
T ss_dssp GGSCH
T ss_pred cCCCH
Confidence 99864
No 165
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.82 E-value=4.9e-09 Score=109.38 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999984
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.80 E-value=1.1e-09 Score=118.83 Aligned_cols=113 Identities=21% Similarity=0.335 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..|.|+|+|+.++|||||+++|.+..+.....+..|...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 568999999999999999999997654211111111000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~ 194 (620)
+ .. .+. .+...++|+||||..... .+...++..+|.+||+++. +.+. .+.
T Consensus 42 ---~------~~----~v~-~~~~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVda-~~g~~~qT~ 93 (501)
T 1zo1_I 42 ---G------AY----HVE-TENGMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVAA-DDGVMPQTI 93 (501)
T ss_dssp ---S------CC----CCC-TTSSCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEET-TTBSCTTTH
T ss_pred ---E------EE----EEE-ECCEEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEeec-ccCccHHHH
Confidence 0 00 011 123578999999965422 1223567889999887754 3322 233
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
+.+..++. .+.|+|+|+||+|+.+
T Consensus 94 e~l~~~~~---~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 94 EAIQHAKA---AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp HHHHHHHH---TTCCEEEEEECSSSST
T ss_pred HHHHHHHh---cCceEEEEEEeccccc
Confidence 44444443 4678999999999975
No 167
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.79 E-value=7.4e-09 Score=114.78 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.++.|+++|+.++|||||+++|++..- ..++.. +. . .+.|. .. .+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg------~i~~~~--~~--~-----------------~~~D~------~~--~E 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTG------AISERE--KR--E-----------------QLLDT------LD--VE 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHT------C----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccC------Cccccc--cc--c-----------------ccccc------ch--hh
Confidence 567999999999999999999986321 111000 00 0 00000 00 00
Q ss_pred hhcCCCCCccCccEEEEEecCCC--CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNV--VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~--~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~ 194 (620)
+..| ..+....+.+....++. ..++||||||..+. ...+..++..+|.+||+|+.. .+...+
T Consensus 50 rerG--ITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVVDa~-~gv~~q 113 (600)
T 2ywe_A 50 RERG--ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLIDAS-QGIEAQ 113 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEEETT-TBCCHH
T ss_pred hccc--ceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEEECC-CCccHH
Confidence 0011 22333344444333222 46889999997542 334567788999998866544 333222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 195 ~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
. ..........+.+.|+|+||+|+...
T Consensus 114 t-~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 114 T-VANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp H-HHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred H-HHHHHHHHHCCCCEEEEEeccCcccc
Confidence 2 22222222347889999999999754
No 168
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.78 E-value=2.4e-08 Score=104.55 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..+.|+++|.+|+|||||+++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999743
No 169
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.77 E-value=8.5e-09 Score=109.55 Aligned_cols=125 Identities=22% Similarity=0.293 Sum_probs=70.0
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (620)
.+.|++||.+||||||||++|+|......+...+|..|..-
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G--------------------------------------- 197 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--------------------------------------- 197 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE---------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee---------------------------------------
Confidence 46799999999999999999999853112222333333100
Q ss_pred hcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc-hHH
Q 007054 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDA 196 (620)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~-~~~ 196 (620)
.+.......++++|+||+......+.. +.. ...+.++.++.++.++..+...+.. +..
T Consensus 198 ---------------~V~~~~~~~~~l~DtpGli~~a~~~~~--L~~----~fl~~~era~~lL~vvDls~~~~~~ls~g 256 (416)
T 1udx_A 198 ---------------VVEVSEEERFTLADIPGIIEGASEGKG--LGL----EFLRHIARTRVLLYVLDAADEPLKTLETL 256 (416)
T ss_dssp ---------------EEECSSSCEEEEEECCCCCCCGGGSCC--SCH----HHHHHHTSSSEEEEEEETTSCHHHHHHHH
T ss_pred ---------------EEEecCcceEEEEeccccccchhhhhh--hhH----HHHHHHHHHHhhhEEeCCccCCHHHHHHH
Confidence 011222356899999999764322110 111 1123456788887766543121111 111
Q ss_pred HHHHHHhCC--CCCceEEEeccCCCCCC
Q 007054 197 MKLAREVDP--TGERTFGVLTKLDLMDK 222 (620)
Q Consensus 197 l~l~~~~~~--~~~rti~VltK~D~~~~ 222 (620)
.+....+.+ ...|.++|+||+|....
T Consensus 257 ~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 257 RKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp HHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 122222221 24788999999999864
No 170
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=9.3e-09 Score=108.91 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=49.1
Q ss_pred CCcEEEeCCCCCccccCC-CCccH----HHHHHHHHHHhhc---------C--CCeEEEEeccCCchhcchHHHHHHHHh
Q 007054 140 VNLTLIDLPGLTKVAVEG-QPDTI----VEDIESMVRSYVE---------K--PNSVILAISPANQDIATSDAMKLAREV 203 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~-q~~~~----~~~~~~~~~~yi~---------~--~~~iil~V~~a~~d~~~~~~l~l~~~~ 203 (620)
+.++++|+||+....... ....+ ...+......+.. . .|++++++.++..++... .+.+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~-Dieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL-DLVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH-HHHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH-HHHHHHHH
Confidence 478999999997532110 00111 2233333444421 1 135677788887777444 46788888
Q ss_pred CCCCCceEEEeccCCCCCCC
Q 007054 204 DPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 204 ~~~~~rti~VltK~D~~~~~ 223 (620)
. .+.++|+|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 689999999999998654
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.77 E-value=1.2e-08 Score=97.94 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=42.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh---cCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV---EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi---~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
.+.++||||+..... +....+.++..+..|+ ...+.+++++. +...... ....+...+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~~-~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLMD-IRHPLKD-LDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCCCH-HHHHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEEE-CCCCCch-hHHHHHHHHHHcCCCeEEEEecc
Confidence 788999999864211 1112234445555565 35666666544 3332211 11223333334567899999999
Q ss_pred CCCCCC
Q 007054 218 DLMDKG 223 (620)
Q Consensus 218 D~~~~~ 223 (620)
|+.+.+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998754
No 172
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.76 E-value=3.8e-09 Score=117.38 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
+.++|+||||..+... +...+++.+|.+||+++.. .++..+ .....+.+...+.|+|+|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~~-------------~~~r~~~~aD~aILVvDa~-~Gv~~q-T~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTT-------------LRKRGGALADLAILIVDIN-EGFKPQ-TQEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTT-------------SBCSSSBSCSEEEEEEETT-TCCCHH-HHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEEECC-CCccHh-HHHHHHHHHHcCCeEEEEeccccc
Confidence 4689999999754321 1235678899998876544 333222 222333333457899999999999
Q ss_pred CC
Q 007054 220 MD 221 (620)
Q Consensus 220 ~~ 221 (620)
..
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 75
No 173
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.76 E-value=8.9e-09 Score=97.69 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
...+|+|+|+.|||||||++.|+|..+
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999999865
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.75 E-value=2e-08 Score=105.41 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc--chHHHHHHHHhCCCCCce-EEEec-
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERT-FGVLT- 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~--~~~~l~l~~~~~~~~~rt-i~Vlt- 215 (620)
..++||||||..+ . ...+..+++.+|.+||+|+ +.+.. +.+.+.+++.. +.+. |+|+|
T Consensus 60 ~~i~iiDtPGh~~------------f-~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~~---~i~~~ivvvNN 121 (370)
T 2elf_A 60 RNMVFVDAHSYPK------------T-LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDLL---GFKHGIIALTR 121 (370)
T ss_dssp SEEEEEECTTTTT------------C-HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHHT---TCCEEEEEECC
T ss_pred eEEEEEECCChHH------------H-HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHHc---CCCeEEEEEEe
Confidence 4699999999643 1 2233456689999988876 33332 33444455443 5566 99999
Q ss_pred cCCC
Q 007054 216 KLDL 219 (620)
Q Consensus 216 K~D~ 219 (620)
|+|+
T Consensus 122 K~Dl 125 (370)
T 2elf_A 122 SDST 125 (370)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9999
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.75 E-value=1.9e-08 Score=108.20 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh--cchHHHHHHHHhCCCCCceEEEec
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~--~~~~~l~l~~~~~~~~~rti~Vlt 215 (620)
....++||||||..+ ....+..++..+|++||+++..+ .. .+.+.+.++.... ..+.|+|+|
T Consensus 102 ~~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~~--~~~iIvviN 165 (434)
T 1zun_B 102 AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLLG--IKHIVVAIN 165 (434)
T ss_dssp SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHTT--CCEEEEEEE
T ss_pred CCceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcC--CCeEEEEEE
Confidence 345799999999542 12334567899999988766443 32 2233445555442 236899999
Q ss_pred cCCCCCC
Q 007054 216 KLDLMDK 222 (620)
Q Consensus 216 K~D~~~~ 222 (620)
|+|+.+.
T Consensus 166 K~Dl~~~ 172 (434)
T 1zun_B 166 KMDLNGF 172 (434)
T ss_dssp CTTTTTS
T ss_pred cCcCCcc
Confidence 9999863
No 176
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=3.5e-08 Score=104.87 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=41.2
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHh-----------hcCCC--eEEEEeccCCchhcchHHHHHHHHhCC
Q 007054 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSY-----------VEKPN--SVILAISPANQDIATSDAMKLAREVDP 205 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~y-----------i~~~~--~iil~V~~a~~d~~~~~~l~l~~~~~~ 205 (620)
+.++++||||+...... .....+.+.+......| +.+++ ++++++.|....+...+ ..+.+.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 47899999998753211 00111222233333334 34444 45555555433443333 456677765
Q ss_pred CCCceEEEeccCCCCCC
Q 007054 206 TGERTFGVLTKLDLMDK 222 (620)
Q Consensus 206 ~~~rti~VltK~D~~~~ 222 (620)
+.++|+|+||+|++.+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.74 E-value=2.4e-08 Score=109.66 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=50.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...++||||||..+. ...+..|+..+|++|+++++.+ ... .....+.+.+...+.++++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~~-g~~-~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAAK-GVE-DRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTT-CSC-HHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCCc-cch-HHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 467999999997542 2345678899999988776544 332 2234456666667889999999999
Q ss_pred CCCCC
Q 007054 219 LMDKG 223 (620)
Q Consensus 219 ~~~~~ 223 (620)
+....
T Consensus 146 l~~~~ 150 (529)
T 2h5e_A 146 RDIRD 150 (529)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97643
No 178
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.73 E-value=7.2e-09 Score=115.07 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchH--HHHHHHHhCCCCCceEEEeccC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD--AMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~--~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++||||||..+. ...+..++..+|.+||+|+.. .....+. .+..+. ..+.+.|+|+||+
T Consensus 71 ~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVVDa~-~gv~~qt~~~~~~~~---~~~ipiIvViNKi 133 (599)
T 3cb4_D 71 YQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVVDAG-QGVEAQTLANCYTAM---EMDLEVVPVLNKI 133 (599)
T ss_dssp EEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEEETT-TCCCTHHHHHHHHHH---HTTCEEEEEEECT
T ss_pred EEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECC-CCCCHHHHHHHHHHH---HCCCCEEEeeecc
Confidence 46899999997542 334667788899998876543 3332332 222332 3468999999999
Q ss_pred CCCCC
Q 007054 218 DLMDK 222 (620)
Q Consensus 218 D~~~~ 222 (620)
|+.+.
T Consensus 134 Dl~~a 138 (599)
T 3cb4_D 134 DLPAA 138 (599)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 99754
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.72 E-value=6.4e-09 Score=112.59 Aligned_cols=144 Identities=20% Similarity=0.261 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCC-cCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHH
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (620)
...+|+++|..++|||||+|+|++.. .++... + .. +.......+..-.++.-+.+....+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-~~----------------~~~~~~~~g~~~~~~a~~~d~~~~e- 66 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-EK----------------FEKEAAELGKGSFKYAWVLDKLKAE- 66 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-HH----------------HHHHGGGGSSSCCCHHHHHHHHHHH-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-HH----------------hhhhHHhcCCcchhhhhhhccchhH-
Confidence 34689999999999999999999741 111000 0 00 0000000000111222222222222
Q ss_pred hhhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh----
Q 007054 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---- 191 (620)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~---- 191 (620)
+..|.+..+. . ..+..+ ...++||||||..+ ....+..++..+|++||+|++.+...
T Consensus 67 -r~~GiTi~~~--~--~~~~~~-~~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf 127 (458)
T 1f60_A 67 -RERGITIDIA--L--WKFETP-KYQVTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGI 127 (458)
T ss_dssp -HHTTCCCSCS--C--EEEECS-SEEEEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHT
T ss_pred -HhcCcEEEEE--E--EEEecC-CceEEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCcccccc
Confidence 2233222222 1 122232 35799999999532 23445678899999988765443211
Q ss_pred ----cchHHHHHHHHhCCCCC-ceEEEeccCCCCC
Q 007054 192 ----ATSDAMKLAREVDPTGE-RTFGVLTKLDLMD 221 (620)
Q Consensus 192 ----~~~~~l~l~~~~~~~~~-rti~VltK~D~~~ 221 (620)
.+.+.+.+++.. +. ++|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 233334444433 44 4899999999984
No 180
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.68 E-value=7.1e-09 Score=107.81 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCccccccc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p 75 (620)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999874334445667666
No 181
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.66 E-value=3.4e-08 Score=106.27 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=45.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch------hc--chHHHHHHHHhCCCCCce
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD------IA--TSDAMKLAREVDPTGERT 210 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d------~~--~~~~l~l~~~~~~~~~rt 210 (620)
...++||||||..+ ....+..++..+|++||+++..+.. +. +.+.+.+++... ..++
T Consensus 83 ~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~--~~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG--LDQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT--CTTC
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC--CCeE
Confidence 45799999999643 2334567889999998877655421 21 222333344332 2468
Q ss_pred EEEeccCCCCCC
Q 007054 211 FGVLTKLDLMDK 222 (620)
Q Consensus 211 i~VltK~D~~~~ 222 (620)
|+|+||+|+.+.
T Consensus 148 ivviNK~Dl~~~ 159 (435)
T 1jny_A 148 IVAVNKMDLTEP 159 (435)
T ss_dssp EEEEECGGGSSS
T ss_pred EEEEEcccCCCc
Confidence 999999999864
No 182
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.66 E-value=5.5e-08 Score=103.64 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=45.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cchHHHHHHHHhCCCCCc-eEEEec
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMKLAREVDPTGER-TFGVLT 215 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~~~~l~l~~~~~~~~~r-ti~Vlt 215 (620)
....++|+||||..+ ....+..++..+|.+|+++++.+... .+.+.+.+++. .+.+ +|+|+|
T Consensus 73 ~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~---~~ip~iivviN 136 (405)
T 2c78_A 73 AKRHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ---VGVPYIVVFMN 136 (405)
T ss_dssp SSCEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CCeEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCEEEEEEE
Confidence 346899999999653 13445677889999988776543221 12233444443 3566 789999
Q ss_pred cCCCCC
Q 007054 216 KLDLMD 221 (620)
Q Consensus 216 K~D~~~ 221 (620)
|+|+.+
T Consensus 137 K~Dl~~ 142 (405)
T 2c78_A 137 KVDMVD 142 (405)
T ss_dssp CGGGCC
T ss_pred CccccC
Confidence 999985
No 183
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.64 E-value=3.2e-09 Score=111.60 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999987
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.62 E-value=2.5e-08 Score=113.24 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...+.||||||..+. ...+..+++.+|.+|+++++.+ .... ....+.+.+...+.+.|+|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvDa~~-g~~~-~~~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLDAQS-GVEP-QTETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEETTT-BSCH-HHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEECCCC-CCcH-HHHHHHHHHHHcCCCEEEEEECCC
Confidence 467999999998652 2235667888999988776543 3322 222334444445789999999999
Q ss_pred CCCC
Q 007054 219 LMDK 222 (620)
Q Consensus 219 ~~~~ 222 (620)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.61 E-value=3.4e-08 Score=100.82 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEEeccCCchhcchHHHHHHHHhCC
Q 007054 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILAISPANQDIATSDAMKLAREVDP 205 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~-~q~~~~~~~~~~~~~~yi~~-------------~~~iil~V~~a~~d~~~~~~l~l~~~~~~ 205 (620)
..++++||||+...... ..-..+...+.+....|+.. ++++++++.|....+...+ ..+.+.+.+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 57899999998542110 01122333333333355433 2345555555433342333 466777754
Q ss_pred CCCceEEEeccCCCCCCCCc--HHHHHhCCccccCCCeeEEeeCChhhhhccCCHHH
Q 007054 206 TGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (620)
Q Consensus 206 ~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~lg~~~v~~~s~~~~~~~~~~~~ 260 (620)
..++++|+||.|+..+... ..+.........+..|+.+.+.++ ++++.+....
T Consensus 155 -~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~ 209 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQT 209 (301)
T ss_dssp -TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHH
T ss_pred -cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHH
Confidence 4689999999999864321 111111112223456666666655 6665554443
No 186
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.60 E-value=3.7e-08 Score=103.38 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.-.+|++||.+|+|||||+|+|+|..+.......||..|..-.+. .++. .+ ..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~-v~~~-------------------r~-~~l~~--- 76 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVP-VPDE-------------------RF-DFLCQ--- 76 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEE-CCCH-------------------HH-HHHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEE-ECCc-------------------cc-eeecc---
Confidence 346899999999999999999999876333445677666332211 0000 00 00000
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~ 186 (620)
.... .. .....++++||||+...... .+.+.+....|++++|+|+++|..
T Consensus 77 -~~~p--------~~-----~~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~VvD~ 126 (396)
T 2ohf_A 77 -YHKP--------AS-----KIPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLTRA 126 (396)
T ss_dssp -HHCC--------SE-----EECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEEEC
T ss_pred -ccCc--------cc-----ccccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEEec
Confidence 0000 00 00235899999999874322 123334567889999999876654
No 187
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.59 E-value=1.5e-07 Score=99.88 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=44.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchh-cchHHHHHHHHhCCCCCc-eEEEec
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMKLAREVDPTGER-TFGVLT 215 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~~~~l~l~~~~~~~~~r-ti~Vlt 215 (620)
....++||||||.. .....+..++..+|.+||++++.+... .+.+.+.+++. .+.+ .|+|+|
T Consensus 64 ~~~~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~---~~vp~iivviN 127 (397)
T 1d2e_A 64 AARHYAHTDCPGHA-------------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ---IGVEHVVVYVN 127 (397)
T ss_dssp SSCEEEEEECSSHH-------------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CCeEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 34689999999942 223455678899999988776543221 12233444443 3567 689999
Q ss_pred cCCCCC
Q 007054 216 KLDLMD 221 (620)
Q Consensus 216 K~D~~~ 221 (620)
|+|+.+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999985
No 188
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.57 E-value=2.5e-08 Score=99.34 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCCeEEEEcCC---------CCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQ---------SSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~---------ssGKSSllnaL~g~ 61 (620)
...+|+|||++ |+|||||+|++++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 44699999999 99999999999994
No 189
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.56 E-value=9e-08 Score=108.61 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...++||||||..+. ...+..+++.+|.+|+++++.+ ....+ .....+.+...+.+.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~~-g~~~~-t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSSQ-GVEPQ-SETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETTT-CSCHH-HHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECCC-Ccchh-hHHHHHHHHHcCCCEEEEEECCC
Confidence 467999999997541 4456778889999988776544 22222 22333334445789999999999
Q ss_pred CCCC
Q 007054 219 LMDK 222 (620)
Q Consensus 219 ~~~~ 222 (620)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9854
No 190
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.55 E-value=1e-08 Score=107.61 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.+|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 589999999999999999999974
No 191
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.54 E-value=6.2e-09 Score=115.97 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc--------hhcchHHHHHHHHhCCCCC-c
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--------DIATSDAMKLAREVDPTGE-R 209 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~--------d~~~~~~l~l~~~~~~~~~-r 209 (620)
...++||||||..+... .+..++..+|++||+|+.... ...+...+.++..+ +. +
T Consensus 254 ~~~i~iiDTPGh~~f~~-------------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~ 317 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFIS-------------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISE 317 (592)
T ss_dssp -----CCEEESSSEEEE-------------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCC
T ss_pred CeEEEEEECCChHHHHH-------------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCe
Confidence 36899999999754211 112356778988877654431 12233444455544 44 4
Q ss_pred eEEEeccCCCCC
Q 007054 210 TFGVLTKLDLMD 221 (620)
Q Consensus 210 ti~VltK~D~~~ 221 (620)
+|+|+||+|+.+
T Consensus 318 iIvviNKiDl~~ 329 (592)
T 3mca_A 318 IVVSVNKLDLMS 329 (592)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEecccccc
Confidence 899999999986
No 192
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.53 E-value=1e-07 Score=103.36 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=39.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch--------hcchHHHHHHHHhCCCCCc-
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--------IATSDAMKLAREVDPTGER- 209 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d--------~~~~~~l~l~~~~~~~~~r- 209 (620)
...++||||||..+ ....+..++..+|++||+|+..+.. ..+.+.+.++.. .+.+
T Consensus 120 ~~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINH 183 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSS
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCE
Confidence 45789999999632 1233456778999998877654432 123344444443 3455
Q ss_pred eEEEeccCCCCC
Q 007054 210 TFGVLTKLDLMD 221 (620)
Q Consensus 210 ti~VltK~D~~~ 221 (620)
+|+|+||+|+.+
T Consensus 184 iivviNK~Dl~~ 195 (467)
T 1r5b_A 184 LVVVINKMDEPS 195 (467)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECccCCC
Confidence 899999999965
No 193
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.52 E-value=3.1e-07 Score=104.33 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=47.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
..+.||||||..+ ....+..+++.+|.+|++|++.. +... ....+.+.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa~~-gv~~-qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYCAVG-GVQP-QSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEeCCC-CCcH-HHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 6799999999753 23456678889999988766543 3322 2233444455557899999999998
Q ss_pred CCC
Q 007054 220 MDK 222 (620)
Q Consensus 220 ~~~ 222 (620)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 194
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.52 E-value=9e-08 Score=100.08 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=61.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (620)
.+|++||.+|+|||||+|+|+|..........||..|+.-.. ..+. . .+.......
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v~~-------------------~----~l~~~~~~~ 57 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PLED-------------------E----RLYALQRTF 57 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-ECCC-------------------H----HHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ecCh-------------------H----HHHHHHHHh
Confidence 479999999999999999999975323344567777743221 1100 0 111111111
Q ss_pred cCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC
Q 007054 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (620)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a 187 (620)
... .. ..+.....+.|+||||+......+. .+ .+....+++.+|+|++++...
T Consensus 58 ~~~-~~---------~~~~~~~~i~lvDtpGl~~~a~~~~--~l----g~~fl~~ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 58 AKG-ER---------VPPVVPTHVEFVDIAGLVKGAHKGE--GL----GNQFLAHIREVAAIAHVLRCF 110 (368)
T ss_dssp CBT-TB---------CCCEECCEEEEEECCSCCCCCCSSS--CT----THHHHHHHHTCSEEEEEEECC
T ss_pred ccc-cc---------ccccCCceEEEEECCCccccccccc--hH----HHHHHHHHHhCCEEEEEEECC
Confidence 110 00 0000124689999999987543321 11 234456789999988766543
No 195
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.51 E-value=1.5e-07 Score=94.44 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=49.4
Q ss_pred CCcEEEeCCCCCccccCCCC-ccHHHHHHHHHHHhh--------------cCCCeEEEEeccCCchhcchHHHHHHHHhC
Q 007054 140 VNLTLIDLPGLTKVAVEGQP-DTIVEDIESMVRSYV--------------EKPNSVILAISPANQDIATSDAMKLAREVD 204 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~-~~~~~~~~~~~~~yi--------------~~~~~iil~V~~a~~d~~~~~~l~l~~~~~ 204 (620)
+.++++|+||+......... +.+.+.+......++ ..+++.++++++...++...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 57899999999764332211 112222222222221 124777777777666664444 66777777
Q ss_pred CCCCceEEEeccCCCCCCC
Q 007054 205 PTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 205 ~~~~rti~VltK~D~~~~~ 223 (620)
.. .++|.|+||+|.+.++
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8999999999999754
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.50 E-value=7.5e-07 Score=92.53 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.45 E-value=1.1e-07 Score=110.20 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
...+.||||||..+. ...+..|++.+|.+|++++.. .....+. ....+.+...+.+.|+|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvDa~-~g~~~qt-~~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDTI-EGVCVQT-ETVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEETT-TBSCHHH-HHHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEeCC-CCCCHHH-HHHHHHHHHcCCCeEEEEECCC
Confidence 356899999998652 234677889999998876544 3332232 2333444445789999999999
Q ss_pred CC
Q 007054 219 LM 220 (620)
Q Consensus 219 ~~ 220 (620)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 87
No 198
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.43 E-value=3.9e-07 Score=98.89 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=45.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCc-eEEEeccC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTKL 217 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~r-ti~VltK~ 217 (620)
..++.||||||..... ......+.... .++ .+|.++++|++ .... ++...++.+... .+ +++|+||+
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vllVvDa-~~g~---~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVYVMDA-SIGQ---ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEEEEET-TCCT---THHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEEEEec-cccc---cHHHHHHHHHhh-cCceEEEEeCC
Confidence 4689999999987521 11222232222 233 78888666554 4332 244455555432 45 58999999
Q ss_pred CCCCCCCcHHH
Q 007054 218 DLMDKGTNALD 228 (620)
Q Consensus 218 D~~~~~~~~~~ 228 (620)
|....+..+.+
T Consensus 251 D~~~~~g~~l~ 261 (504)
T 2j37_W 251 DGHAKGGGALS 261 (504)
T ss_dssp TSCCCCTHHHH
T ss_pred ccccchHHHHH
Confidence 99876654444
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.41 E-value=2.1e-06 Score=88.84 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999975
No 200
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.41 E-value=3.2e-07 Score=106.92 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=45.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch-hcchHHHHHHHHhCCCCCc-eEEEec
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDAMKLAREVDPTGER-TFGVLT 215 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d-~~~~~~l~l~~~~~~~~~r-ti~Vlt 215 (620)
....++||||||.. .....+..++..+|.+||+|+..+.. ..+.+.+.+++.. +.+ +|+|+|
T Consensus 357 ~~~kI~IIDTPGHe-------------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVVIN 420 (1289)
T 3avx_A 357 PTRHYAHVDCPGHA-------------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLN 420 (1289)
T ss_dssp SSCEEEEEECCCHH-------------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH---TCSCEEEEEE
T ss_pred CCEEEEEEECCChH-------------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc---CCCeEEEEEe
Confidence 34689999999943 23455567889999998877654321 1233444455543 566 789999
Q ss_pred cCCCCC
Q 007054 216 KLDLMD 221 (620)
Q Consensus 216 K~D~~~ 221 (620)
|+|+.+
T Consensus 421 KiDLv~ 426 (1289)
T 3avx_A 421 KCDMVD 426 (1289)
T ss_dssp CCTTCC
T ss_pred eccccc
Confidence 999985
No 201
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.35 E-value=1.1e-06 Score=96.97 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
..+.|+|||.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 567899999999999999999999864
No 202
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.34 E-value=3.5e-07 Score=96.24 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCc-CcccCcccccccEE
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLV 77 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~-lP~~~~~~Tr~p~~ 77 (620)
.-..|++||.+|||||||+|+|+|..+ .......||..|+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 346899999999999999999999875 34455567777743
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.34 E-value=1.4e-06 Score=86.50 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhh-----CCCcC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVV-----GRDFL 64 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~-----g~~~l 64 (620)
..+.++++|..|+||||++++|. |.+++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 56789999999999999999998 66553
No 204
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.32 E-value=5.3e-07 Score=101.90 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
..+.|+|+|+.++|||||+++|+|........|.+. .+....|.....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~------------------------~g~~~~d~~~~e-------- 55 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE------------------------EGTTTTDYTPEA-------- 55 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG------------------------GTCCSSCCSHHH--------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec------------------------CCcccccCCHHH--------
Confidence 456899999999999999999997543101111110 011111111100
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
...| ..+...... +.. ....+.|+||||..+ ....+..+++.+|.+++++++ ...+..+ .
T Consensus 56 ~~~g--iti~~~~~~--~~~-~~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVvD~-~~g~~~q-t 115 (665)
T 2dy1_A 56 KLHR--TTVRTGVAP--LLF-RGHRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAVSA-EAGVQVG-T 115 (665)
T ss_dssp HHTT--SCCSCEEEE--EEE-TTEEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEEET-TTCSCHH-H
T ss_pred HhcC--CeEEecceE--Eee-CCEEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEEcC-Ccccchh-H
Confidence 0111 122222222 222 245789999999653 134567788899999887764 3333222 2
Q ss_pred HHHHHHhCCCCCceEEEeccCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
..+.+.+...+.+.|+|+||+|+.
T Consensus 116 ~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHccCCEEEEecCCchh
Confidence 234444444578999999999997
No 205
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.30 E-value=3.2e-06 Score=86.29 Aligned_cols=72 Identities=14% Similarity=0.303 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc--hHH---HHHHHHhCCCCCceEEE
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDA---MKLAREVDPTGERTFGV 213 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~--~~~---l~l~~~~~~~~~rti~V 213 (620)
...+.|+||||--+.... .+ +...|.++++++|++++..+. +.. ..+ +..++...| +.+.++|
T Consensus 45 ~v~LqIWDTAGQErf~~~----~l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEP----SY------DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCCC----SH------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred EEEEEEEECCCchhccch----hh------hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEE
Confidence 368999999996542100 00 356789999999887765543 211 111 222333344 5899999
Q ss_pred eccCCCCCC
Q 007054 214 LTKLDLMDK 222 (620)
Q Consensus 214 ltK~D~~~~ 222 (620)
.||+|+.++
T Consensus 113 gNK~DL~~~ 121 (331)
T 3r7w_B 113 IHKVDGLSE 121 (331)
T ss_dssp CCCCCSSCS
T ss_pred EECcccCch
Confidence 999999864
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.30 E-value=2.6e-06 Score=90.59 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=51.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||..... ......+..+ ..+..+|.++|+++ +.. .+++...++.+++....+.+|+||+|
T Consensus 182 ~~DvVIIDTaGrl~~d-----~~lm~el~~i--~~~~~pd~vlLVvD-A~~---gq~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKED-----KALIEEMKQI--SNVIHPHEVILVID-GTI---GQQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHHH--HHHHCCSEEEEEEE-GGG---GGGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred CCCEEEEECCCcccch-----HHHHHHHHHH--HHhhcCceEEEEEe-CCC---chhHHHHHHHHHhhCCCeEEEEECCC
Confidence 3789999999976422 1122223222 22336787766554 443 34566677777766677889999999
Q ss_pred CCCCCCcHHHHH
Q 007054 219 LMDKGTNALDVL 230 (620)
Q Consensus 219 ~~~~~~~~~~~l 230 (620)
....+..+..+.
T Consensus 251 ~~~~gG~~ls~~ 262 (443)
T 3dm5_A 251 GSAKGGGALSAV 262 (443)
T ss_dssp SCSSHHHHHHHH
T ss_pred CcccccHHHHHH
Confidence 987765555543
No 207
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.27 E-value=3.6e-06 Score=89.13 Aligned_cols=119 Identities=24% Similarity=0.277 Sum_probs=69.0
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc-cccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T-r~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
.+.|+++|+.|||||||+|+|+|..- | ..|.++ ..+ .+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~-p-~~GsI~~~g~-~~-------------------------------------- 107 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN-E-EEGAAKTGVV-EV-------------------------------------- 107 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT-T-STTSCCCCC------------------------------------------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC-c-cCceEEECCe-ec--------------------------------------
Confidence 45899999999999999999999742 3 223222 111 00
Q ss_pred hhcCCCCCccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHH
Q 007054 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~ 196 (620)
+...+. ...+..++++++|+||+.... ....+.++.+ -+...+..+. + +... . ....
T Consensus 108 ---------t~~~~v--~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~~~-l-S~G~-~-~kqr 164 (413)
T 1tq4_A 108 ---------TMERHP--YKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFFII-I-SATR-F-KKND 164 (413)
T ss_dssp ----------CCCEE--EECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEEEE-E-ESSC-C-CHHH
T ss_pred ---------ceeEEe--ccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCeEE-e-CCCC-c-cHHH
Confidence 000111 122345689999999986421 1122222221 1334454433 3 3322 2 3334
Q ss_pred HHHHHHhCCCCCceEEEeccCCCC
Q 007054 197 MKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 197 l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
+.+++.+...+.|+++|+||+|.+
T Consensus 165 v~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 165 IDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHhcCCCeEEEEecCccc
Confidence 557777766789999999999975
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.19 E-value=8.5e-07 Score=89.45 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
..+|++||.+|+|||||+|+|+|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 35899999999999999999999875
No 209
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.16 E-value=1.5e-06 Score=95.74 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
+...+.||||||-.+.. .-+.+.++-.|..|++|+ |..+...|. ..+.+.+...+.|.|+++||+
T Consensus 98 ~~~~iNlIDTPGHvDF~-------------~Ev~raL~~~DgAvlVvd-a~~GV~~qT-~~v~~~a~~~~lp~i~fINK~ 162 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFS-------------EDTYRVLTAVDSALVVID-AAKGVEAQT-RKLMDVCRMRATPVMTFVNKM 162 (548)
T ss_dssp TTEEEEEECCCCGGGCS-------------HHHHHHHHSCSEEEEEEE-TTTBSCHHH-HHHHHHHHHTTCCEEEEEECT
T ss_pred CCEEEEEEeCCCcHHHH-------------HHHHHHHHhcCceEEEee-cCCCccccc-HHHHHHHHHhCCceEEEEecc
Confidence 45679999999977643 224556778999977665 445554443 345566666789999999999
Q ss_pred CCCC
Q 007054 218 DLMD 221 (620)
Q Consensus 218 D~~~ 221 (620)
|...
T Consensus 163 Dr~~ 166 (548)
T 3vqt_A 163 DREA 166 (548)
T ss_dssp TSCC
T ss_pred cchh
Confidence 9864
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.11 E-value=2e-06 Score=96.73 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=49.6
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEecc
Q 007054 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 137 ~~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
++...++||||||-.+. ..-+.+.++-.|..|++|+ |..+...|.. .+.+.+...+.|.|+++||
T Consensus 64 ~~~~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVVD-a~~GV~~qT~-~v~~~a~~~~lp~i~~INK 128 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLIS-AKDGVQAQTR-ILFHALRKMGIPTIFFINK 128 (638)
T ss_dssp CSSCBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCEE-SSCTTCSHHH-HHHHHHHHHTCSCEECCEE
T ss_pred ECCEEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEEe-CCCCCcHHHH-HHHHHHHHcCCCeEEEEec
Confidence 34567999999997653 2234566788999977554 5556655543 4555555567899999999
Q ss_pred CCCCCC
Q 007054 217 LDLMDK 222 (620)
Q Consensus 217 ~D~~~~ 222 (620)
+|....
T Consensus 129 mDr~~a 134 (638)
T 3j25_A 129 IDQNGI 134 (638)
T ss_dssp CCSSSC
T ss_pred cccccC
Confidence 998643
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.09 E-value=8.9e-07 Score=85.57 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.|+|+|.+|+|||||+|+|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999976
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.03 E-value=2.6e-06 Score=90.54 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=49.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||....+ ........+..+. ..+ .++.++|++++. . .+++...++.+.+....+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~---~d~~lm~el~~i~-~~~-~pd~vlLVlDa~-~---gq~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYG---EETKLLEEMKEMY-DVL-KPDDVILVIDAS-I---GQKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSC---CTTHHHHHHHHHH-HHH-CCSEEEEEEEGG-G---GGGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCcccc---CCHHHHHHHHHHH-Hhh-CCcceEEEEeCc-c---chHHHHHHHHHhcccCCcEEEEeccc
Confidence 5789999999975410 1112333333322 222 577776665543 3 24455566666655567889999999
Q ss_pred CCCCCCcHHHH
Q 007054 219 LMDKGTNALDV 229 (620)
Q Consensus 219 ~~~~~~~~~~~ 229 (620)
....+..+..+
T Consensus 250 ~~a~~G~als~ 260 (433)
T 3kl4_A 250 GTAKGGGALSA 260 (433)
T ss_dssp GCSCHHHHHHH
T ss_pred ccccchHHHHH
Confidence 88766544444
No 213
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.03 E-value=3.8e-06 Score=95.76 Aligned_cols=136 Identities=13% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCCcCcccCcccccccEEEEEEecCCCCcceeeeecCCCCccCChHHHHHHHHHHHh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (620)
++..|+|||+-.+|||||.++|+-.. |...+.. +.. .+..+.|+...+.
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~~g------~v~------------~~~~~~D~~~~E~------- 60 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHKLG------EVH------------DGAATTDWMVQEQ------- 60 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHHC------------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCcCc------eec------------CCCccCCChHHHH-------
Confidence 45689999999999999999997321 1111000 000 0011222221111
Q ss_pred hhcCCCCCccCccEEEEEecCC----CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhc
Q 007054 117 RVTGKTKQISPIPIHLSIYSPN----VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (620)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~----~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~ 192 (620)
..+-.+....+.+...+.. ...+.||||||-.+.. .-+.+.++-.|..|++|+ |..+..
T Consensus 61 ---eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~-------------~Ev~~aLr~~DgavlvVD-aveGV~ 123 (709)
T 4fn5_A 61 ---ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT-------------IEVERSLRVLDGAVVVFC-GTSGVE 123 (709)
T ss_dssp ----------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH-------------HHHHHHHHHCSEEEEEEE-TTTCSC
T ss_pred ---HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH-------------HHHHHHHHHhCeEEEEEE-CCCCCc
Confidence 1112233445555443322 2458999999977632 234456677899877664 555654
Q ss_pred chHHHHHHHHhCCCCCceEEEeccCCCCC
Q 007054 193 TSDAMKLAREVDPTGERTFGVLTKLDLMD 221 (620)
Q Consensus 193 ~~~~l~l~~~~~~~~~rti~VltK~D~~~ 221 (620)
.|. ..+.+++...+.+.|+|+||+|...
T Consensus 124 ~qT-~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 124 PQS-ETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp HHH-HHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred hhH-HHHHHHHHHcCCCeEEEEccccccC
Confidence 443 3456666666899999999999864
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.03 E-value=1.6e-05 Score=84.92 Aligned_cols=79 Identities=27% Similarity=0.281 Sum_probs=46.8
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHH-HhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCC-CceEEEec
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGVLT 215 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~-~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~-~rti~Vlt 215 (620)
...++.||||||.... ....+..+.. ..+..+|.+++++. +..+ +++...++.+.+.. ..+.+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vllVvd-a~~g---~~~~~~~~~~~~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIILVID-GTIG---QQAGIQAKAFKEAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEEEEE-GGGG---GGHHHHHHHHHTTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeEEee-cccc---HHHHHHHHHHhhcccCCeEEEEe
Confidence 3568999999998652 1122333211 12236888766554 4433 24555666665543 33899999
Q ss_pred cCCCCCCCCcHHH
Q 007054 216 KLDLMDKGTNALD 228 (620)
Q Consensus 216 K~D~~~~~~~~~~ 228 (620)
|+|....+.....
T Consensus 247 K~D~~~~~g~~l~ 259 (432)
T 2v3c_C 247 KLDGSAKGGGALS 259 (432)
T ss_dssp CSSSCSTTHHHHH
T ss_pred CCCCccchHHHHH
Confidence 9998765543444
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.88 E-value=6.5e-06 Score=82.02 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCCc
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~~ 63 (620)
.+|++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999999865
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.84 E-value=1.1e-05 Score=78.17 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
..|.|+|+|.+|+|||||++.|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999764
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.82 E-value=7.1e-05 Score=76.11 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=50.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
.++.++||+|....... .+.....+...+.+..+..|+.++|++++.+ .++.+..++.+......+++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~~-~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t----~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHN-LMEELKKVKRAIAKADPEEPKEVWLVLDAVT----GQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCHH-HHHHHHHHHHHHHHHCTTCCSEEEEEEETTB----CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH----HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 35679999998643211 1122222223344455667887767555433 334555555554333468999999998
Q ss_pred CCCCCcHHHHH
Q 007054 220 MDKGTNALDVL 230 (620)
Q Consensus 220 ~~~~~~~~~~l 230 (620)
...+..+..+.
T Consensus 260 ~a~gg~~l~i~ 270 (304)
T 1rj9_A 260 TAKGGVLIPIV 270 (304)
T ss_dssp SCCCTTHHHHH
T ss_pred cccccHHHHHH
Confidence 87776665543
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.71 E-value=4e-05 Score=82.26 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=50.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHH---HHHhh-cCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEec
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESM---VRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLT 215 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~---~~~yi-~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~Vlt 215 (620)
.++.||||+|...... +....+..+ ++... ..++.++|+++ +.. .++++..++.+...-.-+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLD-att---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTID-AST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEE-GGG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEec-Ccc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 4788999999864321 122222222 22222 23667766554 433 35666677776654456889999
Q ss_pred cCCCCCCCCcHHHHHh
Q 007054 216 KLDLMDKGTNALDVLE 231 (620)
Q Consensus 216 K~D~~~~~~~~~~~l~ 231 (620)
|.|....+.....++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777776666553
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.65 E-value=0.00019 Score=73.73 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=50.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCC
Q 007054 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (620)
Q Consensus 140 ~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~ 219 (620)
.++.++||+|..... ......+..+.+.. .+|-.++++++.. .++.+..++.+.....-+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~~-----~~l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-----RNLMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTT-----TCHHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHH-----HHHHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 467789999986532 22444444443332 3666666555332 357777777776555678999999998
Q ss_pred CCCCCcHHHHH
Q 007054 220 MDKGTNALDVL 230 (620)
Q Consensus 220 ~~~~~~~~~~l 230 (620)
...+.....++
T Consensus 281 ~a~~G~~l~~~ 291 (328)
T 3e70_C 281 DARGGAALSIS 291 (328)
T ss_dssp CSCCHHHHHHH
T ss_pred ccchhHHHHHH
Confidence 76665555443
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.64 E-value=5.5e-05 Score=80.75 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHH-HhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~-~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++.||||||..... ...+..+.. .++..++.+++++.+ ... +++...++.+++.-.-+-+|+||+
T Consensus 183 ~~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVvda-~~g---~~~~~~~~~f~~~l~i~gvVlnK~ 250 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVVDA-MTG---QDAANTAKAFNEALPLTGVVLTKV 250 (433)
T ss_dssp TCSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEEET-TBC---TTHHHHHHHHHHHSCCCCEEEECT
T ss_pred CCCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEeec-chh---HHHHHHHHHHhccCCCeEEEEecC
Confidence 4689999999975421 112222221 335578888776654 332 445556666554222355799999
Q ss_pred CCCCCCCcHHHH
Q 007054 218 DLMDKGTNALDV 229 (620)
Q Consensus 218 D~~~~~~~~~~~ 229 (620)
|....+..+..+
T Consensus 251 D~~~~~g~~l~i 262 (433)
T 2xxa_A 251 DGDARGGAALSI 262 (433)
T ss_dssp TSSSCCTHHHHH
T ss_pred CCCccHHHHHHH
Confidence 987666444443
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.62 E-value=0.00017 Score=73.09 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||...... .+.....+..+ ..+..+|.+++++.+ .. .++++..++.+.+.-.-+.+|+||+|
T Consensus 180 ~~D~ViIDTpg~~~~~~---~~~l~~el~~i--~~~~~~d~vllVvda-~~---g~~~~~~~~~~~~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGE---EAALLEEMKNI--YEAIKPDEVTLVIDA-SI---GQKAYDLASKFNQASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTC---HHHHHHHHHHH--HHHHCCSEEEEEEEG-GG---GGGHHHHHHHHHHTCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCccccc---HHHHHHHHHHH--HHHhcCCEEEEEeeC-Cc---hHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 46899999999865100 00111222221 123368888776554 32 34556667766653333778999999
Q ss_pred CCCCCCcHHHH
Q 007054 219 LMDKGTNALDV 229 (620)
Q Consensus 219 ~~~~~~~~~~~ 229 (620)
....+.....+
T Consensus 251 ~~~~~g~~~~~ 261 (297)
T 1j8m_F 251 GTAKGGGALSA 261 (297)
T ss_dssp GCTTHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 87655434443
No 222
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.58 E-value=9e-05 Score=79.00 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..-.|+|+|.+++|||||||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3447999999999999999999974
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.48 E-value=4.9e-05 Score=77.32 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH---hh-cCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS---YV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~---yi-~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~Vl 214 (620)
.+++.|+||||..... ......+..+..- .+ ..++.++|++ ++.. .++++..++.+.....-+-+|+
T Consensus 186 ~~dvvIiDtpg~~~~~-----~~l~~eL~~l~~~i~~~i~~~p~~vllVl-da~t---~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTK-----KNLMEELRKVHRVVKKKIPDAPHETLLVI-DATT---GQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSCH-----HHHHHHHHHHHHHGGGTCTTCCSEEEEEE-EGGG---HHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhhH-----HHHHHHHHHHHHHHhhccCCCCcEEEEEE-ECCC---CHHHHHHHHHHHhcCCCCEEEE
Confidence 4689999999963211 1122223222211 12 2477776655 4442 3455555555543334567889
Q ss_pred ccCCCCCCCCcHHHHHh
Q 007054 215 TKLDLMDKGTNALDVLE 231 (620)
Q Consensus 215 tK~D~~~~~~~~~~~l~ 231 (620)
||.|....+..+.++..
T Consensus 257 Tk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 257 TKLDGTAKGGITLAIAR 273 (306)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCccchHHHHHHHH
Confidence 99999877776655543
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.34 E-value=0.0012 Score=67.42 Aligned_cols=83 Identities=24% Similarity=0.357 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHH---HHHHHhh-cCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEe
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIE---SMVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~---~~~~~yi-~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~Vl 214 (620)
..++.||||||...... .....+. ..+...+ ..+|.+++++. +.. .++++..++.+.+...-+-+|+
T Consensus 191 ~yD~VIIDTpg~l~~~~-----~l~~eL~~~~~vi~~~~p~~~d~vllVl~-a~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKT-----NLMAELEKMNKIIQQVEKSAPHEVLLVID-ATT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGHH-----HHHHHHHHHHHHHHTTCTTCCSEEEEEEE-GGG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCcccccH-----HHHHHHHHHHHHHhcccCCCCceEEEEEE-CCC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 46899999999765210 0111111 1121122 23777766554 433 3566667777776544556789
Q ss_pred ccCCCCCCCCcHHHHH
Q 007054 215 TKLDLMDKGTNALDVL 230 (620)
Q Consensus 215 tK~D~~~~~~~~~~~l 230 (620)
||+|....+..+..+.
T Consensus 262 tk~d~~~~~g~~~~~~ 277 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIK 277 (320)
T ss_dssp ECGGGCSCTTHHHHHH
T ss_pred eCCCCCCchhHHHHHH
Confidence 9999876665555543
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.27 E-value=0.0014 Score=66.27 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=44.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~--~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK 216 (620)
.+++.|+||||..... ...+.++. ..+. .++.+++ |.++..+ ..+..++++.+.. -...-+|+||
T Consensus 182 ~~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~~~~l-Vl~at~~--~~~~~~~~~~~~~-l~~~giVltk 248 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSIQSFL-VLSATAK--YEDMKHIVKRFSS-VPVNQYIFTK 248 (296)
T ss_dssp GSSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTEEEEE-EEETTBC--HHHHHHHTTTTSS-SCCCEEEEEC
T ss_pred CCCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCCeEEE-EEECCCC--HHHHHHHHHHHhc-CCCCEEEEeC
Confidence 4789999999987521 12233332 2333 3555544 4444432 2333444554543 2345677899
Q ss_pred CCCCCCCCcHHHHHh
Q 007054 217 LDLMDKGTNALDVLE 231 (620)
Q Consensus 217 ~D~~~~~~~~~~~l~ 231 (620)
.|....+..+..++.
T Consensus 249 ~D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 249 IDETTSLGSVFNILA 263 (296)
T ss_dssp TTTCSCCHHHHHHHH
T ss_pred CCcccchhHHHHHHH
Confidence 998876655555544
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00065 Score=70.45 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=48.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
+..++||.|+...... .+.++..+...+.+..+..|+-++|+++ +.... +....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 4578999998653211 1112222233344455677886767666 44333 33333444433335789999999988
Q ss_pred CCCCcHHHHH
Q 007054 221 DKGTNALDVL 230 (620)
Q Consensus 221 ~~~~~~~~~l 230 (620)
..+.....+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7776665554
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.18 E-value=0.00031 Score=74.54 Aligned_cols=80 Identities=28% Similarity=0.404 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
..++.||||||..... ......+..+ .. +-.++.++|++.+ .. .++++..++.+.+.-..+-+|+||+|
T Consensus 180 ~~DvVIIDTaG~l~~d-----~~l~~el~~i-~~-~~~pd~vlLVvDa-~t---gq~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 180 ARDLILVDTAGRLQID-----EPLMGELARL-KE-VLGPDEVLLVLDA-MT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCSEEEEEEEG-GG---TTHHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHh-hh-ccCCceEEEEEec-cc---hHHHHHHHHHHHhcCCceEEEEeCcC
Confidence 4689999999976431 1112222111 11 2268878776544 32 36666777766553345678999999
Q ss_pred CCCCCCcHHHH
Q 007054 219 LMDKGTNALDV 229 (620)
Q Consensus 219 ~~~~~~~~~~~ 229 (620)
....+..+..+
T Consensus 249 ~~~~~g~alsi 259 (425)
T 2ffh_A 249 GDARGGAALSA 259 (425)
T ss_dssp GCSSCHHHHHH
T ss_pred CcccHHHHHHH
Confidence 87665544443
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.13 E-value=0.00069 Score=68.70 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=46.8
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
+..++|+.|+...... .+.+...+...+.+..+.+|+-++|+++ +.... +....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 4578999998653210 1111222222233334567886666666 44433 22333444433335689999999988
Q ss_pred CCCCcHHHHH
Q 007054 221 DKGTNALDVL 230 (620)
Q Consensus 221 ~~~~~~~~~l 230 (620)
..+.....+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 7666555554
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.77 E-value=0.0028 Score=64.00 Aligned_cols=81 Identities=27% Similarity=0.363 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D 218 (620)
.+++.||||||..... ......+..+... -.++.+++++. +.. .++++..++.+.+.-.-+-+|+||+|
T Consensus 180 ~~D~viiDtpp~~~~d-----~~~~~~l~~~~~~--~~~~~~~lv~~-~~~---~~~~~~~~~~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID-----EPLMGELARLKEV--LGPDEVLLVLD-AMT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp TCCEEEEECCCCSSCC-----HHHHHHHHHHHHH--HCCSEEEEEEE-GGG---THHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred CCCEEEEeCCCCcccc-----HHHHHHHHHHhhh--cCCCEEEEEEe-CCC---cHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 4689999999976421 1112222222221 25777766554 432 35555666655543333557899999
Q ss_pred CCCCCCcHHHHH
Q 007054 219 LMDKGTNALDVL 230 (620)
Q Consensus 219 ~~~~~~~~~~~l 230 (620)
....+..+.++.
T Consensus 249 ~~~~~g~~~~~~ 260 (295)
T 1ls1_A 249 GDARGGAALSAR 260 (295)
T ss_dssp GCSSCHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 876665555544
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.63 E-value=0.00074 Score=68.47 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 389999999999999999999974
No 231
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.95 E-value=0.0058 Score=64.80 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (620)
+-.|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3467899999999999999776
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.78 E-value=0.014 Score=58.97 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|..|||||||+|+|+ .
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-S
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 68999999999999999999 5
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.47 E-value=0.025 Score=53.05 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCC--CCCceEEEecc
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP--TGERTFGVLTK 216 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~--~~~rti~VltK 216 (620)
..++.|||+||... ..+...+..+|.+|+++.+...+......++.++.+.. .+.+..+|+|+
T Consensus 75 ~yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~ 139 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITR 139 (206)
T ss_dssp TSSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred CCCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 36899999998653 12233455689887777654433112233344444431 13456899999
Q ss_pred CCCC
Q 007054 217 LDLM 220 (620)
Q Consensus 217 ~D~~ 220 (620)
+|.-
T Consensus 140 ~~~~ 143 (206)
T 4dzz_A 140 KIEM 143 (206)
T ss_dssp BCTT
T ss_pred cCCC
Confidence 9954
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.12 E-value=0.0078 Score=56.74 Aligned_cols=23 Identities=13% Similarity=0.497 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|+.|||||||+++|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 37899999999999999999975
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.03 E-value=0.0094 Score=55.28 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999996
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.00 E-value=0.014 Score=60.19 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 79999999999999999999974
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.0096 Score=55.13 Aligned_cols=23 Identities=9% Similarity=0.478 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|+.|||||||++.|.|.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999985
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.92 E-value=0.0096 Score=56.13 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.87 E-value=0.011 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-.|+|+|.+|||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999996
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.85 E-value=0.012 Score=56.72 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 241
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.81 E-value=0.015 Score=57.54 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999997
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.78 E-value=0.011 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999996
No 243
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.77 E-value=0.014 Score=55.79 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999997
No 244
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.76 E-value=0.013 Score=59.94 Aligned_cols=31 Identities=32% Similarity=0.661 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.++|+|..|||||||+++|+|. +|...|.+|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~ 203 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEERIIS 203 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCcEEE
Confidence 6899999999999999999996 344445443
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.74 E-value=0.014 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|.+|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999997
No 246
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.73 E-value=0.014 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.73 E-value=0.019 Score=56.11 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 248
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.69 E-value=0.015 Score=57.96 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999997
No 249
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.69 E-value=0.015 Score=60.34 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.|+|+|..|||||||+++|+|. +|...+.+|
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ 207 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRLIT 207 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceEEE
Confidence 7999999999999999999996 354445443
No 250
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.68 E-value=0.018 Score=58.22 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
-.++++|+.|||||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 378999999999999999999975
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.65 E-value=0.012 Score=55.03 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=25.8
Q ss_pred EEEEcCCCCCHHHHHHhhhCCC--cCcccCccccccc
Q 007054 41 VAVVGGQSSGKSSVLESVVGRD--FLPRGSGIVTRRP 75 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~~--~lP~~~~~~Tr~p 75 (620)
|||+|+.|||||||++.|+... .+...-..+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1233345566665
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.65 E-value=0.015 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999973
No 253
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.60 E-value=0.016 Score=55.98 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.56 E-value=0.016 Score=57.19 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.55 E-value=0.013 Score=54.99 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 256
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.55 E-value=0.015 Score=63.10 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.|+|+|.+||||||++++|+|. +|.+.+.+|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 4899999999999999999995 465556555
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.53 E-value=0.017 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.-|+++|+.|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999986
No 258
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.49 E-value=0.018 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 259
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.44 E-value=0.018 Score=56.62 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 260
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.42 E-value=0.015 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-.++|+|+.|||||||++.|+|.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999996
No 261
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.42 E-value=0.017 Score=56.68 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 262
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.37 E-value=0.019 Score=56.69 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 68899999999999999999973
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.34 E-value=0.016 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999986
No 264
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.34 E-value=0.02 Score=56.32 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.++++|+.|||||||++.|+|.- |..+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 68899999999999999999973 43445443
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.34 E-value=0.016 Score=55.50 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999995
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.30 E-value=0.021 Score=55.44 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 267
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.29 E-value=0.02 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
-.++++|+.|||||||++.|+|.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999973
No 268
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.26 E-value=0.02 Score=52.78 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.|+|+|..|||||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999975
No 269
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.24 E-value=0.023 Score=56.74 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999973
No 270
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.21 E-value=0.023 Score=56.39 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|+.|||||||++.|+|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 271
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.20 E-value=0.021 Score=57.58 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=52.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCC
Q 007054 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (620)
Q Consensus 141 ~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~ 220 (620)
.+.++|| .-+ ...+...|++++|++|++++..+.+......-++...+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer-------------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHR-------------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCC-------------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccc-------------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899998 111 1233446999999998876654433211111122222222468999999999997
Q ss_pred CCCC--cHHHHHhCCccccCCCeeEEeeCChhhhhc
Q 007054 221 DKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (620)
Q Consensus 221 ~~~~--~~~~~l~~~~~~l~lg~~~v~~~s~~~~~~ 254 (620)
+... +..+.... .... ..|+.+++.++.++++
T Consensus 129 ~~~~v~~~~~~~~~-~~~~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 129 DEDDLRKVRELEEI-YSGL-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp CHHHHHHHHHHHHH-HTTT-SCEEECCTTTCTTHHH
T ss_pred CchhHHHHHHHHHH-Hhhh-CcEEEEECCCCcCHHH
Confidence 6422 11121111 0011 5666666666655543
No 272
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.19 E-value=0.022 Score=56.36 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999973
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.10 E-value=0.024 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 688999999999999998664
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.08 E-value=0.022 Score=56.51 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.07 E-value=0.026 Score=55.26 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 276
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.06 E-value=0.024 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999973
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.02 E-value=0.021 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999997
No 278
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.92 E-value=0.019 Score=58.01 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|||+.|||||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999996
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.91 E-value=0.022 Score=56.26 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|+.||||||++++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6899999999999999999996
No 280
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.88 E-value=0.029 Score=55.31 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|+.|||||||++.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999974
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.83 E-value=0.023 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.83 E-value=0.024 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.+||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999875
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.76 E-value=0.025 Score=57.10 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 7899999999999999999985
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.66 E-value=0.027 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|.+||||||+++.|.|.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999987
No 285
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.64 E-value=0.045 Score=56.70 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=43.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch---------hcchHHHHHHHHhC----C
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVD----P 205 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d---------~~~~~~l~l~~~~~----~ 205 (620)
...+.++||||-. ..+.+...|.++++++|++++.++.| -.-.+++.+...+. .
T Consensus 200 ~~~l~i~Dt~Gq~-------------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQR-------------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchh-------------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 4678999999953 23556677899999999888766522 11223344444432 1
Q ss_pred CCCceEEEeccCCCCC
Q 007054 206 TGERTFGVLTKLDLMD 221 (620)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (620)
.+.++|+|+||+|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 3678999999999863
No 286
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.63 E-value=0.015 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+.|+|||..|||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.49 E-value=0.023 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999997
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.41 E-value=0.042 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhh---CCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVV---GRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~---g~~ 62 (620)
..|+|+|.+||||||+++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 489999999999999999999 875
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.39 E-value=0.031 Score=51.82 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+++|.+||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.39 E-value=0.03 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.+|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 291
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.36 E-value=0.04 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999983
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.23 E-value=0.045 Score=49.45 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCCHHHHHHhh
Q 007054 39 PSVAVVGGQSSGKSSVLESV 58 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL 58 (620)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 293
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.13 E-value=0.034 Score=57.52 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999996
No 294
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.09 E-value=0.023 Score=57.42 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 169 MVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 169 ~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
+.+.|+.+.|.++++++..+.++.....-++...+...+.+.++|+||+|+.++
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 344589999999776654433332221112232333357899999999999864
No 295
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.06 E-value=0.036 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|..|||||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999986
No 296
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.06 E-value=0.042 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999999973
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.01 E-value=0.073 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.-++++|++|+|||||+.+|.|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999986
No 298
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.01 E-value=0.036 Score=56.21 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|..|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 6889999999999999999996
No 299
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.99 E-value=0.052 Score=51.75 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~ 69 (620)
.++|+|++|||||||++.|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 689999999999999999999533344433
No 300
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.97 E-value=0.27 Score=59.70 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|++||+.|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999986
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.96 E-value=0.04 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.+||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999999753
No 302
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.90 E-value=0.092 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
...|+|+|.+|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999885
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.88 E-value=0.032 Score=53.69 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=15.3
Q ss_pred eEEEEcCCCCCHHHHHHhhh-CC
Q 007054 40 SVAVVGGQSSGKSSVLESVV-GR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~-g~ 61 (620)
.|+++|+.|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999 86
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.86 E-value=0.045 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+.|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 305
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.83 E-value=0.039 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
...+|+|+.+||||||++||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 306
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.82 E-value=0.058 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999743
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.79 E-value=0.051 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.-..|+|+|.+||||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999999864
No 308
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.62 E-value=0.086 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+|+|..||||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999874
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.58 E-value=0.047 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|..||||||+.++|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999999986
No 310
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.51 E-value=0.048 Score=53.38 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHhhh---CCCc
Q 007054 38 LPSVAVVGGQSSGKSSVLESVV---GRDF 63 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~---g~~~ 63 (620)
-..|+++|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3589999999999999999999 8754
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.50 E-value=0.072 Score=48.73 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.|+|+|.+|||||||++.|++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999999874
No 312
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.50 E-value=0.058 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999974
No 313
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.49 E-value=0.058 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 68999999999999999999974
No 314
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.44 E-value=0.056 Score=55.77 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999974
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.40 E-value=0.064 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|.+||||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999873
No 316
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.39 E-value=0.051 Score=50.98 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 317
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.33 E-value=0.063 Score=55.46 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68999999999999999999974
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.33 E-value=0.052 Score=52.79 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|+.|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 319
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.30 E-value=0.05 Score=57.46 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|+.||||||+|++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 320
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.28 E-value=0.36 Score=48.41 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=37.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc-hHHHHHHHHhC-CCCCceE-EEec
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREVD-PTGERTF-GVLT 215 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~-~~~l~l~~~~~-~~~~rti-~Vlt 215 (620)
..+++|||+|+..... .+...+..+|.+|+++.+....+.. ...++.++.+. ..+.+.+ +|+|
T Consensus 156 ~yD~ViiD~p~~~~~~--------------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG--------------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCG--------------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchH--------------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEe
Confidence 4789999998865421 0123467789888776554332211 12233334332 1234444 7899
Q ss_pred cCCC
Q 007054 216 KLDL 219 (620)
Q Consensus 216 K~D~ 219 (620)
+++.
T Consensus 222 ~~~~ 225 (307)
T 3end_A 222 RSRA 225 (307)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9983
No 321
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.27 E-value=0.064 Score=55.47 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68899999999999999999974
No 322
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.24 E-value=0.13 Score=52.59 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=48.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCc---------hhcchHHHHHHHHh----C
Q 007054 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---------DIATSDAMKLAREV----D 204 (620)
Q Consensus 138 ~~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~---------d~~~~~~l~l~~~~----~ 204 (620)
+...+.++||+|- +..+.+...|.++++++|++++.+.. .-.-.+++.+...+ .
T Consensus 159 ~~v~l~iwDtaGQ-------------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQ-------------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSC-------------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCc-------------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 3467999999993 45678889999999999988765411 11122333343333 2
Q ss_pred CCCCceEEEeccCCCCC
Q 007054 205 PTGERTFGVLTKLDLMD 221 (620)
Q Consensus 205 ~~~~rti~VltK~D~~~ 221 (620)
..+.++|+|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24678999999999874
No 323
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.23 E-value=0.065 Score=55.70 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999999974
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.19 E-value=0.069 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|.+||||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999986
No 325
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.17 E-value=0.053 Score=56.43 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|++||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 326
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.14 E-value=0.068 Score=55.53 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68999999999999999999974
No 327
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.05 E-value=0.061 Score=50.44 Aligned_cols=24 Identities=42% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
...|+++|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.03 E-value=0.05 Score=56.41 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|..|||||||++.|.|.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999997
No 329
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.99 E-value=0.072 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999999974
No 330
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.98 E-value=0.073 Score=47.58 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhh
Q 007054 39 PSVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (620)
+-.+|+|+.+|||||+++||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.94 E-value=0.077 Score=48.35 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 332
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.87 E-value=0.086 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999864
No 333
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.87 E-value=0.15 Score=50.86 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007054 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (620)
Q Consensus 166 ~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~ 222 (620)
....+.+++.++|+|+.+++ +..+..... ..+.+.+ .+.+.++|+||+|+++.
T Consensus 13 a~~~~~~~l~~aDvVl~VvD-Ar~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVD-ARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEE-TTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHhhCCEEEEEEe-CCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 45667888999999877655 444443321 1233434 46899999999999974
No 334
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.82 E-value=0.045 Score=55.65 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.+|.++|+|..|||||||||.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999863
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.72 E-value=0.061 Score=54.37 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 336
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.66 E-value=0.056 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-..++++|++|+|||||+++|.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999986
No 337
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.53 E-value=0.078 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999986
No 338
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.53 E-value=0.072 Score=51.44 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.++++|+.|||||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999994
No 339
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.52 E-value=0.059 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999999974
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.42 E-value=0.086 Score=49.36 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.+||||||+..+|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 341
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.40 E-value=0.085 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999963
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.33 E-value=0.098 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999864
No 343
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.075 Score=56.86 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.=+.++|+|+.|||||||++.|+|.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34699999999999999999999973
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.28 E-value=0.11 Score=47.89 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..+.|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998654
No 345
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.24 E-value=0.11 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCHHHHHHhhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (620)
.+.|+++|.+||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999996
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.15 E-value=0.11 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
|.|+++|.+||||||+-..|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 347
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.14 E-value=0.1 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.11 E-value=0.097 Score=48.22 Aligned_cols=22 Identities=36% Similarity=0.279 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 349
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.01 E-value=0.11 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+.|+++|.+||||||+...|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 350
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.96 E-value=0.059 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999973
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.84 E-value=0.15 Score=47.63 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCC-eEEEEcCCCCCHHHHHHhhhC
Q 007054 37 ALP-SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 37 ~lP-~IvVvG~~ssGKSSllnaL~g 60 (620)
..| .|+++|.++|||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445 799999999999999999864
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.82 E-value=0.092 Score=53.34 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|.+|||||||++.|.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 353
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.72 E-value=0.12 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (620)
.|+++|.+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999997
No 354
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=90.68 E-value=0.11 Score=53.68 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch---------hcchHHHHHHHHhCC----
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVDP---- 205 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d---------~~~~~~l~l~~~~~~---- 205 (620)
...+.++||+|--. .+.+...|.+++++||+|++.++.| -.-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe~-------------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRS-------------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchh-------------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 45789999999432 2455667999999999988766532 112334444444422
Q ss_pred CCCceEEEeccCCCCC
Q 007054 206 TGERTFGVLTKLDLMD 221 (620)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (620)
.+.++|+|+||.|+.+
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 3678999999999863
No 355
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.63 E-value=0.12 Score=47.79 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 356
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=90.61 E-value=0.14 Score=52.14 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC---------CchhcchHHHHHHHHhCC----
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA---------NQDIATSDAMKLAREVDP---- 205 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a---------~~d~~~~~~l~l~~~~~~---- 205 (620)
...+.++||.|- +..+.+...|.++++++|+++.-+ +..-.-.+++.+...+..
T Consensus 166 ~v~l~iwDtgGQ-------------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQ-------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCS-------------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCc-------------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 467899999993 345667788999999999887322 111112334445544422
Q ss_pred CCCceEEEeccCCCCC
Q 007054 206 TGERTFGVLTKLDLMD 221 (620)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (620)
.+.++|+|+||+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 3578999999999874
No 357
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.58 E-value=0.14 Score=56.72 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|+|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 358
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.57 E-value=0.14 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhh
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~ 59 (620)
..+.|+++|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 359
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.56 E-value=0.11 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
.+-.+|+|+.||||||+++||+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999983
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.46 E-value=0.14 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 361
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.42 E-value=0.17 Score=55.33 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.++|+|..|||||||+++|+|.. |..+|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 68899999999999999999973 33444443
No 362
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.39 E-value=0.15 Score=47.13 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
.+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999863
No 363
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.32 E-value=0.17 Score=52.45 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 164 ~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+.+.++...|.+..+.++++++..+. ...+....+.+.. +.+.++|+||+|+.++.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~---~~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDF---NGSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSH---HHHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCC---cccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 56677888888888888776654432 1222222333322 68899999999998754
No 364
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.27 E-value=0.16 Score=55.38 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 71 (620)
.++++|..|||||||+++|+|.. +..+|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 325 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI--TADEGSV 325 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 57899999999999999999973 3344443
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.23 E-value=0.14 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.21 E-value=0.12 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|..||||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.14 E-value=0.16 Score=47.32 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 368
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.13 E-value=0.12 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+++|++|+|||||+++|.|.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999985
No 369
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.10 E-value=0.14 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 370
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.08 E-value=0.16 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 371
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.08 E-value=1.1 Score=42.86 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=38.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcch-HHHHHHHHhCCCCCceEEEeccC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-DAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~-~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..+++|||+|+-.... +...+..+|.+|+++.+....+..- ...++.+.... .+..+|+||.
T Consensus 131 ~yD~viiD~pp~~~~~---------------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~--~~~~~v~N~~ 193 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHL---------------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI--KKVRYVINKV 193 (254)
T ss_dssp CCSEEEEEECTTCTTC---------------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC--SCEEEEEEEE
T ss_pred CCCEEEEeCCCcccHH---------------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC--ccEEEEEeCC
Confidence 4689999999855321 2234567898888776654333211 12233444432 5678999999
Q ss_pred C
Q 007054 218 D 218 (620)
Q Consensus 218 D 218 (620)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 8
No 372
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.04 E-value=0.16 Score=45.99 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.99 E-value=0.15 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|++.|..||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 374
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.96 E-value=2.1 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.+.|+||+|||++..||.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999999864
No 375
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.95 E-value=0.19 Score=55.65 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCCcCcccCcccc
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 72 (620)
.++|+|..|||||||++.|+|.. +-.+|.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~ 414 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVE 414 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEEE
Confidence 68899999999999999999973 33344443
No 376
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.88 E-value=0.12 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+++|++|+|||||+++|.|.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999985
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.85 E-value=0.23 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+..++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999985
No 378
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.75 E-value=0.13 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 379
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.71 E-value=0.17 Score=46.89 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
+.|+++|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999964
No 380
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.64 E-value=1.4 Score=46.44 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.5
Q ss_pred CCC-eEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALP-SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP-~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..| -|.+.|+||+|||++..|+.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 445 4999999999999999999864
No 381
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.64 E-value=0.17 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 382
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.59 E-value=0.16 Score=55.54 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999973
No 383
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.55 E-value=0.17 Score=46.57 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+++|.+||||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 384
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.54 E-value=0.16 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
-..|+|+|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 385
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.54 E-value=0.14 Score=48.62 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999975
No 386
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.48 E-value=0.19 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 387
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.46 E-value=0.15 Score=56.36 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999997
No 388
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.33 E-value=0.14 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-.++++|+.|||||||+++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999996
No 389
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.32 E-value=0.17 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.27 E-value=0.17 Score=55.99 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999997
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.22 E-value=0.084 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 392
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.21 E-value=0.33 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.|+++|.+|+||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999875
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.20 E-value=0.16 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
-..|+++|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 394
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.20 E-value=0.14 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|++|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 395
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.18 E-value=0.17 Score=55.99 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999973
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.14 E-value=0.18 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (620)
-+-.+|+|+.++||||+++||.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999999999986
No 397
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.13 E-value=0.17 Score=55.99 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 398
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=89.10 E-value=0.17 Score=52.97 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=46.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCch---------hcchHHHHHHHHhC----C
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVD----P 205 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d---------~~~~~~l~l~~~~~----~ 205 (620)
...+.|+||+|--+ .+.+...|.++++++|+|++.++.| -.-.++..+...+. .
T Consensus 216 ~v~l~iwDtaGQe~-------------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRD-------------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGG-------------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhh-------------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 36789999999532 2456678999999999887665521 11123344444432 2
Q ss_pred CCCceEEEeccCCCCC
Q 007054 206 TGERTFGVLTKLDLMD 221 (620)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (620)
...++|+|+||+|+.+
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 3578999999999853
No 399
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.08 E-value=0.2 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
...|+++|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 400
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.06 E-value=0.19 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999973
No 401
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.00 E-value=0.43 Score=43.22 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+.|+++|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.97 E-value=0.18 Score=47.05 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
|.|+|.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.86 E-value=0.19 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 404
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.76 E-value=0.42 Score=47.61 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
-|+++|.+||||||+...|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 405
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.69 E-value=0.16 Score=56.28 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|+|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999997
No 406
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.68 E-value=0.2 Score=45.99 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
+.|+++|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.65 E-value=0.21 Score=47.30 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+|+|.+||||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
No 408
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.64 E-value=0.17 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+++|++|+|||||+++|.|.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999985
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.61 E-value=0.22 Score=47.11 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 410
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.59 E-value=0.16 Score=56.31 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|+|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999997
No 411
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.59 E-value=0.16 Score=51.28 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=33.4
Q ss_pred HhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 172 SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 172 ~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
..+.+.|.++++++....++.....-+++..+...+.+.++|+||+|+.++.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 4678899886655433344433322233333345688999999999999763
No 412
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.59 E-value=0.24 Score=46.94 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 413
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.57 E-value=0.21 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999854
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.55 E-value=0.21 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999973
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.38 E-value=0.27 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
...|+|+|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999873
No 416
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.32 E-value=1.4 Score=51.21 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHhh
Q 007054 40 SVAVVGGQSSGKSSVLESV 58 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL 58 (620)
.++|+|+.++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.17 E-value=0.19 Score=52.20 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999974
No 418
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.99 E-value=0.2 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+|+|.+|||||||-.+|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999753
No 419
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.94 E-value=0.044 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|+.|||||||+++|.|..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999999973
No 420
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=87.91 E-value=0.21 Score=51.81 Aligned_cols=56 Identities=21% Similarity=0.124 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCCchhcchHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007054 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (620)
Q Consensus 164 ~~~~~~~~~yi~~~~~iil~V~~a~~d~~~~~~l~l~~~~~~~~~rti~VltK~D~~~~~ 223 (620)
+..+++...|...++.++++++..+.+. +-.-.+.+.+. +.+.++|+||+|+.+..
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 3456677778788888877766544321 11111223332 68999999999999764
No 421
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.87 E-value=0.19 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 422
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.73 E-value=0.41 Score=46.57 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999764
No 423
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.73 E-value=0.22 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|.+||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 424
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.64 E-value=0.28 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCCHHHHHHhhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (620)
...|+++|.+||||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 425
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.56 E-value=0.23 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.++++|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.51 E-value=0.29 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.46 E-value=0.28 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|..+|||||+.+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 428
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.13 E-value=0.25 Score=47.35 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|++|+|||||+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999984
No 429
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=87.09 E-value=0.27 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
.-.+|+|+.||||||+++||..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999853
No 430
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.07 E-value=0.24 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|+|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 431
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.06 E-value=0.28 Score=54.26 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHhhhCCC
Q 007054 41 VAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 41 IvVvG~~ssGKSSllnaL~g~~ 62 (620)
++++|..|||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 432
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.85 E-value=0.49 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+++|++|+|||+|+++|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999985
No 433
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.76 E-value=0.27 Score=50.22 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.++++|++|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999984
No 434
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.76 E-value=0.34 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999953
No 435
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.71 E-value=0.6 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|.++|+|++|+||||+++++.+.
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.66 E-value=0.35 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.+||||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999963
No 437
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.48 E-value=0.36 Score=43.66 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+.|+++|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.41 E-value=0.27 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++++|+.|||||||++.|+|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999999973
No 439
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.41 E-value=0.86 Score=39.97 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.+.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.41 E-value=0.43 Score=45.73 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.+||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.19 E-value=0.36 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|++.|.+||||||+++.|.+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999875
No 442
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.16 E-value=0.58 Score=43.53 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999754
No 443
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=86.09 E-value=0.29 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
...+++|+.|+||||++++|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 47899999999999999999864
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.81 E-value=0.46 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
|-|+|+|+++||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999999754
No 445
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.75 E-value=0.4 Score=46.00 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g 60 (620)
....|+++|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999985
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.73 E-value=0.44 Score=45.89 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 447
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.68 E-value=2.1 Score=45.12 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.+.|+||+|||++..|+.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 448
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.61 E-value=0.37 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g 60 (620)
+-|.++|+|.+|||||+++++|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999999985
No 449
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=85.59 E-value=0.34 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
..++|+|+.|+|||||++||.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 368999999999999999999863
No 450
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.56 E-value=0.12 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..++++|+.||||||||++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999875
No 451
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.55 E-value=3.4 Score=43.03 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.+.|+||+|||++..|+.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 5999999999999999999864
No 452
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.48 E-value=0.37 Score=58.33 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 453
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=85.45 E-value=0.36 Score=49.98 Aligned_cols=22 Identities=45% Similarity=0.653 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhh
Q 007054 38 LPSVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (620)
-.-.+++|+.||||||+|+||.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.38 E-value=0.6 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+.|+|+|.++||||||-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 455
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.29 E-value=0.41 Score=46.48 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
..|+|.|.+||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 456
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.29 E-value=1.1 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHhhhC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g 60 (620)
|.|+|+|+++||||||...|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4689999999999999998873
No 457
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.26 E-value=0.35 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+++|++|+||||+..+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 458
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.13 E-value=0.35 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-...+++|+.|||||||++||...
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999999853
No 459
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.02 E-value=0.34 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 460
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.93 E-value=0.4 Score=47.58 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (620)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999997
No 461
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.90 E-value=0.39 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+|.+++.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999986
No 462
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.82 E-value=0.28 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 463
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.72 E-value=0.51 Score=44.75 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+.|+++|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.65 E-value=0.52 Score=44.47 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|.|||||+|.-..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998854
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.65 E-value=0.45 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 466
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.63 E-value=0.92 Score=39.71 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.+.|++|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999999865
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.52 E-value=0.43 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.+++.|++|+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999888875
No 468
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.47 E-value=0.96 Score=45.74 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..+.|++.|++|+|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999999754
No 469
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=84.36 E-value=0.38 Score=49.46 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=44.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCC---------chhcchHHHHHHHHhC----C
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---------QDIATSDAMKLAREVD----P 205 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~---------~d~~~~~~l~l~~~~~----~ 205 (620)
...+.|+||+|--+ .+.+...|.++++++|+|++-+. ..-.-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQe~-------------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-------------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTT-------------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchh-------------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 45789999999532 24556779999999988875431 1011123334444332 2
Q ss_pred CCCceEEEeccCCCCC
Q 007054 206 TGERTFGVLTKLDLMD 221 (620)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (620)
...++|+|+||+|+.+
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3578999999999864
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.30 E-value=0.42 Score=57.99 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|||+.|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6899999999999999999996
No 471
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.27 E-value=7 Score=39.39 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=21.0
Q ss_pred CCCe-EEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPS-VAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~-IvVvG~~ssGKSSllnaL~g~ 61 (620)
.+|. +.+.|++|+|||++..++...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHH
Confidence 4555 899999999999999988753
No 472
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=83.66 E-value=2.2 Score=48.74 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.++|+|+.++||||+|+.|.|.-
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68999999999999999999863
No 473
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.66 E-value=0.65 Score=44.15 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+.|+|+|.|||||+|....|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34667899999999999988754
No 474
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.63 E-value=0.64 Score=43.16 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+-|++.|++|+|||+|+.+|.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 475
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.54 E-value=0.52 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+.|+|+|+++||||||...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46789999999999999999743
No 476
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=83.43 E-value=1.6 Score=41.27 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCCchh-cchHHH-HHHHHhCC----CCCceEEEeccC-CCCCCCCcHHHHHhCC-cc
Q 007054 164 EDIESMVRSYVEKPNSVILAISPANQDI-ATSDAM-KLAREVDP----TGERTFGVLTKL-DLMDKGTNALDVLEGR-SY 235 (620)
Q Consensus 164 ~~~~~~~~~yi~~~~~iil~V~~a~~d~-~~~~~l-~l~~~~~~----~~~rti~VltK~-D~~~~~~~~~~~l~~~-~~ 235 (620)
+.++.+.+.|.++.|+||+||+++..+. ...+.+ ++.+.+++ .+.+.++..||- |+.. .-...++.... ..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~-Ams~~EI~e~L~L~ 191 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYLAHELHLN 191 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC-BCCHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC-CCCHHHHHHHcCCc
Confidence 5678899999999999999888775532 122222 12232332 356777777996 5532 21222222211 11
Q ss_pred ccCCCee--EEeeCChhhhhccCCH
Q 007054 236 RLQHPWV--GIVNRSQADINRNIDM 258 (620)
Q Consensus 236 ~l~lg~~--~v~~~s~~~~~~~~~~ 258 (620)
.++..|+ ++++.+++++.+.+++
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EGLdW 216 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNGIEW 216 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHH
T ss_pred CCCCCEEEEEeECCCCcCHHHHHHH
Confidence 1245775 4566666666554443
No 477
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=83.26 E-value=1.5 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++|+|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5899999999999999998643
No 478
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.24 E-value=3 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCC-eEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALP-SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP-~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..| -|.+.|+||+|||++..||.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 344 5999999999999999999865
No 479
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.88 E-value=0.31 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 6889999999999999999986
No 480
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.70 E-value=6.2 Score=38.10 Aligned_cols=89 Identities=10% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCCchhcc-hHHHHHHHHhCCCCCceEEEeccC
Q 007054 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREVDPTGERTFGVLTKL 217 (620)
Q Consensus 139 ~~~l~lVDlPGl~~~~~~~q~~~~~~~~~~~~~~yi~~~~~iil~V~~a~~d~~~-~~~l~l~~~~~~~~~rti~VltK~ 217 (620)
..++.|||+|+-.. ..+...+..+|.+|+++.+....+.. ...++.++.+.+ +.+..+|+|++
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNL-FLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTC-CCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhc-cCCEEEEEecc
Confidence 46899999998543 12334556799988877765443311 122334444433 34677999999
Q ss_pred CCCCCCCcHHHHHhCCccccCCCeeEEeeCC
Q 007054 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (620)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~v~~~s 248 (620)
+......+..+.+.. +..+.++.+..
T Consensus 208 ~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 208 KKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp CTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred cCcchHHHHHHHHhc-----CcccceecCcH
Confidence 543333344554443 34555666654
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.62 E-value=0.56 Score=45.82 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
....|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999764
No 482
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.36 E-value=4.7 Score=42.69 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.+.|+||+|||++..||.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 6999999999999999999864
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.29 E-value=0.54 Score=54.70 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.++++|+.|||||||++.|.|-
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999953
No 484
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.83 E-value=1.1 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.-|.+.|++|+|||++..+|.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999764
No 485
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.75 E-value=0.75 Score=43.05 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
..|+++|++++|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999865
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.67 E-value=0.86 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|+++|++|+|||+|..+|.|.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 487
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.56 E-value=0.61 Score=52.38 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHhhh
Q 007054 40 SVAVVGGQSSGKSSVLESVV 59 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (620)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999999875
No 488
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.37 E-value=0.61 Score=48.52 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhCCC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.-+.++|+|.+|||||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999763
No 489
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=81.15 E-value=0.74 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHhhhC
Q 007054 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~g 60 (620)
+.|.++|+|.++||||++||+|+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999999875
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.06 E-value=0.74 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.-|+++|.+||||||+.+.|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999753
No 491
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.94 E-value=2 Score=41.36 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+-|++.|++|+|||++..+|.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 492
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.93 E-value=0.88 Score=42.79 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-++|.|++|+||||++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.87 E-value=0.48 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g 60 (620)
.+.|+|.|..|||||||.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.77 E-value=0.75 Score=44.17 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|++.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 495
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.75 E-value=0.62 Score=47.82 Aligned_cols=23 Identities=22% Similarity=0.227 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHhhhCCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGRD 62 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~~ 62 (620)
.+.|+|++|||||||+..|+|.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999864
No 496
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.68 E-value=0.77 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHhhhCC
Q 007054 39 PSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~g~ 61 (620)
+.|+|+|.++||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 37999999999999999998864
No 497
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.31 E-value=1.1 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHhhhCC
Q 007054 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~g~ 61 (620)
...|+|.|++|+|||||++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 498
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=79.90 E-value=0.84 Score=43.57 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHhhhC
Q 007054 40 SVAVVGGQSSGKSSVLESVVG 60 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g 60 (620)
.++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999777654
No 499
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=79.79 E-value=0.85 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
.|++||..|||||||++.|.|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 500
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.78 E-value=1.2 Score=44.43 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHhhhCC
Q 007054 40 SVAVVGGQSSGKSSVLESVVGR 61 (620)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~g~ 61 (620)
-|.+.|++|+|||++..+|.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999875
Done!