Query 007056
Match_columns 620
No_of_seqs 316 out of 2155
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 18:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02321 2-isopropylmalate syn 100.0 7E-135 1E-139 1136.1 68.1 566 45-611 55-620 (632)
2 TIGR00973 leuA_bact 2-isopropy 100.0 2E-122 4E-127 1022.3 60.3 493 76-598 1-494 (494)
3 PRK00915 2-isopropylmalate syn 100.0 3E-122 6E-127 1026.6 61.3 504 74-607 2-507 (513)
4 PRK09389 (R)-citramalate synth 100.0 3E-121 7E-126 1010.3 58.4 484 76-601 2-488 (488)
5 TIGR00977 LeuA_rel 2-isopropyl 100.0 6E-119 1E-123 998.6 61.3 494 76-603 1-519 (526)
6 PRK03739 2-isopropylmalate syn 100.0 1E-118 2E-123 1001.3 61.7 497 75-601 29-551 (552)
7 TIGR00970 leuA_yeast 2-isoprop 100.0 4E-118 9E-123 998.7 62.3 505 75-602 25-564 (564)
8 KOG2367 Alpha-isopropylmalate 100.0 3E-119 7E-124 943.7 45.6 508 68-603 49-557 (560)
9 PRK12344 putative alpha-isopro 100.0 7E-115 2E-119 967.2 59.3 498 74-604 3-519 (524)
10 PLN03228 methylthioalkylmalate 100.0 2.4E-97 5E-102 816.2 45.5 407 62-468 70-476 (503)
11 COG0119 LeuA Isopropylmalate/h 100.0 5.7E-95 1.2E-99 781.5 43.5 402 76-499 2-408 (409)
12 PRK11858 aksA trans-homoaconit 100.0 1.4E-91 3.1E-96 754.8 42.3 371 74-471 2-373 (378)
13 TIGR02660 nifV_homocitr homoci 100.0 9.2E-91 2E-95 745.9 40.7 362 77-465 2-364 (365)
14 TIGR02090 LEU1_arch isopropylm 100.0 1.9E-89 4.1E-94 734.7 39.5 362 77-465 1-362 (363)
15 PRK14847 hypothetical protein; 100.0 2.7E-72 5.8E-77 587.1 37.3 297 62-375 23-331 (333)
16 cd07945 DRE_TIM_CMS Leptospira 100.0 4.8E-62 1E-66 505.3 33.3 274 80-372 1-280 (280)
17 cd07942 DRE_TIM_LeuA Mycobacte 100.0 1E-61 2.3E-66 502.2 33.4 269 79-359 4-284 (284)
18 cd07948 DRE_TIM_HCS Saccharomy 100.0 7.7E-60 1.7E-64 484.4 32.3 262 77-359 1-262 (262)
19 PLN02746 hydroxymethylglutaryl 100.0 4.7E-59 1E-63 492.6 33.7 270 74-369 44-332 (347)
20 TIGR02146 LysS_fung_arch homoc 100.0 4.6E-58 9.9E-63 488.4 38.0 343 79-448 1-343 (344)
21 cd07939 DRE_TIM_NifV Streptomy 100.0 1.3E-58 2.9E-63 475.5 31.9 258 79-359 1-258 (259)
22 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 1.8E-58 3.9E-63 476.8 32.4 268 79-359 1-268 (268)
23 PRK05692 hydroxymethylglutaryl 100.0 1.5E-57 3.2E-62 473.2 33.8 267 74-366 2-287 (287)
24 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 2.2E-57 4.8E-62 469.7 31.5 264 79-359 1-273 (273)
25 cd07947 DRE_TIM_Re_CS Clostrid 100.0 4.1E-56 8.9E-61 460.0 31.0 260 77-359 1-279 (279)
26 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 9E-56 1.9E-60 457.4 31.2 256 79-359 1-274 (274)
27 cd03174 DRE_TIM_metallolyase D 100.0 5.1E-53 1.1E-57 433.1 30.0 257 80-359 1-265 (265)
28 PF00682 HMGL-like: HMGL-like 100.0 9.6E-53 2.1E-57 425.8 25.8 236 85-333 1-236 (237)
29 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 1.7E-52 3.7E-57 433.6 27.0 246 79-362 1-270 (275)
30 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 2.1E-52 4.4E-57 430.8 27.4 247 79-361 1-260 (266)
31 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 7.7E-52 1.7E-56 426.3 30.2 246 77-359 1-260 (263)
32 PRK14040 oxaloacetate decarbox 100.0 2.7E-50 5.7E-55 452.8 33.9 310 75-452 3-330 (593)
33 TIGR01108 oadA oxaloacetate de 100.0 1.6E-49 3.5E-54 446.1 33.7 298 79-452 1-324 (582)
34 PRK08195 4-hyroxy-2-oxovalerat 100.0 3.1E-49 6.8E-54 419.3 31.2 249 75-359 2-264 (337)
35 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 7.2E-49 1.6E-53 415.6 30.8 246 76-359 2-263 (333)
36 PRK09282 pyruvate carboxylase 100.0 2.1E-48 4.5E-53 438.3 36.2 301 75-451 2-328 (592)
37 PRK12330 oxaloacetate decarbox 100.0 2.4E-48 5.2E-53 426.4 28.8 278 75-389 3-317 (499)
38 PRK12331 oxaloacetate decarbox 100.0 2.1E-47 4.5E-52 417.3 30.5 260 75-362 2-275 (448)
39 PRK14041 oxaloacetate decarbox 100.0 7.5E-46 1.6E-50 405.7 31.2 253 76-362 2-274 (467)
40 PRK12581 oxaloacetate decarbox 100.0 1E-41 2.2E-46 371.1 33.1 255 75-363 11-285 (468)
41 PRK12999 pyruvate carboxylase; 100.0 3.3E-42 7.2E-47 412.1 29.2 278 70-380 526-832 (1146)
42 PRK14042 pyruvate carboxylase 100.0 1.1E-39 2.4E-44 365.5 29.7 280 75-380 2-295 (596)
43 TIGR01235 pyruv_carbox pyruvat 100.0 3.4E-34 7.4E-39 342.0 28.5 287 70-380 524-830 (1143)
44 KOG2368 Hydroxymethylglutaryl- 100.0 2.2E-33 4.7E-38 272.3 24.2 271 73-367 15-302 (316)
45 COG5016 Pyruvate/oxaloacetate 100.0 1.7E-31 3.7E-36 278.3 25.9 318 75-459 4-342 (472)
46 PF08502 LeuA_dimer: LeuA allo 100.0 2.2E-29 4.8E-34 233.9 18.9 133 456-601 1-133 (133)
47 COG1038 PycA Pyruvate carboxyl 99.9 2.4E-20 5.3E-25 206.9 22.3 270 69-363 528-816 (1149)
48 KOG0369 Pyruvate carboxylase [ 99.7 3.9E-17 8.5E-22 178.3 18.3 265 75-363 558-841 (1176)
49 TIGR02146 LysS_fung_arch homoc 99.7 3.5E-25 7.7E-30 235.9 -44.5 264 182-468 77-341 (344)
50 PRK07028 bifunctional hexulose 98.4 7.8E-06 1.7E-10 90.5 17.5 189 93-332 11-208 (430)
51 CHL00200 trpA tryptophan synth 98.0 0.00022 4.8E-09 74.0 17.3 174 96-307 27-228 (263)
52 PLN02591 tryptophan synthase 98.0 0.00049 1.1E-08 70.9 19.4 175 96-307 14-215 (250)
53 TIGR00262 trpA tryptophan synt 98.0 0.00084 1.8E-08 69.5 20.5 174 96-307 22-224 (256)
54 TIGR00423 radical SAM domain p 97.9 0.0021 4.6E-08 68.1 21.8 221 94-334 35-296 (309)
55 TIGR03700 mena_SCO4494 putativ 97.9 0.001 2.2E-08 71.9 19.6 223 94-334 78-338 (351)
56 TIGR03699 mena_SCO4550 menaqui 97.8 0.0015 3.2E-08 70.1 19.9 223 93-334 70-327 (340)
57 PRK13111 trpA tryptophan synth 97.8 0.001 2.3E-08 68.8 17.0 159 96-287 24-211 (258)
58 TIGR03551 F420_cofH 7,8-dideme 97.7 0.0018 4E-08 69.7 18.6 221 93-334 68-332 (343)
59 PRK08445 hypothetical protein; 97.7 0.0059 1.3E-07 66.0 21.5 226 93-334 71-332 (348)
60 PF00290 Trp_syntA: Tryptophan 97.4 0.0044 9.5E-08 64.2 15.0 175 96-307 22-223 (259)
61 PRK13125 trpA tryptophan synth 97.4 0.019 4E-07 59.0 19.6 175 95-307 15-211 (244)
62 COG0159 TrpA Tryptophan syntha 97.3 0.0068 1.5E-07 62.6 15.2 179 96-313 29-233 (265)
63 PRK07360 FO synthase subunit 2 97.3 0.017 3.7E-07 63.0 19.0 224 92-334 88-354 (371)
64 PRK08444 hypothetical protein; 97.2 0.027 5.8E-07 61.1 19.5 227 92-334 77-337 (353)
65 cd04726 KGPDC_HPS 3-Keto-L-gul 96.9 0.042 9.1E-07 54.1 16.5 167 94-307 9-183 (202)
66 TIGR03128 RuMP_HxlA 3-hexulose 96.9 0.025 5.5E-07 56.0 14.9 170 94-308 8-184 (206)
67 cd00945 Aldolase_Class_I Class 96.9 0.22 4.8E-06 48.2 20.9 180 96-307 11-198 (201)
68 PRK15108 biotin synthase; Prov 96.8 0.45 9.7E-06 51.5 24.1 220 94-334 75-309 (345)
69 PRK07094 biotin synthase; Prov 96.8 0.17 3.8E-06 53.8 20.7 196 94-311 69-281 (323)
70 PRK05926 hypothetical protein; 96.8 0.075 1.6E-06 58.0 18.0 205 92-313 96-331 (370)
71 cd04724 Tryptophan_synthase_al 96.8 0.063 1.4E-06 55.1 16.5 175 96-307 12-212 (242)
72 PLN02389 biotin synthase 96.7 0.2 4.2E-06 55.0 21.2 195 94-307 115-326 (379)
73 TIGR00433 bioB biotin syntheta 96.5 0.8 1.7E-05 47.9 23.5 214 94-327 61-289 (296)
74 PRK06256 biotin synthase; Vali 96.5 0.42 9.1E-06 51.2 21.4 211 94-327 90-315 (336)
75 PRK05927 hypothetical protein; 96.4 0.13 2.7E-06 55.8 16.7 239 83-334 63-333 (350)
76 PRK06552 keto-hydroxyglutarate 96.4 0.29 6.2E-06 49.4 18.0 156 96-307 23-180 (213)
77 PRK13209 L-xylulose 5-phosphat 96.1 0.43 9.3E-06 49.5 18.4 202 94-335 20-246 (283)
78 PRK09613 thiH thiamine biosynt 96.1 1.6 3.6E-05 49.1 23.8 205 92-316 112-348 (469)
79 TIGR02351 thiH thiazole biosyn 96.0 1.1 2.4E-05 48.9 21.8 175 93-282 101-296 (366)
80 TIGR02109 PQQ_syn_pqqE coenzym 96.0 1 2.3E-05 48.5 21.5 141 93-250 35-179 (358)
81 PRK08508 biotin synthase; Prov 95.8 0.82 1.8E-05 47.9 18.9 196 95-307 40-247 (279)
82 TIGR03550 F420_cofG 7,8-dideme 95.8 0.45 9.7E-06 50.9 17.1 222 92-334 32-294 (322)
83 PRK09240 thiH thiamine biosynt 95.8 0.56 1.2E-05 51.2 18.1 171 93-276 102-292 (371)
84 PRK09856 fructoselysine 3-epim 95.7 0.46 9.9E-06 49.0 16.6 195 100-335 15-240 (275)
85 TIGR01163 rpe ribulose-phospha 95.7 1.4 3.1E-05 43.3 19.5 172 94-307 7-190 (210)
86 PRK13397 3-deoxy-7-phosphohept 95.7 0.85 1.8E-05 47.1 18.1 185 94-313 25-224 (250)
87 PRK06245 cofG FO synthase subu 95.7 1.6 3.5E-05 46.8 21.2 222 94-334 40-298 (336)
88 PRK05301 pyrroloquinoline quin 95.7 0.81 1.8E-05 49.8 19.0 142 93-251 44-189 (378)
89 PRK13361 molybdenum cofactor b 95.5 0.44 9.5E-06 51.0 16.1 141 93-247 43-186 (329)
90 PRK09997 hydroxypyruvate isome 95.5 0.54 1.2E-05 48.3 16.1 186 101-335 18-233 (258)
91 PRK13307 bifunctional formalde 95.5 0.25 5.5E-06 54.2 14.2 191 95-332 182-376 (391)
92 PRK05718 keto-hydroxyglutarate 95.5 0.55 1.2E-05 47.4 15.6 151 95-304 24-177 (212)
93 PRK09234 fbiC FO synthase; Rev 95.5 0.93 2E-05 54.6 20.0 224 91-334 553-819 (843)
94 cd00452 KDPG_aldolase KDPG and 95.4 1.5 3.4E-05 43.0 18.4 156 96-308 14-169 (190)
95 COG0269 SgbH 3-hexulose-6-phos 95.4 0.29 6.3E-06 49.2 13.1 174 93-307 11-189 (217)
96 cd00019 AP2Ec AP endonuclease 95.3 1.5 3.3E-05 45.4 19.0 214 95-335 10-250 (279)
97 PRK13210 putative L-xylulose 5 95.3 0.69 1.5E-05 47.8 16.3 208 94-335 15-247 (284)
98 cd00739 DHPS DHPS subgroup of 95.2 1.7 3.6E-05 45.2 18.5 184 92-307 18-241 (257)
99 TIGR01182 eda Entner-Doudoroff 95.2 0.85 1.8E-05 45.8 15.7 154 95-307 17-173 (204)
100 PRK06801 hypothetical protein; 95.1 2.7 5.9E-05 44.4 20.0 181 94-309 25-232 (286)
101 PRK13398 3-deoxy-7-phosphohept 95.1 2.2 4.9E-05 44.5 19.1 177 95-312 38-235 (266)
102 cd00331 IGPS Indole-3-glycerol 95.0 2.2 4.8E-05 42.7 18.3 167 96-307 29-198 (217)
103 TIGR03234 OH-pyruv-isom hydrox 95.0 2.6 5.6E-05 42.9 19.1 187 95-335 14-232 (254)
104 TIGR03470 HpnH hopanoid biosyn 94.9 0.93 2E-05 48.4 15.9 159 94-272 58-228 (318)
105 COG0502 BioB Biotin synthase a 94.8 3.2 7E-05 44.6 19.7 221 92-332 81-314 (335)
106 TIGR02320 PEP_mutase phosphoen 94.8 1.2 2.5E-05 47.1 16.3 109 194-309 61-188 (285)
107 TIGR01859 fruc_bis_ald_ fructo 94.7 3.4 7.3E-05 43.6 19.5 184 94-309 23-229 (282)
108 PRK07998 gatY putative fructos 94.6 3.8 8.2E-05 43.2 19.2 182 94-308 25-227 (283)
109 PRK09989 hypothetical protein; 94.6 0.95 2.1E-05 46.4 14.8 186 101-335 18-233 (258)
110 TIGR00542 hxl6Piso_put hexulos 94.6 2.7 5.8E-05 43.6 18.3 202 94-335 15-241 (279)
111 TIGR01496 DHPS dihydropteroate 94.6 2.7 5.8E-05 43.6 18.0 125 92-246 17-163 (257)
112 PRK06267 hypothetical protein; 94.5 3.8 8.1E-05 44.5 19.9 206 94-327 62-284 (350)
113 cd04740 DHOD_1B_like Dihydroor 94.5 2 4.3E-05 45.1 17.1 144 149-310 91-260 (296)
114 PRK07709 fructose-bisphosphate 94.3 5.5 0.00012 42.1 19.7 184 94-308 25-231 (285)
115 PRK06015 keto-hydroxyglutarate 94.3 2.4 5.2E-05 42.5 16.2 153 95-305 13-167 (201)
116 PRK09140 2-dehydro-3-deoxy-6-p 94.3 3.1 6.7E-05 41.7 17.2 157 95-307 19-176 (206)
117 PRK01060 endonuclease IV; Prov 94.2 6.1 0.00013 40.8 20.1 209 101-335 15-251 (281)
118 PRK07315 fructose-bisphosphate 94.2 5.9 0.00013 42.0 19.8 185 94-309 25-231 (293)
119 PRK09196 fructose-1,6-bisphosp 94.2 4.1 8.9E-05 44.1 18.7 202 85-308 14-275 (347)
120 PRK07114 keto-hydroxyglutarate 94.1 1.9 4.1E-05 43.8 15.3 158 95-307 24-185 (222)
121 PRK12928 lipoyl synthase; Prov 94.1 1.2 2.6E-05 47.1 14.4 167 92-271 84-269 (290)
122 PRK08185 hypothetical protein; 94.1 9.3 0.0002 40.3 21.5 182 94-308 20-226 (283)
123 KOG4175 Tryptophan synthase al 94.0 5.8 0.00013 39.6 17.6 159 96-283 30-214 (268)
124 PRK00507 deoxyribose-phosphate 94.0 7.5 0.00016 39.5 19.4 188 92-310 16-208 (221)
125 cd02810 DHOD_DHPD_FMN Dihydroo 94.0 5.8 0.00013 41.4 19.4 98 149-254 100-199 (289)
126 TIGR01769 GGGP geranylgeranylg 93.9 7.9 0.00017 38.9 19.6 174 98-307 11-202 (205)
127 cd00423 Pterin_binding Pterin 93.8 7.9 0.00017 40.0 19.7 125 92-245 18-164 (258)
128 PLN02951 Molybderin biosynthes 93.8 4.6 9.9E-05 44.2 18.7 169 93-274 88-264 (373)
129 COG2876 AroA 3-deoxy-D-arabino 93.4 0.7 1.5E-05 47.8 10.8 169 96-272 57-280 (286)
130 PRK12595 bifunctional 3-deoxy- 93.4 3.7 8.1E-05 44.8 17.1 175 96-311 130-325 (360)
131 cd00959 DeoC 2-deoxyribose-5-p 93.4 6.9 0.00015 38.9 17.8 184 94-309 13-202 (203)
132 TIGR02320 PEP_mutase phosphoen 93.4 1.8 4E-05 45.6 14.3 164 158-334 90-262 (285)
133 TIGR03581 EF_0839 conserved hy 93.4 3.6 7.9E-05 41.4 15.3 160 94-270 37-235 (236)
134 cd00947 TBP_aldolase_IIB Tagat 93.3 9.3 0.0002 40.2 19.2 183 94-309 20-225 (276)
135 PRK00164 moaA molybdenum cofac 93.1 3.2 6.9E-05 44.3 15.9 142 92-246 46-189 (331)
136 COG2896 MoaA Molybdenum cofact 92.9 4 8.6E-05 43.8 15.9 146 94-254 42-192 (322)
137 PF01261 AP_endonuc_2: Xylose 92.9 0.089 1.9E-06 51.1 3.4 165 104-290 1-196 (213)
138 TIGR03586 PseI pseudaminic aci 92.9 1.7 3.7E-05 46.7 13.3 140 104-272 103-253 (327)
139 cd00408 DHDPS-like Dihydrodipi 92.8 13 0.00029 38.5 23.3 195 94-332 14-216 (281)
140 COG1060 ThiH Thiamine biosynth 92.8 5.5 0.00012 43.6 17.2 231 91-334 86-350 (370)
141 PRK11613 folP dihydropteroate 92.8 9.2 0.0002 40.3 18.3 147 93-270 33-205 (282)
142 TIGR00167 cbbA ketose-bisphosp 92.7 13 0.00029 39.2 19.5 184 94-308 25-234 (288)
143 PRK07535 methyltetrahydrofolat 92.7 8.9 0.00019 39.9 18.0 155 95-275 22-189 (261)
144 TIGR00126 deoC deoxyribose-pho 92.6 12 0.00027 37.7 18.3 188 92-310 12-204 (211)
145 PRK09195 gatY tagatose-bisphos 92.6 14 0.00031 39.0 19.4 182 94-308 25-230 (284)
146 PF01081 Aldolase: KDPG and KH 92.6 2 4.3E-05 42.9 12.4 155 95-307 17-173 (196)
147 TIGR01496 DHPS dihydropteroate 92.5 0.91 2E-05 47.1 10.4 84 218-310 6-102 (257)
148 PF04055 Radical_SAM: Radical 92.5 2.1 4.5E-05 39.3 11.9 138 91-239 24-165 (166)
149 PTZ00413 lipoate synthase; Pro 92.5 6.8 0.00015 42.9 17.1 167 93-270 175-359 (398)
150 TIGR01858 tag_bisphos_ald clas 92.5 16 0.00034 38.6 19.5 182 94-308 23-228 (282)
151 PRK08610 fructose-bisphosphate 92.4 15 0.00033 38.8 19.3 184 94-308 25-231 (286)
152 PRK12857 fructose-1,6-bisphosp 92.3 16 0.00035 38.6 19.5 182 94-308 25-230 (284)
153 PRK00278 trpC indole-3-glycero 92.3 11 0.00025 39.0 18.2 166 97-307 69-237 (260)
154 TIGR03249 KdgD 5-dehydro-4-deo 92.1 18 0.00039 38.1 20.0 197 94-332 22-224 (296)
155 PLN02428 lipoic acid synthase 92.0 5.5 0.00012 43.3 15.8 162 93-270 128-311 (349)
156 COG0800 Eda 2-keto-3-deoxy-6-p 92.0 1.3 2.9E-05 44.5 10.2 155 95-307 22-178 (211)
157 TIGR02313 HpaI-NOT-DapA 2,4-di 91.9 13 0.00029 39.2 18.5 196 94-332 17-221 (294)
158 PRK12738 kbaY tagatose-bisphos 91.9 19 0.00042 38.1 19.8 182 94-308 25-230 (286)
159 smart00729 Elp3 Elongator prot 91.8 7.3 0.00016 37.3 15.4 149 93-251 28-187 (216)
160 TIGR01290 nifB nitrogenase cof 91.7 5.5 0.00012 44.6 16.1 177 93-287 58-267 (442)
161 PRK13396 3-deoxy-7-phosphohept 91.6 12 0.00027 40.6 17.9 181 92-313 109-311 (352)
162 TIGR01361 DAHP_synth_Bsub phos 91.4 4.6 0.0001 42.0 14.1 113 149-271 134-259 (260)
163 cd00377 ICL_PEPM Members of th 91.3 4 8.6E-05 42.0 13.4 109 194-307 52-177 (243)
164 cd00958 DhnA Class I fructose- 91.3 14 0.0003 37.3 17.3 183 92-308 15-212 (235)
165 TIGR02317 prpB methylisocitrat 91.2 3.1 6.7E-05 43.9 12.7 108 194-307 56-178 (285)
166 cd04722 TIM_phosphate_binding 91.2 14 0.0003 35.0 17.1 174 98-309 12-198 (200)
167 COG2513 PrpB PEP phosphonomuta 91.1 6.9 0.00015 41.2 14.9 207 104-334 31-256 (289)
168 TIGR00587 nfo apurinic endonuc 91.1 14 0.0003 38.5 17.4 206 101-334 14-250 (274)
169 PRK13398 3-deoxy-7-phosphohept 91.1 8.9 0.00019 40.1 15.8 111 149-272 136-262 (266)
170 TIGR00284 dihydropteroate synt 91.0 24 0.00053 40.2 20.3 178 98-310 165-351 (499)
171 TIGR01521 FruBisAldo_II_B fruc 91.0 18 0.0004 39.2 18.5 173 94-289 23-235 (347)
172 PRK11320 prpB 2-methylisocitra 91.0 3.9 8.4E-05 43.3 13.2 108 194-307 61-183 (292)
173 TIGR03569 NeuB_NnaB N-acetylne 90.9 6.4 0.00014 42.4 14.9 139 105-272 103-254 (329)
174 TIGR02666 moaA molybdenum cofa 90.8 5.3 0.00012 42.7 14.4 142 93-246 41-184 (334)
175 COG2513 PrpB PEP phosphonomuta 90.8 2.6 5.6E-05 44.3 11.3 108 194-307 61-183 (289)
176 TIGR01037 pyrD_sub1_fam dihydr 90.7 15 0.00032 38.7 17.4 95 151-254 94-192 (300)
177 cd00429 RPE Ribulose-5-phospha 90.6 16 0.00035 35.7 16.8 174 94-307 8-191 (211)
178 PF04131 NanE: Putative N-acet 90.6 1 2.2E-05 44.6 7.8 71 235-316 55-125 (192)
179 PF13714 PEP_mutase: Phosphoen 90.6 2.8 6E-05 43.1 11.4 109 194-307 52-172 (238)
180 smart00518 AP2Ec AP endonuclea 90.6 8.4 0.00018 39.6 15.2 202 102-334 14-246 (273)
181 TIGR01361 DAHP_synth_Bsub phos 90.6 8.8 0.00019 39.9 15.2 182 91-312 32-233 (260)
182 cd00952 CHBPH_aldolase Trans-o 90.4 2.2 4.7E-05 45.4 10.9 100 226-331 24-127 (309)
183 cd06556 ICL_KPHMT Members of t 90.4 2.3 5E-05 43.7 10.6 70 194-272 55-124 (240)
184 cd02940 DHPD_FMN Dihydropyrimi 90.4 4.6 9.9E-05 42.7 13.2 92 158-256 111-205 (299)
185 COG1082 IolE Sugar phosphate i 90.3 6.5 0.00014 40.1 14.1 211 94-335 14-243 (274)
186 PRK05835 fructose-bisphosphate 90.3 28 0.00061 37.2 20.6 165 94-288 24-214 (307)
187 cd00954 NAL N-Acetylneuraminic 90.3 26 0.00057 36.7 22.2 196 94-332 17-221 (288)
188 TIGR02319 CPEP_Pphonmut carbox 90.2 4.4 9.6E-05 42.9 12.7 108 194-307 60-182 (294)
189 PRK07259 dihydroorotate dehydr 90.0 24 0.00053 37.1 18.4 136 102-254 27-192 (301)
190 PRK12595 bifunctional 3-deoxy- 89.9 8.9 0.00019 41.9 15.2 114 149-272 227-353 (360)
191 TIGR01303 IMP_DH_rel_1 IMP deh 89.9 1.1 2.4E-05 50.5 8.5 74 231-313 224-297 (475)
192 PRK13813 orotidine 5'-phosphat 89.8 5.4 0.00012 39.8 12.6 190 95-331 13-209 (215)
193 cd00377 ICL_PEPM Members of th 89.8 20 0.00043 36.9 16.9 179 104-308 22-224 (243)
194 PRK15108 biotin synthase; Prov 89.8 2 4.3E-05 46.5 10.0 123 194-331 76-207 (345)
195 PRK15452 putative protease; Pr 89.7 2.9 6.2E-05 46.9 11.5 145 150-330 5-153 (443)
196 COG0274 DeoC Deoxyribose-phosp 89.7 11 0.00023 38.4 14.3 96 235-334 81-181 (228)
197 cd00951 KDGDH 5-dehydro-4-deox 89.6 30 0.00064 36.4 18.9 196 94-332 17-219 (289)
198 TIGR01210 conserved hypothetic 89.5 6.1 0.00013 42.2 13.4 90 159-258 154-258 (313)
199 COG2100 Predicted Fe-S oxidore 89.5 6.6 0.00014 42.0 13.0 151 82-244 124-284 (414)
200 PRK12737 gatY tagatose-bisphos 89.4 31 0.00066 36.5 18.3 192 85-309 14-231 (284)
201 TIGR02319 CPEP_Pphonmut carbox 89.4 7.5 0.00016 41.2 13.8 205 104-334 29-255 (294)
202 COG1856 Uncharacterized homolo 89.4 8.2 0.00018 39.3 13.1 138 101-251 100-252 (275)
203 PRK08673 3-deoxy-7-phosphohept 89.3 18 0.0004 39.1 16.8 181 95-312 104-301 (335)
204 TIGR00539 hemN_rel putative ox 89.3 8.7 0.00019 41.6 14.6 147 95-251 32-187 (360)
205 TIGR02668 moaA_archaeal probab 89.2 8.8 0.00019 40.3 14.3 139 93-246 38-179 (302)
206 PRK09234 fbiC FO synthase; Rev 89.2 29 0.00064 42.1 20.1 223 91-334 98-364 (843)
207 PRK07455 keto-hydroxyglutarate 89.1 24 0.00053 34.7 17.1 156 96-307 22-177 (187)
208 PRK13753 dihydropteroate synth 88.9 30 0.00065 36.5 17.6 30 92-121 19-48 (279)
209 cd00951 KDGDH 5-dehydro-4-deox 88.9 2.9 6.3E-05 44.0 10.3 107 220-332 9-119 (289)
210 TIGR00683 nanA N-acetylneurami 88.9 23 0.00049 37.3 17.0 195 94-332 17-220 (290)
211 PRK13585 1-(5-phosphoribosyl)- 88.9 13 0.00028 37.6 14.8 171 99-307 33-219 (241)
212 PRK03170 dihydrodipicolinate s 88.8 2.8 6.1E-05 44.0 10.2 106 220-331 10-120 (292)
213 PRK13399 fructose-1,6-bisphosp 88.8 40 0.00086 36.7 19.2 192 94-307 25-274 (347)
214 PF00701 DHDPS: Dihydrodipicol 88.7 5.9 0.00013 41.4 12.5 109 162-284 24-133 (289)
215 PRK04165 acetyl-CoA decarbonyl 88.7 38 0.00083 38.1 19.3 120 95-250 102-231 (450)
216 cd02933 OYE_like_FMN Old yello 88.7 8.7 0.00019 41.5 14.0 132 166-307 158-311 (338)
217 TIGR00538 hemN oxygen-independ 88.7 12 0.00025 42.0 15.5 131 111-251 102-238 (455)
218 PRK07084 fructose-bisphosphate 88.5 39 0.00084 36.4 20.2 186 94-307 31-265 (321)
219 TIGR00683 nanA N-acetylneurami 88.4 3.3 7.1E-05 43.7 10.3 102 225-332 15-121 (290)
220 TIGR01211 ELP3 histone acetylt 88.3 46 0.001 38.2 20.0 177 95-275 115-335 (522)
221 cd00952 CHBPH_aldolase Trans-o 88.2 39 0.00084 36.0 20.6 196 94-331 25-228 (309)
222 COG0826 Collagenase and relate 88.1 4.3 9.2E-05 44.1 11.1 98 158-276 15-114 (347)
223 cd02803 OYE_like_FMN_family Ol 88.1 12 0.00026 39.7 14.6 135 166-307 147-308 (327)
224 TIGR00735 hisF imidazoleglycer 88.1 23 0.0005 36.4 16.2 192 99-332 31-248 (254)
225 PRK11320 prpB 2-methylisocitra 87.7 17 0.00037 38.6 15.0 204 104-334 30-256 (292)
226 TIGR01859 fruc_bis_ald_ fructo 87.7 6.1 0.00013 41.6 11.7 94 203-307 4-101 (282)
227 cd00950 DHDPS Dihydrodipicolin 87.7 5 0.00011 41.9 11.1 107 220-332 9-120 (284)
228 PRK09249 coproporphyrinogen II 87.7 14 0.00031 41.4 15.4 134 110-253 101-240 (453)
229 cd04740 DHOD_1B_like Dihydroor 87.6 12 0.00025 39.4 13.9 163 95-272 99-280 (296)
230 TIGR02631 xylA_Arthro xylose i 87.6 5.2 0.00011 44.0 11.5 23 96-118 30-52 (382)
231 TIGR00510 lipA lipoate synthas 87.6 12 0.00027 39.7 14.0 159 95-267 91-268 (302)
232 PRK03620 5-dehydro-4-deoxygluc 87.4 4.1 8.9E-05 43.2 10.4 106 220-331 16-125 (303)
233 PF01116 F_bP_aldolase: Fructo 87.3 43 0.00093 35.4 18.8 183 94-308 24-233 (287)
234 PRK08318 dihydropyrimidine deh 87.2 14 0.00031 40.9 14.9 164 96-273 111-304 (420)
235 PRK09490 metH B12-dependent me 87.1 97 0.0021 39.3 25.7 237 95-359 157-450 (1229)
236 PLN02417 dihydrodipicolinate s 87.1 4.4 9.6E-05 42.4 10.3 106 221-332 11-121 (280)
237 TIGR03249 KdgD 5-dehydro-4-deo 87.1 4.4 9.5E-05 42.7 10.3 106 220-331 14-123 (296)
238 PRK13396 3-deoxy-7-phosphohept 87.1 12 0.00025 40.8 13.5 111 149-272 210-337 (352)
239 PF03102 NeuB: NeuB family; I 87.0 12 0.00025 38.7 13.0 41 265-312 163-205 (241)
240 cd00950 DHDPS Dihydrodipicolin 86.9 28 0.00061 36.2 16.2 149 94-266 17-173 (284)
241 cd00954 NAL N-Acetylneuraminic 86.9 4.6 9.9E-05 42.4 10.3 101 225-331 15-120 (288)
242 PRK13397 3-deoxy-7-phosphohept 86.8 13 0.00028 38.6 13.2 139 111-271 98-249 (250)
243 PRK06843 inosine 5-monophospha 86.8 2.7 5.9E-05 46.5 8.8 73 233-317 154-226 (404)
244 PRK06852 aldolase; Validated 86.7 13 0.00028 39.6 13.5 198 81-307 39-262 (304)
245 cd04731 HisF The cyclase subun 86.7 22 0.00048 36.1 15.0 196 98-331 27-241 (243)
246 TIGR02321 Pphn_pyruv_hyd phosp 86.7 15 0.00033 38.8 14.0 107 194-307 58-183 (290)
247 PRK05481 lipoyl synthase; Prov 86.7 18 0.00038 38.2 14.6 165 93-271 78-261 (289)
248 PRK05660 HemN family oxidoredu 86.6 14 0.00029 40.5 14.2 131 110-250 57-193 (378)
249 cd00408 DHDPS-like Dihydrodipi 86.6 5.2 0.00011 41.6 10.5 101 225-331 12-116 (281)
250 TIGR00674 dapA dihydrodipicoli 86.4 5.1 0.00011 41.9 10.4 102 225-332 13-118 (285)
251 PRK08673 3-deoxy-7-phosphohept 86.3 13 0.00028 40.2 13.4 114 149-272 202-328 (335)
252 cd02930 DCR_FMN 2,4-dienoyl-Co 86.3 14 0.0003 40.0 13.9 132 167-307 144-303 (353)
253 TIGR02313 HpaI-NOT-DapA 2,4-di 86.3 5 0.00011 42.4 10.2 90 220-311 9-103 (294)
254 COG0329 DapA Dihydrodipicolina 86.3 49 0.0011 35.1 21.5 196 95-332 22-224 (299)
255 TIGR03569 NeuB_NnaB N-acetylne 86.2 21 0.00046 38.4 15.1 95 205-311 124-224 (329)
256 PRK04147 N-acetylneuraminate l 86.2 4.8 0.00011 42.3 10.1 90 220-311 12-107 (293)
257 cd04733 OYE_like_2_FMN Old yel 86.2 7.7 0.00017 41.7 11.8 132 166-307 155-319 (338)
258 PRK13347 coproporphyrinogen II 86.0 7.6 0.00016 43.6 12.1 134 110-253 102-241 (453)
259 cd06557 KPHMT-like Ketopantoat 86.0 9.6 0.00021 39.6 11.9 138 102-274 23-193 (254)
260 PRK07565 dihydroorotate dehydr 86.0 17 0.00036 39.1 14.3 79 228-310 111-197 (334)
261 TIGR02317 prpB methylisocitrat 85.9 12 0.00027 39.5 12.8 205 104-334 26-251 (285)
262 PLN02424 ketopantoate hydroxym 85.9 20 0.00044 38.5 14.4 147 93-273 37-216 (332)
263 TIGR03551 F420_cofH 7,8-dideme 85.8 5.5 0.00012 42.9 10.5 78 226-308 68-156 (343)
264 cd04732 HisA HisA. Phosphorib 85.8 23 0.00049 35.6 14.4 173 97-307 28-216 (234)
265 PRK10481 hypothetical protein; 85.7 8.6 0.00019 39.2 11.1 135 79-258 57-195 (224)
266 COG0036 Rpe Pentose-5-phosphat 85.7 14 0.0003 37.5 12.4 116 163-307 74-194 (220)
267 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.6 22 0.00048 37.1 14.6 80 95-182 88-171 (275)
268 PF13714 PEP_mutase: Phosphoen 85.6 21 0.00045 36.8 14.0 175 104-308 22-217 (238)
269 COG0329 DapA Dihydrodipicolina 85.4 6.7 0.00015 41.6 10.7 87 221-309 14-105 (299)
270 TIGR03822 AblA_like_2 lysine-2 85.3 49 0.0011 35.4 17.3 163 93-276 117-297 (321)
271 PRK06801 hypothetical protein; 85.3 18 0.00038 38.3 13.6 96 203-309 6-103 (286)
272 PRK08446 coproporphyrinogen II 85.3 25 0.00054 38.0 15.2 129 111-251 51-185 (350)
273 PRK10605 N-ethylmaleimide redu 85.3 18 0.00038 39.5 14.1 130 168-307 167-318 (362)
274 PRK07226 fructose-bisphosphate 85.2 51 0.0011 34.2 17.0 197 95-332 36-249 (267)
275 PRK00311 panB 3-methyl-2-oxobu 85.2 13 0.00029 38.8 12.5 139 101-274 25-196 (264)
276 TIGR00222 panB 3-methyl-2-oxob 85.1 22 0.00047 37.2 13.9 142 101-274 25-195 (263)
277 PRK03170 dihydrodipicolinate s 85.0 15 0.00033 38.4 13.2 43 230-272 82-125 (292)
278 TIGR02026 BchE magnesium-proto 84.8 30 0.00066 39.3 16.3 163 94-272 221-390 (497)
279 PRK05799 coproporphyrinogen II 84.6 15 0.00032 40.0 13.2 84 165-250 101-185 (374)
280 PRK13745 anaerobic sulfatase-m 84.4 43 0.00093 37.0 16.9 147 93-250 46-200 (412)
281 cd01572 QPRTase Quinolinate ph 84.2 12 0.00025 39.2 11.7 130 203-355 107-245 (268)
282 cd04735 OYE_like_4_FMN Old yel 84.1 19 0.00041 39.0 13.7 135 168-307 152-310 (353)
283 COG0635 HemN Coproporphyrinoge 84.1 4.5 9.8E-05 45.0 9.0 147 95-250 67-223 (416)
284 PLN02858 fructose-bisphosphate 83.9 73 0.0016 41.0 20.5 194 85-308 1110-1329(1378)
285 TIGR01949 AroFGH_arch predicte 83.9 18 0.00039 37.3 12.9 192 77-308 20-225 (258)
286 cd04727 pdxS PdxS is a subunit 83.7 3.4 7.5E-05 43.3 7.4 67 234-314 77-143 (283)
287 PTZ00314 inosine-5'-monophosph 83.7 8.5 0.00018 43.8 11.2 70 233-311 242-311 (495)
288 TIGR00126 deoC deoxyribose-pho 83.6 35 0.00077 34.4 14.4 107 221-332 61-171 (211)
289 TIGR03586 PseI pseudaminic aci 83.2 6.9 0.00015 42.1 9.7 95 205-311 125-223 (327)
290 cd01568 QPRTase_NadC Quinolina 83.2 17 0.00036 38.0 12.4 112 227-354 124-245 (269)
291 PRK07107 inosine 5-monophospha 83.2 16 0.00035 41.6 13.1 141 92-251 235-381 (502)
292 PRK00112 tgt queuine tRNA-ribo 83.2 18 0.00039 39.6 13.0 95 218-320 183-278 (366)
293 PRK00115 hemE uroporphyrinogen 83.2 49 0.0011 35.6 16.4 41 97-137 185-233 (346)
294 COG3473 Maleate cis-trans isom 83.1 17 0.00037 36.6 11.5 138 100-274 56-204 (238)
295 PF00809 Pterin_bind: Pterin b 82.9 32 0.00069 34.5 13.8 151 92-270 13-189 (210)
296 PRK01130 N-acetylmannosamine-6 82.8 54 0.0012 32.8 15.8 157 96-307 21-199 (221)
297 cd03174 DRE_TIM_metallolyase D 82.8 20 0.00043 36.5 12.7 22 101-122 77-98 (265)
298 TIGR00674 dapA dihydrodipicoli 82.8 22 0.00047 37.3 13.1 98 166-273 25-123 (285)
299 PRK08508 biotin synthase; Prov 82.8 3.9 8.5E-05 42.8 7.5 69 194-267 40-110 (279)
300 COG0167 PyrD Dihydroorotate de 82.7 33 0.00071 36.7 14.4 168 94-273 105-292 (310)
301 COG3623 SgaU Putative L-xylulo 82.7 7.9 0.00017 39.6 9.1 148 90-269 13-174 (287)
302 TIGR01304 IMP_DH_rel_2 IMP deh 82.7 8 0.00017 42.4 10.0 89 201-308 119-214 (369)
303 PRK05628 coproporphyrinogen II 82.5 20 0.00043 39.1 13.2 91 158-250 102-194 (375)
304 COG0191 Fba Fructose/tagatose 82.5 70 0.0015 33.8 17.3 181 94-307 25-231 (286)
305 cd03315 MLE_like Muconate lact 82.5 63 0.0014 33.2 19.4 166 96-297 85-250 (265)
306 cd02801 DUS_like_FMN Dihydrour 82.4 19 0.00041 35.9 12.1 148 149-307 56-210 (231)
307 PRK12677 xylose isomerase; Pro 82.4 11 0.00024 41.4 11.1 19 100-118 33-51 (384)
308 PRK07565 dihydroorotate dehydr 82.3 33 0.00071 36.8 14.6 160 95-272 111-289 (334)
309 cd01320 ADA Adenosine deaminas 82.2 15 0.00033 38.9 11.9 123 172-306 85-213 (325)
310 PRK03620 5-dehydro-4-deoxygluc 82.2 22 0.00048 37.7 13.0 97 166-273 34-131 (303)
311 PRK06806 fructose-bisphosphate 82.1 72 0.0016 33.7 20.5 184 94-310 25-230 (281)
312 PF04273 DUF442: Putative phos 82.1 7.7 0.00017 35.1 8.1 78 206-288 19-96 (110)
313 COG0821 gcpE 1-hydroxy-2-methy 82.0 33 0.0007 37.0 13.7 140 97-241 35-190 (361)
314 PLN02334 ribulose-phosphate 3- 82.0 54 0.0012 33.1 15.3 167 99-307 21-199 (229)
315 PRK08227 autoinducer 2 aldolas 82.0 37 0.0008 35.5 14.2 120 161-308 99-224 (264)
316 TIGR01740 pyrF orotidine 5'-ph 82.0 40 0.00087 33.7 14.2 174 96-307 9-193 (213)
317 PRK00748 1-(5-phosphoribosyl)- 81.8 60 0.0013 32.5 15.8 148 98-274 30-190 (233)
318 cd04722 TIM_phosphate_binding 81.8 47 0.001 31.3 15.2 75 232-313 72-146 (200)
319 PRK11858 aksA trans-homoaconit 81.5 30 0.00065 37.9 14.1 61 202-263 146-208 (378)
320 cd00945 Aldolase_Class_I Class 81.5 51 0.0011 31.5 16.4 98 230-331 64-167 (201)
321 PRK06096 molybdenum transport 81.4 14 0.00031 39.0 11.0 131 203-354 110-254 (284)
322 PTZ00170 D-ribulose-5-phosphat 81.4 16 0.00035 37.1 11.2 95 227-334 15-114 (228)
323 cd01299 Met_dep_hydrolase_A Me 81.4 7.5 0.00016 41.2 9.2 71 228-308 117-198 (342)
324 PRK07360 FO synthase subunit 2 81.3 10 0.00023 41.3 10.4 104 224-332 87-209 (371)
325 PF03102 NeuB: NeuB family; I 81.1 11 0.00024 38.9 9.9 151 93-272 51-232 (241)
326 PRK00366 ispG 4-hydroxy-3-meth 80.9 28 0.00061 37.8 13.1 140 96-240 40-196 (360)
327 TIGR03849 arch_ComA phosphosul 80.9 15 0.00032 37.8 10.6 127 202-332 42-182 (237)
328 cd02940 DHPD_FMN Dihydropyrimi 80.8 17 0.00037 38.4 11.5 159 95-267 110-297 (299)
329 TIGR01334 modD putative molybd 80.7 17 0.00038 38.2 11.3 129 203-354 109-253 (277)
330 COG1244 Predicted Fe-S oxidore 80.6 44 0.00096 35.9 14.1 164 76-259 103-296 (358)
331 COG1830 FbaB DhnA-type fructos 80.6 33 0.00072 35.8 13.0 103 196-307 125-234 (265)
332 PF00701 DHDPS: Dihydrodipicol 80.5 11 0.00024 39.4 10.0 101 226-332 17-121 (289)
333 COG0167 PyrD Dihydroorotate de 80.5 54 0.0012 35.1 15.0 119 199-332 148-290 (310)
334 PF00682 HMGL-like: HMGL-like 80.4 25 0.00053 35.5 12.2 28 95-122 64-91 (237)
335 COG2089 SpsE Sialic acid synth 80.3 19 0.00041 38.7 11.3 140 104-271 116-265 (347)
336 TIGR01464 hemE uroporphyrinoge 80.1 16 0.00034 39.2 11.1 85 231-331 180-274 (338)
337 PLN02433 uroporphyrinogen deca 80.1 15 0.00032 39.7 11.0 86 231-331 179-273 (345)
338 PRK05581 ribulose-phosphate 3- 80.0 65 0.0014 31.8 16.8 174 94-307 12-195 (220)
339 PRK00208 thiG thiazole synthas 80.0 14 0.00029 38.3 9.9 166 102-307 25-201 (250)
340 cd01335 Radical_SAM Radical SA 79.9 52 0.0011 30.7 14.8 134 98-246 31-171 (204)
341 cd02932 OYE_YqiM_FMN Old yello 79.8 27 0.00059 37.5 12.9 132 167-307 161-317 (336)
342 PRK05904 coproporphyrinogen II 79.8 49 0.0011 35.9 14.9 91 158-250 97-189 (353)
343 cd04739 DHOD_like Dihydroorota 79.7 35 0.00076 36.6 13.6 164 95-272 109-287 (325)
344 COG0502 BioB Biotin synthase a 79.6 4.6 0.0001 43.5 6.8 116 190-316 80-205 (335)
345 COG0535 Predicted Fe-S oxidore 79.6 51 0.0011 34.6 14.8 142 93-250 46-192 (347)
346 cd04728 ThiG Thiazole synthase 79.6 16 0.00035 37.7 10.3 166 102-307 24-201 (248)
347 PLN02623 pyruvate kinase 79.6 1.3E+02 0.0028 35.0 20.3 155 94-272 275-439 (581)
348 PRK13111 trpA tryptophan synth 79.6 61 0.0013 33.7 14.9 130 166-314 32-177 (258)
349 PF02679 ComA: (2R)-phospho-3- 79.5 12 0.00026 38.7 9.4 141 174-332 38-194 (244)
350 PF04481 DUF561: Protein of un 79.4 43 0.00093 34.1 12.9 176 93-307 22-211 (242)
351 PRK07379 coproporphyrinogen II 79.1 23 0.00049 39.1 12.2 131 111-251 66-202 (400)
352 PRK07094 biotin synthase; Prov 79.1 37 0.00079 36.0 13.5 44 229-272 71-115 (323)
353 cd02810 DHOD_DHPD_FMN Dihydroo 79.0 37 0.0008 35.4 13.3 84 228-316 108-201 (289)
354 PRK11613 folP dihydropteroate 79.0 16 0.00034 38.6 10.4 84 218-310 21-117 (282)
355 cd04738 DHOD_2_like Dihydrooro 78.7 98 0.0021 33.1 18.2 26 229-254 214-239 (327)
356 PRK08883 ribulose-phosphate 3- 78.5 28 0.00061 35.3 11.7 115 163-307 71-192 (220)
357 cd00405 PRAI Phosphoribosylant 78.3 20 0.00044 35.4 10.6 163 150-355 2-171 (203)
358 COG1879 RbsB ABC-type sugar tr 78.3 92 0.002 32.6 17.9 206 92-315 44-253 (322)
359 cd03309 CmuC_like CmuC_like. P 78.1 9.2 0.0002 41.0 8.5 90 231-331 155-255 (321)
360 cd04739 DHOD_like Dihydroorota 78.1 34 0.00073 36.7 12.9 104 195-309 83-194 (325)
361 TIGR03234 OH-pyruv-isom hydrox 78.0 29 0.00062 35.2 11.9 111 161-288 15-146 (254)
362 TIGR02321 Pphn_pyruv_hyd phosp 78.0 66 0.0014 34.1 14.7 203 104-334 28-257 (290)
363 PRK07259 dihydroorotate dehydr 77.9 32 0.00069 36.2 12.5 105 194-309 74-188 (301)
364 cd04734 OYE_like_3_FMN Old yel 77.9 58 0.0013 35.2 14.7 83 168-250 149-248 (343)
365 cd04724 Tryptophan_synthase_al 77.9 87 0.0019 32.1 15.8 94 166-272 20-128 (242)
366 PRK08208 coproporphyrinogen II 77.8 14 0.00031 41.1 10.3 92 158-251 135-228 (430)
367 PF01702 TGT: Queuine tRNA-rib 77.8 19 0.00041 36.7 10.5 86 219-312 57-143 (238)
368 KOG3111 D-ribulose-5-phosphate 77.8 30 0.00066 34.5 11.1 109 201-332 99-215 (224)
369 PLN02495 oxidoreductase, actin 77.7 1.2E+02 0.0025 33.6 17.0 163 95-271 124-319 (385)
370 PRK09250 fructose-bisphosphate 77.6 57 0.0012 35.5 14.2 79 161-253 151-239 (348)
371 PRK06806 fructose-bisphosphate 77.5 24 0.00052 37.2 11.3 95 203-308 6-102 (281)
372 cd03315 MLE_like Muconate lact 77.5 25 0.00055 36.2 11.4 101 93-222 138-238 (265)
373 PRK12738 kbaY tagatose-bisphos 77.5 20 0.00043 37.9 10.6 101 203-314 6-110 (286)
374 TIGR00284 dihydropteroate synt 77.4 14 0.00031 42.0 10.2 121 224-365 160-280 (499)
375 PTZ00314 inosine-5'-monophosph 77.4 51 0.0011 37.6 14.6 132 96-252 239-374 (495)
376 PRK05718 keto-hydroxyglutarate 77.1 12 0.00026 37.8 8.6 85 206-308 8-92 (212)
377 PRK08444 hypothetical protein; 76.8 6.6 0.00014 42.7 7.1 77 224-309 76-167 (353)
378 PRK09195 gatY tagatose-bisphos 76.7 21 0.00046 37.7 10.6 101 203-314 6-110 (284)
379 TIGR00612 ispG_gcpE 1-hydroxy- 76.5 46 0.00099 36.0 12.9 140 96-240 32-187 (346)
380 PF09370 TIM-br_sig_trns: TIM- 76.3 59 0.0013 34.1 13.3 136 104-257 28-185 (268)
381 TIGR02990 ectoine_eutA ectoine 76.3 14 0.0003 38.0 8.9 92 163-274 109-206 (239)
382 PF02548 Pantoate_transf: Keto 76.2 31 0.00068 36.0 11.4 137 102-269 27-195 (261)
383 cd08210 RLP_RrRLP Ribulose bis 76.1 79 0.0017 34.6 15.1 188 94-289 137-352 (364)
384 PRK13523 NADPH dehydrogenase N 76.1 55 0.0012 35.4 13.8 131 167-307 149-302 (337)
385 PRK13210 putative L-xylulose 5 75.9 62 0.0013 33.2 13.9 122 161-288 17-156 (284)
386 PLN02417 dihydrodipicolinate s 75.9 45 0.00098 34.9 12.9 62 200-261 82-144 (280)
387 PRK01008 queuine tRNA-ribosylt 75.9 40 0.00087 37.0 12.7 87 218-313 199-286 (372)
388 PRK12581 oxaloacetate decarbox 75.8 49 0.0011 37.5 13.6 165 155-332 30-203 (468)
389 PLN02389 biotin synthase 75.7 13 0.00028 40.9 9.0 110 194-316 116-239 (379)
390 TIGR01362 KDO8P_synth 3-deoxy- 75.4 1.1E+02 0.0024 32.0 15.5 137 112-272 93-252 (258)
391 TIGR01858 tag_bisphos_ald clas 75.3 25 0.00054 37.1 10.6 101 203-314 4-108 (282)
392 PRK05198 2-dehydro-3-deoxyphos 75.3 71 0.0015 33.4 13.6 105 158-272 136-260 (264)
393 PRK09875 putative hydrolase; P 75.3 98 0.0021 32.8 15.2 147 101-272 107-272 (292)
394 PRK09997 hydroxypyruvate isome 75.2 30 0.00064 35.4 11.2 110 161-288 16-147 (258)
395 cd07944 DRE_TIM_HOA_like 4-hyd 75.2 82 0.0018 32.8 14.5 57 205-262 142-202 (266)
396 PRK06252 methylcobalamin:coenz 75.2 12 0.00026 40.0 8.5 84 232-330 181-272 (339)
397 PRK09613 thiH thiamine biosynt 75.2 87 0.0019 35.6 15.5 117 193-316 114-246 (469)
398 PRK12737 gatY tagatose-bisphos 75.2 27 0.00059 36.9 10.9 102 203-315 6-111 (284)
399 TIGR03471 HpnJ hopanoid biosyn 75.2 55 0.0012 36.8 14.2 160 94-272 226-390 (472)
400 PF08502 LeuA_dimer: LeuA allo 75.1 22 0.00047 32.9 9.2 52 476-527 75-129 (133)
401 cd04747 OYE_like_5_FMN Old yel 75.1 53 0.0011 35.9 13.5 135 167-307 151-325 (361)
402 cd04741 DHOD_1A_like Dihydroor 75.0 90 0.002 32.9 14.9 162 97-271 102-292 (294)
403 PRK10076 pyruvate formate lyas 75.0 11 0.00023 38.1 7.6 71 194-268 19-89 (213)
404 PRK05286 dihydroorotate dehydr 75.0 1.3E+02 0.0028 32.6 18.3 27 228-254 222-248 (344)
405 cd07943 DRE_TIM_HOA 4-hydroxy- 74.8 59 0.0013 33.6 13.3 59 205-264 145-206 (263)
406 PRK06294 coproporphyrinogen II 74.7 17 0.00038 39.6 9.7 91 158-250 97-189 (370)
407 PRK00694 4-hydroxy-3-methylbut 74.6 1.6E+02 0.0035 34.1 17.2 122 94-223 41-209 (606)
408 cd00739 DHPS DHPS subgroup of 74.6 24 0.00052 36.6 10.2 84 218-310 7-103 (257)
409 PRK00115 hemE uroporphyrinogen 74.4 6.2 0.00013 42.5 6.1 36 231-266 186-222 (346)
410 PLN02433 uroporphyrinogen deca 74.4 1.1E+02 0.0023 33.0 15.7 40 98-137 179-226 (345)
411 PRK02227 hypothetical protein; 74.4 46 0.00099 34.3 11.9 75 238-315 14-92 (238)
412 PRK04147 N-acetylneuraminate l 74.1 1.2E+02 0.0026 31.8 22.4 193 95-332 21-222 (293)
413 PF04551 GcpE: GcpE protein; 74.1 98 0.0021 33.8 14.7 138 95-242 28-198 (359)
414 TIGR00078 nadC nicotinate-nucl 73.9 39 0.00084 35.3 11.6 131 203-355 103-241 (265)
415 COG1856 Uncharacterized homolo 73.9 1.1E+02 0.0024 31.4 20.5 209 96-329 40-271 (275)
416 PRK04180 pyridoxal biosynthesi 73.8 15 0.00032 38.9 8.3 62 235-310 87-148 (293)
417 COG0469 PykF Pyruvate kinase [ 73.8 99 0.0021 35.1 15.4 160 94-273 172-338 (477)
418 PF01261 AP_endonuc_2: Xylose 73.6 13 0.00027 35.9 7.6 114 168-290 3-137 (213)
419 TIGR00430 Q_tRNA_tgt tRNA-guan 73.4 60 0.0013 35.6 13.4 95 218-320 179-274 (368)
420 cd04729 NanE N-acetylmannosami 73.4 1E+02 0.0022 30.7 15.0 159 96-307 25-203 (219)
421 cd00288 Pyruvate_Kinase Pyruva 73.4 1.7E+02 0.0037 33.3 19.0 159 94-273 171-336 (480)
422 PTZ00170 D-ribulose-5-phosphat 73.3 1.1E+02 0.0024 31.0 18.1 191 96-331 17-218 (228)
423 PRK08207 coproporphyrinogen II 73.0 99 0.0022 35.2 15.5 85 165-251 271-356 (488)
424 cd03307 Mta_CmuA_like MtaA_Cmu 72.9 14 0.0003 39.4 8.3 85 231-330 171-263 (326)
425 PRK09196 fructose-1,6-bisphosp 72.9 33 0.00072 37.3 11.0 100 203-312 6-109 (347)
426 TIGR00449 tgt_general tRNA-gua 72.9 53 0.0012 36.0 12.8 93 218-319 178-272 (367)
427 TIGR00343 pyridoxal 5'-phospha 72.9 19 0.00041 38.0 8.8 69 235-320 80-148 (287)
428 PF02679 ComA: (2R)-phospho-3- 72.8 4.7 0.0001 41.6 4.4 145 106-268 30-194 (244)
429 PRK07315 fructose-bisphosphate 72.8 34 0.00075 36.2 11.1 96 203-308 6-104 (293)
430 cd00953 KDG_aldolase KDG (2-ke 72.8 32 0.00069 36.0 10.8 83 220-307 9-95 (279)
431 cd00947 TBP_aldolase_IIB Tagat 72.5 33 0.00072 36.1 10.7 101 204-315 2-106 (276)
432 TIGR01521 FruBisAldo_II_B fruc 72.4 35 0.00075 37.1 11.0 100 203-312 4-107 (347)
433 TIGR01302 IMP_dehydrog inosine 72.4 14 0.0003 41.6 8.4 72 231-311 223-294 (450)
434 PRK06354 pyruvate kinase; Prov 72.2 2E+02 0.0044 33.6 18.1 160 93-272 174-340 (590)
435 cd06556 ICL_KPHMT Members of t 72.2 74 0.0016 32.8 13.0 132 103-267 24-188 (240)
436 TIGR03849 arch_ComA phosphosul 72.1 30 0.00065 35.6 10.0 155 105-282 16-191 (237)
437 PRK09197 fructose-bisphosphate 72.0 1.6E+02 0.0034 32.2 20.2 189 94-307 28-276 (350)
438 PRK01060 endonuclease IV; Prov 72.0 53 0.0012 33.8 12.2 123 159-289 11-150 (281)
439 TIGR00167 cbbA ketose-bisphosp 71.9 33 0.00071 36.3 10.6 105 202-315 5-114 (288)
440 PRK13306 ulaD 3-keto-L-gulonat 71.8 41 0.00089 33.9 10.9 94 95-215 13-107 (216)
441 PLN02461 Probable pyruvate kin 71.8 1.9E+02 0.0042 33.2 18.9 160 94-273 190-356 (511)
442 TIGR00007 phosphoribosylformim 71.8 1.1E+02 0.0025 30.5 16.4 145 99-273 29-188 (230)
443 TIGR00676 fadh2 5,10-methylene 71.7 1.3E+02 0.0029 31.3 15.5 161 98-272 15-182 (272)
444 PRK05283 deoxyribose-phosphate 71.7 1.3E+02 0.0029 31.4 14.7 159 93-268 78-245 (257)
445 TIGR02082 metH 5-methyltetrahy 71.7 2.9E+02 0.0063 35.2 22.9 213 95-332 141-409 (1178)
446 PRK09058 coproporphyrinogen II 71.4 67 0.0015 36.0 13.6 112 103-220 165-299 (449)
447 PRK08185 hypothetical protein; 71.2 31 0.00067 36.5 10.2 98 204-312 2-102 (283)
448 COG1453 Predicted oxidoreducta 71.1 40 0.00087 36.9 11.0 109 93-215 29-144 (391)
449 cd00381 IMPDH IMPDH: The catal 71.1 22 0.00048 38.2 9.3 70 233-311 95-164 (325)
450 PRK05848 nicotinate-nucleotide 71.1 44 0.00095 35.1 11.2 113 227-355 125-248 (273)
451 TIGR00222 panB 3-methyl-2-oxob 70.9 52 0.0011 34.5 11.6 98 169-284 31-135 (263)
452 PRK09722 allulose-6-phosphate 70.9 30 0.00064 35.4 9.7 121 163-307 72-194 (229)
453 PF01116 F_bP_aldolase: Fructo 70.8 13 0.00028 39.3 7.3 105 201-316 3-111 (287)
454 PRK03906 mannonate dehydratase 70.7 69 0.0015 35.4 13.1 47 184-230 65-115 (385)
455 PRK08599 coproporphyrinogen II 70.4 28 0.00061 37.9 10.1 84 165-250 102-186 (377)
456 cd07941 DRE_TIM_LeuA3 Desulfob 70.4 79 0.0017 33.0 13.0 18 104-121 84-101 (273)
457 PRK05835 fructose-bisphosphate 70.2 46 0.00099 35.6 11.2 102 203-314 5-110 (307)
458 cd00717 URO-D Uroporphyrinogen 70.0 1.6E+02 0.0034 31.5 15.6 42 96-137 175-224 (335)
459 PRK06247 pyruvate kinase; Prov 69.8 2E+02 0.0044 32.7 17.5 156 94-273 170-332 (476)
460 TIGR01037 pyrD_sub1_fam dihydr 69.6 1.2E+02 0.0027 31.7 14.5 164 94-272 99-283 (300)
461 cd00959 DeoC 2-deoxyribose-5-p 69.6 1.2E+02 0.0026 30.0 17.6 101 228-332 66-170 (203)
462 PTZ00372 endonuclease 4-like p 69.5 1.9E+02 0.0042 32.3 16.3 15 318-332 365-379 (413)
463 cd07948 DRE_TIM_HCS Saccharomy 69.5 80 0.0017 32.8 12.8 60 203-263 143-204 (262)
464 TIGR01501 MthylAspMutase methy 69.4 1E+02 0.0022 29.0 12.2 33 100-135 18-50 (134)
465 cd02803 OYE_like_FMN_family Ol 69.2 48 0.001 35.2 11.4 79 233-313 143-251 (327)
466 TIGR01463 mtaA_cmuA methyltran 69.2 17 0.00038 38.8 8.1 73 231-308 180-260 (340)
467 cd00717 URO-D Uroporphyrinogen 69.0 13 0.00029 39.6 7.1 36 231-266 177-213 (335)
468 cd00958 DhnA Class I fructose- 68.9 32 0.0007 34.7 9.6 83 227-310 72-163 (235)
469 PRK05567 inosine 5'-monophosph 68.9 29 0.00063 39.4 10.1 70 233-311 229-298 (486)
470 PRK13753 dihydropteroate synth 68.9 28 0.0006 36.8 9.1 76 224-309 17-102 (279)
471 cd06557 KPHMT-like Ketopantoat 68.8 69 0.0015 33.3 12.0 90 170-272 29-126 (254)
472 PRK09057 coproporphyrinogen II 68.7 1.1E+02 0.0023 33.6 14.2 92 158-252 98-191 (380)
473 PRK13399 fructose-1,6-bisphosp 68.7 45 0.00098 36.3 11.0 101 203-313 6-110 (347)
474 PRK07998 gatY putative fructos 68.6 44 0.00095 35.4 10.6 99 203-312 6-108 (283)
475 PRK14340 (dimethylallyl)adenos 68.4 1.3E+02 0.0028 33.8 15.0 142 93-249 176-333 (445)
476 PRK14040 oxaloacetate decarbox 68.3 64 0.0014 37.7 12.8 142 156-307 23-172 (593)
477 PRK13347 coproporphyrinogen II 68.3 81 0.0018 35.4 13.4 111 102-218 153-284 (453)
478 PRK05799 coproporphyrinogen II 68.2 99 0.0022 33.5 13.8 112 102-218 100-232 (374)
479 PRK12330 oxaloacetate decarbox 68.1 59 0.0013 37.1 12.2 144 155-307 22-172 (499)
480 COG0413 PanB Ketopantoate hydr 67.9 1.1E+02 0.0024 31.9 12.9 144 100-270 24-195 (268)
481 TIGR03700 mena_SCO4494 putativ 67.7 17 0.00036 39.4 7.6 79 225-308 76-165 (351)
482 COG0191 Fba Fructose/tagatose 67.7 37 0.00081 35.8 9.7 117 204-334 7-129 (286)
483 PRK05904 coproporphyrinogen II 67.6 66 0.0014 34.9 12.2 113 102-220 104-233 (353)
484 PRK11572 copper homeostasis pr 67.3 1.6E+02 0.0035 30.6 17.6 171 104-312 14-200 (248)
485 PRK05927 hypothetical protein; 67.3 14 0.0003 40.2 6.8 76 225-307 73-161 (350)
486 cd02071 MM_CoA_mut_B12_BD meth 67.3 98 0.0021 28.0 13.3 101 208-331 21-121 (122)
487 cd00452 KDPG_aldolase KDPG and 67.0 61 0.0013 31.7 10.8 68 228-308 13-81 (190)
488 PF03932 CutC: CutC family; I 66.9 1.4E+02 0.003 30.0 13.2 171 104-310 13-199 (201)
489 COG0299 PurN Folate-dependent 66.9 45 0.00097 33.4 9.5 91 205-306 41-131 (200)
490 PRK08610 fructose-bisphosphate 66.9 53 0.0011 34.8 10.8 103 203-314 6-113 (286)
491 TIGR02660 nifV_homocitr homoci 66.8 1E+02 0.0022 33.6 13.5 59 203-262 144-204 (365)
492 PRK07379 coproporphyrinogen II 66.7 91 0.002 34.4 13.2 113 102-220 116-250 (400)
493 TIGR03572 WbuZ glycosyl amidat 66.5 1.5E+02 0.0032 29.8 14.7 146 98-273 30-196 (232)
494 TIGR00737 nifR3_yhdG putative 66.4 1.3E+02 0.0028 31.9 14.0 144 154-309 69-221 (319)
495 cd07945 DRE_TIM_CMS Leptospira 66.3 1.3E+02 0.0029 31.5 13.8 62 202-264 148-212 (280)
496 PRK00311 panB 3-methyl-2-oxobu 66.1 65 0.0014 33.7 11.2 91 169-272 31-129 (264)
497 TIGR01182 eda Entner-Doudoroff 66.0 73 0.0016 32.0 11.1 68 228-307 17-84 (204)
498 PRK06252 methylcobalamin:coenz 65.9 1.9E+02 0.0041 30.8 16.6 139 100-271 182-335 (339)
499 cd04726 KGPDC_HPS 3-Keto-L-gul 65.8 1.4E+02 0.0029 29.1 15.7 167 151-353 4-175 (202)
500 TIGR01163 rpe ribulose-phospha 65.8 1.1E+02 0.0024 29.8 12.6 61 235-307 70-130 (210)
No 1
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=6.7e-135 Score=1136.06 Aligned_cols=566 Identities=82% Similarity=1.205 Sum_probs=529.3
Q ss_pred cccCCCCCCCCCCcccCCCCCcCCCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh
Q 007056 45 SCSLQKPPPSLYPRITASRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK 124 (620)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~ 124 (620)
.|+....++......|++||.|+|+.+++|++|+|+|||||||+|++|..||+++|++|+++|+++||++||+|||.+||
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp 134 (632)
T PLN02321 55 ASSALAASPSRPQVARRPRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASP 134 (632)
T ss_pred hhhccCCCcccccccccCCcccccccCCCCCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCc
Confidence 45555555667777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHH
Q 007056 125 EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIAR 204 (620)
Q Consensus 125 ~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~ 204 (620)
+|+++++.|++.+.+.+..+ ++++.||+|+|++++||+++++++.+++.++||+|+++||+|+++++++|++|+++++.
T Consensus 135 ~D~e~vr~i~~~~~~~v~~~-~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~ 213 (632)
T PLN02321 135 DDLEAVKTIAKEVGNEVDED-GYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIAR 213 (632)
T ss_pred cHHHHHHHHHHhcccCCCcc-ccceeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHH
Confidence 99999999988655544433 67789999999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEe
Q 007056 205 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 284 (620)
Q Consensus 205 ~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H 284 (620)
++|++||++|+..|+|+|||++|++++|+.++++++.++||++|+||||+|+++|++++++|+.+++++|+.++++|++|
T Consensus 214 ~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH 293 (632)
T PLN02321 214 DMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTH 293 (632)
T ss_pred HHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 99999999998669999999999999999999999999999999999999999999999999999999987666889999
Q ss_pred cCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCC
Q 007056 285 CQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLH 364 (620)
Q Consensus 285 ~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~ 364 (620)
||||+|||+||+++|+++||++||+||||||||+||++||+|+++|+.+++..++|+.|++|+++|+++|++|++++|++
T Consensus 294 ~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~ 373 (632)
T PLN02321 294 CQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQ 373 (632)
T ss_pred eCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999876533468999999999999999999999999
Q ss_pred CCCCCcccCccceeeeccccccccccCCccccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHH
Q 007056 365 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIF 444 (620)
Q Consensus 365 v~~~~pivG~naF~h~sGiH~dgi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~ 444 (620)
+++||||||+|+|+|||||||||++|||.+||||+||+||++|.++.+|+|||||||++|+++|+++||+++++++.+++
T Consensus 374 v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~Pe~VG~~r~~~~~i~lgk~SGr~~v~~~L~~lG~~l~~~~~~~~~ 453 (632)
T PLN02321 374 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLFRGNDAGIVLGKLSGRHALKSRLKELGYELDDDELDDVF 453 (632)
T ss_pred CCCCcccccccceehhcCccHHHHccCcccccccCHHHhCCcccccceecccccccHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998887778899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHhcCCcceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHH
Q 007056 445 WHFKAVAEQKKRVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVD 524 (620)
Q Consensus 445 ~~vk~~a~~~~~v~~~el~~L~~~~~~~~~~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~ 524 (620)
++||+++++++.++++||+.|+++.+...++.|+|.+|+|.++....++|+|++..+||++++.+++|||||||+++||+
T Consensus 454 ~~vk~la~~~~~v~d~dl~~l~~~~~~~~~~~~~l~~~~v~~~~~~~~~a~v~l~~~~g~~~~~~a~G~GPvdA~~~Al~ 533 (632)
T PLN02321 454 KRFKAVAEKKKGVTDEDLIALVSDEVFQPEVVWKLLDLQVTCGTLGLSTATVKLIGPDGVEHIACSVGTGPVDAAYKAVD 533 (632)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhccCCCceEEEEEEEEECCCCCcEEEEEEEeeCCEEEEEEEEecCHHHHHHHHHH
Confidence 99999999999999999999999998877778999999999998888999999975699999999999999999999999
Q ss_pred HhhcCCceeeeeeeeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhhccc
Q 007056 525 LIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFK 604 (620)
Q Consensus 525 ~~~~~~~~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~~ 604 (620)
++++.+++|.||+++++++|+||+|+++|.|+.++..+.+|++.|+..++.|||+|+|+||++||++||++|+||++.++
T Consensus 534 ~~~~~~~~L~dY~v~~v~~g~da~a~v~V~i~~~~~~~~~~~~~~~~~~~~~~g~G~~~Dii~AS~~A~~~a~n~~~~~~ 613 (632)
T PLN02321 534 LIVKEPVTLLEYSMNAVTEGIDAIATTRVVIRGENSYSSTHAQTGESVQRTFSGSGADMDIVVSSVRAYVSALNKMLGFK 613 (632)
T ss_pred HhhCCCCEEEEEEEEccCCCCCceEEEEEEEEECCCcccccccccccCCCEEEEEEeCcCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999765555678887765679999999999999999999999999999866
Q ss_pred CcCCcCC
Q 007056 605 DQLPAKD 611 (620)
Q Consensus 605 ~~~~~~~ 611 (620)
.....+.
T Consensus 614 ~~~~~~~ 620 (632)
T PLN02321 614 EASKAKS 620 (632)
T ss_pred hhhcccc
Confidence 6554443
No 2
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=1.9e-122 Score=1022.26 Aligned_cols=493 Identities=57% Similarity=0.869 Sum_probs=468.7
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeec
Q 007056 76 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 155 (620)
Q Consensus 76 ~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 155 (620)
+|+|+|||||||+|++|++|++++|++|++.|+++||++||+|||.+++.|+++++.|++... .+.+++|+
T Consensus 1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~---------~~~i~al~ 71 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK---------NPRVCGLA 71 (494)
T ss_pred CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC---------CCEEEEEc
Confidence 489999999999999999999999999999999999999999999999999999999986532 26899999
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH
Q 007056 156 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 156 r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~ 235 (620)
|++++||+++++++..++.++|++|+++||+|+++++++|++|+++++.+++++++++|.. |.|++||++|+|++|+.+
T Consensus 72 r~~~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~-v~f~~Ed~~r~d~~~l~~ 150 (494)
T TIGR00973 72 RCVEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD-VEFSCEDAGRTEIPFLAR 150 (494)
T ss_pred CCCHHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEcCCCCCCCHHHHHH
Confidence 9999999999999988899999999999999999999999999999999999999999985 999999999999999999
Q ss_pred HHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccccc
Q 007056 236 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 315 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlG 315 (620)
+++++.++||++|+||||+|+++|++++++|+.+++++|..++++|++|||||+|||+||+++|+++||++||+|++|||
T Consensus 151 ~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlG 230 (494)
T TIGR00973 151 IVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG 230 (494)
T ss_pred HHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeeccc
Confidence 99999999999999999999999999999999999999866568999999999999999999999999999999999999
Q ss_pred CCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCccc
Q 007056 316 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 395 (620)
Q Consensus 316 ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~~Y 395 (620)
||+||++||+|+++|+.+.+ .+|+.+++|++.|.++++++++++|+++++++||||+|||+|||||||||++|||.+|
T Consensus 231 ERaGNa~le~vv~~L~~~~~--~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~h~sGiH~dgi~k~~~~Y 308 (494)
T TIGR00973 231 ERAGNAALEEVVMALKVRKD--FLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFAHESGIHQDGVLKNKETY 308 (494)
T ss_pred ccccCccHHHHHHHHHHhcc--cCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccc
Confidence 99999999999999997532 2488999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHhc-CCc
Q 007056 396 EIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIF-QPE 474 (620)
Q Consensus 396 e~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~~v~~~el~~L~~~~~~-~~~ 474 (620)
|||+|++||++++ +|+|||||||++|+++|+++|++++++++.+++++||+++++++.++++||+.|+.+.+. ...
T Consensus 309 e~~~Pe~vG~~~~---~i~lg~~SG~~~i~~~l~~~g~~l~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~~~~~~~ 385 (494)
T TIGR00973 309 EIMSPEDIGLTAE---QLVLGKHSGRHAFKDRLEELGFKLDDEELDKLFEKFKELADKKKEVTDEDLEALVFEEKRQEPE 385 (494)
T ss_pred cCCCHHHcCCcce---eEEecccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccccC
Confidence 9999999997542 599999999999999999999999999999999999999999889999999999988886 335
Q ss_pred ceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhhcCCceeeeeeeeecCCCCCceEEEEEE
Q 007056 475 VVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVL 554 (620)
Q Consensus 475 ~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~~~~~L~dY~v~av~~G~dA~a~~~V~ 554 (620)
++|+|.+|+|.+++...++|+|++. ++|++++.+++|||||||+++||+++++.+++|.||++|++++|+||+++++|+
T Consensus 386 ~~~~l~~~~v~~~~~~~~~a~v~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~l~dy~~~~~~~gt~a~~~v~i~ 464 (494)
T TIGR00973 386 EGYKLLHFQVHSGTNQVPTATVKLK-NGGEKREAAATGNGPVDAVYKAINRALGIEVELLEYSITAVGEGKDALGQVDVV 464 (494)
T ss_pred CcEEEEEEEEEECCCCCcEEEEEEE-ECCEEEEEEEEecCHHHHHHHHHHHHhCCCCEEEEEEEECCCCCCCeEEEEEEE
Confidence 6899999999999777899999998 899999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHH
Q 007056 555 IRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALN 598 (620)
Q Consensus 555 i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N 598 (620)
++. +++.|||+|+|+||++||++||++|+|
T Consensus 465 ~~~--------------~~~~~~~~g~~~dii~As~~A~~~a~N 494 (494)
T TIGR00973 465 LRH--------------NGVKYSGRGVATDIVEASAKAYLNALN 494 (494)
T ss_pred EEe--------------CCeEEEEEEeCcCHHHHHHHHHHHhhC
Confidence 984 368999999999999999999999998
No 3
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=2.8e-122 Score=1026.62 Aligned_cols=504 Identities=56% Similarity=0.840 Sum_probs=477.5
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEe
Q 007056 74 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 74 ~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
|++|+|+|||||||+|++|+.||+++|++|++.|+++||++||+|||.++|+|+++++++++... .+.+++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~---------~~~i~a 72 (513)
T PRK00915 2 MDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVK---------NSTVCG 72 (513)
T ss_pred CCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCC---------CCEEEE
Confidence 45699999999999999999999999999999999999999999999999999999999987532 258999
Q ss_pred ecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHH
Q 007056 154 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 233 (620)
Q Consensus 154 ~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l 233 (620)
|+|++.+||++++++++.++.++|++|+++||+|+++++|+|++|+++++.+++++||++|.+ |+|++||++|+|++|+
T Consensus 73 ~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~r~d~~~l 151 (513)
T PRK00915 73 LARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD-VEFSAEDATRTDLDFL 151 (513)
T ss_pred EccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 9999999999999999
Q ss_pred HHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccc
Q 007056 234 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 313 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~G 313 (620)
.++++++.++||++|+||||+|+++|++++++|+.+++++|+.++++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~G 231 (513)
T PRK00915 152 CRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTING 231 (513)
T ss_pred HHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeec
Confidence 99999999999999999999999999999999999999998655689999999999999999999999999999999999
Q ss_pred ccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCc
Q 007056 314 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKG 393 (620)
Q Consensus 314 lGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~ 393 (620)
||||+||++||+|+++|+.+.+ .+|+.+++|+++|.+++++|++++|+++++++||||+|+|+|||||||||++|||.
T Consensus 232 lGERaGNa~lE~vv~~L~~~~~--~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~h~sGiH~dgi~k~~~ 309 (513)
T PRK00915 232 IGERAGNAALEEVVMALKTRKD--IYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGIHQDGVLKNRE 309 (513)
T ss_pred ccccccCccHHHHHHHHHhhhc--ccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHHhccchhHHHHcCCcc
Confidence 9999999999999999997532 23889999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHhc-C
Q 007056 394 TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIF-Q 472 (620)
Q Consensus 394 ~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~~v~~~el~~L~~~~~~-~ 472 (620)
+||||+|++||+++ ++|+||+||||++|+++|+++|++++++++.+++++||+++++++.++++||+.|+++.+. .
T Consensus 310 ~Ye~~~Pe~vG~~~---~~i~lg~~SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~~~~~ 386 (513)
T PRK00915 310 TYEIMTPESVGLKA---NRLVLGKHSGRHAFKHRLEELGYKLSDEELDKAFERFKELADKKKEVFDEDLEALVEDETQQE 386 (513)
T ss_pred cccccCHHHcCCcc---eEEEeccccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHhccc
Confidence 99999999999882 2699999999999999999999999999999999999999999889999999999999887 5
Q ss_pred CcceEEEeeEEEEeccCCeeEEEEEE-EccCCeEEEEEEEeCCHHHHHHHHHHHhhcCCceeeeeeeeecCCCCCceEEE
Q 007056 473 PEVVWKLLDMQVTCGTLGLSTATVKL-MDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGIDAIATT 551 (620)
Q Consensus 473 ~~~~~~L~~~~v~~g~~~~~~AtV~l-~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~~~~~L~dY~v~av~~G~dA~a~~ 551 (620)
..++|+|++|+|.++....++|+|++ . ++|++++.+++|||||||+++||+++++.+++|.||++|++++|+||++.+
T Consensus 387 ~~~~~~l~~~~v~~~~~~~~~a~v~~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~L~dy~v~~~~~gt~a~~~v 465 (513)
T PRK00915 387 EPEHYKLESLQVQSGSSGTPTATVKLRD-IDGEEKEEAATGNGPVDAVYNAINRIVGSDIELLEYSVNAITGGTDALGEV 465 (513)
T ss_pred CCccEEEEEEEEEECCCCceEEEEEEEE-ECCEEEEEEEecCccHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCeEEEE
Confidence 66789999999999877789999999 7 899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhhcccCcC
Q 007056 552 RVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFKDQL 607 (620)
Q Consensus 552 ~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~~~~~ 607 (620)
+|+++. +++.|||+|+|+||++||++||++|+|+++..++..
T Consensus 466 ~I~~~~--------------~~~~~~g~g~~~dIi~AS~~A~i~a~n~~~~~~~~~ 507 (513)
T PRK00915 466 TVRLEY--------------DGRIVHGRGADTDIVEASAKAYLNALNKLLRAKEVA 507 (513)
T ss_pred EEEEEe--------------CCeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999984 368999999999999999999999999998865543
No 4
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=3.2e-121 Score=1010.34 Aligned_cols=484 Identities=46% Similarity=0.668 Sum_probs=460.9
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeec
Q 007056 76 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 155 (620)
Q Consensus 76 ~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 155 (620)
+|+|+|||||||+|++|++|+.++|++|++.|+++||++||+|||.++++|+++++.+.+.. +.+.+++|+
T Consensus 2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~---------~~~~i~a~~ 72 (488)
T PRK09389 2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEG---------LNAEICSFA 72 (488)
T ss_pred ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcC---------CCcEEEeec
Confidence 48999999999999999999999999999999999999999999999999999999998742 236899999
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH
Q 007056 156 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 156 r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~ 235 (620)
|++++||++++++ |.+.||+|+++||+|+++++++|++|+++++.+++++|+++|.. |+|++||++|++++|+.+
T Consensus 73 r~~~~di~~a~~~----g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~~~~ed~~r~~~~~l~~ 147 (488)
T PRK09389 73 RAVKVDIDAALEC----DVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLI-VELSGEDASRADLDFLKE 147 (488)
T ss_pred ccCHHHHHHHHhC----CcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEeeCCCCCHHHHHH
Confidence 9999999998875 88999999999999999999999999999999999999999985 999999999999999999
Q ss_pred HHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccccc
Q 007056 236 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 315 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlG 315 (620)
+++++.++|+++|+||||+|+++|++++++|+.+++.++ ++|++|||||+|||+||+++|+++||++||+|++|||
T Consensus 148 ~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~----v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiG 223 (488)
T PRK09389 148 LYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK----GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIG 223 (488)
T ss_pred HHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC----CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEccccc
Confidence 999999999999999999999999999999999998763 7899999999999999999999999999999999999
Q ss_pred CCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCccc
Q 007056 316 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 395 (620)
Q Consensus 316 ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~~Y 395 (620)
||+||++||+|+++|+.. +|+.+++|++.|.++|+++++++|+++++|+||||+|||+|||||||||++|||.+|
T Consensus 224 ERaGNa~lE~lv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Y 298 (488)
T PRK09389 224 ERAGNASLEEVVMALKHL-----YDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGIHVDGLLKDTETY 298 (488)
T ss_pred ccccCccHHHHHHHHHhh-----cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchhhHHHHhCCcccC
Confidence 999999999999999752 478999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHhcCC-c
Q 007056 396 EIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSDEIFQP-E 474 (620)
Q Consensus 396 e~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~~v~~~el~~L~~~~~~~~-~ 474 (620)
|||+|++||++|+ ++||+||||++|+++|+++|++++++++.+++++||++++++++++++||+.|+++.+... +
T Consensus 299 e~~~P~~vG~~~~----~~lg~~SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~~~~~~ 374 (488)
T PRK09389 299 EPITPETVGRERR----IVLGKHAGRAALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVLGIERE 374 (488)
T ss_pred CCCCHHHcCCccc----ccccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhhcCC
Confidence 9999999999874 9999999999999999999999999999999999999999998999999999999888665 5
Q ss_pred ceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhhc--CCceeeeeeeeecCCCCCceEEEE
Q 007056 475 VVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK--EPATLLEYSMNAVTAGIDAIATTR 552 (620)
Q Consensus 475 ~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~--~~~~L~dY~v~av~~G~dA~a~~~ 552 (620)
++|+|.+|+|.++....++|+|++. ++|++++.+++|||||||+++||+++++ .+++|.||++|++++|+||+++++
T Consensus 375 ~~~~l~~~~v~~~~~~~~~a~v~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~~~l~dy~v~~~~~gt~a~~~v~ 453 (488)
T PRK09389 375 RKVKLDELTVVSGNKVTPTASVKLN-VDGEEIVEAGTGVGPVDAAINAVRKALSGVADIELEEYHVDAITGGTDALVEVE 453 (488)
T ss_pred CCEEEEEEEEEECCCCCcEEEEEEE-ECCEEEEEEEEecCHHHHHHHHHHHHhCCCCCeEEEEEEEEcCCCCCceEEEEE
Confidence 6899999999999877899999998 8999999999999999999999999996 479999999999999999999999
Q ss_pred EEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhh
Q 007056 553 VLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKML 601 (620)
Q Consensus 553 V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~ 601 (620)
|+++. +++.|||+|+|+||++||++||++|+||++
T Consensus 454 i~~~~--------------~~~~~~g~g~~~dii~As~~A~~~a~n~~~ 488 (488)
T PRK09389 454 VKLSR--------------GDRVVTVRGADADIIMASVEAMMDGINRLL 488 (488)
T ss_pred EEEEE--------------CCEEEEEEEcCccHHHHHHHHHHHHHHhhC
Confidence 99984 368999999999999999999999999974
No 5
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=5.6e-119 Score=998.65 Aligned_cols=494 Identities=26% Similarity=0.412 Sum_probs=455.9
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeec
Q 007056 76 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 155 (620)
Q Consensus 76 ~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 155 (620)
+|+|+|||||||+|++|++|++++|++|++.|+++||++||+|||.+||+|++++++|++.... .+.|++|+
T Consensus 1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~--------~~~i~~~~ 72 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFK--------NAKIVAFC 72 (526)
T ss_pred CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCC--------CcEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999874211 26899999
Q ss_pred ccchh----hHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC---CCCCC
Q 007056 156 RCNER----DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRS 228 (620)
Q Consensus 156 r~~~~----dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e---d~~r~ 228 (620)
|++++ ++++.++++++++.++||+|+++||+|+++++++|++|+++++.++|+|||++|.. |+|++| |++|+
T Consensus 73 r~~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~-V~~~~e~f~D~~r~ 151 (526)
T TIGR00977 73 STRRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDE-VIYDAEHFFDGYKA 151 (526)
T ss_pred eecCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeeeecccC
Confidence 98877 45788999999999999999999999999999999999999999999999999985 899999 88999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 229 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 229 d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
+++|+.++++++.++||++|+||||+|+++|++++++|+++++++|. .+|++|||||+|||+||+++|+++||++||
T Consensus 152 ~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~---~~i~vH~HND~GlAvANslaAv~AGA~~Vd 228 (526)
T TIGR00977 152 NPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQ---PQLGIHAHNDSGTAVANSLLAVEAGATMVQ 228 (526)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCC---CEEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999873 569999999999999999999999999999
Q ss_pred eccccccCCcCcccHHHHHHHHHhccccccCccc--cCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeecccccc
Q 007056 309 VTINGIGERAGNASLEEVVMAFKCRGEHILGGLY--TGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQD 386 (620)
Q Consensus 309 ~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~--t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~d 386 (620)
+|+|||||||||++||+++++|..+. |+. |++|+++|.++|++|++++|+++++|+||||+|||+||||||||
T Consensus 229 ~TinGiGERaGNa~Le~v~~~L~~~~-----g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~d 303 (526)
T TIGR00977 229 GTINGYGERCGNANLCSLIPNLQLKL-----GYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGVHVS 303 (526)
T ss_pred EecccccCccCCCcHHHHHHHHHhhc-----CCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccccHH
Confidence 99999999999999999999998642 444 79999999999999999999999999999999999999999999
Q ss_pred ccccCCccccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHhcCcCC--HHHH
Q 007056 387 GMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELND--EQLGTIFWHFKAVAEQKKRVT--DADL 462 (620)
Q Consensus 387 gi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~--~~~~~~~~~vk~~a~~~~~v~--~~el 462 (620)
|++|||.+||||+|++||++| +|+|||||||++|+++|+++|+++++ +++.+++++||+++++|++++ +++|
T Consensus 304 gi~k~~~~Ye~~~Pe~vG~~~----~i~lg~~SG~~~v~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~g~~~~~a~~~~ 379 (526)
T TIGR00977 304 AVQRNPFTYEHIAPELVGNER----RIVVSELAGLSNVLSKAKEFGIEIDRQSPACRTILAKIKELEQQGYHFEAAEASF 379 (526)
T ss_pred HHhCCccccccCCHHHcCCcc----EEEEecccCHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHCCcEEeccHHHH
Confidence 999999999999999999886 59999999999999999999999987 689999999999999999988 9999
Q ss_pred HHHHHHHhcCCcceEEEeeEEEEeccCC------eeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhhc------CC
Q 007056 463 IALVSDEIFQPEVVWKLLDMQVTCGTLG------LSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK------EP 530 (620)
Q Consensus 463 ~~L~~~~~~~~~~~~~L~~~~v~~g~~~------~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~------~~ 530 (620)
+.|+++.+....+.|+|.+|+|.+++.. .++|+|++. ++|++++.+++|||||||+++||+++++ .+
T Consensus 380 ~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~a~v~~~-~~g~~~~~~a~G~GpvdA~~~Al~~~~~~~~~~~~~ 458 (526)
T TIGR00977 380 ELLMRQAMGDRKPYFLFQGFQVHCDKLRDAESYRNALATVRVT-VEGQNEHTAAEGNGPVSALDRALRKALERFYPQLKD 458 (526)
T ss_pred HHHHHHHhccCCCcEEEEEEEEEEcCCCCccCCCCcEEEEEEE-ECCEEEEEEEEcCCHHHHHHHHHHHHhhhcccccCc
Confidence 9999666655556799999999988653 689999998 8999999999999999999999999987 46
Q ss_pred ceeeeeeeeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhhcc
Q 007056 531 ATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGF 603 (620)
Q Consensus 531 ~~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~ 603 (620)
++|.||++|++++|+++.|.++|.|+..+ ++++|.|+|+|+||++||++||++|+|+-+..
T Consensus 459 ~~l~dy~v~~~~~~~gt~A~~~v~i~~~~------------~~~~~~~~g~~~dii~As~~A~~~a~n~~~~~ 519 (526)
T TIGR00977 459 FHLTDYKVRILNEGAGTSAKTRVLIESSD------------GKRRWGTVGVSGNIIEASWQALVESIEYKLRK 519 (526)
T ss_pred eEEEEEEEEecCCCCCCcEEEEEEEEEec------------CCeEEEEEEcccCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999996666666677776431 36789999999999999999999999988754
No 6
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=1.1e-118 Score=1001.27 Aligned_cols=497 Identities=28% Similarity=0.375 Sum_probs=461.3
Q ss_pred CceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEee
Q 007056 75 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 154 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 154 (620)
+++.|+|||||||+|++|++|++++|++|++.|+++|||+||+|||.++++|+++++.|++... ..+ .+.+++|
T Consensus 29 ~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s~~e~e~v~~i~~~~~--~~~----~~~i~~l 102 (552)
T PRK03739 29 KAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPSASQTDFDFVRELIEEGL--IPD----DVTIQVL 102 (552)
T ss_pred CCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcChHHHHHHHHHHHhcC--CCC----CCEEEEE
Confidence 4588999999999999999999999999999999999999999999999999999999987511 011 1589999
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC------EEEEcCCCCCCC
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD------DVEFSPEDAGRS 228 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~------~V~f~~ed~~r~ 228 (620)
+|+++.||+++++++++++.++||+|+++||+|+++++++|++|+++++.++|+||+++|.. .|.|++||++|+
T Consensus 103 ~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~ 182 (552)
T PRK03739 103 TQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGT 182 (552)
T ss_pred eccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCC
Confidence 99999999999999988888899999999999999999999999999999999999998721 379999999999
Q ss_pred CHHHHHHHHHHHHHc---CCc---EEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh
Q 007056 229 DRKFLYEILGEVIKV---GAT---TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 302 (620)
Q Consensus 229 d~e~l~~~~~~~~~a---Ga~---~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 302 (620)
|++|++++++++.++ |++ +|+||||+|+++|.+++++|+.+++++|..++++|++|||||+|||+||+++|+++
T Consensus 183 d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~a 262 (552)
T PRK03739 183 ELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMA 262 (552)
T ss_pred CHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHh
Confidence 999999999999874 544 69999999999999999999999999986666899999999999999999999999
Q ss_pred cCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeecc
Q 007056 303 GARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESG 382 (620)
Q Consensus 303 GA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sG 382 (620)
||++||+|+||+|||+||++||+|+++|+. +|+.+++|+++|.++|++|++++|+++++|+||||+|||+||||
T Consensus 263 Ga~~v~gtvnG~GERaGNa~le~vv~~L~~------~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~hesG 336 (552)
T PRK03739 263 GADRVEGCLFGNGERTGNVDLVTLALNLYT------QGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFTAFSG 336 (552)
T ss_pred CCCEEEeeCCcCcccccChhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhccc
Confidence 999999999999999999999999999975 37889999999999999999999999999999999999999999
Q ss_pred ccccccccCCc-----------cccccCCcccCCcccccceEeeeccccHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHH
Q 007056 383 IHQDGMLKHKG-----------TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-ELGYELNDEQLGTIFWHFKAV 450 (620)
Q Consensus 383 iH~dgi~k~~~-----------~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~-~lG~~l~~~~~~~~~~~vk~~ 450 (620)
|||||++|||. +||||+|++||++|+ ..|++||||||++|+++|+ ++||+++++++..++.+||++
T Consensus 337 iH~dgilk~~~~~~~~~~~~~~~Ye~~~Pe~vG~~~~--~~i~lgk~SG~~~i~~~l~~~lG~~l~~~~~~~~~~~vk~~ 414 (552)
T PRK03739 337 SHQDAIKKGFAAQKADAIVWEVPYLPIDPADVGRSYE--AVIRVNSQSGKGGVAYLLEQDYGLDLPRRLQIEFSRVVQAV 414 (552)
T ss_pred hhHHHHhcCchhcccccccccccccccCHHHhCCcce--eEEEecccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999998 899999999999873 2478999999999999998 699999999999999999999
Q ss_pred HHh-cCcCCHHHHHHHHHHHhcC-CcceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhhc
Q 007056 451 AEQ-KKRVTDADLIALVSDEIFQ-PEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK 528 (620)
Q Consensus 451 a~~-~~~v~~~el~~L~~~~~~~-~~~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~ 528 (620)
+++ ++.++++||..|+.+.+.. .++.|+|.+|++ ++....++|+|+|. ++|++++.+++|||||||+++||+++++
T Consensus 415 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~v-~~~~~~~~A~V~l~-v~g~~~~~~a~G~GPVdAl~~AL~~~~~ 492 (552)
T PRK03739 415 TDAEGGELSAEEIWDLFEREYLAPRGRPVLLRVHRL-SEEDGTRTITAEVD-VNGEERTIEGEGNGPIDAFVNALSQALG 492 (552)
T ss_pred HHHhCCCcCHHHHHHHHHHHhhccCCCcEEEEEEEE-ecCCCCcEEEEEEE-ECCEEEEEEEEeCCHHHHHHHHHHHHhC
Confidence 988 5679999999999877753 346899999999 46666799999998 7999999999999999999999999999
Q ss_pred CCceeeeeeeeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhh
Q 007056 529 EPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKML 601 (620)
Q Consensus 529 ~~~~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~ 601 (620)
.+++|.||+++++++|+||+++|+|.++. +++.+||+|+|+||++||++||++|+||++
T Consensus 493 ~~v~L~dY~v~al~~GtdA~~~v~I~~~~--------------~g~~~~G~Gvs~DIi~AS~~Ali~a~n~l~ 551 (552)
T PRK03739 493 VDVRVLDYEEHALGAGSDAQAAAYVELRV--------------GGRTVFGVGIDANIVTASLKAVVSAVNRAL 551 (552)
T ss_pred CCcEEEEEEEEccCCCCCeEEEEEEEEEE--------------CCeEEEEEEeCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999984 368899999999999999999999999975
No 7
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=4.3e-118 Score=998.68 Aligned_cols=505 Identities=26% Similarity=0.331 Sum_probs=466.2
Q ss_pred CceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEee
Q 007056 75 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 154 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 154 (620)
+.+.|+|||||||+|++|++|++++|++|++.|+++|||+||+|||.+++.|+++|+++.+... +.+ .+.+++|
T Consensus 25 ~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s~~D~e~v~~i~~~~l--~~~----~~~i~al 98 (564)
T TIGR00970 25 RAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSASQTDFDFVREIIEQGA--IPD----DVTIQVL 98 (564)
T ss_pred cCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--CCC----CcEEEEE
Confidence 4589999999999999999999999999999999999999999999999999999999987521 011 1589999
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---------EEEEcCCCC
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---------DVEFSPEDA 225 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~---------~V~f~~ed~ 225 (620)
+|+++.||+++++++++++.++||+|+++||+|+++++|+|++|+++++.++|++++++|.. .|.|++||+
T Consensus 99 ~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~ 178 (564)
T TIGR00970 99 TQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESF 178 (564)
T ss_pred cCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccC
Confidence 99999999999999988888899999999999999999999999999999999999998752 488999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC------cEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH
Q 007056 226 GRSDRKFLYEILGEVIKVGA------TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 299 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa------~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 299 (620)
+|++++|++++++++.++|+ ++|+||||+|+++|.+++++|+++++++|...+++|++|||||+|||+||+++|
T Consensus 179 ~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaA 258 (564)
T TIGR00970 179 SDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELG 258 (564)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHH
Confidence 99999999999999999987 499999999999999999999999999987667899999999999999999999
Q ss_pred HHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceee
Q 007056 300 ACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAH 379 (620)
Q Consensus 300 v~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h 379 (620)
+++||++||||+||+|||+||++||+|+++|+. +|+.|++|++.|.++++++++++|++++||+||||+|||+|
T Consensus 259 v~aGa~~v~gt~~G~GERaGNa~le~lv~~L~~------~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~h 332 (564)
T TIGR00970 259 FLAGADRIEGCLFGNGERTGNVDLVTLALNLYT------QGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYTA 332 (564)
T ss_pred HHhCCCEEEeecCcCCccccCccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhhh
Confidence 999999999999999999999999999999986 37889999999999999999999999999999999999999
Q ss_pred eccccccccccCCc---------------cccccCCcccCCcccccceEeeeccccHHHHHHHHH-HcCCCCCHHHHHHH
Q 007056 380 ESGIHQDGMLKHKG---------------TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-ELGYELNDEQLGTI 443 (620)
Q Consensus 380 ~sGiH~dgi~k~~~---------------~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~-~lG~~l~~~~~~~~ 443 (620)
+|||||||++|++. +||||+|++||++|+ ..|+||+||||++|+++|+ ++||+++++++.++
T Consensus 333 ~SGiH~dai~K~~~~~~~~~~~~~~~~~~~Ye~~~Pe~vG~~~~--~~i~lg~~SGk~~i~~~l~~~~G~~l~~~~~~~~ 410 (564)
T TIGR00970 333 FSGSHQDAINKGLDAMKLDAAAADMLWQVPYLPLDPRDVGRTYE--AVIRVNSQSGKGGVAYIMKTDHGLDLPRRLQIEF 410 (564)
T ss_pred ccchhHHHHhcCchhhcccccccccccccccccCCHHHhCCccc--cEEEccccccHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999976 999999999998863 3599999999999999996 79999999999999
Q ss_pred HHHHHHHHH-hcCcCCHHHHHHHHHHHhcC---CcceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHH
Q 007056 444 FWHFKAVAE-QKKRVTDADLIALVSDEIFQ---PEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSA 519 (620)
Q Consensus 444 ~~~vk~~a~-~~~~v~~~el~~L~~~~~~~---~~~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~ 519 (620)
+.+||++++ ++++++++||..|+.+.|.. .+..|+|.+|++.+++...+++++++. ++|+++..+++|||||||+
T Consensus 411 ~~~vk~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~a~~~l~-v~g~~~~~~a~GnGPVdAl 489 (564)
T TIGR00970 411 SSVVQDIADGEGGELSPKEISDLFAEEYLAPVEPLERISQHVYAADDDGTGTTSITATVK-INGVETDIEGSGNGPLSAL 489 (564)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCcEEEEEEEEEeCCCCceEEEEEEE-ECCEEEEEEEEecCHHHHH
Confidence 999999998 55679999999999888865 245799999999887666688888887 8999999999999999999
Q ss_pred HHHHHHhhcCCceeeeeeeeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHh
Q 007056 520 YKAVDLIVKEPATLLEYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNK 599 (620)
Q Consensus 520 ~~AL~~~~~~~~~L~dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~ 599 (620)
++||+++++.+++|.||++|++++|+||.|+|+|.|+.++.. ..+++.+||+|+|+||++||++||++|+||
T Consensus 490 ~~AL~~~~~~~~~L~dY~v~al~~g~~a~a~v~V~i~~~~~~--------~~~g~~~~GvGvs~DIi~AS~~Ali~AlNr 561 (564)
T TIGR00970 490 VDALADVGNFDFAVLDYYEHAMGSGDDAQAASYVEASVTIAS--------PAQPGTVWGVGIAPDVTTASLRAVVSAVNR 561 (564)
T ss_pred HHHHHHHHCCCeEEEEEEEEecCCCCCceEEEEEEEEECCcc--------CCCCCeEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999853100 012688999999999999999999999999
Q ss_pred hhc
Q 007056 600 MLG 602 (620)
Q Consensus 600 l~~ 602 (620)
+.+
T Consensus 562 l~~ 564 (564)
T TIGR00970 562 AAR 564 (564)
T ss_pred hcC
Confidence 753
No 8
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-119 Score=943.69 Aligned_cols=508 Identities=55% Similarity=0.823 Sum_probs=471.8
Q ss_pred CCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCc
Q 007056 68 PNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY 147 (620)
Q Consensus 68 ~~~~~~~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l 147 (620)
|+..++++.++++|||||||+|++|..|++++|++|+++|+.+|||+||+|||.+|++||++++.+++.. ++
T Consensus 49 ~~~l~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~--------g~ 120 (560)
T KOG2367|consen 49 PNDLSDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTL--------GY 120 (560)
T ss_pred CccccCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhC--------CC
Confidence 6667888999999999999999999999999999999999999999999999999999999999999852 56
Q ss_pred cceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 007056 148 VPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR 227 (620)
Q Consensus 148 ~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r 227 (620)
.+.||++.||+++||+++||++++++.++||+|+++||+|++++++||++|+++++.++++++|++|+..++|+|||++|
T Consensus 121 ~~~I~~l~rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~r 200 (560)
T KOG2367|consen 121 VPVICTLIRCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGR 200 (560)
T ss_pred CceEEEeeccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECcccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999997679999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
++++|++++++++.++|+.+++||||||+++|.++++||++++.++|+++++.|+.|||||+|||+||++.+++|||++|
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~V 280 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQV 280 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccc
Q 007056 308 EVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDG 387 (620)
Q Consensus 308 d~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dg 387 (620)
|+||+|+|||+||++|++|+|+|..+|.++ +...+++.+|.++.++|+++.++++|||+||+|.++|+|+|||||||
T Consensus 281 E~~i~GiGERtGn~~L~~v~m~my~~g~~~---vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Fth~SGiHqda 357 (560)
T KOG2367|consen 281 EVTINGIGERTGNAPLEEVVMAMYCRGPDY---VSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFTHESGIHQDA 357 (560)
T ss_pred EEEeeccccccCCCCHHHHHHHheecCchh---cCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEeecccccHHH
Confidence 999999999999999999999999987654 45667777888888899999999999999999999999999999999
Q ss_pred cccCCccccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcC-CHHHHHHHH
Q 007056 388 MLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRV-TDADLIALV 466 (620)
Q Consensus 388 i~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~~v-~~~el~~L~ 466 (620)
|+|+|.||||+||++||++| +..|++|++|||++++++|++||++|+++++.+++.+||++++++++. .-+|+..++
T Consensus 358 Ilk~r~tYeiLdPeDiG~~~--~a~i~~n~lSG~~avk~rl~~Lgl~L~d~~~~e~~s~~k~lad~k~R~l~~d~i~~v~ 435 (560)
T KOG2367|consen 358 ILKNRSTYEILDPEDIGMER--EAGIVLNKLSGRHAVKDRLKQLGLDLPDEQQKEFFSRIKKLADQKKRELDADEIALVF 435 (560)
T ss_pred HhcCCCCcccCChHHcCcce--eeeEEeccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 99999999999999999987 568999999999999999999999999999999999999999998874 555555666
Q ss_pred HHHhcCCcceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhhcCCceeeeeeeeecCCCCC
Q 007056 467 SDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTAGID 546 (620)
Q Consensus 467 ~~~~~~~~~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~~~~~L~dY~v~av~~G~d 546 (620)
.+.|......+.|.+|. .+++++...+.+...+++|+.+..++.||||++|+++||+.++++++.+..|++|++++|+|
T Consensus 436 ~e~~~~e~~~~~L~~~~-~~g~~~~~~~~~~~vd~~~~~~v~~~vgngpis~lvdal~~~~n~~~~~~~yseha~gsg~~ 514 (560)
T KOG2367|consen 436 KETYAYESSAESLNNYI-VKGTNGLSRAIVGQVDIDGKIVVIEGVGNGPISSLVDALSNLLNVPFTVLNYSEHALGSGSD 514 (560)
T ss_pred HHhhhccccHHHHhhhh-hccCCccccceeeeeecCCceeeeeccCCCcHHHHHHHHHHHhcCchhHhhhhhhhhccCcc
Confidence 66554433455566554 46666667777777778999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhhcc
Q 007056 547 AIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGF 603 (620)
Q Consensus 547 A~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~ 603 (620)
++|.+||.|..- ..++||||+++|+..|+++|+++.+|++...
T Consensus 515 ~~aas~v~i~~~--------------~~~~wgvg~~~d~~~a~~~av~s~v~~~~~a 557 (560)
T KOG2367|consen 515 TQAASYVLISYY--------------NNTNWGVGVSEDVTDAGMKAVFSTVNNIIHA 557 (560)
T ss_pred cceeeEEEEEee--------------cccccceeeecccCCchHHHHHHHHHHHHhc
Confidence 999999999973 2456999999999999999999999998764
No 9
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=7e-115 Score=967.16 Aligned_cols=498 Identities=29% Similarity=0.460 Sum_probs=454.8
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEe
Q 007056 74 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 74 ~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
|++|+|+|||||||+|+++++|++++|++|++.|+++||++||+|||.++++|++++++|.+.... .+.+++
T Consensus 3 ~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~--------~~~i~~ 74 (524)
T PRK12344 3 MERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLK--------HAKLAA 74 (524)
T ss_pred CCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCC--------CcEEEE
Confidence 456999999999999999999999999999999999999999999999999999999999874100 157999
Q ss_pred ecccchhhH----HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC---CCC
Q 007056 154 LSRCNERDI----KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAG 226 (620)
Q Consensus 154 ~~r~~~~dI----~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e---d~~ 226 (620)
|+|+.+.|+ +..+++++.+|.++||+|+++||+|+++++|+|++|+++++.+++++|+++|.+ |+|++| |++
T Consensus 75 ~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~-v~~~~e~~~Da~ 153 (524)
T PRK12344 75 FGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGRE-VIFDAEHFFDGY 153 (524)
T ss_pred EeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEccccccccc
Confidence 999988777 678888889999999999999999999999999999999999999999999985 999999 889
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcE
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 306 (620)
|++++|+.++++++.++||++|+||||+|+++|++++++|+.+++++ +++|++|||||+|||+||+++|+++||++
T Consensus 154 r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~----~v~i~~H~HND~GlA~ANslaAi~aGa~~ 229 (524)
T PRK12344 154 KANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP----GVPLGIHAHNDSGCAVANSLAAVEAGARQ 229 (524)
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc----CCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999988 37899999999999999999999999999
Q ss_pred EeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeecccccc
Q 007056 307 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQD 386 (620)
Q Consensus 307 Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~d 386 (620)
||+|++|||||+||++||+|+++|..+.. ..+.|++|++.|.+++++|++++|+++++|+||||+|+|+|+||||||
T Consensus 230 Vd~Tl~GlGERaGNa~lE~lv~~L~~~~g---~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SGiH~d 306 (524)
T PRK12344 230 VQGTINGYGERCGNANLCSIIPNLQLKMG---YECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGGIHVS 306 (524)
T ss_pred EEEecccccccccCcCHHHHHHHHHhccC---CCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhccccHH
Confidence 99999999999999999999999986421 125589999999999999999999999999999999999999999999
Q ss_pred ccccCCccccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHhcCcCCHH--HH
Q 007056 387 GMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYEL--NDEQLGTIFWHFKAVAEQKKRVTDA--DL 462 (620)
Q Consensus 387 gi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l--~~~~~~~~~~~vk~~a~~~~~v~~~--el 462 (620)
|++|||.+||||+|++||++| +|++|+|||+++|+++|+++|+++ +++++.+++++||+++++|++++++ ++
T Consensus 307 gi~k~~~~Ye~~~P~~vG~~~----~i~lg~~SG~~~i~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~ 382 (524)
T PRK12344 307 AVLKDPRTYEHIDPELVGNRR----RVLVSELAGRSNILAKAKELGIDLDKDDPRLKRLLERIKELEAEGYQFEAAEASF 382 (524)
T ss_pred HHhCCcccccCCCHHHhCCcc----cccccchhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHcCCcEEechHHHH
Confidence 999999999999999999876 499999999999999999999999 6889999999999999999988744 88
Q ss_pred HHHHHHHhcCCcceEEEeeEEEEeccCCe--eEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhhc------CCceee
Q 007056 463 IALVSDEIFQPEVVWKLLDMQVTCGTLGL--STATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVK------EPATLL 534 (620)
Q Consensus 463 ~~L~~~~~~~~~~~~~L~~~~v~~g~~~~--~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~------~~~~L~ 534 (620)
..|+.+.+...+.+|+|.+|+|.+++... ++|+|++. ++|+++..+++|||||||+++||+++++ .+++|.
T Consensus 383 ~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~a~v~~~-~~g~~~~~~~~G~GpvdA~~~Al~~~~~~~~~~~~~~~l~ 461 (524)
T PRK12344 383 ELLLRRELGEYPPFFELESFRVIVEKRGDGVSEATVKVR-VGGEREHTAAEGNGPVNALDNALRKALEKFYPELAEVELV 461 (524)
T ss_pred HHHHHHHhccCCCcEEEEEEEEEECCCCCcCcEEEEEEE-ECCEEEEEEEEecCHHHHHHHHHHHHhccccccccccEEE
Confidence 88885555455568999999999987654 99999998 8999999999999999999999999998 569999
Q ss_pred eeeeeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhhccc
Q 007056 535 EYSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKMLGFK 604 (620)
Q Consensus 535 dY~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~~~~ 604 (620)
||+++++++|+++.|.++|.|+.++ +++.|.|+|+|+||++||++||++|+|+.+...
T Consensus 462 ~y~~~~~~~~~~~~a~~~v~i~~~~------------~~~~~~~~g~~~di~~As~~A~~~a~n~~~~~~ 519 (524)
T PRK12344 462 DYKVRILDGGKGTAAVVRVLIESTD------------GKRRWTTVGVSTNIIEASWQALVDSIEYKLLKD 519 (524)
T ss_pred EEEEEcCCCCCCCceEEEEEEEEec------------CCeEEEEEEccccHHHHHHHHHHHHHHHHHhhc
Confidence 9999999996555555566665421 367899999999999999999999999988653
No 10
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=2.4e-97 Score=816.19 Aligned_cols=407 Identities=68% Similarity=1.124 Sum_probs=380.9
Q ss_pred CCCCcCCCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccc
Q 007056 62 SRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAV 141 (620)
Q Consensus 62 ~~~~~~~~~~~~~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~ 141 (620)
+-|.|+|+..+++++|+|+|||||||+|++|+.||.++|++|++.|+++||++||+|||+++++|+++++.|++..++..
T Consensus 70 ~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~ 149 (503)
T PLN03228 70 RWPEYIPNKLPDKNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEV 149 (503)
T ss_pred cccccCCcccCCCCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999987643211
Q ss_pred cccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc
Q 007056 142 DAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS 221 (620)
Q Consensus 142 ~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~ 221 (620)
....++.+++++|+|++++||++++++++.++.++|++|+++||+|+++++|+|++|+++++.++|++||++|+..|.|+
T Consensus 150 ~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~ 229 (503)
T PLN03228 150 DEETGYVPVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFG 229 (503)
T ss_pred ccccccceEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEec
Confidence 11124678999999999999999999998889999999999999999999999999999999999999999998558999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHH
Q 007056 222 PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 301 (620)
Q Consensus 222 ~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 301 (620)
+||++|+|++|+.++++++.++||++|+||||+|+++|++++++|+.+++++|+.++++|++|||||+|||+||+++|++
T Consensus 230 ~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~ 309 (503)
T PLN03228 230 CEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGIC 309 (503)
T ss_pred cccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988655689999999999999999999999
Q ss_pred hcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeec
Q 007056 302 AGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHES 381 (620)
Q Consensus 302 aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~s 381 (620)
+||++||+|++|||||+||++||+|+++|+.++..+.+|+++++|++.|.+++++|++++|+++++++||||+|+|+|||
T Consensus 310 aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~naF~heS 389 (503)
T PLN03228 310 AGARQVEVTINGIGERSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANCFVHES 389 (503)
T ss_pred hCCCEEEEeccccccccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHhcc
Confidence 99999999999999999999999999999886543345889999999999999999999999999999999999999999
Q ss_pred cccccccccCCccccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHH
Q 007056 382 GIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDAD 461 (620)
Q Consensus 382 GiH~dgi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~~v~~~e 461 (620)
||||||++|||.+||||+||+||+.|..+.++++|||||+++|+++|+++|++++++++.+++++||+++++++.++++|
T Consensus 390 GIH~dgilK~p~tYe~~~Pe~vG~~~~~~~~i~lgk~SG~~av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~e 469 (503)
T PLN03228 390 GIHQDGILKNRSTYEILSPEDIGIVKSQNSGIVLGKLSGRHAVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDAD 469 (503)
T ss_pred chhHHHHhCCcccccCCCHHHhCCcccccceeecchHhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999854334579999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHH
Q 007056 462 LIALVSD 468 (620)
Q Consensus 462 l~~L~~~ 468 (620)
|..|+..
T Consensus 470 l~~i~~~ 476 (503)
T PLN03228 470 LKALVVN 476 (503)
T ss_pred HHHHHhc
Confidence 9999765
No 11
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-95 Score=781.45 Aligned_cols=402 Identities=51% Similarity=0.767 Sum_probs=368.8
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeec
Q 007056 76 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 155 (620)
Q Consensus 76 ~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 155 (620)
+|+|+|||||||+|++|++||+++|++|+++|+++||++||+|||.+++.|+++++.+....+. . ....+++|.
T Consensus 2 ~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~----~~~~~~~~~ 75 (409)
T COG0119 2 KVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--F----ICALIAALA 75 (409)
T ss_pred CcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--c----cchhhhhhH
Confidence 5899999999999999999999999999999999999999999999999999999999852211 0 023455555
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH
Q 007056 156 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 156 r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~ 235 (620)
|.. ++.++++..++.++||+|+++||+|+++++++|++|+++++.++++||+++|++ +.|++||++|++++|+++
T Consensus 76 ~~~----~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~-~~~~~Ed~~rt~~~~l~~ 150 (409)
T COG0119 76 RAI----KRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLE-VRFSAEDATRTDPEFLAE 150 (409)
T ss_pred HhH----HhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeccccCCHHHHHH
Confidence 554 444555566799999999999999999999999999999999999999999975 999999999999999999
Q ss_pred HHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccccc
Q 007056 236 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 315 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlG 315 (620)
+++++.++||++|+||||+|+++|++++++|+++++++|+ +++|++|||||+|||+||+++|+++||++||+|+||||
T Consensus 151 ~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~--~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiG 228 (409)
T COG0119 151 VVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPN--KVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIG 228 (409)
T ss_pred HHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCC--CCeEEEEecCCcchHHHHHHHHHHcCCcEEEEecccce
Confidence 9999999999999999999999999999999999999985 58999999999999999999999999999999999999
Q ss_pred CCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCccc
Q 007056 316 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 395 (620)
Q Consensus 316 ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~~Y 395 (620)
||+||++||+++++|..+.. +|+.+++|+.+|+++|+++++++|+++|||+||||+|+|+|+|||||||++|||.+|
T Consensus 229 ERaGna~l~~v~~~l~~~~~---~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGIH~dgvlkn~~tY 305 (409)
T COG0119 229 ERAGNAALEEVVLALALRKD---YGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGIHQDGVLKNPETY 305 (409)
T ss_pred eccccccHHHHHHHHHHHhh---cCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcchhHHHHhhCHhhc
Confidence 99999999999999888753 468999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCcccccceEeee-ccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHhcC
Q 007056 396 EIISPEDIGLERSSEAGIVLG-KLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKK--RVTDADLIALVSDEIFQ 472 (620)
Q Consensus 396 e~i~Pe~vG~~r~~~~~i~lg-~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~--~v~~~el~~L~~~~~~~ 472 (620)
|||+||+||++|. ++++ ++||+++++.+|+++|+++++++++.++.+||+++++++ +++|+||+.|+.+.+..
T Consensus 306 E~i~Pe~VG~~r~----~vi~~~~sg~~~~~~~l~~~g~~~~~~~~~~~~~~vk~l~~~~~~~e~~d~~l~~l~~~~~~~ 381 (409)
T COG0119 306 EPIDPEDVGRRRR----IVIGGKHSGRKAVKAKLEELGIELDEEELDKLFSRVKELADKGKKKEVTDADLEALVEEELGS 381 (409)
T ss_pred CCCCHHHcCCeee----eEeeccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHhcc
Confidence 9999999999885 6666 999999999999999999999999999999999998854 49999999999999876
Q ss_pred C--cceEEEeeEEEEeccCCeeEEEEEEE
Q 007056 473 P--EVVWKLLDMQVTCGTLGLSTATVKLM 499 (620)
Q Consensus 473 ~--~~~~~L~~~~v~~g~~~~~~AtV~l~ 499 (620)
. ...+++..+++.+++ .++|+|++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~--~~~a~v~~~ 408 (409)
T COG0119 382 REPFEKISLDVLTVQSGN--VPTASVKLE 408 (409)
T ss_pred cCcccceeEEEEEEeeCC--CceeEEEEe
Confidence 4 357888888888887 789999975
No 12
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=1.4e-91 Score=754.81 Aligned_cols=371 Identities=49% Similarity=0.739 Sum_probs=353.4
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEe
Q 007056 74 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 74 ~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
|++|+|+|||||||+|++++.||+++|++|++.|+++||++||+|||..+++|++.++.+.+. ++.+.+++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~---------~~~~~i~~ 72 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKL---------GLNASILA 72 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhc---------CCCeEEEE
Confidence 567999999999999999999999999999999999999999999999999999999999874 22368999
Q ss_pred ecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHH
Q 007056 154 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 233 (620)
Q Consensus 154 ~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l 233 (620)
|+|++++||++++++ |+++|++|+++||.|+++++|+|++|+++++.+++++|++.|+. |+|++||++|++++|+
T Consensus 73 ~~r~~~~di~~a~~~----g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~r~~~~~l 147 (378)
T PRK11858 73 LNRAVKSDIDASIDC----GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLY-VSFSAEDASRTDLDFL 147 (378)
T ss_pred EcccCHHHHHHHHhC----CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeccCCCCCHHHH
Confidence 999999999998875 89999999999999999999999999999999999999999985 9999999999999999
Q ss_pred HHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccc
Q 007056 234 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 313 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~G 313 (620)
.++++++.++|+++|+||||+|+++|++++++|+.+++++ +++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 148 ~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~----~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~G 223 (378)
T PRK11858 148 IEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV----DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNG 223 (378)
T ss_pred HHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc----CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecc
Confidence 9999999999999999999999999999999999999988 278999999999999999999999999999999999
Q ss_pred ccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCc
Q 007056 314 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKG 393 (620)
Q Consensus 314 lGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~ 393 (620)
||||+||++||+|+++|+.+ +|+++++|+++|.++++++++++|+++++++||||+|+|+|||||||||++|||.
T Consensus 224 lGeraGNa~lE~vv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGiH~~gi~k~~~ 298 (378)
T PRK11858 224 LGERAGNAALEEVVMALKYL-----YGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPL 298 (378)
T ss_pred ccccccCccHHHHHHHHHHH-----hCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccccHHHHhCCcc
Confidence 99999999999999999853 4788999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHhc
Q 007056 394 TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKK-RVTDADLIALVSDEIF 471 (620)
Q Consensus 394 ~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~-~v~~~el~~L~~~~~~ 471 (620)
+||||+||.||++|+ ++||+|||+++|+++|+++|++++++++..++++||+++++++ .++++||..|+.+...
T Consensus 299 ~Ye~~~P~~vG~~~~----~~~g~~SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~~~ 373 (378)
T PRK11858 299 TYEPFLPEEVGLERR----IVLGKHSGRHALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDVRR 373 (378)
T ss_pred cccccCHHHcCCccc----ccccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999874 9999999999999999999999999999999999999998875 6999999999987553
No 13
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=9.2e-91 Score=745.89 Aligned_cols=362 Identities=42% Similarity=0.602 Sum_probs=346.0
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecc
Q 007056 77 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 156 (620)
Q Consensus 77 V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 156 (620)
|+|+|||||||+|++++.|+.++|++|++.|+++||+.||+|||..++.|+++++.+.+... .+.+++|+|
T Consensus 2 v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~---------~~~i~~~~r 72 (365)
T TIGR02660 2 VIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGL---------PARLMAWCR 72 (365)
T ss_pred cEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCC---------CcEEEEEcC
Confidence 78999999999999999999999999999999999999999999999999999999987532 257899999
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHH
Q 007056 157 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 236 (620)
Q Consensus 157 ~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~ 236 (620)
++.+||+.++++ |++.|++|+++||.|+++++|+|++|+++++.++|++|+++|.. |+|++||++|++++|+.++
T Consensus 73 ~~~~di~~a~~~----g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~~r~~~~~l~~~ 147 (365)
T TIGR02660 73 ARDADIEAAARC----GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLF-VSVGGEDASRADPDFLVEL 147 (365)
T ss_pred CCHHHHHHHHcC----CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE-EEEeecCCCCCCHHHHHHH
Confidence 999999988765 89999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccC
Q 007056 237 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 316 (620)
Q Consensus 237 ~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGE 316 (620)
++++.++|+++|+||||+|+++|++++++|+.++++++ ++|++|||||+|||+||+++|+++||++||+|++||||
T Consensus 148 ~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe 223 (365)
T TIGR02660 148 AEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD----LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE 223 (365)
T ss_pred HHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc
Confidence 99999999999999999999999999999999999873 68999999999999999999999999999999999999
Q ss_pred CcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCcccc
Q 007056 317 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYE 396 (620)
Q Consensus 317 RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~~Ye 396 (620)
|+||++||+|+++|+.+ +|+++++|++.|.++++++++++|+++++++||||+|+|+|+|||||||++|||.+||
T Consensus 224 raGN~~lE~lv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH~~~i~k~~~~Ye 298 (365)
T TIGR02660 224 RAGNAALEEVAMALKRL-----LGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYE 298 (365)
T ss_pred ccccCCHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccCC
Confidence 99999999999999543 4788999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcC-cCCHHHHHHH
Q 007056 397 IISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKK-RVTDADLIAL 465 (620)
Q Consensus 397 ~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~-~v~~~el~~L 465 (620)
||+|++||++| +++||+|||+++|+++|+++|++++++++.+++++||+++++++ .++++||..+
T Consensus 299 ~~~P~~vG~~~----~~~i~~~SG~~~i~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~ 364 (365)
T TIGR02660 299 PFDPELVGRSR----RIVIGKHSGRAALINALAQLGIPLSEEEAAALLPAVRAFATRLKRPLSDAELIAL 364 (365)
T ss_pred CcCHHHcCCee----EEEeEchhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHh
Confidence 99999999887 49999999999999999999999999999999999999998876 6999999876
No 14
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=1.9e-89 Score=734.69 Aligned_cols=362 Identities=52% Similarity=0.802 Sum_probs=347.0
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecc
Q 007056 77 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 156 (620)
Q Consensus 77 V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 156 (620)
|+|+|||||||+|++++.||+++|++|++.|+++||+.||+|||.++++|+++++.+.+.. +...+++|+|
T Consensus 1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~---------~~~~v~~~~r 71 (363)
T TIGR02090 1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEG---------LNAEICSLAR 71 (363)
T ss_pred CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcC---------CCcEEEEEcc
Confidence 5799999999999999999999999999999999999999999999999999999998752 2257999999
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHH
Q 007056 157 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 236 (620)
Q Consensus 157 ~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~ 236 (620)
++++||++++++ |++.|++|+++||+|++.+++++++|+++++.+++++|+++|+. |+|++||++|++++|+.++
T Consensus 72 ~~~~di~~a~~~----g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda~r~~~~~l~~~ 146 (363)
T TIGR02090 72 ALKKDIDKAIDC----GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLI-VEFSAEDATRTDIDFLIKV 146 (363)
T ss_pred cCHHHHHHHHHc----CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeecCCCCHHHHHHH
Confidence 999999998875 89999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccC
Q 007056 237 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 316 (620)
Q Consensus 237 ~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGE 316 (620)
++++.++|+++|+||||+|.++|++++++|+.++++++ ++|++|||||+|||+||+++|+++||++||+|++||||
T Consensus 147 ~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~----~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe 222 (363)
T TIGR02090 147 FKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK----LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE 222 (363)
T ss_pred HHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC----ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc
Confidence 99999999999999999999999999999999999875 68999999999999999999999999999999999999
Q ss_pred CcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCcccc
Q 007056 317 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYE 396 (620)
Q Consensus 317 RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~~Ye 396 (620)
|+||++||+|+++|+.. +|+++++|+++|.++++++++++|+++++++||||+|+|+||||||+||++|||.+||
T Consensus 223 raGN~~lE~vv~~L~~~-----~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGiH~~~i~k~~~~Ye 297 (363)
T TIGR02090 223 RAGNAALEEVVMALKYL-----YGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGIHVDGVIENPLTYE 297 (363)
T ss_pred ccccccHHHHHHHHHHh-----hCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcchhHHHHcCCcccCC
Confidence 99999999999999863 4788999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHH
Q 007056 397 IISPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIAL 465 (620)
Q Consensus 397 ~i~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~~v~~~el~~L 465 (620)
||+|+.||++| +++||+|||+++|+++|+++|++++++++..++++||+++++++.++++||..+
T Consensus 298 ~~~P~~vG~~~----~~~~g~~SG~~~i~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~~ 362 (363)
T TIGR02090 298 PISPEVVGNKR----RIILGKHSGRHAVEAKLKELGIKVTDEQLKEILKRIKEIGDKGKRVTDADVKEI 362 (363)
T ss_pred CCCHHHcCCcc----eeechhhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 99999999987 499999999999999999999999999999999999999999888999999876
No 15
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-72 Score=587.10 Aligned_cols=297 Identities=25% Similarity=0.347 Sum_probs=273.2
Q ss_pred CCCCcCCCCCCCCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccc
Q 007056 62 SRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAV 141 (620)
Q Consensus 62 ~~~~~~~~~~~~~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~ 141 (620)
+=|.++|.+.+. |+|||||||+|++|+.||.++|++|++.|+++|||+||+|||++|++|++++++|++... +
T Consensus 23 ~w~~~~~~~~p~-----~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~--~ 95 (333)
T PRK14847 23 AWPARRPAAAPI-----WMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERR--I 95 (333)
T ss_pred CCcccccCCCCc-----eecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCC--C
Confidence 556666665443 999999999999999999999999999999999999999999999999999999998521 0
Q ss_pred cccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC------
Q 007056 142 DAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC------ 215 (620)
Q Consensus 142 ~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~------ 215 (620)
+. .+.+++|+|++++||+++++++++++.++||+|+|+||+|++.+|+++++|+++++.++|+|||++|.
T Consensus 96 ~~----~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~ 171 (333)
T PRK14847 96 PD----DVTIEALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQ 171 (333)
T ss_pred CC----CcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCc
Confidence 01 25899999999999999999999888999999999999999999999999999999999999999954
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHc-C-----CcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCc
Q 007056 216 DDVEFSPEDAGRSDRKFLYEILGEVIKV-G-----ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 289 (620)
Q Consensus 216 ~~V~f~~ed~~r~d~e~l~~~~~~~~~a-G-----a~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~ 289 (620)
..|+|++||++|+|++|+.++++++.+. | +++|+||||+|+++|++++++|+.++++++..++++|++|||||+
T Consensus 172 ~~V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~ 251 (333)
T PRK14847 172 WIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDR 251 (333)
T ss_pred eEEEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Confidence 1499999999999999999999988666 5 778999999999999999999999999987655799999999999
Q ss_pred chHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCC
Q 007056 290 GLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHK 369 (620)
Q Consensus 290 GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~ 369 (620)
|||+||+++|+++||++||+|++|+|||+||++||+|+++|.. +|+.+++|++.|.+++++|++++|+++++||
T Consensus 252 GlA~ANslaA~~aGa~~i~~tv~G~GERaGNa~lE~v~~~L~~------~g~~~~id~~~l~~~~~~v~~~sg~~v~~~k 325 (333)
T PRK14847 252 GTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLER------QGIASGLDFRDMAALRACVSECNQLPIDVFH 325 (333)
T ss_pred chHHHHHHHHHHhCCCEEEeeCCcCCccccchhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999999999999999999999986 3788999999999999999999999999999
Q ss_pred cccCcc
Q 007056 370 AIVGAN 375 (620)
Q Consensus 370 pivG~n 375 (620)
||||-.
T Consensus 326 Pivg~~ 331 (333)
T PRK14847 326 PYAWLD 331 (333)
T ss_pred CeecCC
Confidence 999963
No 16
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=4.8e-62 Score=505.25 Aligned_cols=274 Identities=31% Similarity=0.472 Sum_probs=252.7
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHH-hHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCc--cceEEeecc
Q 007056 80 FDTTLRDGEQSPGATLTSKEKLDIARQL-AKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY--VPVICGLSR 156 (620)
Q Consensus 80 ~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L-~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l--~~~i~~~~r 156 (620)
+|||||||+|+++..||+++|++|++.| +++||+.||+|||..+|+|++.++++++..... ++ ...+++|.+
T Consensus 1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~-----~~~~~~~~~a~~~ 75 (280)
T cd07945 1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEE-----GLLDRIEVLGFVD 75 (280)
T ss_pred CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhh-----ccccCcEEEEecC
Confidence 5999999999999999999999999997 888999999999999999999999998753111 11 246778876
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC---CCCHHHH
Q 007056 157 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG---RSDRKFL 233 (620)
Q Consensus 157 ~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~---r~d~e~l 233 (620)
. .+++++++++ |++.|++++|+||.|+++++|+|++|+++++.+++++|+++|++ |+|+++|++ |++++|+
T Consensus 76 ~-~~~~~~A~~~----g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~-v~~~~~d~~~~~r~~~~~~ 149 (280)
T cd07945 76 G-DKSVDWIKSA----GAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIE-VNIYLEDWSNGMRDSPDYV 149 (280)
T ss_pred c-HHHHHHHHHC----CCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCE-EEEEEEeCCCCCcCCHHHH
Confidence 4 6678877665 89999999999999999999999999999999999999999985 999999866 8999999
Q ss_pred HHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccc
Q 007056 234 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 313 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~G 313 (620)
.++++++.++|+++|+||||+|+++|++++++++.+++++|+ ++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 150 ~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~---~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~G 226 (280)
T cd07945 150 FQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPN---LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNG 226 (280)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCC---CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 999999999999999999999999999999999999998874 78999999999999999999999999999999999
Q ss_pred ccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCccc
Q 007056 314 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIV 372 (620)
Q Consensus 314 lGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~piv 372 (620)
||||+||++||+++++|+.+ +|+.+++|+++|.++++++++++|+++++|||||
T Consensus 227 lGe~aGN~~~E~~v~~L~~~-----~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 227 LGERAGNAPLASVIAVLKDK-----LKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred ccccccCccHHHHHHHHHHh-----cCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 99999999999999999753 4788999999999999999999999999999996
No 17
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=1e-61 Score=502.17 Aligned_cols=269 Identities=32% Similarity=0.444 Sum_probs=246.9
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 158 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 158 (620)
++|||||||+|++|++||+++|++|++.|+++||++||+|||..+++|++.+++|++.... .. ...+++|+|+.
T Consensus 4 ~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~--~~----~~~~~al~r~~ 77 (284)
T cd07942 4 WCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEEDLI--PD----DVTIQVLTQAR 77 (284)
T ss_pred ccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCC--CC----CCEEEEEcCCC
Confidence 5799999999999999999999999999999999999999999999999999999764210 00 25789999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC------EEEEcCCCCCCCCHHH
Q 007056 159 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD------DVEFSPEDAGRSDRKF 232 (620)
Q Consensus 159 ~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~------~V~f~~ed~~r~d~e~ 232 (620)
+.||++++++..+++.++|++|+|+||.|+++|+|+|++|+++++.++|+||+++|.+ .+.|++||++|++++|
T Consensus 78 ~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~ 157 (284)
T cd07942 78 EDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDF 157 (284)
T ss_pred hhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHH
Confidence 9999999998766666689999999999999999999999999999999999999852 4889999999999999
Q ss_pred HHHHHHHHHHc---C---CcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcE
Q 007056 233 LYEILGEVIKV---G---ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 233 l~~~~~~~~~a---G---a~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 306 (620)
+.++++++.++ | +++|+||||+|+++|.++++++..+++.+|..++++|++|||||+|||+||+++|+++||++
T Consensus 158 l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~ 237 (284)
T cd07942 158 ALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADR 237 (284)
T ss_pred HHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCE
Confidence 99999999887 5 44999999999999999999999999998865568899999999999999999999999999
Q ss_pred EeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 307 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 307 Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
||+|++|+|||+||++||+++++|+. +|+.+++|+++|.++|+++++
T Consensus 238 id~~~~g~GeRaGN~~~E~lv~~l~~------~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 238 VEGTLFGNGERTGNVDLVTLALNLYS------QGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred EEeeCccCCccccchhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999985 378899999999999999874
No 18
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=7.7e-60 Score=484.42 Aligned_cols=262 Identities=30% Similarity=0.410 Sum_probs=246.1
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecc
Q 007056 77 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 156 (620)
Q Consensus 77 V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 156 (620)
.+|+|||||||+|++++.||+++|++|++.|+++||+.||+|+|.++|++++.++.+++.. +.+.+.+|.|
T Consensus 1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~---------~~~~v~~~~r 71 (262)
T cd07948 1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLG---------LKAKILTHIR 71 (262)
T ss_pred CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCC---------CCCcEEEEec
Confidence 3699999999999999999999999999999999999999999999999999999997641 2256788999
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHH
Q 007056 157 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 236 (620)
Q Consensus 157 ~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~ 236 (620)
++.+|+++++++ |++.|++++++||.|++.+++++++|+++.+.+++++||++|+. |+|++||++|++++++.++
T Consensus 72 ~~~~di~~a~~~----g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~-v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 72 CHMDDARIAVET----GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIE-VRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred CCHHHHHHHHHc----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeeCCCCHHHHHHH
Confidence 999999999886 89999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccC
Q 007056 237 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 316 (620)
Q Consensus 237 ~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGE 316 (620)
++.+.++|+++|+||||+|.++|++++++++.+++.++ ++|++|||||+|||+||+++|+++||++||+|++||||
T Consensus 147 ~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~----~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe 222 (262)
T cd07948 147 YRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS----CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE 222 (262)
T ss_pred HHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc
Confidence 99999999999999999999999999999999999875 67999999999999999999999999999999999999
Q ss_pred CcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 317 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 317 RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
|+||++||+|+++|+.++. .|+.+++|+++|+++|++|++
T Consensus 223 raGn~~~e~~~~~l~~~~~---~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 223 RNGITPLGGLIARMYTADP---EYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred ccCCccHHHHHHHHHhccc---cCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999987532 256789999999999999874
No 19
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=4.7e-59 Score=492.59 Aligned_cols=270 Identities=18% Similarity=0.281 Sum_probs=246.1
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-------hHHHHHHHHHHHhcccccccCC
Q 007056 74 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK-------EDFEAVRTIAKEVGNAVDAESG 146 (620)
Q Consensus 74 ~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-------~d~e~v~~i~~~~~~~~~~~~~ 146 (620)
|++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||. +| ++.+.++.+.+. . +
T Consensus 44 ~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~-~-------~ 114 (347)
T PLN02746 44 PKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNL-E-------G 114 (347)
T ss_pred CCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhc-c-------C
Confidence 567999999999999999999999999999999999999999999976 44 334566666542 1 1
Q ss_pred ccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEE------EE
Q 007056 147 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EF 220 (620)
Q Consensus 147 l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V------~f 220 (620)
..+.+|++ +.+|+++|+++ |.+.|++|+++||.|+++|+++|++|+++++.++|++||++|+. | .|
T Consensus 115 --~~~~~l~~-n~~die~A~~~----g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~-v~~~is~~f 186 (347)
T PLN02746 115 --ARFPVLTP-NLKGFEAAIAA----GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIP-VRGYVSCVV 186 (347)
T ss_pred --CceeEEcC-CHHHHHHHHHc----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeee
Confidence 23556654 89999999886 89999999999999999999999999999999999999999985 5 48
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHH
Q 007056 221 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 300 (620)
Q Consensus 221 ~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 300 (620)
+++|.+|++++++.++++.+.++|+++|+||||+|+++|.+++++|+.+++.+|. .+|++|||||+|||+||+++|+
T Consensus 187 g~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~lAA~ 263 (347)
T PLN02746 187 GCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPV---DKLAVHFHDTYGQALANILVSL 263 (347)
T ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCC---CeEEEEECCCCChHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999873 5799999999999999999999
Q ss_pred HhcCcEEeeccccccC------CcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCC
Q 007056 301 CAGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHK 369 (620)
Q Consensus 301 ~aGA~~Vd~Ti~GlGE------RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~ 369 (620)
++||++||+|++|||| |+||++||+|+++|+. +|+.+++|+++|.++++++++++|++++.+.
T Consensus 264 ~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~------~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~ 332 (347)
T PLN02746 264 QMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNG------LGVSTNVDLGKLMAAGDFISKHLGRPSGSKT 332 (347)
T ss_pred HhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999 9999999999999986 3788999999999999999999999988764
No 20
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=4.6e-58 Score=488.36 Aligned_cols=343 Identities=34% Similarity=0.503 Sum_probs=321.4
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 158 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 158 (620)
|+|||||||+|++++.|+.++|++|++.|+++||+.||+|+|..++++++.++.++... +...+.+|+|+.
T Consensus 1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 71 (344)
T TIGR02146 1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAASKQSRIDIEIIASLG---------LKANIVTHIRCR 71 (344)
T ss_pred CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhcC---------CCcEEEEECCCC
Confidence 68999999999999999999999999999999999999999999999988888877641 224688999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Q 007056 159 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 238 (620)
Q Consensus 159 ~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~ 238 (620)
.++++.+.++ +++.++++.+.|++|+..+++++.++.++++..+++++++.|++ +.++++++++++++++.++++
T Consensus 72 ~~~~~~a~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~-~~~~~~~~~~~~~~~~~~~~d 146 (344)
T TIGR02146 72 LDDAKVAVEL----GVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLE-VRFSAEDTFRSELADLLSIYE 146 (344)
T ss_pred HHHHHHHHHC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEeeCCCCCHHHHHHHHH
Confidence 9999988775 78899999999999999999999999999999999999999985 899999999999999999999
Q ss_pred HHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCc
Q 007056 239 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 318 (620)
Q Consensus 239 ~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERa 318 (620)
.+.++|++.++++||+|.++|.++..+|..+++..+ .+++++|+|||+|||+||+++|+.+||+++|+|++|||+|+
T Consensus 147 ~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~---~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~~~ 223 (344)
T TIGR02146 147 TVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVP---GVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGERN 223 (344)
T ss_pred HHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCC---CCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeCCC
Confidence 999999999999999999999999999999999876 47899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCcccccc
Q 007056 319 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEII 398 (620)
Q Consensus 319 GNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~~Ye~i 398 (620)
||++++.++..|... .|+. .+|++.+.++++.+...++.++++++|++|.++|.|++|+|+++++|+|.+|+++
T Consensus 224 G~~~l~~~~~~L~~~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~y~~~ 297 (344)
T TIGR02146 224 GITPLGGILARLYYH-----TPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRTYEFL 297 (344)
T ss_pred CCccHHHHHHHHHHh-----cCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCcccCCCC
Confidence 999999999888863 3443 3799999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCcccccceEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007056 399 SPEDIGLERSSEAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWHFK 448 (620)
Q Consensus 399 ~Pe~vG~~r~~~~~i~lg~~SG~~~i~~~l~~lG~~l~~~~~~~~~~~vk 448 (620)
+|+.+|+.| .++++++||+++++++|+++|++++++++.++++++|
T Consensus 298 ~~s~~g~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (344)
T TIGR02146 298 PPEVFGRKR----HILIARLTGKHAIKARKEKLGVKLIEEELKRVTAKIK 343 (344)
T ss_pred CHHHcCCcc----eEeeeccccHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 999999886 4899999999999999999999999999999999887
No 21
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=1.3e-58 Score=475.48 Aligned_cols=258 Identities=43% Similarity=0.577 Sum_probs=244.2
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 158 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 158 (620)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|||..+++|++.++.+.+... ...+.+|+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~---------~~~~~~~~r~~ 71 (259)
T cd07939 1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGL---------PARLIVWCRAV 71 (259)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCC---------CCEEEEeccCC
Confidence 689999999999999999999999999999999999999999999999999999887422 25789999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Q 007056 159 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 238 (620)
Q Consensus 159 ~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~ 238 (620)
.+|++++.++ |++.|++++++|+.|+++++|+|++|.++++.++++++|++|+. |.|+++|+++++++|+.++++
T Consensus 72 ~~~v~~a~~~----g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~ 146 (259)
T cd07939 72 KEDIEAALRC----GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDASRADPDFLIEFAE 146 (259)
T ss_pred HHHHHHHHhC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCCCCCHHHHHHHHH
Confidence 9999988765 89999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCc
Q 007056 239 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 318 (620)
Q Consensus 239 ~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERa 318 (620)
++.++|+++|+||||+|.++|++++++|+.+++++| ++|++|||||+|||+||+++|+++||++||+|++|||||+
T Consensus 147 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~a 222 (259)
T cd07939 147 VAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD----LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERA 222 (259)
T ss_pred HHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccc
Confidence 999999999999999999999999999999999986 5799999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 319 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 319 GNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
||++||+++++|+.. .|+.+++|+++|.++++++++
T Consensus 223 GN~~tE~lv~~l~~~-----~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 223 GNAALEEVVMALKHL-----YGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred cCcCHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHh
Confidence 999999999999974 378899999999999999886
No 22
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=1.8e-58 Score=476.78 Aligned_cols=268 Identities=61% Similarity=0.892 Sum_probs=250.6
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 158 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 158 (620)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|||..+|+|++.++.+.+..++ ..+.+|+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~---------~~~~~l~r~~ 71 (268)
T cd07940 1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLN---------AEICGLARAV 71 (268)
T ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCC---------CEEEEEccCC
Confidence 6899999999999999999999999999999999999999999899999999999875432 4788999999
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Q 007056 159 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 238 (620)
Q Consensus 159 ~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~ 238 (620)
.+|++.++++.+..+++.|++|.++||.|+++|++++++++++.+.+++++++++|+. |+|+++|+++++++|+.++++
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~ 150 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLD-VEFSAEDATRTDLDFLIEVVE 150 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEeeecCCCCCHHHHHHHHH
Confidence 9999999998655569999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCc
Q 007056 239 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 318 (620)
Q Consensus 239 ~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERa 318 (620)
.+.++|+++|+||||+|.++|++++++++.+++++|+. +++|++|+|||+|||+||+++|+++||++||+|++|||||+
T Consensus 151 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~-~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~a 229 (268)
T cd07940 151 AAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNI-KVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERA 229 (268)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC-ceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccccc
Confidence 99999999999999999999999999999999999742 37899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 319 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 319 GNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
||++||+|+.+|+.+++. +|+.+++|+++|.++++++++
T Consensus 230 GN~~tE~lv~~L~~~~~~--~~~~t~idl~~l~~~~~~~~~ 268 (268)
T cd07940 230 GNAALEEVVMALKTRYDY--YGVETGIDTEELYETSRLVSR 268 (268)
T ss_pred ccccHHHHHHHHHhcccc--cCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999986532 368999999999999999863
No 23
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=1.5e-57 Score=473.23 Aligned_cols=267 Identities=19% Similarity=0.343 Sum_probs=243.4
Q ss_pred CCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEe-------cCCCChhHHHHHHHHHHHhcccccccCC
Q 007056 74 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAG-------FPAASKEDFEAVRTIAKEVGNAVDAESG 146 (620)
Q Consensus 74 ~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvG-------fP~~s~~d~e~v~~i~~~~~~~~~~~~~ 146 (620)
|++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+| +|..+ ++++.++.|.+. ++
T Consensus 2 ~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~-d~~e~~~~l~~~-~~------- 72 (287)
T PRK05692 2 PKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA-DAAEVMAGIQRR-PG------- 72 (287)
T ss_pred CCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc-cHHHHHHhhhcc-CC-------
Confidence 456999999999999999999999999999999999999999999 44433 246777777642 11
Q ss_pred ccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEE------EE
Q 007056 147 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EF 220 (620)
Q Consensus 147 l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V------~f 220 (620)
..+.+|. .+.+|+++|+++ |.+.|++|+++||.|+++|+++|++|+++++.++|++||++|+. | .|
T Consensus 73 --~~~~~l~-~~~~~ie~A~~~----g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~-v~~~i~~~~ 144 (287)
T PRK05692 73 --VTYAALT-PNLKGLEAALAA----GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVR-VRGYVSCVL 144 (287)
T ss_pred --CeEEEEe-cCHHHHHHHHHc----CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEEEEe
Confidence 3566776 489999999876 89999999999999999999999999999999999999999985 4 46
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHH
Q 007056 221 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 300 (620)
Q Consensus 221 ~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 300 (620)
++++.++++++++.++++++.++|+++|+||||+|+++|.+++++++.+++++|+ ++|++|||||+|||+||+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~i~~H~Hn~~Gla~AN~laA~ 221 (287)
T PRK05692 145 GCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPA---ERLAGHFHDTYGQALANIYASL 221 (287)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCC---CeEEEEecCCCCcHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999874 6899999999999999999999
Q ss_pred HhcCcEEeeccccccC------CcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCC
Q 007056 301 CAGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQ 366 (620)
Q Consensus 301 ~aGA~~Vd~Ti~GlGE------RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~ 366 (620)
++||++||+|++|||| |+||++||+++++|+. .|+++++|++.|.++++++++++|+++|
T Consensus 222 ~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~------~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 222 EEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHG------LGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred HhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999 9999999999999986 3788999999999999999999999875
No 24
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=2.2e-57 Score=469.68 Aligned_cols=264 Identities=32% Similarity=0.498 Sum_probs=240.4
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 158 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~ 158 (620)
|+|||||||+|++++.|++++|++|++.|+++||++||+|||.++|+++++++++++.... ...+.+|+|++
T Consensus 1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 72 (273)
T cd07941 1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLK--------HAKLAAFGSTR 72 (273)
T ss_pred CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCC--------CcEEEEEeccc
Confidence 6899999999999999999999999999999999999999999999999999988874210 14688899887
Q ss_pred hhhHH----HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC---CCCCCCHH
Q 007056 159 ERDIK----TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRSDRK 231 (620)
Q Consensus 159 ~~dI~----~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e---d~~r~d~e 231 (620)
..++. +.++....+|.+.|+++.++||.|++.++|+++++.++++.++++++|++|+. |++++| |+++++++
T Consensus 73 ~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~~~~d~~~~~~~ 151 (273)
T cd07941 73 RAGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGRE-VIFDAEHFFDGYKANPE 151 (273)
T ss_pred ccCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEeEEeccccCCCCHH
Confidence 76652 34555666799999999999999999999999999999999999999999985 888777 77899999
Q ss_pred HHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 232 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
|+.++++++.++|+++|+||||+|.++|++++++++.+++++|+ ++|++|||||+|||+||+++|+++||++||+|+
T Consensus 152 ~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~ 228 (273)
T cd07941 152 YALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPG---VPLGIHAHNDSGLAVANSLAAVEAGATQVQGTI 228 (273)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCC---CeeEEEecCCCCcHHHHHHHHHHcCCCEEEEec
Confidence 99999999999999999999999999999999999999999974 789999999999999999999999999999999
Q ss_pred ccccCCcCcccHHHHHHHHHhccccccCccc--cCCChhhHHHHHHHHHH
Q 007056 312 NGIGERAGNASLEEVVMAFKCRGEHILGGLY--TGINTRHIVMASKMVEE 359 (620)
Q Consensus 312 ~GlGERaGNa~lEevv~~L~~~~~~~~~G~~--t~idl~~L~~~s~~v~~ 359 (620)
+|||||+||++||+++.+|+.+. |+. +++|++.|+++|++|++
T Consensus 229 ~GlGeraGn~~~e~~~~~L~~~~-----~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 229 NGYGERCGNANLCSIIPNLQLKM-----GYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred cccccccccccHHHHHHHHHhcc-----CCCCcCccCHHHHHHHHHHHhC
Confidence 99999999999999999998642 333 58999999999999874
No 25
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=4.1e-56 Score=460.01 Aligned_cols=260 Identities=28% Similarity=0.386 Sum_probs=236.8
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcC-----CCEEEEecCCCChhHHHHHHHHHHHhcccccccCCc-cce
Q 007056 77 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLG-----VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPV 150 (620)
Q Consensus 77 V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~G-----vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~ 150 (620)
|+|+|||||||+|+++.. ++++|++|++.|+++| |+.||++ +.++.|++.++++.+. ++ .+.
T Consensus 1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~--s~~~~d~~~v~~~~~~---------~~~~~~ 68 (279)
T cd07947 1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFF--LYTEKDREAVEACLDR---------GYKFPE 68 (279)
T ss_pred CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEec--CcChHHHHHHHHHHHc---------CCCCCE
Confidence 579999999999999985 9999999999999999 9999994 4577999999998863 12 257
Q ss_pred EEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH
Q 007056 151 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 230 (620)
Q Consensus 151 i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~ 230 (620)
+++|.|++.+|+++++++ |++.|++|+|+||.|+++|+|+|++|+++++.+++++||++|+. |.|++||++|+|+
T Consensus 69 v~~~~r~~~~die~A~~~----g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~~r~d~ 143 (279)
T cd07947 69 VTGWIRANKEDLKLVKEM----GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIK-PRCHLEDITRADI 143 (279)
T ss_pred EEEEecCCHHHHHHHHHc----CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCe-EEEEEEcccCCCc
Confidence 899999999999999876 89999999999999999999999999999999999999999985 9999999999988
Q ss_pred H-----HHHHHHHHHHHcCCc-EEeecCCccccCH-------HHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHH
Q 007056 231 K-----FLYEILGEVIKVGAT-TLNIPDTVGITMP-------TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 297 (620)
Q Consensus 231 e-----~l~~~~~~~~~aGa~-~I~L~DTvG~~~P-------~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsl 297 (620)
+ |+.++++.+.++|++ +|+||||+|+++| .+++++++.+++.++ .++++|++|||||+|||+||++
T Consensus 144 ~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~-~p~~~l~~H~Hn~~Gla~AN~l 222 (279)
T cd07947 144 YGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCG-VPSENLEWHGHNDFYKAVANAV 222 (279)
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcC-CCCceEEEEecCCCChHHHHHH
Confidence 3 888888888889999 8999999999988 689999999998843 2247799999999999999999
Q ss_pred HHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 298 AGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 298 aAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
+|+++||++||+|++|||||+||++||+++++|+.. +|+.+++|+++|.++++++++
T Consensus 223 aA~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~-----~g~~t~idl~~l~~~~~~~~~ 279 (279)
T cd07947 223 AAWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQL-----KGNFDGMNLEVITEIAEYFEK 279 (279)
T ss_pred HHHHhCCCEEEEecccccccccchhHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999863 378899999999999999763
No 26
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=9e-56 Score=457.45 Aligned_cols=256 Identities=20% Similarity=0.354 Sum_probs=229.9
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCC---Ch--hHHH-HHHHHHHHhcccccccCCccceEE
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAA---SK--EDFE-AVRTIAKEVGNAVDAESGYVPVIC 152 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~---s~--~d~e-~v~~i~~~~~~~~~~~~~l~~~i~ 152 (620)
|+|||||||+|+++..||+++|++|++.|+++||++||+|++.+ .| .|.+ .++.+.. . . ..+++
T Consensus 1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~-~----~-----~~~~~ 70 (274)
T cd07938 1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR-R----P-----GVRYS 70 (274)
T ss_pred CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc-C----C-----CCEEE
Confidence 68999999999999999999999999999999999999995322 12 1333 3333322 1 1 14788
Q ss_pred eecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEE------EEcCCCCC
Q 007056 153 GLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EFSPEDAG 226 (620)
Q Consensus 153 ~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V------~f~~ed~~ 226 (620)
+|+ ++.+|+++++++ |.+.|++|.++||.|+++|+++++++.++++.+.++++|++|+. | .|+++|.+
T Consensus 71 ~~~-~~~~dv~~A~~~----g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~~ 144 (274)
T cd07938 71 ALV-PNLRGAERALAA----GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLR-VRGYVSTAFGCPYEG 144 (274)
T ss_pred EEC-CCHHHHHHHHHc----CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeEecCCCCC
Confidence 886 789999999876 89999999999999999999999999999999999999999986 5 58888999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcE
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 306 (620)
+++++|+.++++.+.++|+++|+||||+|.++|.+++++|+.+++++|+ ++|++|||||+|||+||+++|+++||++
T Consensus 145 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~laA~~aGa~~ 221 (274)
T cd07938 145 EVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD---EKLALHFHDTRGQALANILAALEAGVRR 221 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC---CeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 9999999999999999999999999999999999999999999999874 7899999999999999999999999999
Q ss_pred Eeecccccc------CCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 307 VEVTINGIG------ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 307 Vd~Ti~GlG------ERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
||+|++||| ||+||++||+++++|+. .|+++++|+++|.++++++++
T Consensus 222 id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~------~g~~t~idl~~l~~~~~~~~~ 274 (274)
T cd07938 222 FDSSVGGLGGCPFAPGATGNVATEDLVYMLEG------MGIETGIDLDKLLAAARWISE 274 (274)
T ss_pred EEEeccccCCCCCCCCccCCcCHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHhC
Confidence 999999999 79999999999999986 378899999999999998863
No 27
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=5.1e-53 Score=433.12 Aligned_cols=257 Identities=38% Similarity=0.568 Sum_probs=240.5
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCC------hhHHHHHHHHHHHhcccccccCCccceEEe
Q 007056 80 FDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAAS------KEDFEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 80 ~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
+|||||||+|++++.|++++|++|++.|+++||++||+|+|..+ +.+++.++.+.+..++ ..+.+
T Consensus 1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~---------~~~~~ 71 (265)
T cd03174 1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPN---------VKLQA 71 (265)
T ss_pred CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCC---------cEEEE
Confidence 59999999999999999999999999999999999999999877 6788999998875321 46788
Q ss_pred ecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCC--CCHH
Q 007056 154 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR--SDRK 231 (620)
Q Consensus 154 ~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r--~d~e 231 (620)
|+|+..++++++.++ |.+.|+++.+.|+.|.+.++++++++.++.+.++++++++.|++ |.++.+++++ ++++
T Consensus 72 l~~~~~~~i~~a~~~----g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~ 146 (265)
T cd03174 72 LVRNREKGIERALEA----GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPE 146 (265)
T ss_pred EccCchhhHHHHHhC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHH
Confidence 999888888887765 89999999999999999999999999999999999999999985 9999999999 9999
Q ss_pred HHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 232 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
++.++++.+.++|++.|+|+||+|.++|+++.++++.+++.+++ ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~---~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~ 223 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD---VPLGLHTHNTLGLAVANSLAALEAGADRVDGSV 223 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC---CeEEEEeCCCCChHHHHHHHHHHcCCCEEEecc
Confidence 99999999999999999999999999999999999999999874 789999999999999999999999999999999
Q ss_pred ccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 312 NGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 312 ~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
+|||||+||++||+++.+|+.+ |+.+++|++.|.++++++++
T Consensus 224 ~G~G~~~Gn~~~e~~~~~l~~~------~~~~~~~~~~l~~~~~~~~~ 265 (265)
T cd03174 224 NGLGERAGNAATEDLVAALEGL------GIDTGIDLEKLLEISRYVEE 265 (265)
T ss_pred ccccccccCccHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999974 57899999999999998863
No 28
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=9.6e-53 Score=425.80 Aligned_cols=236 Identities=42% Similarity=0.664 Sum_probs=219.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHH
Q 007056 85 RDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 164 (620)
Q Consensus 85 RDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 164 (620)
|||+|++++.|+.++|++|++.|+++||++||+|+|..++++++.++.+.+...+ ..+.+|+|+..++++.
T Consensus 1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~i~~ 71 (237)
T PF00682_consen 1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN---------ARLQALCRANEEDIER 71 (237)
T ss_dssp THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS---------SEEEEEEESCHHHHHH
T ss_pred CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc---------cccceeeeehHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887543 4788999999999999
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG 244 (620)
+++.++.+|.+.++++.++||.|++.++++++++.++++.++++++|++|.+ |.|+++|+++++++++.++++.+.++|
T Consensus 72 ~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 72 AVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYE-VAFGCEDASRTDPEELLELAEALAEAG 150 (237)
T ss_dssp HHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSE-EEEEETTTGGSSHHHHHHHHHHHHHHT
T ss_pred HHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCc-eEeCccccccccHHHHHHHHHHHHHcC
Confidence 9998889999999999999999999999999999999999999999999985 999999999999999999999999999
Q ss_pred CcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHH
Q 007056 245 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 324 (620)
Q Consensus 245 a~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lE 324 (620)
+++|+||||+|.++|++++++|+.+++++|+ ++|++|+|||+|||+||+++|+++||++||+|++|||||+||++||
T Consensus 151 ~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~---~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le 227 (237)
T PF00682_consen 151 ADIIYLADTVGIMTPEDVAELVRALREALPD---IPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLE 227 (237)
T ss_dssp -SEEEEEETTS-S-HHHHHHHHHHHHHHSTT---SEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHH
T ss_pred CeEEEeeCccCCcCHHHHHHHHHHHHHhccC---CeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHH
Confidence 9999999999999999999999999999985 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 007056 325 EVVMAFKCR 333 (620)
Q Consensus 325 evv~~L~~~ 333 (620)
+++++|+..
T Consensus 228 ~lv~~L~~~ 236 (237)
T PF00682_consen 228 ELVAALERM 236 (237)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 999999863
No 29
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=1.7e-52 Score=433.58 Aligned_cols=246 Identities=24% Similarity=0.281 Sum_probs=223.8
Q ss_pred EEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCC--------CChhHHHHHHHHHHHhcccccccCCccc
Q 007056 79 VFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAESGYVP 149 (620)
Q Consensus 79 I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~--------~s~~d~e~v~~i~~~~~~~~~~~~~l~~ 149 (620)
|+|||||||+|++ +..|+.++|++|++.|+++||+.||+|+|+ .+.++++.++.+.+..++ .
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~---------~ 71 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPN---------T 71 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCC---------C
Confidence 5899999999998 899999999999999999999999999997 377889999999986543 3
Q ss_pred eEEeeccc-------------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 007056 150 VICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 216 (620)
Q Consensus 150 ~i~~~~r~-------------~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~ 216 (620)
.+++|+|+ .+.|++++.++ |++.|+++.+.|+ ++++.++++++|++|++
T Consensus 72 ~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~----g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~ 133 (275)
T cd07937 72 PLQMLLRGQNLVGYRHYPDDVVELFVEKAAKN----GIDIFRIFDALND--------------VRNLEVAIKAVKKAGKH 133 (275)
T ss_pred ceehhcccccccCccCCCcHHHHHHHHHHHHc----CCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCe
Confidence 57888987 56777776654 8999999999987 57888999999999975
Q ss_pred EEEE--cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHH
Q 007056 217 DVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 294 (620)
Q Consensus 217 ~V~f--~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA 294 (620)
|.+ +.+++++++++|+.++++++.++|+++|+|+||+|.++|.++.++|+.++++++ ++|++|||||+|||+|
T Consensus 134 -v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~a 208 (275)
T cd07937 134 -VEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG----LPIHLHTHDTSGLAVA 208 (275)
T ss_pred -EEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC----CeEEEEecCCCChHHH
Confidence 665 556789999999999999999999999999999999999999999999999985 6799999999999999
Q ss_pred HHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhC
Q 007056 295 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 362 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 362 (620)
|+++|+++||++||+|++|||||+||++||+++++|+.+ |+.+++|+++|.+++++++++..
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~------g~~~~~dl~~l~~~~~~v~~~~~ 270 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGT------GRDTGLDLEKLEEISEYFEEVRK 270 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHcc------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999963 67899999999999999998764
No 30
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=2.1e-52 Score=430.83 Aligned_cols=247 Identities=20% Similarity=0.284 Sum_probs=220.6
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhH---------HHHHHHHHHHhcccccccCCccc
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKED---------FEAVRTIAKEVGNAVDAESGYVP 149 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d---------~e~v~~i~~~~~~~~~~~~~l~~ 149 (620)
|+|||||||+|.+|+.|+.++|++|++.|+++||++||+|||..++.+ .+.++++.+.... ..
T Consensus 1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~ 72 (266)
T cd07944 1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKG--------NT 72 (266)
T ss_pred CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhcc--------CC
Confidence 689999999999999999999999999999999999999999877644 6888888875321 14
Q ss_pred eEEeecccch---hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 007056 150 VICGLSRCNE---RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG 226 (620)
Q Consensus 150 ~i~~~~r~~~---~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~ 226 (620)
.+++|+|+.. ++++.+.+ +|++.|+++.+.+ .++.+.++++++|++|++ |.|+++|++
T Consensus 73 ~~~~~~~~~~~~~~~l~~a~~----~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~-v~~~~~~a~ 133 (266)
T cd07944 73 KIAVMVDYGNDDIDLLEPASG----SVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYE-VFFNLMAIS 133 (266)
T ss_pred EEEEEECCCCCCHHHHHHHhc----CCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCe-EEEEEEeec
Confidence 7888988875 56665544 5899999988654 477889999999999985 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcE
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 306 (620)
+++++++.++++.+.++|+++|+|+||+|.++|++++++++.+++++++ +++|++|||||+|||+||+++|+++||++
T Consensus 134 ~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~~i~~H~Hn~~Gla~AN~laA~~aGa~~ 211 (266)
T cd07944 134 GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDK--DIKLGFHAHNNLQLALANTLEAIELGVEI 211 (266)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCC--CceEEEEeCCCccHHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999999999999999999864 48899999999999999999999999999
Q ss_pred EeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHH-HHHHHHh
Q 007056 307 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS-KMVEEYT 361 (620)
Q Consensus 307 Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s-~~v~~~~ 361 (620)
||+|++|||||+||++||+++++|+.+ +.+++|+++|.+++ +++..+.
T Consensus 212 vd~s~~G~G~~aGN~~~E~~v~~l~~~-------~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 212 IDATVYGMGRGAGNLPTELLLDYLNNK-------FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred EEEecccCCCCcCcHHHHHHHHHHHHh-------hccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999973 35889999999999 7777654
No 31
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=7.7e-52 Score=426.26 Aligned_cols=246 Identities=25% Similarity=0.316 Sum_probs=220.5
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCC-----------ChhHHHHHHHHHHHhcccccccC
Q 007056 77 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAA-----------SKEDFEAVRTIAKEVGNAVDAES 145 (620)
Q Consensus 77 V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~-----------s~~d~e~v~~i~~~~~~~~~~~~ 145 (620)
|+|+|||||||+|++++.|++++|++|++.|+++||++||+|||.. ...+++.++++.+..++
T Consensus 1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~------ 74 (263)
T cd07943 1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQ------ 74 (263)
T ss_pred CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccC------
Confidence 5799999999999999999999999999999999999999996421 12467888888765432
Q ss_pred CccceEEeec---ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC
Q 007056 146 GYVPVICGLS---RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 222 (620)
Q Consensus 146 ~l~~~i~~~~---r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ 222 (620)
..+.+|. +++.+|+++++++ |++.|+++.+.|+.| .+.++++++|++|++ |.+++
T Consensus 75 ---~~~~~~~~~~~~~~~~i~~a~~~----g~~~iri~~~~s~~~--------------~~~~~i~~ak~~G~~-v~~~~ 132 (263)
T cd07943 75 ---AKLGVLLLPGIGTVDDLKMAADL----GVDVVRVATHCTEAD--------------VSEQHIGAARKLGMD-VVGFL 132 (263)
T ss_pred ---CEEEEEecCCccCHHHHHHHHHc----CCCEEEEEechhhHH--------------HHHHHHHHHHHCCCe-EEEEE
Confidence 2455564 7888999888765 899999999999865 467899999999985 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh
Q 007056 223 EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 302 (620)
Q Consensus 223 ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 302 (620)
+++++++++++.++++++.++|+++|+||||+|.++|++++++++.++++++. ++|++|||||+|||+||+++|+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hn~~GlA~AN~laAi~a 209 (263)
T cd07943 133 MMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP---TPVGFHGHNNLGLAVANSLAAVEA 209 (263)
T ss_pred EeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC---ceEEEEecCCcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999873 589999999999999999999999
Q ss_pred cCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 303 GARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 303 GA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
||++||+|++|||||+||++||+++.+|+. .|+.+++|+++|.++++++.+
T Consensus 210 Ga~~vd~s~~GlG~~aGN~~~E~lv~~L~~------~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 210 GATRIDGSLAGLGAGAGNTPLEVLVAVLER------MGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred CCCEEEeecccccCCcCCccHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999986 367899999999999998764
No 32
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.7e-50 Score=452.84 Aligned_cols=310 Identities=21% Similarity=0.290 Sum_probs=266.7
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEe--------cCCCChhHHHHHHHHHHHhcccccccC
Q 007056 75 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG--------FPAASKEDFEAVRTIAKEVGNAVDAES 145 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gvd~IEvG--------fP~~s~~d~e~v~~i~~~~~~~~~~~~ 145 (620)
++|.|+|||||||+|++ +..|++++|+.|++.|+++||+.||++ +|..++.+|+.+|.+++.+++......
T Consensus 3 k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml 82 (593)
T PRK14040 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQML 82 (593)
T ss_pred CccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEE
Confidence 46999999999999999 679999999999999999999999994 455788899999999998766422110
Q ss_pred CccceEEeecc----cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---EE
Q 007056 146 GYVPVICGLSR----CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DV 218 (620)
Q Consensus 146 ~l~~~i~~~~r----~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~---~V 218 (620)
....++.+|+| +.+.+++.+.+ +|++.|++|.+.+|+ +++..+++++|++|.. .+
T Consensus 83 ~Rg~n~vg~~~ypddvv~~~v~~a~~----~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i 144 (593)
T PRK14040 83 LRGQNLLGYRHYADDVVERFVERAVK----NGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTL 144 (593)
T ss_pred ecCcceeccccCcHHHHHHHHHHHHh----cCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEE
Confidence 01124566776 44445665554 599999999999874 4677899999999975 14
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHH
Q 007056 219 EFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 298 (620)
Q Consensus 219 ~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 298 (620)
+| .+...++++|+.++++.+.++||++|+||||+|.++|.+++++|+.+++.++ ++|++|||||+|||+||+++
T Consensus 145 ~y--t~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~GlA~An~la 218 (593)
T PRK14040 145 SY--TTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD----VPLHLHCHATTGLSTATLLK 218 (593)
T ss_pred EE--eeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCchHHHHHHH
Confidence 44 2333678999999999999999999999999999999999999999999883 78999999999999999999
Q ss_pred HHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCcccee
Q 007056 299 GACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFA 378 (620)
Q Consensus 299 Av~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~ 378 (620)
|++|||++||+|++|||||+||++||+++++|+. .|+++++|++.|.+++++++++.
T Consensus 219 AieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~------~~~~~gidl~~l~~is~~~~~v~----------------- 275 (593)
T PRK14040 219 AIEAGIDGVDTAISSMSMTYGHSATETLVATLEG------TERDTGLDILKLEEIAAYFREVR----------------- 275 (593)
T ss_pred HHHcCCCEEEeccccccccccchhHHHHHHHHHh------cCCCcCCCHHHHHHHHHHHHHHH-----------------
Confidence 9999999999999999999999999999999986 36789999999999999999987
Q ss_pred eeccccccccccCCccccccCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 007056 379 HESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFKAVAE 452 (620)
Q Consensus 379 h~sGiH~dgi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~ 452 (620)
..|++++|+.+|..+ ++.+...+|. +++...|+++|+. +.+.++++++++.-.
T Consensus 276 --------------~~Y~~~~~~~~~~~~----~v~~~e~PGG~~Snl~~ql~~~g~~---~~~~evl~e~~~v~~ 330 (593)
T PRK14040 276 --------------KKYAKFEGQLKGVDS----RILVAQVPGGMLTNMESQLKEQGAA---DKLDEVLAEIPRVRE 330 (593)
T ss_pred --------------HHhccCCcccccCcc----cEEEEcCCCchHHHHHHHHHHCCCH---HHHHHHHHHHHHHHH
Confidence 569999999999876 5999999999 9999999999987 778888888887643
No 33
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=1.6e-49 Score=446.13 Aligned_cols=298 Identities=21% Similarity=0.294 Sum_probs=260.1
Q ss_pred EEeCCCcccCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEe----c----CCCChhHHHHHHHHHHHhcccccccCCccc
Q 007056 79 VFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----F----PAASKEDFEAVRTIAKEVGNAVDAESGYVP 149 (620)
Q Consensus 79 I~DtTLRDG~Qs~g-~~fs~~~Kl~Ia~~L~~~Gvd~IEvG----f----P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~ 149 (620)
|+|||||||+|+++ ..|++++|++|++.|+++||+.||+| | +..++++|+.++.+.+..++ .
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~---------~ 71 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPN---------T 71 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCC---------C
Confidence 68999999999995 59999999999999999999999997 3 44678899999999876543 3
Q ss_pred eEEeeccc-------------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 007056 150 VICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 216 (620)
Q Consensus 150 ~i~~~~r~-------------~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~ 216 (620)
.+++|+|. .+.+++++++ +|++.|++|.+.||. +++..+++++|++|+.
T Consensus 72 ~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~----~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~ 133 (582)
T TIGR01108 72 PLQMLLRGQNLLGYRHYADDVVERFVKKAVE----NGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAH 133 (582)
T ss_pred EEEEEEccccccccccCchhhHHHHHHHHHH----CCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCE
Confidence 67788775 2334555554 599999999999984 3577888999999985
Q ss_pred EEEEc--CCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHH
Q 007056 217 DVEFS--PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 294 (620)
Q Consensus 217 ~V~f~--~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA 294 (620)
|+++ ..+..+++++|+.++++++.++||++|+||||+|.++|.+++++|+.+++.++ ++|++|||||+|||+|
T Consensus 134 -v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~----~pi~~H~Hnt~Gla~A 208 (582)
T TIGR01108 134 -AQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG----LPVHLHSHATTGMAEM 208 (582)
T ss_pred -EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC----CceEEEecCCCCcHHH
Confidence 6653 22344689999999999999999999999999999999999999999999985 6799999999999999
Q ss_pred HHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCc
Q 007056 295 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGA 374 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~ 374 (620)
|+++|+++||++||+|++|||||+||++||+++++|+. .|+++++|+++|.++++++++
T Consensus 209 n~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~------~g~~tgid~~~L~~l~~~~~~--------------- 267 (582)
T TIGR01108 209 ALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRG------TGYDTGLDIELLLEIAAYFRE--------------- 267 (582)
T ss_pred HHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHh------cCCCcccCHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999985 378899999999999999998
Q ss_pred cceeeeccccccccccCCccccccCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 007056 375 NAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFKAVAE 452 (620)
Q Consensus 375 naF~h~sGiH~dgi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~ 452 (620)
+.| .|++|+|+.+|..+ ++.+...+|. +++...|+++|+. +.+.++++++++.-.
T Consensus 268 -------------v~~---~Y~~~~~~~~~~~~----~v~~~e~pGG~~snl~~ql~~~g~~---~~~~~vl~e~~~v~~ 324 (582)
T TIGR01108 268 -------------VRK---KYSQFEGQLKGPDS----RILVAQVPGGMLSNLESQLKEQNAL---DKLDEVLEEIPRVRE 324 (582)
T ss_pred -------------HHH---HhhcCCCcccCCCc----cEEEEcCCCchHHHHHHHHHHCCCH---HHHHHHHHHHHHHHH
Confidence 333 69999999999876 5999999999 9999999999986 778888888887643
No 34
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=3.1e-49 Score=419.26 Aligned_cols=249 Identities=25% Similarity=0.324 Sum_probs=219.5
Q ss_pred CceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCC-----------ChhHHHHHHHHHHHhcccccc
Q 007056 75 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAA-----------SKEDFEAVRTIAKEVGNAVDA 143 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~-----------s~~d~e~v~~i~~~~~~~~~~ 143 (620)
++|+|+|||||||+|++++.|++++|++|++.|+++||++||+||+.- ...+++.++.+.+..++.
T Consensus 2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~--- 78 (337)
T PRK08195 2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQA--- 78 (337)
T ss_pred CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCC---
Confidence 469999999999999999999999999999999999999999964310 112678888887754432
Q ss_pred cCCccceEEee---cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Q 007056 144 ESGYVPVICGL---SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF 220 (620)
Q Consensus 144 ~~~l~~~i~~~---~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f 220 (620)
++.+| ++++.+|++++.++ |++.|+++...++. +.+.+.++++|++|++ |.+
T Consensus 79 ------~~~~ll~pg~~~~~dl~~a~~~----gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~-v~~ 133 (337)
T PRK08195 79 ------KIAALLLPGIGTVDDLKMAYDA----GVRVVRVATHCTEA--------------DVSEQHIGLARELGMD-TVG 133 (337)
T ss_pred ------EEEEEeccCcccHHHHHHHHHc----CCCEEEEEEecchH--------------HHHHHHHHHHHHCCCe-EEE
Confidence 34444 45688899988775 89999998876653 3468899999999986 899
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHH
Q 007056 221 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 300 (620)
Q Consensus 221 ~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 300 (620)
+++++++++++++.++++.+.++|+++|+|+||+|.++|++++++|+.+++++++ +++|++|+|||+|||+||+++|+
T Consensus 134 ~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~--~i~ig~H~HnnlGla~ANslaAi 211 (337)
T PRK08195 134 FLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKP--DTQVGFHGHNNLGLGVANSLAAV 211 (337)
T ss_pred EEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCC--CCeEEEEeCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999953 58899999999999999999999
Q ss_pred HhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 301 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 301 ~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
++||++||+|++|||+|+||++||++++.|+. +|+++++|+++|.++++.+..
T Consensus 212 ~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~------~g~~tgidl~~l~~~a~~~~~ 264 (337)
T PRK08195 212 EAGATRIDGSLAGLGAGAGNTPLEVLVAVLDR------MGWETGVDLYKLMDAAEDLVR 264 (337)
T ss_pred HhCCCEEEecChhhcccccCccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999986 378899999999999988764
No 35
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=7.2e-49 Score=415.64 Aligned_cols=246 Identities=26% Similarity=0.320 Sum_probs=218.5
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEec-------------CCCChhHHHHHHHHHHHhccccc
Q 007056 76 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF-------------PAASKEDFEAVRTIAKEVGNAVD 142 (620)
Q Consensus 76 ~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf-------------P~~s~~d~e~v~~i~~~~~~~~~ 142 (620)
+|+|+|||||||+|++++.|++++|++|++.|+++||++||+|+ |.. .+++.++.+++.+++.
T Consensus 2 ~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~--~~~e~i~~~~~~~~~~-- 77 (333)
T TIGR03217 2 KLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAH--TDLEYIEAAADVVKRA-- 77 (333)
T ss_pred CcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCC--ChHHHHHHHHHhCCCC--
Confidence 58999999999999999999999999999999999999999964 322 3678888888765432
Q ss_pred ccCCccceEEeec---ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE
Q 007056 143 AESGYVPVICGLS---RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE 219 (620)
Q Consensus 143 ~~~~l~~~i~~~~---r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~ 219 (620)
.+.+|. +++.+|++++.++ |++.|+++...++.+ .+.+.++++|++|++ |.
T Consensus 78 -------~~~~ll~pg~~~~~dl~~a~~~----gvd~iri~~~~~e~d--------------~~~~~i~~ak~~G~~-v~ 131 (333)
T TIGR03217 78 -------KVAVLLLPGIGTVHDLKAAYDA----GARTVRVATHCTEAD--------------VSEQHIGMARELGMD-TV 131 (333)
T ss_pred -------EEEEEeccCccCHHHHHHHHHC----CCCEEEEEeccchHH--------------HHHHHHHHHHHcCCe-EE
Confidence 344443 5688999888775 899999988766543 467899999999986 88
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH
Q 007056 220 FSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 299 (620)
Q Consensus 220 f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 299 (620)
++++++++++++++.++++.+.++|+++|+|+||+|.++|+++.++|+.+++++++ +++|++|+|||+|||+||+++|
T Consensus 132 ~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~--~i~ig~H~HnnlGla~ANslaA 209 (333)
T TIGR03217 132 GFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKP--ETQVGFHAHHNLSLAVANSIAA 209 (333)
T ss_pred EEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCC--CceEEEEeCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999863 4889999999999999999999
Q ss_pred HHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHH
Q 007056 300 ACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 359 (620)
Q Consensus 300 v~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~ 359 (620)
+++||++||+|++|||+|+||++||+++++|+. +|+.+++|+.+|.++++.+-.
T Consensus 210 i~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~------~g~~tgidl~~l~~~a~~~v~ 263 (333)
T TIGR03217 210 IEAGATRIDASLRGLGAGAGNAPLEVFVAVLDR------LGWNTGCDLFKLMDAAEDIVR 263 (333)
T ss_pred HHhCCCEEEeecccccccccCccHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 478899999999999976653
No 36
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=2.1e-48 Score=438.33 Aligned_cols=301 Identities=21% Similarity=0.272 Sum_probs=262.3
Q ss_pred CceEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhcccccccC
Q 007056 75 NYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 145 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~g-~~fs~~~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 145 (620)
++|.|+|||||||.|+++ ..|++++|++|++.|+++|++.||++ |+. .++++|+.++++++.+++.
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~----- 76 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNT----- 76 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCC-----
Confidence 469999999999999996 58999999999999999999999997 443 4678899999999876543
Q ss_pred CccceEEeeccc-------------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 007056 146 GYVPVICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS 212 (620)
Q Consensus 146 ~l~~~i~~~~r~-------------~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~ 212 (620)
.+.+|+|. .+.+++++++ +|++.|++|.+.||+ +++..+++++|+
T Consensus 77 ----~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~----~Gvd~irif~~lnd~--------------~n~~~~i~~ak~ 134 (592)
T PRK09282 77 ----PLQMLLRGQNLVGYRHYPDDVVEKFVEKAAE----NGIDIFRIFDALNDV--------------RNMEVAIKAAKK 134 (592)
T ss_pred ----EEEEEeccccccccccccchhhHHHHHHHHH----CCCCEEEEEEecChH--------------HHHHHHHHHHHH
Confidence 46666664 3344555544 599999999999985 356788899999
Q ss_pred cCCCEEEE--cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcc
Q 007056 213 LGCDDVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG 290 (620)
Q Consensus 213 ~G~~~V~f--~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G 290 (620)
.|.. |+. +..+..+++++|+.++++++.++|+++|+||||+|.++|.+++++|+.+++.++ ++|++|||||.|
T Consensus 135 ~G~~-v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~G 209 (592)
T PRK09282 135 AGAH-VQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD----LPVQLHSHCTSG 209 (592)
T ss_pred cCCE-EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCC
Confidence 9975 542 333345789999999999999999999999999999999999999999999884 689999999999
Q ss_pred hHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCc
Q 007056 291 LSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKA 370 (620)
Q Consensus 291 lAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~p 370 (620)
||+||+++|+++||++||+|++|||||+||++||+++.+|+.. |+++++|++.|.+++++++++.
T Consensus 210 la~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~~~------g~~~~idl~~l~~~s~~~~~~~--------- 274 (592)
T PRK09282 210 LAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALKGT------PYDTGLDLELLFEIAEYFREVR--------- 274 (592)
T ss_pred cHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHHhC------CCCCccCHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999863 6789999999999999999987
Q ss_pred ccCccceeeeccccccccccCCccccccCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007056 371 IVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFK 448 (620)
Q Consensus 371 ivG~naF~h~sGiH~dgi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~vk 448 (620)
..|++++|+..|..+ ++.....+|. +++...|+++|+ .+.+.+++++++
T Consensus 275 ----------------------~~y~~~~~~~~~~~~----~v~~~~~pGg~~snl~~q~~~~g~---~d~~~~vl~e~~ 325 (592)
T PRK09282 275 ----------------------KKYKQFESEFTIVDT----RVLIHQVPGGMISNLVSQLKEQNA---LDKLDEVLEEIP 325 (592)
T ss_pred ----------------------HHhhcCCCccccCCc----cEEEEcCCCcHHHHHHHHHHHCCc---HHHHHHHHHHHH
Confidence 469999999999876 4999999999 999999999998 347888888888
Q ss_pred HHH
Q 007056 449 AVA 451 (620)
Q Consensus 449 ~~a 451 (620)
+.-
T Consensus 326 ~v~ 328 (592)
T PRK09282 326 RVR 328 (592)
T ss_pred HHH
Confidence 753
No 37
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.4e-48 Score=426.38 Aligned_cols=278 Identities=19% Similarity=0.253 Sum_probs=237.9
Q ss_pred CceEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhcccccccC
Q 007056 75 NYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 145 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~g-~~fs~~~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 145 (620)
++|.|+|||||||+|+++ ..|++++|+.|++.|+++||+.||+| |+. .++++||.++.+++.+++.
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt----- 77 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNS----- 77 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-----
Confidence 469999999999999998 89999999999999999999999998 665 5678899999999987653
Q ss_pred CccceEEeecc-------------cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 007056 146 GYVPVICGLSR-------------CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS 212 (620)
Q Consensus 146 ~l~~~i~~~~r-------------~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~ 212 (620)
.++.|+| ..+.+|+.+++ +|++.+++|.+.||+ +.+..+++.+++
T Consensus 78 ----~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~----~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ 135 (499)
T PRK12330 78 ----RLQMLLRGQNLLGYRHYEDEVVDRFVEKSAE----NGMDVFRVFDALNDP--------------RNLEHAMKAVKK 135 (499)
T ss_pred ----eEEEEEcccccCCccCcchhHHHHHHHHHHH----cCCCEEEEEecCChH--------------HHHHHHHHHHHH
Confidence 5777777 23556666655 499999999999986 233445555566
Q ss_pred cCCC---EEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCc
Q 007056 213 LGCD---DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 289 (620)
Q Consensus 213 ~G~~---~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~ 289 (620)
.|.. .++|.. ...++++|+.++++.+.++||++|+|+||+|.++|.+++++|+.+++.+|+ +++|++|||||+
T Consensus 136 ag~~~~~~i~yt~--sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~--~ipI~~H~Hnt~ 211 (499)
T PRK12330 136 VGKHAQGTICYTV--SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGE--DTRINLHCHSTT 211 (499)
T ss_pred hCCeEEEEEEEec--CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCC--CCeEEEEeCCCC
Confidence 6542 356621 236799999999999999999999999999999999999999999999963 488999999999
Q ss_pred chHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHh--------
Q 007056 290 GLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYT-------- 361 (620)
Q Consensus 290 GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~-------- 361 (620)
|||+||+++|+++||++||+|++|||+|+||++||+++++|+. .|+++++|+++|.+++++++++.
T Consensus 212 GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~------~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~ 285 (499)
T PRK12330 212 GVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEG------TGYTTKLDMDRLLKIRDHFKKVRPKYKEFES 285 (499)
T ss_pred CcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999996 37889999999999988877652
Q ss_pred ---CCCCCCCCc-ccCccceeeeccccccccc
Q 007056 362 ---GLHVQPHKA-IVGANAFAHESGIHQDGML 389 (620)
Q Consensus 362 ---g~~v~~~~p-ivG~naF~h~sGiH~dgi~ 389 (620)
+......++ +.|.+.|.|++++|+.|..
T Consensus 286 ~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~ 317 (499)
T PRK12330 286 KTTGVETEIFKSQIPGGMLSNMESQLKQQGAG 317 (499)
T ss_pred cccCCCCccccCCCCCCchhhHHHHHHHcChh
Confidence 344555666 9999999999999999854
No 38
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.1e-47 Score=417.35 Aligned_cols=260 Identities=22% Similarity=0.278 Sum_probs=222.6
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhcccccccC
Q 007056 75 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 145 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 145 (620)
++|.|+|||||||+|++ +..|++++|++|++.|+++||+.||++ |+. .++++|+.++.+.+.+++......
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l 81 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQML 81 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 46999999999999998 679999999999999999999999997 554 477899999999887554321111
Q ss_pred CccceEEeeccc----chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEE
Q 007056 146 GYVPVICGLSRC----NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEF 220 (620)
Q Consensus 146 ~l~~~i~~~~r~----~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f 220 (620)
.+.+++.+|.+. .+++|+++++ +|++.|++|.+.||.| ++.++++++|++|... +.+
T Consensus 82 ~r~~N~~G~~~~pddvv~~~v~~A~~----~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 82 LRGQNLLGYRNYADDVVESFVQKSVE----NGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred eccccccccccCchhhHHHHHHHHHH----CCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEE
Confidence 123445566553 3455666655 4999999999999975 2556899999999741 335
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHH
Q 007056 221 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 300 (620)
Q Consensus 221 ~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 300 (620)
+.++..+++++|+.++++.+.++|+++|+|+||+|+++|.+++++|+.+++.++ ++|++|||||+|||+||+++|+
T Consensus 144 ~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~----~pi~~H~Hnt~GlA~AN~laAi 219 (448)
T PRK12331 144 SYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT----VPLEVHTHATSGIAEMTYLKAI 219 (448)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCCcHHHHHHHHH
Confidence 666778999999999999999999999999999999999999999999999884 7899999999999999999999
Q ss_pred HhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhC
Q 007056 301 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 362 (620)
Q Consensus 301 ~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 362 (620)
++||++||+|++|||+|+||++||+++++|+. .|+++++|++.|.+++++++++..
T Consensus 220 eaGad~vD~sv~glg~gaGN~~tE~lv~~L~~------~g~~tgidl~~L~~~~~~~~~~r~ 275 (448)
T PRK12331 220 EAGADIIDTAISPFAGGTSQPATESMVAALQD------LGYDTGLDLEELSEIAEYFNPIRD 275 (448)
T ss_pred HcCCCEEEeeccccCCCcCCHhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 378899999999999999988654
No 39
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=7.5e-46 Score=405.73 Aligned_cols=253 Identities=21% Similarity=0.262 Sum_probs=217.4
Q ss_pred ceEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEecCC--------CChhHHHHHHHHHHHhcccccccCC
Q 007056 76 YVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAESG 146 (620)
Q Consensus 76 ~V~I~DtTLRDG~Qs~g-~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~--------~s~~d~e~v~~i~~~~~~~~~~~~~ 146 (620)
+|.|+|||||||+|+++ ..|++++|++|++.|+++||+.||+|.++ .++++||.++.+.+.+++.
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~------ 75 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNT------ 75 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCC------
Confidence 48999999999999994 79999999999999999999999996332 3677899999998865442
Q ss_pred ccceEEeeccc--------chhh-HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE
Q 007056 147 YVPVICGLSRC--------NERD-IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD 217 (620)
Q Consensus 147 l~~~i~~~~r~--------~~~d-I~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~ 217 (620)
.+++|+|. .++| ++..++....+|++.|++|.+.||+ +++..+++++|++|..
T Consensus 76 ---~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~- 137 (467)
T PRK14041 76 ---KIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAH- 137 (467)
T ss_pred ---EEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCE-
Confidence 45555554 4566 3344444445699999999999983 4567888999999975
Q ss_pred EEE--cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHH
Q 007056 218 VEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 295 (620)
Q Consensus 218 V~f--~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 295 (620)
|+. +.....+++++|+.++++.+.++||++|+|+||+|+++|.+++++|+.++++++ ++|++|||||+|||+||
T Consensus 138 v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~----vpI~~H~Hnt~GlA~AN 213 (467)
T PRK14041 138 VQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG----VPVEVHSHCTTGLASLA 213 (467)
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC----CceEEEecCCCCcHHHH
Confidence 542 222234789999999999999999999999999999999999999999999984 68999999999999999
Q ss_pred HHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhC
Q 007056 296 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 362 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 362 (620)
+++|+++||++||+|++|+|+|+||++||+++++|+. .|+++++|++.|.+++++++++..
T Consensus 214 ~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~------~g~~tgiDl~~L~~~~~~~~~vr~ 274 (467)
T PRK14041 214 YLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRE------NGKETDFDRKALKFLVEYFTKVRE 274 (467)
T ss_pred HHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986 378899999999999999998754
No 40
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1e-41 Score=371.09 Aligned_cols=255 Identities=20% Similarity=0.294 Sum_probs=218.0
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEe----cCC----CChhHHHHHHHHHHHhcccccccC
Q 007056 75 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 145 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gvd~IEvG----fP~----~s~~d~e~v~~i~~~~~~~~~~~~ 145 (620)
++|.|+|||||||.|++ ...|++++.+.|++.|+++|++.||++ |.. ..+.+||.++.+++.++|+
T Consensus 11 ~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt----- 85 (468)
T PRK12581 11 QQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNT----- 85 (468)
T ss_pred CceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-----
Confidence 56999999999999996 557999999999999999999999995 321 3456899999999988764
Q ss_pred CccceEEeeccc---------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 007056 146 GYVPVICGLSRC---------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 216 (620)
Q Consensus 146 ~l~~~i~~~~r~---------~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~ 216 (620)
.++.+.|. ..+-++..++.....|++.+.+|.+..| ++.+..+++.+|+.|..
T Consensus 86 ----~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~G~~ 147 (468)
T PRK12581 86 ----RLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKTGKE 147 (468)
T ss_pred ----ceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHcCCE
Confidence 34555554 2233555666666779999999998765 45677889999999975
Q ss_pred EEEE--cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHH
Q 007056 217 DVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 294 (620)
Q Consensus 217 ~V~f--~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA 294 (620)
+++ +.++...++.+|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++. + +++|++|||||+|||+|
T Consensus 148 -~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~---~~pi~~H~Hnt~GlA~A 222 (468)
T PRK12581 148 -AQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-T---NLPLIVHTHATSGISQM 222 (468)
T ss_pred -EEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-c---CCeEEEEeCCCCccHHH
Confidence 322 3334457899999999999999999999999999999999999999999984 3 47899999999999999
Q ss_pred HHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCC
Q 007056 295 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 363 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~ 363 (620)
|+++|+++||++||+|++|+|+|+||++||+++++|+. .|+++++|++.|.+++++++++...
T Consensus 223 n~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~------~g~~tgiDl~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 223 TYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKE------AGYDITLDETLLEQAANHLRQARQK 285 (468)
T ss_pred HHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 3788999999999999999987654
No 41
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=3.3e-42 Score=412.10 Aligned_cols=278 Identities=22% Similarity=0.254 Sum_probs=231.0
Q ss_pred CCCCCCceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHc--CCCEEEEec--------CCCChhHHHHHHHHHHHhc
Q 007056 70 RIPDPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKL--GVDIIEAGF--------PAASKEDFEAVRTIAKEVG 138 (620)
Q Consensus 70 ~~~~~~~V~I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~--Gvd~IEvGf--------P~~s~~d~e~v~~i~~~~~ 138 (620)
|+-+.++|.|+|||||||+|++ +..|++++|+.|++.|+++ |++.||+|+ +..++++|+.++.+++.++
T Consensus 526 ~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~ 605 (1146)
T PRK12999 526 WLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAP 605 (1146)
T ss_pred HHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCC
Confidence 4445678999999999999998 6999999999999999999 999999997 5567788999999999876
Q ss_pred ccccccCCccceEEeeccc---------chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 007056 139 NAVDAESGYVPVICGLSRC---------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKF 209 (620)
Q Consensus 139 ~~~~~~~~l~~~i~~~~r~---------~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~ 209 (620)
+. .++.|+|+ ...-++..++....+|++.+++|.+.+++ +.+..+++.
T Consensus 606 ~~---------~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~--------------~~~~~~i~~ 662 (1146)
T PRK12999 606 NV---------LFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWV--------------ENMRVAIDA 662 (1146)
T ss_pred CC---------eEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChH--------------HHHHHHHHH
Confidence 64 35555554 22223333344444599999999998863 346677788
Q ss_pred HHHcCCC-EEEEcCC----CCCC--CCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEE
Q 007056 210 ARSLGCD-DVEFSPE----DAGR--SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIS 282 (620)
Q Consensus 210 a~~~G~~-~V~f~~e----d~~r--~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~ 282 (620)
+++.|.. .+.++.+ |.+| ++++|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++ +++|+
T Consensus 663 vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~----~ipi~ 738 (1146)
T PRK12999 663 VRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV----DLPIH 738 (1146)
T ss_pred HHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc----CCeEE
Confidence 8888842 2555555 7777 6999999999999999999999999999999999999999999988 37899
Q ss_pred EecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhC
Q 007056 283 THCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 362 (620)
Q Consensus 283 ~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g 362 (620)
+|||||+|||+||+++|+++||++||+|++|||+|+||++||+++++|+. .|+++++|++.|.+++++++++..
T Consensus 739 ~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~------~~~~t~idl~~l~~~s~~~~~~r~ 812 (1146)
T PRK12999 739 LHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEG------TERDTGLDLDAIRKLSPYWEAVRP 812 (1146)
T ss_pred EEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHh------cCCCCCcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999995 367899999999999999999876
Q ss_pred CCCCCCCcccC--ccceeee
Q 007056 363 LHVQPHKAIVG--ANAFAHE 380 (620)
Q Consensus 363 ~~v~~~~pivG--~naF~h~ 380 (620)
.--+......+ .+++.|+
T Consensus 813 ~y~~~~~~~~~~~~~v~~~~ 832 (1146)
T PRK12999 813 YYAPFESGLKSPTTEVYLHE 832 (1146)
T ss_pred HhhccCCCCCCCCcCeEEec
Confidence 53222222233 3477776
No 42
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=1.1e-39 Score=365.49 Aligned_cols=280 Identities=14% Similarity=0.169 Sum_probs=234.6
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCC--------CChhHHHHHHHHHHHhcccccccC
Q 007056 75 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAES 145 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~--------~s~~d~e~v~~i~~~~~~~~~~~~ 145 (620)
++|.|.|||||||.||. ...|++++-+.|++.|+++|+..||++..+ ..+.+|+.++.+++.++|......
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL 81 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSML 81 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEE
Confidence 57999999999999976 669999999999999999999999997432 234679999999998877643321
Q ss_pred CccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE---EEEcC
Q 007056 146 GYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD---VEFSP 222 (620)
Q Consensus 146 ~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~---V~f~~ 222 (620)
-...++.|+.....+-++..++.....|++.+++|.+..| ++.+..+++.+|+.|... ++|.
T Consensus 82 ~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~~G~~~~~~i~yt- 146 (596)
T PRK14042 82 LRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKSHKKHAQGAICYT- 146 (596)
T ss_pred eccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHHcCCEEEEEEEec-
Confidence 1124566777776666777777767789999999999876 445667899999999752 3342
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh
Q 007056 223 EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 302 (620)
Q Consensus 223 ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 302 (620)
....++++|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+++
T Consensus 147 -~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~----ipi~~H~Hnt~Gla~an~laAiea 221 (596)
T PRK14042 147 -TSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG----LPVHLHSHSTSGLASICHYEAVLA 221 (596)
T ss_pred -CCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC----CEEEEEeCCCCCcHHHHHHHHHHh
Confidence 344789999999999999999999999999999999999999999999873 789999999999999999999999
Q ss_pred cCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCC--CCCCCCcccCccceeee
Q 007056 303 GARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL--HVQPHKAIVGANAFAHE 380 (620)
Q Consensus 303 GA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~--~v~~~~pivG~naF~h~ 380 (620)
||++||+|++|||+|+||++||+++++|+. .|+++++|+++|.+++++++++... +..+...-+-.+++.|+
T Consensus 222 Gad~iD~ai~glGg~tGn~~tE~lv~~L~~------~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~hq 295 (596)
T PRK14042 222 GCNHIDTAISSFSGGASHPPTEALVAALTD------TPYDTELDLNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQLYQ 295 (596)
T ss_pred CCCEEEeccccccCCCCcHhHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCccccCCcceeecC
Confidence 999999999999999999999999999996 3688999999999999999997543 23333334456677776
No 43
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=3.4e-34 Score=341.99 Aligned_cols=287 Identities=21% Similarity=0.211 Sum_probs=238.3
Q ss_pred CCCCCCceEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHhHc--CCCEEEEecCCC--------ChhHHHHHHHHHHHhc
Q 007056 70 RIPDPNYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKL--GVDIIEAGFPAA--------SKEDFEAVRTIAKEVG 138 (620)
Q Consensus 70 ~~~~~~~V~I~DtTLRDG~Qs~g-~~fs~~~Kl~Ia~~L~~~--Gvd~IEvGfP~~--------s~~d~e~v~~i~~~~~ 138 (620)
|+-+.++|.|.|||||||.||.. .+|.+++-+.|+..++++ |+..+|+.-.+. .+.-|+.++.+.+.++
T Consensus 524 ~~~~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~p 603 (1143)
T TIGR01235 524 WVRNQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVP 603 (1143)
T ss_pred HHHhcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCC
Confidence 44455789999999999999995 599999999999999995 999999943221 2344999999999888
Q ss_pred ccccccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC--
Q 007056 139 NAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-- 216 (620)
Q Consensus 139 ~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~-- 216 (620)
|......-...++.|+.....+-++..++.....|++.+.+|.+..+ ++++..+++.+|+.|..
T Consensus 604 n~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~~~~g~~~~ 669 (1143)
T TIGR01235 604 NILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAVAEAGKVVE 669 (1143)
T ss_pred CCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHHHHcCCEEE
Confidence 86554322235677887777777888888777889999999999876 45677888999999974
Q ss_pred -EEEEc--CCCCC--CCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcch
Q 007056 217 -DVEFS--PEDAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL 291 (620)
Q Consensus 217 -~V~f~--~ed~~--r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl 291 (620)
.++|. ..|.. .++++|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++ +++|++|||||+||
T Consensus 670 ~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~----~~pi~~H~Hdt~Gl 745 (1143)
T TIGR01235 670 AAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT----DLPIHFHTHDTSGI 745 (1143)
T ss_pred EEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc----CCeEEEEECCCCCc
Confidence 24553 22333 46899999999999999999999999999999999999999999988 37899999999999
Q ss_pred HHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCC--CCCCC
Q 007056 292 STANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLH--VQPHK 369 (620)
Q Consensus 292 AvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~--v~~~~ 369 (620)
|+||+++|+++||++||+|++|||++++++++|+++++|+.. |+++++|+++|.+++++++++...- .....
T Consensus 746 a~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~------~~~tgidl~~l~~is~~~~~vr~~y~~~~~~~ 819 (1143)
T TIGR01235 746 AVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGS------ERDPGLNVAWIRELSAYWEAVRNLYAAFESDL 819 (1143)
T ss_pred HHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhC------CCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999863 6789999999999999999975532 33333
Q ss_pred cccCccceeee
Q 007056 370 AIVGANAFAHE 380 (620)
Q Consensus 370 pivG~naF~h~ 380 (620)
.-.-..++.|+
T Consensus 820 ~~~~~~v~~~~ 830 (1143)
T TIGR01235 820 KGPASEVYLHE 830 (1143)
T ss_pred cCCCcCeEEec
Confidence 33344677776
No 44
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=272.34 Aligned_cols=271 Identities=20% Similarity=0.324 Sum_probs=235.7
Q ss_pred CCCceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH---HHHHHHHHHHhcccccccCC
Q 007056 73 DPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED---FEAVRTIAKEVGNAVDAESG 146 (620)
Q Consensus 73 ~~~~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d---~e~v~~i~~~~~~~~~~~~~ 146 (620)
-|++++|+++..|||.|......+++.|++++++|.++|+..||..+ |...|+. .|.++.+.+..+.. ...
T Consensus 15 ~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~~Gv~---yPV 91 (316)
T KOG2368|consen 15 APKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKFPGVS---YPV 91 (316)
T ss_pred ccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhcCCCcc---ccc
Confidence 35669999999999999999999999999999999999999999985 5555652 34555555432221 112
Q ss_pred ccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---EE--EEc
Q 007056 147 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DV--EFS 221 (620)
Q Consensus 147 l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~---~V--~f~ 221 (620)
|.| +.++.+.|+.+ |+..|.+|.+.||.+...++|++.||.+.+..+.++.|+++++. +| ..+
T Consensus 92 LtP--------NlkGf~~Avaa----Ga~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvG 159 (316)
T KOG2368|consen 92 LTP--------NLKGFEAAVAA----GAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVG 159 (316)
T ss_pred cCc--------chhhHHHHHhc----CceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEec
Confidence 233 55667777765 89999999999999999999999999999999999999999875 23 346
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHH
Q 007056 222 PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 301 (620)
Q Consensus 222 ~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 301 (620)
|...+...|+.+.++.+++.+.|+..|.|.||.|..+|-.+.++...+.+.+|. -.+.+||||++|.|+||.|.+++
T Consensus 160 CPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa---~~LAVH~HDTYGQALaNiL~slq 236 (316)
T KOG2368|consen 160 CPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPA---EKLAVHCHDTYGQALANILVSLQ 236 (316)
T ss_pred CCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCH---HHhhhhhhhhHHHHHHHHHHHHH
Confidence 668889999999999999999999999999999999999999999999999985 45999999999999999999999
Q ss_pred hcCcEEeeccccccC------CcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCC
Q 007056 302 AGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQP 367 (620)
Q Consensus 302 aGA~~Vd~Ti~GlGE------RaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~ 367 (620)
-|.+.||.++.|+|+ .+||+++|++++.|+- .|++|++|+.+|.+..+++.+..|++-..
T Consensus 237 mGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvYmL~G------lG~~TgVnL~Klieag~fi~~algr~~~S 302 (316)
T KOG2368|consen 237 MGIRVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNG------LGLHTGVNLDKLIEAGDFICKALGRTTWS 302 (316)
T ss_pred hcceehhhhccccCCCCccccCCCCchHHHHHHHHhc------CCcccCcCHHHHHHHHHHHHHHhCCCchh
Confidence 999999999999997 7899999999999985 48999999999999999999999986544
No 45
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.7e-31 Score=278.33 Aligned_cols=318 Identities=22% Similarity=0.331 Sum_probs=254.7
Q ss_pred CceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCCC---------ChhHHHHHHHHHHHhccccccc
Q 007056 75 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPAA---------SKEDFEAVRTIAKEVGNAVDAE 144 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~---------s~~d~e~v~~i~~~~~~~~~~~ 144 (620)
++|.|.||+||||.||. ..+|.+++.+.|++.||++|+...|+. -++ +++-|+.+|.+.+.++|+....
T Consensus 4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~W-GGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQM 82 (472)
T COG5016 4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVW-GGATFDACIRFLNEDPWERLRELKKAVPNTKLQM 82 (472)
T ss_pred ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEec-CCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHH
Confidence 56999999999999998 669999999999999999999999994 333 3456999999999887753321
Q ss_pred CCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---EEEE-
Q 007056 145 SGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DVEF- 220 (620)
Q Consensus 145 ~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~---~V~f- 220 (620)
.-...++.|+-....+-++..++.....|++.+++|.+.+|.. ++..+++.+|++|.. .++|
T Consensus 83 LlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~R--------------Nl~~ai~a~kk~G~h~q~~i~YT 148 (472)
T COG5016 83 LLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVR--------------NLKTAIKAAKKHGAHVQGTISYT 148 (472)
T ss_pred HHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchh--------------HHHHHHHHHHhcCceeEEEEEec
Confidence 1112456666444455566666666667999999999998844 456788888999874 2345
Q ss_pred -cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH
Q 007056 221 -SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 299 (620)
Q Consensus 221 -~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 299 (620)
+| -++.+++.++++++.++|+|.|+|.|..|.++|.+.+++|+.+++.++ ++|.+|||.+.|||.++.++|
T Consensus 149 ~sP----vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~----~pv~lHtH~TsG~a~m~ylkA 220 (472)
T COG5016 149 TSP----VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP----VPVELHTHATSGMAEMTYLKA 220 (472)
T ss_pred cCC----cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC----CeeEEecccccchHHHHHHHH
Confidence 44 578999999999999999999999999999999999999999999985 889999999999999999999
Q ss_pred HHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceee
Q 007056 300 ACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAH 379 (620)
Q Consensus 300 v~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h 379 (620)
++||||.||+++..+..+++.+++|.++.+|+.. ++++|+|++.|..+++++.++-.
T Consensus 221 vEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt------~yDtgld~~~l~~~~~yf~~vrk----------------- 277 (472)
T COG5016 221 VEAGVDGIDTAISPLSGGTSQPATETMVAALRGT------GYDTGLDLELLEEIAEYFREVRK----------------- 277 (472)
T ss_pred HHhCcchhhhhhccccCCCCCCcHHHHHHHhcCC------CCCccccHHHHHHHHHHHHHHHH-----------------
Confidence 9999999999999999999999999999999863 67899999999999998886532
Q ss_pred eccccccccccCCccc-cccCCcccCCcccccceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hcC
Q 007056 380 ESGIHQDGMLKHKGTY-EIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKELGYELNDEQLGTIFWHFKAVAE-QKK 455 (620)
Q Consensus 380 ~sGiH~dgi~k~~~~Y-e~i~Pe~vG~~r~~~~~i~lg~~SG~--~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~-~~~ 455 (620)
-| -.++|+..|-. .+|++...-|- +++..-|++.|. .+.++++++++.+.-+ -++
T Consensus 278 --------------kY~~~~~~~~~~~d----~~ili~qvPGGMlSNl~sQLkeqna---ldK~~eVLeEvprVredlGy 336 (472)
T COG5016 278 --------------KYKGLLEPQAKGVD----PRILIYQVPGGMLSNLESQLKEQNA---LDKLEEVLEEVPRVREDLGY 336 (472)
T ss_pred --------------HHhhccCccccCCC----CcceEeeCChHHHHHHHHHHHHcch---hhHHHHHHHHhHHHHhhcCC
Confidence 24 23466666632 35888888884 355566666554 3567788888887653 344
Q ss_pred c--CCH
Q 007056 456 R--VTD 459 (620)
Q Consensus 456 ~--v~~ 459 (620)
. +|+
T Consensus 337 pPLVTP 342 (472)
T COG5016 337 PPLVTP 342 (472)
T ss_pred CCccCc
Confidence 3 554
No 46
>PF08502 LeuA_dimer: LeuA allosteric (dimerisation) domain; InterPro: IPR013709 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate synthase, which catalyses the first committed step in the leucine biosynthetic pathway []. This domain, is an internally duplicated structure with a novel fold []. It comprises two similar units that are arranged such that the two -helices pack together in the centre, crossing at an angle of 34 degrees, sandwiched between the two three-stranded, antiparallel beta-sheets. The overall domain is thus constructed as a beta-alpha-beta three-layer sandwich []. ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process; PDB: 3HQ1_A 3HPZ_B 1SR9_A 3FIG_B 3HPS_A 3F6G_A 3F6H_A.
Probab=99.97 E-value=2.2e-29 Score=233.92 Aligned_cols=133 Identities=41% Similarity=0.581 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHhcCCcceEEEeeEEEEeccCCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhhcCCceeee
Q 007056 456 RVTDADLIALVSDEIFQPEVVWKLLDMQVTCGTLGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIVKEPATLLE 535 (620)
Q Consensus 456 ~v~~~el~~L~~~~~~~~~~~~~L~~~~v~~g~~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~~~~~~L~d 535 (620)
+|+++||+.||.+.|...+++|+|.+|++.++..+.++++|++...+|++++..++|||||||+++||+++++.+++|.|
T Consensus 1 Ev~~~~i~~lf~~~y~~~~~~~~l~~~~v~~~~~~~~~a~v~l~~~~g~~~~~~~~GnGpv~A~~~Al~~~~g~~i~l~d 80 (133)
T PF08502_consen 1 EVTDEDIWALFEEEYLEVEEPYRLKSFQVSSGSGGRPTATVTLEVTDGEEHTISGTGNGPVDAFFNALNKALGIDIELID 80 (133)
T ss_dssp ---HHHHHHHHHHHHTS--SSEEEEEEEEEEETTCCEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHCHCCCEEEEEE
T ss_pred CcCHHHHHHHHHHHhCcCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCeEEEEEEECCChHHHHHHHHHHHcCCceEEEE
Confidence 47899999999999998889999999999999888899999998339999999999999999999999999999999999
Q ss_pred eeeeecCCCCCceEEEEEEEEeccCCcccccCCCcccCceEEEEeecccHHHHHHHHHHHHHHhhh
Q 007056 536 YSMNAVTAGIDAIATTRVLIRGEKSQLSTHASTGETVQRTFSGTGAGMDIVVSSVKAYIGALNKML 601 (620)
Q Consensus 536 Y~v~av~~G~dA~a~~~V~i~~~~~~~~~~~~~g~~~~~~~~g~G~~~DIi~AS~~A~i~A~N~l~ 601 (620)
|++|++++|+||+|+++|+|+.. +|+.|||+|+|+||+.||++||++|+||+|
T Consensus 81 y~~~al~~gsda~a~a~V~i~~~-------------~g~~~~G~g~~~Di~~As~~A~~~AiNr~l 133 (133)
T PF08502_consen 81 YSEHALGSGSDAQAEAYVEIEDE-------------DGRTVWGVGIDTDIVEASLKAYLSAINRLL 133 (133)
T ss_dssp EEEEESTTSTT-EEEEEEEEEE--------------GGGEEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEeccCCCCcEEEEEEEEEEC-------------CCcEEEEEEECCCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999953 368899999999999999999999999986
No 47
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.86 E-value=2.4e-20 Score=206.88 Aligned_cols=270 Identities=21% Similarity=0.237 Sum_probs=211.9
Q ss_pred CCCCCCCceEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHhHcCC--CEEEEecCCC---------ChhHHHHHHHHHHH
Q 007056 69 NRIPDPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGV--DIIEAGFPAA---------SKEDFEAVRTIAKE 136 (620)
Q Consensus 69 ~~~~~~~~V~I~DtTLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gv--d~IEvGfP~~---------s~~d~e~v~~i~~~ 136 (620)
+|+.+.+.+-+.|||+||+.||. ..++.+-+...||....++=- -..|+ |-++ .++.|+.++.+.+.
T Consensus 528 ~wvr~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~-WGGATfDVamRFL~EdPWeRL~~lRk~ 606 (1149)
T COG1038 528 RWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEM-WGGATFDVAMRFLKEDPWERLERLRKA 606 (1149)
T ss_pred HHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhh-hCCchHHHHHHHhccCHHHHHHHHHHh
Confidence 35556688999999999999998 457888888999998887533 34455 4333 23458999999988
Q ss_pred hcccccccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 007056 137 VGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 216 (620)
Q Consensus 137 ~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~ 216 (620)
++|-+.+..-...+-.|+.....+-|+..++--...|++.+++|.+.+. ++.++-++...++.|.-
T Consensus 607 ~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV~e~gkv 672 (1149)
T COG1038 607 VPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAVREAGKV 672 (1149)
T ss_pred CCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHHHhcCCe
Confidence 7775433211123445666666666666655555679999999988643 33444555555666632
Q ss_pred ---EEEEcCC--CCC--CCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCc
Q 007056 217 ---DVEFSPE--DAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 289 (620)
Q Consensus 217 ---~V~f~~e--d~~--r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~ 289 (620)
.+||+.. |-. .++.+|+..+++.+.++|+.++.+.|..|.+.|...+.||+.||+.+ ++||.+|.|++.
T Consensus 673 ~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~----dlPIHlHTHDTs 748 (1149)
T COG1038 673 AEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV----DLPIHLHTHDTS 748 (1149)
T ss_pred EEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc----CCceEEeccCCC
Confidence 3577432 333 45899999999999999999999999999999999999999999988 488999999999
Q ss_pred chHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCC
Q 007056 290 GLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 363 (620)
Q Consensus 290 GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~ 363 (620)
|.++|..++|++||+|.||+++.-|.+-+..+++-.++.+|... ..++++|.+.+.+++.|++..-+.
T Consensus 749 G~~~at~~aA~~AGvDivD~A~~smsG~TSQPsl~si~~al~~~------~r~~~ld~~~~~~i~~YWe~vR~~ 816 (1149)
T COG1038 749 GNGVATYLAAVEAGVDIVDVAMASMSGLTSQPSLNSIVAALAGT------ERDTGLDIEAVRELSFYWEAVRKL 816 (1149)
T ss_pred ccHHHHHHHHHHcCCchhhhhhhhccCCCCCccHHHHHHHhcCC------CCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999852 246899999999999999987654
No 48
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.74 E-value=3.9e-17 Score=178.35 Aligned_cols=265 Identities=22% Similarity=0.252 Sum_probs=204.4
Q ss_pred CceEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHhH--cCCCEEEEecCCCC---------hhHHHHHHHHHHHhccccc
Q 007056 75 NYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAK--LGVDIIEAGFPAAS---------KEDFEAVRTIAKEVGNAVD 142 (620)
Q Consensus 75 ~~V~I~DtTLRDG~Qs~g-~~fs~~~Kl~Ia~~L~~--~Gvd~IEvGfP~~s---------~~d~e~v~~i~~~~~~~~~ 142 (620)
....|+|||+||..|+.- ....+-+-..|+..... .|.-..|. |-++. +-.|+.++++.+.++|-..
T Consensus 558 ~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~-WGGATFDVamRFLhEcPWeRL~~lRkliPNIPF 636 (1176)
T KOG0369|consen 558 PGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLEN-WGGATFDVAMRFLHECPWERLRELRKLIPNIPF 636 (1176)
T ss_pred CCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhh-cCCchhhHHHHHHhcChHHHHHHHHHhCCCCcH
Confidence 346799999999999983 35566666667666543 35555565 43332 2348999999998777433
Q ss_pred ccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---EEE
Q 007056 143 AESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DVE 219 (620)
Q Consensus 143 ~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~---~V~ 219 (620)
...-..++-.+++....+-|....+..+..|.+.+.+|.+..++ .++.=.++.++..|-- .++
T Consensus 637 QmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~l--------------pnl~lGmeAagkAGGVVEAai~ 702 (1176)
T KOG0369|consen 637 QMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYL--------------PNLLLGMEAAGKAGGVVEAAIC 702 (1176)
T ss_pred HHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhhh--------------hhhhhhHhhhhccCCeEEEEEe
Confidence 22111234456666666667776666677899999999887653 3333445556666642 356
Q ss_pred EcCC--CCC--CCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHH
Q 007056 220 FSPE--DAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 295 (620)
Q Consensus 220 f~~e--d~~--r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 295 (620)
|+.. |-+ +++.+|+..+++.+.++|..+++|.|..|.+.|+...-||..+|.++|+ +||.+|.|++.|.|+|.
T Consensus 703 YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~Pd---lPiHvHtHDtsGagVAs 779 (1176)
T KOG0369|consen 703 YTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPD---LPIHVHTHDTSGAGVAS 779 (1176)
T ss_pred eccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCC---CceEEeccCCccHHHHH
Confidence 6432 434 4789999999999999999999999999999999999999999999995 78999999999999999
Q ss_pred HHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCC
Q 007056 296 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 363 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~ 363 (620)
.+++.+|||+.||+++.-|.+=+..+++-.+++.|.-. -++|+++++.+.+.+.|+++.-..
T Consensus 780 Mlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt------~~Dt~l~~~~v~eysaYWe~~R~L 841 (1176)
T KOG0369|consen 780 MLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGT------PLDTGLNLEHVREYSAYWEQMRLL 841 (1176)
T ss_pred HHHHHHcCCceeeeecccccccccCCchhhhhhhccCC------cccCCCchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999988877631 278999999999999999987654
No 49
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=99.74 E-value=3.5e-25 Score=235.88 Aligned_cols=264 Identities=13% Similarity=-0.009 Sum_probs=191.7
Q ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHH
Q 007056 182 ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTE 261 (620)
Q Consensus 182 ~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~ 261 (620)
++++.|++.+..++..+.+.+..++++++++.+.. +.+.+||+.+.++++...+..+....+++.+.+|||+|.+.|++
T Consensus 77 ~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~ 155 (344)
T TIGR02146 77 VAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILES-ARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFGVDR 155 (344)
T ss_pred HHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHH-HHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCE
Confidence 44555555555566666677777777777777643 66667777776666666666655555667777777777777776
Q ss_pred HHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCcc
Q 007056 262 FGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGL 341 (620)
Q Consensus 262 v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~ 341 (620)
+.-....... .|. ++...+|+|||+|++++|++.+...|+..+..|++|+|+|+||++++ +..|..+ .|.
T Consensus 156 i~~~dt~g~~-~p~--~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s--~~glG~~-----~G~ 225 (344)
T TIGR02146 156 VGIADTVGKA-APR--QVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTT--VLGIGER-----NGI 225 (344)
T ss_pred EEEcCCCCcC-CHH--HHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEE--eeeeeCC-----CCC
Confidence 5443333322 221 46688999999999999999999999999999999999999999996 3334332 132
Q ss_pred -ccCCChhhHHHHHHHHHHHhCCCCCCCCcccCccceeeeccccccccccCCccccccCCcccCCcccccceEeeecccc
Q 007056 342 -YTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSG 420 (620)
Q Consensus 342 -~t~idl~~L~~~s~~v~~~~g~~v~~~~pivG~naF~h~sGiH~dgi~k~~~~Ye~i~Pe~vG~~r~~~~~i~lg~~SG 420 (620)
.+.+++..|..++.++...++..++.++|++|.+.|.|++|+|++|+.+++.+|++++|+.+|+.+. +.++++||
T Consensus 226 ~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~----y~~~~~s~ 301 (344)
T TIGR02146 226 TPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRT----YEFLPPEV 301 (344)
T ss_pred ccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCccc----CCCCCHHH
Confidence 2345666677666666555677788999999999999999999999999999999999999998874 88999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q 007056 421 RHALKDRLKELGYELNDEQLGTIFWHFKAVAEQKKRVTDADLIALVSD 468 (620)
Q Consensus 421 ~~~i~~~l~~lG~~l~~~~~~~~~~~vk~~a~~~~~v~~~el~~L~~~ 468 (620)
.+++++++...|.. ...+.. .++ ..+-.++++++..++..
T Consensus 302 ~g~~~~~~~~~~~g--~~~~~~---~~~---~~~~~~~~~~~~~~~~~ 341 (344)
T TIGR02146 302 FGRKRHILIARLTG--KHAIKA---RKE---KLGVKLIEEELKRVTAK 341 (344)
T ss_pred cCCcceEeeecccc--HHHHHH---HHH---HcCCCCCHHHHHHHHHH
Confidence 99988877665532 222221 122 22445788888877654
No 50
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.41 E-value=7.8e-06 Score=90.50 Aligned_cols=189 Identities=21% Similarity=0.247 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc---hhhHHHHHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN---ERDIKTAWEAV 169 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~---~~dI~~a~eal 169 (620)
...+.++++++++.|.+.|++.||+|+|..+....+.++.|++..++ +.+....++. ..+++.+++
T Consensus 11 D~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~---------~~ii~D~kl~d~g~~~v~~a~~-- 79 (430)
T PRK07028 11 DLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPD---------HTIVADMKTMDTGAIEVEMAAK-- 79 (430)
T ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCC---------CEEEEEeeeccchHHHHHHHHH--
Confidence 35789999999999999999999999986556667888888875321 2344443333 235666655
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE---cCCCCCCCCHHHHHHHHHHHHHcCCc
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPEDAGRSDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f---~~ed~~r~d~e~l~~~~~~~~~aGa~ 246 (620)
+|.+.||+....++. .+.+.+++++++|.. +.+ +++ ++. +.++.+.+.|+|
T Consensus 80 --aGAdgV~v~g~~~~~---------------~~~~~i~~a~~~G~~-~~~g~~s~~----t~~----e~~~~a~~~GaD 133 (430)
T PRK07028 80 --AGADIVCILGLADDS---------------TIEDAVRAARKYGVR-LMADLINVP----DPV----KRAVELEELGVD 133 (430)
T ss_pred --cCCCEEEEecCCChH---------------HHHHHHHHHHHcCCE-EEEEecCCC----CHH----HHHHHHHhcCCC
Confidence 489999986544321 135678889999975 554 432 222 235667788999
Q ss_pred EEeecCCccc---cCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccH
Q 007056 247 TLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASL 323 (620)
Q Consensus 247 ~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~l 323 (620)
.|.+. .|. ..+....+.++.+++.++ ++|.+|+ |....|...++++||+.|=..=.= .+..+.
T Consensus 134 ~I~~~--pg~~~~~~~~~~~~~l~~l~~~~~----iPI~a~G----GI~~~n~~~~l~aGAdgv~vGsaI----~~~~d~ 199 (430)
T PRK07028 134 YINVH--VGIDQQMLGKDPLELLKEVSEEVS----IPIAVAG----GLDAETAAKAVAAGADIVIVGGNI----IKSADV 199 (430)
T ss_pred EEEEE--eccchhhcCCChHHHHHHHHhhCC----CcEEEEC----CCCHHHHHHHHHcCCCEEEEChHH----cCCCCH
Confidence 99765 232 122223357777776552 6788888 999999999999999975322111 123345
Q ss_pred HHHHHHHHh
Q 007056 324 EEVVMAFKC 332 (620)
Q Consensus 324 Eevv~~L~~ 332 (620)
.+.+..|+.
T Consensus 200 ~~~~~~l~~ 208 (430)
T PRK07028 200 TEAARKIRE 208 (430)
T ss_pred HHHHHHHHH
Confidence 555555543
No 51
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.03 E-value=0.00022 Score=73.97 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEE
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 152 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 152 (620)
+.+.-+++++.|.+.|+|.||+|+|-+.|- | ++.++++++. . . .| .+.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-----~---~-~p~vlm 97 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-----I---K-APIVIF 97 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-----C---C-CCEEEE
Confidence 678889999999999999999999977651 1 2223333221 0 1 13 233
Q ss_pred eecccch-hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCH
Q 007056 153 GLSRCNE-RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDR 230 (620)
Q Consensus 153 ~~~r~~~-~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f-~~ed~~r~d~ 230 (620)
++--... -++++.++..+.+|++.|-+..= . ++...+..+.++++|+..|.+ +| -++.
T Consensus 98 ~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL------------P----~ee~~~~~~~~~~~gi~~I~lv~P----tT~~ 157 (263)
T CHL00200 98 TYYNPVLHYGINKFIKKISQAGVKGLIIPDL------------P----YEESDYLISVCNLYNIELILLIAP----TSSK 157 (263)
T ss_pred ecccHHHHhCHHHHHHHHHHcCCeEEEecCC------------C----HHHHHHHHHHHHHcCCCEEEEECC----CCCH
Confidence 3332222 36777777778889998765321 1 244668889999999986655 44 3566
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCccc--cCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchH-HHHHHHHHHhcCcEE
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAGARQV 307 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv~aGA~~V 307 (620)
+.+..+++.+. -=+..+..+=+.|. ..|.++.++++.+|+... .||.+ ++|-. -.++.....+|||.|
T Consensus 158 eri~~i~~~a~-gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~----~Pi~v----GFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 158 SRIQKIARAAP-GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN----KPIIL----GFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHHHHHHHhCC-CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC----CCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence 77766665431 11334445677776 568899999999999763 45554 46666 345566677889875
No 52
>PLN02591 tryptophan synthase
Probab=98.02 E-value=0.00049 Score=70.89 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEE
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 152 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 152 (620)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++++++.. . .| .+.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~--------~-~p~ilm 84 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQL--------S-CPIVLF 84 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC--------C-CCEEEE
Confidence 567789999999999999999999987651 1 22222222110 1 13 233
Q ss_pred eecccch-hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHH
Q 007056 153 GLSRCNE-RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 231 (620)
Q Consensus 153 ~~~r~~~-~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e 231 (620)
++..... -++++.++.++++|++.+-+.. .. ++...+..+.++++|+..|.|-+. .++.+
T Consensus 85 ~Y~N~i~~~G~~~F~~~~~~aGv~GviipD------------LP----~ee~~~~~~~~~~~gl~~I~lv~P---tt~~~ 145 (250)
T PLN02591 85 TYYNPILKRGIDKFMATIKEAGVHGLVVPD------------LP----LEETEALRAEAAKNGIELVLLTTP---TTPTE 145 (250)
T ss_pred ecccHHHHhHHHHHHHHHHHcCCCEEEeCC------------CC----HHHHHHHHHHHHHcCCeEEEEeCC---CCCHH
Confidence 3332222 3788888888889999876542 22 345668889999999976655322 45566
Q ss_pred HHHHHHHHHHHcC-CcEEeecCCccc--cCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 232 FLYEILGEVIKVG-ATTLNIPDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 232 ~l~~~~~~~~~aG-a~~I~L~DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+..+++.. -| ...|...-+.|. ..|.++.++++.+|+.. +.+ +.+||-.++ -.++-...+.|||.|
T Consensus 146 ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~P-v~vGFGI~~-----~e~v~~~~~~GADGv 215 (250)
T PLN02591 146 RMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKP-VAVGFGISK-----PEHAKQIAGWGADGV 215 (250)
T ss_pred HHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCc-eEEeCCCCC-----HHHHHHHHhcCCCEE
Confidence 666655542 12 233344556665 56899999999999853 322 445543333 346667778888875
No 53
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.98 E-value=0.00084 Score=69.48 Aligned_cols=174 Identities=20% Similarity=0.283 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhcccccccCCccceEEe
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
+.+.-+++++.|.+.|+|.||+|+|-+.|- | ++.++.+++... . .|.+ .
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-------~-~plv-~ 92 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-------N-IPIG-L 92 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------C-CCEE-E
Confidence 677889999999999999999999976551 1 233444433200 0 1212 2
Q ss_pred ecccch---hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCC
Q 007056 154 LSRCNE---RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSD 229 (620)
Q Consensus 154 ~~r~~~---~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f-~~ed~~r~d 229 (620)
++=.++ -++++.++.++.+|++.+-+..- -.+...+.++.++++|+..+.+ +| .++
T Consensus 93 m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv~P----~T~ 152 (256)
T TIGR00262 93 LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLVAP----NAD 152 (256)
T ss_pred EEeccHHhhhhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEECC----CCC
Confidence 222232 35566666677789887655321 1244667889999999875533 44 356
Q ss_pred HHHHHHHHHHHHHcC-CcEEeecCCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcE
Q 007056 230 RKFLYEILGEVIKVG-ATTLNIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 230 ~e~l~~~~~~~~~aG-a~~I~L~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 306 (620)
.+.+..+++.+ .| ...+....+.|.- .+.++.+.++.+|+..+. .+.++++.++ -.++..+.++||+.
T Consensus 153 ~eri~~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~--pi~vgfGI~~-----~e~~~~~~~~GADg 223 (256)
T TIGR00262 153 DERLKQIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK--PVLVGFGISK-----PEQVKQAIDAGADG 223 (256)
T ss_pred HHHHHHHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC--CEEEeCCCCC-----HHHHHHHHHcCCCE
Confidence 67776666542 22 2334445667763 567799999999997642 2555544443 56777888999987
Q ss_pred E
Q 007056 307 V 307 (620)
Q Consensus 307 V 307 (620)
|
T Consensus 224 v 224 (256)
T TIGR00262 224 V 224 (256)
T ss_pred E
Confidence 5
No 54
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=97.88 E-value=0.0021 Score=68.11 Aligned_cols=221 Identities=20% Similarity=0.146 Sum_probs=133.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHH----HHHHHHHHHhcccccccCCccceEEeecccc--------hhh
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCN--------ERD 161 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~--------~~d 161 (620)
.++.|+.++.++...+.|++.|-+........+. +.++.|.+... ...++++++.. ...
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~---------~i~~~~~s~~e~~~~~~~~g~~ 105 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFP---------DVHIHAFSPMEVYFLAKNEGLS 105 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCC---------CceEEecCHHHHHHHHHHcCCC
Confidence 5899999999999999999988775321111223 44455544311 12455555421 111
Q ss_pred HHHHHHHHhcCCCCEEE-EEec-CCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHH
Q 007056 162 IKTAWEAVKYAKRPRIH-TFIA-TSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 236 (620)
Q Consensus 162 I~~a~eal~~ag~~~v~-i~~~-~Sd~h~~~~l---~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~ 236 (620)
.+..++.|+++|.++++ .-.- .++- +.+++ +.+.++ ..++++.|++.|++ ++.+..-+-.-+++...+.
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~-~~~~i~~~~~t~~~----~l~~i~~a~~~Gi~-~~s~~iiG~~Et~ed~~~~ 179 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDS-VRRKICPNKLSSDE----WLEVIKTAHRLGIP-TTATMMFGHVENPEHRVEH 179 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHH-HHHhhCCCCCCHHH----HHHHHHHHHHcCCC-ceeeEEecCCCCHHHHHHH
Confidence 34556778889998874 2111 2222 22333 225444 35789999999986 4433333323466777788
Q ss_pred HHHHHHcCCcEEe----e------cCCc-------cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH
Q 007056 237 LGEVIKVGATTLN----I------PDTV-------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 299 (620)
Q Consensus 237 ~~~~~~aGa~~I~----L------~DTv-------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 299 (620)
+..+.+.+.+... + .+|- ...+|.+..++|+..|=-+|.+..+..++ +.+|.-. ...|
T Consensus 180 l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~---~~l~~~~--~~~~ 254 (309)
T TIGR00423 180 LLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW---VKLGLKL--AQVA 254 (309)
T ss_pred HHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc---hhcCHHH--HHHH
Confidence 8888887765321 2 2552 23678999999999888788654455555 3445322 4788
Q ss_pred HHhcCcEEeecccc-----c-cCCcC-cccHHHHHHHHHhcc
Q 007056 300 ACAGARQVEVTING-----I-GERAG-NASLEEVVMAFKCRG 334 (620)
Q Consensus 300 v~aGA~~Vd~Ti~G-----l-GERaG-Na~lEevv~~L~~~~ 334 (620)
+.+||+-+++|+.. . |...+ ..+.++++..++..|
T Consensus 255 l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g 296 (309)
T TIGR00423 255 LEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAG 296 (309)
T ss_pred HhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcC
Confidence 99999999998732 1 11122 345777777666543
No 55
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=97.87 E-value=0.001 Score=71.88 Aligned_cols=223 Identities=11% Similarity=0.018 Sum_probs=135.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHH----HHHHHHHHHhcccccccCCccceEEeecccc--------hhh
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCN--------ERD 161 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~--------~~d 161 (620)
.++.++.++.++...+.|++.|-+.+......++ +.++.|.+..++ ..+++++... ...
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~---------i~i~~~~~~ei~~~~~~~g~~ 148 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD---------LHVKAFTAVEIHHFSKISGLP 148 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---------ceEEeCCHHHHHHHHHHcCCC
Confidence 4899999999999999999988775421111123 445555443211 2345543211 111
Q ss_pred HHHHHHHHhcCCCCEEEEEe--cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHH
Q 007056 162 IKTAWEAVKYAKRPRIHTFI--ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 239 (620)
Q Consensus 162 I~~a~eal~~ag~~~v~i~~--~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~ 239 (620)
.+..++.|+++|.++++-.. ..++-.. .++.++. ...++..++++.|++.|++ ++-+..-+---+++...+.+..
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~-~~i~~~~-~~~~~~l~~i~~a~~~Gi~-~~sg~i~GlgEt~edrv~~l~~ 225 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVR-QQICPEK-ISAERWLEIHRTAHELGLK-TNATMLYGHIETPAHRVDHMLR 225 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHH-hhcCCCC-CCHHHHHHHHHHHHHcCCC-cceEEEeeCCCCHHHHHHHHHH
Confidence 24446778888998875211 1122222 2333321 1234556789999999986 4333222333556777788888
Q ss_pred HHHcCCcE------Eee----cCCc------cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhc
Q 007056 240 VIKVGATT------LNI----PDTV------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 303 (620)
Q Consensus 240 ~~~aGa~~------I~L----~DTv------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 303 (620)
+.+.+.+. |-+ ++|- ...+|.+..++++..|=-+|++++++..+=.- |. ..+..++.+|
T Consensus 226 Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w~~~---~~--~~~~~~L~~G 300 (351)
T TIGR03700 226 LRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYWVML---GL--KLAQVALAFG 300 (351)
T ss_pred HHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccccc---CH--HHHHHHHhcC
Confidence 88777643 333 2553 45789999999998887777655555544322 33 3568999999
Q ss_pred CcEEeecccc--------ccCCcCcccHHHHHHHHHhcc
Q 007056 304 ARQVEVTING--------IGERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 304 A~~Vd~Ti~G--------lGERaGNa~lEevv~~L~~~~ 334 (620)
|+-+.+|+.. -.++. ..+.+++...++..|
T Consensus 301 and~ggt~~~e~v~~~~g~~~~~-~~~~~~l~~~i~~~g 338 (351)
T TIGR03700 301 VNDLDGTVVEEKIGHDAGAKSPQ-ALSKDELVRLIRDAG 338 (351)
T ss_pred CCCCCccCccceeeccccCCCCC-CCCHHHHHHHHHHcC
Confidence 9999988763 22222 356777777777644
No 56
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=97.83 E-value=0.0015 Score=70.14 Aligned_cols=223 Identities=18% Similarity=0.106 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe---cCCCChhHH-HHHHHHHHHhcccccccCCccceEEeeccc--------chh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAG---FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRC--------NER 160 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvG---fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~--------~~~ 160 (620)
..++.++.++.++.+.+.|++.|-+. .|....+.+ +.++.|.+.... ..+.++++. +--
T Consensus 70 ~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~---------i~~~~~s~~ei~~~~~~~g~ 140 (340)
T TIGR03699 70 YVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH---------IHIHSFSPVEIVYIAKKEGL 140 (340)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---------cCCCCCCHHHHHHHhccCCC
Confidence 35899999999999999999998884 232222222 355555543211 011112111 100
Q ss_pred hHHHHHHHHhcCCCCEEEEE--ecCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHH
Q 007056 161 DIKTAWEAVKYAKRPRIHTF--IATSGIHMEHKLR--KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 236 (620)
Q Consensus 161 dI~~a~eal~~ag~~~v~i~--~~~Sd~h~~~~l~--~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~ 236 (620)
..+..++.++.+|+++++-. -..++-..+.... .|.++ ..++++.+++.|+. ++.+..-+-.-+++...+.
T Consensus 141 ~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~----~l~~i~~a~~~Gi~-v~~~~iiGlgEt~ed~~~~ 215 (340)
T TIGR03699 141 SLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEE----WLEVMETAHKLGLP-TTATMMFGHVETLEDRIEH 215 (340)
T ss_pred CHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCC-ccceeEeeCCCCHHHHHHH
Confidence 11455677888899887521 1133333332222 35554 46789999999986 4433332324556777888
Q ss_pred HHHHHHcCCcEEe----ec------CCc----cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh
Q 007056 237 LGEVIKVGATTLN----IP------DTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 302 (620)
Q Consensus 237 ~~~~~~aGa~~I~----L~------DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 302 (620)
++.+.+.+.+.+. +| +|- ...+|.+..++|+..|--+|+...+.-++ ..+| ......|+.+
T Consensus 216 l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~---~~~g--~~~~~~~l~~ 290 (340)
T TIGR03699 216 LERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW---VTQG--KEVGQLALHF 290 (340)
T ss_pred HHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc---cccC--hHHHHHHHhc
Confidence 8888888876522 22 432 34688999999999998888643344443 2233 3345779999
Q ss_pred cCcEEeeccc--cccCCcCccc---HHHHHHHHHhcc
Q 007056 303 GARQVEVTIN--GIGERAGNAS---LEEVVMAFKCRG 334 (620)
Q Consensus 303 GA~~Vd~Ti~--GlGERaGNa~---lEevv~~L~~~~ 334 (620)
||+-+++|+. ++-..+|... +++++..++..|
T Consensus 291 Gan~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~g 327 (340)
T TIGR03699 291 GANDFGSTMLEENVVAAAGATHRASREEIIRIIREAG 327 (340)
T ss_pred CCccCCCccccccccccCCCCCCCCHHHHHHHHHHcC
Confidence 9999998875 3333444443 567776666543
No 57
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.78 E-value=0.001 Score=68.83 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEE
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 152 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~-~i~ 152 (620)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++++++. . . . .| .+.
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~---~-~---~-~p~vlm 95 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREK---D-P---T-IPIVLM 95 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---C-C---C-CCEEEE
Confidence 677889999999999999999999987651 1 2333333321 1 0 1 12 233
Q ss_pred eecccchh-hHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHH
Q 007056 153 GLSRCNER-DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 231 (620)
Q Consensus 153 ~~~r~~~~-dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e 231 (620)
++.-.... ++++.++.++++|++.+.+.. .. ++.+.+.++.++++|++.|.|... .++.+
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGviipD------------Lp----~ee~~~~~~~~~~~gl~~I~lvap---~t~~e 156 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLIIPD------------LP----PEEAEELRAAAKKHGLDLIFLVAP---TTTDE 156 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEECC------------CC----HHHHHHHHHHHHHcCCcEEEEeCC---CCCHH
Confidence 33322223 778888888899999887731 22 356778899999999987765442 34556
Q ss_pred HHHHHHHHHHHcCCcEEee---cCCccc--cCHHHHHHHHHHHHHhCCCCCceeEEEecCC
Q 007056 232 FLYEILGEVIKVGATTLNI---PDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQN 287 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L---~DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN 287 (620)
.+..+++. ...-|++ .=++|. ..|..+.++++.+++..+ . .+.+++..+|
T Consensus 157 ri~~i~~~----s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~-~-pv~vGfGI~~ 211 (258)
T PRK13111 157 RLKKIASH----ASGFVYYVSRAGVTGARSADAADLAELVARLKAHTD-L-PVAVGFGIST 211 (258)
T ss_pred HHHHHHHh----CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC-C-cEEEEcccCC
Confidence 55554443 3344544 334554 567789999999998653 2 2555554444
No 58
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.72 E-value=0.0018 Score=69.68 Aligned_cols=221 Identities=18% Similarity=0.119 Sum_probs=130.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe---cCCCChhH-HHHHHHHHHHhcccccccCCccceEEeeccc-------c-hh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAG---FPAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-------N-ER 160 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvG---fP~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-------~-~~ 160 (620)
..++.++.++.++.+.+.|++.|=+. .|....+. .+.++.|.+..+. ..++++++. + -.
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~---------i~~~~~t~~ei~~~~~~~g~ 138 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG---------MHIHAFSPMEVYYGARNSGL 138 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC---------ceEEecCHHHHHHHHHHcCC
Confidence 45899999999999999999988774 23221111 2445555443110 234444321 0 01
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHHH---HHHhCC---CHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH
Q 007056 161 DIKTAWEAVKYAKRPRIHTFIATSGIHM---EHKLRK---TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 234 (620)
Q Consensus 161 dI~~a~eal~~ag~~~v~i~~~~Sd~h~---~~~l~~---t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~ 234 (620)
..+..++.|+++|+++++ ....+... .+++.. +.+ ...++++.+++.|+. ++-+...+..-+.+...
T Consensus 139 ~~~e~l~~LkeAGl~~i~--~~~~E~~~~~v~~~i~~~~~~~~----~~~~~i~~a~~~Gi~-v~s~~i~G~~Et~ed~~ 211 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMP--GTAAEILDDEVRKVICPDKLSTA----EWIEIIKTAHKLGIP-TTATIMYGHVETPEHWV 211 (343)
T ss_pred CHHHHHHHHHHhCccccc--CcchhhcCHHHHHhcCCCCCCHH----HHHHHHHHHHHcCCc-ccceEEEecCCCHHHHH
Confidence 124456778888999876 11222222 222322 443 346789999999986 43222222234557777
Q ss_pred HHHHHHHHcCCcE------Eeec----CCc--------cccCHHHHHHHHHHHHHhCCCC-CceeEEEecCCCcchHHHH
Q 007056 235 EILGEVIKVGATT------LNIP----DTV--------GITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTAN 295 (620)
Q Consensus 235 ~~~~~~~~aGa~~------I~L~----DTv--------G~~~P~~v~~li~~l~~~~~~~-~~v~i~~H~HND~GlAvAN 295 (620)
+.+..+.+.+.+. |-++ .|- ..+.|+++-++|+..|=-+|+. ..+.-++ ..+|.. -
T Consensus 212 ~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~---~~l~~~--~ 286 (343)
T TIGR03551 212 DHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW---VKLGKK--L 286 (343)
T ss_pred HHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc---cccCHH--H
Confidence 7777777777653 3222 332 2357899999999998888863 2455555 244443 3
Q ss_pred HHHHHHhcCcEEeecccc------ccCCcC-cccHHHHHHHHHhcc
Q 007056 296 TIAGACAGARQVEVTING------IGERAG-NASLEEVVMAFKCRG 334 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~G------lGERaG-Na~lEevv~~L~~~~ 334 (620)
...++.+||+-+++|+.. -|...+ ..++++++..++..|
T Consensus 287 ~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g 332 (343)
T TIGR03551 287 AQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAG 332 (343)
T ss_pred HHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcC
Confidence 488899999999999754 122222 235677777666543
No 59
>PRK08445 hypothetical protein; Provisional
Probab=97.67 E-value=0.0059 Score=65.98 Aligned_cols=226 Identities=14% Similarity=0.045 Sum_probs=134.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchh--------hHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER--------DIKT 164 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~--------dI~~ 164 (620)
..++.++.++.++...+.|.+.|=+-.-....-+.+.+..+.+.+....++ ..+++++..... ..+.
T Consensus 71 y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~-----i~~~a~s~~ei~~~a~~~~~~~~e 145 (348)
T PRK08445 71 YILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPT-----ITIHGFSAVEIDYIAKISKISIKE 145 (348)
T ss_pred eeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-----cEEEEccHHHHHHHHHHhCCCHHH
Confidence 367999999999999999998663321111112334443333333222111 245555443111 2255
Q ss_pred HHHHHhcCCCCEEE-E-EecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHH
Q 007056 165 AWEAVKYAKRPRIH-T-FIATSGIHMEHKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEV 240 (620)
Q Consensus 165 a~eal~~ag~~~v~-i-~~~~Sd~h~~~~l--~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~ 240 (620)
.++.|+++|+++++ . .=..+|-..+.-. +.|.++. .+.++.|++.|++ ++-+...+.--+++...+.+..+
T Consensus 146 ~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~-~~sg~i~G~~Et~edr~~~l~~l 220 (348)
T PRK08445 146 VLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMK-STATMMFGTVENDEEIIEHWERI 220 (348)
T ss_pred HHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCe-eeeEEEecCCCCHHHHHHHHHHH
Confidence 67788999999874 4 4444444443322 5666654 4889999999996 43332222234455566666666
Q ss_pred HHcCCcE-----E-----eecCCc--------cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh
Q 007056 241 IKVGATT-----L-----NIPDTV--------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 302 (620)
Q Consensus 241 ~~aGa~~-----I-----~L~DTv--------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 302 (620)
.+.+.+. + .-++|- ..++|.+.-++++..|=-+|+...++-++. .+|..+ +..|+.+
T Consensus 221 reLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~~---~~g~~~--~~~~L~~ 295 (348)
T PRK08445 221 RDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSWV---TQGSYI--GQLALLF 295 (348)
T ss_pred HHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCCc---ccCHHH--HHHHHhc
Confidence 6554421 1 223332 247889999999888877776555666662 456655 4788999
Q ss_pred cCcEEeeccccc------cCCcCcccHHHHHHHHHhcc
Q 007056 303 GARQVEVTINGI------GERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 303 GA~~Vd~Ti~Gl------GERaGNa~lEevv~~L~~~~ 334 (620)
||+-+++|+..= |...| .+.++++..++..|
T Consensus 296 Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g 332 (348)
T PRK08445 296 GANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIG 332 (348)
T ss_pred CCccCccccccccchhccCCCCC-CCHHHHHHHHHHcC
Confidence 999999999641 11222 34666666666544
No 60
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.38 E-value=0.0044 Score=64.20 Aligned_cols=175 Identities=24% Similarity=0.310 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhcccccccCCccceEEe
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++++.+.-.+ ....+.+
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~-------~pivlm~ 94 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPD-------IPIVLMT 94 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTS-------SEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCC-------CCEEEEe
Confidence 578889999999999999999999987651 1 2334444422111 1112333
Q ss_pred eccc-chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCHH
Q 007056 154 LSRC-NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRK 231 (620)
Q Consensus 154 ~~r~-~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f-~~ed~~r~d~e 231 (620)
+--. -..++++.++.++++|++.+-+.. -+ . +...+..+.++++|+..|.| +| .++.+
T Consensus 95 Y~N~i~~~G~e~F~~~~~~aGvdGlIipD--LP----------~----ee~~~~~~~~~~~gl~~I~lv~p----~t~~~ 154 (259)
T PF00290_consen 95 YYNPIFQYGIERFFKEAKEAGVDGLIIPD--LP----------P----EESEELREAAKKHGLDLIPLVAP----TTPEE 154 (259)
T ss_dssp -HHHHHHH-HHHHHHHHHHHTEEEEEETT--SB----------G----GGHHHHHHHHHHTT-EEEEEEET----TS-HH
T ss_pred eccHHhccchHHHHHHHHHcCCCEEEEcC--CC----------h----HHHHHHHHHHHHcCCeEEEEECC----CCCHH
Confidence 3211 124567667667777888765532 11 1 22345667788899876666 44 46667
Q ss_pred HHHHHHHHHHHcC-CcEEeecCCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 232 FLYEILGEVIKVG-ATTLNIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 232 ~l~~~~~~~~~aG-a~~I~L~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+..+++... | +..+...-++|.- .|.++.++++.+|+.. +. .+.+| +|....--...+..|||.|
T Consensus 155 Ri~~i~~~a~--gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~-Pv~vG------FGI~~~e~~~~~~~~aDGv 223 (259)
T PF00290_consen 155 RIKKIAKQAS--GFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DL-PVAVG------FGISTPEQAKKLAAGADGV 223 (259)
T ss_dssp HHHHHHHH-S--SEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS--EEEE------SSS-SHHHHHHHHTTSSEE
T ss_pred HHHHHHHhCC--cEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-Cc-ceEEe------cCCCCHHHHHHHHccCCEE
Confidence 7766665432 2 2333445566654 5789999999999986 22 24444 4555555566666888775
No 61
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.38 E-value=0.019 Score=59.01 Aligned_cols=175 Identities=16% Similarity=0.182 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChh-H----H------------HHHHHHHHHhcccccccCCccceE-Eeecc
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKE-D----F------------EAVRTIAKEVGNAVDAESGYVPVI-CGLSR 156 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d----~------------e~v~~i~~~~~~~~~~~~~l~~~i-~~~~r 156 (620)
-+.++-.++++.|++. +|.||+|+|.+.|. | . +.++.+++.. -.|.+ .+.-.
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~---------~~Pl~lM~y~n 84 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDV---------SVPIILMTYLE 84 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccC---------CCCEEEEEecc
Confidence 4778889999999998 99999999877662 1 1 1233332210 01321 11111
Q ss_pred cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCHHHHHH
Q 007056 157 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 157 ~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~ed~~r~d~e~l~~ 235 (620)
....+.+..++.++.+|++.|.+..-. . |..+...+.+++++++|++. +.++| .++.+.+..
T Consensus 85 ~~~~~~~~~i~~~~~~Gadgvii~dlp----~---------e~~~~~~~~~~~~~~~Gl~~~~~v~p----~T~~e~l~~ 147 (244)
T PRK13125 85 DYVDSLDNFLNMARDVGADGVLFPDLL----I---------DYPDDLEKYVEIIKNKGLKPVFFTSP----KFPDLLIHR 147 (244)
T ss_pred hhhhCHHHHHHHHHHcCCCEEEECCCC----C---------CcHHHHHHHHHHHHHcCCCEEEEECC----CCCHHHHHH
Confidence 113455666666677899987663210 0 11234567889999999974 34466 466776666
Q ss_pred HHHHHHHcCCcEEeec--CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcch-HHHHHHHHHHhcCcEE
Q 007056 236 ILGEVIKVGATTLNIP--DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 307 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~--DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~aGA~~V 307 (620)
+++. ....+++. -..|...+..+.+.++.+++..++ .+|. -|.|. ...|.-.++++||+.+
T Consensus 148 ~~~~----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~---~~i~----v~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 148 LSKL----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGN---KYLV----VGFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred HHHh----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCC---CCEE----EeCCcCCHHHHHHHHHcCCCEE
Confidence 5553 33333331 123556788899999999988753 2333 24666 3456666679999875
No 62
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0068 Score=62.65 Aligned_cols=179 Identities=19% Similarity=0.200 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H---------------------HHHHHHHHHHhcccccccCCccceEEe
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d---------------------~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
+.+.-+++++.|.+.|+|.||+|+|-+.|- | ++.++++.+.- . ...-.+.+
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~-~------~~Pivlm~ 101 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKG-V------KVPIVLMT 101 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-C------CCCEEEEE
Confidence 678889999999999999999999977551 1 23333333210 1 11112223
Q ss_pred eccc-chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH
Q 007056 154 LSRC-NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKF 232 (620)
Q Consensus 154 ~~r~-~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~ 232 (620)
+.-. -..+++..++.++++|++.+-+..= . ++...+..+.++++|+..|.+.+. -++.+.
T Consensus 102 Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL------------P----~ee~~~~~~~~~~~gi~~I~lvaP---tt~~~r 162 (265)
T COG0159 102 YYNPIFNYGIEKFLRRAKEAGVDGLLVPDL------------P----PEESDELLKAAEKHGIDPIFLVAP---TTPDER 162 (265)
T ss_pred eccHHHHhhHHHHHHHHHHcCCCEEEeCCC------------C----hHHHHHHHHHHHHcCCcEEEEeCC---CCCHHH
Confidence 2221 2357777777778889998765321 1 234456778888999986666543 456666
Q ss_pred HHHHHHHHHHcC-CcEEeecCCccccCH--HHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 233 LYEILGEVIKVG-ATTLNIPDTVGITMP--TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 233 l~~~~~~~~~aG-a~~I~L~DTvG~~~P--~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
+.++++.. .| ..-+...=++|.-.| ..+.++++.+|+... +|+. -|.|+.+...+-+.+.- -|+
T Consensus 163 l~~i~~~a--~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~----~Pv~------vGFGIs~~e~~~~v~~~-ADG 229 (265)
T COG0159 163 LKKIAEAA--SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTD----VPVL------VGFGISSPEQAAQVAEA-ADG 229 (265)
T ss_pred HHHHHHhC--CCcEEEEecccccCCCcccchhHHHHHHHHHHhcC----CCeE------EecCcCCHHHHHHHHHh-CCe
Confidence 66665532 13 345555667787777 338999999998762 4454 35555555444444433 455
Q ss_pred cccc
Q 007056 310 TING 313 (620)
Q Consensus 310 Ti~G 313 (620)
-|-|
T Consensus 230 VIVG 233 (265)
T COG0159 230 VIVG 233 (265)
T ss_pred EEEc
Confidence 5655
No 63
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.28 E-value=0.017 Score=62.98 Aligned_cols=224 Identities=20% Similarity=0.128 Sum_probs=133.5
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhHHHHHHHHHHHhcccccccCCccceEEeecc--------cchh
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR--------CNER 160 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r--------~~~~ 160 (620)
...++.++.++.++.+.+.|+..|-+.. |... +++.+..+.+.++...+ + ..+++++. ..-.
T Consensus 88 ~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~--~~e~~~~~i~~ik~~~~-~----i~i~a~s~~ei~~~~~~~G~ 160 (371)
T PRK07360 88 AFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD--SLEFYLEILEAIKEEFP-D----IHLHAFSPMEVYFAAREDGL 160 (371)
T ss_pred CeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC--cHHHHHHHHHHHHHhCC-C----cceeeCCHHHHHHHHhhcCC
Confidence 3469999999999999999999988853 3221 23333333332221101 0 23454421 0011
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHH---HHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH
Q 007056 161 DIKTAWEAVKYAKRPRIHTFIATSGI---HMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 234 (620)
Q Consensus 161 dI~~a~eal~~ag~~~v~i~~~~Sd~---h~~~~l---~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~ 234 (620)
-.+..++.|+++|+++++ ....++ .+.+++ +.+.++. .++++.|+++|++ ++-+...+---+++...
T Consensus 161 ~~~e~l~~LkeAGld~~~--~t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~-~~sg~i~G~gEt~edrv 233 (371)
T PRK07360 161 SYEEVLKALKDAGLDSMP--GTAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLP-TTSTMMYGHVETPEHRI 233 (371)
T ss_pred CHHHHHHHHHHcCCCcCC--CcchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCC-ceeeEEeeCCCCHHHHH
Confidence 124456778889999885 112222 112222 2354443 5889999999986 44333223335677888
Q ss_pred HHHHHHHHcCCcE------Eeec----CC-----cc---ccCHHHHHHHHHHHHHhCCC-CCceeEEEecCCCcchHHHH
Q 007056 235 EILGEVIKVGATT------LNIP----DT-----VG---ITMPTEFGKLIADIKANTPG-IENVVISTHCQNDLGLSTAN 295 (620)
Q Consensus 235 ~~~~~~~~aGa~~------I~L~----DT-----vG---~~~P~~v~~li~~l~~~~~~-~~~v~i~~H~HND~GlAvAN 295 (620)
+.+..+.+.+.+. |-++ +| .. ...|.+.-++|+..|=-+|+ ...++-++ +.+|.. -
T Consensus 234 ~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~---~~lg~~--~ 308 (371)
T PRK07360 234 DHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW---VKLGLK--L 308 (371)
T ss_pred HHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc---eeeCHH--H
Confidence 8888888887755 3322 33 21 14688888888888877886 22345444 234433 3
Q ss_pred HHHHHHhcCcEEeecccc------ccCCcC-cccHHHHHHHHHhcc
Q 007056 296 TIAGACAGARQVEVTING------IGERAG-NASLEEVVMAFKCRG 334 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~G------lGERaG-Na~lEevv~~L~~~~ 334 (620)
...++.+||+-+.+|+.+ -|.... ..+++++...++..|
T Consensus 309 ~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G 354 (371)
T PRK07360 309 AQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIG 354 (371)
T ss_pred HHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcC
Confidence 567899999999988865 233333 257888888887654
No 64
>PRK08444 hypothetical protein; Provisional
Probab=97.21 E-value=0.027 Score=61.06 Aligned_cols=227 Identities=16% Similarity=0.136 Sum_probs=134.8
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc--------hhhHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN--------ERDIK 163 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~--------~~dI~ 163 (620)
...|+.++.++.++.+.+.|++.|=+-.....+.+++.+..+.+.++...++ ..+++|+..- -..++
T Consensus 77 ~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~-----i~i~a~s~~Ei~~~a~~~g~~~~ 151 (353)
T PRK08444 77 PYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPN-----LHVKAMTAAEVDFLSRKFGKSYE 151 (353)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCC-----ceEeeCCHHHHHHHHHHcCCCHH
Confidence 3579999999999999999999887743211112344333333332221111 3566654322 12345
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHH---HHHHh--CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIH---MEHKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 238 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h---~~~~l--~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~ 238 (620)
..++.|+++|.++++- ..-++. +..++ .++.. ++..+..+.|+++|+. ++-+...+.--+++...+.+.
T Consensus 152 e~l~~LkeAGl~~~~g--~~aEi~~~~vr~~I~p~k~~~---~~~~~i~~~a~~~Gi~-~~sg~l~G~gEt~edrv~hl~ 225 (353)
T PRK08444 152 EVLEDMLEYGVDSMPG--GGAEIFDEEVRKKICKGKVSS---ERWLEIHKYWHKKGKM-SNATMLFGHIENREHRIDHML 225 (353)
T ss_pred HHHHHHHHhCcccCCC--CCchhcCHHHHhhhCCCCCCH---HHHHHHHHHHHHcCCC-ccceeEEecCCCHHHHHHHHH
Confidence 5667788899987642 222221 11222 12222 3445667889999986 433333333456677777777
Q ss_pred HHHHcCCcE------Eee----cCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcC
Q 007056 239 EVIKVGATT------LNI----PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGA 304 (620)
Q Consensus 239 ~~~~aGa~~------I~L----~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA 304 (620)
.+.+.+.+. |-+ +.| ....+|.+.-++++..|=-+|++++++..| --++..-+..|+.+||
T Consensus 226 ~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ni~a~w-----~~~g~~~~q~~L~~Ga 300 (353)
T PRK08444 226 RLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNIPHIKAYW-----ATLTLNLALVAQEFGA 300 (353)
T ss_pred HHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc-----ccCcHHHHHHHHhcCC
Confidence 777776543 223 344 235788999999988887777543333322 1245778899999999
Q ss_pred cEEeecccc--ccCCcC-----cccHHHHHHHHHhcc
Q 007056 305 RQVEVTING--IGERAG-----NASLEEVVMAFKCRG 334 (620)
Q Consensus 305 ~~Vd~Ti~G--lGERaG-----Na~lEevv~~L~~~~ 334 (620)
+-+++|+.. +---+| ..+.+++...++..|
T Consensus 301 ~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g 337 (353)
T PRK08444 301 NDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSG 337 (353)
T ss_pred ccCccccccccchhhccCCCCCCCCHHHHHHHHHHcC
Confidence 999999743 111233 456777777776644
No 65
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.94 E-value=0.042 Score=54.14 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
..+.++-+++++.|.+. ++.||+|+|...+.-.+.++.+.+...+ .+.++.+.-.... ...++.+..+|
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~--------~~i~~~~~v~~~~--~~~~~~~~~aG 77 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPD--------KIIVADLKTADAG--ALEAEMAFKAG 77 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCC--------CEEEEEEEecccc--HHHHHHHHhcC
Confidence 35788999999999999 9999999886444336777777764221 1233333222221 11123444568
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE---EcCCCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE---FSPEDAGRSDRKFLYEILGEVIKVGATTLNI 250 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~---f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L 250 (620)
.+.+.+.....+ +...+.+++++++|+. +. .+| .+++.+. + +...|++.+.+
T Consensus 78 ad~i~~h~~~~~---------------~~~~~~i~~~~~~g~~-~~v~~~~~-----~t~~e~~---~-~~~~~~d~v~~ 132 (202)
T cd04726 78 ADIVTVLGAAPL---------------STIKKAVKAAKKYGKE-VQVDLIGV-----EDPEKRA---K-LLKLGVDIVIL 132 (202)
T ss_pred CCEEEEEeeCCH---------------HHHHHHHHHHHHcCCe-EEEEEeCC-----CCHHHHH---H-HHHCCCCEEEE
Confidence 888766443221 2345678889999985 43 344 2344333 3 55679998877
Q ss_pred -c----CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 251 -P----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 251 -~----DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
+ .+.| +....+.++.+++. + ++++.+= .|-...|...++++||+.+
T Consensus 133 ~~~~~~~~~~---~~~~~~~i~~~~~~-~---~~~i~~~----GGI~~~~i~~~~~~Gad~v 183 (202)
T cd04726 133 HRGIDAQAAG---GWWPEDDLKKVKKL-L---GVKVAVA----GGITPDTLPEFKKAGADIV 183 (202)
T ss_pred cCcccccccC---CCCCHHHHHHHHhh-c---CCCEEEE----CCcCHHHHHHHHhcCCCEE
Confidence 3 2332 12234555555543 2 2344443 3555678999999999976
No 66
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.93 E-value=0.025 Score=56.03 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchh--hHHHHHHHHhc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER--DIKTAWEAVKY 171 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~--dI~~a~eal~~ 171 (620)
.++.++-+++++.| +-|++.||+|+|-..+.-.+.++.+++..++. ..++.+--.... +++. ...
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~--------~i~~d~k~~d~~~~~~~~----~~~ 74 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDR--------KVLADLKTMDAGEYEAEQ----AFA 74 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCC--------EEEEEEeeccchHHHHHH----HHH
Confidence 36789999999999 88999999998765555567788887753211 122222111111 2444 344
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec
Q 007056 172 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 172 ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
+|.+.|.+..-+.+ ..+.+.+++++++|+. +...... ..+ ..+.++.+.+.|++.+.+.
T Consensus 75 ~Gad~i~vh~~~~~---------------~~~~~~i~~~~~~g~~-~~~~~~~-~~t----~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGVADD---------------ATIKGAVKAAKKHGKE-VQVDLIN-VKD----KVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEeccCCH---------------HHHHHHHHHHHHcCCE-EEEEecC-CCC----hHHHHHHHHHcCCCEEEEc
Confidence 58887654332221 2345678889999975 4322101 012 2233444567799988774
Q ss_pred -----CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 252 -----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 252 -----DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
++.+...+ +.++.+++.++. .++.+ +-|--.-|.-..+++||+.|-
T Consensus 134 pg~~~~~~~~~~~----~~i~~l~~~~~~---~~i~v----~GGI~~~n~~~~~~~Ga~~v~ 184 (206)
T TIGR03128 134 TGLDEQAKGQNPF----EDLQTILKLVKE---ARVAV----AGGINLDTIPDVIKLGPDIVI 184 (206)
T ss_pred CCcCcccCCCCCH----HHHHHHHHhcCC---CcEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence 22222233 345555655553 22322 245556788888999999764
No 67
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.89 E-value=0.22 Score=48.19 Aligned_cols=180 Identities=14% Similarity=0.086 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccc----hhhHHHHHHHHhc
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN----ERDIKTAWEAVKY 171 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~----~~dI~~a~eal~~ 171 (620)
+.+.-.++++.|.+.|++.|++.. +.++.+.+..... ..+.+++.+-.. .++.-...+..+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~------~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGS------DVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCC------CCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 778889999999999999999964 5566665543220 134455554433 2332222333455
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec
Q 007056 172 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 172 ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
+|++.+.+..+. . .....+.++.++.+.+.++.+ +.++..+.|.-...+ .+++.+.++++.+.+.|++.| .
T Consensus 77 ~Gad~i~v~~~~---~--~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~-~~~~~~~~~~~~~~~~g~~~i--K 147 (201)
T cd00945 77 LGADEIDVVINI---G--SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGL-KTADEIAKAARIAAEAGADFI--K 147 (201)
T ss_pred cCCCEEEEeccH---H--HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCCC-CCHHHHHHHHHHHHHhCCCEE--E
Confidence 699988765442 1 111112566667666666665 446653333322222 478888888888888898865 4
Q ss_pred CCcccc----CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 252 DTVGIT----MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 252 DTvG~~----~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
++.|.. .+..+.++++.+ +. ++++.+-+-.+ ...+...++.+||+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~i~~~~----~~--~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 148 TSTGFGGGGATVEDVKLMKEAV----GG--RVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred eCCCCCCCCCCHHHHHHHHHhc----cc--CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 666643 566666555443 21 13344444333 2567788888898865
No 68
>PRK15108 biotin synthase; Provisional
Probab=96.78 E-value=0.45 Score=51.48 Aligned_cols=220 Identities=14% Similarity=0.075 Sum_probs=136.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh--hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK--EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 171 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~--~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ 171 (620)
.++.++.++.++.+.+.|++.|=+|.-...| .+++.+..+.+.++.. ++ ..+..++-.. +..++.|++
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~-----~i-~v~~s~G~ls----~e~l~~Lke 144 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM-----GL-ETCMTLGTLS----ESQAQRLAN 144 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhC-----CC-EEEEeCCcCC----HHHHHHHHH
Confidence 3899999999999999999999775221122 3456665555544321 22 2222333222 445566788
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC--CcEEe
Q 007056 172 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG--ATTLN 249 (620)
Q Consensus 172 ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG--a~~I~ 249 (620)
+|++++++.+-+++-+-..... ...++.-.+.++.+++.|+. ++.+..-+---.++...+.+..+.+.+ .+.|.
T Consensus 145 AGld~~n~~leT~p~~f~~I~~---~~~~~~rl~~i~~a~~~G~~-v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip 220 (345)
T PRK15108 145 AGLDYYNHNLDTSPEFYGNIIT---TRTYQERLDTLEKVRDAGIK-VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVP 220 (345)
T ss_pred cCCCEEeeccccChHhcCCCCC---CCCHHHHHHHHHHHHHcCCc-eeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEE
Confidence 8999999988887644332211 12456667788999999985 554333333345677888888888883 34443
Q ss_pred e------cCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccc-ccCCc
Q 007056 250 I------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING-IGERA 318 (620)
Q Consensus 250 L------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~G-lGERa 318 (620)
+ +.| ...+.|.+..+.|..+|=-+|+. .+.+..-. ...| --....|+.+||+-+ -+.+ +=...
T Consensus 221 ~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~-~i~i~~g~-~~~~--~~~~~~~l~~Gan~~--~~g~~~ltt~ 294 (345)
T PRK15108 221 INMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTS-YVRLSAGR-EQMN--EQTQAMCFMAGANSI--FYGCKLLTTP 294 (345)
T ss_pred eCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCc-eeeecccH-hHhC--hhhHHHHHHcCCcEE--EECCccccCC
Confidence 2 355 22368899999999999888752 13333222 1111 124689999999998 2222 11233
Q ss_pred CcccHHHHHHHHHhcc
Q 007056 319 GNASLEEVVMAFKCRG 334 (620)
Q Consensus 319 GNa~lEevv~~L~~~~ 334 (620)
| .+.++.+..++..|
T Consensus 295 g-~~~~~~~~~i~~~g 309 (345)
T PRK15108 295 N-PEEDKDLQLFRKLG 309 (345)
T ss_pred C-CCHHHHHHHHHHcC
Confidence 4 67888888888754
No 69
>PRK07094 biotin synthase; Provisional
Probab=96.77 E-value=0.17 Score=53.77 Aligned_cols=196 Identities=21% Similarity=0.138 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe--c-CCCChhH-HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAG--F-PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvG--f-P~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
.++.++.++.++.+.+.|++.|-+. . |....++ .+.++.|.+.. ++...+ ..+... +..++.+
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~--------~l~i~~-~~g~~~----~e~l~~L 135 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKEL--------DVAITL-SLGERS----YEEYKAW 135 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccC--------CceEEE-ecCCCC----HHHHHHH
Confidence 4799999999999999999988774 2 3222222 13334443321 111111 111112 2334567
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHHcCCcEE
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~-r~d~e~l~~~~~~~~~aGa~~I 248 (620)
+.+|.+++.+-+=+.+-....++++. ...+...++++.+++.|+. |..+..-+. .-+.+.+.+.++.+.+.+++.+
T Consensus 136 k~aG~~~v~~glEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~Gi~-v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v 212 (323)
T PRK07094 136 KEAGADRYLLRHETADKELYAKLHPG--MSFENRIACLKDLKELGYE-VGSGFMVGLPGQTLEDLADDILFLKELDLDMI 212 (323)
T ss_pred HHcCCCEEEeccccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCe-ecceEEEECCCCCHHHHHHHHHHHHhCCCCee
Confidence 77899999875554433334445542 2345677889999999985 433222221 4466888899999999998765
Q ss_pred ee------cCCc----cccCHHHHHHHHHHHHHhCCCCCceeE--EEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 249 NI------PDTV----GITMPTEFGKLIADIKANTPGIENVVI--STHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 249 ~L------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i--~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
.+ +.|- ....++++.++++.+|..+|+. +++. ++-++-..| ...++.+||+.+=.++
T Consensus 213 ~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~~~~~~~~~~~~-----~~~~l~~Gan~~~~~~ 281 (323)
T PRK07094 213 GIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDA-NIPATTALGTLNPDG-----REKGLKAGANVVMPNL 281 (323)
T ss_pred eeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCC-CCcccCCccccCchh-----HHHHHHcCCceecCCC
Confidence 43 2221 2356788899999999888853 1322 444443333 2489999998774443
No 70
>PRK05926 hypothetical protein; Provisional
Probab=96.75 E-value=0.075 Score=57.99 Aligned_cols=205 Identities=14% Similarity=0.040 Sum_probs=123.3
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChh-HHHHHHHHHHHhcccccccCCccceEEeecc--------cchhhH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-DFEAVRTIAKEVGNAVDAESGYVPVICGLSR--------CNERDI 162 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r--------~~~~dI 162 (620)
...++.++.++.++.. +.|++.|=+-. +..|. +++.+..+.+.+....++ ..+++++- ......
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~-----i~i~a~s~~Ei~~~~~~~~~~~ 168 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVA-GCFPSCNLAYYEELFSKIKQNFPD-----LHIKALTAIEYAYLSKLDNLPV 168 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCC-----eeEEECCHHHHHHHHhhcCCCH
Confidence 4578999999999998 79999776643 22232 344443333332211111 23444431 111234
Q ss_pred HHHHHHHhcCCCCEEEEE--ecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Q 007056 163 KTAWEAVKYAKRPRIHTF--IATSGIHMEHKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 238 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~--~~~Sd~h~~~~l--~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~ 238 (620)
+..++.|+++|+++++-- -..++.....-. +.+.++ -.++++.|++.|++ ++-+...+.--+++...+.+.
T Consensus 169 ~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e----~l~~i~~a~~~Gi~-~~sgmi~G~gEt~edrv~~l~ 243 (370)
T PRK05926 169 KEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQG----FLEIHKTAHSLGIP-SNATMLCYHRETPEDIVTHMS 243 (370)
T ss_pred HHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCc-ccCceEEeCCCCHHHHHHHHH
Confidence 556778889999886632 111222222111 234443 36789999999986 444433444566788888888
Q ss_pred HHHHcCCcEEee----c------CCc--------cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHH
Q 007056 239 EVIKVGATTLNI----P------DTV--------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 300 (620)
Q Consensus 239 ~~~~aGa~~I~L----~------DTv--------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 300 (620)
.+.+.+.+.+.+ | +|- +..++.+.-++++-.|=-+++++++..+| +.+ |..-+..|+
T Consensus 244 ~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~--G~~~~q~~L 318 (370)
T PRK05926 244 KLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYL--GIEVALHLL 318 (370)
T ss_pred HHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhc--CHHHHHHHH
Confidence 888887654322 1 332 13567777777766665566656677777 333 455678899
Q ss_pred HhcCcEEeecccc
Q 007056 301 CAGARQVEVTING 313 (620)
Q Consensus 301 ~aGA~~Vd~Ti~G 313 (620)
.+||+-+.+|+..
T Consensus 319 ~~GanD~ggt~~~ 331 (370)
T PRK05926 319 SCGANDLSSTHQG 331 (370)
T ss_pred hCCCccCcccccc
Confidence 9999999999975
No 71
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.75 E-value=0.063 Score=55.10 Aligned_cols=175 Identities=22% Similarity=0.292 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-HHHHHHH-----------------HHHHhcccccccCCccceEEeeccc
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-DFEAVRT-----------------IAKEVGNAVDAESGYVPVICGLSRC 157 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d~e~v~~-----------------i~~~~~~~~~~~~~l~~~i~~~~r~ 157 (620)
+.+.-.++++.|.+.|+|.||+|+|.+.|- |-.+++. +.+.+.+.. -.|.+ .++-.
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-----~~pv~-lm~y~ 85 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-----TIPIV-LMGYY 85 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-----CCCEE-EEEec
Confidence 457778999999999999999999876652 2122221 222222110 01311 21211
Q ss_pred c---hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCHHHH
Q 007056 158 N---ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFL 233 (620)
Q Consensus 158 ~---~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f-~~ed~~r~d~e~l 233 (620)
+ ..+++..++.++++|++.+.+. |+|. +...+.++.++++|++.+.+ +| .++.+.+
T Consensus 86 n~~~~~G~~~fi~~~~~aG~~giiip----Dl~~------------ee~~~~~~~~~~~g~~~i~~i~P----~T~~~~i 145 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIP----DLPP------------EEAEEFREAAKEYGLDLIFLVAP----TTPDERI 145 (242)
T ss_pred CHHHHhCHHHHHHHHHHCCCcEEEEC----CCCH------------HHHHHHHHHHHHcCCcEEEEeCC----CCCHHHH
Confidence 2 2345666677777898877653 3332 35668899999999875544 54 3555655
Q ss_pred HHHHHHHHHcC-CcEEeecCCccccC--HHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHH-HHHHHHHhcCcEE
Q 007056 234 YEILGEVIKVG-ATTLNIPDTVGITM--PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA-NTIAGACAGARQV 307 (620)
Q Consensus 234 ~~~~~~~~~aG-a~~I~L~DTvG~~~--P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA-NslaAv~aGA~~V 307 (620)
..+++.. .| +..+...-+.|..+ +..+.+.++.+++.. +++|.+ ++|.-.. |+-..+++ |+.+
T Consensus 146 ~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~----~~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 146 KKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT----DLPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC----CCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 5544321 12 22333345555543 577889999999863 244554 4565544 66666666 7754
No 72
>PLN02389 biotin synthase
Probab=96.75 E-value=0.2 Score=54.95 Aligned_cols=195 Identities=17% Similarity=0.141 Sum_probs=120.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec---CCCC-hhHHHHHHHHHHHhcccccccCCccceEEe-ecccchhhHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGF---PAAS-KEDFEAVRTIAKEVGNAVDAESGYVPVICG-LSRCNERDIKTAWEA 168 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGf---P~~s-~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-~~r~~~~dI~~a~ea 168 (620)
.++.++.++.++.+.+.|++.|-++. .... +.+++.+..+.+.+... + +.++. .+-.. +..++.
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~-----~--l~i~~s~G~l~----~E~l~~ 183 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM-----G--MEVCCTLGMLE----KEQAAQ 183 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC-----C--cEEEECCCCCC----HHHHHH
Confidence 58999999999999999999987641 1122 23566665555544321 1 22332 22122 344566
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHc--CCc
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV--GAT 246 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a--Ga~ 246 (620)
|+++|++++++-+-+++-+... +..+. ..+...+.++.+++.|+. |+.+..-+---+++...+.+..+.+. .++
T Consensus 184 LkeAGld~~~~~LeTs~~~y~~-i~~~~--s~e~rl~ti~~a~~~Gi~-v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~ 259 (379)
T PLN02389 184 LKEAGLTAYNHNLDTSREYYPN-VITTR--SYDDRLETLEAVREAGIS-VCSGGIIGLGEAEEDRVGLLHTLATLPEHPE 259 (379)
T ss_pred HHHcCCCEEEeeecCChHHhCC-cCCCC--CHHHHHHHHHHHHHcCCe-EeEEEEECCCCCHHHHHHHHHHHHhcccCCc
Confidence 7888999999887777633322 22221 355666788999999985 54433323334566777777777777 455
Q ss_pred EEee------cCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 247 TLNI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 247 ~I~L------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+.| +.| ....+|+++.++|...|--+|+.. +.+..-. .-++.-....|+.+||+-+
T Consensus 260 ~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~-i~i~~gr---~~l~~~~~~~~l~~GAN~~ 326 (379)
T PLN02389 260 SVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAM-VRLSAGR---VRFSMAEQALCFLAGANSI 326 (379)
T ss_pred EEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCcc-ccccccc---cccChhHHHHHHHhCCCEE
Confidence 5543 355 235789999999999998887521 2222111 1122334688999999876
No 73
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=96.54 E-value=0.8 Score=47.89 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE---ecCCCChhH-HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEA---GFPAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEv---GfP~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
..+.++.++.++.+.+.|++.+-+ |++.. +.+ .+.++.+.+..... ++.. ....+...+ ..++.+
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~-~~~~~~~~~~i~~~~~~~-----~i~~-~~~~g~~~~----e~l~~L 129 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPK-DREFMEYVEAMVQIVEEM-----GLKT-CATLGLLDP----EQAKRL 129 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC-hHHHHHHHHHHHHHHHhC-----CCeE-EecCCCCCH----HHHHHH
Confidence 466788899999999999987532 44322 222 34555554432110 2211 111222233 334567
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 249 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~ 249 (620)
+++|++.|.+.+-+++-.. .++++. ..++...++++.+++.|+. |.....-+-..+.+.+.+.++.+.+.|++.+.
T Consensus 130 k~aG~~~v~i~~E~~~~~~-~~i~~~--~s~~~~~~ai~~l~~~Gi~-v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~ 205 (296)
T TIGR00433 130 KDAGLDYYNHNLDTSQEFY-SNIIST--HTYDDRVDTLENAKKAGLK-VCSGGIFGLGETVEDRIGLALALANLPPESVP 205 (296)
T ss_pred HHcCCCEEEEcccCCHHHH-hhccCC--CCHHHHHHHHHHHHHcCCE-EEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 7889999888665554322 333322 2456677889999999985 43222111233567788899999999988664
Q ss_pred e------cCCc----cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcC
Q 007056 250 I------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAG 319 (620)
Q Consensus 250 L------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaG 319 (620)
+ +.|- ....++++.+++..++..+|.. .+.++ +=--.-+.---..-|+.+||+.+= ++|+=.-.|
T Consensus 206 l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~-~i~~~--~~~~~~~~~~~~~~~l~~G~n~i~--~g~~~~~~g 280 (296)
T TIGR00433 206 INFLVKIKGTPLADNKELSADDALKTIALARIIMPKA-EIRLA--GGREVNMRELQQAMCFMAGANSIF--VGDYLTTTG 280 (296)
T ss_pred eeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcc-eEEEe--CCcchhhhhhHHHHHHHhcCceEE--EcCcccCCC
Confidence 2 2441 2345678889999999999852 13221 111111121112348999999864 466656778
Q ss_pred cccH-HHHH
Q 007056 320 NASL-EEVV 327 (620)
Q Consensus 320 Na~l-Eevv 327 (620)
+..- |++-
T Consensus 281 ~~~~~~~~~ 289 (296)
T TIGR00433 281 NPEEDKDKK 289 (296)
T ss_pred CCCcHHHHH
Confidence 8877 5543
No 74
>PRK06256 biotin synthase; Validated
Probab=96.49 E-value=0.42 Score=51.18 Aligned_cols=211 Identities=18% Similarity=0.131 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE---ecCCCChhHHHHHHHHHHHhcccccccCCccceEEe-ecccchhhHHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEA---GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-LSRCNERDIKTAWEAV 169 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEv---GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-~~r~~~~dI~~a~eal 169 (620)
.++.++.++.++.+.+.|+..+-+ |++. ...+.+.+..+.+.+... . .+ .+++ .+...++ .++.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p-~~~~~~~~~e~i~~i~~~-~---~i--~~~~~~g~l~~e----~l~~L 158 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGP-SGKEVDQVVEAVKAIKEE-T---DL--EICACLGLLTEE----QAERL 158 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCC-CchHHHHHHHHHHHHHhc-C---CC--cEEecCCcCCHH----HHHHH
Confidence 479999999999999999976654 3311 112333333333332211 1 11 2222 2222333 34556
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 249 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~ 249 (620)
+++|++++++.+-+|+-. ..+++.+. ..+...++++.+++.|+. ++.+..-+..-+.+...+.++.+.+.+++.+.
T Consensus 159 keaG~~~v~~~lEts~~~-~~~i~~~~--t~~~~i~~i~~a~~~Gi~-v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~ 234 (336)
T PRK06256 159 KEAGVDRYNHNLETSRSY-FPNVVTTH--TYEDRIDTCEMVKAAGIE-PCSGGIIGMGESLEDRVEHAFFLKELDADSIP 234 (336)
T ss_pred HHhCCCEEecCCccCHHH-HhhcCCCC--CHHHHHHHHHHHHHcCCe-eccCeEEeCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 778999998865556543 34455432 356677889999999985 54333222245677788889999999988665
Q ss_pred e------cCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHH-HHHHHhcCcEEeeccccccCCc
Q 007056 250 I------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT-IAGACAGARQVEVTINGIGERA 318 (620)
Q Consensus 250 L------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANs-laAv~aGA~~Vd~Ti~GlGERa 318 (620)
+ +.| .....|.++.+++..+|-.+|+. .+.+. ++--. .+.+. .+++ +||+.+= ++++=...
T Consensus 235 i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~-~I~~~--~gr~~--~~~~~~~~~~-~g~~~~~--~g~~lt~~ 306 (336)
T PRK06256 235 INFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDK-EIRIA--GGREV--NLRSLQPLGL-GGANSVI--VGNYLTTV 306 (336)
T ss_pred ecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-eeEec--Cchhh--hchhhHHHHh-ccCceee--ECCcccCC
Confidence 4 444 23467899999999999888864 24444 32211 11122 2233 6876641 12222345
Q ss_pred CcccHHHHH
Q 007056 319 GNASLEEVV 327 (620)
Q Consensus 319 GNa~lEevv 327 (620)
|+..-+++-
T Consensus 307 g~~~~~d~~ 315 (336)
T PRK06256 307 GQPATADLD 315 (336)
T ss_pred CCChHHHHH
Confidence 666555544
No 75
>PRK05927 hypothetical protein; Provisional
Probab=96.40 E-value=0.13 Score=55.83 Aligned_cols=239 Identities=15% Similarity=0.102 Sum_probs=128.1
Q ss_pred CCcccCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHH----HHHHHHHHhcccccccCCcc-ceEEeecc
Q 007056 83 TLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFE----AVRTIAKEVGNAVDAESGYV-PVICGLSR 156 (620)
Q Consensus 83 TLRDG~Qs~-g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e----~v~~i~~~~~~~~~~~~~l~-~~i~~~~r 156 (620)
..|...+.+ ...++.++.++.++...+.|+..|=+........+++ .++.|.+..+. +.-. .+. ..|.-+++
T Consensus 63 af~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~-l~~~-~~s~~ei~~~~~ 140 (350)
T PRK05927 63 AFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPS-LHPH-FFSAVEIAHAAQ 140 (350)
T ss_pred CccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCC-Cccc-CCCHHHHHHHHH
Confidence 444444433 3479999999999999999999877643211112344 44444443211 0000 110 11111111
Q ss_pred cchhhHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHhC--C-CHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH
Q 007056 157 CNERDIKTAWEAVKYAKRPRIHT-FIATSGIHMEHKLR--K-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKF 232 (620)
Q Consensus 157 ~~~~dI~~a~eal~~ag~~~v~i-~~~~Sd~h~~~~l~--~-t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~ 232 (620)
..-.-.+..++.|+++|++.++= -.=+++-+...++. + +.++- .+.++.|+++|++ ++-+...+.--+++.
T Consensus 141 ~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~r----l~~i~~A~~lGi~-~~sg~l~G~gEt~e~ 215 (350)
T PRK05927 141 VSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGW----IQFHKLAHRLGFR-STATMMFGHVESPED 215 (350)
T ss_pred hcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHH----HHHHHHHHHcCCC-cCceeEEeeCCCHHH
Confidence 11122345567788889875541 12223333333332 2 34444 3578999999986 322222222344555
Q ss_pred HHHHHHHHHHcCCc--EEe--ec------CCc---c---ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHH
Q 007056 233 LYEILGEVIKVGAT--TLN--IP------DTV---G---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT 296 (620)
Q Consensus 233 l~~~~~~~~~aGa~--~I~--L~------DTv---G---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANs 296 (620)
..+.+..+.+.+-+ .|. || +|- . ..+|.++-++++..|--+|+...+. . .-..+|.--+
T Consensus 216 ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~i~----~-~w~~~G~~~~ 290 (350)
T PRK05927 216 ILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDHIA----A-SWFGEGKEEG 290 (350)
T ss_pred HHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCccc----C-CccccCHHHH
Confidence 55666666555421 111 34 452 1 4889999999998888787533111 1 2233555667
Q ss_pred HHHHHhcCcEEeecccc------ccCCcCcccHHHHHHHHHhcc
Q 007056 297 IAGACAGARQVEVTING------IGERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 297 laAv~aGA~~Vd~Ti~G------lGERaGNa~lEevv~~L~~~~ 334 (620)
..|+.+||+-+.+|+.. -|...| .+++++...++..|
T Consensus 291 q~~L~~GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G 333 (350)
T PRK05927 291 AKGLHYGADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEG 333 (350)
T ss_pred HHHHhCCCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcC
Confidence 78999999999988742 122222 24566666655543
No 76
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.37 E-value=0.29 Score=49.42 Aligned_cols=156 Identities=20% Similarity=0.234 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 175 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~ 175 (620)
+.++-+.+++.|.+.|++.||+.| .+|.-.+.++.+++..+.. ++ ..+-+=+-.+.++.+.+.++ |.+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~--~~~~a~~~i~~l~~~~~~~--p~----~~vGaGTV~~~~~~~~a~~a----GA~ 90 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTY--TNPFASEVIKELVELYKDD--PE----VLIGAGTVLDAVTARLAILA----GAQ 90 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC--CCccHHHHHHHHHHHcCCC--CC----eEEeeeeCCCHHHHHHHHHc----CCC
Confidence 889999999999999999999988 3677778888888754210 00 12323333567788877765 766
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee--cCC
Q 007056 176 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PDT 253 (620)
Q Consensus 176 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L--~DT 253 (620)
-+- .|..+ .+.++++++.|+. +-| + -.++..+. .+.++|+|.|.+ +|.
T Consensus 91 Fiv--sP~~~------------------~~v~~~~~~~~i~---~iP--G-~~T~~E~~----~A~~~Gad~vklFPa~~ 140 (213)
T PRK06552 91 FIV--SPSFN------------------RETAKICNLYQIP---YLP--G-CMTVTEIV----TALEAGSEIVKLFPGST 140 (213)
T ss_pred EEE--CCCCC------------------HHHHHHHHHcCCC---EEC--C-cCCHHHHH----HHHHcCCCEEEECCccc
Confidence 432 23221 2678889999875 222 1 23334332 345799999998 454
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 254 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 254 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.| |. .++.++..+|+ +++. -.-|.-..|.-.-+.+|++.+
T Consensus 141 ~G---~~----~ik~l~~~~p~---ip~~----atGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 141 LG---PS----FIKAIKGPLPQ---VNVM----VTGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred CC---HH----HHHHHhhhCCC---CEEE----EECCCCHHHHHHHHHCCCcEE
Confidence 44 44 36666777775 3443 235777899999999999876
No 77
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.10 E-value=0.43 Score=49.48 Aligned_cols=202 Identities=15% Similarity=0.105 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCC---------CChhHHHHHHHHHHHhcccccccCCccceEEe-------eccc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPA---------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-------LSRC 157 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~---------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-------~~r~ 157 (620)
.++.++.++.+ .++|++.||+..+. .++.+.+.++.+.+..+-. ++.++. ++..
T Consensus 20 ~~~~~e~~~~~---~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~-------i~~~~~~~~~~~~~~~~ 89 (283)
T PRK13209 20 GECWLEKLAIA---KTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFR-------VNSMCLSAHRRFPLGSE 89 (283)
T ss_pred CCCHHHHHHHH---HHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCc-------eeEEecccccccCCCCC
Confidence 45777766554 57899999996432 1455566666666543221 111211 1111
Q ss_pred c-------hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCC
Q 007056 158 N-------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSD 229 (620)
Q Consensus 158 ~-------~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-d~~r~d 229 (620)
. .+.++++++..+..|.+.|.+........ .......+...+.+.+++++|+++|+. +.+-+. ...-.+
T Consensus 90 ~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~~~~~ 166 (283)
T PRK13209 90 DDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYE--QANNETRRRFIDGLKESVELASRASVT-LAFEIMDTPFMNS 166 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccc--ccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeecCCcccCC
Confidence 1 12345566666677888876532110000 000112234466778888899999974 555332 223345
Q ss_pred HHHHHHHHHHHHHcCCcEEeec-CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 230 RKFLYEILGEVIKVGATTLNIP-DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
++.+.++++.+ +-..+.++ |+.=...-. .+....++. .. +-...+|.+|..+- +-+.
T Consensus 167 ~~~~~~ll~~v---~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~---~~i~~vHikD~~~~-----------~~~~-- 224 (283)
T PRK13209 167 ISKALGYAHYL---NSPWFQLYPDIGNLSAWD--NDVQMELQA-GI---GHIVAFHVKDTKPG-----------VFKN-- 224 (283)
T ss_pred HHHHHHHHHHh---CCCccceEeccchHHHhc--CCHHHHHHh-Cc---CcEEEEEeccCCCC-----------CCce--
Confidence 66666666543 44445443 543211100 012223332 22 24578999986431 1111
Q ss_pred eccccccCCcCcccHHHHHHHHHhccc
Q 007056 309 VTINGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 309 ~Ti~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
..+|+ |+.+...++..|+..++
T Consensus 225 ---~~~G~--G~id~~~i~~~L~~~gy 246 (283)
T PRK13209 225 ---VPFGE--GVVDFERCFKTLKQSGY 246 (283)
T ss_pred ---eCCCC--CccCHHHHHHHHHHcCC
Confidence 23454 88999999999998764
No 78
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=96.06 E-value=1.6 Score=49.10 Aligned_cols=205 Identities=17% Similarity=0.237 Sum_probs=115.0
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH--HHHHHHHHHHhcccccccCCccceEE-eecccchhhHHHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED--FEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTA 165 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a 165 (620)
...++.++.++-++.+.+.|++.|=+-. |...+-| .+.++.|.+.... .+....+. -.+....++
T Consensus 112 r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~-----~g~i~~v~inig~lt~ee---- 182 (469)
T PRK09613 112 RKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHG-----NGEIRRVNVNIAPTTVEN---- 182 (469)
T ss_pred ceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccc-----cCcceeeEEEeecCCHHH----
Confidence 3578999999999999999999876632 3222222 1344444432100 02111111 123334333
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCEEE----EcCCCCCCCCHHHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVE----FSPEDAGRSDRKFLYEILGEV 240 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~-t~ee~l~~~~~~v~~a~~~G~~~V~----f~~ed~~r~d~e~l~~~~~~~ 240 (620)
++.|+.+|++++++|-=|.+--.-.++.. .+....+.-.++++.|++.|++.|. |+.. .++.| ...++..+
T Consensus 183 y~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLg-e~~~E---~~~l~~hl 258 (469)
T PRK09613 183 YKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLY-DYKFE---VLGLLMHA 258 (469)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCC-CCHHH---HHHHHHHH
Confidence 34577789999999987754222223311 1122344455788999999997454 4442 22332 22333333
Q ss_pred HH------cCCcEEeec------CC-c----cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhc
Q 007056 241 IK------VGATTLNIP------DT-V----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 303 (620)
Q Consensus 241 ~~------aGa~~I~L~------DT-v----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 303 (620)
.. .|++.|.+| +| . -...++++.++|..+|=.+|.. .+.|+ ++-.-. +=+ ..+..|
T Consensus 259 ~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~-~I~lS--tRE~~~--~r~--~~~~~g 331 (469)
T PRK09613 259 EHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYT-GMILS--TRESAE--LRR--EVLELG 331 (469)
T ss_pred HHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCC-Cceee--cCCCHH--HHH--HHHhhc
Confidence 22 367777765 54 2 2357789999999999888854 24555 444422 222 345569
Q ss_pred CcEEe----eccccccC
Q 007056 304 ARQVE----VTINGIGE 316 (620)
Q Consensus 304 A~~Vd----~Ti~GlGE 316 (620)
+++++ +.++|..+
T Consensus 332 vt~~sags~t~~ggy~~ 348 (469)
T PRK09613 332 VSQISAGSRTGVGGYSE 348 (469)
T ss_pred ceeecccccCCCCCcCC
Confidence 99985 44555554
No 79
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=96.03 E-value=1.1 Score=48.86 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--e-cCCCChhH--HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEA--G-FPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEv--G-fP~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
..++.++.++.++.+.+.|+..|=+ | .|...+-+ .+.++.|.+..+. ....++ ....++ ++
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~-------i~Iei~---~lt~e~----~~ 166 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSS-------LAIEVQ---PLNEEE----YK 166 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCc-------cccccc---cCCHHH----HH
Confidence 4589999999999999999997754 3 24322212 2444555443110 111222 123333 35
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCC-
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA- 245 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~-~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa- 245 (620)
.|+.+|+++++++.=+++--.-.++. ..+....+...++++.|++.|+..|+.+..-+-.-......+++..+...++
T Consensus 167 ~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~ 246 (366)
T TIGR02351 167 KLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKK 246 (366)
T ss_pred HHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHH
Confidence 67788999999998886433333332 1112234556678999999998644433221111123333344444333332
Q ss_pred -----cEEe---ec------CCccccCHHHHHHHHHHHHHhCCCCCceeEE
Q 007056 246 -----TTLN---IP------DTVGITMPTEFGKLIADIKANTPGIENVVIS 282 (620)
Q Consensus 246 -----~~I~---L~------DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~ 282 (620)
..|. |- ......+|.++.++|..+|--+|... +.|+
T Consensus 247 ~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~-i~~s 296 (366)
T TIGR02351 247 YWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVE-ISLS 296 (366)
T ss_pred cCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccc-cEEe
Confidence 2222 22 22345679999999999999888643 4443
No 80
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=96.02 E-value=1 Score=48.51 Aligned_cols=141 Identities=19% Similarity=0.194 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
..|+.++..++++.+.++|+..|-+ |=|-..|+=.+.++.+.+. ++...+..-+-... +..++.++
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~---------g~~~~l~TNG~ll~---~e~~~~L~ 102 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRL---------GLYTNLITSGVGLT---EARLDALA 102 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHc---------CCeEEEEeCCccCC---HHHHHHHH
Confidence 3589999999999999999988777 3476666434555554432 22222322221111 22345566
Q ss_pred cCCCCEEEEEecCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 171 YAKRPRIHTFIATS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 171 ~ag~~~v~i~~~~S--d~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
+.|.+.|.+.+-.. +.|.. ++.. ....+.+.+.++.+++.|+. |.+... .++.+.+.+.++++.+.+.|++.+
T Consensus 103 ~~g~~~v~iSldg~~~e~~d~--~rg~-~g~f~~v~~~i~~l~~~g~~-v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i 177 (358)
T TIGR02109 103 DAGLDHVQLSFQGVDEALADR--IAGY-KNAFEQKLAMARAVKAAGLP-LTLNFV-IHRHNIDQIPEIIELAIELGADRV 177 (358)
T ss_pred hCCCCEEEEeCcCCCHHHHHH--hcCC-ccHHHHHHHHHHHHHhCCCc-eEEEEE-eccCCHHHHHHHHHHHHHcCCCEE
Confidence 67888888766544 34433 3321 23577788899999999985 555432 457788999999999999999987
Q ss_pred ee
Q 007056 249 NI 250 (620)
Q Consensus 249 ~L 250 (620)
.+
T Consensus 178 ~~ 179 (358)
T TIGR02109 178 EL 179 (358)
T ss_pred EE
Confidence 76
No 81
>PRK08508 biotin synthase; Provisional
Probab=95.79 E-value=0.82 Score=47.91 Aligned_cols=196 Identities=14% Similarity=0.024 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEE-eecccchhhHHHHHHHHhc
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWEAVKY 171 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~eal~~ 171 (620)
+++|+.++.++...+.|+..|-+ +.+..++.+++.+..+.+.+....+ + ..++ ..++.. +..++.|++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p---~--l~i~~s~G~~~----~e~l~~Lk~ 110 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP---G--LHLIACNGTAS----VEQLKELKK 110 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCC---C--cEEEecCCCCC----HHHHHHHHH
Confidence 79999999999999999988764 2222233456666555554432211 1 1222 334444 334566778
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee-
Q 007056 172 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI- 250 (620)
Q Consensus 172 ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L- 250 (620)
+|+++++.-+-+++-+... ...+ ..++...+.++.|++.|++ ++-....+---+++.+.+.+..+.+.+++.|-+
T Consensus 111 aGld~~~~~lEt~~~~~~~-i~~~--~~~~~~l~~i~~a~~~Gi~-v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~ 186 (279)
T PRK08508 111 AGIFSYNHNLETSKEFFPK-ICTT--HTWEERFQTCENAKEAGLG-LCSGGIFGLGESWEDRISFLKSLASLSPHSTPIN 186 (279)
T ss_pred cCCCEEcccccchHHHhcC-CCCC--CCHHHHHHHHHHHHHcCCe-ecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeC
Confidence 8999999887777644322 2222 2245566678889999985 433332333456788889999999999884322
Q ss_pred -----cCCc---cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 251 -----PDTV---GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 251 -----~DTv---G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
+.|- ..++|+++-++++..|-.+|+. .+.+.-=--..+|- .-..++.+||+.+
T Consensus 187 ~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~-~i~~~~gr~~~~~~---~~~~~~~~g~n~~ 247 (279)
T PRK08508 187 FFIPNPALPLKAPTLSADEALEIVRLAKEALPNA-RLMVAGGREVVFGE---RQYEIFEAGANAI 247 (279)
T ss_pred CcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCc-eeeecCChhhhchh---hHHHHHhcCCcce
Confidence 2331 2368999999999988888854 24443200000111 2356788888763
No 82
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=95.76 E-value=0.45 Score=50.91 Aligned_cols=222 Identities=15% Similarity=0.087 Sum_probs=120.2
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec---CCCChhH-------------HHHHHHHHHHhcccccccCCccceEEeec
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED-------------FEAVRTIAKEVGNAVDAESGYVPVICGLS 155 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf---P~~s~~d-------------~e~v~~i~~~~~~~~~~~~~l~~~i~~~~ 155 (620)
...++.++.++.++.+.+.|++.|-+-+ |...-.+ .+.+..+.+.+... .++.+.+ ...
T Consensus 32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e----~~~~~~~-~~g 106 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEE----TGLLPHT-NPG 106 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----cCCcccc-CCC
Confidence 4578999999999999999999876632 3221001 13333333322110 0111111 111
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHH----HHh--CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC
Q 007056 156 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHME----HKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSD 229 (620)
Q Consensus 156 r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~----~~l--~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d 229 (620)
-..+ ..++.++.+|+. +++..-++.-.+. +.. +++.+ .-.+.++.|++.|+. ++.+...+.--+
T Consensus 107 ~lt~----e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~----~~l~~i~~a~~~Gi~-~~s~~i~G~gEt 176 (322)
T TIGR03550 107 VMSR----DELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPA----VRLETIEDAGRLKIP-FTTGILIGIGET 176 (322)
T ss_pred CCCH----HHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHH----HHHHHHHHHHHcCCC-ccceeeEeCCCC
Confidence 1122 234455666754 3444333222211 111 22333 346889999999986 433222222234
Q ss_pred HHHHHHHHHHHHHcC-----CcEEee------cCCc----cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHH
Q 007056 230 RKFLYEILGEVIKVG-----ATTLNI------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 294 (620)
Q Consensus 230 ~e~l~~~~~~~~~aG-----a~~I~L------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA 294 (620)
++...+.+..+.+.+ ++.+.+ +.|- ...+|.+..++|+..|=-+|+..++..+++ +|.-
T Consensus 177 ~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~~----l~~~-- 250 (322)
T TIGR03550 177 REERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPPN----LNRE-- 250 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCCc----cChH--
Confidence 566666666655543 432221 2442 346788888988888877865445666652 2311
Q ss_pred HHHHHHHhcCcEEeeccc--c-ccCCcCc-ccHHHHHHHHHhcc
Q 007056 295 NTIAGACAGARQVEVTIN--G-IGERAGN-ASLEEVVMAFKCRG 334 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti~--G-lGERaGN-a~lEevv~~L~~~~ 334 (620)
-...|+.+||+-+++|+. | .|...|. .+.++++..++..|
T Consensus 251 ~~~~~L~~Gand~~gt~~~~~~~~~~~~~~~~~~~~~~~i~~~g 294 (322)
T TIGR03550 251 DYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAG 294 (322)
T ss_pred HHHHHHhcCCccccCcccCchhhcCCCCCCCCHHHHHHHHHHcC
Confidence 367899999999999964 2 2222232 36788888887644
No 83
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=95.75 E-value=0.56 Score=51.21 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEe--c-CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAG--F-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvG--f-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
..++.++.++.++.+.+.|++.|-+- - |.. .+++.+..+.+.+....++ . .+... ....+ .++.|
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~--~~~e~l~~~i~~Ik~~~p~---i--~i~~g-~lt~e----~l~~L 169 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK--VGVDYIRRALPIAREYFSS---V--SIEVQ-PLSEE----EYAEL 169 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC--CCHHHHHHHHHHHHHhCCC---c--eeccC-CCCHH----HHHHH
Confidence 57899999999999999999988663 2 322 2333333333322211110 0 11111 11222 34667
Q ss_pred hcCCCCEEEEEecCC-HHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc-
Q 007056 170 KYAKRPRIHTFIATS-GIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT- 246 (620)
Q Consensus 170 ~~ag~~~v~i~~~~S-d~h~~~~l~~-t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~- 246 (620)
+.+|++++++..=++ +-+- .++.. .+....+...++++.|++.|+..|+.+..-+-.-..+...+++..+...+..
T Consensus 170 k~aGv~r~~i~lET~~~~~~-~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~ 248 (371)
T PRK09240 170 VELGLDGVTVYQETYNPATY-AKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKY 248 (371)
T ss_pred HHcCCCEEEEEEecCCHHHH-HHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhC
Confidence 888999999998885 5443 33321 1112244556688999999985455433322222445566666655555432
Q ss_pred -----EEe---ecCCcc------ccCHHHHHHHHHHHHHhCCCC
Q 007056 247 -----TLN---IPDTVG------ITMPTEFGKLIADIKANTPGI 276 (620)
Q Consensus 247 -----~I~---L~DTvG------~~~P~~v~~li~~l~~~~~~~ 276 (620)
.|. |-..-| .++|.++-++|..+|--+|..
T Consensus 249 ~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~ 292 (371)
T PRK09240 249 WQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDV 292 (371)
T ss_pred CCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCccc
Confidence 343 333333 258899999999999888854
No 84
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=95.74 E-value=0.46 Score=49.00 Aligned_cols=195 Identities=18% Similarity=0.156 Sum_probs=100.9
Q ss_pred HHHHHHHHhHcCCCEEEEec--CC-----CChhHHHHHHHHHHHhcccccccCCccceEEeec-----------ccch--
Q 007056 100 KLDIARQLAKLGVDIIEAGF--PA-----ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS-----------RCNE-- 159 (620)
Q Consensus 100 Kl~Ia~~L~~~Gvd~IEvGf--P~-----~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~-----------r~~~-- 159 (620)
-.+.++.+.++|++.||+.. |. ....+.+.++++.+..+-. +.+++ ...+
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~----------v~s~~~~~~~~~~~~~~~~~~~ 84 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMP----------IIGYTPETNGYPYNMMLGDEHM 84 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCe----------EEEecCcccCcCccccCCCHHH
Confidence 34556667788999999952 21 1223445555555443221 11211 0111
Q ss_pred -----hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC--C--CCCCCH
Q 007056 160 -----RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE--D--AGRSDR 230 (620)
Q Consensus 160 -----~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e--d--~~r~d~ 230 (620)
+.++..++..+..|.+.|.++....... .......+...+.+.+++++|++.|+. +.+-+. . ..-.++
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~~~~~~~~~~t~ 161 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHAGYL--TPPNVIWGRLAENLSELCEYAENIGMD-LILEPLTPYESNVVCNA 161 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCCCCcccccCCH
Confidence 2334445555566888876643211000 000112345666777888889999974 555321 1 112345
Q ss_pred HHHHHHHHHHHHcCC-cEEeecCCccc-cCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 231 KFLYEILGEVIKVGA-TTLNIPDTVGI-TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 231 e~l~~~~~~~~~aGa-~~I~L~DTvG~-~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
+.+.++++.+ +- ..-.+.|+.=. ....++.+.++.+ ++ -...+|++|..+- . +
T Consensus 162 ~~~~~l~~~~---~~~~v~~~~D~~h~~~~~~~~~~~i~~~----~~---rI~~vHi~D~~~~-------------~--~ 216 (275)
T PRK09856 162 NDVLHALALV---PSPRLFSMVDICAPYVQAEPVMSYFDKL----GD---KLRHLHIVDSDGA-------------S--D 216 (275)
T ss_pred HHHHHHHHHc---CCCcceeEEeecchhcCCCCHHHHHHHh----CC---cEEEEEEEcCCCC-------------C--C
Confidence 6666666543 42 22234577432 1222333333332 32 3578999997652 0 1
Q ss_pred eccccccCCcCcccHHHHHHHHHhccc
Q 007056 309 VTINGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 309 ~Ti~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
.-.-.|+ |+.+..+++..|+..|+
T Consensus 217 -~~~~pG~--G~id~~~i~~~L~~~gy 240 (275)
T PRK09856 217 -THYIPGE--GKMPLRELMRDIIDRGY 240 (275)
T ss_pred -CCcCCCC--CCCCHHHHHHHHHHcCC
Confidence 1113344 89999999999998764
No 85
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.72 E-value=1.4 Score=43.33 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHHHHHHHHHHHhcccccccCCccceEE-eecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~e 167 (620)
.+..+.-.+.++.+.+.|+|.||++ |-...+-.++.++++.+.... +..+ .+.+. .+.-++
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~---------~v~v~lm~~~----~~~~~~ 73 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDL---------PIDVHLMVEN----PDRYIE 73 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCC---------cEEEEeeeCC----HHHHHH
Confidence 3455666789999999999999997 422333456778887763211 1112 22222 223344
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCHHHHHHHHHHHHHcCCc
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~ed~~r~d~e~l~~~~~~~~~aGa~ 246 (620)
.++.+|.+.|.+....+ +...+.++.++.+|... +.+++ .++.+.+.++ ..+++
T Consensus 74 ~~~~~gadgv~vh~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~----~t~~e~~~~~-----~~~~d 128 (210)
T TIGR01163 74 DFAEAGADIITVHPEAS----------------EHIHRLLQLIKDLGAKAGIVLNP----ATPLEFLEYV-----LPDVD 128 (210)
T ss_pred HHHHcCCCEEEEccCCc----------------hhHHHHHHHHHHcCCcEEEEECC----CCCHHHHHHH-----HhhCC
Confidence 45567999876633211 12345668888888752 22233 2344444333 23567
Q ss_pred EEee----cCCccccCHHHHHHHHHHHHHhCCCC-CceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 247 TLNI----PDTVGITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 247 ~I~L----~DTvG~~~P~~v~~li~~l~~~~~~~-~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+.+ +-+.|...++..-+.++.+++..+.. ..+++.+ +.|.-..|.-..++.||+.|
T Consensus 129 ~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v----~GGI~~env~~l~~~gad~i 190 (210)
T TIGR01163 129 LVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEV----DGGVNDDNARELAEAGADIL 190 (210)
T ss_pred EEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHcCCCEE
Confidence 7665 44445333344445666666543210 0133433 35777888888899999976
No 86
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.71 E-value=0.85 Score=47.14 Aligned_cols=185 Identities=15% Similarity=0.195 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 166 (620)
.=|.++-+++|+.+.++|+.++=.|. |.+||..| +.++.|.+..... |+ +.+. .-....+++.+.
T Consensus 25 vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~-----Gl-~~~T--ev~d~~~v~~~~ 96 (250)
T PRK13397 25 IESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEF-----GL-LSVS--EIMSERQLEEAY 96 (250)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHc-----CC-CEEE--eeCCHHHHHHHH
Confidence 44789999999999999999999985 77777543 3444444421111 22 1221 112444555443
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~ 246 (620)
+ .++.+.| ++.+... .+.++++.+.|.. |.++- +...+++.+...++.+.+.|..
T Consensus 97 e-----~vdilqI--gs~~~~n---------------~~LL~~va~tgkP-Vilk~--G~~~t~~e~~~A~e~i~~~Gn~ 151 (250)
T PRK13397 97 D-----YLDVIQV--GARNMQN---------------FEFLKTLSHIDKP-ILFKR--GLMATIEEYLGALSYLQDTGKS 151 (250)
T ss_pred h-----cCCEEEE--CcccccC---------------HHHHHHHHccCCe-EEEeC--CCCCCHHHHHHHHHHHHHcCCC
Confidence 3 3666655 3322111 2455666667764 76643 3357788888899999999998
Q ss_pred EEeecC--CccccCHHH-HH--HHHHHHHHhCCCCCceeEEE-ecCCCcchHHHHHHHHHHhcCc--EEeecccc
Q 007056 247 TLNIPD--TVGITMPTE-FG--KLIADIKANTPGIENVVIST-HCQNDLGLSTANTIAGACAGAR--QVEVTING 313 (620)
Q Consensus 247 ~I~L~D--TvG~~~P~~-v~--~li~~l~~~~~~~~~v~i~~-H~HND~GlAvANslaAv~aGA~--~Vd~Ti~G 313 (620)
.|.||- |.|+-+|.+ .- .-|..+++.+. . .+.++. |.=-.+-+-.+-+++|+.+||+ .|+.-.+.
T Consensus 152 ~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~-l-PVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P 224 (250)
T PRK13397 152 NIILCERGVRGYDVETRNMLDIMAVPIIQQKTD-L-PIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDP 224 (250)
T ss_pred eEEEEccccCCCCCccccccCHHHHHHHHHHhC-C-CeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCc
Confidence 899996 555554433 22 34566776552 1 122322 5433333455779999999999 88776664
No 87
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=95.70 E-value=1.6 Score=46.76 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe--c-CCCC-------------hhHHHHHHHHHHHhcccccccCCccceEEeeccc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAG--F-PAAS-------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC 157 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvG--f-P~~s-------------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 157 (620)
.+++++.++.++.+.+.|+++|-+- - |... ++-.+.++.+++..... ++.+.+.. .-.
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~-----g~~~~~~~-~~l 113 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEE-----GLLPHTNA-GIL 113 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhc-----CCCccccC-CCC
Confidence 7999999999999999999987763 2 3322 11134455554432110 22221111 111
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH
Q 007056 158 NERDIKTAWEAVKYAKRPRIHTFI-ATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 158 ~~~dI~~a~eal~~ag~~~v~i~~-~~Sd~h~~~~l~~-t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~ 235 (620)
.++.++ .++.+++. +++.. +.++...+ .++. .+....+...+.++.+++.|+. +..+...+.--+.+...+
T Consensus 114 t~e~i~----~Lk~ag~~-l~~~~et~~e~l~~-~v~~~~~~~~~~~~l~~i~~a~~~Gi~-~~~~~i~G~gEt~ed~~~ 186 (336)
T PRK06245 114 TREEME----KLKEVNAS-MGLMLEQTSPRLLN-TVHRGSPGKDPELRLETIENAGKLKIP-FTTGILIGIGETWEDRAE 186 (336)
T ss_pred CHHHHH----HHHHhCCC-CCCCccccchhhHH-hhccCCCCCCHHHHHHHHHHHHHcCCc-eeeeeeeECCCCHHHHHH
Confidence 233333 34444432 34432 23343332 1211 1111233457788999999986 332221111123344444
Q ss_pred HHHHHHHc-----CCcEEee------cCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHH
Q 007056 236 ILGEVIKV-----GATTLNI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 300 (620)
Q Consensus 236 ~~~~~~~a-----Ga~~I~L------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv 300 (620)
.++.+.+. |.+.+.+ +.| .....++++.++++..|..+|+ .+.|..-. .+|.- =...++
T Consensus 187 ~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~--~i~i~~~~--~~~~~--~~~~~L 260 (336)
T PRK06245 187 SLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP--DISIQVPP--NLNRD--TGLLLL 260 (336)
T ss_pred HHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC--CceEecCC--ccchH--HHHHHH
Confidence 33333333 2333331 133 2245678999999999988864 23333221 34443 344669
Q ss_pred HhcCcEEeeccccccC---CcC-cccHHHHHHHHHhcc
Q 007056 301 CAGARQVEVTINGIGE---RAG-NASLEEVVMAFKCRG 334 (620)
Q Consensus 301 ~aGA~~Vd~Ti~GlGE---RaG-Na~lEevv~~L~~~~ 334 (620)
.+||+-+.+|+..-|+ ..+ ..++++++..++..|
T Consensus 261 ~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 298 (336)
T PRK06245 261 DAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAG 298 (336)
T ss_pred hcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcC
Confidence 9999999999886555 211 246788887777654
No 88
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=95.66 E-value=0.81 Score=49.80 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
..|+.++.+++++.+.+.|+..|.+ |=|-..++-.+.++.+.+. ++...+..-+-... +..++.++
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~---------g~~~~i~TNG~ll~---~~~~~~L~ 111 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHAREL---------GLYTNLITSGVGLT---EARLAALK 111 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHc---------CCcEEEECCCccCC---HHHHHHHH
Confidence 4689999999999999999987766 3466555434455554432 22222322111111 12245566
Q ss_pred cCCCCEEEEEecCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 171 YAKRPRIHTFIATS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 171 ~ag~~~v~i~~~~S--d~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
..|.+.|.+.+-.. +.|- .++.. ....+.+.+.++.+++.|+. |.+.. -.++.+.+.+.++++.+.+.|++.+
T Consensus 112 ~~g~~~v~iSldg~~~e~~d--~irg~-~g~f~~~~~~i~~l~~~g~~-v~i~~-vv~~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 112 DAGLDHIQLSFQDSDPELND--RLAGT-KGAFAKKLAVARLVKAHGYP-LTLNA-VIHRHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred HcCCCEEEEEecCCCHHHHH--HHcCC-CchHHHHHHHHHHHHHCCCc-eEEEE-EeecCCHHHHHHHHHHHHHcCCCEE
Confidence 67888888876654 3443 23221 12456677788999999986 55543 2457788999999999999999988
Q ss_pred eec
Q 007056 249 NIP 251 (620)
Q Consensus 249 ~L~ 251 (620)
.+.
T Consensus 187 ~~~ 189 (378)
T PRK05301 187 ELA 189 (378)
T ss_pred EEe
Confidence 764
No 89
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=95.55 E-value=0.44 Score=51.03 Aligned_cols=141 Identities=15% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCc-cceEEeecccchhhHHHHHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~eal 169 (620)
..|+.++..++++.+.+.|++.|-+ |=|-..++-.+.++.+.+.. ++ ...+.. +-..+...++.+
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~--------~l~~i~itT----NG~ll~~~~~~L 110 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLP--------GLEELSLTT----NGSRLARFAAEL 110 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCC--------CCceEEEEe----ChhHHHHHHHHH
Confidence 3589999999999999999999888 44765554446666665421 11 112222 222233445667
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
+.+|+++|.+.+-+.+-....+++. ...++.+.+.++.+++.|+..|.++..-....+.+.+.++++.+.+.|++.
T Consensus 111 ~~aGl~~v~ISlDs~~~e~~~~i~~--~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 111 ADAGLKRLNISLDTLRPELFAALTR--NGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred HHcCCCeEEEEeccCCHHHhhhhcC--CCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeE
Confidence 7889999988776543322233322 234677788888888888732443322122355677888888888888764
No 90
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=95.52 E-value=0.54 Score=48.26 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=99.0
Q ss_pred HHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEee--ccc----------------chhhH
Q 007056 101 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL--SRC----------------NERDI 162 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~--~r~----------------~~~dI 162 (620)
.+.++.+.++|++.||+.+|.. .+.+.++.+.+.. |+......+ ... ..+.+
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~~~~--~~~~~~~~~l~~~--------gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFPYD--YDIEELKQVLASN--------KLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGV 87 (258)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC--CCHHHHHHHHHHc--------CCcEEEEcCCCCccccCcCccccCCCcHHHHHHHH
Confidence 3457778889999999977542 3456666665543 222111111 100 12335
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCH----HHHHHHHHHHHHHHHHcCCCEEEEcCC------CCCCCCHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTK----QQVVEIARSMVKFARSLGCDDVEFSPE------DAGRSDRKF 232 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~----ee~l~~~~~~v~~a~~~G~~~V~f~~e------d~~r~d~e~ 232 (620)
+++++..+..|.+.|.++....+ -+.+. +...+.+.++.++|++.|+. +.+-+. ...-.+.+.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~n~~~~~~~~~~~~~~ 160 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDIL-LLIEPINHFDIPGFHLTGTRQ 160 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCCCcCCCCCccCCHHH
Confidence 66666666678888776532210 01122 33455667778888888874 544221 111234555
Q ss_pred HHHHHHHHHHcCCcEEe-ecCCccccCH-HHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 233 LYEILGEVIKVGATTLN-IPDTVGITMP-TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~-L~DTvG~~~P-~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
+.++++.+ +.+.+. .-||.=.... ..+.+.++.+.. -...+|.++..+-
T Consensus 161 ~~~ll~~v---~~~~v~l~~D~~h~~~~g~~~~~~~~~~~~-------ri~~vHikD~~~~------------------- 211 (258)
T PRK09997 161 ALKLIDDV---GCCNLKIQYDIYHMQRMEGELTNTMTQWAD-------KIGHLQIADNPHR------------------- 211 (258)
T ss_pred HHHHHHHh---CCCCEEEEeEHHHhhhcCCcHHHHHHHhhC-------cccEEEeCCCCCC-------------------
Confidence 55666543 444343 3355322211 112333333322 2358888874210
Q ss_pred cccccCCcCcccHHHHHHHHHhccc
Q 007056 311 INGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 311 i~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
.-+| .|..+...++..|+..|+
T Consensus 212 -~~~G--~G~id~~~i~~aL~~~Gy 233 (258)
T PRK09997 212 -GEPG--TGEINYDYLFKVIENSDY 233 (258)
T ss_pred -CCCC--CCcCCHHHHHHHHHHhCC
Confidence 1234 489999999999998764
No 91
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=95.51 E-value=0.25 Score=54.20 Aligned_cols=191 Identities=18% Similarity=0.129 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHH-HHHHhcCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA-WEAVKYAK 173 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a-~eal~~ag 173 (620)
.+.++-+++++.|...++.+||+|.|-.-..-.+.++.|.+...+. +.++-+ ...|+... .+.+..+|
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~--------~I~~DL---K~~Di~~~vv~~~a~aG 250 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDA--------FIVADL---KTLDTGNLEARMAADAT 250 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCC--------eEEEEe---cccChhhHHHHHHHhcC
Confidence 5788999999999988888999998754333357788887752221 122222 23355444 55566779
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec--
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP-- 251 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~-- 251 (620)
++.+.+-....+ +++.++++.+|++|+. +..+.- ...++.+.+.+ + ..++|.|.+-
T Consensus 251 AD~vTVH~ea~~---------------~ti~~ai~~akk~Gik-vgVD~l-np~tp~e~i~~----l-~~~vD~Vllht~ 308 (391)
T PRK13307 251 ADAVVISGLAPI---------------STIEKAIHEAQKTGIY-SILDML-NVEDPVKLLES----L-KVKPDVVELHRG 308 (391)
T ss_pred CCEEEEeccCCH---------------HHHHHHHHHHHHcCCE-EEEEEc-CCCCHHHHHHH----h-hCCCCEEEEccc
Confidence 998766544332 3456788999999975 444211 00233344433 2 5688877665
Q ss_pred -CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHH
Q 007056 252 -DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAF 330 (620)
Q Consensus 252 -DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L 330 (620)
|+-+... .-+.++.+++... ++.|.+ |-|....|.-.++++||+.+ +.|=+ =.+..+.++.+..|
T Consensus 309 vdp~~~~~---~~~kI~~ikk~~~---~~~I~V----dGGI~~eti~~l~~aGADiv---VVGsa-If~a~Dp~~aak~l 374 (391)
T PRK13307 309 IDEEGTEH---AWGNIKEIKKAGG---KILVAV----AGGVRVENVEEALKAGADIL---VVGRA-ITKSKDVRRAAEDF 374 (391)
T ss_pred cCCCcccc---hHHHHHHHHHhCC---CCcEEE----ECCcCHHHHHHHHHcCCCEE---EEeHH-HhCCCCHHHHHHHH
Confidence 3323222 2246677776533 234444 45888888889999999976 33311 01334555555555
Q ss_pred Hh
Q 007056 331 KC 332 (620)
Q Consensus 331 ~~ 332 (620)
..
T Consensus 375 ~~ 376 (391)
T PRK13307 375 LN 376 (391)
T ss_pred HH
Confidence 43
No 92
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.50 E-value=0.55 Score=47.40 Aligned_cols=151 Identities=24% Similarity=0.227 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.++-+++++.|.+.|++.||+++ .+|.-.+.++.+++..++. .|-+=+-.+.++.+.++++ |.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~~~~~~~I~~l~~~~p~~---------~IGAGTVl~~~~a~~a~~a----GA 88 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RTPAALEAIRLIAKEVPEA---------LIGAGTVLNPEQLAQAIEA----GA 88 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CCccHHHHHHHHHHHCCCC---------EEEEeeccCHHHHHHHHHc----CC
Confidence 5789999999999999999999996 4566667888888754321 2222223455667776665 77
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 254 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv 254 (620)
+-+.. |.. + .+.++++++.|+. +-|- -.+|. | +..+.++|++.+.+-+
T Consensus 89 ~Fivs--P~~----------~--------~~vi~~a~~~~i~---~iPG---~~Tpt---E-i~~a~~~Ga~~vKlFP-- 136 (212)
T PRK05718 89 QFIVS--PGL----------T--------PPLLKAAQEGPIP---LIPG---VSTPS---E-LMLGMELGLRTFKFFP-- 136 (212)
T ss_pred CEEEC--CCC----------C--------HHHHHHHHHcCCC---EeCC---CCCHH---H-HHHHHHCCCCEEEEcc--
Confidence 75432 221 1 1567888888865 2221 12333 2 4457789999999844
Q ss_pred cccCHHHH---HHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcC
Q 007056 255 GITMPTEF---GKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGA 304 (620)
Q Consensus 255 G~~~P~~v---~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA 304 (620)
.+. -..++.++.-+|+ +++. =.-|...-|.-.-+.+|+
T Consensus 137 -----a~~~gg~~~lk~l~~p~p~---~~~~----ptGGV~~~ni~~~l~ag~ 177 (212)
T PRK05718 137 -----AEASGGVKMLKALAGPFPD---VRFC----PTGGISPANYRDYLALPN 177 (212)
T ss_pred -----chhccCHHHHHHHhccCCC---CeEE----EeCCCCHHHHHHHHhCCC
Confidence 331 2466777777774 4444 245777788888888893
No 93
>PRK09234 fbiC FO synthase; Reviewed
Probab=95.49 E-value=0.93 Score=54.60 Aligned_cols=224 Identities=16% Similarity=0.053 Sum_probs=132.5
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-hHH----HHHHHHHHHhcccccccCCccceEEeeccc--------
Q 007056 91 PGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK-EDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-------- 157 (620)
Q Consensus 91 ~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-------- 157 (620)
....++.++.++.++...+.|+..|-+-. +..| .+. +.++.|.+..+. ..+++|++.
T Consensus 553 ~~y~Ls~eeI~~~a~ea~~~G~tev~i~g-G~~p~~~~~~y~~lir~IK~~~p~---------i~i~afsp~Ei~~~a~~ 622 (843)
T PRK09234 553 DAYTLSLDEVADRAWEAWVAGATEVCMQG-GIHPELPGTGYADLVRAVKARVPS---------MHVHAFSPMEIVNGAAR 622 (843)
T ss_pred CcccCCHHHHHHHHHHHHHCCCCEEEEec-CCCCCcCHHHHHHHHHHHHHhCCC---------eeEEecChHHHHHHHHH
Confidence 35679999999999999999999887742 2233 123 445555543211 256666431
Q ss_pred chhhHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHH
Q 007056 158 NERDIKTAWEAVKYAKRPRIHT-FIATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 233 (620)
Q Consensus 158 ~~~dI~~a~eal~~ag~~~v~i-~~~~Sd~h~~~~l---~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l 233 (620)
.--.++..+..|+++|++.++- .....+-.+...+ +.+.++- .+.++.|+++|+. ++-+...+.--+++..
T Consensus 623 ~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~w----le~i~~Ah~lGi~-~~stmm~G~~Et~edr 697 (843)
T PRK09234 623 LGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEW----IEVVTTAHEVGLR-SSSTMMYGHVDTPRHW 697 (843)
T ss_pred cCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHH----HHHHHHHHHcCCC-cccceEEcCCCCHHHH
Confidence 1112345567788899998752 1111111122222 2243333 4688889999986 4333333444567788
Q ss_pred HHHHHHHHHcCCc------EEe----ecCC--------ccccCHHHHHHHHHHHHHhCCC-CCceeEEEecCCCcchHHH
Q 007056 234 YEILGEVIKVGAT------TLN----IPDT--------VGITMPTEFGKLIADIKANTPG-IENVVISTHCQNDLGLSTA 294 (620)
Q Consensus 234 ~~~~~~~~~aGa~------~I~----L~DT--------vG~~~P~~v~~li~~l~~~~~~-~~~v~i~~H~HND~GlAvA 294 (620)
.+.+..+.+.+.+ -|- -++| ....+|.+.-+++...|=-+|+ +.++.-++ ..+|.-
T Consensus 698 v~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w---v~lg~~-- 772 (843)
T PRK09234 698 VAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW---VKLGVE-- 772 (843)
T ss_pred HHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh---hhcCHH--
Confidence 8888888888753 121 2233 1237889999998888877763 32344444 344433
Q ss_pred HHHHHHHhcCcEEeeccccc------cCCcC-cccHHHHHHHHHhcc
Q 007056 295 NTIAGACAGARQVEVTINGI------GERAG-NASLEEVVMAFKCRG 334 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti~Gl------GERaG-Na~lEevv~~L~~~~ 334 (620)
-+..++.+||+-+.+|+..= |...| ..+.+++...++..|
T Consensus 773 ~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG 819 (843)
T PRK09234 773 GTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAG 819 (843)
T ss_pred HHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcC
Confidence 35789999999998886430 11222 235666666665544
No 94
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.44 E-value=1.5 Score=43.03 Aligned_cols=156 Identities=20% Similarity=0.191 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 175 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~ 175 (620)
+.++-+++++.|.+.|++.||+-+ .++...+.++.+.+..++ ..+.+-.-...++++.++++ |.+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~--~~~~~~~~i~~l~~~~~~---------~~iGag~v~~~~~~~~a~~~----Ga~ 78 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITL--RTPGALEAIRALRKEFPE---------ALIGAGTVLTPEQADAAIAA----GAQ 78 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--CChhHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHc----CCC
Confidence 588889999999999999999976 355566788888775321 11222122346677776664 888
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc
Q 007056 176 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 255 (620)
Q Consensus 176 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG 255 (620)
.||. +.++ .+.+++++.+|.. +..++ .+++.+ ..+.++|+|.|.+ +-.
T Consensus 79 ~i~~--p~~~------------------~~~~~~~~~~~~~-~i~gv-----~t~~e~----~~A~~~Gad~i~~-~p~- 126 (190)
T cd00452 79 FIVS--PGLD------------------PEVVKAANRAGIP-LLPGV-----ATPTEI----MQALELGADIVKL-FPA- 126 (190)
T ss_pred EEEc--CCCC------------------HHHHHHHHHcCCc-EECCc-----CCHHHH----HHHHHCCCCEEEE-cCC-
Confidence 8764 3222 2567788888765 43333 244443 3345799999987 332
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 256 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 256 ~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
.|. -.++++.+++.+|+ +++..= -|.-..|....+++||+.|=
T Consensus 127 --~~~-g~~~~~~l~~~~~~---~p~~a~----GGI~~~n~~~~~~~G~~~v~ 169 (190)
T cd00452 127 --EAV-GPAYIKALKGPFPQ---VRFMPT----GGVSLDNAAEWLAAGVVAVG 169 (190)
T ss_pred --ccc-CHHHHHHHHhhCCC---CeEEEe----CCCCHHHHHHHHHCCCEEEE
Confidence 222 45567777776664 334332 35556899999999988763
No 95
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.44 E-value=0.29 Score=49.18 Aligned_cols=174 Identities=19% Similarity=0.228 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcC
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 172 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 172 (620)
...+.++-+.+++.+.+. +|+||+|-|-....-.+.++.|++..++. ..++-+--+..-+++. +...++
T Consensus 11 D~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG~~aV~~lr~~~pd~--------~IvAD~Kt~D~G~~e~--~ma~~a 79 (217)
T COG0269 11 DLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEGMRAVRALRELFPDK--------IIVADLKTADAGAIEA--RMAFEA 79 (217)
T ss_pred cccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhhHHHHHHHHHHCCCC--------eEEeeeeecchhHHHH--HHHHHc
Confidence 357899999999999999 99999999975555568899998865432 2344443333333432 222345
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec-
Q 007056 173 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP- 251 (620)
Q Consensus 173 g~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~- 251 (620)
|.+.+.+...+. .+-+.++++.|++.|.. +.... .+-.|++...+ .+.++|++.+.+=
T Consensus 80 GAd~~tV~g~A~---------------~~TI~~~i~~A~~~~~~-v~iDl--~~~~~~~~~~~---~l~~~gvd~~~~H~ 138 (217)
T COG0269 80 GADWVTVLGAAD---------------DATIKKAIKVAKEYGKE-VQIDL--IGVWDPEQRAK---WLKELGVDQVILHR 138 (217)
T ss_pred CCCEEEEEecCC---------------HHHHHHHHHHHHHcCCe-EEEEe--ecCCCHHHHHH---HHHHhCCCEEEEEe
Confidence 888888766554 24566888889998864 54433 22344444433 3344787766652
Q ss_pred ----CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 252 ----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 252 ----DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
-+.|...+++--+-++.+.+. ...+.+ .-|+-.-+.-.....|++.|
T Consensus 139 g~D~q~~G~~~~~~~l~~ik~~~~~-----g~~vAV----aGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 139 GRDAQAAGKSWGEDDLEKIKKLSDL-----GAKVAV----AGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred cccHhhcCCCccHHHHHHHHHhhcc-----CceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence 233544444444444443332 122333 24666666666677776655
No 96
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=95.35 E-value=1.5 Score=45.36 Aligned_cols=214 Identities=17% Similarity=0.143 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--C------CCChhHHHHHHHHHHHhcccccccCCccceEEeecccc-------h
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGF--P------AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN-------E 159 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P------~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~-------~ 159 (620)
++.+++++++ .++|++.||+.. + ..++++.+.++.+.+..+..... ...+....+.... .
T Consensus 10 ~~l~~~l~~a---~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~r~~~~ 84 (279)
T cd00019 10 FGLENALKRA---KEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLS--VHAPYLINLASPDKEKREKSI 84 (279)
T ss_pred ccHHHHHHHH---HHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEE--EEcCceeccCCCCHHHHHHHH
Confidence 7777766655 566999998842 2 12445566666665542111000 0001011121111 1
Q ss_pred hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-CC---CCCCHHHHHH
Q 007056 160 RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DA---GRSDRKFLYE 235 (620)
Q Consensus 160 ~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-d~---~r~d~e~l~~ 235 (620)
+.++++++..+..|.+.+.++....+.. ......+..++.+.+++++|++.|+. +.+-+. .. .-.+++.+.+
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~---~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~~~~~~~t~~~~~~ 160 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQ---SKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQGNEIGSSFEELKE 160 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCC---CHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCCCCCCCCCHHHHHH
Confidence 1234556666667888776644432100 00012345567777788888888874 555222 11 1345677777
Q ss_pred HHHHHHHcCCcEEe-ecCCc-----ccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 236 ILGEVIKVGATTLN-IPDTV-----GIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 236 ~~~~~~~aGa~~I~-L~DTv-----G~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
+++.+- +-+.+. +.|+. |.. +|++..+.+..+.+.++. +-...+|.||..+.-. + ..-
T Consensus 161 li~~v~--~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~--~~i~~vHikD~~~~~~---------~-~~~ 226 (279)
T cd00019 161 IIDLIK--EKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGL--EYLKAIHLNDSKGELG---------S-GKD 226 (279)
T ss_pred HHHhcC--CCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhCh--hheeEEEEEcCCCccc---------C-CCc
Confidence 777653 022232 22332 222 356677788777776542 2457999999754310 0 000
Q ss_pred eeccccccCCcCcccHHHHHHHHHhccc
Q 007056 308 EVTINGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 308 d~Ti~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
.-..+| .|..+..+++..|+..++
T Consensus 227 --~~~~~G--~G~id~~~~l~~L~~~~y 250 (279)
T cd00019 227 --RHEPIG--EGDIDGEELFKELKKDPY 250 (279)
T ss_pred --cccCCC--CCCcCCHHHHHHHHhCcc
Confidence 012223 588999999999998653
No 97
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.32 E-value=0.69 Score=47.80 Aligned_cols=208 Identities=16% Similarity=0.145 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCC---------CChhHHHHHHHHHHHhcccccccCCccceEE--e-----eccc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPA---------ASKEDFEAVRTIAKEVGNAVDAESGYVPVIC--G-----LSRC 157 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~---------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~--~-----~~r~ 157 (620)
.+|.++.++. +.++|++.||+..+. .++++.+.++.+.+..+-. ++.++ + ++..
T Consensus 15 ~~~~~e~~~~---~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~-------i~~~~~~~~~~~~~~~~ 84 (284)
T PRK13210 15 HLSWEERLVF---AKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVR-------IPSMCLSGHRRFPFGSR 84 (284)
T ss_pred CCCHHHHHHH---HHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCC-------ceEEecccccCcCCCCC
Confidence 4676666554 457899999997532 1234455566555543221 11121 1 1111
Q ss_pred c-------hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCC
Q 007056 158 N-------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSD 229 (620)
Q Consensus 158 ~-------~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-d~~r~d 229 (620)
. .+.++++++..+..|++.|.+.... ......-....++..+.+.+++++|+++|+. +.+-+. ...-.+
T Consensus 85 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~~ 161 (284)
T PRK13210 85 DPATRERALEIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFMNS 161 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcc--cccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEecCccccCC
Confidence 1 1234556666666788888764211 0000000123466777888889999999974 554222 112234
Q ss_pred HHHHHHHHHHHHHcCCcEEeec-CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 230 RKFLYEILGEVIKVGATTLNIP-DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
++.+.++++.+ +-+.+.++ |+. .+.=.. .+....++. .. +-...+|.+|..+.-.. ..|... +
T Consensus 162 ~~~~~~l~~~v---~~~~~~~~~D~~-h~~~~~-~~~~~~l~~-~~---~~i~~vHikD~~~~~~~------~~g~~~-~ 225 (284)
T PRK13210 162 ISKWKKWDKEI---DSPWLTVYPDVG-NLSAWG-NDVWSELKL-GI---DHIAAIHLKDTYAVTET------SKGQFR-D 225 (284)
T ss_pred HHHHHHHHHHc---CCCceeEEecCC-hhhhcC-CCHHHHHHH-hc---CeEEEEEeccccccccC------CCCccc-c
Confidence 55565666554 44455555 552 211000 112233332 22 24579999996532000 011110 1
Q ss_pred eccccccCCcCcccHHHHHHHHHhccc
Q 007056 309 VTINGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 309 ~Ti~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
..+| .|+.+..+++..|+..++
T Consensus 226 ---~p~G--~G~id~~~~~~~L~~~gy 247 (284)
T PRK13210 226 ---VPFG--EGCVDFVGIFKTLKELNY 247 (284)
T ss_pred ---ccCC--CcccCHHHHHHHHHHcCC
Confidence 1234 489999999999998764
No 98
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.22 E-value=1.7 Score=45.17 Aligned_cols=184 Identities=21% Similarity=0.259 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec----CCCC---h-hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF----PAAS---K-EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf----P~~s---~-~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
|..++.++-++.+..+.+.|.++|++|. |... + +|++.+..+.+.+.... . .| ...--.+.+-++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~----~-~p--lSIDT~~~~v~e 90 (257)
T cd00739 18 GRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL----D-VL--ISVDTFRAEVAR 90 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----C-Cc--EEEeCCCHHHHH
Confidence 4558999999999999999999999995 3322 2 34555443333322110 0 12 233334556666
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC--------------C
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRS--------------D 229 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~--------------d 229 (620)
.|++. |++.|. ++|- ... + .++++.++++|+. +...+.++... -
T Consensus 91 ~al~~----G~~iIN---disg--------~~~----~--~~~~~l~~~~~~~-vV~m~~~g~p~~~~~~~~~~~~~~~~ 148 (257)
T cd00739 91 AALEA----GADIIN---DVSG--------GSD----D--PAMLEVAAEYGAP-LVLMHMRGTPKTMQENPYYEDVVDEV 148 (257)
T ss_pred HHHHh----CCCEEE---eCCC--------CCC----C--hHHHHHHHHcCCC-EEEECCCCCCcccccCCCcccHHHHH
Confidence 66664 666554 3331 000 0 2345556677775 33332221110 1
Q ss_pred HHHHHHHHHHHHHcCCc--EEeecCCcccc-CHHHHHHHHHHH---HHhCCCCCceeEEE------------ecCCCcch
Q 007056 230 RKFLYEILGEVIKVGAT--TLNIPDTVGIT-MPTEFGKLIADI---KANTPGIENVVIST------------HCQNDLGL 291 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~--~I~L~DTvG~~-~P~~v~~li~~l---~~~~~~~~~v~i~~------------H~HND~Gl 291 (620)
.+++.+.++.+.+.|.. .|.+==-+|.. ++++-.++++.+ ++. +. .+-+|+ ..++..+-
T Consensus 149 ~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~--~~-pil~G~SrkSfig~~~~~~~~~r~~~ 225 (257)
T cd00739 149 LSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQL--GL-PVLVGASRKSFIGALLGREPKDRDWG 225 (257)
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhC--CC-cEEEEecccHHHHHhcCCCccccchh
Confidence 25666777778888874 33331122332 234444444443 332 11 133333 22344455
Q ss_pred HHHHHHHHHHhcCcEE
Q 007056 292 STANTIAGACAGARQV 307 (620)
Q Consensus 292 AvANslaAv~aGA~~V 307 (620)
-+|-+..|++.||+.|
T Consensus 226 t~~~~~~~~~~Ga~ii 241 (257)
T cd00739 226 TLALSALAAANGADIV 241 (257)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 5556666777777765
No 99
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.20 E-value=0.85 Score=45.77 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.++-+++++.|.+.|++.||+.| .+|.-.+.++++++..+. ..+-+=+-.+.++.+.+.++ |.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~---------~~vGAGTVl~~~~a~~a~~a----GA 81 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPD---------ALIGAGTVLNPEQLRQAVDA----GA 81 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHc----CC
Confidence 3789999999999999999999987 567777888888875421 12222233466777777665 77
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 254 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv 254 (620)
+-+ +.|.++ .+.+++++++|+. +-| + -.+|.. +..+.++|++.+-+
T Consensus 82 ~Fi--vsP~~~------------------~~v~~~~~~~~i~---~iP--G-~~TptE----i~~A~~~Ga~~vKl---- 127 (204)
T TIGR01182 82 QFI--VSPGLT------------------PELAKHAQDHGIP---IIP--G-VATPSE----IMLALELGITALKL---- 127 (204)
T ss_pred CEE--ECCCCC------------------HHHHHHHHHcCCc---EEC--C-CCCHHH----HHHHHHCCCCEEEE----
Confidence 654 233321 2678899999874 323 1 123332 23466899998764
Q ss_pred cccCHHH-H--HHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 255 GITMPTE-F--GKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 255 G~~~P~~-v--~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
-|-. + ...++.++.=+|+. ++- -.-|....|.-.-+.+|+..+
T Consensus 128 ---FPA~~~GG~~yikal~~plp~i---~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 128 ---FPAEVSGGVKMLKALAGPFPQV---RFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred ---CCchhcCCHHHHHHHhccCCCC---cEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 2322 2 25778888777753 332 346777789999999998865
No 100
>PRK06801 hypothetical protein; Provisional
Probab=95.14 E-value=2.7 Score=44.36 Aligned_cols=181 Identities=19% Similarity=0.178 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh----hH-HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+.+.+.|=-.+|.... .. ...++.+++.. -+|...-|--+ ..+.++.|++
T Consensus 25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpV~lHlDH~~~~e~i~~Ai~ 95 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARH---------DIPVVLNLDHGLHFEAVVRALR 95 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999999977554554321 11 24455555532 13444333333 2355666655
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE--E----cCCC---------CCCCCHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--F----SPED---------AGRSDRKF 232 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~--f----~~ed---------~~r~d~e~ 232 (620)
+ |...|.+=.+ ..+.+|+++..++++++|+.+|.. |+ . +.++ ...++|+.
T Consensus 96 ~----GftSVm~D~S----------~l~~eeNi~~t~~v~~~a~~~gv~-VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~ 160 (286)
T PRK06801 96 L----GFSSVMFDGS----------TLEYEENVRQTREVVKMCHAVGVS-VEAELGAVGGDEGGALYGEADSAKFTDPQL 160 (286)
T ss_pred h----CCcEEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEeecCcccCCCCCcccCCcccccCCCHHH
Confidence 4 8888876333 246789999999999999999974 53 2 1111 12567777
Q ss_pred HHHHHHHHHHcCCcEEeecCCcccc------CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcE
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGIT------MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 306 (620)
+.++++ +.|+|.+.+ ++|.. .|.-=-++++.+++.++ +||.+|+ ..|....|...++.+|++-
T Consensus 161 a~~f~~---~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~----~PLVlHG--GSgi~~e~~~~~i~~Gi~K 229 (286)
T PRK06801 161 ARDFVD---RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG----LPLVLHG--GSGISDADFRRAIELGIHK 229 (286)
T ss_pred HHHHHH---HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC----CCEEEEC--CCCCCHHHHHHHHHcCCcE
Confidence 766664 469998877 33322 22222346667777653 6788776 4477789999999999999
Q ss_pred Eee
Q 007056 307 VEV 309 (620)
Q Consensus 307 Vd~ 309 (620)
|+.
T Consensus 230 INv 232 (286)
T PRK06801 230 INF 232 (286)
T ss_pred EEe
Confidence 854
No 101
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.09 E-value=2.2 Score=44.50 Aligned_cols=177 Identities=15% Similarity=0.207 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH--------HHHHHHHHHhcccccccCCccceEEeecccchhhHHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF--------EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 164 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~--------e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 164 (620)
=+.++-+++|+.|.++|+..+=.|+ |.++|..| ..+++++++. |+ +.++- -.....++.
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--------Gl-~~~te--~~d~~~~~~ 106 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKY--------NL-PVVTE--VMDTRDVEE 106 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHc--------CC-CEEEe--eCChhhHHH
Confidence 3789999999999999999999885 66665332 3344444332 22 12211 123344444
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG 244 (620)
..+ . ++.+.| ++-+... .+.++.+...|.. |.++- +.-.+++.+...++.+...|
T Consensus 107 l~~----~-vd~~kI--ga~~~~n---------------~~LL~~~a~~gkP-V~lk~--G~~~s~~e~~~A~e~i~~~G 161 (266)
T PRK13398 107 VAD----Y-ADMLQI--GSRNMQN---------------FELLKEVGKTKKP-ILLKR--GMSATLEEWLYAAEYIMSEG 161 (266)
T ss_pred HHH----h-CCEEEE--CcccccC---------------HHHHHHHhcCCCc-EEEeC--CCCCCHHHHHHHHHHHHhcC
Confidence 333 2 455554 3322111 2345555567875 77743 22346777777788888889
Q ss_pred CcEEeecCC----c-cccCHHHHH-HHHHHHHHhCCCCCceeEEE-ecCCC--cchHHHHHHHHHHhcCc--EEeeccc
Q 007056 245 ATTLNIPDT----V-GITMPTEFG-KLIADIKANTPGIENVVIST-HCQND--LGLSTANTIAGACAGAR--QVEVTIN 312 (620)
Q Consensus 245 a~~I~L~DT----v-G~~~P~~v~-~li~~l~~~~~~~~~v~i~~-H~HND--~GlAvANslaAv~aGA~--~Vd~Ti~ 312 (620)
-..+.||.. + ++. +..+. ..+..+++.++ +||++ =.|-. .-+...-+++|+.+||+ .|+.-+.
T Consensus 162 n~~i~L~~rG~~t~~~Y~-~~~vdl~~i~~lk~~~~----~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 162 NENVVLCERGIRTFETYT-RNTLDLAAVAVIKELSH----LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred CCeEEEEECCCCCCCCCC-HHHHHHHHHHHHHhccC----CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 877777764 3 333 33332 34556666553 45666 33432 23557779999999999 6765554
No 102
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.01 E-value=2.2 Score=42.66 Aligned_cols=167 Identities=20% Similarity=0.245 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEe-cCCCChhHHHHHHHHHHHhcccccccCCccceE-EeecccchhhHHHHHHHHhcCC
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI-CGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvG-fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i-~~~~r~~~~dI~~a~eal~~ag 173 (620)
+..+-.++++...+.|.+.|=+- -+......++.++.+.+.+. .|.+ .++.+. ...++.++ .+|
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~---------iPi~~~~~i~~-~~~v~~~~----~~G 94 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS---------LPVLRKDFIID-PYQIYEAR----AAG 94 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC---------CCEEECCeecC-HHHHHHHH----HcC
Confidence 44466889999999999988663 23333333444555544321 1222 222222 23454444 459
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCC
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT 253 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DT 253 (620)
++.|++..+.-+ . +.+.+.+++++..|+. +.+.. ++++. ++.+.+.|++.+.+-.+
T Consensus 95 ad~v~l~~~~~~----------~----~~~~~~~~~~~~~g~~-~~v~v-----~~~~e----~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 95 ADAVLLIVAALD----------D----EQLKELYELARELGME-VLVEV-----HDEEE----LERALALGAKIIGINNR 150 (217)
T ss_pred CCEEEEeeccCC----------H----HHHHHHHHHHHHcCCe-EEEEE-----CCHHH----HHHHHHcCCCEEEEeCC
Confidence 999998665322 1 4556777788888985 33322 23333 55566789999988877
Q ss_pred ccccCHHHHHHHHHHHHHhCC-CCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 254 VGITMPTEFGKLIADIKANTP-GIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 254 vG~~~P~~v~~li~~l~~~~~-~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+...+..+ +++..+++.+| +. .+..+.-.++ ..|.....++||+.|
T Consensus 151 ~~~~~~~~~-~~~~~l~~~~~~~~-pvia~gGI~s-----~edi~~~~~~Ga~gv 198 (217)
T cd00331 151 DLKTFEVDL-NTTERLAPLIPKDV-ILVSESGIST-----PEDVKRLAEAGADAV 198 (217)
T ss_pred CccccCcCH-HHHHHHHHhCCCCC-EEEEEcCCCC-----HHHHHHHHHcCCCEE
Confidence 766666666 66777877764 21 1333333332 367888888898876
No 103
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=94.97 E-value=2.6 Score=42.94 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeec----------c------cc
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS----------R------CN 158 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~----------r------~~ 158 (620)
++.++. ++.+.++|++.||+.+|. ..+.+.++.+.+..+-. +++++ | ..
T Consensus 14 ~~l~e~---~~~~~e~G~~~vEl~~~~--~~~~~~l~~~l~~~gl~----------v~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR03234 14 LPFLER---FAAAAQAGFTGVEYLFPY--DWDAEALKARLAAAGLE----------QVLFNLPAGDWAAGERGIACLPGR 78 (254)
T ss_pred CCHHHH---HHHHHHcCCCEEEecCCc--cCCHHHHHHHHHHcCCe----------EEEEeCCCCccccCCCccccCCcc
Confidence 455554 455568899999998764 33456666666543221 22221 0 00
Q ss_pred ----hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCC----HHHHHHHHHHHHHHHHHcCCCEEEEcCC---C---
Q 007056 159 ----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT----KQQVVEIARSMVKFARSLGCDDVEFSPE---D--- 224 (620)
Q Consensus 159 ----~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t----~ee~l~~~~~~v~~a~~~G~~~V~f~~e---d--- 224 (620)
.+.++++++..+..|.+.|.+.....+ -+.+ .+..++.+.+++++|++.|+. +.+-+. +
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~-l~lE~~~~~~~~~ 151 (254)
T TIGR03234 79 EEEFREGVALAIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLT-LLIEPINSFDMPG 151 (254)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEECCcccCCC
Confidence 123445555556678888876543211 0111 234456678888899999974 554321 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEe-ecCCccccCH-HHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh
Q 007056 225 AGRSDRKFLYEILGEVIKVGATTLN-IPDTVGITMP-TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 302 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~aGa~~I~-L~DTvG~~~P-~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 302 (620)
..-.+++.+.++++.+ +-+.+. ..|+.=...- +...++++.+.. -...+|..|..|.
T Consensus 152 ~~l~t~~~~~~li~~v---~~~~~~i~~D~~h~~~~~e~~~~~i~~~~~-------~i~~vHi~D~~~~----------- 210 (254)
T TIGR03234 152 FFLTTTEQALAVIDDV---GRENLKLQYDLYHMQRMGGDLARTLAAYAA-------HIGHVQIADNPGR----------- 210 (254)
T ss_pred ChhcCHHHHHHHHHHh---CCCCEeEeeehhhhhhhCCCHHHHHHHhhc-------cEeEEEeCCCCCC-----------
Confidence 1123556666666544 433333 3355322210 112333333332 3468888774321
Q ss_pred cCcEEeeccccccCCcCcccHHHHHHHHHhccc
Q 007056 303 GARQVEVTINGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 303 GA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
.-.| .|+.+..+++..|+..|+
T Consensus 211 ---------~~~G--~G~id~~~il~~L~~~gy 232 (254)
T TIGR03234 211 ---------HEPG--TGEINYRFLFAVLDRLGY 232 (254)
T ss_pred ---------CCCC--CCccCHHHHHHHHHHCCC
Confidence 0133 599999999999998664
No 104
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=94.86 E-value=0.93 Score=48.40 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 171 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ 171 (620)
.|+.++.++ .+++.|+..|-+ |=|-..|+-.+.++.+.+. +....++.-+ -.++..++.++.
T Consensus 58 ~ls~ee~~~---~i~e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~---------g~~v~l~TNG----~ll~~~~~~l~~ 121 (318)
T TIGR03470 58 RLSVEECLR---AVDECGAPVVSIPGGEPLLHPEIDEIVRGLVAR---------KKFVYLCTNA----LLLEKKLDKFEP 121 (318)
T ss_pred CCCHHHHHH---HHHHcCCCEEEEeCccccccccHHHHHHHHHHc---------CCeEEEecCc----eehHHHHHHHHh
Confidence 478877654 456789887666 3366666544556655432 1112232222 122333444555
Q ss_pred CCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 007056 172 AKRPRIHTFI-ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 250 (620)
Q Consensus 172 ag~~~v~i~~-~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L 250 (620)
++...|.+.+ +..+.|-... ..+..++.+.+.++.+++.|+. |.+...-..+.+++.+.++++.+.+.|++.+.+
T Consensus 122 ~~~~~i~VSLDG~~e~hd~~~---~~~g~f~~~l~~I~~l~~~G~~-v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i 197 (318)
T TIGR03470 122 SPYLTFSVHLDGLREHHDASV---CREGVFDRAVEAIREAKARGFR-VTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTI 197 (318)
T ss_pred CCCcEEEEEEecCchhhchhh---cCCCcHHHHHHHHHHHHHCCCc-EEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 6666665543 3345554432 2234578888999999999985 555432223678999999999999999988877
Q ss_pred c---------CCccccCHHHHHHHHHHHHHh
Q 007056 251 P---------DTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 251 ~---------DTvG~~~P~~v~~li~~l~~~ 272 (620)
. |.--.+.++++.+++..+.+.
T Consensus 198 ~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 198 SPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred ecCcccccccccccccCHHHHHHHHHHHHhh
Confidence 3 222245677888888877653
No 105
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=94.85 E-value=3.2 Score=44.64 Aligned_cols=221 Identities=20% Similarity=0.133 Sum_probs=139.7
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCC-hhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAAS-KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s-~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
...++.++.++-|+...+.|.....+|.-.-. +.+++.+-.+++.+.+.. ++ ...+.++....+.. +.|+
T Consensus 81 ~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~----~l-e~c~slG~l~~eq~----~~L~ 151 (335)
T COG0502 81 RKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEEL----GL-EVCASLGMLTEEQA----EKLA 151 (335)
T ss_pred hhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhc----Cc-HHhhccCCCCHHHH----HHHH
Confidence 35689999999999999999777777643332 345555555555443221 22 34455665554433 4466
Q ss_pred cCCCCEEEEEecCCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC-CcEE
Q 007056 171 YAKRPRIHTFIATSGIHME-HKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTL 248 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~-~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG-a~~I 248 (620)
++|+++++--+-||+-+-. ..-..|.|+ -.+.++.+|+.|++ |+-+..-+---+.+.-.+.+..+.+.. ++.|
T Consensus 152 ~aGvd~ynhNLeTs~~~y~~I~tt~t~ed----R~~tl~~vk~~Gi~-vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsV 226 (335)
T COG0502 152 DAGVDRYNHNLETSPEFYENIITTRTYED----RLNTLENVREAGIE-VCSGGIVGLGETVEDRAELLLELANLPTPDSV 226 (335)
T ss_pred HcChhheecccccCHHHHcccCCCCCHHH----HHHHHHHHHHcCCc-cccceEecCCCCHHHHHHHHHHHHhCCCCCee
Confidence 7799998876666664443 223455554 55688999999996 654433333445566667777888887 7665
Q ss_pred ee------cCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCc
Q 007056 249 NI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 318 (620)
Q Consensus 249 ~L------~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERa 318 (620)
-| ++| .--..|.++-+.|+.+|=.+|... ++++ =.--.|.--....|+.|||+-|=.+. .+.-..
T Consensus 227 PIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~-Ir~s---~gr~~~~~~~q~~~~~aGansi~~g~-~~ltt~ 301 (335)
T COG0502 227 PINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSM-IRLS---AGRETMLPELQALAFMAGANSIFVGD-KYLTTP 301 (335)
T ss_pred eeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcce-eEcc---CCcccccHHHHHHHHHhccceeeecc-eEeecC
Confidence 43 233 445688999999999999999642 5554 12223333446778899999885555 222222
Q ss_pred CcccHHHHHHHHHh
Q 007056 319 GNASLEEVVMAFKC 332 (620)
Q Consensus 319 GNa~lEevv~~L~~ 332 (620)
| .+.++-...|+.
T Consensus 302 ~-~~~e~D~~~l~~ 314 (335)
T COG0502 302 G-PDEDKDLELLKD 314 (335)
T ss_pred C-CCchhHHHHHHH
Confidence 3 667766666665
No 106
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.84 E-value=1.2 Score=47.10 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc--------------cccCH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV--------------GITMP 259 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv--------------G~~~P 259 (620)
.+.+|.++.+...+.. ..+. |.++.+.+ -++..+.+.++.++++|+.-|+|-|.+ ....+
T Consensus 61 ~~~~e~~~~~~~I~~a---~~~P-v~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ 134 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDV---TTKP-IILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASV 134 (285)
T ss_pred CCHHHHHHHHHHHHhh---cCCC-EEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCH
Confidence 4577777765554433 2344 88999655 699999999999999999999998875 35678
Q ss_pred HHHHHHHHHHHHhCCCCCceeEEEe----c-CCCcchHHHHHHHHHHhcCcEEee
Q 007056 260 TEFGKLIADIKANTPGIENVVISTH----C-QNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 260 ~~v~~li~~l~~~~~~~~~v~i~~H----~-HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
++..+.|+..++.-.+. ++.|-.. . ...+--|+.=+.++.+|||+.|=.
T Consensus 135 ee~~~kI~Aa~~a~~~~-~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 135 EEFCGKIRAGKDAQTTE-DFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred HHHHHHHHHHHHhccCC-CeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence 88888888887652221 3556555 1 123556777888999999998754
No 107
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=94.75 E-value=3.4 Score=43.56 Aligned_cols=184 Identities=17% Similarity=0.138 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----hH-HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 166 (620)
.++.+.-..+++.-.+.+.+.|=.-+|.... .. ...++.+++... .+|...-+..+ ..+.++.++
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~vpv~lhlDH~~~~e~i~~ai 94 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS--------IVPVALHLDHGSSYESCIKAI 94 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC--------CCeEEEECCCCCCHHHHHHHH
Confidence 4678889999999999999988665554321 11 234555555321 13444333333 234445554
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE--cC----CC------CCCCCHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SP----ED------AGRSDRKFLY 234 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f--~~----ed------~~r~d~e~l~ 234 (620)
+ +|.+.|.+=.+ ..+.+|+++..++++++++..|.. |+. +. || .+.++++.+.
T Consensus 95 ~----~Gf~sVmid~s----------~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~~gg~ed~~~g~~~~~t~~eea~ 159 (282)
T TIGR01859 95 K----AGFSSVMIDGS----------HLPFEENLALTKKVVEIAHAKGVS-VEAELGTLGGIEDGVDEKEAELADPDEAE 159 (282)
T ss_pred H----cCCCEEEECCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCcCccccccccccccCCHHHHH
Confidence 4 38888765333 247789999999999999999974 653 22 22 4466888776
Q ss_pred HHHHHHHHcCCcEEeec-CC-cccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 235 EILGEVIKVGATTLNIP-DT-VGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~-DT-vG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
+.++ +.|+|.+.+. -| -|.. .|.-=-++++.+++.++ +||-.| ...|+-.-|...++++|++-|+.
T Consensus 160 ~f~~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~----iPlv~h--GgSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 160 QFVK---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN----IPLVLH--GASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred HHHH---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC----CCEEEE--CCCCCCHHHHHHHHHcCCCEEEE
Confidence 5554 3588877743 11 1111 12222446677777763 667655 55688888999999999998754
No 108
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.60 E-value=3.8 Score=43.23 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
..+.+.-..+++.-.+.+-+.|=-.+|.... .+ +..++.+++... +|...=|-.+ ..+.+.+|++
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~---------vPV~lHLDH~~~~e~i~~Ai~ 95 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMD---------VPVSLHLDHGKTFEDVKQAVR 95 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCC---------CCEEEECcCCCCHHHHHHHHH
Confidence 4678888999999999999988665664321 11 245555555421 2433333333 3456666655
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEE--EE----cCCCC------CCCCHHHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV--EF----SPEDA------GRSDRKFLYE 235 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V--~f----~~ed~------~r~d~e~l~~ 235 (620)
+ |...|.+=.| ..+.+|+++..++.+++|+..|+. | +. +.||. ..++|+.+.+
T Consensus 96 ~----GftSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~~T~pe~a~~ 160 (283)
T PRK07998 96 A----GFTSVMIDGA----------ALPFEENIAFTKEAVDFAKSYGVP-VEAELGAILGKEDDHVSEADCKTEPEKVKD 160 (283)
T ss_pred c----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEeccCCCccccccccccccCCHHHHHH
Confidence 4 8888866332 257889999999999999999974 5 33 33332 2578888766
Q ss_pred HHHHHHHcCCcEEeec--CCccccC-HHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 236 ILGEVIKVGATTLNIP--DTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~--DTvG~~~-P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
+++ +.|+|.+-++ -.=|.-. |.-=.++++.+++.+ ++||.+|+= .|..--....|+..|+.-|+
T Consensus 161 Fv~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~----~vPLVlHGg--SG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 161 FVE---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS----PVPLVIHGG--SGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred HHH---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC----CCCEEEeCC--CCCCHHHHHHHHHcCCcEEE
Confidence 665 5688755443 1112111 433247788888876 378887774 46667778899999988764
No 109
>PRK09989 hypothetical protein; Provisional
Probab=94.59 E-value=0.95 Score=46.42 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=95.4
Q ss_pred HHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEee-------c-------ccc----hhhH
Q 007056 101 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL-------S-------RCN----ERDI 162 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~-------~-------r~~----~~dI 162 (620)
.+.++.+.++|++.||+.+|.. .+.+.++.+.+.. ++....... . ... .+++
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~--~~~~~~~~~l~~~--------Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD--YSTLQIQKQLEQN--------HLTLALFNTAPGDINAGEWGLSALPGREHEARADI 87 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc--CCHHHHHHHHHHc--------CCcEEEeccCCCccCCCCCcccCCCccHHHHHHHH
Confidence 3566777888999999965432 2344555555432 221111110 0 000 2335
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCC----HHHHHHHHHHHHHHHHHcCCCEEEEcCC------CCCCCCHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT----KQQVVEIARSMVKFARSLGCDDVEFSPE------DAGRSDRKF 232 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t----~ee~l~~~~~~v~~a~~~G~~~V~f~~e------d~~r~d~e~ 232 (620)
+++++..+..|.+.|.++.+..+- +.+ .+...+.+.++.++|++.|.. +.+-+. ...-.+.+.
T Consensus 88 ~~~i~~A~~lg~~~v~v~~g~~~~------~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~l~~~~~~~~~~~~~~~ 160 (258)
T PRK09989 88 DLALEYALALNCEQVHVMAGVVPA------GEDAERYRAVFIDNLRYAADRFAPHGKR-ILVEALSPGVKPHYLFSSQYQ 160 (258)
T ss_pred HHHHHHHHHhCcCEEEECccCCCC------CCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEeCCCCCCCCCccCCHHH
Confidence 666665566688877665432210 112 233566677778888888864 433221 111123344
Q ss_pred HHHHHHHHHHcCCcEE-eecCCccccCHH-HHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 233 LYEILGEVIKVGATTL-NIPDTVGITMPT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I-~L~DTvG~~~P~-~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
+.++++ +.+.+.+ ..-||.-...+. .+.++++..... ...+|.++..+ ..
T Consensus 161 ~~~ll~---~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~r-------i~hvHi~D~~~------------------~~ 212 (258)
T PRK09989 161 ALAIVE---EVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGK-------YAHVQIAGLPD------------------RH 212 (258)
T ss_pred HHHHHH---HcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhh-------EEEEEECCCCC------------------CC
Confidence 444444 3454444 444765544332 233333332222 34777774111 11
Q ss_pred cccccCCcCcccHHHHHHHHHhccc
Q 007056 311 INGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 311 i~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
. .| .|..+..+++.+|+..|+
T Consensus 213 ~--pG--~G~id~~~i~~al~~~Gy 233 (258)
T PRK09989 213 E--PD--DGEINYPWLFRLFDEVGY 233 (258)
T ss_pred C--CC--CCCcCHHHHHHHHHHcCC
Confidence 2 34 488999999999998764
No 110
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=94.59 E-value=2.7 Score=43.60 Aligned_cols=202 Identities=15% Similarity=0.147 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCC---------ChhHHHHHHHHHHHhcccccccCCccceEEe-------eccc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAA---------SKEDFEAVRTIAKEVGNAVDAESGYVPVICG-------LSRC 157 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~---------s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-------~~r~ 157 (620)
.++.++.+++ +.++|++.||++.+.. ++.+.+.++...+..+-.+ ..++. ++..
T Consensus 15 ~~~~~e~l~~---~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i-------~~~~~~~~~~~~l~~~ 84 (279)
T TIGR00542 15 GECWLERLQL---AKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRI-------PSMCLSAHRRFPLGSK 84 (279)
T ss_pred CCCHHHHHHH---HHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCc-------eeeecCCCccCcCCCc
Confidence 3566666654 4678999999974321 2444455555444322211 12221 1111
Q ss_pred ch-------hhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC-CCCCC
Q 007056 158 NE-------RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSD 229 (620)
Q Consensus 158 ~~-------~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed-~~r~d 229 (620)
.+ +.++.+++..+..|.+.|.++.. +...........+...+.+.+++++|+++|+. +.+-+.. ..-.+
T Consensus 85 ~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t 161 (279)
T TIGR00542 85 DKAVRQQGLEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSS 161 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcC
Confidence 11 12445566666778888865421 10000000112455667778889999999974 5553221 12233
Q ss_pred HHHHHHHHHHHHHcCCcEEee-cCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 230 RKFLYEILGEVIKVGATTLNI-PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L-~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
++.+.++++ +.+-+.+.+ .|+.-...-. .+....++. .. +-...+|.+|..+ |. .+
T Consensus 162 ~~~~~~li~---~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~-~~---~~i~~vHikD~~~------------~~--~~ 218 (279)
T TIGR00542 162 ISKWLKWDH---YLNSPWFTLYPDIGNLSAWD--NDVQMELQL-GI---DKIVAIHLKDTKP------------GQ--FK 218 (279)
T ss_pred HHHHHHHHH---HcCCCceEEEeCcChhhhcc--CCHHHHHHH-hh---hhEEEEEeCCCCC------------Cc--cC
Confidence 444444443 344444433 4664221000 011222332 21 1357899998643 11 11
Q ss_pred eccccccCCcCcccHHHHHHHHHhccc
Q 007056 309 VTINGIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 309 ~Ti~GlGERaGNa~lEevv~~L~~~~~ 335 (620)
. ..+| .|+.+...++..|+..|+
T Consensus 219 ~--~p~G--~G~id~~~~~~aL~~~gy 241 (279)
T TIGR00542 219 D--VPFG--EGCVDFERCFKTLKQLNY 241 (279)
T ss_pred C--cCCC--CCccCHHHHHHHHHHhCC
Confidence 1 1233 588999999999998764
No 111
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=94.55 E-value=2.7 Score=43.65 Aligned_cols=125 Identities=25% Similarity=0.336 Sum_probs=70.4
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec----CCC---Ch-hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF----PAA---SK-EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf----P~~---s~-~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
|..++.++-++.++.+.+.|.++|.+|. |.. ++ +|++.+..+.+.+... . + .| ++. --.+.+-++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~-~---~-~p-lsi-DT~~~~vi~ 89 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ-P---D-VP-ISV-DTYRAEVAR 89 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-C---C-Ce-EEE-eCCCHHHHH
Confidence 4557899999999999999999999995 322 22 2455555554443211 0 1 12 322 234566677
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC-CC-------------C
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RS-------------D 229 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~-r~-------------d 229 (620)
.++++ |++.|. +++-. . -.++++.++++|.. +...+.+.. ++ -
T Consensus 90 ~al~~----G~~iIN---sis~~--------~-------~~~~~~l~~~~~~~-vV~m~~~g~p~~~~~~~~~~~~~~~~ 146 (257)
T TIGR01496 90 AALEA----GADIIN---DVSGG--------Q-------DPAMLEVAAEYGVP-LVLMHMRGTPRTMQENPHYEDVVEEV 146 (257)
T ss_pred HHHHc----CCCEEE---ECCCC--------C-------CchhHHHHHHcCCc-EEEEeCCCCCcccccCCCcccHHHHH
Confidence 66664 777554 33210 0 11344456677775 333221111 11 1
Q ss_pred HHHHHHHHHHHHHcCCc
Q 007056 230 RKFLYEILGEVIKVGAT 246 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~ 246 (620)
.+++.+.++.+.++|.+
T Consensus 147 ~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 147 LRFLEARAEELVAAGVA 163 (257)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 25677777778888973
No 112
>PRK06267 hypothetical protein; Provisional
Probab=94.55 E-value=3.8 Score=44.45 Aligned_cols=206 Identities=14% Similarity=0.122 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEE--EEecCCCChhHHH-HHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 94 TLTSKEKLDIARQLAKLGVDII--EAGFPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~I--EvGfP~~s~~d~e-~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
.++.++.++-++.+.+.|++.+ -.|++ ....+.+ .++.+... .. . ......++....+... ..
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~-~~~~el~~i~e~I~~~-~~-------~-~~~~s~G~~d~~~~~~----~~ 127 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYG-YTTEEINDIAEMIAYI-QG-------C-KQYLNVGIIDFLNINL----NE 127 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCC-CCHHHHHHHHHHHHHh-hC-------C-ceEeecccCCHHHHhh----cc
Confidence 5689999999999999999833 33555 3343332 23333221 11 1 1112233333322211 11
Q ss_pred cCCCCEEEEEecCC-H-HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 171 YAKRPRIHTFIATS-G-IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 171 ~ag~~~v~i~~~~S-d-~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
.+|+ ....-+. + +|....-+.+ .+...+.++.+++.|+. +..+..-+..-..+.+.+.++.+.+.+++.+
T Consensus 128 l~Gv---~g~~ET~~~~~~~~i~~~~s----~ed~~~~l~~ak~aGi~-v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v 199 (350)
T PRK06267 128 IEGV---VGAVETVNPKLHREICPGKP----LDKIKEMLLKAKDLGLK-TGITIILGLGETEDDIEKLLNLIEELDLDRI 199 (350)
T ss_pred ccCc---eeeeecCCHHHHHhhCCCCC----HHHHHHHHHHHHHcCCe-eeeeEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 2232 2222233 3 2322222344 44556788899999986 4332221112336778888888999998865
Q ss_pred e------ecCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE--eeccccccC
Q 007056 249 N------IPDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV--EVTINGIGE 316 (620)
Q Consensus 249 ~------L~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V--d~Ti~GlGE 316 (620)
. .++| .-...|+++.+++..+|-.+|..+ ++.+. . -+.+...+ .++.+||+.| ---+.+++.
T Consensus 200 ~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~-I~~~~-~-~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt 273 (350)
T PRK06267 200 TFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKIK-IITGT-W-VDKLTNIG---PLIMSGSNVITKFPLFSMYGT 273 (350)
T ss_pred EEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCC-cchhh-H-hHhcchhh---HHhhcCcceeeccchhccCcc
Confidence 4 3455 234678999999999999898643 33331 0 01111111 2566898887 224455567
Q ss_pred CcCcccHHHHH
Q 007056 317 RAGNASLEEVV 327 (620)
Q Consensus 317 RaGNa~lEevv 327 (620)
..|...-+++-
T Consensus 274 ~~g~~~~~~~~ 284 (350)
T PRK06267 274 KEGKRVENEIR 284 (350)
T ss_pred cCCCCHHHHHH
Confidence 77877776654
No 113
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.46 E-value=2 Score=45.15 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=80.1
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHc-CCC-EEEEcCCCC
Q 007056 149 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIH-MEHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDA 225 (620)
Q Consensus 149 ~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h-~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~-~V~f~~ed~ 225 (620)
|.++-+.-...++...+.+.+..+|.+.|.+-.++.... .-..++.+. +.+.+.++.+|+. ++. .|-+++.
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~----~~~~eiv~~vr~~~~~Pv~vKl~~~-- 164 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDP----EAVAEIVKAVKKATDVPVIVKLTPN-- 164 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCH----HHHHHHHHHHHhccCCCEEEEeCCC--
Confidence 344444334567777777777778899876654422110 001233333 4455556666655 443 1334542
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCCccccC-------------------H---HHHHHHHHHHHHhCCCCCceeEEE
Q 007056 226 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITM-------------------P---TEFGKLIADIKANTPGIENVVIST 283 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~-------------------P---~~v~~li~~l~~~~~~~~~v~i~~ 283 (620)
.+...++++.+.++|+|.|.+.+|.+... | ...-+.++.+++.++ ++|..
T Consensus 165 ----~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~----ipii~ 236 (296)
T cd04740 165 ----VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE----IPIIG 236 (296)
T ss_pred ----chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC----CCEEE
Confidence 23577888999999999998876543221 1 112356677776552 33332
Q ss_pred ecCCCcch-HHHHHHHHHHhcCcEEeec
Q 007056 284 HCQNDLGL-STANTIAGACAGARQVEVT 310 (620)
Q Consensus 284 H~HND~Gl-AvANslaAv~aGA~~Vd~T 310 (620)
.-|. -...+..++++||+.|..+
T Consensus 237 ----~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 237 ----VGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred ----ECCCCCHHHHHHHHHcCCCEEEEc
Confidence 1232 2367777888888877644
No 114
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.31 E-value=5.5 Score=42.08 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChh--HH----HHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE--DF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~--d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 166 (620)
.++.+.-..+++.-.+.+-+.|=-.+|....- .. ..++.+++.... -+|...=|-.+ ..+++.+++
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~VPV~lHLDHg~~~e~i~~ai 97 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI-------TVPVAIHLDHGSSFEKCKEAI 97 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCCHHHHHHHH
Confidence 47889999999999999999775556643221 12 345555553210 02444333333 234555555
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC------CCCCHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFLY 234 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~------~r~d~e~l~ 234 (620)
++ |...|.+=.| ..+.+|+++..++++++|+..|.. |+- +.||. ..|+|+...
T Consensus 98 ~~----GftSVM~DgS----------~lp~eeNi~~Trevv~~Ah~~gv~-VEaElG~igg~ed~~~~~~~~yT~peeA~ 162 (285)
T PRK07709 98 DA----GFTSVMIDAS----------HHPFEENVETTKKVVEYAHARNVS-VEAELGTVGGQEDDVIAEGVIYADPAECK 162 (285)
T ss_pred Hc----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeccCCccCCcccccccCCCHHHHH
Confidence 44 8888754333 256799999999999999999974 432 33332 258998887
Q ss_pred HHHHHHHHcCCcEEeec--CCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 235 EILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
++++ +-|+|.+-++ -.=|.- .|.-=.++++.|++.+ ++||.+|+ -.|+.--.-..|+..|+.-|+
T Consensus 163 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~----~iPLVLHG--gSG~~~e~~~~ai~~Gi~KiN 231 (285)
T PRK07709 163 HLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT----GVPLVLHG--GTGIPTADIEKAISLGTSKIN 231 (285)
T ss_pred HHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH----CCCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 7776 4588865542 111221 3444446778888876 37788776 477777888899999988763
No 115
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.28 E-value=2.4 Score=42.49 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.++-+++++.|.+.|++.||+.| .+|+-.+.++++++..+. ..|-+=+-.+.++.+.++++ |.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~--~tp~a~~~I~~l~~~~~~---------~~vGAGTVl~~e~a~~ai~a----GA 77 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITL--RTPAALDAIRAVAAEVEE---------AIVGAGTILNAKQFEDAAKA----GS 77 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCccHHHHHHHHHHHCCC---------CEEeeEeCcCHHHHHHHHHc----CC
Confidence 3789999999999999999999987 467777888888775421 12222223466777777665 76
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec--C
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP--D 252 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~--D 252 (620)
+-+ +.|.. -.+.+++++++|+. +-|- -.+|..+ ..+.++|++.|-+= +
T Consensus 78 ~Fi--vSP~~------------------~~~vi~~a~~~~i~---~iPG---~~TptEi----~~A~~~Ga~~vK~FPa~ 127 (201)
T PRK06015 78 RFI--VSPGT------------------TQELLAAANDSDVP---LLPG---AATPSEV----MALREEGYTVLKFFPAE 127 (201)
T ss_pred CEE--ECCCC------------------CHHHHHHHHHcCCC---EeCC---CCCHHHH----HHHHHCCCCEEEECCch
Confidence 643 22221 12678899999874 2231 1233322 34668999987742 3
Q ss_pred CccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCc
Q 007056 253 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 305 (620)
Q Consensus 253 TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~ 305 (620)
.+|. ..+++.++.=+|+. ++- -.-|...-|.-.-+.+|+.
T Consensus 128 ~~GG------~~yikal~~plp~~---~l~----ptGGV~~~n~~~~l~ag~~ 167 (201)
T PRK06015 128 QAGG------AAFLKALSSPLAGT---FFC----PTGGISLKNARDYLSLPNV 167 (201)
T ss_pred hhCC------HHHHHHHHhhCCCC---cEE----ecCCCCHHHHHHHHhCCCe
Confidence 3321 25788888878753 332 3457777899999999865
No 116
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.27 E-value=3.1 Score=41.74 Aligned_cols=157 Identities=21% Similarity=0.264 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.++-+++++.|.+.|++.||+.+ .++...+.++.+++..+.. ..|-+=+-...++++.++++ |.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~--~~~~~~~~i~~l~~~~~~~--------~~iGaGTV~~~~~~~~a~~a----GA 84 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPL--NSPDPFDSIAALVKALGDR--------ALIGAGTVLSPEQVDRLADA----GG 84 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCccHHHHHHHHHHHcCCC--------cEEeEEecCCHHHHHHHHHc----CC
Confidence 3889999999999999999999986 4566667888888764321 12222223466777777765 88
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee-cCC
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI-PDT 253 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L-~DT 253 (620)
+-++. |.++ .+.+++++..|.. +..++ .+++.+ ..+.++|+|.|.+ | +
T Consensus 85 ~fivs--p~~~------------------~~v~~~~~~~~~~-~~~G~-----~t~~E~----~~A~~~Gad~vk~Fp-a 133 (206)
T PRK09140 85 RLIVT--PNTD------------------PEVIRRAVALGMV-VMPGV-----ATPTEA----FAALRAGAQALKLFP-A 133 (206)
T ss_pred CEEEC--CCCC------------------HHHHHHHHHCCCc-EEccc-----CCHHHH----HHHHHcCCCEEEECC-C
Confidence 77664 3332 1456677777764 43443 333333 4456789999876 4 2
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 254 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 254 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
+..-|+. ++.++..+|. ++++..= -|.-..|.-.-+++||+.|
T Consensus 134 -~~~G~~~----l~~l~~~~~~--~ipvvai----GGI~~~n~~~~~~aGa~~v 176 (206)
T PRK09140 134 -SQLGPAG----IKALRAVLPP--DVPVFAV----GGVTPENLAPYLAAGAAGF 176 (206)
T ss_pred -CCCCHHH----HHHHHhhcCC--CCeEEEE----CCCCHHHHHHHHHCCCeEE
Confidence 1233554 4445555541 1333322 3677799999999999986
No 117
>PRK01060 endonuclease IV; Provisional
Probab=94.25 E-value=6.1 Score=40.80 Aligned_cols=209 Identities=11% Similarity=0.093 Sum_probs=96.9
Q ss_pred HHHHHHHhHcCCCEEEEec--CC------CChhHHHHHHHHHHHhcccccccCCccceEEeecccchh-------hHHHH
Q 007056 101 LDIARQLAKLGVDIIEAGF--PA------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------DIKTA 165 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGf--P~------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~-------dI~~a 165 (620)
.+.++.+.++|++.||+-- |. .++++.+.++++.+..+-.+..-....+-..-++-..++ .++++
T Consensus 15 ~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~ 94 (281)
T PRK01060 15 EGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQE 94 (281)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHH
Confidence 4567888999999999931 21 233445556665554222100000000100111111111 23334
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHH--HHcCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFA--RSLGCDDVEFSPEDAG----RSDRKFLYEILGE 239 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a--~~~G~~~V~f~~ed~~----r~d~e~l~~~~~~ 239 (620)
++.....|++.|.+...... .....++.++.+.+.++.+ ...|+. +.+-+.... -.+++.+.++++.
T Consensus 95 i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~gv~-l~iEn~~~~~~~~~~~~~~~~~l~~~ 167 (281)
T PRK01060 95 IERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQGVT-IVLENTAGQGSELGRRFEELARIIDG 167 (281)
T ss_pred HHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCCCE-EEEecCCCCCCcccCCHHHHHHHHHh
Confidence 44445567776655332110 0112234666666666655 233432 333111111 1356666666654
Q ss_pred HHHcCCcE-Eeec-CCc-----cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccc
Q 007056 240 VIKVGATT-LNIP-DTV-----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 312 (620)
Q Consensus 240 ~~~aGa~~-I~L~-DTv-----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~ 312 (620)
+ +-+. +.+| ||. |.-.+....+.++.+.+.++. +-...+|.||..+.. ..+.+ -+.
T Consensus 168 v---~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~--~~i~~vHl~D~~~~~--------~~~~d-~H~--- 230 (281)
T PRK01060 168 V---EDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGL--DRLKVMHLNDSKNEF--------GSRKD-RHA--- 230 (281)
T ss_pred c---CCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhCh--hheeEEEEecCCCcc--------cCCCC-ccc---
Confidence 4 2222 4433 443 211123444666666553321 124678888865421 00111 011
Q ss_pred cccCCcCcccHHHHHHHHHhccc
Q 007056 313 GIGERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 313 GlGERaGNa~lEevv~~L~~~~~ 335 (620)
.+| .|+.+.++++..|+..++
T Consensus 231 ~~G--~G~id~~~~~~~L~~~~y 251 (281)
T PRK01060 231 NLG--EGTIGFDALRYIVHDPRF 251 (281)
T ss_pred CCc--CCcCCHHHHHHHHhCccc
Confidence 223 488999999999997653
No 118
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=94.19 E-value=5.9 Score=42.00 Aligned_cols=185 Identities=17% Similarity=0.131 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----hH-HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+++-+.|=--+|.... +. ...++.+++.... -+|...=|--+..+.++.+++
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~-------~vPV~lHLDH~~~~~i~~ai~ 97 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGI-------TVPVAIHLDHGHYEDALECIE 97 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCHHHHHHHHH
Confidence 4678999999999999999987655554221 11 2445555554211 134444444443344444444
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC----C-CCCHHHHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA----G-RSDRKFLYEI 236 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~----~-r~d~e~l~~~ 236 (620)
.|...|.+=.+ ..+.+|+++..++++++|+..|.. |+- +-||. + .++++.+.++
T Consensus 98 ----~GftSVm~d~S----------~l~~eEni~~t~~v~~~a~~~gv~-vE~ElG~i~g~ed~~~g~s~~t~peea~~f 162 (293)
T PRK07315 98 ----VGYTSIMFDGS----------HLPVEENLKLAKEVVEKAHAKGIS-VEAEVGTIGGEEDGIIGKGELAPIEDAKAM 162 (293)
T ss_pred ----cCCCEEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEecCcccCcCccccCccCCCCHHHHHHH
Confidence 48888765333 256799999999999999999874 432 21332 2 3788877665
Q ss_pred HHHHHHcCCcEEeec--CCcccc---CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 237 LGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 237 ~~~~~~aGa~~I~L~--DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
. +.|+|.|-+. -.=|.. +|.-=-++++.+++.++ ++||-+|+- .|....|...+++.|++-|..
T Consensus 163 ~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~---~iPlVlhGG--SGi~~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 163 V----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP---GFPIVLHGG--SGIPDDQIQEAIKLGVAKVNV 231 (293)
T ss_pred H----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc---CCCEEEECC--CCCCHHHHHHHHHcCCCEEEE
Confidence 5 4699887776 221221 23233457788888774 367887765 478889999999999998754
No 119
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.16 E-value=4.1 Score=44.13 Aligned_cols=202 Identities=19% Similarity=0.187 Sum_probs=121.5
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhcccccccCCccceEEeeccc
Q 007056 85 RDGEQSPGA--TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC 157 (620)
Q Consensus 85 RDG~Qs~g~--~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 157 (620)
|.+.++-+. .++.+.-..+++.-.+.+-..|=--+|.... .+ ...++.+++... -+|...=|--+
T Consensus 14 ~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~--------~VPValHLDHg 85 (347)
T PRK09196 14 AEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP--------HIPVVMHQDHG 85 (347)
T ss_pred HHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC--------CCcEEEECCCC
Confidence 344444432 5788999999999999999977554554321 11 123333443210 12433333333
Q ss_pred -chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE--E----cCC-------
Q 007056 158 -NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--F----SPE------- 223 (620)
Q Consensus 158 -~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~--f----~~e------- 223 (620)
..+.+.+++++ |...|.+=.|. +. ..++..+.||+++..+++|++|+..|+. |+ . +.|
T Consensus 86 ~~~e~i~~ai~~----GftSVMiDgS~--l~-~~~~~~p~eENI~~Tkevve~Ah~~Gv~-VEaELG~vgg~e~~~~g~~ 157 (347)
T PRK09196 86 NSPATCQRAIQL----GFTSVMMDGSL--KA-DGKTPASYEYNVDVTRKVVEMAHACGVS-VEGELGCLGSLETGMGGEE 157 (347)
T ss_pred CCHHHHHHHHHc----CCCEEEecCCC--Cc-ccCCCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeccCccccccccc
Confidence 34455555554 88887543321 10 1233457899999999999999999974 43 2 122
Q ss_pred C-----------CCCCCHHHHHHHHHHHHHcCCcEEeec--CCcccc----CHH---HHHHHHHHHHHhCCCCCceeEEE
Q 007056 224 D-----------AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MPT---EFGKLIADIKANTPGIENVVIST 283 (620)
Q Consensus 224 d-----------~~r~d~e~l~~~~~~~~~aGa~~I~L~--DTvG~~----~P~---~v~~li~~l~~~~~~~~~v~i~~ 283 (620)
| ...|+|+.+.++++ +-|+|.+-++ -.=|.. .|. ==.++++.|++.++ ++||.+
T Consensus 158 ~~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~---~vPLVL 231 (347)
T PRK09196 158 DGHGAEGKLSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP---NTHLVM 231 (347)
T ss_pred cCcccccccchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC---CCCEEE
Confidence 1 22678887776665 5677755443 222322 242 12346688888875 378999
Q ss_pred ecCCCc-------------------chHHHHHHHHHHhcCcEEe
Q 007056 284 HCQNDL-------------------GLSTANTIAGACAGARQVE 308 (620)
Q Consensus 284 H~HND~-------------------GlAvANslaAv~aGA~~Vd 308 (620)
|.=... |....+-..|++.|+.-|+
T Consensus 232 HGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KIN 275 (347)
T PRK09196 232 HGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVN 275 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEE
Confidence 987655 6677788888888888774
No 120
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.10 E-value=1.9 Score=43.85 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.++-+++++.|.+.|++.||+.| .+|.-.+.++.+.+......+ + ..+-+=+-.+.++.+.++++ |.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~--~tp~a~~~i~~l~~~~~~~~p-~----~~vGaGTVl~~e~a~~a~~a----GA 92 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN--RGDFAHEVFAELVKYAAKELP-G----MILGVGSIVDAATAALYIQL----GA 92 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCCcHHHHHHHHHHHHHhhCC-C----eEEeeEeCcCHHHHHHHHHc----CC
Confidence 4789999999999999999999988 355556677777643322111 1 12222233467777777665 76
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee--cC
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 252 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L--~D 252 (620)
+-+ +.|..+ .+.+++++++|+. +-|- -.+|..+ ..+.++|++.+-| ++
T Consensus 93 ~Fi--VsP~~~------------------~~v~~~~~~~~i~---~iPG---~~TpsEi----~~A~~~Ga~~vKlFPA~ 142 (222)
T PRK07114 93 NFI--VTPLFN------------------PDIAKVCNRRKVP---YSPG---CGSLSEI----GYAEELGCEIVKLFPGS 142 (222)
T ss_pred CEE--ECCCCC------------------HHHHHHHHHcCCC---EeCC---CCCHHHH----HHHHHCCCCEEEECccc
Confidence 643 223221 2678899999875 2231 1233322 3456899998765 35
Q ss_pred CccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHH--HHHHHHHHhcCcEE
Q 007056 253 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST--ANTIAGACAGARQV 307 (620)
Q Consensus 253 TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv--ANslaAv~aGA~~V 307 (620)
+.| |. .++.|+.=+|+.+ +- -.-|... .|.-.-+.+|+..|
T Consensus 143 ~~G---~~----~ikal~~p~p~i~---~~----ptGGV~~~~~n~~~yl~aGa~av 185 (222)
T PRK07114 143 VYG---PG----FVKAIKGPMPWTK---IM----PTGGVEPTEENLKKWFGAGVTCV 185 (222)
T ss_pred ccC---HH----HHHHHhccCCCCe---EE----eCCCCCcchhcHHHHHhCCCEEE
Confidence 444 43 5666676666532 22 2456655 68888888998765
No 121
>PRK12928 lipoyl synthase; Provisional
Probab=94.08 E-value=1.2 Score=47.10 Aligned_cols=167 Identities=16% Similarity=0.089 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCC--Ch----hH-HHHHHHHHHHhcccccccCCccceEEeecccchhhHHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA--SK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 164 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~--s~----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 164 (620)
...++.++-++.++.+.+.|+++|-+..-.. .+ .. .+.++.|.+..+. ..|..+.......+..
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~---------~~I~~ltp~~~~~~~e 154 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPG---------TGIEVLTPDFWGGQRE 154 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCC---------CEEEEeccccccCCHH
Confidence 4579999999999999999999887743211 11 11 2444555443111 1344443311110344
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CCEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG--CDDVEFSPEDAGRSDRKFLYEILGEVIK 242 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G--~~~V~f~~ed~~r~d~e~l~~~~~~~~~ 242 (620)
.++.++.+|...+...+-+++ .+..+++.. ...+...+.++.+++.| +. +.-+..-+.--+.+.+.+.++.+.+
T Consensus 155 ~L~~l~~Ag~~i~~hnlEt~~-~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~-~~s~iIvG~GET~ed~~etl~~Lre 230 (290)
T PRK12928 155 RLATVLAAKPDVFNHNLETVP-RLQKAVRRG--ADYQRSLDLLARAKELAPDIP-TKSGLMLGLGETEDEVIETLRDLRA 230 (290)
T ss_pred HHHHHHHcCchhhcccCcCcH-HHHHHhCCC--CCHHHHHHHHHHHHHhCCCce-ecccEEEeCCCCHHHHHHHHHHHHh
Confidence 566677778777666666665 333444432 33455667888899988 43 2212222223455778899999999
Q ss_pred cCCcEEeec----------CCccccCHHHHHHHHHHHHH
Q 007056 243 VGATTLNIP----------DTVGITMPTEFGKLIADIKA 271 (620)
Q Consensus 243 aGa~~I~L~----------DTvG~~~P~~v~~li~~l~~ 271 (620)
.|.+.+.+- --..+.+|+++..+=..-.+
T Consensus 231 l~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 231 VGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARE 269 (290)
T ss_pred cCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHH
Confidence 999988872 23467789888876555443
No 122
>PRK08185 hypothetical protein; Provisional
Probab=94.06 E-value=9.3 Score=40.32 Aligned_cols=182 Identities=17% Similarity=0.165 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH-HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWEA 168 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ea 168 (620)
.++.+.-..+++.-.+++.+.|=-.+|... +.+ ...++.+++.. -+|...-|--+ ..++++.+++.
T Consensus 20 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~---------~vPV~lHLDHg~~~e~i~~ai~~ 90 (283)
T PRK08185 20 VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRS---------PVPFVIHLDHGATIEDVMRAIRC 90 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999998866555432 222 23445555432 13544444444 34566666654
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC--------CCCCHHHHH
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFLY 234 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~--------~r~d~e~l~ 234 (620)
|...|.+=.+ ..+.+|+++..++.+++|+..|.. |+- ..++. ..++|+.+.
T Consensus 91 ----Gf~SVM~D~S----------~l~~eeNi~~t~~vv~~a~~~gv~-vE~ElG~vg~~e~~~~~~~~~~~~t~peea~ 155 (283)
T PRK08185 91 ----GFTSVMIDGS----------LLPYEENVALTKEVVELAHKVGVS-VEGELGTIGNTGTSIEGGVSEIIYTDPEQAE 155 (283)
T ss_pred ----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeccCcccccccccccccCCCHHHHH
Confidence 8877654222 257899999999999999999874 321 11111 155777665
Q ss_pred HHHHHHHHcCCcEEeec-CCcccc-----CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 235 EILGEVIKVGATTLNIP-DTVGIT-----MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~-DTvG~~-----~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
++++ +-|+|.+-++ -|++.. .|.---++++.+++.+ ++||..|+--.. ..-.-..|+..|+.-|+
T Consensus 156 ~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~----~iPLVlHGgsg~--~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 156 DFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV----DIPLVLHGGSAN--PDAEIAESVQLGVGKIN 226 (283)
T ss_pred HHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh----CCCEEEECCCCC--CHHHHHHHHHCCCeEEE
Confidence 5554 3488877762 233333 2333466788888776 378988876544 46778889999988774
No 123
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.00 E-value=5.8 Score=39.61 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChh-H-----------------HHHHHHHHHHhcccccccCCccceEEeeccc
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D-----------------FEAVRTIAKEVGNAVDAESGYVPVICGLSRC 157 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d-----------------~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 157 (620)
+.++-.+|.+.|+..|.|+||.|.|.+.|- | ++.+-.+.++..+. |...-|.-++-.
T Consensus 30 ~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~-----gvt~PIiLmgYY 104 (268)
T KOG4175|consen 30 DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ-----GVTCPIILMGYY 104 (268)
T ss_pred cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhccc-----Ccccceeeeecc
Confidence 567889999999999999999999865441 1 11111112221111 221112222222
Q ss_pred c---hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH
Q 007056 158 N---ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 234 (620)
Q Consensus 158 ~---~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~ 234 (620)
+ ..+.+..++..+.+|+..+-+.. ..+| .+...-.+++++|+.-|-.-+ .+.++.=+
T Consensus 105 NPIl~yG~e~~iq~ak~aGanGfiivD------------lPpE----Ea~~~Rne~~k~gislvpLva----PsTtdeRm 164 (268)
T KOG4175|consen 105 NPILRYGVENYIQVAKNAGANGFIIVD------------LPPE----EAETLRNEARKHGISLVPLVA----PSTTDERM 164 (268)
T ss_pred cHHHhhhHHHHHHHHHhcCCCceEecc------------CChH----HHHHHHHHHHhcCceEEEeeC----CCChHHHH
Confidence 2 22344445555566776654432 1233 344556789999975333322 23334333
Q ss_pred HHHHHHHHcCCcEEeecCCccccC-----HHHHHHHHHHHHHhCCCCCceeEEE
Q 007056 235 EILGEVIKVGATTLNIPDTVGITM-----PTEFGKLIADIKANTPGIENVVIST 283 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~~~-----P~~v~~li~~l~~~~~~~~~v~i~~ 283 (620)
+++-.+.+ .-|++.-.+|..- -+.+..|+..+|+...+.+ +.++|
T Consensus 165 ell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtP-lAVGF 214 (268)
T KOG4175|consen 165 ELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTP-LAVGF 214 (268)
T ss_pred HHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCc-eeEee
Confidence 44433333 4566666666542 2346678888888765422 44443
No 124
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=94.00 E-value=7.5 Score=39.47 Aligned_cols=188 Identities=14% Similarity=0.074 Sum_probs=106.6
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecc--cc-hhhHHHHHHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR--CN-ERDIKTAWEA 168 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r--~~-~~dI~~a~ea 168 (620)
....|.++..++.+.-.+.|+..+-+ +| .+++...+.+.++- ..+..+.+|-. .. ..-+..+-++
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv-~p-------~~v~~a~~~l~~~~----v~v~tVigFP~G~~~~~~K~~e~~~A 83 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCV-NP-------SYVKLAAELLKGSD----VKVCTVIGFPLGANTTAVKAFEAKDA 83 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEE-CH-------HHHHHHHHHhCCCC----CeEEEEecccCCCChHHHHHHHHHHH
Confidence 34688999999999999999988887 34 24554444432220 11222333311 11 1111222233
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
+ ..|++.|.+++..+-+. .-..+++.+.+.+..+.+ .+. .+-+-.| ...-+.+.+.++++.+.++|+|.|
T Consensus 84 i-~~GA~EiD~Vin~~~~~-----~g~~~~v~~ei~~v~~~~--~~~-~lKvIlE-t~~L~~e~i~~a~~~~~~agadfI 153 (221)
T PRK00507 84 I-ANGADEIDMVINIGALK-----SGDWDAVEADIRAVVEAA--GGA-VLKVIIE-TCLLTDEEKVKACEIAKEAGADFV 153 (221)
T ss_pred H-HcCCceEeeeccHHHhc-----CCCHHHHHHHHHHHHHhc--CCc-eEEEEee-cCcCCHHHHHHHHHHHHHhCCCEE
Confidence 2 24889998887765321 123566666666665543 243 2333233 223456778999999999999966
Q ss_pred eecCCc--cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 249 NIPDTV--GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 249 ~L~DTv--G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
--.-+. |..+|+.++.+-+.+..+++ +..+==.++ ...++.-+++||++|-+|
T Consensus 154 KTsTG~~~~gat~~~v~~m~~~~~~~~~----IKasGGIrt-----~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 154 KTSTGFSTGGATVEDVKLMRETVGPRVG----VKASGGIRT-----LEDALAMIEAGATRLGTS 208 (221)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHhCCCce----EEeeCCcCC-----HHHHHHHHHcCcceEccC
Confidence 665554 45778777666555433221 222111111 566788889999998444
No 125
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.00 E-value=5.8 Score=41.40 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=55.8
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC-EEEEcCCCCC
Q 007056 149 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDAG 226 (620)
Q Consensus 149 ~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~-~V~f~~ed~~ 226 (620)
|.+.-+.-...+++..+.+.+..+|.+.|.+-+++-..- .+.+..+..+.+.+.++.+|+. ++. .|-.++
T Consensus 100 pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~----~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~---- 171 (289)
T cd02810 100 PLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVG----GGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP---- 171 (289)
T ss_pred eEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC----CCcccccCHHHHHHHHHHHHHccCCCEEEEeCC----
Confidence 344444334567777777777777888777655432211 1111112223344455555543 332 123344
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCc
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTV 254 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTv 254 (620)
-.+.+...++++.+.++|+|.|.+..|.
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 2456778899999999999999987664
No 126
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.88 E-value=7.9 Score=38.90 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhHcCCCEEEEe-cCCCChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 007056 98 KEKLDIARQLAKLGVDIIEAG-FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 175 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvG-fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~ 175 (620)
++-.++++.+.+.|.|.|++| +-...++.. +.++.+.+... .|.+. + ..+...+-+ ++|
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~---------lPvil-f-p~~~~~i~~--------~aD 71 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITN---------LPVIL-F-PGNVNGLSR--------YAD 71 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcC---------CCEEE-E-CCCccccCc--------CCC
Confidence 566779999999999999997 432333333 34555554211 13332 1 222222221 344
Q ss_pred EEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCC-----EEEEcCC----------CCCCCCHHHHHHHHHH
Q 007056 176 RIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCD-----DVEFSPE----------DAGRSDRKFLYEILGE 239 (620)
Q Consensus 176 ~v~i~~~~Sd~h~~~~l~-~t~ee~l~~~~~~v~~a~~~G~~-----~V~f~~e----------d~~r~d~e~l~~~~~~ 239 (620)
.+-+. + .|| ..++..+..-.+++-..|+.|.+ ++.+++. -.-+.+++.....+.+
T Consensus 72 ~~~~~-s--------llns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~a 142 (205)
T TIGR01769 72 AVFFM-S--------LLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLA 142 (205)
T ss_pred EEEEE-E--------eecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHH
Confidence 43221 1 111 23344455444555555777654 2334443 1223578999999999
Q ss_pred HHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 240 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 240 ~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
+...|.+.|+|-|..|...|-. .++++.+++.+. . .+.+++-.++ ...+..++.+||+.|
T Consensus 143 a~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~~-~-Pv~vGGGIrs-----~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 143 AKYFGMKWVYLEAGSGASYPVN-PETISLVKKASG-I-PLIVGGGIRS-----PEIAYEIVLAGADAI 202 (205)
T ss_pred HHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhhC-C-CEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 9999999999999988853322 566777776652 1 1445432222 234445557888876
No 127
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=93.81 E-value=7.9 Score=40.02 Aligned_cols=125 Identities=25% Similarity=0.351 Sum_probs=74.5
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCC--------ChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA--------SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~--------s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
+..++.+.-++.++.+.+.|.|+|++|.... ..++++.+..+.+.+.... . .| ..+--.+.+-++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~-~p--iSIDT~~~~v~~ 90 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----D-VP--ISVDTFNAEVAE 90 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----C-Ce--EEEeCCcHHHHH
Confidence 3447899999999999999999999996332 2345565555555442210 1 12 234445666677
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CC--------CC-----
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GR--------SD----- 229 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r--------~d----- 229 (620)
.+++. |.+.|+ ++|- .. .+ .++++.++++|+. +...+.+. +. .+
T Consensus 91 aaL~~----g~~iIN---dis~--------~~----~~--~~~~~l~~~~~~~-vV~m~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T cd00423 91 AALKA----GADIIN---DVSG--------GR----GD--PEMAPLAAEYGAP-VVLMHMDGTPQTMQNNPYYADVVDEV 148 (258)
T ss_pred HHHHh----CCCEEE---eCCC--------CC----CC--hHHHHHHHHcCCC-EEEECcCCCCcccccCCCcchHHHHH
Confidence 77665 556543 4331 00 00 2456677788876 44433221 11 11
Q ss_pred HHHHHHHHHHHHHcCC
Q 007056 230 RKFLYEILGEVIKVGA 245 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa 245 (620)
.+++.+.++.+.++|.
T Consensus 149 ~~~~~~~i~~~~~~Gi 164 (258)
T cd00423 149 VEFLEERVEAATEAGI 164 (258)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4788888888999995
No 128
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=93.76 E-value=4.6 Score=44.21 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
..++.++.+++++.+.+.|++.|-+ |=|...++-.+.++.+.+.. ++. .+...+ +--.+...++.++
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~--------gi~-~i~itT--NG~lL~~~~~~L~ 156 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLK--------GLK-TLAMTT--NGITLSRKLPRLK 156 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcC--------CCc-eEEEee--CcchHHHHHHHHH
Confidence 3589999999999999999998877 34654443335555544321 111 121111 1111233356677
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE--E
Q 007056 171 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT--L 248 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~--I 248 (620)
.+|+++|.+.+-+.+-....++... ..++.+.+.++.+++.|...|.++..-....+.+.+.++++.+.+.|+.. |
T Consensus 157 ~aGld~VnISLDsl~~e~~~~itr~--~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~vr~i 234 (373)
T PLN02951 157 EAGLTSLNISLDTLVPAKFEFLTRR--KGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINVRFI 234 (373)
T ss_pred hCCCCeEEEeeccCCHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 7899999887765432222233211 12467778888889888643444332112356677899999999988653 3
Q ss_pred eecCCcccc--C--HHHHHHHHHHHHHhCC
Q 007056 249 NIPDTVGIT--M--PTEFGKLIADIKANTP 274 (620)
Q Consensus 249 ~L~DTvG~~--~--P~~v~~li~~l~~~~~ 274 (620)
.+--.-|.. . +....++.+.+.+.++
T Consensus 235 e~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 235 EFMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred EcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 232222221 1 1125666677766654
No 129
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.45 E-value=0.7 Score=47.75 Aligned_cols=169 Identities=20% Similarity=0.307 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEe--cCCCChhHH-----HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHH
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAG--FPAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 168 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 168 (620)
+.|+.+.+|+.+.+.|.+.+=.| .|..||-+| +.++.+++.- ++.|+. .+.= -.+.+|++.+.+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~-----~~~Gl~-vvtE--vm~~~~~e~~~~y 128 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAA-----DETGLP-VVTE--VMDVRDVEAAAEY 128 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHH-----HHcCCe-eEEE--ecCHHHHHHHHhh
Confidence 67889999999999999999998 499999776 3444443321 111332 1211 1356777766442
Q ss_pred --HhcCCCCEEEEEe---cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCCCC----------
Q 007056 169 --VKYAKRPRIHTFI---ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGR---------- 227 (620)
Q Consensus 169 --l~~ag~~~v~i~~---~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~~r---------- 227 (620)
+...|....+-|. .....+.-.-|++.....++....+.+|+.+.|...|.. ..|-.+|
T Consensus 129 ~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~ 208 (286)
T COG2876 129 ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPI 208 (286)
T ss_pred hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHH
Confidence 0011211111110 000000001122333344445556788988887542211 1111111
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCcEE----------eecCCccccCHHHHHHHHHHHHHh
Q 007056 228 -----------------SDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 228 -----------------~d~e~l~~~~~~~~~aGa~~I----------~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
-..+++..++++++.+|||.| .|+|.--.++|+++.+++..++.-
T Consensus 209 ~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~ 280 (286)
T COG2876 209 LKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRAL 280 (286)
T ss_pred HHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 134788899999999999865 467999999999999999999863
No 130
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.43 E-value=3.7 Score=44.75 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----H---HHHHHHHHhcccccccCCccceEEeecccchhhHHHH
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----E---AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 165 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e---~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 165 (620)
+.++-+++|+.|.+.|++++=.|+ |..+|..| + .++..++.. |+. .++. -....+++.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~--------Gl~-~~t~--v~d~~~~~~l 198 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEY--------GLA-VISE--IVNPADVEVA 198 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHc--------CCC-EEEe--eCCHHHHHHH
Confidence 688899999999999999998874 66666432 3 344444432 221 2211 1234455544
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCC
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa 245 (620)
.+ . ++.+.| ++.+... .+.++++.+.|.. |.++- +.-.+++.+...++.+.+.|.
T Consensus 199 ~~----~-vd~lkI--~s~~~~n---------------~~LL~~~a~~gkP-Vilk~--G~~~t~~e~~~Ave~i~~~Gn 253 (360)
T PRK12595 199 LD----Y-VDVIQI--GARNMQN---------------FELLKAAGRVNKP-VLLKR--GLSATIEEFIYAAEYIMSQGN 253 (360)
T ss_pred HH----h-CCeEEE--CcccccC---------------HHHHHHHHccCCc-EEEeC--CCCCCHHHHHHHHHHHHHCCC
Confidence 33 2 455443 4333221 2566667778875 77753 223677888888888888999
Q ss_pred cEEeecC--CccccCH--HHH-HHHHHHHHHhCCCCCceeEEE-ecCCCcc---hHHHHHHHHHHhcCc--EEeecc
Q 007056 246 TTLNIPD--TVGITMP--TEF-GKLIADIKANTPGIENVVIST-HCQNDLG---LSTANTIAGACAGAR--QVEVTI 311 (620)
Q Consensus 246 ~~I~L~D--TvG~~~P--~~v-~~li~~l~~~~~~~~~v~i~~-H~HND~G---lAvANslaAv~aGA~--~Vd~Ti 311 (620)
..|.||. |..+-+| +.+ -..|..+++.+. +||++ =.|- .| +...-+++|+..||+ .|+.=+
T Consensus 254 ~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~----~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 254 GQIILCERGIRTYEKATRNTLDISAVPILKQETH----LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhC----CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 8899997 2222112 211 124456676552 45666 3443 55 777799999999996 566554
No 131
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=93.39 E-value=6.9 Score=38.94 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCc-cceEEeecccc---hhhHHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGLSRCN---ERDIKTAWEAV 169 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~---~~dI~~a~eal 169 (620)
..+.++-.++.+...+.|++.+-+ + |. +++...+.+.+. .+ +....+|-... ..-+..+-+++
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v-~----p~---~v~~~~~~l~~~-----~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCV-N----PC---FVPLAREALKGS-----GVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-c----HH---HHHHHHHHcCCC-----CcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 458999999999999999999887 2 32 344333332221 11 11122222211 11111122333
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 249 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~ 249 (620)
+ .|++.|.+++....+ .....+++++.+.+.++.+. |.. +-.-.|.. ..+++.+...++.+.++|||.|-
T Consensus 80 ~-~GAdevdvv~~~g~~-----~~~~~~~~~~ei~~v~~~~~--g~~-lkvI~e~~-~l~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 80 A-DGADEIDMVINIGAL-----KSGDYEAVYEEIAAVVEACG--GAP-LKVILETG-LLTDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred H-cCCCEEEEeecHHHH-----hCCCHHHHHHHHHHHHHhcC--CCe-EEEEEecC-CCCHHHHHHHHHHHHHhCCCEEE
Confidence 2 489998887765421 12344667888888888776 543 32222222 23578999999999999999988
Q ss_pred ec--CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 250 IP--DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 250 L~--DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
.. =+.+.++|..+..+-+.++..+| +.+.==.+ + ...++.-+++||+++-+
T Consensus 150 TsTG~~~~~at~~~v~~~~~~~~~~v~----ik~aGGik-t----~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 150 TSTGFGPGGATVEDVKLMKEAVGGRVG----VKAAGGIR-T----LEDALAMIEAGATRIGT 202 (203)
T ss_pred cCCCCCCCCCCHHHHHHHHHHhCCCce----EEEeCCCC-C----HHHHHHHHHhChhhccC
Confidence 76 22244677877766666652221 33332122 3 45667777788887643
No 132
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.39 E-value=1.8 Score=45.58 Aligned_cols=164 Identities=11% Similarity=-0.031 Sum_probs=103.2
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHH---H---hCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC-CCCC--CC
Q 007056 158 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEH---K---LRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG--RS 228 (620)
Q Consensus 158 ~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~---~---l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~-ed~~--r~ 228 (620)
+...+.+.++.+..+|+..|++-..+++-++-+ + .=.+.+|..++++.+++... +.+ +...+ -|+. ..
T Consensus 90 ~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~-~~IiARTDa~~~~~ 166 (285)
T TIGR02320 90 NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TED-FMIIARVESLILGK 166 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCC-eEEEEecccccccC
Confidence 556677777777788999999866554433221 1 11477888887766554422 323 22211 1332 23
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 229 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 229 d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
..+..++-+++..++|||.|.++ .+..+++++.++++.+...+|+ +|+-+.. ...+.= ..-.--+.|+++|-
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~---~pl~~~~-~~~~~~--~~~eL~~lG~~~v~ 238 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPR---TPLVIVP-TSYYTT--PTDEFRDAGISVVI 238 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCC---CCEEEec-CCCCCC--CHHHHHHcCCCEEE
Confidence 57888899999999999999997 3357899999999999877764 4453332 222221 23445567999974
Q ss_pred eccccccCCcCcccHHHHHHHHHhcc
Q 007056 309 VTINGIGERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 309 ~Ti~GlGERaGNa~lEevv~~L~~~~ 334 (620)
....- -|+-...+++.+..+...|
T Consensus 239 ~~~~~--~~aa~~a~~~~~~~~~~~g 262 (285)
T TIGR02320 239 YANHL--LRAAYAAMQQVAERILEHG 262 (285)
T ss_pred EhHHH--HHHHHHHHHHHHHHHHHcC
Confidence 43322 3666677777777776543
No 133
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=93.39 E-value=3.6 Score=41.44 Aligned_cols=160 Identities=21% Similarity=0.166 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcc----cccccCCc--------cceEEeeccc----
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGN----AVDAESGY--------VPVICGLSRC---- 157 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~----~~~~~~~l--------~~~i~~~~r~---- 157 (620)
.-|.|+-++-.+...+.--..+-+|--+-.|..|..+-.|+..... .+....++ -..+-+|.+.
T Consensus 37 y~tve~av~~mk~y~~~~~~avSVGLGaGdp~Q~~~Va~Ia~~~~P~HVNQvFtgag~sr~~Lg~~~T~vN~LvsPTG~~ 116 (236)
T TIGR03581 37 YPTVEEAIEDMKKYQKEIDNAVSVGLGAGDPNQSAMVADISAHTQPQHINQVFTGVGTSRALLGQADTVINGLVSPTGTP 116 (236)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHHHcCCccccccccchHHHHHHhCCccceEEEeecCCCcc
Confidence 3466777777777766655558888777778888888888875421 11100000 0011111111
Q ss_pred ------------c----hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc
Q 007056 158 ------------N----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS 221 (620)
Q Consensus 158 ------------~----~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~ 221 (620)
. .-.++.|+..+++.|...|.+|-=- | ...++.+...++.|.++|+.
T Consensus 117 G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~---------G---l~~leE~~avA~aca~~g~~----- 179 (236)
T TIGR03581 117 GLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMG---------G---LKHLEEYAAVAKACAKHGFY----- 179 (236)
T ss_pred ceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecC---------C---cccHHHHHHHHHHHHHcCCc-----
Confidence 0 1246778888888888888776211 1 12244555566666667752
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEE-------eecCCccccCHHHHHHHHHHHH
Q 007056 222 PEDAGRSDRKFLYEILGEVIKVGATTL-------NIPDTVGITMPTEFGKLIADIK 270 (620)
Q Consensus 222 ~ed~~r~d~e~l~~~~~~~~~aGa~~I-------~L~DTvG~~~P~~v~~li~~l~ 270 (620)
.|-.+-.|.+.+.++++.+.++|+..| .|=-..|...|+++.+++..++
T Consensus 180 lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 180 LEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 255777888888899999999987543 2334678888999998888765
No 134
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=93.28 E-value=9.3 Score=40.17 Aligned_cols=183 Identities=19% Similarity=0.138 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH--HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+.+.+.|=--+|... +-+ ...++.+++.. -+|...-|--+ ..++|.+|++
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~---------~VPV~lHLDH~~~~~~i~~ai~ 90 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA---------SVPVALHLDHGSSFELIKRAIR 90 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 467788899999999999997644344321 111 23444554432 13444434333 2466666665
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCC------CCCCCHHHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED------AGRSDRKFLYE 235 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed------~~r~d~e~l~~ 235 (620)
+ |...|.+=. | ..+.+|+++..++.+++|+..|+. |+- +.|| ...|+|+.+.+
T Consensus 91 ~----GftSVMiD~--S--------~l~~eeNi~~t~~vv~~ah~~gv~-VEaElG~i~g~e~~~~~~~~~~T~pe~a~~ 155 (276)
T cd00947 91 A----GFSSVMIDG--S--------HLPFEENVAKTKEVVELAHAYGVS-VEAELGRIGGEEDGVVGDEGLLTDPEEAEE 155 (276)
T ss_pred h----CCCEEEeCC--C--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeecCccCCcccccccCCCHHHHHH
Confidence 4 888875432 2 246899999999999999999974 432 2222 23678888877
Q ss_pred HHHHHHHcCCcEEeec--CCcccc---CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 236 ILGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~--DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
+++. -|+|.+-++ -.=|.- .|.-=.++++.+++.++ +||.+|+ ..|+.--+-..|++.|+.-|+.
T Consensus 156 Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~----vPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 156 FVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN----VPLVLHG--GSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred HHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEEe
Confidence 7764 588865443 222322 45555568888888773 7788776 4577778888999999888743
No 135
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=93.08 E-value=3.2 Score=44.29 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=77.4
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
...|+.++..++++.+.+.|+..|-+ |=|-..++=.+.++.+.+..+ . ..+...+... -+...++.+
T Consensus 46 ~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~--------~-~~i~itTNG~--ll~~~~~~L 114 (331)
T PRK00164 46 EELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPG--------I-RDLALTTNGY--LLARRAAAL 114 (331)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCC--------C-ceEEEEcCch--hHHHHHHHH
Confidence 34689999999999999999998877 346555443455555543210 1 1222222221 123345566
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~ 246 (620)
+.+|.++|.+.+-+.+-....+++. ...++.+.+.++.+++.|...|.+...-....+.+.+.++++.+.+.|++
T Consensus 115 ~~agl~~i~ISlds~~~e~~~~i~~--~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 115 KDAGLDRVNVSLDSLDPERFKAITG--RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred HHcCCCEEEEEeccCCHHHhccCCC--CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe
Confidence 7778888887665433222222221 23456666777777777752243322111122335556666666666653
No 136
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=92.90 E-value=4 Score=43.77 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
.+|.|+...+++...++||+.|=+ |=|-- ..|+ +.++.+++. + .. .++- + +|---+..-.+.|+
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-R~dl~eIi~~l~~~-~---~~------~isl-T-TNG~~L~~~a~~Lk 108 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-RKDLDEIIARLARL-G---IR------DLSL-T-TNGVLLARRAADLK 108 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCCCchh-hcCHHHHHHHHhhc-c---cc------eEEE-e-cchhhHHHHHHHHH
Confidence 689999999999999999998877 34643 2333 555665543 1 01 1111 0 12112233345678
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc--EE
Q 007056 171 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT--TL 248 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~--~I 248 (620)
.||.++|++.+-+-|-....++. ....++.+.+.++.|.+.|+..|-.+..-.-..+.+.+.++++.+.+-|+. -|
T Consensus 109 ~AGl~rVNVSLDsld~e~f~~IT--~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfI 186 (322)
T COG2896 109 EAGLDRVNVSLDSLDPEKFRKIT--GRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFI 186 (322)
T ss_pred HcCCcEEEeecccCCHHHHHHHh--CCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEE
Confidence 89999999987666655555543 223378888999999999986565544322236778888888888888863 34
Q ss_pred eecCCc
Q 007056 249 NIPDTV 254 (620)
Q Consensus 249 ~L~DTv 254 (620)
-+-|+-
T Consensus 187 E~m~~g 192 (322)
T COG2896 187 ELMPLG 192 (322)
T ss_pred EEeecC
Confidence 444443
No 137
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=92.89 E-value=0.089 Score=51.12 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=88.4
Q ss_pred HHHHhHcCCCEEEEecCCCCh-----hHHHHHHHHHHHhcccccccCCccceEEeecc----------cc------hhhH
Q 007056 104 ARQLAKLGVDIIEAGFPAASK-----EDFEAVRTIAKEVGNAVDAESGYVPVICGLSR----------CN------ERDI 162 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGfP~~s~-----~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r----------~~------~~dI 162 (620)
++.+.++|++.||+.++...+ .+.+.++++.+..+-.+ ..+....+ .+ .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i-------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKI-------ASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEE-------EEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeE-------EEEecccccccccccccCcchhhHHHHHHH
Confidence 367889999999998643222 24556666665432211 11111111 11 3345
Q ss_pred HHHHHHHhcCCCCEEEEEec---C-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCC----CCHHHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIA---T-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR----SDRKFLY 234 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~---~-Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r----~d~e~l~ 234 (620)
+.+++..+..|.+.+.+... . .+...+ ...+...+.+.+++++|++.|+. +.+-+..... .+.+.+.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~----~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE----ENWERLAENLRELAEIAEEYGVR-IALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHH----HHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHH----HHHHHHHHHHHHHHhhhhhhcce-EEEecccCccccchhhHHHHH
Confidence 55666666668888877754 1 111111 22455666777788888899974 5552221111 1225555
Q ss_pred HHHHHHHHcCCcEEeec-CCccccC-HHHHHHHHHHHHHhCCCCCceeEEEecCCCcc
Q 007056 235 EILGEVIKVGATTLNIP-DTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLG 290 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~-DTvG~~~-P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G 290 (620)
++++. .+-+.+.++ ||.-... .....+.++.+... ...+|.+|..+
T Consensus 149 ~~l~~---~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~-------i~~vHi~D~~~ 196 (213)
T PF01261_consen 149 RLLEE---VDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR-------IKHVHIKDANG 196 (213)
T ss_dssp HHHHH---HTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG-------EEEEEE-EESS
T ss_pred HHHhh---cCCCcceEEEehHHHHHcCCCHHHHHHHhhcc-------eeEEEEeCCCC
Confidence 55554 454435544 5533221 24556666666654 36899998877
No 138
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.86 E-value=1.7 Score=46.69 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=92.2
Q ss_pred HHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecC
Q 007056 104 ARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIAT 183 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~ 183 (620)
++.|.++|++.|-+|+.- -..+.+++.+++.. .|.+..-+.+..++|+.|++.+...|.+.|.+.=.+
T Consensus 103 vd~l~~~~v~~~KI~S~~--~~n~~LL~~va~~g----------kPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~ 170 (327)
T TIGR03586 103 VDFLESLDVPAYKIASFE--ITDLPLIRYVAKTG----------KPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCT 170 (327)
T ss_pred HHHHHHcCCCEEEECCcc--ccCHHHHHHHHhcC----------CcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecC
Confidence 456667777777776543 24577888887741 267777788899999999999988887656553222
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE--------ee--cC
Q 007056 184 SGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL--------NI--PD 252 (620)
Q Consensus 184 Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~-~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I--------~L--~D 252 (620)
|. +-.+++ .++ ...+..+++ .++. |-|+ | +... ..+..+++.+||+.| .+ +|
T Consensus 171 s~------YP~~~~-~~n--L~~i~~lk~~f~~p-VG~S--D---Ht~G--~~~~~aAva~GA~iIEkH~tld~~l~G~D 233 (327)
T TIGR03586 171 SS------YPAPLE-DAN--LRTIPDLAERFNVP-VGLS--D---HTLG--ILAPVAAVALGACVIEKHFTLDRSDGGVD 233 (327)
T ss_pred CC------CCCCcc-cCC--HHHHHHHHHHhCCC-EEee--C---CCCc--hHHHHHHHHcCCCEEEeCCChhhcCCCCC
Confidence 22 222222 222 234555554 4554 6674 2 2222 267778889999754 24 68
Q ss_pred CccccCHHHHHHHHHHHHHh
Q 007056 253 TVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 253 TvG~~~P~~v~~li~~l~~~ 272 (620)
-.=.++|.++.++++.+++-
T Consensus 234 ~~~Sl~p~e~~~lv~~ir~~ 253 (327)
T TIGR03586 234 SAFSLEPDEFKALVKEVRNA 253 (327)
T ss_pred hhccCCHHHHHHHHHHHHHH
Confidence 88889999999999999863
No 139
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.84 E-value=13 Score=38.47 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+..+.-.++++.|.+.|++-|=+. ++.-+.+|+ +.++..++... +.++.+++.+....++.-...+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-------~~~~vi~gv~~~~~~~~i~~a~ 86 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-------GRVPVIAGVGANSTREAIELAR 86 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-------CCCeEEEecCCccHHHHHHHHH
Confidence 5788889999999999999998763 244455554 44455555432 2346777877655554433334
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC--CCCCCHHHHHHHHHHHHHcCC
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed--~~r~d~e~l~~~~~~~~~aGa 245 (620)
....+|++.+-+.-|.. +..+.+++++-..+.++. .++.-+.|+... +...+++.+.++++ ..
T Consensus 87 ~a~~~Gad~v~v~pP~y-------~~~~~~~~~~~~~~ia~~---~~~pi~iYn~P~~tg~~l~~~~~~~L~~-----~~ 151 (281)
T cd00408 87 HAEEAGADGVLVVPPYY-------NKPSQEGIVAHFKAVADA---SDLPVILYNIPGRTGVDLSPETIARLAE-----HP 151 (281)
T ss_pred HHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEECccccCCCCCHHHHHHHhc-----CC
Confidence 44667999887755532 235667766665555553 345545665544 34556676665543 45
Q ss_pred cEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHH
Q 007056 246 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 325 (620)
Q Consensus 246 ~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEe 325 (620)
..+.+.||.| .+..+.++++.. ++ + +.+-+=+| ...+.++..|++ +++.|+ +|.--+.
T Consensus 152 ~v~giK~s~~--d~~~~~~~~~~~----~~--~--~~v~~G~d-----~~~~~~l~~G~~---G~i~~~----~n~~p~~ 209 (281)
T cd00408 152 NIVGIKDSSG--DLDRLTRLIALL----GP--D--FAVLSGDD-----DLLLPALALGAD---GAISGA----ANVAPKL 209 (281)
T ss_pred CEEEEEeCCC--CHHHHHHHHHhc----CC--C--eEEEEcch-----HHHHHHHHcCCC---EEEehH----HhhCHHH
Confidence 8899999984 556666665533 22 1 22222222 455677888984 445553 5777777
Q ss_pred HHHHHHh
Q 007056 326 VVMAFKC 332 (620)
Q Consensus 326 vv~~L~~ 332 (620)
++...+.
T Consensus 210 ~~~~~~~ 216 (281)
T cd00408 210 AVALYEA 216 (281)
T ss_pred HHHHHHH
Confidence 7666654
No 140
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=92.77 E-value=5.5 Score=43.63 Aligned_cols=231 Identities=21% Similarity=0.109 Sum_probs=135.6
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEE--e-cCCCChh-HHHHHHHHHHHhcccccccCCccc-eEEeecccchhhHHHH
Q 007056 91 PGATLTSKEKLDIARQLAKLGVDIIEA--G-FPAASKE-DFEAVRTIAKEVGNAVDAESGYVP-VICGLSRCNERDIKTA 165 (620)
Q Consensus 91 ~g~~fs~~~Kl~Ia~~L~~~Gvd~IEv--G-fP~~s~~-d~e~v~~i~~~~~~~~~~~~~l~~-~i~~~~r~~~~dI~~a 165 (620)
.+..|+.++.++.++.+.+.|+..|=+ | .|..+.. ..+.++.|.+..++- . ...+.+ .+.-+++.....++..
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~-~-i~a~s~~ei~~~~~~~~~s~~E~ 163 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDL-H-IHALSAGEILFLAREGGLSYEEV 163 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcch-h-hcccCHHHhHHHHhccCCCHHHH
Confidence 567899999999999999999998766 3 2544432 124555555532210 0 001211 1222233333345666
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHH------hCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHK------LRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 239 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~------l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~ 239 (620)
++.|+++|.+.+- ....+++.+.. -+++.++-++ +.+.|.++|+..+.... .+.--+++...+-+..
T Consensus 164 l~~Lk~aGldsmp--g~~aeil~e~vr~~~~p~K~~~~~wle----~~~~Ah~lGI~~tatml-~Gh~E~~ed~~~hl~~ 236 (370)
T COG1060 164 LKRLKEAGLDSMP--GGGAEILSEEVRKIHCPPKKSPEEWLE----IHERAHRLGIPTTATML-LGHVETREDRIDHLEH 236 (370)
T ss_pred HHHHHHcCCCcCc--CcceeechHHHHHhhCCCCCCHHHHHH----HHHHHHHcCCCccceeE-EEecCCHHHHHHHHHH
Confidence 7778888988753 44555666442 2456666554 67888999987432211 1222224444444443
Q ss_pred HHHc-----CCcEEeec-----CC------ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhc
Q 007056 240 VIKV-----GATTLNIP-----DT------VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 303 (620)
Q Consensus 240 ~~~a-----Ga~~I~L~-----DT------vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 303 (620)
+.+. |...+.+. .| ..-..+.++-..|+..|-.++. .|...-=-.+-+++.=+.+|+.+|
T Consensus 237 ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~----~i~~~~a~w~~~g~~~~~~~l~~G 312 (370)
T COG1060 237 IRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN----NISNIQASWLRDGVILAQAALLSG 312 (370)
T ss_pred HHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC----ccccccCcccccchHHHHHHHHhC
Confidence 3332 33333222 22 1225667777777776665652 133233344667777789999999
Q ss_pred CcEEeecccc--ccCCcC-----cccHHHHHHHHHhcc
Q 007056 304 ARQVEVTING--IGERAG-----NASLEEVVMAFKCRG 334 (620)
Q Consensus 304 A~~Vd~Ti~G--lGERaG-----Na~lEevv~~L~~~~ 334 (620)
|+-+.+|+.. +=-.+| +.+.|+++..+...|
T Consensus 313 anD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG 350 (370)
T COG1060 313 ANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAG 350 (370)
T ss_pred cccCcCCCcccccccccccccCCCCCHHHHHHHHHHcC
Confidence 9999999887 212566 889999999998755
No 141
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=92.75 E-value=9.2 Score=40.33 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec----CCCCh----hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGF----PAASK----EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 164 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf----P~~s~----~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 164 (620)
..++.+..++-+..+.+.|.++|++|. |.+.+ +|++.+.-+.+.+.... . .+ | ..--.+.+-++.
T Consensus 33 ~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~----~-~~-I-SIDT~~~~va~~ 105 (282)
T PRK11613 33 THNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF----E-VW-I-SVDTSKPEVIRE 105 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----C-Ce-E-EEECCCHHHHHH
Confidence 446999999999999999999999995 43322 24444333333222110 0 11 2 222335555666
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-----CCC-CC---C-----H
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-----DAG-RS---D-----R 230 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-----d~~-r~---d-----~ 230 (620)
|+++ |++.|+-..+.++ ++.+ +.+++.|+. +...+. +.. +. + .
T Consensus 106 AL~~----GadiINDI~g~~d-----------~~~~-------~~~a~~~~~-vVlmh~~g~p~~~~~~~~y~dv~~~v~ 162 (282)
T PRK11613 106 SAKA----GAHIINDIRSLSE-----------PGAL-------EAAAETGLP-VCLMHMQGNPKTMQEAPKYDDVFAEVN 162 (282)
T ss_pred HHHc----CCCEEEECCCCCC-----------HHHH-------HHHHHcCCC-EEEEcCCCCCCccccCCCcccHHHHHH
Confidence 6654 8887754322211 1222 223556765 444332 111 11 1 2
Q ss_pred HHHHHHHHHHHHcCCc--EEeecCC-cccc-CHHHHHHHHHHHH
Q 007056 231 KFLYEILGEVIKVGAT--TLNIPDT-VGIT-MPTEFGKLIADIK 270 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~--~I~L~DT-vG~~-~P~~v~~li~~l~ 270 (620)
+|+.+.++.+.++|.. .|.+ |- .|.. ++++-.++++.+.
T Consensus 163 ~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 163 RYFIEQIARCEAAGIAKEKLLL-DPGFGFGKNLSHNYQLLARLA 205 (282)
T ss_pred HHHHHHHHHHHHcCCChhhEEE-eCCCCcCCCHHHHHHHHHHHH
Confidence 5777888888899985 3333 32 3442 3455555655553
No 142
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=92.70 E-value=13 Score=39.22 Aligned_cols=184 Identities=18% Similarity=0.160 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----hH-HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 166 (620)
.++.+.-..+++.-.+++.+.|=-.+|.... +. ...++.+++..+- -+|...=|-.+ ..++|.+|+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~-------~VPV~lHLDHg~~~e~i~~ai 97 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPY-------GVPVALHLDHGASEEDCAQAV 97 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccC-------CCcEEEECCCCCCHHHHHHHH
Confidence 4678999999999999999977555554322 11 1334444443200 13444333333 345666666
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCC--------CCCCCHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--------AGRSDRKF 232 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed--------~~r~d~e~ 232 (620)
++ |...|.+=.|. .+.+|+++..++.+++|+..|+. |+- +-|| ...|+|+.
T Consensus 98 ~~----GftSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~pee 162 (288)
T TIGR00167 98 KA----GFSSVMIDGSH----------EPFEENIELTKKVVERAHKMGVS-VEAELGTLGGEEDGVSVADESALYTDPEE 162 (288)
T ss_pred Hc----CCCEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCE-EEEEEeeccCccCCcccccccccCCCHHH
Confidence 54 88887543332 46799999999999999999974 432 2222 23678886
Q ss_pred HHHHHHHHHHcCCcEEeec--CCcccc--CHH-HHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 233 LYEILGEVIKVGATTLNIP--DTVGIT--MPT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~--DTvG~~--~P~-~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
+.++++ +-|+|.+-++ -.=|.- .|. ==.++++.|++.+ ++||.+|+= .|+.-.+-..|+..|+.-|
T Consensus 163 a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v----~vPLVlHGg--SG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 163 AKEFVK---LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV----NLPLVLHGG--SGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred HHHHHh---ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh----CCCEEEeCC--CCCCHHHHHHHHHcCCeEE
Confidence 666654 5688866554 222222 344 2245778888877 377887764 5777788889999998876
Q ss_pred e
Q 007056 308 E 308 (620)
Q Consensus 308 d 308 (620)
+
T Consensus 234 N 234 (288)
T TIGR00167 234 N 234 (288)
T ss_pred E
Confidence 3
No 143
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=92.69 E-value=8.9 Score=39.92 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.+..++.++.+.+.|.++|++|.-....++.+.+..+.+.+.... . .| + .+--.+.+-++.++++.+ |.
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~----~-~p-l-sIDT~~~~v~eaaL~~~~--G~ 92 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV----D-VP-L-CIDSPNPAAIEAGLKVAK--GP 92 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC----C-CC-E-EEeCCCHHHHHHHHHhCC--CC
Confidence 35677788899999999999999975433445665555554432110 1 12 2 233345566677776533 66
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC--CCCCC----HHHHHHHHHHHHHcCCc--
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSD----RKFLYEILGEVIKVGAT-- 246 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed--~~r~d----~e~l~~~~~~~~~aGa~-- 246 (620)
+.| .++|- .. +...++++.++++|+. +..-+.+ +...+ .+++.+.++.+.++|..
T Consensus 93 ~iI---NsIs~--------~~-----~~~~~~~~l~~~~g~~-vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~ 155 (261)
T PRK07535 93 PLI---NSVSA--------EG-----EKLEVVLPLVKKYNAP-VVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPE 155 (261)
T ss_pred CEE---EeCCC--------CC-----ccCHHHHHHHHHhCCC-EEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHh
Confidence 654 34431 00 1122455667778886 4332222 21111 46777888888999983
Q ss_pred EEeecCCcc---cc--CHHHHHHHHHHHHHhCCC
Q 007056 247 TLNIPDTVG---IT--MPTEFGKLIADIKANTPG 275 (620)
Q Consensus 247 ~I~L~DTvG---~~--~P~~v~~li~~l~~~~~~ 275 (620)
.|.|==-+| .. ...++-+.++.+++.+|+
T Consensus 156 ~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg 189 (261)
T PRK07535 156 DIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPK 189 (261)
T ss_pred HEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCC
Confidence 444422233 21 134446667777877764
No 144
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=92.63 E-value=12 Score=37.68 Aligned_cols=188 Identities=14% Similarity=0.117 Sum_probs=110.7
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeeccc--c-hhhHHHHHHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC--N-ERDIKTAWEA 168 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~--~-~~dI~~a~ea 168 (620)
....|.++..++.+.-.+.|+.-+-+ +| .+++...+.+.+. . ..+..+.+|=.. . ..-+..+-++
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv-~p-------~~v~~a~~~l~~~---~-v~v~tVigFP~G~~~~~~K~~E~~~A 79 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCV-NP-------SYVPLAKELLKGT---E-VRICTVVGFPLGASTTDVKLYETKEA 79 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEe-CH-------HHHHHHHHHcCCC---C-CeEEEEeCCCCCCCcHHHHHHHHHHH
Confidence 45689999999999999999988877 34 2455545444321 0 112233333221 1 1112222333
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
+ ..|++.|.+++....+ ..-..+++.+.+.+.++.+. |.. +-.-.|... .+.+.+...++.+.++|||.|
T Consensus 80 v-~~GAdEiDvv~n~g~l-----~~g~~~~v~~ei~~i~~~~~--g~~-lKvIlE~~~-L~~~ei~~a~~ia~eaGADfv 149 (211)
T TIGR00126 80 I-KYGADEVDMVINIGAL-----KDGNEEVVYDDIRAVVEACA--GVL-LKVIIETGL-LTDEEIRKACEICIDAGADFV 149 (211)
T ss_pred H-HcCCCEEEeecchHhh-----hCCcHHHHHHHHHHHHHHcC--CCe-EEEEEecCC-CCHHHHHHHHHHHHHhCCCEE
Confidence 3 3489999988765421 12345677777777777664 543 333333333 444778899999999999988
Q ss_pred eecC--CccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 249 NIPD--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 249 ~L~D--TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
--.. +.+.++|..+..+-+.+...++ +..+-=.+ | ..-+++-+++||+++-+|
T Consensus 150 KTsTGf~~~gat~~dv~~m~~~v~~~v~----IKaaGGir-t----~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 150 KTSTGFGAGGATVEDVRLMRNTVGDTIG----VKASGGVR-T----AEDAIAMIEAGASRIGAS 204 (211)
T ss_pred EeCCCCCCCCCCHHHHHHHHHHhccCCe----EEEeCCCC-C----HHHHHHHHHHhhHHhCcc
Confidence 7542 2355788887777666554332 33322222 3 355667778888887443
No 145
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.60 E-value=14 Score=39.00 Aligned_cols=182 Identities=19% Similarity=0.189 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---h-hH-HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---K-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~-~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+++.+.|=--+|... + +. ...++.+++.. -+|...=|--+ ..+.+.+|++
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~---------~VPV~lHLDHg~~~e~i~~Ai~ 95 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY---------HHPLALHLDHHEKFDDIAQKVR 95 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999997755455321 1 11 23455555542 13433333333 3455666665
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE--E----cCCCC--------CCCCHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--F----SPEDA--------GRSDRKFL 233 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~--f----~~ed~--------~r~d~e~l 233 (620)
+ |...|.+=.| ..+.+|+++..++.+++|+..|.. |+ . +.||. ..|+|+..
T Consensus 96 ~----GftSVM~DgS----------~l~~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~peea 160 (284)
T PRK09195 96 S----GVRSVMIDGS----------HLPFAQNISLVKEVVDFCHRFDVS-VEAELGRLGGQEDDLQVDEADALYTDPAQA 160 (284)
T ss_pred c----CCCEEEeCCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEecccCcccCcccccccccCCCHHHH
Confidence 4 8888754332 246799999999999999999974 43 1 22332 26889888
Q ss_pred HHHHHHHHHcCCcEEeec--CCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 234 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
.++++ +-|+|.+-++ -.=|.. .|.==.++++.|++.+ ++||.+|+= .|+.-..-..|+..|+.-|+
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~----~vPLVLHGg--SG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK09195 161 REFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV----NIPLVLHGA--SGLPTKDIQQTIKLGICKVN 230 (284)
T ss_pred HHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh----CCCeEEecC--CCCCHHHHHHHHHcCCeEEE
Confidence 77776 5688865443 222322 3444456788888876 377887764 47777888889999988774
No 146
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.58 E-value=2 Score=42.88 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.++-+++++.|.+.|++.||+.+ .+|.-.+.++.+.++.++- .+-+=+-.+.++.+.++++ |.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~--~t~~a~~~I~~l~~~~p~~---------~vGAGTV~~~e~a~~a~~a----GA 81 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITL--RTPNALEAIEALRKEFPDL---------LVGAGTVLTAEQAEAAIAA----GA 81 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEET--TSTTHHHHHHHHHHHHTTS---------EEEEES--SHHHHHHHHHH----T-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--CCccHHHHHHHHHHHCCCC---------eeEEEeccCHHHHHHHHHc----CC
Confidence 4678889999999999999999987 3565568888888764321 2222233467788888876 66
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee--cC
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 252 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L--~D 252 (620)
+-+ +.|..+ .+.+++++++|+. +.=++ .+|.. +..+.++|++.+-+ ++
T Consensus 82 ~Fi--vSP~~~------------------~~v~~~~~~~~i~-~iPG~-----~TptE----i~~A~~~G~~~vK~FPA~ 131 (196)
T PF01081_consen 82 QFI--VSPGFD------------------PEVIEYAREYGIP-YIPGV-----MTPTE----IMQALEAGADIVKLFPAG 131 (196)
T ss_dssp SEE--EESS--------------------HHHHHHHHHHTSE-EEEEE-----SSHHH----HHHHHHTT-SEEEETTTT
T ss_pred CEE--ECCCCC------------------HHHHHHHHHcCCc-ccCCc-----CCHHH----HHHHHHCCCCEEEEecch
Confidence 643 223221 3678999999874 21122 22222 23456899997764 35
Q ss_pred CccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 253 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 253 TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+|. ..+++.++.-+|+ +++- -.-|.-..|.-.-+++|+..+
T Consensus 132 ~~GG------~~~ik~l~~p~p~---~~~~----ptGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 132 ALGG------PSYIKALRGPFPD---LPFM----PTGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp TTTH------HHHHHHHHTTTTT----EEE----EBSS--TTTHHHHHTSTTBSE
T ss_pred hcCc------HHHHHHHhccCCC---CeEE----EcCCCCHHHHHHHHhCCCEEE
Confidence 5551 3577778876774 4443 234555679999999997654
No 147
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=92.53 E-value=0.91 Score=47.09 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=58.3
Q ss_pred EEEcCC---CCCC-CCHHHHHHHHHHHHHcCCcEEeec------CCccccCHHH---HHHHHHHHHHhCCCCCceeEEEe
Q 007056 218 VEFSPE---DAGR-SDRKFLYEILGEVIKVGATTLNIP------DTVGITMPTE---FGKLIADIKANTPGIENVVISTH 284 (620)
Q Consensus 218 V~f~~e---d~~r-~d~e~l~~~~~~~~~aGa~~I~L~------DTvG~~~P~~---v~~li~~l~~~~~~~~~v~i~~H 284 (620)
+..+|. |+++ .+++.+.+.++...+.||+.|-+. +...+...+| +..+|+.+++.+ +++|++|
T Consensus 6 lN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~----~~plsiD 81 (257)
T TIGR01496 6 VNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP----DVPISVD 81 (257)
T ss_pred EeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEe
Confidence 344444 6666 478999999999999999999983 2222222335 445556666544 4789999
Q ss_pred cCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 285 CQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 285 ~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
.++- .-..+|+++|++.|+-.
T Consensus 82 T~~~-----~vi~~al~~G~~iINsi 102 (257)
T TIGR01496 82 TYRA-----EVARAALEAGADIINDV 102 (257)
T ss_pred CCCH-----HHHHHHHHcCCCEEEEC
Confidence 9994 34467888899998754
No 148
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=92.47 E-value=2.1 Score=39.27 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=83.3
Q ss_pred CCCCCCHHHHHHHHHHH-hHcCCCEEEEec--CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 91 PGATLTSKEKLDIARQL-AKLGVDIIEAGF--PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 91 ~g~~fs~~~Kl~Ia~~L-~~~Gvd~IEvGf--P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
....++.++.++.++.+ .+.|+..|-.|. |...++..+.+..+.+.... ...+.-.+.....+ +..++
T Consensus 24 ~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~--------~~~i~~~t~~~~~~-~~~l~ 94 (166)
T PF04055_consen 24 KPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKR--------GIRISINTNGTLLD-EELLD 94 (166)
T ss_dssp GCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCT--------TEEEEEEEESTTHC-HHHHH
T ss_pred ccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhcc--------ccceeeeccccchh-HHHHH
Confidence 35578999999999999 699988888864 55556555555555443111 12344444444333 55566
Q ss_pred HHhcCCCCEEEEEecCCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIH-MEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 239 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h-~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~ 239 (620)
.+...+.+.|.+-+-+.+-. ....++. ....+.+.+.++.+++.|+..+.....-.-..+.+.+.++++.
T Consensus 95 ~l~~~~~~~i~~~l~s~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 95 ELKKLGVDRIRISLESLDEESVLRIINR--GKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHHTTCSEEEEEEBSSSHHHHHHHHSS--TSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHHhcCccEEecccccCCHHHhhhhhcC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 67777888888876655555 6666642 2335667788899999987512211111112344556565553
No 149
>PTZ00413 lipoate synthase; Provisional
Probab=92.47 E-value=6.8 Score=42.93 Aligned_cols=167 Identities=12% Similarity=0.068 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCC---ChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAA---SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~---s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
..++.++-.++|+...++|+++.=+.+... ...+++.+-+..+.+....+ + ..|+++.--- .+-+.+++.|
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p---~--~~IevligDf-~g~~e~l~~L 248 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNP---E--LLLEALVGDF-HGDLKSVEKL 248 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCC---C--CeEEEcCCcc-ccCHHHHHHH
Confidence 467999999999999999999887766422 12334333333333322101 1 2455543210 1113467778
Q ss_pred hcCCCCEEEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKL--RKTKQQVVEIARSMVKFARSL---GCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l--~~t~ee~l~~~~~~v~~a~~~---G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG 244 (620)
+++|.++++--+=|++-+-...- +-+.++ ..+.++++|+. |+. ++=+.+-+---+.+.+.++++.+.+.|
T Consensus 249 ~eAG~dvynHNLETv~rLyp~VRt~~atYe~----sLe~Lr~AKe~f~~gi~-tcSGiIVGLGET~eEvie~m~dLrelG 323 (398)
T PTZ00413 249 ANSPLSVYAHNIECVERITPYVRDRRASYRQ----SLKVLEHVKEFTNGAML-TKSSIMLGLGETEEEVRQTLRDLRTAG 323 (398)
T ss_pred HhcCCCEEecccccCHhHHHHHccCcCCHHH----HHHHHHHHHHHhcCCce-EeeeeEecCCCCHHHHHHHHHHHHHcC
Confidence 88999999988888876654333 124444 44566677765 553 322222222345577889999999999
Q ss_pred CcEEeec----------CCccccCHHHHHHHHHHHH
Q 007056 245 ATTLNIP----------DTVGITMPTEFGKLIADIK 270 (620)
Q Consensus 245 a~~I~L~----------DTvG~~~P~~v~~li~~l~ 270 (620)
+|.+.|- --.-+.+|++|.++=+.-.
T Consensus 324 VDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~ 359 (398)
T PTZ00413 324 VSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAM 359 (398)
T ss_pred CcEEeeccccCCCcccCCceeccCHHHHHHHHHHHH
Confidence 9999873 3345668888877655443
No 150
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=92.45 E-value=16 Score=38.63 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh----hH-HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+.+.+.|=--+|.... .. ...++.+++.. -+|+..=|-.+ ..+.|.+|++
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---------~VPValHLDHg~~~e~i~~ai~ 93 (282)
T TIGR01858 23 IHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTY---------NMPLALHLDHHESLDDIRQKVH 93 (282)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999977555554321 11 23444455432 13544444333 3455666655
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCC--------CCCCCHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--------AGRSDRKFL 233 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed--------~~r~d~e~l 233 (620)
+ |...|.+=.| ..+.+|+++..++++++|+..|+. |+- +.|| ...|+|+.+
T Consensus 94 ~----GFtSVM~DgS----------~lp~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~peea 158 (282)
T TIGR01858 94 A----GVRSAMIDGS----------HFPFAQNVKLVKEVVDFCHRQDCS-VEAELGRLGGVEDDLSVDEEDALYTDPQEA 158 (282)
T ss_pred c----CCCEEeecCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEecCCccCCCccccchhccCCHHHH
Confidence 4 8888754333 246799999999999999999974 431 2223 226788877
Q ss_pred HHHHHHHHHcCCcEEeec--CCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 234 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
.++++ +-|+|.+-++ -.=|.- .|.==.++++.|++.+ ++||.+|+ -.|+..-.-..|+..|+.-|+
T Consensus 159 ~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~----~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 228 (282)
T TIGR01858 159 KEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV----DVPLVLHG--ASDVPDEDVRRTIELGICKVN 228 (282)
T ss_pred HHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh----CCCeEEec--CCCCCHHHHHHHHHcCCeEEE
Confidence 77765 5688865543 122221 3444456888888877 37788776 456667788888999988874
No 151
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=92.41 E-value=15 Score=38.84 Aligned_cols=184 Identities=18% Similarity=0.150 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----h-HHHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----E-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----~-d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 166 (620)
.++.+.-..+++.-.+++.+.|=--+|.... . -...++.+++.... -+|...=|-.+ ..+.+.+|+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------~vPV~lHLDHg~~~e~i~~ai 97 (286)
T PRK08610 25 LNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNI-------TIPVAIHLDHGSSFEKCKEAI 97 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-------CCCEEEECCCCCCHHHHHHHH
Confidence 4678899999999999999977554554221 1 12345555543210 02433333333 345566665
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC------CCCCHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFLY 234 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~------~r~d~e~l~ 234 (620)
++ |...|.+=.| ..+.||+++..++.+++|+..|.. |+- +.||. ..|+|+...
T Consensus 98 ~~----GftSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~yT~peea~ 162 (286)
T PRK08610 98 DA----GFTSVMIDAS----------HSPFEENVATTKKVVEYAHEKGVS-VEAELGTVGGQEDDVVADGIIYADPKECQ 162 (286)
T ss_pred Hc----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeccCCccCCCCCcccccCCHHHHH
Confidence 54 8888754333 256799999999999999999974 432 23332 258998887
Q ss_pred HHHHHHHHcCCcEEeec--CCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 235 EILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
++++ +-|+|.+-++ -.=|.- .|.-=.++++.+++.+ ++||.+|+ -.|..--+-..|+..|+.-|+
T Consensus 163 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~----~vPLVLHG--gSG~~~e~~~~ai~~GI~KiN 231 (286)
T PRK08610 163 ELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST----GLPLVLHG--GTGIPTKDIQKAIPFGTAKIN 231 (286)
T ss_pred HHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH----CCCEEEeC--CCCCCHHHHHHHHHCCCeEEE
Confidence 7775 5688855443 122221 2433356777788776 37788776 477777888889999988763
No 152
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.34 E-value=16 Score=38.56 Aligned_cols=182 Identities=18% Similarity=0.170 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH-H-HHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-F-EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d-~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+++-+.|=-.+|... +.+ + ..++.+++.. -+|...=|--+ ..++|.+|++
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~---------~VPValHLDH~~~~e~i~~ai~ 95 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKA---------SVPVALHLDHGTDFEQVMKCIR 95 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999997755555432 112 2 3455555532 13443333333 3456666666
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC--------CCCCHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFL 233 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~--------~r~d~e~l 233 (620)
+ |...|.+=.| ..+.||+++..++.+++|+..|.. |+- +.||. ..|+|+..
T Consensus 96 ~----GftSVM~DgS----------~lp~eeNi~~T~~vv~~Ah~~gvs-VEaElG~vgg~e~~~~~~~~~~~~T~pe~a 160 (284)
T PRK12857 96 N----GFTSVMIDGS----------KLPLEENIALTKKVVEIAHAVGVS-VEAELGKIGGTEDDITVDEREAAMTDPEEA 160 (284)
T ss_pred c----CCCeEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEeeecCCccCCCCcccchhhcCCHHHH
Confidence 4 8888754333 246799999999999999999974 432 22332 26788887
Q ss_pred HHHHHHHHHcCCcEEeec--CCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 234 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
.++++ +-|+|.+-++ -.=|.. .|.==.++++.|++.++ +||.+|+ -.|+.-.+-..|+..|+.-|+
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~----vPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 161 RRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN----IPIVLHG--SSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred HHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 77765 4588855443 222222 35545568888888763 6788766 457778888889999987763
No 153
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.28 E-value=11 Score=39.02 Aligned_cols=166 Identities=20% Similarity=0.192 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhHcCCCEEEEe-cCCCChhHHHHHHHHHHHhcccccccCCccceEE-eecccchhhHHHHHHHHhcCCC
Q 007056 97 SKEKLDIARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 97 ~~~Kl~Ia~~L~~~Gvd~IEvG-fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~eal~~ag~ 174 (620)
..+-.++++...+.|.+-|-+= -|.......+.++.+.+.+. .|.++ -|. ..+-.++.+.+ +|.
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~---------iPvl~kdfi-~~~~qi~~a~~----~GA 134 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVS---------LPVLRKDFI-IDPYQIYEARA----AGA 134 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcC---------CCEEeeeec-CCHHHHHHHHH----cCC
Confidence 3455789999999999988661 12222233455665555421 13332 111 12334554444 599
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecC-C
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD-T 253 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~D-T 253 (620)
+.|++....-+ .+.+.+.+++++++|++ +.... ++.+.+ +.+.++|++.|.+-- +
T Consensus 135 D~VlLi~~~l~--------------~~~l~~li~~a~~lGl~-~lvev-----h~~~E~----~~A~~~gadiIgin~rd 190 (260)
T PRK00278 135 DAILLIVAALD--------------DEQLKELLDYAHSLGLD-VLVEV-----HDEEEL----ERALKLGAPLIGINNRN 190 (260)
T ss_pred CEEEEEeccCC--------------HHHHHHHHHHHHHcCCe-EEEEe-----CCHHHH----HHHHHcCCCEEEECCCC
Confidence 99988765411 14677889999999986 43333 233333 446688999988743 1
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 254 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 254 vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.....|. .+.+..+...+|+...+.-+-..++ ..+...+.++||+.|
T Consensus 191 l~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~t-----~ed~~~~~~~Gad~v 237 (260)
T PRK00278 191 LKTFEVD--LETTERLAPLIPSDRLVVSESGIFT-----PEDLKRLAKAGADAV 237 (260)
T ss_pred cccccCC--HHHHHHHHHhCCCCCEEEEEeCCCC-----HHHHHHHHHcCCCEE
Confidence 1122222 2233444444553101122223333 567788888999876
No 154
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.08 E-value=18 Score=38.13 Aligned_cols=197 Identities=11% Similarity=0.075 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHHHH-HHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFEA-VRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~e~-v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+..+.-.++++.|.+.||+-|=+ | |+.-+.+|+.. ++...+... +-.|.+++.+....+-++.+ +
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-------g~~pvi~gv~~~t~~ai~~a-~ 93 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-------GKVPVYTGVGGNTSDAIEIA-R 93 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCccHHHHHHHH-H
Confidence 478888999999999999999876 4 36666677644 344444432 23467777764333333433 3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
....+|++.+-+.-|-. ++.+.+++++-..+.++. .++.-+.|+. .+...+++.+.+++ +.-...
T Consensus 94 ~a~~~Gadav~~~pP~y-------~~~s~~~i~~~f~~v~~a---~~~pvilYn~-~g~~l~~~~~~~La----~~~~nv 158 (296)
T TIGR03249 94 LAEKAGADGYLLLPPYL-------INGEQEGLYAHVEAVCES---TDLGVIVYQR-DNAVLNADTLERLA----DRCPNL 158 (296)
T ss_pred HHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHhc---cCCCEEEEeC-CCCCCCHHHHHHHH----hhCCCE
Confidence 34567999886654431 344666666655555442 2344456662 23345566555443 333478
Q ss_pred EeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHH
Q 007056 248 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV 327 (620)
Q Consensus 248 I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv 327 (620)
+.+.||.| .+..+.++++. .++ +.. -+-+|+- +-...+.++.+|++ +.+.| .+|.-.+.++
T Consensus 159 vgiKds~~--d~~~~~~~~~~----~~~--~~~-v~~G~~~---~d~~~~~~~~~Ga~---G~is~----~~n~~P~~~~ 219 (296)
T TIGR03249 159 VGFKDGIG--DMEQMIEITQR----LGD--RLG-YLGGMPT---AEVTAPAYLPLGVT---SYSSA----IFNFIPHIAR 219 (296)
T ss_pred EEEEeCCC--CHHHHHHHHHH----cCC--CeE-EEeCCCc---chhhHHHHHhCCCC---EEEec----HHHhhHHHHH
Confidence 99999976 55566665433 332 111 2223310 11233455677884 44544 5677777777
Q ss_pred HHHHh
Q 007056 328 MAFKC 332 (620)
Q Consensus 328 ~~L~~ 332 (620)
...+.
T Consensus 220 ~~~~~ 224 (296)
T TIGR03249 220 AFYEA 224 (296)
T ss_pred HHHHH
Confidence 66654
No 155
>PLN02428 lipoic acid synthase
Probab=91.97 E-value=5.5 Score=43.25 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=96.1
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCC---ChhHH----HHHHHHHHHhcccccccCCccceEEeecccchhhHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAA---SKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 165 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~---s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 165 (620)
.....++-.++++.+.+.|++++=+-+... ....+ +.++.|.+..+. ..+..+...-..+ +..
T Consensus 128 ~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~---------i~Ie~L~pdf~~d-~el 197 (349)
T PLN02428 128 PPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPE---------ILVEALVPDFRGD-LGA 197 (349)
T ss_pred CCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCC---------cEEEEeCccccCC-HHH
Confidence 355678888999999999999876644321 11223 344444443211 2445553321112 446
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCHHHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEV 240 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~--G~~~V~f~~ed~~r~d~e~l~~~~~~~ 240 (620)
++.++.+|.++++.-+-+++- +..+++ .+.++ ..+.++.+++. |+. +.-+.+-+.--+.+.+.++++.+
T Consensus 198 L~~L~eAG~d~i~hnlETv~r-L~~~Ir~~~~sye~----~Le~L~~ak~~~pGi~-tkSg~MvGLGET~Edv~e~l~~L 271 (349)
T PLN02428 198 VETVATSGLDVFAHNIETVER-LQRIVRDPRAGYKQ----SLDVLKHAKESKPGLL-TKTSIMLGLGETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHcCCCEEccCccCcHH-HHHHhcCCCCCHHH----HHHHHHHHHHhCCCCe-EEEeEEEecCCCHHHHHHHHHHH
Confidence 677888899998877666664 444554 24444 45567777877 764 32222222234568888999999
Q ss_pred HHcCCcEEeecC-------C---ccccCHHHHHHHHHHHH
Q 007056 241 IKVGATTLNIPD-------T---VGITMPTEFGKLIADIK 270 (620)
Q Consensus 241 ~~aGa~~I~L~D-------T---vG~~~P~~v~~li~~l~ 270 (620)
.+.|++.+.|.= + .-+-+|++|.++=+.-.
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~ 311 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGE 311 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHH
Confidence 999999886632 1 22346777666544433
No 156
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=91.95 E-value=1.3 Score=44.48 Aligned_cols=155 Identities=25% Similarity=0.302 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-+.++-+.+++.|.+-|++.||+.+ .+|.-.+.++.++++.++.+ |-+=+-.+.++.+.+.++ |.
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl--~sp~a~e~I~~l~~~~p~~l---------IGAGTVL~~~q~~~a~~a----Ga 86 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL--RTPAALEAIRALAKEFPEAL---------IGAGTVLNPEQARQAIAA----GA 86 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec--CCCCHHHHHHHHHHhCcccE---------EccccccCHHHHHHHHHc----CC
Confidence 5789999999999999999999976 56777889999998765321 111122366777776655 66
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee--cC
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 252 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L--~D 252 (620)
+-+ +.|. .+ .+.+++|..+|+. +.|--++.++ +..+.++|++.+-+ +.
T Consensus 87 ~fi--VsP~----------~~--------~ev~~~a~~~~ip---~~PG~~TptE-------i~~Ale~G~~~lK~FPa~ 136 (211)
T COG0800 87 QFI--VSPG----------LN--------PEVAKAANRYGIP---YIPGVATPTE-------IMAALELGASALKFFPAE 136 (211)
T ss_pred CEE--ECCC----------CC--------HHHHHHHHhCCCc---ccCCCCCHHH-------HHHHHHcChhheeecCcc
Confidence 543 2232 11 2578889999864 4443232222 23456789887764 23
Q ss_pred CccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 253 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 253 TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
++|. | .+++.+.--+|+ +. +=-+-|-...|.-.-+.+|+..+
T Consensus 137 ~~Gg--~----~~~ka~~gP~~~---v~----~~pTGGVs~~N~~~yla~gv~av 178 (211)
T COG0800 137 VVGG--P----AMLKALAGPFPQ---VR----FCPTGGVSLDNAADYLAAGVVAV 178 (211)
T ss_pred ccCc--H----HHHHHHcCCCCC---Ce----EeecCCCCHHHHHHHHhCCceEE
Confidence 3431 1 234444333332 33 33466777789999999995544
No 157
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.91 E-value=13 Score=39.17 Aligned_cols=196 Identities=10% Similarity=0.093 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-----cCCCChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhh-HHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvG-----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 166 (620)
.+..+.-.++++.|.+.||+-|=++ |+.-+.+|+ +.++...+... +.+|.+++.+..+.++ |+.+-
T Consensus 17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-------g~~pvi~gv~~~~t~~ai~~a~ 89 (294)
T TIGR02313 17 DIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-------GRIPFAPGTGALNHDETLELTK 89 (294)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-------CCCcEEEECCcchHHHHHHHHH
Confidence 3788888999999999999987663 344455554 44455555432 3357788877655544 44443
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC--CCCCCHHHHHHHHHHHHHcC
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed--~~r~d~e~l~~~~~~~~~aG 244 (620)
. ....|++.+-+.-|.. +..+.++.++-..+.++... ++.-+.|+... +...+++.+.++++. .
T Consensus 90 ~-A~~~Gad~v~v~pP~y-------~~~~~~~l~~~f~~ia~a~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~---~- 155 (294)
T TIGR02313 90 F-AEEAGADAAMVIVPYY-------NKPNQEALYDHFAEVADAVP--DFPIIIYNIPGRAAQEIAPKTMARLRKD---C- 155 (294)
T ss_pred H-HHHcCCCEEEEcCccC-------CCCCHHHHHHHHHHHHHhcc--CCCEEEEeCchhcCcCCCHHHHHHHHhh---C-
Confidence 3 3567999887766542 34466676666665555432 34445665543 344566766655532 2
Q ss_pred CcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHH
Q 007056 245 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 324 (620)
Q Consensus 245 a~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lE 324 (620)
...+.+.||.|-+ ..+.+++ ...++ +..+ +.+++ ...+.++.+|++.. +.| .+|.--+
T Consensus 156 pnv~giK~ss~d~--~~~~~~~----~~~~~--~~~v-~~G~d------~~~~~~l~~Ga~G~---is~----~~n~~P~ 213 (294)
T TIGR02313 156 PNIVGAKESNKDF--EHLNHLF----LEAGR--DFLL-FCGIE------LLCLPMLAIGAAGS---IAA----TANVEPK 213 (294)
T ss_pred CCEEEEEeCCCCH--HHHHHHH----HhcCC--CeEE-EEcch------HHHHHHHHCCCCEE---Eec----HHhhCHH
Confidence 4789999998732 3444433 23332 2222 23332 45567788898654 444 3577776
Q ss_pred HHHHHHHh
Q 007056 325 EVVMAFKC 332 (620)
Q Consensus 325 evv~~L~~ 332 (620)
.++...+.
T Consensus 214 ~~~~l~~~ 221 (294)
T TIGR02313 214 EVAELCEA 221 (294)
T ss_pred HHHHHHHH
Confidence 66554443
No 158
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=91.89 E-value=19 Score=38.05 Aligned_cols=182 Identities=18% Similarity=0.182 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+.+-+.|=-..|.... -+ ...++.+++.. -+|...=|--+ ..+.|.+|++
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---------~VPValHLDHg~~~e~i~~ai~ 95 (286)
T PRK12738 25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY---------NMPLALHLDHHESLDDIRRKVH 95 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999987654553321 11 23444445432 13443333332 3445555554
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC--------CCCCHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFL 233 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~--------~r~d~e~l 233 (620)
+ |...|.+=.| ..+.+|+++..++.+++|+..|+. |+- +.||. ..|+|+.+
T Consensus 96 ~----GFtSVM~DgS----------~lp~eeNi~~T~evv~~Ah~~gv~-VEaElG~igg~ed~~~~~~~~~~~T~peea 160 (286)
T PRK12738 96 A----GVRSAMIDGS----------HFPFAENVKLVKSVVDFCHSQDCS-VEAELGRLGGVEDDMSVDAESAFLTDPQEA 160 (286)
T ss_pred c----CCCeEeecCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeeCCccCCcccccchhcCCCHHHH
Confidence 4 8888754333 246799999999999999999974 431 23332 26788888
Q ss_pred HHHHHHHHHcCCcEEeec--CCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 234 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
.++++ +-|+|.+-++ -.=|.. .|.==.++++.|++.+ ++||.+|+= .|..--+-..|++.|..-|+
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~----~vPLVLHGg--SG~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 161 KRFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV----DVPLVLHGA--SDVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred HHHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh----CCCEEEeCC--CCCCHHHHHHHHHcCCeEEE
Confidence 77765 4588855443 122221 3555567888888877 378887764 55557788889999988774
No 159
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=91.83 E-value=7.3 Score=37.27 Aligned_cols=149 Identities=18% Similarity=0.098 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHhHcC-----CCEEEEe--cCCCChhH--HHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 93 ATLTSKEKLDIARQLAKLG-----VDIIEAG--FPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~G-----vd~IEvG--fP~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
...+.++..+.++.+.+.| ++.+-.+ -|...+.+ .+.++.+.+..... ....+...++...-+ +
T Consensus 28 ~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~tn~~~~~-~ 100 (216)
T smart00729 28 RSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLA------DDVEITIETRPGTLT-E 100 (216)
T ss_pred hHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCC------CCeEEEEEeCcccCC-H
Confidence 4467788888888886555 3444443 34444433 35566665542110 011222222211111 2
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CCEEEEcCCCC-CCCCHHHHHHHHHHHH
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG-CDDVEFSPEDA-GRSDRKFLYEILGEVI 241 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G-~~~V~f~~ed~-~r~d~e~l~~~~~~~~ 241 (620)
..++.++.++.+.+.+-+-+.+-+....+++. ...+.+.+.++.+++.| .. |.+...-. ...+.+.+.++++.+.
T Consensus 101 ~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~g~~~-v~~~~~~g~~~~~~~~~~~~~~~~~ 177 (216)
T smart00729 101 ELLEALKEAGVNRVSLGVQSGSDEVLKAINRG--HTVEDVLEAVEKLREAGPIK-VSTDLIVGLPGETEEDFEETLKLLK 177 (216)
T ss_pred HHHHHHHHcCCCeEEEecccCCHHHHHHhcCC--CCHHHHHHHHHHHHHhCCcc-eEEeEEecCCCCCHHHHHHHHHHHH
Confidence 33455666788888887766554544445443 23477888999999999 54 54433322 2367899999999999
Q ss_pred HcCCcEEeec
Q 007056 242 KVGATTLNIP 251 (620)
Q Consensus 242 ~aGa~~I~L~ 251 (620)
+.|++.|.+-
T Consensus 178 ~~~~~~i~~~ 187 (216)
T smart00729 178 ELGPDRVSIF 187 (216)
T ss_pred HcCCCeEEee
Confidence 9999876653
No 160
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=91.73 E-value=5.5 Score=44.62 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHHhHc--CCCEEEE---ecCCCChh-HHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHH
Q 007056 93 ATLTSKEKLDIARQLAKL--GVDIIEA---GFPAASKE-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 166 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~--Gvd~IEv---GfP~~s~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 166 (620)
..+|+++.++.++.+.+. +++.|=+ |=|-..++ .++.++.+.+..+ ++...|..-+-...+. +
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~-------~i~i~lsTNG~~l~e~----i 126 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLP-------DVKLCLSTNGLMLPEH----V 126 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcC-------CCeEEEECCCCCCHHH----H
Confidence 458999999999988753 4444333 22555553 4677777776521 1111222111112233 3
Q ss_pred HHHhcCCCCEEEEEecCCH--HHHHH---------Hh-CCCHHHH-HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSG--IHMEH---------KL-RKTKQQV-VEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 233 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd--~h~~~---------~l-~~t~ee~-l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l 233 (620)
+.|...|++.|.+-+...+ .|.+. ++ +.+...+ ++.+.+.++++.+.|.. |.+...-....+.+.+
T Consensus 127 ~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~-v~v~~vlIpGiND~~i 205 (442)
T TIGR01290 127 DRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGIL-VKVNSVLIPGINDEHL 205 (442)
T ss_pred HHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCe-EEEEEEeeCCcCHHHH
Confidence 4455668898888776654 44321 11 2222332 57778889999999875 4332111112344789
Q ss_pred HHHHHHHHHcCCcEEee------c--CCc------cccCHHHHHHHHHHHHHhCCCCCceeEEEecCC
Q 007056 234 YEILGEVIKVGATTLNI------P--DTV------GITMPTEFGKLIADIKANTPGIENVVISTHCQN 287 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L------~--DTv------G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN 287 (620)
.++++.+.+.|++.++| + .+. -..+++++.++-+.+...++ .--||.-
T Consensus 206 ~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~------~~~~c~~ 267 (442)
T TIGR01290 206 VEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP------QMRHCHQ 267 (442)
T ss_pred HHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh------hhHHHHh
Confidence 99999999999987776 2 222 22356677777666666554 3457764
No 161
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.60 E-value=12 Score=40.64 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=107.1
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH--------HHHHHHHHHhcccccccCCccceEEeecccchhh
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF--------EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD 161 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~--------e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d 161 (620)
..-=+.++-+++|+.|.+.|++.+=.|+ |..||..| +.+++.+++. |+. .++- -...++
T Consensus 109 CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~--------Gl~-~~te--v~d~~~ 177 (352)
T PRK13396 109 CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT--------GLG-IITE--VMDAAD 177 (352)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc--------CCc-EEEe--eCCHHH
Confidence 3345789999999999999999998775 76676432 3333333332 331 2211 124455
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Q 007056 162 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVI 241 (620)
Q Consensus 162 I~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~ 241 (620)
++...+. ++.+.| ++-+.. + .+.++++.+.|.. |.++- +.-.+++.+...++.+.
T Consensus 178 v~~~~~~-----~d~lqI--ga~~~~-----------n----~~LL~~va~t~kP-Vllk~--G~~~t~ee~~~A~e~i~ 232 (352)
T PRK13396 178 LEKIAEV-----ADVIQV--GARNMQ-----------N----FSLLKKVGAQDKP-VLLKR--GMAATIDEWLMAAEYIL 232 (352)
T ss_pred HHHHHhh-----CCeEEE--Cccccc-----------C----HHHHHHHHccCCe-EEEeC--CCCCCHHHHHHHHHHHH
Confidence 5554432 455554 332211 1 2345666667764 76643 22347788888888888
Q ss_pred HcCCcEEeecCC-----c-cccCHHHH-HHHHHHHHHhCCCCCceeEEE---ecCCCcchHHHHHHHHHHhcCc--EEee
Q 007056 242 KVGATTLNIPDT-----V-GITMPTEF-GKLIADIKANTPGIENVVIST---HCQNDLGLSTANTIAGACAGAR--QVEV 309 (620)
Q Consensus 242 ~aGa~~I~L~DT-----v-G~~~P~~v-~~li~~l~~~~~~~~~v~i~~---H~HND~GlAvANslaAv~aGA~--~Vd~ 309 (620)
+.|-..|.||.. . ++. ++.+ -..|..+++.+. +||-+ |.=-...+-.+-+++|+.+||+ .|+.
T Consensus 233 ~~Gn~~viL~erG~rtf~s~y~-~~~~dl~ai~~lk~~~~----lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 233 AAGNPNVILCERGIRTFDRQYT-RNTLDLSVIPVLRSLTH----LPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred HcCCCeEEEEecCCccCcCCCC-CCCcCHHHHHHHHHhhC----CCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEe
Confidence 999988999976 3 433 1111 134556666542 34522 3223344456889999999999 7776
Q ss_pred cccc
Q 007056 310 TING 313 (620)
Q Consensus 310 Ti~G 313 (620)
=...
T Consensus 308 H~~p 311 (352)
T PRK13396 308 HPNP 311 (352)
T ss_pred cCCc
Confidence 5543
No 162
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.44 E-value=4.6 Score=42.00 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=74.5
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCEEEEcCCCC
Q 007056 149 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDA 225 (620)
Q Consensus 149 ~~i~~~~r~-~~~dI~~a~eal~~ag~~~v~i~~~-~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~-~G~~~V~f~~ed~ 225 (620)
|.+.--+.. ..++++.|++.+...|.+.|.+.-- +|... ...+ +.++ ...+...|+ .++. |.|++ |=
T Consensus 134 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~-----~~~~-~~~d--l~~i~~lk~~~~~p-V~~ds-~H 203 (260)
T TIGR01361 134 PVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFE-----KATR-NTLD--LSAVPVLKKETHLP-IIVDP-SH 203 (260)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCC-----CCCc-CCcC--HHHHHHHHHhhCCC-EEEcC-CC
Confidence 455555544 7899999999998888877766532 43210 1111 1111 123333443 4775 88855 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEe----------ecCCccccCHHHHHHHHHHHHH
Q 007056 226 GRSDRKFLYEILGEVIKVGATTLN----------IPDTVGITMPTEFGKLIADIKA 271 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I~----------L~DTvG~~~P~~v~~li~~l~~ 271 (620)
+--..+++..++.+++.+||+.|. ++|-.-.++|+++.++++.+++
T Consensus 204 s~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 204 AAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred CCCccchHHHHHHHHHHcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHHhh
Confidence 334457888999999999998432 4799999999999999999875
No 163
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.34 E-value=4 Score=41.98 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc-----------ccCHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEF 262 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG-----------~~~P~~v 262 (620)
.+.+|.+..+...++.. ... +..+.+.+ ..+++.+.+.++.+.++|+..|.|-|.++ ...+++.
T Consensus 52 ~~~~e~~~~~~~I~~~~---~~P-v~~D~~~G-~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~ 126 (243)
T cd00377 52 LTLDEVLAAVRRIARAV---DLP-VIADADTG-YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEF 126 (243)
T ss_pred CCHHHHHHHHHHHHhhc---cCC-EEEEcCCC-CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHH
Confidence 35677777666555443 333 66677554 44778899999999999999999977763 5688999
Q ss_pred HHHHHHHHHhCCCCCceeEEEe------cCCCcchHHHHHHHHHHhcCcEE
Q 007056 263 GKLIADIKANTPGIENVVISTH------CQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 263 ~~li~~l~~~~~~~~~v~i~~H------~HND~GlAvANslaAv~aGA~~V 307 (620)
.+.|+.+++...+..++.|-.= ..+.+--++.=+.++.++|||.|
T Consensus 127 ~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v 177 (243)
T cd00377 127 VAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGI 177 (243)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEE
Confidence 9999998876543112333322 12566678888899999999887
No 164
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=91.32 E-value=14 Score=37.33 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=102.7
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceE---Eeec--ccc-h---hhH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI---CGLS--RCN-E---RDI 162 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i---~~~~--r~~-~---~dI 162 (620)
+...+.++-.++++...+.|++.+-+- |.. ++...+...... .+...+ +.+. +.. . ..+
T Consensus 15 ~p~~~~~d~~~~~~~~~~~g~~av~v~-~~~-------~~~~~~~~~~~~----~~i~~~~~~~~i~~p~~~~~~~~~~v 82 (235)
T cd00958 15 GPNPGLEDPEETVKLAAEGGADAVALT-KGI-------ARAYGREYAGDI----PLIVKLNGSTSLSPKDDNDKVLVASV 82 (235)
T ss_pred CCCccccCHHHHHHHHHhcCCCEEEeC-hHH-------HHhcccccCCCC----cEEEEECCCCCCCCCCCCchhhhcCH
Confidence 445677888899999999999999883 221 111111110000 111011 0111 111 1 123
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC-CCCC----CCCHHHHHHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG----RSDRKFLYEIL 237 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~-ed~~----r~d~e~l~~~~ 237 (620)
+.++ ..|++.|.+.+...+ .+.++.++.+.+.++.+++.|+. +.+.. -++- ..+.+.+.+.+
T Consensus 83 ~~a~----~~Ga~~v~~~~~~~~--------~~~~~~~~~i~~v~~~~~~~g~~-~iie~~~~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 83 EDAV----RLGADAVGVTVYVGS--------EEEREMLEELARVAAEAHKYGLP-LIAWMYPRGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred HHHH----HCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCC-EEEEEeccCCcccCccCHHHHHHHH
Confidence 3333 458887755443221 12467888999999999999986 43311 0110 12346666668
Q ss_pred HHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEe-cCCCcchHHHHHHHHHHhcCcEEe
Q 007056 238 GEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH-CQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 238 ~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H-~HND~GlAvANslaAv~aGA~~Vd 308 (620)
+.+.++|||.|.+.=|. .++.+.++ .+..+ .+ +.+.-. ..+|..-.+.|.-.++++||+.|-
T Consensus 150 ~~a~~~GaD~Ik~~~~~---~~~~~~~i----~~~~~-~p-vv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~ 212 (235)
T cd00958 150 RIGAELGADIVKTKYTG---DAESFKEV----VEGCP-VP-VVIAGGPKKDSEEEFLKMVYDAMEAGAAGVA 212 (235)
T ss_pred HHHHHHCCCEEEecCCC---CHHHHHHH----HhcCC-CC-EEEeCCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 88889999999985332 24444444 44443 11 322211 234556678999999999999873
No 165
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.22 E-value=3.1 Score=43.90 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc-----------ccCHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEF 262 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG-----------~~~P~~v 262 (620)
.+.+|.++.+.+.++. ..+. |..+.++++-. +..+.+.++.+.++|+.-|+|-|.++ ...++++
T Consensus 56 lt~~e~~~~~~~I~~~---~~iP-viaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~ 130 (285)
T TIGR02317 56 TTLDEVAEDARRITRV---TDLP-LLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEM 130 (285)
T ss_pred CCHHHHHHHHHHHHhc---cCCC-EEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHH
Confidence 3667777766555433 3454 88899666544 89999999999999999999999973 3466777
Q ss_pred HHHHHHHHHhCCCCCceeEEEe----cCCCcchHHHHHHHHHHhcCcEE
Q 007056 263 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 263 ~~li~~l~~~~~~~~~v~i~~H----~HND~GlAvANslaAv~aGA~~V 307 (620)
.+.|+..++.-.+. +.-|-.- ....+--|+.=+.+..+||||.|
T Consensus 131 ~~kI~Aa~~a~~~~-d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~v 178 (285)
T TIGR02317 131 VDKIAAAVDAKRDE-DFVIIARTDARAVEGLDAAIERAKAYVEAGADMI 178 (285)
T ss_pred HHHHHHHHHhccCC-CEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEE
Confidence 77888777654332 2222211 12345567777788888888876
No 166
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.18 E-value=14 Score=35.00 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhHcCCCEEEEecCCCChhHH-----HHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHHHHhc
Q 007056 98 KEKLDIARQLAKLGVDIIEAGFPAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWEAVKY 171 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~eal~~ 171 (620)
+.-.++++.+.+.|++.|+++++..++.+. +.++.+....+ .+.++.+.-. ..+.+......++.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETD---------LPLGVQLAINDAAAAVDIAAAAARA 82 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcC---------CcEEEEEccCCchhhhhHHHHHHHH
Confidence 566889999999999999999865444322 22444444321 1223322211 22222221233456
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 007056 172 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 249 (620)
Q Consensus 172 ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~ 249 (620)
+|.+.|++-...... .+...+.++.+++. ++. +......- .+.+.. .+.+.|++.|.
T Consensus 83 ~g~d~v~l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~-v~~~~~~~--~~~~~~-----~~~~~g~d~i~ 141 (200)
T cd04722 83 AGADGVEIHGAVGYL-------------AREDLELIRELREAVPDVK-VVVKLSPT--GELAAA-----AAEEAGVDEVG 141 (200)
T ss_pred cCCCEEEEeccCCcH-------------HHHHHHHHHHHHHhcCCce-EEEEECCC--Cccchh-----hHHHcCCCEEE
Confidence 789998876553221 12233445555554 443 33322111 111100 15678999998
Q ss_pred ecCCccccC----HHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHH-HHHHHHHHhcCcEEee
Q 007056 250 IPDTVGITM----PTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAGARQVEV 309 (620)
Q Consensus 250 L~DTvG~~~----P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANslaAv~aGA~~Vd~ 309 (620)
+....+... +......+..++... + ++|.. +-|... .|...+++.||+.|..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~pi~~----~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGS-K---VPVIA----GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcC-C---CCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence 865444221 111122333344332 2 34443 356666 7888888999998864
No 167
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=91.13 E-value=6.9 Score=41.16 Aligned_cols=207 Identities=18% Similarity=0.159 Sum_probs=124.4
Q ss_pred HHHHhHcCCCEEEEec---------CCCC----hhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 104 ARQLAKLGVDIIEAGF---------PAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGf---------P~~s----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
++.+.++|++.|=.+. |-.. .+-.+.+++|++...-.+ ++..=.||+. ...+.+.+..+.
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv-----~vD~dtGfG~--~~nvartV~~~~ 103 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPV-----LVDIDTGFGE--ALNVARTVRELE 103 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCce-----EEeccCCCCc--HHHHHHHHHHHH
Confidence 6677889999887642 2111 112466777776431110 1111123443 445556666666
Q ss_pred cCCCCEEEEEecCCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC-CCCCC-CCHHHHHHHHHHHHHcCC
Q 007056 171 YAKRPRIHTFIATSGIHMEH---KLRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAGR-SDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~---~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~-ed~~r-~d~e~l~~~~~~~~~aGa 245 (620)
.+|+..+||-..+.+-.+-+ +-=.+.+|..++++.+++..++..+ | +.+ .|+.- --.+..++-+++..++||
T Consensus 104 ~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~f--v-i~ARTda~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 104 QAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDF--V-IIARTDALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred HcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCe--E-EEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence 78999999887766533322 2224688888888887777766322 2 222 11111 115777788888899999
Q ss_pred cEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccccc-CCcCcccHH
Q 007056 246 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG-ERAGNASLE 324 (620)
Q Consensus 246 ~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlG-ERaGNa~lE 324 (620)
|.|. +-|...++++.++.+.++ +| +++-+--+--..+-..-.|+ ++|+++| ++|.. =|+.|..++
T Consensus 181 D~if---~~al~~~e~i~~f~~av~--~p----l~~N~t~~g~tp~~~~~~L~--~~Gv~~V---~~~~~~~raa~~a~~ 246 (289)
T COG2513 181 DAIF---PEALTDLEEIRAFAEAVP--VP----LPANITEFGKTPLLTVAELA--ELGVKRV---SYGLTAFRAALKAAE 246 (289)
T ss_pred cEEc---cccCCCHHHHHHHHHhcC--CC----eeeEeeccCCCCCcCHHHHH--hcCceEE---EECcHHHHHHHHHHH
Confidence 9999 557777888888888776 43 23332222222333333333 5688888 34433 489999999
Q ss_pred HHHHHHHhcc
Q 007056 325 EVVMAFKCRG 334 (620)
Q Consensus 325 evv~~L~~~~ 334 (620)
.++..+...|
T Consensus 247 ~~~~~i~~~g 256 (289)
T COG2513 247 QAAREIRREG 256 (289)
T ss_pred HHHHHHHhcC
Confidence 9998888754
No 168
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.09 E-value=14 Score=38.50 Aligned_cols=206 Identities=11% Similarity=0.063 Sum_probs=95.7
Q ss_pred HHHHHHHhHcCCCEEEEec---CC------CChhHHHHHHHHHHHhcccccccCCccceEEeecccchhh-------HHH
Q 007056 101 LDIARQLAKLGVDIIEAGF---PA------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-------IKT 164 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGf---P~------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-------I~~ 164 (620)
...++.+.++|.+.+|+ | |. .++.+.+.++...+.....+..-....|-..-++..+++- +..
T Consensus 14 ~~a~~~~~~~G~~~~qi-f~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~ 92 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMF-FLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDE 92 (274)
T ss_pred HHHHHHHHHhCCCEEEE-EecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHH
Confidence 34678889999999999 4 32 2244566776655432111000000011111222212111 222
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC------CCCCHHHHHHHHH
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA------GRSDRKFLYEILG 238 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~------~r~d~e~l~~~~~ 238 (620)
+++.....|.+.|.+-. -+. .....++.++.+.++++.+-+.... |.+..|.. .-.+++.+.++++
T Consensus 93 ~i~~A~~lga~~vv~H~-G~~------~~~~~e~~~~~~~~~l~~l~~~~~~-v~l~lEN~~~~~~~l~~~~~el~~ll~ 164 (274)
T TIGR00587 93 ELKRCELLGIMLYNFHP-GSA------LKCSEEEGLDNLIESLNVVIKETKI-VTILLENMAGQGSELGRSFEELAYIIK 164 (274)
T ss_pred HHHHHHHcCCCEEEECC-CCC------CCCCHHHHHHHHHHHHHHHHhccCC-CEEEEEeCCCCCCccCCCHHHHHHHHH
Confidence 23333334565443322 111 0224566666666666655432111 33333311 1236666666665
Q ss_pred HHHHcCCcEEeecCCcccc--------CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcc-hHHHHHHHHHHhcCcEEee
Q 007056 239 EVIKVGATTLNIPDTVGIT--------MPTEFGKLIADIKANTPGIENVVISTHCQNDLG-LSTANTIAGACAGARQVEV 309 (620)
Q Consensus 239 ~~~~aGa~~I~L~DTvG~~--------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G-lAvANslaAv~aGA~~Vd~ 309 (620)
.+.. .+.+.+|--+|-+ +++.+.+++..+.+.++. +-...+|+|+... ++ .| +.-|.
T Consensus 165 ~~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~--~~i~~vHl~Ds~~~~g---------~~-~d~H~ 230 (274)
T TIGR00587 165 VIVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGF--KYLKAIHLNDSKNVLG---------SR-KDRHE 230 (274)
T ss_pred hcCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCH--hheeEEEEEcCccccc---------cC-cCCCC
Confidence 4421 1345555333322 255566666666554421 1234677777531 10 00 11121
Q ss_pred ccccccCCcCcccHHHHHHHHHhcc
Q 007056 310 TINGIGERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 310 Ti~GlGERaGNa~lEevv~~L~~~~ 334 (620)
-+|+ |+.+.+.++..|+...
T Consensus 231 ---~iG~--G~i~~~~~~~~L~~~~ 250 (274)
T TIGR00587 231 ---NIGE--GIIGFDAFRLIMDDER 250 (274)
T ss_pred ---CcCC--ccCCHHHHHHHHcCcc
Confidence 2333 8999999999887653
No 169
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.05 E-value=8.9 Score=40.09 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=74.7
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcC
Q 007056 149 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA----TSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSP 222 (620)
Q Consensus 149 ~~i~~~~r~-~~~dI~~a~eal~~ag~~~v~i~~~----~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ 222 (620)
|++.--+.. ..+++..+.+.+...|.+.+++.-- .+. -. .+.++. ..+...|+. ++. |.|++
T Consensus 136 PV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~--------Y~-~~~vdl--~~i~~lk~~~~~p-V~~D~ 203 (266)
T PRK13398 136 PILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFET--------YT-RNTLDL--AAVAVIKELSHLP-IIVDP 203 (266)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCC--------CC-HHHHHH--HHHHHHHhccCCC-EEEeC
Confidence 444433333 6788888888888888887777542 111 11 122332 345555554 665 77865
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcE--E--------eecCCccccCHHHHHHHHHHHHHh
Q 007056 223 EDAGRSDRKFLYEILGEVIKVGATT--L--------NIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 223 ed~~r~d~e~l~~~~~~~~~aGa~~--I--------~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
+-+-...+++..++.+++.+||+- | .++|--=.++|+++.++++.+++.
T Consensus 204 -sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 204 -SHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred -CCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHHHHH
Confidence 333345578999999999999982 2 257999999999999999999864
No 170
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.04 E-value=24 Score=40.19 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCCEE
Q 007056 98 KEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRI 177 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v 177 (620)
++.++-++.+.+.|.|+|.+|.....|+ .+.+..+.+.+... . + .| + +.--.+.+-++.++++ |++.|
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~-~~~v~~~V~~l~~~-~---~-~p-I-SIDT~~~~v~eaAL~a----GAdiI 232 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDD-PDVVKEKVKTALDA-L---D-SP-V-IADTPTLDELYEALKA----GASGV 232 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCc-HHHHHHHHHHHHhh-C---C-Cc-E-EEeCCCHHHHHHHHHc----CCCEE
Confidence 7788889999999999999998655443 22233333222111 0 0 11 2 2333456667777665 77765
Q ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcccc
Q 007056 178 HTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGIT 257 (620)
Q Consensus 178 ~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~ 257 (620)
. +.|. ..++ ++...+++.|+. +..-+.+ ...+.+++.+.++.+.++|.+.| +.|-.=..
T Consensus 233 N---sVs~------------~~~d---~~~~l~a~~g~~-vVlm~~~-~~~~~~~l~~~ie~a~~~Gi~~I-IlDPglg~ 291 (499)
T TIGR00284 233 I---MPDV------------ENAV---ELASEKKLPEDA-FVVVPGN-QPTNYEELAKAVKKLRTSGYSKV-AADPSLSP 291 (499)
T ss_pred E---ECCc------------cchh---HHHHHHHHcCCe-EEEEcCC-CCchHHHHHHHHHHHHHCCCCcE-EEeCCCCc
Confidence 4 4432 1122 445666777875 5444432 12345899999999999999653 34432223
Q ss_pred CHHHHHHHHHHHH---HhCCCCCceeEEEe-c-----CCCcchHHHHHHHHHHhcCcEEeec
Q 007056 258 MPTEFGKLIADIK---ANTPGIENVVISTH-C-----QNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 258 ~P~~v~~li~~l~---~~~~~~~~v~i~~H-~-----HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
.+.++.+-+..++ +.++ . .+-+|+= . =+..|.-.+-+..|++.||+.|=++
T Consensus 292 ~~~~l~~sL~~l~~~r~~~~-~-Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvh 351 (499)
T TIGR00284 292 PLLGLLESIIRFRRASRLLN-V-PLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVV 351 (499)
T ss_pred chHHHHHHHHHHHHHHHhcC-C-cEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEc
Confidence 4455555555554 3454 2 2334431 0 0233444444566788888887443
No 171
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=91.02 E-value=18 Score=39.18 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+++-+.|=-.+|.... .+ ...++.+++... -+|...-|--+ ..+.|.+|++
T Consensus 23 ~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~--------~VPValHLDHg~~~e~i~~Ai~ 94 (347)
T TIGR01521 23 VNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYP--------HIPVVMHQDHGNSPATCQRAIQ 94 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCC--------CCcEEEECCCCCCHHHHHHHHH
Confidence 5788999999999999999988665664321 11 234455554321 02433333333 3455565555
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCC-------C----------
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPE-------D---------- 224 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~e-------d---------- 224 (620)
+ |...|.+=.|.-+ ..+...+.+|+++..++.+++|+..|+. |+- +.| |
T Consensus 95 ~----GFtSVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~Gvs-VEaELG~igg~e~~~~g~~d~~~~~~~~~~ 166 (347)
T TIGR01521 95 L----GFTSVMMDGSLRE---DAKTPADYDYNVRVTAEVVAFAHAVGAS-VEGELGCLGSLETGMGEAEDGHGFEGVLDH 166 (347)
T ss_pred c----CCCEEeecCcCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeecccccccccccccCcccccccch
Confidence 4 8888754332111 1223457899999999999999999874 431 121 2
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCcEEeec--CCcccc----CH----HHHHHHHHHHHHhCCCCCceeEEEecCCCc
Q 007056 225 -AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MP----TEFGKLIADIKANTPGIENVVISTHCQNDL 289 (620)
Q Consensus 225 -~~r~d~e~l~~~~~~~~~aGa~~I~L~--DTvG~~----~P----~~v~~li~~l~~~~~~~~~v~i~~H~HND~ 289 (620)
...|+|+.+.++++ +-|+|.+-++ -.=|.. .| .. .++++.|++.++ ++||.+|+=...
T Consensus 167 ~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~---~vPLVLHGgSG~ 235 (347)
T TIGR01521 167 SQLLTDPEEAADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLP---DTHLVMHGSSSV 235 (347)
T ss_pred hhcCCCHHHHHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcC-HHHHHHHHccCC---CCCEEEeCCCCC
Confidence 22678887777665 4577754443 222332 24 23 345688888875 378998876543
No 172
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.02 E-value=3.9 Score=43.33 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc-----c------ccCHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-----G------ITMPTEF 262 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv-----G------~~~P~~v 262 (620)
.+.+|.++.+.+.++. ..+. |..+.++++- ++..+.+.++.+.++|+.-|+|-|.+ | ...++++
T Consensus 61 l~~~e~~~~~~~I~~~---~~iP-viaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~ 135 (292)
T PRK11320 61 TTLDDVLIDVRRITDA---CDLP-LLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEM 135 (292)
T ss_pred CCHHHHHHHHHHHHhc---cCCC-EEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHH
Confidence 4677777776665443 3454 8889976666 99999999999999999999999987 3 2466777
Q ss_pred HHHHHHHHHhCCCCCceeEEEe----cCCCcchHHHHHHHHHHhcCcEE
Q 007056 263 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 263 ~~li~~l~~~~~~~~~v~i~~H----~HND~GlAvANslaAv~aGA~~V 307 (620)
.+.|+..++.-.+. +..|-.- ..+.+--|+.=+.+..+||||.|
T Consensus 136 ~~kI~Aa~~a~~~~-d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~i 183 (292)
T PRK11320 136 VDRIKAAVDARTDP-DFVIMARTDALAVEGLDAAIERAQAYVEAGADMI 183 (292)
T ss_pred HHHHHHHHHhccCC-CeEEEEecCcccccCHHHHHHHHHHHHHcCCCEE
Confidence 77777777643322 2333211 12345567778888888999887
No 173
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=90.89 E-value=6.4 Score=42.40 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=86.8
Q ss_pred HHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCC--EEEEEec
Q 007056 105 RQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP--RIHTFIA 182 (620)
Q Consensus 105 ~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~--~v~i~~~ 182 (620)
+.|.++|++.|-+|+. .-.++.+++.+++.. .|.|..-+.+..++|+.|++.++..|.+ .|.+.-.
T Consensus 103 d~l~~~~v~~~KIaS~--~~~n~pLL~~~A~~g----------kPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC 170 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSG--EITNAPLLKKIARFG----------KPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHC 170 (329)
T ss_pred HHHHhcCCCEEEECcc--cccCHHHHHHHHhcC----------CcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEE
Confidence 4444555555555543 224577888887741 2678788888999999999999888875 2544322
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEe--------e--c
Q 007056 183 TSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN--------I--P 251 (620)
Q Consensus 183 ~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~-~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~--------L--~ 251 (620)
+| .+-..+++ ++ ...+..+++ .++. |-|+ | +... ..+..+++.+||+.|- + +
T Consensus 171 ~s------~YP~~~~~-~n--L~~I~~Lk~~f~~p-VG~S--d---Ht~G--~~~~~aAvalGA~iIEkH~tldk~~~G~ 233 (329)
T TIGR03569 171 TT------EYPAPFED-VN--LNAMDTLKEAFDLP-VGYS--D---HTLG--IEAPIAAVALGATVIEKHFTLDKNLPGP 233 (329)
T ss_pred CC------CCCCCccc-CC--HHHHHHHHHHhCCC-EEEC--C---CCcc--HHHHHHHHHcCCCEEEeCCChhhcCCCC
Confidence 22 12222222 22 234455554 4554 6664 2 2222 3567788889998552 3 5
Q ss_pred CCccccCHHHHHHHHHHHHHh
Q 007056 252 DTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 252 DTvG~~~P~~v~~li~~l~~~ 272 (620)
|-.=.+.|.++.++++.++..
T Consensus 234 D~~~Sl~p~el~~lv~~ir~~ 254 (329)
T TIGR03569 234 DHKASLEPDELKEMVQGIRNV 254 (329)
T ss_pred ChhhcCCHHHHHHHHHHHHHH
Confidence 777789999999999999874
No 174
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=90.80 E-value=5.3 Score=42.67 Aligned_cols=142 Identities=18% Similarity=0.135 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
..|+.++..++++.+.+.|++.|-+ |=|-..++-.+.++.+.+.. ++. .+...+ +---++..++.++
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~--------gi~-~v~itT--NG~ll~~~~~~L~ 109 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALP--------GIE-DIALTT--NGLLLARHAKDLK 109 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcC--------CCC-eEEEEe--CchhHHHHHHHHH
Confidence 3589999999999999999998877 34655554345566554421 110 121111 1112233456677
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc
Q 007056 171 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~ 246 (620)
.+|.+.|.+.+-+.+-.....+.. ....++.+.+.++.+++.|+..|..+..-....+.+.+.++++.+.+.|++
T Consensus 110 ~~gl~~v~ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~ 184 (334)
T TIGR02666 110 EAGLKRVNVSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVT 184 (334)
T ss_pred HcCCCeEEEecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCe
Confidence 789998887665433211122221 012355666777777888764233322111124556677777777777764
No 175
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.80 E-value=2.6 Score=44.31 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccc-----------cCHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGI-----------TMPTEF 262 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~-----------~~P~~v 262 (620)
.|++|+++.+++.++- -.+. |..+.+.++-. +..+.+.++.+.++|+.-++|-|.++- ..++++
T Consensus 61 ~t~~e~~~~vrrI~~a---~~lP-v~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~ 135 (289)
T COG2513 61 TTLDEVLADARRITDA---VDLP-VLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEM 135 (289)
T ss_pred ccHHHHHHHHHHHHhh---cCCc-eEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHH
Confidence 3577777766655443 3344 77888655444 999999999999999999999999984 467788
Q ss_pred HHHHHHHHHhCCCCCceeEE----EecCCCcchHHHHHHHHHHhcCcEE
Q 007056 263 GKLIADIKANTPGIENVVIS----THCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 263 ~~li~~l~~~~~~~~~v~i~----~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+.|+.+++.-++.+ ..|- ...+.-+.-|+.-+.+-++||||.|
T Consensus 136 v~rIkAa~~a~~~~~-fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~i 183 (289)
T COG2513 136 VDRIKAAVEARRDPD-FVIIARTDALLVEGLDDAIERAQAYVEAGADAI 183 (289)
T ss_pred HHHHHHHHHhccCCC-eEEEeehHHHHhccHHHHHHHHHHHHHcCCcEE
Confidence 888888887765422 2222 2334447778888999999999987
No 176
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.69 E-value=15 Score=38.70 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=49.8
Q ss_pred EEeecccchhhHHHHHHHHhcCC--CCEEEEEecCCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCC
Q 007056 151 ICGLSRCNERDIKTAWEAVKYAK--RPRIHTFIATSGI-HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAG 226 (620)
Q Consensus 151 i~~~~r~~~~dI~~a~eal~~ag--~~~v~i~~~~Sd~-h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~ 226 (620)
+.-+.-...+++..+.+.+.+++ .+.|.+-+++-.. ..-..+..+.+ .+.+.++.+|+. ++. |.+-.
T Consensus 94 ~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~----~~~eiv~~vr~~~~~p-v~vKi---- 164 (300)
T TIGR01037 94 IASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPE----LSADVVKAVKDKTDVP-VFAKL---- 164 (300)
T ss_pred EEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHH----HHHHHHHHHHHhcCCC-EEEEC----
Confidence 33333345677776666666542 6666654332211 01112223333 344555555543 333 33321
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCc
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTV 254 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTv 254 (620)
+.+.+...++++.+.++|+|.|.+..|+
T Consensus 165 ~~~~~~~~~~a~~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 165 SPNVTDITEIAKAAEEAGADGLTLINTL 192 (300)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEccC
Confidence 1234566788888889999999886554
No 177
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.65 E-value=16 Score=35.72 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec-----CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGF-----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 168 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGf-----P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 168 (620)
.+....-.+.++.+.+.|++.|+++. ....+-.++.++.|.+.. +. +..+.+.-.+. ..-++.
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~--------~~~v~l~~~d~---~~~~~~ 75 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DL--------PLDVHLMVENP---ERYIEA 75 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CC--------cEEEEeeeCCH---HHHHHH
Confidence 45566667788999999999999953 112222346677776542 11 11111221121 222333
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
...+|.+.|.+....+ +...+.++.++..|.. +-++.. ..++.+.+.++.+ +++.|
T Consensus 76 ~~~~g~dgv~vh~~~~----------------~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~-----~~d~i 131 (211)
T cd00429 76 FAKAGADIITFHAEAT----------------DHLHRTIQLIKELGMK-AGVALN--PGTPVEVLEPYLD-----EVDLV 131 (211)
T ss_pred HHHcCCCEEEECccch----------------hhHHHHHHHHHHCCCe-EEEEec--CCCCHHHHHHHHh-----hCCEE
Confidence 3456889876543321 2234557888888874 444331 1123344433322 25655
Q ss_pred ee----cCCccccCHHHHHHHHHHHHHhCCCC-CceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 249 NI----PDTVGITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 249 ~L----~DTvG~~~P~~v~~li~~l~~~~~~~-~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+ +-+.|...|+...+.++.+++.++.. .++++.+ +.|....|.-.++++||+.|
T Consensus 132 ~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v----~GGI~~env~~~~~~gad~i 191 (211)
T cd00429 132 LVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEV----DGGINLETIPLLAEAGADVL 191 (211)
T ss_pred EEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 33 22344455666677777777665310 0134433 35777889889999999976
No 178
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=90.63 E-value=1 Score=44.58 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccc
Q 007056 235 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 314 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~Gl 314 (620)
+-++++.++|++.|.| |-.....|..+.++|+.+++++ ..+-.-|-+ +.+++.|.++|+|.|-+|+.|+
T Consensus 55 ~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~-----~l~MADist-----~ee~~~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 55 KEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY-----QLVMADIST-----LEEAINAAELGFDIIGTTLSGY 123 (192)
T ss_dssp HHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT-----SEEEEE-SS-----HHHHHHHHHTT-SEEE-TTTTS
T ss_pred HHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC-----cEEeeecCC-----HHHHHHHHHcCCCEEEcccccC
Confidence 3456677899999886 6677788899999999999986 234444433 7899999999999999999997
Q ss_pred cC
Q 007056 315 GE 316 (620)
Q Consensus 315 GE 316 (620)
=+
T Consensus 124 T~ 125 (192)
T PF04131_consen 124 TP 125 (192)
T ss_dssp ST
T ss_pred CC
Confidence 44
No 179
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.62 E-value=2.8 Score=43.12 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCC-cc-----ccCHHHHHHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT-VG-----ITMPTEFGKLIA 267 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DT-vG-----~~~P~~v~~li~ 267 (620)
.|.+|.++.+.+.++.. .+ .|..+.++++-.++..+.+.++.+.++|+.-|+|-|. .| ...++++.+.|+
T Consensus 52 lt~~e~~~~~~~I~~~~---~i-Pv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~ 127 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV---SI-PVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIR 127 (238)
T ss_dssp S-HHHHHHHHHHHHHHS---SS-EEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh---cC-cEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHH
Confidence 46788877776666554 35 4889997776667999999999999999999999999 33 447788888888
Q ss_pred HHHHhCCCCCceeEEEecC------CCcchHHHHHHHHHHhcCcEE
Q 007056 268 DIKANTPGIENVVISTHCQ------NDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 268 ~l~~~~~~~~~v~i~~H~H------ND~GlAvANslaAv~aGA~~V 307 (620)
.+++.-.+.+ ..|-.-+- ..+--|+.=+.+..+||||.|
T Consensus 128 Aa~~a~~~~~-~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~i 172 (238)
T PF13714_consen 128 AAVDARRDPD-FVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMI 172 (238)
T ss_dssp HHHHHHSSTT-SEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHhccCCe-EEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 8887543322 33332221 223345666777888899876
No 180
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=90.61 E-value=8.4 Score=39.60 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=104.4
Q ss_pred HHHHHHhHcCCCEEEEec--CC------CChhHHHHHHHHHHHhcccccccCCccceEEeecccchh-------hHHHHH
Q 007056 102 DIARQLAKLGVDIIEAGF--PA------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------DIKTAW 166 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGf--P~------~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~-------dI~~a~ 166 (620)
..++.+.++|++.+|+-. |. .++++.+.++.+.+..+-.+. ...|-..-++...++ .+++++
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls---~h~p~~~nl~s~d~~~r~~~~~~l~~~i 90 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVS---VHAPYLINLASPDKEKVEKSIERLIDEI 90 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEE---EECCceecCCCCCHHHHHHHHHHHHHHH
Confidence 456777889999999942 31 223445666665554221110 000100111111111 233455
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH--cCCCEEEEcCCC--C----CCCCHHHHHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS--LGCDDVEFSPED--A----GRSDRKFLYEILG 238 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~--~G~~~V~f~~ed--~----~r~d~e~l~~~~~ 238 (620)
+..+..|.+.|.+..... ...++++.++.+.+.++.+-+ .|+ .+..|- . .-.+++.+.++++
T Consensus 91 ~~A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv---~l~lEn~~~~~~~~~~~~~~~~~ll~ 160 (273)
T smart00518 91 KRCEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGV---VILLETTAGKGSQIGSTFEDLKEIID 160 (273)
T ss_pred HHHHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCc---EEEEeccCCCCCccCCCHHHHHHHHH
Confidence 555566888776543321 134566777776666665543 343 333221 1 1135677777776
Q ss_pred HHHHcCCcEEeec-CCcc-------ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 239 EVIKVGATTLNIP-DTVG-------ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 239 ~~~~aGa~~I~L~-DTvG-------~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
.+... +.+.+| |+.= ...|+.+.++++.+.+.++. +-...+|.||..|. .|- ..| .
T Consensus 161 ~v~~~--~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~--~~I~~vHl~D~~~~----------~g~-~~d-~ 224 (273)
T smart00518 161 LIKEL--DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGL--EYLKAIHLNDSKIE----------LGS-GKD-R 224 (273)
T ss_pred hcCCC--CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCH--HhhceEEeecCCCc----------cCC-CCc-c
Confidence 55321 223333 3332 12477788888877665531 13468999998762 121 111 1
Q ss_pred cccccCCcCcccHHHHHHHHHhcc
Q 007056 311 INGIGERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 311 i~GlGERaGNa~lEevv~~L~~~~ 334 (620)
-..+|+ |+.+.+.+...|..++
T Consensus 225 H~~~G~--G~id~~~~~~~l~~~~ 246 (273)
T smart00518 225 HENLGE--GYIGFEPFRLLMADKR 246 (273)
T ss_pred ccCCCC--CCCChHHHHHHhhChh
Confidence 223444 8999999888887653
No 181
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=90.57 E-value=8.8 Score=39.93 Aligned_cols=182 Identities=17% Similarity=0.203 Sum_probs=105.0
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEEec--CCCChhH--------HHHHHHHHHHhcccccccCCccceEEeecccchh
Q 007056 91 PGATLTSKEKLDIARQLAKLGVDIIEAGF--PAASKED--------FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER 160 (620)
Q Consensus 91 ~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d--------~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~ 160 (620)
|...=+.++-+++|+.|.+.|++..-.+. |..+|.. .+.+++.+++. |+ +.++. -....
T Consensus 32 pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~--------Gl-~~~t~--~~d~~ 100 (260)
T TIGR01361 32 PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEH--------GL-PVVTE--VMDPR 100 (260)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHh--------CC-CEEEe--eCChh
Confidence 33344788899999999999988655432 5555422 23444444432 22 11211 12344
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHH
Q 007056 161 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEV 240 (620)
Q Consensus 161 dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~ 240 (620)
.++.+.+ . ++.+.| +..+... .+.++.+.+.|.. |.++- +.-.+++.+...++.+
T Consensus 101 ~~~~l~~----~-~d~lkI--~s~~~~n---------------~~LL~~~a~~gkP-Vilk~--G~~~t~~e~~~Ave~i 155 (260)
T TIGR01361 101 DVEIVAE----Y-ADILQI--GARNMQN---------------FELLKEVGKQGKP-VLLKR--GMGNTIEEWLYAAEYI 155 (260)
T ss_pred hHHHHHh----h-CCEEEE--CcccccC---------------HHHHHHHhcCCCc-EEEeC--CCCCCHHHHHHHHHHH
Confidence 4444433 2 455444 3322111 2356666677875 77743 2234678888888888
Q ss_pred HHcCCcEEeecCC-c-cc-cCHHHHH--HHHHHHHHhCCCCCceeEEE-ecC--CCcchHHHHHHHHHHhcCc--EEeec
Q 007056 241 IKVGATTLNIPDT-V-GI-TMPTEFG--KLIADIKANTPGIENVVIST-HCQ--NDLGLSTANTIAGACAGAR--QVEVT 310 (620)
Q Consensus 241 ~~aGa~~I~L~DT-v-G~-~~P~~v~--~li~~l~~~~~~~~~v~i~~-H~H--ND~GlAvANslaAv~aGA~--~Vd~T 310 (620)
.+.|...|.||.. + .+ -.|...- ..+..+++.++ +||++ =.| .+.-+...-+++|+..||+ .|+.-
T Consensus 156 ~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~----~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 156 LSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETH----LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred HHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhC----CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeC
Confidence 8999988888885 2 33 3333322 34566776552 55777 344 3233446778899999999 56654
Q ss_pred cc
Q 007056 311 IN 312 (620)
Q Consensus 311 i~ 312 (620)
+.
T Consensus 232 ~t 233 (260)
T TIGR01361 232 PD 233 (260)
T ss_pred CC
Confidence 44
No 182
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.42 E-value=2.2 Score=45.43 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHHHHHHHHH
Q 007056 226 GRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGAC 301 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaAv~ 301 (620)
+..|.+-+.++++.+++.|++-|.++-|+| .++.+|-.++++...+...+ +++|-+|+ +++.--++.-+..|-+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--rvpvi~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG--RVPVFVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 56899999999999988765 57777777 4788999999999999
Q ss_pred hcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 302 AGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 302 aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
+||+.|=..---+- ..+-++++..++
T Consensus 102 ~Gad~vlv~~P~y~----~~~~~~l~~yf~ 127 (309)
T cd00952 102 LGADGTMLGRPMWL----PLDVDTAVQFYR 127 (309)
T ss_pred hCCCEEEECCCcCC----CCCHHHHHHHHH
Confidence 99999876644321 123355555443
No 183
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.42 E-value=2.3 Score=43.73 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
.+.+|++..+....+-+.. . .|..+.++++-.+++.+.+.++.+.++||+.|+|-|.. ++.+.|+.+++.
T Consensus 55 vtl~em~~~~~~I~r~~~~--~-pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a 124 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPL--A-LIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAA 124 (240)
T ss_pred cCHHHHHHHHHHHHhhCCC--C-CEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHc
Confidence 4567766665554443321 2 37788888877788999999999999999999999973 556677777764
No 184
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.38 E-value=4.6 Score=42.71 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=51.3
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEE--cCCCCCCCCHHHHH
Q 007056 158 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEF--SPEDAGRSDRKFLY 234 (620)
Q Consensus 158 ~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f--~~ed~~r~d~e~l~ 234 (620)
..+++..+.+.+.+.+.+.|.+-++.-..-.....+....+.-+.+.+.++.+++. ... |.. .+ +.+.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P-v~vKl~~------~~~~~~ 183 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP-VIAKLTP------NITDIR 183 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC-eEEECCC------CchhHH
Confidence 56666666666655677766664443222111122222222234455555555543 232 333 33 334677
Q ss_pred HHHHHHHHcCCcEEeecCCccc
Q 007056 235 EILGEVIKVGATTLNIPDTVGI 256 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~ 256 (620)
++++.+.++|++.|.+-.|...
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 184 EIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred HHHHHHHHcCCCEEEEeccccc
Confidence 8899999999999998777743
No 185
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=90.34 E-value=6.5 Score=40.10 Aligned_cols=211 Identities=15% Similarity=0.122 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhH---HHHHHHHHHHhcccccccCCccceEEeecc----cc-------h
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKED---FEAVRTIAKEVGNAVDAESGYVPVICGLSR----CN-------E 159 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d---~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r----~~-------~ 159 (620)
..+.+++++.+ .++|++.||+.-+...+.+ .+.++.+.+..+..+ ..+..+.. .. .
T Consensus 14 ~~~l~~~l~~~---~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i-------~~~~~~~~~~~~~~~~~~~~~~ 83 (274)
T COG1082 14 ELPLEEILRKA---AELGFDGVELSPGDLFPADYKELAELKELLADYGLEI-------TSLAPFSNNLLSPDEEEREEAL 83 (274)
T ss_pred CCCHHHHHHHH---HHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEE-------EeecccCCCcCCCchhhHHHHH
Confidence 35566655554 5668999999742223333 455555555422211 11111111 11 1
Q ss_pred hhHHHHHHHHhcCCCCEEEEEecCCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC--C-CCCCCCHHHHHH
Q 007056 160 RDIKTAWEAVKYAKRPRIHTFIATSGIHMEH-KLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E-DAGRSDRKFLYE 235 (620)
Q Consensus 160 ~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~-~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~--e-d~~r~d~e~l~~ 235 (620)
+.++.+++.....|.+.|.++.+....+... .-....+...+.+.++.++|++.|+. +.+-+ . .....+....
T Consensus 84 ~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~-l~~e~~~~~~~~~~~~~~~-- 160 (274)
T COG1082 84 EELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIG-LALENHHHPGNVVETGADA-- 160 (274)
T ss_pred HHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCc-eEEeecCCccceeecCHHH--
Confidence 2223355555566888777665443322211 11123366788888999999998875 54433 1 1112222223
Q ss_pred HHHHHHHcCCcEE-eecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccc
Q 007056 236 ILGEVIKVGATTL-NIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 314 (620)
Q Consensus 236 ~~~~~~~aGa~~I-~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~Gl 314 (620)
++.+.+.+-+.+ .+-||.=...=.. +.+..+++..+ -...+|+||..+-... .+..+ .--.-.
T Consensus 161 -~~~~~~~~~~~v~~~lD~~H~~~~~~--d~~~~~~~~~~----rI~hvH~kD~~~~~~~----~~~~~-----~~~~~p 224 (274)
T COG1082 161 -LDLLREVDSPNVGLLLDTGHAFFAGE--DPLEAIRKLGD----RIGHVHLKDADGPTLD----IVNFL-----GQHLPP 224 (274)
T ss_pred -HHHHHhcCCCceEEEEecCchhhccC--CHHHHHHHhhc----ceeEEEEeecCcchhc----ccCCC-----cceeCC
Confidence 333334433333 3345543332222 45666666554 3579999999986544 11111 222333
Q ss_pred cCCcCcccHHHHHHHHHhccc
Q 007056 315 GERAGNASLEEVVMAFKCRGE 335 (620)
Q Consensus 315 GERaGNa~lEevv~~L~~~~~ 335 (620)
|+ |..+..++...|...++
T Consensus 225 G~--G~id~~~i~~~L~~~gy 243 (274)
T COG1082 225 GD--GDIDFKAIFSALREAGY 243 (274)
T ss_pred CC--CCcCHHHHHHHHHHcCC
Confidence 44 89999999999998664
No 186
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=90.32 E-value=28 Score=37.18 Aligned_cols=165 Identities=16% Similarity=0.096 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChh-HH----HHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-DF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+++.+.|=-.+|..... .. ..++.+++.. .-+|...=|--+ ..+.+.+|++
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~--------~~VPValHLDHg~~~e~i~~ai~ 95 (307)
T PRK05835 24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERY--------PHIPVALHLDHGTTFESCEKAVK 95 (307)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhc--------CCCeEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999886656543211 11 2344444431 012443333333 3445555555
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCC--------CCCCCHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--------AGRSDRKFL 233 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed--------~~r~d~e~l 233 (620)
+ |...|.+=.| ..+.||+++..++++++|+..|.. |+- +-|| ...|+|+..
T Consensus 96 ~----GftSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~~~~TdPeeA 160 (307)
T PRK05835 96 A----GFTSVMIDAS----------HHAFEENLELTSKVVKMAHNAGVS-VEAELGRLMGIEDNISVDEKDAVLVNPKEA 160 (307)
T ss_pred c----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEecccCCccCCcccccccccCCCHHHH
Confidence 4 8888754333 356789999999999999999974 432 2232 226788877
Q ss_pred HHHHHHHHHcCCcEEeec--CCcccc----CHHHHHHHHHHHHHhCCCCCceeEEEecCCC
Q 007056 234 YEILGEVIKVGATTLNIP--DTVGIT----MPTEFGKLIADIKANTPGIENVVISTHCQND 288 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~--DTvG~~----~P~~v~~li~~l~~~~~~~~~v~i~~H~HND 288 (620)
.++++ +-|+|.+-++ -.=|.. .|.==-++++.|++.+ ++||.+|+=..
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~----~iPLVLHGgSG 214 (307)
T PRK05835 161 EQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT----NIPLVLHGASA 214 (307)
T ss_pred HHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh----CCCEEEeCCCC
Confidence 77665 5688864443 233332 2444456788888876 37899887544
No 187
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.26 E-value=26 Score=36.71 Aligned_cols=196 Identities=13% Similarity=0.111 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHhHc-CCCEEEE-e----cCCCChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKL-GVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~-Gvd~IEv-G----fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 166 (620)
.+..+.-.++++.|.+. |++-|=+ | |+.-+.+|+ +.++...+... +-++.|++.+..+.++.-...
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-------~~~~viagv~~~~~~~ai~~a 89 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-------GKVTLIAHVGSLNLKESQELA 89 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCeEEeccCCCCHHHHHHHH
Confidence 47888889999999998 9998855 3 355556665 34455555432 234678887766655544333
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHcC
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG--RSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~--r~d~e~l~~~~~~~~~aG 244 (620)
+..+++|++.+-+.-|.. ++.+.+++++-..+.++... ++.-+.|+....+ ..+++.+.+++ + -
T Consensus 90 ~~a~~~Gad~v~~~~P~y-------~~~~~~~i~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~----~-~ 155 (288)
T cd00954 90 KHAEELGYDAISAITPFY-------YKFSFEEIKDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELF----E-I 155 (288)
T ss_pred HHHHHcCCCEEEEeCCCC-------CCCCHHHHHHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHh----c-C
Confidence 445678999887665542 34577777766665554321 3444556554433 44555555444 3 4
Q ss_pred CcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHH
Q 007056 245 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 324 (620)
Q Consensus 245 a~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lE 324 (620)
...+.+.|+.|- ...+.+++ +..++ +. .-+-++++ ..+.++..|++.. +.| .+|.-.|
T Consensus 156 pnivgiK~s~~d--~~~~~~~~----~~~~~--~~-~v~~G~d~------~~~~~~~~G~~G~---i~~----~~n~~P~ 213 (288)
T cd00954 156 PNVIGVKFTATD--LYDLERIR----AASPE--DK-LVLNGFDE------MLLSALALGADGA---IGS----TYNVNGK 213 (288)
T ss_pred CCEEEEEeCCCC--HHHHHHHH----HhCCC--Cc-EEEEechH------HHHHHHHcCCCEE---EeC----hhhhCHH
Confidence 589999999884 34444443 33442 11 12233332 2345678897654 333 4677777
Q ss_pred HHHHHHHh
Q 007056 325 EVVMAFKC 332 (620)
Q Consensus 325 evv~~L~~ 332 (620)
.++...+.
T Consensus 214 ~~~~l~~~ 221 (288)
T cd00954 214 RYRKIFEA 221 (288)
T ss_pred HHHHHHHH
Confidence 76665554
No 188
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.18 E-value=4.4 Score=42.95 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc-----------ccCHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEF 262 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG-----------~~~P~~v 262 (620)
.+.+|.++.+.++++. ..+. |..+.++++-..++ +.+.++.+.++|+.-|+|-|.++ ...++++
T Consensus 60 l~~~e~~~~~~~I~~~---~~lP-v~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~ 134 (294)
T TIGR02319 60 TSVSEQAINAKNIVLA---VDVP-VIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEM 134 (294)
T ss_pred CCHHHHHHHHHHHHhc---cCCC-EEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHH
Confidence 4577777766655443 3454 88899777766666 88999999999999999999874 3466777
Q ss_pred HHHHHHHHHhCCCCCceeEEEe----cCCCcchHHHHHHHHHHhcCcEE
Q 007056 263 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 263 ~~li~~l~~~~~~~~~v~i~~H----~HND~GlAvANslaAv~aGA~~V 307 (620)
.+.|+..++.-.+. +..|-.- ...++--++.=+.+..++|||.|
T Consensus 135 ~~kI~Aa~~A~~~~-d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~i 182 (294)
T TIGR02319 135 TGKIEAAVEAREDE-DFTIIARTDARESFGLDEAIRRSREYVAAGADCI 182 (294)
T ss_pred HHHHHHHHHhccCC-CeEEEEEecccccCCHHHHHHHHHHHHHhCCCEE
Confidence 77777777643221 2222111 12345567777777888888876
No 189
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=90.04 E-value=24 Score=37.11 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=74.5
Q ss_pred HHHHHHhHcCCCEEEEec----CCC-C--------------------hhHHHHHHHHHHHhcccccccCCccceEEeecc
Q 007056 102 DIARQLAKLGVDIIEAGF----PAA-S--------------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 156 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGf----P~~-s--------------------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r 156 (620)
++++.+.+.|+..|++|. |.. + +.-..+++.+....... . .|.++-+.-
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~-----~-~p~i~si~g 100 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEF-----D-TPIIANVAG 100 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhcc-----C-CcEEEEecc
Confidence 567788889999999984 111 1 11123445544422110 1 234444433
Q ss_pred cchhhHHHHHHHHhcCC-CCEEEEEecCCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEE--cCCCCCCCCHH
Q 007056 157 CNERDIKTAWEAVKYAK-RPRIHTFIATSGI-HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEF--SPEDAGRSDRK 231 (620)
Q Consensus 157 ~~~~dI~~a~eal~~ag-~~~v~i~~~~Sd~-h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f--~~ed~~r~d~e 231 (620)
...++...+.+.+..+| .+.|.+-+++-.. |--..+..+. +.+.+.++.+|+. .+. |.+ ++ +.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~----~~~~eiv~~vr~~~~~p-v~vKl~~------~~~ 169 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDP----ELAYEVVKAVKEVVKVP-VIVKLTP------NVT 169 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCH----HHHHHHHHHHHHhcCCC-EEEEcCC------Cch
Confidence 45677777777778888 8988775432110 1001222332 3444555555544 332 333 43 234
Q ss_pred HHHHHHHHHHHcCCcEEeecCCc
Q 007056 232 FLYEILGEVIKVGATTLNIPDTV 254 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTv 254 (620)
.+.++++.+.++|+|.|.+-.|+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccc
Confidence 67788899999999988876554
No 190
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=89.92 E-value=8.9 Score=41.86 Aligned_cols=114 Identities=15% Similarity=0.169 Sum_probs=75.4
Q ss_pred ceEEeecc-cchhhHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCEEEEcCCCC
Q 007056 149 PVICGLSR-CNERDIKTAWEAVKYAKRPRIHTFI-ATSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDA 225 (620)
Q Consensus 149 ~~i~~~~r-~~~~dI~~a~eal~~ag~~~v~i~~-~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~-~G~~~V~f~~ed~ 225 (620)
|++..-+. +..+++..|++.+...|.+.|.+.- .+|.. .....+.++ ..++..+|+ .++. |.|++ |=
T Consensus 227 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~y------p~~~~~~ld--l~~i~~lk~~~~~P-V~~d~-~H 296 (360)
T PRK12595 227 PVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTY------EKATRNTLD--ISAVPILKQETHLP-VMVDV-TH 296 (360)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCC------CCCCCCCcC--HHHHHHHHHHhCCC-EEEeC-CC
Confidence 55655555 5789999999999888887665553 33311 000001111 123444444 5776 88866 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEE----------eecCCccccCHHHHHHHHHHHHHh
Q 007056 226 GRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I----------~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
+--+.+++..+..+++.+|||-+ ..+|-.=.++|+++.++++.+++-
T Consensus 297 s~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i~~~ 353 (360)
T PRK12595 297 STGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDELKPL 353 (360)
T ss_pred CCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHHHHH
Confidence 33356788889999999999633 357888889999999999999874
No 191
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.87 E-value=1.1 Score=50.52 Aligned_cols=74 Identities=20% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
+...+.++.+.++|++.|.| |+.- ..|..+.++|+++++.+|+ +++-. +.++-...+..++++||+.|.+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~---~~vi~----g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLG---VPIVA----GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCC---CeEEE----eccCCHHHHHHHHHhCCCEEEEC
Confidence 34568888999999999888 6666 6779999999999999985 45554 56677778899999999999876
Q ss_pred ccc
Q 007056 311 ING 313 (620)
Q Consensus 311 i~G 313 (620)
+.|
T Consensus 295 ~g~ 297 (475)
T TIGR01303 295 VGP 297 (475)
T ss_pred CcC
Confidence 554
No 192
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=89.79 E-value=5.4 Score=39.82 Aligned_cols=190 Identities=20% Similarity=0.192 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
.+.++-+++++.+... ++.||+|.|-....-.++++.+.+.. .+.-| ..+.-. .......++.+..+|+
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~~G~~~v~~ir~~~--~i~~D----~k~~di----~~~~~~~~~~~~~~ga 81 (215)
T PRK13813 13 TDRERALKIAEELDDY-VDAIKVGWPLVLASGLGIIEELKRYA--PVIAD----LKVADI----PNTNRLICEAVFEAGA 81 (215)
T ss_pred CCHHHHHHHHHhcccc-CCEEEEcHHHHHhhCHHHHHHHHhcC--CEEEE----eecccc----HHHHHHHHHHHHhCCC
Confidence 4677778888877554 68999998753222236666666531 11100 011000 0111222233445688
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCCCC-CCCC-HHHHHHHHHHHHHcCCcEEeec
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDA-GRSD-RKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~ed~-~r~d-~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
+.|.+..-... +.+.++++++++.|... +...+... .... .+++..++....+.|.+...+.
T Consensus 82 d~vtvh~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 82 WGIIVHGFTGR---------------DSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred CEEEEcCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence 87765433221 23556788888888752 13333211 1111 3567777788888998765422
Q ss_pred CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHH--HHHHHHHhcCcEEeeccccccCCc--CcccHHHHH
Q 007056 252 DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA--NTIAGACAGARQVEVTINGIGERA--GNASLEEVV 327 (620)
Q Consensus 252 DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA--NslaAv~aGA~~Vd~Ti~GlGERa--GNa~lEevv 327 (620)
- ..+ +.++.+++..+. ++.+ =|-|.... |...++++||+.+- .| |+ ...+.++.+
T Consensus 147 ~----~~~----~~i~~l~~~~~~--~~~i-----vdgGI~~~g~~~~~~~~aGad~iV---~G---r~I~~~~d~~~~~ 205 (215)
T PRK13813 147 A----TRP----ERVRYIRSRLGD--ELKI-----ISPGIGAQGGKAADAIKAGADYVI---VG---RSIYNAADPREAA 205 (215)
T ss_pred C----Ccc----hhHHHHHHhcCC--CcEE-----EeCCcCCCCCCHHHHHHcCCCEEE---EC---cccCCCCCHHHHH
Confidence 1 112 344566665542 1111 22343333 47889999999873 23 22 223455555
Q ss_pred HHHH
Q 007056 328 MAFK 331 (620)
Q Consensus 328 ~~L~ 331 (620)
..|+
T Consensus 206 ~~l~ 209 (215)
T PRK13813 206 KAIN 209 (215)
T ss_pred HHHH
Confidence 5554
No 193
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=89.77 E-value=20 Score=36.89 Aligned_cols=179 Identities=20% Similarity=0.181 Sum_probs=104.9
Q ss_pred HHHHhHcCCCEEEEec---------CCCCh---h-HHHHHHHHHHHhcccccccCCccceEE----eecccchhhHHHHH
Q 007056 104 ARQLAKLGVDIIEAGF---------PAASK---E-DFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 166 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGf---------P~~s~---~-d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 166 (620)
++.+.++|++.|=+|. |-... + ..+.++.|..... .|.++ |++ ...++.+.+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~---------~Pv~~D~~~G~g--~~~~~~~~v 90 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVD---------LPVIADADTGYG--NALNVARTV 90 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhcc---------CCEEEEcCCCCC--CHHHHHHHH
Confidence 6777888999998863 32211 1 2345555555321 13222 232 445566666
Q ss_pred HHHhcCCCCEEEEEecCCHHHHH---HHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCCCCC---CCCHHHHHHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHME---HKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAG---RSDRKFLYEILGE 239 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~---~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~ed~~---r~d~e~l~~~~~~ 239 (620)
+.+..+|+..|++-....+-++- .+.-.+.+|..++++.+++.+.+. .+. |.--. |+. ....+..++-+++
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiART-Da~~~~~~~~~eai~Ra~a 168 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIART-DALLAGEEGLDEAIERAKA 168 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEc-CchhccCCCHHHHHHHHHH
Confidence 66667899999986555432221 122348899999988887777763 221 22222 222 2467889999999
Q ss_pred HHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 240 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 240 ~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
..++|||.+.++ |...++++.++.+. .+ .|+-+....... .-+.-.--+.|+++|-
T Consensus 169 y~~AGAD~v~v~---~~~~~~~~~~~~~~----~~----~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~ 224 (243)
T cd00377 169 YAEAGADGIFVE---GLKDPEEIRAFAEA----PD----VPLNVNMTPGGN--LLTVAELAELGVRRVS 224 (243)
T ss_pred HHHcCCCEEEeC---CCCCHHHHHHHHhc----CC----CCEEEEecCCCC--CCCHHHHHHCCCeEEE
Confidence 999999999986 33367666666554 32 456555444322 1123333345777663
No 194
>PRK15108 biotin synthase; Provisional
Probab=89.75 E-value=2 Score=46.53 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHH-HH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSP--EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD-IK 270 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~--ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~-l~ 270 (620)
++.||+++. ++.+++.|+..++... ++....+.+++.++++.+.+.|+ .++.|+|.++++++.+|.+. +.
T Consensus 76 ls~eEI~~~----a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i---~v~~s~G~ls~e~l~~LkeAGld 148 (345)
T PRK15108 76 MEVEQVLES----ARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGL---ETCMTLGTLSESQAQRLANAGLD 148 (345)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCC---EEEEeCCcCCHHHHHHHHHcCCC
Confidence 566666554 4556678887665421 12234467999999999988775 34578999998777776544 22
Q ss_pred H------hCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 271 A------NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 271 ~------~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
. -.|+ .-=.+|++.++---+.....|.++|...--+-+.|+|| ..|+++..+.
T Consensus 149 ~~n~~leT~p~---~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE-----t~ed~v~~~~ 207 (345)
T PRK15108 149 YYNHNLDTSPE---FYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE-----TVKDRAGLLL 207 (345)
T ss_pred EEeeccccChH---hcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC-----CHHHHHHHHH
Confidence 0 0111 11134566677777888888888998655567999998 3455555444
No 195
>PRK15452 putative protease; Provisional
Probab=89.74 E-value=2.9 Score=46.89 Aligned_cols=145 Identities=15% Similarity=0.112 Sum_probs=86.9
Q ss_pred eEEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-CCCCC
Q 007056 150 VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRS 228 (620)
Q Consensus 150 ~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-d~~r~ 228 (620)
.+.+.+. +.+.++.|++ +|++.|-+-.+...... ..-+.+. +.+.+++++|+++|.+ |.+... -....
T Consensus 5 eLlapag-~~e~l~aAi~----~GADaVY~G~~~~~~R~-~~~~f~~----edl~eav~~ah~~g~k-vyvt~n~i~~e~ 73 (443)
T PRK15452 5 ELLSPAG-TLKNMRYAFA----YGADAVYAGQPRYSLRV-RNNEFNH----ENLALGINEAHALGKK-FYVVVNIAPHNA 73 (443)
T ss_pred EEEEECC-CHHHHHHHHH----CCCCEEEECCCccchhh-hccCCCH----HHHHHHHHHHHHcCCE-EEEEecCcCCHH
Confidence 4444432 3344444444 48998755333222111 1123444 3577899999999975 544321 12234
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH---HHhcCc
Q 007056 229 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG---ACAGAR 305 (620)
Q Consensus 229 d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA---v~aGA~ 305 (620)
+.+.+.+.++.+.++|+|.|.+.| .| ++..+++..|+. + .|=|..|-+-|+.++ .+.|++
T Consensus 74 el~~~~~~l~~l~~~gvDgvIV~d-~G---------~l~~~ke~~p~l---~----ih~stqlni~N~~a~~f~~~lG~~ 136 (443)
T PRK15452 74 KLKTFIRDLEPVIAMKPDALIMSD-PG---------LIMMVREHFPEM---P----IHLSVQANAVNWATVKFWQQMGLT 136 (443)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcC-HH---------HHHHHHHhCCCC---e----EEEEecccCCCHHHHHHHHHCCCc
Confidence 567788889999999999999988 44 456777777752 2 344566666666543 355888
Q ss_pred EEeeccccccCCcCcccHHHHHHHH
Q 007056 306 QVEVTINGIGERAGNASLEEVVMAF 330 (620)
Q Consensus 306 ~Vd~Ti~GlGERaGNa~lEevv~~L 330 (620)
+|-.+- -.+++|+-...
T Consensus 137 rvvLSr--------ELsl~EI~~i~ 153 (443)
T PRK15452 137 RVILSR--------ELSLEEIEEIR 153 (443)
T ss_pred EEEECC--------cCCHHHHHHHH
Confidence 875544 46777766543
No 196
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=89.68 E-value=11 Score=38.43 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCcEEeecCCcccc---CHHHHHHHHHHHHHhCCC--CCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 235 EILGEVIKVGATTLNIPDTVGIT---MPTEFGKLIADIKANTPG--IENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~~---~P~~v~~li~~l~~~~~~--~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
.-++.+++.||+.|-+.=..|.. ..+.+++-|+.+++..++ .=+++|+.-.=+|--+ ..-+..++++||+.|-+
T Consensus 81 ~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~-~~A~~i~~~aGAdFVKT 159 (228)
T COG0274 81 AEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEK-RKACEIAIEAGADFVKT 159 (228)
T ss_pred HHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHH-HHHHHHHHHhCCCEEEc
Confidence 34566778999999888888865 466778888888887765 2268888877888888 77788999999999999
Q ss_pred ccccccCCcCcccHHHHHHHHHhcc
Q 007056 310 TINGIGERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 310 Ti~GlGERaGNa~lEevv~~L~~~~ 334 (620)
|-+.- .|++.+|++..+.+.-|
T Consensus 160 STGf~---~~gAT~edv~lM~~~vg 181 (228)
T COG0274 160 STGFS---AGGATVEDVKLMKETVG 181 (228)
T ss_pred CCCCC---CCCCCHHHHHHHHHHhc
Confidence 87543 79999999888777655
No 197
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=89.61 E-value=30 Score=36.38 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHHH-HHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~e-~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+..+.-.++++.|.+.||+-|=+ | ++.-+.+|+. .++...+... +-+|.|++.+.+..+-++.+ +
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-------~~~pvi~gv~~~t~~~i~~a-~ 88 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-------GRVPVLAGAGYGTATAIAYA-Q 88 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCCEEEecCCCHHHHHHHH-H
Confidence 378888899999999999998865 3 3555666654 4455555432 23467777764333333433 3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
....+|++.+-+.-|.. +..+.+++++-..+.++. .++.-+.|+. .....+++.+.+++ +.-...
T Consensus 89 ~a~~~Gad~v~~~pP~y-------~~~~~~~i~~~f~~v~~~---~~~pi~lYn~-~g~~l~~~~l~~L~----~~~pni 153 (289)
T cd00951 89 AAEKAGADGILLLPPYL-------TEAPQEGLYAHVEAVCKS---TDLGVIVYNR-ANAVLTADSLARLA----ERCPNL 153 (289)
T ss_pred HHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEeC-CCCCCCHHHHHHHH----hcCCCE
Confidence 34567999886655432 234666666655555443 3455456663 23345666655554 322478
Q ss_pred EeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEE-ecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHH
Q 007056 248 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST-HCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEV 326 (620)
Q Consensus 248 I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~-H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEev 326 (620)
+.+.||.| ....+.++++. .++ + +.+ .+|. ..-...+.++.+|++.. +.| .+|.-.|.+
T Consensus 154 vgiKds~~--d~~~~~~~~~~----~~~--~--~~v~~G~~---~~d~~~~~~l~~Ga~G~---is~----~~n~~P~~~ 213 (289)
T cd00951 154 VGFKDGVG--DIELMRRIVAK----LGD--R--LLYLGGLP---TAEVFALAYLAMGVPTY---SSA----VFNFVPEIA 213 (289)
T ss_pred EEEEeCCC--CHHHHHHHHHh----cCC--C--eEEEeCCC---cchHhHHHHHHCCCCEE---Eec----hhhhhHHHH
Confidence 99999987 44555555433 332 1 222 2221 01223556788897764 333 457777776
Q ss_pred HHHHHh
Q 007056 327 VMAFKC 332 (620)
Q Consensus 327 v~~L~~ 332 (620)
+...+.
T Consensus 214 ~~l~~~ 219 (289)
T cd00951 214 LAFYAA 219 (289)
T ss_pred HHHHHH
Confidence 665554
No 198
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=89.49 E-value=6.1 Score=42.15 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC---C---------C
Q 007056 159 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED---A---------G 226 (620)
Q Consensus 159 ~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed---~---------~ 226 (620)
.+++..+++.++.+|+.....|+---+ +.|.+|.++.+.+.++++..++ ..|.+++-. + +
T Consensus 154 ~~~~~~ai~~~~~~Gi~v~~~~i~G~P-------~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G 225 (313)
T TIGR01210 154 FEDFIRAAELARKYGAGVKAYLLFKPP-------FLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRG 225 (313)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCC-------CCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcC
Confidence 456667788888888874333332111 3466678888888999998887 666664431 1 1
Q ss_pred CCCHH---HHHHHHHHHHHcCCcEEeecCCccccC
Q 007056 227 RSDRK---FLYEILGEVIKVGATTLNIPDTVGITM 258 (620)
Q Consensus 227 r~d~e---~l~~~~~~~~~aGa~~I~L~DTvG~~~ 258 (620)
...+. -+.++++.+.+.++ ..++||+|...
T Consensus 226 ~~~pp~lws~~e~l~e~~~~~~--~~~~d~~g~~~ 258 (313)
T TIGR01210 226 LYRPPWLWSVAEVLKEAKKIGA--EVLSDPVGAGS 258 (313)
T ss_pred CCCCCCHHHHHHHHHHHHhhCC--eEEecCCCCCC
Confidence 12222 34455555554454 67789988773
No 199
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=89.46 E-value=6.6 Score=41.96 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=77.4
Q ss_pred CCCcccCCCCC----CCCCHHHHHHHHHHHhHcCCCEEEE-----ecCCCChhHHHHHHHHHHHhcccccccCCccceEE
Q 007056 82 TTLRDGEQSPG----ATLTSKEKLDIARQLAKLGVDIIEA-----GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC 152 (620)
Q Consensus 82 tTLRDG~Qs~g----~~fs~~~Kl~Ia~~L~~~Gvd~IEv-----GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~ 152 (620)
|+.=.|..|.- .....|.-++.++...+.-=+-+|+ |-|..-|--.+.++.+++.-+.. .+ .+.
T Consensus 124 CSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~------vV-SmQ 196 (414)
T COG2100 124 CSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVE------VV-SMQ 196 (414)
T ss_pred EeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCce------EE-EEe
Confidence 34456666542 2345777888888888887778887 44666665567777766542211 11 122
Q ss_pred eecc-cchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHH
Q 007056 153 GLSR-CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 231 (620)
Q Consensus 153 ~~~r-~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e 231 (620)
.-+- .+ +..++.|.++|.+||++.+.+-|--..+.|-=-.+..++.+.++++++.+.|++ |-..|.--.-.+.+
T Consensus 197 Tng~~L~----~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~id-vlIaPv~lPG~ND~ 271 (414)
T COG2100 197 TNGVLLS----KKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGID-VLIAPVWLPGVNDD 271 (414)
T ss_pred eCceecc----HHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCC-EEEeeeecCCcChH
Confidence 1111 12 233455667899999998766554433333222233344444444444444443 33333322223333
Q ss_pred HHHHHHHHHHHcC
Q 007056 232 FLYEILGEVIKVG 244 (620)
Q Consensus 232 ~l~~~~~~~~~aG 244 (620)
.+.++++-+.+.|
T Consensus 272 E~~~iIe~A~~iG 284 (414)
T COG2100 272 EMPKIIEWAREIG 284 (414)
T ss_pred HHHHHHHHHHHhC
Confidence 3334444444433
No 200
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=89.45 E-value=31 Score=36.49 Aligned_cols=192 Identities=18% Similarity=0.216 Sum_probs=120.6
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH--HHHHHHHHHHhcccccccCCccceEEeeccc
Q 007056 85 RDGEQSPGA--TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC 157 (620)
Q Consensus 85 RDG~Qs~g~--~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 157 (620)
|.+.++-+. .++.+.-..+++.-.+.+.+.|=--+|... +.+ ...++.+++.. -+|...=|--+
T Consensus 14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~---------~VPValHLDH~ 84 (284)
T PRK12737 14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKY---------NIPLALHLDHH 84 (284)
T ss_pred HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCC
Confidence 344444432 567899999999999999997755455332 112 13344455432 13443333333
Q ss_pred c-hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC-----
Q 007056 158 N-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA----- 225 (620)
Q Consensus 158 ~-~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~----- 225 (620)
. .+.|.+|+++ |...|.+ .. | ..+.+|+++..++++++|+..|+. |+- +.||.
T Consensus 85 ~~~e~i~~ai~~----GftSVMi-Dg-S--------~lp~eeNi~~T~~vv~~Ah~~gvs-VEaElG~igg~e~~~~~~~ 149 (284)
T PRK12737 85 EDLDDIKKKVRA----GIRSVMI-DG-S--------HLSFEENIAIVKEVVEFCHRYDAS-VEAELGRLGGQEDDLVVDE 149 (284)
T ss_pred CCHHHHHHHHHc----CCCeEEe-cC-C--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeeccCccCCccccc
Confidence 2 4556666554 8887754 32 2 247899999999999999999974 432 22332
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCcEEeec--CCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHH
Q 007056 226 ---GRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 298 (620)
Q Consensus 226 ---~r~d~e~l~~~~~~~~~aGa~~I~L~--DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 298 (620)
..|+|+...++++. -|+|.+-++ -.=|.- .|.==.++++.|++.+ ++||.+|+ ..|+.--.-..
T Consensus 150 ~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~----~iPLVlHG--gSG~~~e~~~k 220 (284)
T PRK12737 150 KDAMYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV----SIPLVLHG--ASGVPDEDVKK 220 (284)
T ss_pred ccccCCCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh----CCCEEEeC--CCCCCHHHHHH
Confidence 26788888777764 588865544 122221 3543446788888876 36787665 55666778888
Q ss_pred HHHhcCcEEee
Q 007056 299 GACAGARQVEV 309 (620)
Q Consensus 299 Av~aGA~~Vd~ 309 (620)
|++.|+.-|+.
T Consensus 221 ai~~Gi~KiNi 231 (284)
T PRK12737 221 AISLGICKVNV 231 (284)
T ss_pred HHHCCCeEEEe
Confidence 99999887743
No 201
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=89.43 E-value=7.5 Score=41.23 Aligned_cols=205 Identities=15% Similarity=0.123 Sum_probs=117.6
Q ss_pred HHHHhHcCCCEEEE-ec---------CCCC----hhHHHHHHHHHHHhcccccccCCccceEE----eecccchhhHHHH
Q 007056 104 ARQLAKLGVDIIEA-GF---------PAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 165 (620)
Q Consensus 104 a~~L~~~Gvd~IEv-Gf---------P~~s----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 165 (620)
++.+.++|++.|=. |+ |-.. .+..+.+++|++... .|.+. ||+. ...+.+.
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~---------lPv~aD~dtGyG~--~~~v~r~ 97 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVD---------VPVIMDADAGYGN--AMSVWRA 97 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCCC--cHHHHHH
Confidence 56677889998876 33 2211 112455666665431 13222 2332 2235566
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVI 241 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~ 241 (620)
++.+..+|+..|+|-..+++-++-+.-+ .+.++..++++.+++...+ .+.+..-=-|+ .....+..++-+++..
T Consensus 98 V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~--~d~~I~ARTDa~~~~g~deaI~Ra~aY~ 175 (294)
T TIGR02319 98 TREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARED--EDFTIIARTDARESFGLDEAIRRSREYV 175 (294)
T ss_pred HHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccC--CCeEEEEEecccccCCHHHHHHHHHHHH
Confidence 6777778999999988776533322112 3778888888776654443 22121110122 1235677888889999
Q ss_pred HcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcc
Q 007056 242 KVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNA 321 (620)
Q Consensus 242 ~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa 321 (620)
++|||.|.++ |..+++++.++.+.+. .| +.+-+-......+= +.-..-+.|++.|-..... -|+-..
T Consensus 176 eAGAD~ifi~---~~~~~~ei~~~~~~~~--~P----~~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~--~~aa~~ 242 (294)
T TIGR02319 176 AAGADCIFLE---AMLDVEEMKRVRDEID--AP----LLANMVEGGKTPWL--TTKELESIGYNLAIYPLSG--WMAAAS 242 (294)
T ss_pred HhCCCEEEec---CCCCHHHHHHHHHhcC--CC----eeEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHH--HHHHHH
Confidence 9999999996 6788888777776542 12 22233333222211 2334445598888444333 255666
Q ss_pred cHHHHHHHHHhcc
Q 007056 322 SLEEVVMAFKCRG 334 (620)
Q Consensus 322 ~lEevv~~L~~~~ 334 (620)
.+.+.+..|...|
T Consensus 243 a~~~~~~~l~~~G 255 (294)
T TIGR02319 243 VLRKLFTELREAG 255 (294)
T ss_pred HHHHHHHHHHHcC
Confidence 7777777676544
No 202
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=89.40 E-value=8.2 Score=39.27 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=84.5
Q ss_pred HHHHHHHhHcCCCEEEEecCCCCh------------hHH-HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 101 LDIARQLAKLGVDIIEAGFPAASK------------EDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGfP~~s~------------~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
-.+++.|.+.+||..-.-|-+.+. +|+ ..++.|++. +-.+.. -.+.|+.-.....=..|++
T Consensus 100 E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~-~irvvp-----HitiGL~~gki~~e~kaId 173 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKEN-GIRVVP-----HITIGLDFGKIHGEFKAID 173 (275)
T ss_pred HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHc-Cceece-----eEEEEeccCcccchHHHHH
Confidence 567888888899988887754332 121 223333332 111111 1345655444444456777
Q ss_pred HHhcCCCC--EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCC
Q 007056 168 AVKYAKRP--RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 168 al~~ag~~--~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa 245 (620)
.|.+...+ .+.+++|+--. +++.++.--.+.+.++++|||+.--..|..+|+ |---++-.++=+.++.+|+
T Consensus 174 iL~~~~~DalVl~vliPtpGt----km~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCm---rP~Ge~rvk~d~~av~~gV 246 (275)
T COG1856 174 ILVNYEPDALVLVVLIPTPGT----KMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCM---RPRGEWRVKLDKEAVLAGV 246 (275)
T ss_pred HHhcCCCCeEEEEEEecCCch----hccCCCCcCHHHHHHHHHHHHHhCCCCeeEeec---CcCchhHHHHHHHHHHcCC
Confidence 77655555 45667887654 445555555566778999999983323777775 3333566677788999999
Q ss_pred cEEeec
Q 007056 246 TTLNIP 251 (620)
Q Consensus 246 ~~I~L~ 251 (620)
|+|..|
T Consensus 247 d~It~P 252 (275)
T COG1856 247 DRITFP 252 (275)
T ss_pred ceeecC
Confidence 999876
No 203
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=89.26 E-value=18 Score=39.05 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCChhHH-----HHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d~-----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
=+.++-+++|+.|.++|.+.+-.|. |..||..| +-++.+.+.... .|+ +.++- -....+++...+
T Consensus 104 Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~-----~Gl-~v~te--v~d~~~~~~l~~ 175 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE-----TGL-PIVTE--VMDPRDVELVAE 175 (335)
T ss_pred CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH-----cCC-cEEEe--eCCHHHHHHHHH
Confidence 4889999999999999999776653 77776543 233333332111 133 12221 124455554433
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
. ++.+.| ++.+.. + .+.++++-..|.. |.++- +.-.+++.+...++.+...|-..
T Consensus 176 ~-----vd~lqI--gAr~~~-----------N----~~LL~~va~~~kP-ViLk~--G~~~ti~E~l~A~e~i~~~GN~~ 230 (335)
T PRK08673 176 Y-----VDILQI--GARNMQ-----------N----FDLLKEVGKTNKP-VLLKR--GMSATIEEWLMAAEYILAEGNPN 230 (335)
T ss_pred h-----CCeEEE--Cccccc-----------C----HHHHHHHHcCCCc-EEEeC--CCCCCHHHHHHHHHHHHHcCCCe
Confidence 2 455544 332211 1 2345555567775 77743 22346777777888888889988
Q ss_pred EeecCC--ccc--cCHHHHH-HHHHHHHHhCCCCCceeE-E--EecCCCcchHHHHHHHHHHhcCc--EEeeccc
Q 007056 248 LNIPDT--VGI--TMPTEFG-KLIADIKANTPGIENVVI-S--THCQNDLGLSTANTIAGACAGAR--QVEVTIN 312 (620)
Q Consensus 248 I~L~DT--vG~--~~P~~v~-~li~~l~~~~~~~~~v~i-~--~H~HND~GlAvANslaAv~aGA~--~Vd~Ti~ 312 (620)
+.||.- .-+ .+++.+- ..+..+++.+. .|| . -|.=...-+-..-+++|+.+||+ .|+.-..
T Consensus 231 viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~----lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 231 VILCERGIRTFETATRNTLDLSAVPVIKKLTH----LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred EEEEECCCCCCCCcChhhhhHHHHHHHHHhcC----CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 888873 122 2233322 34566676543 344 3 24423333445779999999999 6765554
No 204
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=89.25 E-value=8.7 Score=41.62 Aligned_cols=147 Identities=16% Similarity=0.073 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHhHcC---CCEEEEe--cCCC-ChhHHH-HHHHHHHHhcccccccCCccceEEeecccchhhHH-HHH
Q 007056 95 LTSKEKLDIARQLAKLG---VDIIEAG--FPAA-SKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAW 166 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~G---vd~IEvG--fP~~-s~~d~e-~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~ 166 (620)
+......+|...+..+| |+.|=+| -|.. ++.+.+ .++.|.+..... . + ..+..-+ ++..+. ..+
T Consensus 32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~--~--~--~eitie~--np~~lt~e~l 103 (360)
T TIGR00539 32 YTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQHASLS--D--D--CEITTEA--NPELITAEWC 103 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCC--C--C--CEEEEEe--CCCCCCHHHH
Confidence 45555666666565566 6766664 5753 345543 344443332111 1 1 2333323 333342 235
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCC
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa 245 (620)
+.++.+|+.+|.+-+=+.+-.....+|+. ...+.+.++++.+++.|+..|..+...+ ...+.+.+.+.++.+.+.|+
T Consensus 104 ~~l~~~Gv~risiGvqS~~~~~l~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 104 KGLKGAGINRLSLGVQSFRDDKLLFLGRQ--HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPI 181 (360)
T ss_pred HHHHHcCCCEEEEecccCChHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCC
Confidence 67788899999987665554555566653 2355677889999999986455544333 24567888899999999999
Q ss_pred cEEeec
Q 007056 246 TTLNIP 251 (620)
Q Consensus 246 ~~I~L~ 251 (620)
+.|.+-
T Consensus 182 ~~is~y 187 (360)
T TIGR00539 182 NHLSAY 187 (360)
T ss_pred CEEEee
Confidence 888753
No 205
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=89.25 E-value=8.8 Score=40.32 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
..|+.++..++++.+.+.|++.|-. |=|-..++=.+.++.+.+. ++ ..+...+ +---++..++.++
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~---------g~-~~v~i~T--NG~ll~~~~~~l~ 105 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDY---------GI-KDVSMTT--NGILLEKLAKKLK 105 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhC---------CC-ceEEEEc--CchHHHHHHHHHH
Confidence 3589999999999999999998766 4465555433455554432 11 1222222 1111233345566
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCC-CCHHHHHHHHHHHHHcCCc
Q 007056 171 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r-~d~e~l~~~~~~~~~aGa~ 246 (620)
.+|.+.|.+.+-+.+-.....+.. ...++.+.+.++.+++.|+..|.++.. ..+ .+.+.+.++++.+.+.|++
T Consensus 106 ~~g~~~v~iSld~~~~~~~~~i~~--~~~~~~vl~~i~~~~~~G~~~v~i~~v-~~~g~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 106 EAGLDRVNVSLDTLDPEKYKKITG--RGALDRVIEGIESAVDAGLTPVKLNMV-VLKGINDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred HCCCCEEEEEecCCCHHHhhhccC--CCcHHHHHHHHHHHHHcCCCcEEEEEE-EeCCCCHHHHHHHHHHHHhcCCE
Confidence 778888888665533222222222 234566667777777777532333221 112 3445566666666666654
No 206
>PRK09234 fbiC FO synthase; Reviewed
Probab=89.22 E-value=29 Score=42.12 Aligned_cols=223 Identities=20% Similarity=0.091 Sum_probs=127.1
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEE--ec-CCCC-------------hhHHHHHHHHHHHhcccccccCCccceEEee
Q 007056 91 PGATLTSKEKLDIARQLAKLGVDIIEA--GF-PAAS-------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGL 154 (620)
Q Consensus 91 ~g~~fs~~~Kl~Ia~~L~~~Gvd~IEv--Gf-P~~s-------------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 154 (620)
....|+.++.+++++...+.|+..+=+ |- |... ..+++.+..+.+.+... .++.|.+..
T Consensus 98 ~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~----~gl~p~i~~- 172 (843)
T PRK09234 98 EAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE----TGLLPHLNP- 172 (843)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh----cCCCceeee-
Confidence 456799999999999999999998644 32 4211 11356666665544321 133333322
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecC-CHHHH-H----HHh--CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIAT-SGIHM-E----HKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG 226 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~-Sd~h~-~----~~l--~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~ 226 (620)
+-...++++ .|+.+++. .++..-+ ++.+- + +.. +|..++ . .++++.|++.|+. ++-+...+-
T Consensus 173 G~ls~~E~~----~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~---R-L~ti~~A~~lGi~-~tsG~L~Gi 242 (843)
T PRK09234 173 GVMSWSELA----RLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAV---R-LRVLEDAGRLSVP-FTTGILIGI 242 (843)
T ss_pred CCCCHHHHH----HHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHH---H-HHHHHHHHHcCCC-ccceEEEEC
Confidence 223344443 33444543 2333322 33221 1 111 233443 2 5789999999986 332222222
Q ss_pred CCCHHHHHHHHHHHHHc-----CCcEEe------ecCCc----cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcch
Q 007056 227 RSDRKFLYEILGEVIKV-----GATTLN------IPDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL 291 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~a-----Ga~~I~------L~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl 291 (620)
--+++...+.+..+.+. |...|. .++|- ...+|+++-+.|+..|--+|+..++... -|-.|.
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~~~Iqa~---~~l~g~ 319 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPKMRIQAP---PNLVSG 319 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceeeCc---cccCCH
Confidence 33445555555555555 443322 23552 3578999999999988878653333332 355565
Q ss_pred HHHHHHHHHHhcCcEEeec--ccc--c-cCCcCcccHHHHHHHHHhcc
Q 007056 292 STANTIAGACAGARQVEVT--ING--I-GERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 292 AvANslaAv~aGA~~Vd~T--i~G--l-GERaGNa~lEevv~~L~~~~ 334 (620)
. -+..++.+||+-+.+| +.| + -|+. ..+++++...++..|
T Consensus 320 ~--~~~~~L~~GanD~GG~~~~~~d~~~p~~~-~~~~~~l~~~~~~aG 364 (843)
T PRK09234 320 D--ECAALLGAGIDDWGGVSPLTPDHVNPERP-WPQLDELAAVTAEAG 364 (843)
T ss_pred H--HHHHHHhcCCCcccchhhhHhhccCccCC-CCCHHHHHHHHHHcC
Confidence 4 3457899999999998 444 1 1343 457899998888765
No 207
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.08 E-value=24 Score=34.69 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 175 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~ 175 (620)
+.++-+++++.+.+.|++.||+-+- ++...+.++.+.+..+ .+ .+-+-+-...++++.|+++ |.+
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k--~~~~~e~~~~~~~~~~-~~--------~~g~gtvl~~d~~~~A~~~----gAd 86 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWN--SDQPAELISQLREKLP-EC--------IIGTGTILTLEDLEEAIAA----GAQ 86 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhCC-Cc--------EEeEEEEEcHHHHHHHHHc----CCC
Confidence 7889999999999999999999764 3344566665554321 10 0111111234677777765 888
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc
Q 007056 176 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 255 (620)
Q Consensus 176 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG 255 (620)
-||+.- .+ .+.++.++.++.. ...+ -.++..+ ..+.+.|+|.|.+=-|-=
T Consensus 87 gv~~p~--~~------------------~~~~~~~~~~~~~-~i~G-----~~t~~e~----~~A~~~Gadyv~~Fpt~~ 136 (187)
T PRK07455 87 FCFTPH--VD------------------PELIEAAVAQDIP-IIPG-----ALTPTEI----VTAWQAGASCVKVFPVQA 136 (187)
T ss_pred EEECCC--CC------------------HHHHHHHHHcCCC-EEcC-----cCCHHHH----HHHHHCCCCEEEECcCCc
Confidence 876421 11 1334566667654 2223 2444443 344568999888733311
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 256 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 256 ~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
..- -+.++.++..+|..+=+++ -|.-..|.-.-+++||+.|
T Consensus 137 ~~G----~~~l~~~~~~~~~ipvvai-------GGI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 137 VGG----ADYIKSLQGPLGHIPLIPT-------GGVTLENAQAFIQAGAIAV 177 (187)
T ss_pred ccC----HHHHHHHHhhCCCCcEEEe-------CCCCHHHHHHHHHCCCeEE
Confidence 111 3456777776664433444 4677789999999999876
No 208
>PRK13753 dihydropteroate synthase; Provisional
Probab=88.93 E-value=30 Score=36.47 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecCC
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFPA 121 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~ 121 (620)
|..++.+.-++=+..+.+.|.|+|++|..+
T Consensus 19 g~~~~~d~a~~~a~~m~~~GAdIIDIGgeS 48 (279)
T PRK13753 19 SRRLDPAGAVTAAIEMLRVGSDVVDVGPAA 48 (279)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 344789999999999999999999999743
No 209
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=88.89 E-value=2.9 Score=43.99 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=78.9
Q ss_pred EcCCC-CCCCCHHHHHHHHHHHHHcCCcEEeecCCccc---cCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHH
Q 007056 220 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 295 (620)
Q Consensus 220 f~~ed-~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 295 (620)
..|-+ .++.|.+-+.++++.+++.|++.|.++-|+|= ++.+|-.++++.+.+...+ +++|-+|.-.+..-++.-
T Consensus 9 vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~--~~pvi~gv~~~t~~~i~~ 86 (289)
T cd00951 9 VTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG--RVPVLAGAGYGTATAIAY 86 (289)
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCCEEEecCCCHHHHHHH
Confidence 34543 35899999999999999999999999999884 5788888899988887765 355555554467778888
Q ss_pred HHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 296 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
+..|-++||+.+=.. ...--. .+-++++..++.
T Consensus 87 a~~a~~~Gad~v~~~-pP~y~~---~~~~~i~~~f~~ 119 (289)
T cd00951 87 AQAAEKAGADGILLL-PPYLTE---APQEGLYAHVEA 119 (289)
T ss_pred HHHHHHhCCCEEEEC-CCCCCC---CCHHHHHHHHHH
Confidence 899999999998553 333222 345666655543
No 210
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=88.86 E-value=23 Score=37.32 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHHHhHcC-CCEEEEe-----cCCCChhHHH-HHHHHHHHhcccccccCCccceEEeecccchhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLG-VDIIEAG-----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~G-vd~IEvG-----fP~~s~~d~e-~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 166 (620)
.+..+.-.++++.|.+.| ++-|=++ ++.-+.+|+. .++..++... +-+|.+++.+..+.++.-...
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-------~~~pvi~gv~~~~t~~~i~la 89 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-------DQIALIAQVGSVNLKEAVELG 89 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCCCCHHHHHHHH
Confidence 478888899999999999 9988664 4556667754 4455555432 234677887765555543333
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC--CCCCCHHHHHHHHHHHHHcC
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed--~~r~d~e~l~~~~~~~~~aG 244 (620)
+..+.+|++.|-+..|-. +..+.+++++-..+.++.+. ++.-+.|+... +...+++.+.+++ +.
T Consensus 90 ~~a~~~Gad~v~v~~P~y-------~~~~~~~i~~yf~~v~~~~~--~lpv~lYn~P~~tg~~l~~~~i~~L~----~~- 155 (290)
T TIGR00683 90 KYATELGYDCLSAVTPFY-------YKFSFPEIKHYYDTIIAETG--GLNMIVYSIPFLTGVNMGIEQFGELY----KN- 155 (290)
T ss_pred HHHHHhCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHhhCC--CCCEEEEeCccccccCcCHHHHHHHh----cC-
Confidence 444667999887755532 34566777666665554322 23435665543 2344556555443 33
Q ss_pred CcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHH
Q 007056 245 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 324 (620)
Q Consensus 245 a~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lE 324 (620)
...+.+.|+.|- +..+.+++ +..++ ..| +=+++ ...+.++.+|++.. +.| .+|.--+
T Consensus 156 pnv~giK~s~~d--~~~~~~~~----~~~~~---~~v-~~G~d------~~~~~~l~~G~~G~---i~~----~~n~~P~ 212 (290)
T TIGR00683 156 PKVLGVKFTAGD--FYLLERLK----KAYPN---HLI-WAGFD------EMMLPAASLGVDGA---IGS----TFNVNGV 212 (290)
T ss_pred CCEEEEEeCCCC--HHHHHHHH----HhCCC---CEE-EECch------HHHHHHHHCCCCEE---Eec----HHHhCHH
Confidence 589999999873 55555543 33443 222 11232 23456677787654 333 5676666
Q ss_pred HHHHHHHh
Q 007056 325 EVVMAFKC 332 (620)
Q Consensus 325 evv~~L~~ 332 (620)
.++...+.
T Consensus 213 ~~~~i~~~ 220 (290)
T TIGR00683 213 RARQIFEL 220 (290)
T ss_pred HHHHHHHH
Confidence 66554443
No 211
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.86 E-value=13 Score=37.64 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=92.1
Q ss_pred HHHHHHHHHhHcCCCEEEEecCC----CChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 99 EKLDIARQLAKLGVDIIEAGFPA----ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 99 ~Kl~Ia~~L~~~Gvd~IEvGfP~----~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
+=+++++.+.+.|++.+.+=--. .....++.++.+++.... |.+.+=+-...+|++.+++ +|+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~---------~l~v~GGi~~~~~~~~~~~----~Ga 99 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGV---------PVQLGGGIRSAEDAASLLD----LGV 99 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCC---------cEEEcCCcCCHHHHHHHHH----cCC
Confidence 45778888899999988764322 223457788888875321 2222222224567777665 488
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE--EcCC------CCCCCCH-HHHHHHHHHHHHcCC
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--FSPE------DAGRSDR-KFLYEILGEVIKVGA 245 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~--f~~e------d~~r~d~-e~l~~~~~~~~~aGa 245 (620)
+.|++-.... .+ .+.+.++++. .|.+.+. .+.- .+...+. ....++++.+.+.|+
T Consensus 100 ~~v~iGs~~~---------~~----~~~~~~i~~~---~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 100 DRVILGTAAV---------EN----PEIVRELSEE---FGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred CEEEEChHHh---------hC----hHHHHHHHHH---hCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCC
Confidence 8887632210 01 1222333332 3322222 2210 1111111 134567777788999
Q ss_pred cEEeecCC--ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchH-HHHHHHHHHhcCcEE
Q 007056 246 TTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAGARQV 307 (620)
Q Consensus 246 ~~I~L~DT--vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv~aGA~~V 307 (620)
+.|.+-|+ .|...+. -.++++.+++.++ +|+-.-. |.. ..+.....+.||+.|
T Consensus 164 ~~i~~~~~~~~g~~~g~-~~~~i~~i~~~~~----iPvia~G----GI~~~~di~~~~~~Ga~gv 219 (241)
T PRK13585 164 GSILFTNVDVEGLLEGV-NTEPVKELVDSVD----IPVIASG----GVTTLDDLRALKEAGAAGV 219 (241)
T ss_pred CEEEEEeecCCCCcCCC-CHHHHHHHHHhCC----CCEEEeC----CCCCHHHHHHHHHcCCCEE
Confidence 99998766 5555543 2346777777653 3444333 222 345555677888875
No 212
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.81 E-value=2.8 Score=43.98 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=82.3
Q ss_pred EcCC-CCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHH
Q 007056 220 FSPE-DAGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTA 294 (620)
Q Consensus 220 f~~e-d~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvA 294 (620)
+.|- +.+..|.+-+.+.++.+.+.|++.|.++-|+| .++++|-.++++.+.+..++ +++|-+|. +++.--++.
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~~~~~~i~ 87 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG--RVPVIAGTGSNSTAEAIE 87 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC--CCcEEeecCCchHHHHHH
Confidence 3444 24578999999999999999999999999998 56899999999999988765 45666665 678899999
Q ss_pred HHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 295 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
-+..|-++||+.|=..---+.. .+-++++..+.
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~----~~~~~i~~~~~ 120 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNK----PTQEGLYQHFK 120 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCC----CCHHHHHHHHH
Confidence 9999999999998776544332 23355555443
No 213
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=88.75 E-value=40 Score=36.69 Aligned_cols=192 Identities=18% Similarity=0.189 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh---hH--HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK---ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~---~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+.+-+.|=-.+|.... .+ ...++.+++... -+|...=|--+ ..+.|.+|++
T Consensus 25 ~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~--------~VPVaLHLDHg~~~e~i~~Ai~ 96 (347)
T PRK13399 25 VNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP--------DIPICLHQDHGNSPATCQSAIR 96 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC--------CCcEEEECCCCCCHHHHHHHHh
Confidence 5788999999999999999987655654321 11 133444444210 12433333333 3445555555
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE--E----cCC-------C----------
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--F----SPE-------D---------- 224 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~--f----~~e-------d---------- 224 (620)
+ |...|.+=.|.-+ .-+...+.+|+++..++.|++|+..|+. |+ . +.| |
T Consensus 97 ~----GFtSVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~Gvs-VEaELG~igg~e~~~~g~ed~~~~~~~~~~ 168 (347)
T PRK13399 97 S----GFTSVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVS-VEGELGCLGSLETGEAGEEDGVGAEGKLSH 168 (347)
T ss_pred c----CCCEEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeccCcccccccccCCccccccccc
Confidence 4 8888755333111 0112335899999999999999999974 43 2 111 2
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCcEEeec--CCcccc----CHH---HHHHHHHHHHHhCCCCCceeEEEecCCCcc----
Q 007056 225 -AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MPT---EFGKLIADIKANTPGIENVVISTHCQNDLG---- 290 (620)
Q Consensus 225 -~~r~d~e~l~~~~~~~~~aGa~~I~L~--DTvG~~----~P~---~v~~li~~l~~~~~~~~~v~i~~H~HND~G---- 290 (620)
...|+|+...+++++ -|+|.+-++ -.=|.. .|. ==.++++.|++.++ ++||.+|.=...+
T Consensus 169 ~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~---~vPLVLHGgSGvp~~~~ 242 (347)
T PRK13399 169 DQMLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP---NTHLVMHGSSSVPQELQ 242 (347)
T ss_pred cccCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC---CCCEEEeCCCCCCHHHH
Confidence 236788887777764 587754443 223332 232 22457788888885 3789999765433
Q ss_pred ---------------hHHHHHHHHHHhcCcEE
Q 007056 291 ---------------LSTANTIAGACAGARQV 307 (620)
Q Consensus 291 ---------------lAvANslaAv~aGA~~V 307 (620)
...-+-..|+..|+.-|
T Consensus 243 ~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KI 274 (347)
T PRK13399 243 EIINAYGGKMKETYGVPVEEIQRGIKHGVRKV 274 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCeEE
Confidence 34556666666666666
No 214
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=88.70 E-value=5.9 Score=41.45 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Q 007056 162 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVI 241 (620)
Q Consensus 162 I~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~ 241 (620)
+++-++.+...|++.+-+..++++.+ .+|.+|-.+.+..+++.++.. + .|..+. +..+.+..++.++.+.
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~~~~~~-~-~vi~gv---~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVEAAAGR-V-PVIAGV---GANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHHHHTTS-S-EEEEEE---ESSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHccCc-e-EEEecC---cchhHHHHHHHHHHHh
Confidence 34445556667888888877877755 367788777777767666532 2 244432 2456678888888888
Q ss_pred HcCCcEEe-ecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEe
Q 007056 242 KVGATTLN-IPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 284 (620)
Q Consensus 242 ~aGa~~I~-L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H 284 (620)
++|+|.+. ++=-....+++++.+.++.+.+..+ ++|-++
T Consensus 94 ~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~----~pi~iY 133 (289)
T PF00701_consen 94 DAGADAVLVIPPYYFKPSQEELIDYFRAIADATD----LPIIIY 133 (289)
T ss_dssp HTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS----SEEEEE
T ss_pred hcCceEEEEeccccccchhhHHHHHHHHHHhhcC----CCEEEE
Confidence 88888653 4444556778888888888886642 455544
No 215
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=88.69 E-value=38 Score=38.12 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHH-----hHcC----CCEEEEecCCCChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhHHH
Q 007056 95 LTSKEKLDIARQL-----AKLG----VDIIEAGFPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 164 (620)
Q Consensus 95 fs~~~Kl~Ia~~L-----~~~G----vd~IEvGfP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 164 (620)
++.++-.+-++.+ .+.| .|.|-+|++...|+.+ +.++.+.+.. ++ | ++ +.-.+.+-+++
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~--------dv-P-LS-IDT~dpevlea 170 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETT--------DL-P-LI-LCSEDPAVLKA 170 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhc--------CC-C-EE-EeCCCHHHHHH
Confidence 5656666666666 5566 9999999987666543 4455555432 11 2 22 22246677777
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG 244 (620)
++++ +.+...+..+.+. ++..++++.++++|+. +...+.+ .+++.++++.+.++|
T Consensus 171 Alea----gad~~plI~Sat~---------------dN~~~m~~la~~yg~p-vVv~~~d-----l~~L~~lv~~~~~~G 225 (450)
T PRK04165 171 ALEV----VADRKPLLYAATK---------------ENYEEMAELAKEYNCP-LVVKAPN-----LEELKELVEKLQAAG 225 (450)
T ss_pred HHHh----cCCCCceEEecCc---------------chHHHHHHHHHHcCCc-EEEEchh-----HHHHHHHHHHHHHcC
Confidence 7776 5555555555431 2344566777888886 5555533 889999999999999
Q ss_pred CcEEee
Q 007056 245 ATTLNI 250 (620)
Q Consensus 245 a~~I~L 250 (620)
...|.|
T Consensus 226 I~dIIL 231 (450)
T PRK04165 226 IKDLVL 231 (450)
T ss_pred CCcEEE
Confidence 976665
No 216
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=88.69 E-value=8.7 Score=41.47 Aligned_cols=132 Identities=12% Similarity=0.062 Sum_probs=83.6
Q ss_pred HHHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC--EEEEcCCCCC-----C
Q 007056 166 WEAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD--DVEFSPEDAG-----R 227 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~--~V~f~~ed~~-----r 227 (620)
.+..+.+|.+.|.+-.+- |+ -++...+|=|.+.-.+.+.+.++.+|+. |.+ .|.++++|.. -
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~ 237 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS 237 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence 334566899998876553 22 2444456667777777777777777764 432 2455765421 2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecC--CccccCHHHHHHHHHHHHHhCCCCCceeE-EEecCCCcchHHHHHHHHHHhc-
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANTPGIENVVI-STHCQNDLGLSTANTIAGACAG- 303 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~D--TvG~~~P~~v~~li~~l~~~~~~~~~v~i-~~H~HND~GlAvANslaAv~aG- 303 (620)
.+.+...++++.+.+.|+|.|.+.. +... .+....++.+.+++.++ +|| .....+ ...+..+++.|
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~----ipvi~~G~i~-----~~~a~~~l~~g~ 307 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFK----GPLIAAGGYD-----AESAEAALADGK 307 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcC----CCEEEECCCC-----HHHHHHHHHcCC
Confidence 3678888999999999999998832 2221 13345567777888763 333 333332 66777888876
Q ss_pred CcEE
Q 007056 304 ARQV 307 (620)
Q Consensus 304 A~~V 307 (620)
||.|
T Consensus 308 ~D~V 311 (338)
T cd02933 308 ADLV 311 (338)
T ss_pred CCEE
Confidence 7766
No 217
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=88.67 E-value=12 Score=42.04 Aligned_cols=131 Identities=16% Similarity=0.168 Sum_probs=77.9
Q ss_pred CCCEEEEe--cCCC-ChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhH-HHHHHHHhcCCCCEEEEEecCCH
Q 007056 111 GVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATSG 185 (620)
Q Consensus 111 Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~eal~~ag~~~v~i~~~~Sd 185 (620)
+|+.|-+| -|.. ++++. +.++.+.+..+.. . ...+..- +++..+ +..++.++.+|+.+|.+-+=+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~--~----~~eitie--~np~~l~~e~l~~lk~~G~~risiGvqS~~ 173 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFN--A----DAEISIE--IDPRYITKDVIDALRDEGFNRLSFGVQDFN 173 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCC--C----CCeEEEE--eccCcCCHHHHHHHHHcCCCEEEEcCCCCC
Confidence 67777775 3543 44443 3344444432110 0 1123222 233333 23456778889999988655554
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCCcEEeec
Q 007056 186 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 186 ~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
-.....+|+. ...+++.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.|++.|.+-
T Consensus 174 ~~~l~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y 238 (455)
T TIGR00538 174 KEVQQAVNRI--QPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVF 238 (455)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444566663 2346678899999999985343332211 24578888899999999999887654
No 218
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=88.55 E-value=39 Score=36.35 Aligned_cols=186 Identities=15% Similarity=0.179 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhH-H----HHHHHHHHHhcccccccCCccceEEeeccc-chhhHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-F----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKT 164 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d-~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~ 164 (620)
..+.+.-..+++.-.+++-+.|=-.+|... +.+ . ..++.+++...- -+|...=|--+ ..+.+.+
T Consensus 31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~-------~VPV~lHLDHg~~~e~i~~ 103 (321)
T PRK07084 31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGC-------PIPIVLHLDHGDSFELCKD 103 (321)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCCHHHHHH
Confidence 467899999999999999997755454321 111 1 222333332110 12433333322 3445555
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC------CCCCHHH
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKF 232 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~------~r~d~e~ 232 (620)
++++ |...|.+=.| ..+.+|+++..++.+++|+.+|.. |+- +.||. ..|+|+.
T Consensus 104 ai~~----GftSVMiD~S----------~lp~eeNI~~T~evv~~Ah~~Gvs-VEaElG~igg~ed~~~~~~~~~T~pee 168 (321)
T PRK07084 104 CIDS----GFSSVMIDGS----------HLPYEENVALTKKVVEYAHQFDVT-VEGELGVLAGVEDEVSAEHHTYTQPEE 168 (321)
T ss_pred HHHc----CCCEEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeecCccCCccCcccccCCHHH
Confidence 5554 8888754332 247899999999999999999974 531 22332 2678888
Q ss_pred HHHHHHHHHHcCCcEEeec--CCcccc-------CHHHHHHHHHHHHHhCCCCCceeEEEecCCCc--------------
Q 007056 233 LYEILGEVIKVGATTLNIP--DTVGIT-------MPTEFGKLIADIKANTPGIENVVISTHCQNDL-------------- 289 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~--DTvG~~-------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~-------------- 289 (620)
..++++. -|+|.+-++ -.=|.- .|.==-++++.|++.++ ++||.+|+=...
T Consensus 169 A~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~---~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 169 VEDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP---GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred HHHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC---CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 8777764 688865544 233332 24334568888888885 378999986632
Q ss_pred -----chHHHHHHHHHHhcCcEE
Q 007056 290 -----GLSTANTIAGACAGARQV 307 (620)
Q Consensus 290 -----GlAvANslaAv~aGA~~V 307 (620)
|...-+-..|+..|+.-|
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KI 265 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKI 265 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCcee
Confidence 666777777788777776
No 219
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=88.44 E-value=3.3 Score=43.67 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CcEEeecCCccc---cCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHHHHHHH
Q 007056 225 AGRSDRKFLYEILGEVIKVG-ATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAG 299 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~aG-a~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaA 299 (620)
.++.|.+-+.+.++.+++.| ++.|.++-|+|= ++++|-.++++.+.+...+ +++|-+|. |++.--++.-+..|
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD--QIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHH
Confidence 45899999999999999999 999999999874 6899999999999888765 57888885 88888999999999
Q ss_pred HHhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 300 ACAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 300 v~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
.++||+.|=..- ..--+ .+-++++..++.
T Consensus 93 ~~~Gad~v~v~~-P~y~~---~~~~~i~~yf~~ 121 (290)
T TIGR00683 93 TELGYDCLSAVT-PFYYK---FSFPEIKHYYDT 121 (290)
T ss_pred HHhCCCEEEEeC-CcCCC---CCHHHHHHHHHH
Confidence 999999987733 33222 234666665543
No 220
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=88.28 E-value=46 Score=38.24 Aligned_cols=177 Identities=17% Similarity=0.136 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHhHcC--CCEEEEec----CCCChhHH--HHHHHHHHHhcccc---------c-----ccCCccceEE
Q 007056 95 LTSKEKLDIARQLAKLG--VDIIEAGF----PAASKEDF--EAVRTIAKEVGNAV---------D-----AESGYVPVIC 152 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~G--vd~IEvGf----P~~s~~d~--e~v~~i~~~~~~~~---------~-----~~~~l~~~i~ 152 (620)
-+..|...=+++|..+| +|.||+-+ +.+-|.++ .+++.+.+.+.... . +... ...+.
T Consensus 115 dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a-~~~~v 193 (522)
T TIGR01211 115 DPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETS-KHRCV 193 (522)
T ss_pred CcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcc-cCCeE
Confidence 45677777788888888 77888853 44444442 45555554432100 0 0000 01223
Q ss_pred eecc-cchhhH-HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC-CCC
Q 007056 153 GLSR-CNERDI-KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSD 229 (620)
Q Consensus 153 ~~~r-~~~~dI-~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~-r~d 229 (620)
+++- ++++-+ +.-++.++.+|..+|.+=+=+.+-.+...+|+. ...+.+.++++.+|+.|+. |.+..+.+- ..+
T Consensus 194 gitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--ht~~~v~~Ai~~lr~~G~~-v~~~LM~GLPgqt 270 (522)
T TIGR01211 194 GLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRG--HTVRDVVEATRLLRDAGLK-VVYHIMPGLPGSS 270 (522)
T ss_pred EEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCe-EEEEeecCCCCCC
Confidence 3221 223323 233567778899999886655555555666653 3356677889999999985 666544332 345
Q ss_pred HHHHHHHHHHHHH---cCCcEEeecCCc-------------c---ccCHHHHHHHHHHHHHhCCC
Q 007056 230 RKFLYEILGEVIK---VGATTLNIPDTV-------------G---ITMPTEFGKLIADIKANTPG 275 (620)
Q Consensus 230 ~e~l~~~~~~~~~---aGa~~I~L~DTv-------------G---~~~P~~v~~li~~l~~~~~~ 275 (620)
++...+.++.+.+ .++|.|.|--+. | ..++++..+++..+.+.+|.
T Consensus 271 ~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 271 FERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred HHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 6777788888774 788887776532 2 23567788888888888874
No 221
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.24 E-value=39 Score=35.96 Aligned_cols=196 Identities=18% Similarity=0.098 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHHH-HHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~e-~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+..+.-.++++.|.+.||+-|=+ | |+.-+.+|+. .++...+... +-+|.|++.+....++.-...+
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-------grvpvi~Gv~~~~t~~ai~~a~ 97 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-------GRVPVFVGATTLNTRDTIARTR 97 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-------CCCCEEEEeccCCHHHHHHHHH
Confidence 478888899999999999998876 4 4556666654 4455555443 3357788877655555433334
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHcCC
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG--RSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~--r~d~e~l~~~~~~~~~aGa 245 (620)
....+|++.+-+..|- -+..+.+++++-..+.++... ++.-+.|+....+ ..+++.+.+ +.+. .
T Consensus 98 ~A~~~Gad~vlv~~P~-------y~~~~~~~l~~yf~~va~a~~--~lPv~iYn~P~~tg~~l~~~~l~~----L~~~-p 163 (309)
T cd00952 98 ALLDLGADGTMLGRPM-------WLPLDVDTAVQFYRDVAEAVP--EMAIAIYANPEAFKFDFPRAAWAE----LAQI-P 163 (309)
T ss_pred HHHHhCCCEEEECCCc-------CCCCCHHHHHHHHHHHHHhCC--CCcEEEEcCchhcCCCCCHHHHHH----HhcC-C
Confidence 4456799988776653 134566676666555544321 3444567554333 344555544 4333 4
Q ss_pred cEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHH
Q 007056 246 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 325 (620)
Q Consensus 246 ~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEe 325 (620)
..+.+.||. ....+.+++..+. + + +.+-+..|. + +.+...|+...++.+.| .+|.--+.
T Consensus 164 nivgiKdss---d~~~~~~~i~~~~----~--~--~~v~~g~d~-~-----l~~~~~~~~~~~G~is~----~~n~~P~~ 222 (309)
T cd00952 164 QVVAAKYLG---DIGALLSDLAAVK----G--R--MRLLPLEDD-Y-----YAAARLFPEEVTAFWSS----GAACGPAP 222 (309)
T ss_pred CEEEEEecC---ChHHHHHHHHHcC----C--C--eEEeecchh-H-----HHHHHhcCccCccEEEe----ccccCcHH
Confidence 889999985 3345555554332 1 1 444443332 1 23344455444455554 45555555
Q ss_pred HHHHHH
Q 007056 326 VVMAFK 331 (620)
Q Consensus 326 vv~~L~ 331 (620)
.+...+
T Consensus 223 ~~~l~~ 228 (309)
T cd00952 223 VTALRD 228 (309)
T ss_pred HHHHHH
Confidence 554444
No 222
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.11 E-value=4.3 Score=44.09 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=63.7
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCHHHHHH
Q 007056 158 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHK-LRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 158 ~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~-l~~t~ee~l~~~~~~v~~a~~~G~~-~V~f~~ed~~r~d~e~l~~ 235 (620)
+.+++..+++. |++.|- +...+...+.. .+.+.++ +.+.|++|+++|.+ .|..+. -....+.+.+.+
T Consensus 15 ~l~~l~~ai~~----GADaVY--~G~~~~~~R~~a~nfs~~~----l~e~i~~ah~~gkk~~V~~N~-~~~~~~~~~~~~ 83 (347)
T COG0826 15 NLEDLKAAIAA----GADAVY--IGEKEFGLRRRALNFSVED----LAEAVELAHSAGKKVYVAVNT-LLHNDELETLER 83 (347)
T ss_pred CHHHHHHHHHc----CCCEEE--eCCcccccccccccCCHHH----HHHHHHHHHHcCCeEEEEecc-ccccchhhHHHH
Confidence 33444444443 666653 34333222222 4667665 77899999999985 233333 233344566789
Q ss_pred HHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCC
Q 007056 236 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGI 276 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~ 276 (620)
.++.+.+.|+|.|.+.|- -+|..+++..|+.
T Consensus 84 ~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l 114 (347)
T COG0826 84 YLDRLVELGVDAVIVADP----------GLIMLARERGPDL 114 (347)
T ss_pred HHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCCC
Confidence 999999999999999994 3788888888864
No 223
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.11 E-value=12 Score=39.70 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=83.7
Q ss_pred HHHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---EEEEcCCCC--CCCC
Q 007056 166 WEAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDA--GRSD 229 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~---~V~f~~ed~--~r~d 229 (620)
.+..+.+|.+.|.+-.+. |+ -++...++-+.++-.+.+.+.++.+|+. |-+ .|.+++.+. ...+
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~ 226 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLT 226 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCC
Confidence 344566899998876542 23 2444456677788778888888888875 222 244566432 2356
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCCccccC----------HHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH
Q 007056 230 RKFLYEILGEVIKVGATTLNIPDTVGITM----------PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 299 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~DTvG~~~----------P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 299 (620)
++...++++.+.++|++.|.+........ +....+.++.+++.++ ++|..-.--. ...++..+
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~----iPVi~~Ggi~---t~~~a~~~ 299 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK----IPVIAVGGIR---DPEVAEEI 299 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC----CCEEEeCCCC---CHHHHHHH
Confidence 78889999999999999998754332211 1233466777777763 4454332111 24566677
Q ss_pred HHh-cCcEE
Q 007056 300 ACA-GARQV 307 (620)
Q Consensus 300 v~a-GA~~V 307 (620)
++. ||+.|
T Consensus 300 l~~g~aD~V 308 (327)
T cd02803 300 LAEGKADLV 308 (327)
T ss_pred HHCCCCCee
Confidence 777 57765
No 224
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=88.11 E-value=23 Score=36.41 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=103.8
Q ss_pred HHHHHHHHHhHcCCCEEEEecC----CCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 99 EKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 99 ~Kl~Ia~~L~~~Gvd~IEvGfP----~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
+=+++++.+.+.|++.|=+--- ...+.+++.++++++... .|.+.+=+-...+|++..+.+ |+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~---------~pv~~~GGi~s~~d~~~~~~~----Ga 97 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVF---------IPLTVGGGIKSIEDVDKLLRA----GA 97 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcC---------CCEEEECCCCCHHHHHHHHHc----CC
Confidence 5678899999999998766421 123446788888888632 134444333456777766554 77
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC--CCC---------------CCCCHHHHHHHH
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--EDA---------------GRSDRKFLYEIL 237 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~--ed~---------------~r~d~e~l~~~~ 237 (620)
+.|-+ .++ .-+..+.+.++.++ .|-+.+.++. -+. .......+.+++
T Consensus 98 ~~viv--gt~-----------~~~~p~~~~~~~~~---~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~ 161 (254)
T TIGR00735 98 DKVSI--NTA-----------AVKNPELIYELADR---FGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWA 161 (254)
T ss_pred CEEEE--Chh-----------HhhChHHHHHHHHH---cCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHH
Confidence 77643 221 11122333333333 3422233322 111 011234556888
Q ss_pred HHHHHcCCcEEee--cCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHH-HHHHHHHHhc-CcEE-eeccc
Q 007056 238 GEVIKVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAG-ARQV-EVTIN 312 (620)
Q Consensus 238 ~~~~~aGa~~I~L--~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANslaAv~aG-A~~V-d~Ti~ 312 (620)
+.+.++|++.|.+ -|..|.+.... .++++.+++..+ +|+-..+ |... .-...++..| |+.| =++..
T Consensus 162 ~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~----ipvia~G----Gi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 162 KEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVK----IPVIASG----GAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCC----CCEEEeC----CCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 8889999999888 55656544333 356777777653 4454433 1112 2223445545 6664 22222
Q ss_pred cccCCcCcccHHHHHHHHHh
Q 007056 313 GIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 313 GlGERaGNa~lEevv~~L~~ 332 (620)
- .|..+++++...|+.
T Consensus 233 ~----~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 233 H----YREITIGEVKEYLAE 248 (254)
T ss_pred h----CCCCCHHHHHHHHHH
Confidence 1 244667777666664
No 225
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=87.73 E-value=17 Score=38.55 Aligned_cols=204 Identities=18% Similarity=0.191 Sum_probs=118.1
Q ss_pred HHHHhHcCCCEEEEec----------CCCC---h-hHHHHHHHHHHHhcccccccCCccceEE----eecccchhhHHHH
Q 007056 104 ARQLAKLGVDIIEAGF----------PAAS---K-EDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 165 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGf----------P~~s---~-~d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 165 (620)
++...++|++.|=++. |-.. - +-.+.+++|++... .|.++ ||+ +...+.+.
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~---------iPviaD~d~GyG--~~~~v~r~ 98 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACD---------LPLLVDIDTGFG--GAFNIART 98 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CHHHHHHH
Confidence 4666778998885532 2111 1 11355666665421 13333 233 55667777
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCEEEEcC-CCC-CCCCHHHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDA-GRSDRKFLYEILGEV 240 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~G~~~V~f~~-ed~-~r~d~e~l~~~~~~~ 240 (620)
++.+..+|+..|||-..+++-++-+.-+ .+.+|..++++.+++..+ +.+ +...+ -|+ .....+..++-+++.
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d-~~IiARTDa~~~~g~deAI~Ra~aY 175 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPD-FVIMARTDALAVEGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCC-eEEEEecCcccccCHHHHHHHHHHH
Confidence 7777788999999988776644432212 378888888876655443 333 22212 122 233577888889999
Q ss_pred HHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCc
Q 007056 241 IKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGN 320 (620)
Q Consensus 241 ~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGN 320 (620)
.++|||.|.++ |..+++++.++.+.+. .| +.+-+-.....++= +.-.--+.|+++|-.....+ |+-.
T Consensus 176 ~eAGAD~ifi~---~~~~~~~i~~~~~~~~--~P----l~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~--~aa~ 242 (292)
T PRK11320 176 VEAGADMIFPE---AMTELEMYRRFADAVK--VP----ILANITEFGATPLF--TTEELASAGVAMVLYPLSAF--RAMN 242 (292)
T ss_pred HHcCCCEEEec---CCCCHHHHHHHHHhcC--CC----EEEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH--HHHH
Confidence 99999999986 5667888888777652 22 21122222111111 13334456988885443332 5566
Q ss_pred ccHHHHHHHHHhcc
Q 007056 321 ASLEEVVMAFKCRG 334 (620)
Q Consensus 321 a~lEevv~~L~~~~ 334 (620)
.++.+++..|...|
T Consensus 243 ~a~~~~~~~l~~~g 256 (292)
T PRK11320 243 KAAENVYEAIRRDG 256 (292)
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666544
No 226
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=87.67 E-value=6.1 Score=41.60 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecC--CccccC-HHHHHHHHHHHHHhCCCCCce
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD--TVGITM-PTEFGKLIADIKANTPGIENV 279 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~D--TvG~~~-P~~v~~li~~l~~~~~~~~~v 279 (620)
..++++.|++.|+-.-.|+. .+.+.+..+++++.+.+...|-..- ++.+.. .+.+..++..+.++.+ .+
T Consensus 4 ~~~~l~~A~~~~yav~Afn~-----~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~v 75 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGAFNF-----NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS---IV 75 (282)
T ss_pred HHHHHHHHHHCCceEEEEEE-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC---CC
Confidence 45678889999875346666 5789999999999999876554432 223322 4567788888877763 27
Q ss_pred eEEEe-cCCCcchHHHHHHHHHHhcCcEE
Q 007056 280 VISTH-CQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 280 ~i~~H-~HND~GlAvANslaAv~aGA~~V 307 (620)
|+.+| .|-+ -+.....|+++|++.|
T Consensus 76 pv~lhlDH~~---~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 76 PVALHLDHGS---SYESCIKAIKAGFSSV 101 (282)
T ss_pred eEEEECCCCC---CHHHHHHHHHcCCCEE
Confidence 89988 4553 4678889999998765
No 227
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.66 E-value=5 Score=41.87 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=82.3
Q ss_pred EcCCC-CCCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEecC-CCcchHHH
Q 007056 220 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTA 294 (620)
Q Consensus 220 f~~ed-~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvA 294 (620)
+.|.+ .++.|.+-+.+.++.+.+.|++.|.++-|+| .++.+|-.++++.+.+...+ +++|-+|.- ++..-++.
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~~~ 86 (284)
T cd00950 9 VTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG--RVPVIAGTGSNNTAEAIE 86 (284)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEeccCCccHHHHHH
Confidence 34442 4578999999999999999999999999998 56889999999999988765 466767764 57888899
Q ss_pred HHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 295 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
-+..|.++||+.|-..--.+.. .+-++++..++.
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~~----~~~~~l~~~~~~ 120 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYNK----PSQEGLYAHFKA 120 (284)
T ss_pred HHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHH
Confidence 9999999999998776443321 233555555543
No 228
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=87.65 E-value=14 Score=41.35 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=80.8
Q ss_pred cCCCEEEEe--cCCC-ChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhH-HHHHHHHhcCCCCEEEEEecCC
Q 007056 110 LGVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATS 184 (620)
Q Consensus 110 ~Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~eal~~ag~~~v~i~~~~S 184 (620)
.+|+.|-+| -|.. ++.+. +.++.+.+..+. ..+ ..+..- +++..+ +..++.++.+|+.+|.+-+=+.
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~--~~~----~e~tie--~np~~lt~e~l~~l~~aG~~risiGvqS~ 172 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNF--APD----AEISIE--IDPRELDLEMLDALRELGFNRLSLGVQDF 172 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCC--CCC----CEEEEE--ecCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence 457777664 4653 34444 334444443211 111 123222 334334 2345677788999998865555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCCcEEeecCC
Q 007056 185 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIPDT 253 (620)
Q Consensus 185 d~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa~~I~L~DT 253 (620)
+-.....+++. ...+.+.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.|++.|.+-.-
T Consensus 173 ~~~~L~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l 240 (453)
T PRK09249 173 DPEVQKAVNRI--QPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNY 240 (453)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccC
Confidence 54555566654 2345677889999999985454433322 2467788889999999999998887653
No 229
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=87.62 E-value=12 Score=39.35 Aligned_cols=163 Identities=27% Similarity=0.291 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEe--cCCCCh------hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAG--FPAASK------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 166 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~------~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 166 (620)
.+.++-.+.++.+.+.|+|.||+- .|.... ++.+++.++.+.+...+ + .|.++-+ +...+++....
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~----~Pv~vKl-~~~~~~~~~~a 172 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-D----VPVIVKL-TPNVTDIVEIA 172 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-C----CCEEEEe-CCCchhHHHHH
Confidence 357888999999999999999994 354321 23345555554443221 1 1333222 22333454444
Q ss_pred HHHhcCCCCEEEEEecCCHH--HHHHH---h-----CCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCHHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGI--HMEHK---L-----RKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~--h~~~~---l-----~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~r~d~e~l~~ 235 (620)
+.+..+|++.|.++..+... |.+.. + +.+-........+.++.+++. ++. |.- .++-.+++.+.+
T Consensus 173 ~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip-ii~---~GGI~~~~da~~ 248 (296)
T cd04740 173 RAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP-IIG---VGGIASGEDALE 248 (296)
T ss_pred HHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC-EEE---ECCCCCHHHHHH
Confidence 55666799988776543321 11100 0 111111112233445555543 333 322 244466666655
Q ss_pred HHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 236 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
++ ++|||.|.++=..=. .|+-+.++.+.+.+.
T Consensus 249 ~l----~~GAd~V~igra~l~-~p~~~~~i~~~l~~~ 280 (296)
T cd04740 249 FL----MAGASAVQVGTANFV-DPEAFKEIIEGLEAY 280 (296)
T ss_pred HH----HcCCCEEEEchhhhc-ChHHHHHHHHHHHHH
Confidence 54 479999988855443 788887777776654
No 230
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=87.60 E-value=5.2 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEe
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAG 118 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvG 118 (620)
+..+-++.++.|.++|++.||+-
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec
Confidence 44456788889999999999996
No 231
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=87.59 E-value=12 Score=39.75 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec------CCCChhH-HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGF------PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGf------P~~s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+.++-++.++.+.+.|+++|=+.. +...... .+.++.|.+..+. ..+-.++. ...+.+..++
T Consensus 91 ~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~---------i~Ievl~~-d~~g~~e~l~ 160 (302)
T TIGR00510 91 PDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPN---------IKIETLVP-DFRGNIAALD 160 (302)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCC---------CEEEEeCC-cccCCHHHHH
Confidence 4789999999999999999986653 1111111 2445555443211 12333321 1112344677
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCC
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa 245 (620)
.++.+|.+.+...+-+++... ..++.. ...+...+.++++++. |+. +.-+..-+.--+.+.+.+.++.+.+.|.
T Consensus 161 ~l~~aG~dv~~hnlEt~~~l~-~~vrr~--~t~e~~Le~l~~ak~~~pgi~-~~TgiIVGlGETeee~~etl~~Lrelg~ 236 (302)
T TIGR00510 161 ILLDAPPDVYNHNLETVERLT-PFVRPG--ATYRWSLKLLERAKEYLPNLP-TKSGIMVGLGETNEEIKQTLKDLRDHGV 236 (302)
T ss_pred HHHHcCchhhcccccchHHHH-HHhCCC--CCHHHHHHHHHHHHHhCCCCe-ecceEEEECCCCHHHHHHHHHHHHhcCC
Confidence 777889888777665555433 333321 2234455677788877 442 2112221223445778899999999999
Q ss_pred cEEeec----------CCccccCHHHHHHHHH
Q 007056 246 TTLNIP----------DTVGITMPTEFGKLIA 267 (620)
Q Consensus 246 ~~I~L~----------DTvG~~~P~~v~~li~ 267 (620)
+.+.+. .-..+-+|+++..+=.
T Consensus 237 d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~ 268 (302)
T TIGR00510 237 TMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRS 268 (302)
T ss_pred CEEEeecccCCCCCCCccccCCCHHHHHHHHH
Confidence 988864 3445567777665543
No 232
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.36 E-value=4.1 Score=43.16 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=77.9
Q ss_pred EcCCC-CCCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHH
Q 007056 220 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 295 (620)
Q Consensus 220 f~~ed-~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 295 (620)
..|-+ .++.|.+-+.+.++.+++.|++.|.++-|.| .++++|-.++++.+.+...+ +++|-+|.-.+..-++.-
T Consensus 16 vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~t~~~i~~ 93 (303)
T PRK03620 16 VTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG--RVPVIAGAGGGTAQAIEY 93 (303)
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCHHHHHHH
Confidence 35543 4589999999999999999999999999988 46899999999999887765 355555553366777888
Q ss_pred HHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 296 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
+..|-++||+.|-. +...--+. +-+++...++
T Consensus 94 ~~~a~~~Gadav~~-~pP~y~~~---~~~~i~~~f~ 125 (303)
T PRK03620 94 AQAAERAGADGILL-LPPYLTEA---PQEGLAAHVE 125 (303)
T ss_pred HHHHHHhCCCEEEE-CCCCCCCC---CHHHHHHHHH
Confidence 88899999999844 33332222 3455554443
No 233
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=87.29 E-value=43 Score=35.42 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChh-H----HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-D----FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~-d----~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+.+.+.|=--+|..... . ...++.+++.. -+|...-|--+ ..+++.+|++
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~---------~vPValHLDH~~~~e~i~~ai~ 94 (287)
T PF01116_consen 24 VYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEA---------SVPVALHLDHGKDFEDIKRAID 94 (287)
T ss_dssp -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHS---------TSEEEEEEEEE-SHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHc---------CCCEEeecccCCCHHHHHHHHH
Confidence 46788999999999999998764434432111 1 13445555542 13444333333 3566777777
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCC---------CCCCCHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED---------AGRSDRKF 232 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed---------~~r~d~e~ 232 (620)
+ |...|.+ ... ..+.+|+++..++++++|+..|+. |+- +-|| ...|||+.
T Consensus 95 ~----GftSVM~-DgS---------~l~~eeNi~~T~~vv~~ah~~gv~-VEaElG~i~g~ed~~~~~~~~~~~~TdP~~ 159 (287)
T PF01116_consen 95 A----GFTSVMI-DGS---------ALPFEENIAITREVVEYAHAYGVS-VEAELGHIGGKEDGIESEEETESLYTDPEE 159 (287)
T ss_dssp H----TSSEEEE-E-T---------TS-HHHHHHHHHHHHHHHHHTT-E-EEEEESBSSSSCTTCSSSTT-TTCSSSHHH
T ss_pred h----Ccccccc-cCC---------cCCHHHHHHHHHHHHHhhhhhCCE-EEEEeeeeeccCCCccccccccccccCHHH
Confidence 6 8888744 333 367899999999999999999974 532 2222 23578898
Q ss_pred HHHHHHHHHHcCCcEEeec--CCccc--c--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcE
Q 007056 233 LYEILGEVIKVGATTLNIP--DTVGI--T--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~--DTvG~--~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~ 306 (620)
+.++++ +-|+|.+-++ -.=|. . .|.==.++++.|++.+| ++||.+|+ -.|+.--.-..|+..|+.-
T Consensus 160 a~~Fv~---~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~---~iPLVlHG--gSG~~~e~~~~ai~~Gi~K 231 (287)
T PF01116_consen 160 AKEFVE---ETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP---DIPLVLHG--GSGLPDEQIRKAIKNGISK 231 (287)
T ss_dssp HHHHHH---HHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH---TSEEEESS--CTTS-HHHHHHHHHTTEEE
T ss_pred HHHHHH---HhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC---CCCEEEEC--CCCCCHHHHHHHHHcCceE
Confidence 877765 5698875543 11121 1 45444678888888874 27788665 5677778899999999888
Q ss_pred Ee
Q 007056 307 VE 308 (620)
Q Consensus 307 Vd 308 (620)
|+
T Consensus 232 iN 233 (287)
T PF01116_consen 232 IN 233 (287)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 234
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=87.20 E-value=14 Score=40.87 Aligned_cols=164 Identities=21% Similarity=0.147 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEE--ecCC-CCh--------hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHH
Q 007056 96 TSKEKLDIARQLAKLGVDIIEA--GFPA-ASK--------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 164 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEv--GfP~-~s~--------~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 164 (620)
+.++-.++++.+.++|+|.||+ +.|. ... ++.+.+.+|.+.+...+ -.|.++=+ +....++..
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-----~~Pv~vKl-~p~~~~~~~ 184 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-----RLPVIVKL-TPNITDIRE 184 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-----CCcEEEEc-CCCcccHHH
Confidence 5788899999999999999998 4564 111 34566666666543321 12332222 334455666
Q ss_pred HHHHHhcCCCCEEEEEecCCH--------------HHHHHH-hCCCHHHHHHHHHHHHHHHHHc----CCCEEEEcCCCC
Q 007056 165 AWEAVKYAKRPRIHTFIATSG--------------IHMEHK-LRKTKQQVVEIARSMVKFARSL----GCDDVEFSPEDA 225 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd--------------~h~~~~-l~~t~ee~l~~~~~~v~~a~~~----G~~~V~f~~ed~ 225 (620)
..+++..+|++.|.++..+.. +|-... -+.|-........+.|..+++. .+. | +. -+
T Consensus 185 ~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ip-I-ig--~G 260 (420)
T PRK08318 185 PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLP-I-SG--IG 260 (420)
T ss_pred HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCC-E-Ee--ec
Confidence 666677789998887655543 111111 1344455555566677776654 232 2 22 24
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhC
Q 007056 226 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~ 273 (620)
+=.+.+.+.+++ .+||+.|-++=-.-+--|.-+.+++..+.+.+
T Consensus 261 GI~s~~da~e~i----~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l 304 (420)
T PRK08318 261 GIETWRDAAEFI----LLGAGTVQVCTAAMQYGFRIVEDMISGLSHYM 304 (420)
T ss_pred CcCCHHHHHHHH----HhCCChheeeeeeccCCchhHHHHHHHHHHHH
Confidence 456666666655 38999998887666656888888888875543
No 235
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=87.10 E-value=97 Score=39.32 Aligned_cols=237 Identities=14% Similarity=0.128 Sum_probs=128.2
Q ss_pred CCHHHHHHH----HHHHhHcCCCEEEEe-cCCCChhHHHHHHHHHHHh-cccccccCCccceEEeecccc-------hhh
Q 007056 95 LTSKEKLDI----ARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEV-GNAVDAESGYVPVICGLSRCN-------ERD 161 (620)
Q Consensus 95 fs~~~Kl~I----a~~L~~~Gvd~IEvG-fP~~s~~d~e~v~~i~~~~-~~~~~~~~~l~~~i~~~~r~~-------~~d 161 (620)
++.++-.+. ++.|.+.|||.|=+- +| +..+..++-..++.. ...-. . .|.++.++-.. -.+
T Consensus 157 it~del~~~y~eQi~~L~e~GVDllliETi~--d~~EakAal~a~~~~~~~~~~---~-lPv~vS~T~~d~~Gr~lsG~~ 230 (1229)
T PRK09490 157 VTFDELVAAYREQTRGLIEGGADLILIETIF--DTLNAKAAIFAVEEVFEELGV---R-LPVMISGTITDASGRTLSGQT 230 (1229)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeeeC--CHHHHHHHHHHHHHHHhhcCC---C-CeEEEEEEEECCCCccCCCCc
Confidence 566666555 677888999987664 34 333433222222211 00000 1 24444444211 135
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCC-------CCCCCCHHHH
Q 007056 162 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPE-------DAGRSDRKFL 233 (620)
Q Consensus 162 I~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~e-------d~~r~d~e~l 233 (620)
++.++..+...+...|.+-++..+-++ . +.++.+... .. .+.+.|- ..+..+|+++
T Consensus 231 ~ea~~~~l~~~~~~avGlNCs~GP~~m-----------~----~~l~~l~~~~~~-pi~vyPNAGlP~~~~~yd~tPe~~ 294 (1229)
T PRK09490 231 TEAFWNSLRHAKPLSIGLNCALGADEL-----------R----PYVEELSRIADT-YVSAHPNAGLPNAFGEYDETPEEM 294 (1229)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHHHH-----------H----HHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCHHHH
Confidence 777788777788887776555444333 2 233333222 22 2433221 2344578899
Q ss_pred HHHHHHHHHcC-CcEEeecCCccccCHHHHHHHHHHHHHhCCCC-Cce----------eEEEe-----------cC----
Q 007056 234 YEILGEVIKVG-ATTLNIPDTVGITMPTEFGKLIADIKANTPGI-ENV----------VISTH-----------CQ---- 286 (620)
Q Consensus 234 ~~~~~~~~~aG-a~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~-~~v----------~i~~H-----------~H---- 286 (620)
.+.++...+.| +..|.=|= ..+|+.++.+-+.++..-|.. ... ++.+. ++
T Consensus 295 a~~~~~~~~~G~v~IIGGCC---GTtPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~ 371 (1229)
T PRK09490 295 AAQIGEFAESGFLNIVGGCC---GTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGS 371 (1229)
T ss_pred HHHHHHHHHcCCCCEEEecC---CCCHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhcc
Confidence 99999999998 77765221 248999999988887543321 000 01111 11
Q ss_pred ---------CCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHH
Q 007056 287 ---------NDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMV 357 (620)
Q Consensus 287 ---------ND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v 357 (620)
.|+.-++.=+..-+++||+.||... |.+.+.+-..++.++..+..... ...+.-.||..+-.-+..-+
T Consensus 372 k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~-g~~~id~~eem~rvv~~i~~~~~--~~~vPlsIDS~~~~ViEaaL 448 (1229)
T PRK09490 372 AKFARLIKEEDYDEALDVARQQVENGAQIIDINM-DEGMLDSEAAMVRFLNLIASEPD--IARVPIMIDSSKWEVIEAGL 448 (1229)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHhhhc--cCCceEEEeCCcHHHHHHHH
Confidence 3334566667777899999999975 44455555566666666664211 01233345655544444444
Q ss_pred HH
Q 007056 358 EE 359 (620)
Q Consensus 358 ~~ 359 (620)
..
T Consensus 449 k~ 450 (1229)
T PRK09490 449 KC 450 (1229)
T ss_pred hh
Confidence 43
No 236
>PLN02417 dihydrodipicolinate synthase
Probab=87.09 E-value=4.4 Score=42.43 Aligned_cols=106 Identities=21% Similarity=0.175 Sum_probs=82.8
Q ss_pred cCCC-CCCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHHH
Q 007056 221 SPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTAN 295 (620)
Q Consensus 221 ~~ed-~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvAN 295 (620)
.|-| .+..|.+-+.+.++.+.+.|++-|.++-|.| .++.+|-.++++.+.+..++ +++|-+|+ +++.--++.-
T Consensus 11 TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~~ 88 (280)
T PLN02417 11 TPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG--KIKVIGNTGSNSTREAIHA 88 (280)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEEECCCccHHHHHHH
Confidence 4543 4578999999999999999999999999999 45888899999988887765 46677766 7888889999
Q ss_pred HHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 296 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
+..|-++||+.|-..---+. ..+-++++..++.
T Consensus 89 a~~a~~~Gadav~~~~P~y~----~~~~~~i~~~f~~ 121 (280)
T PLN02417 89 TEQGFAVGMHAALHINPYYG----KTSQEGLIKHFET 121 (280)
T ss_pred HHHHHHcCCCEEEEcCCccC----CCCHHHHHHHHHH
Confidence 99999999999877543222 2345666665543
No 237
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.06 E-value=4.4 Score=42.74 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=77.7
Q ss_pred EcCCC-CCCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHH
Q 007056 220 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 295 (620)
Q Consensus 220 f~~ed-~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN 295 (620)
..|-+ .++.|.+-+.++++.+++.|++.|.++-|+| .++.+|-.++++.+.+...+ +++|-+|.=.+..-++.-
T Consensus 14 vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--~~pvi~gv~~~t~~ai~~ 91 (296)
T TIGR03249 14 VTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG--KVPVYTGVGGNTSDAIEI 91 (296)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCccHHHHHHH
Confidence 34543 3579999999999999999999999999988 45888999999988887765 355555543347777888
Q ss_pred HHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 296 TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
+..|.++||+.+=. +...--+ .+-++++..++
T Consensus 92 a~~a~~~Gadav~~-~pP~y~~---~s~~~i~~~f~ 123 (296)
T TIGR03249 92 ARLAEKAGADGYLL-LPPYLIN---GEQEGLYAHVE 123 (296)
T ss_pred HHHHHHhCCCEEEE-CCCCCCC---CCHHHHHHHHH
Confidence 88999999999844 4443222 23455555443
No 238
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=87.05 E-value=12 Score=40.84 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=73.0
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEc
Q 007056 149 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-----TSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFS 221 (620)
Q Consensus 149 ~~i~~~~r~-~~~dI~~a~eal~~ag~~~v~i~~~-----~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~ 221 (620)
|.+.--+.+ ..+++..|++.+...|.+.|.+.-- .|... + +.++ ..++...|+. ++. |.|+
T Consensus 210 PVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~--------~-~~~d--l~ai~~lk~~~~lP-Vi~D 277 (352)
T PRK13396 210 PVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT--------R-NTLD--LSVIPVLRSLTHLP-IMID 277 (352)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC--------C-CCcC--HHHHHHHHHhhCCC-EEEC
Confidence 445444444 7788999999888778876655422 11101 0 1111 1344555555 675 8887
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEE----------eecCCccccCHHHHHHHHHHHHHh
Q 007056 222 PEDAGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 222 ~ed~~r~d~e~l~~~~~~~~~aGa~~I----------~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
|--+. -..+++..++.+++.+||+-+ .++|---.++|.++.++++.+++.
T Consensus 278 psH~~-G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i 337 (352)
T PRK13396 278 PSHGT-GKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVI 337 (352)
T ss_pred CcccC-CcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHH
Confidence 74322 234667789999999999933 467999999999999999998864
No 239
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=87.04 E-value=12 Score=38.66 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE--eeccc
Q 007056 265 LIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV--EVTIN 312 (620)
Q Consensus 265 li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V--d~Ti~ 312 (620)
.|..+++.++ +++|+=-|-. | +.-+++|+..||..| |.|+.
T Consensus 163 ~i~~L~~~f~----~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTld 205 (241)
T PF03102_consen 163 VIPTLKERFG----VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLD 205 (241)
T ss_dssp HHHHHHHHST----SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-
T ss_pred HHHHHHHhcC----CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECC
Confidence 6788898886 6899999987 4 455789999999998 55654
No 240
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=86.88 E-value=28 Score=36.23 Aligned_cols=149 Identities=13% Similarity=0.152 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEe-c----CCCChhHHH-HHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAG-F----PAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvG-f----P~~s~~d~e-~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+..+.-.++++.|.+.|++-+=+. + +.-+.+|+. .++..++... +-.+.+++.+..+.++.-+-.+
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-------~~~~vi~gv~~~~~~~~~~~a~ 89 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-------GRVPVIAGTGSNNTAEAIELTK 89 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-------CCCcEEeccCCccHHHHHHHHH
Confidence 4888899999999999999988653 2 344555653 4455555432 2235667766555444333334
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC--CCCCCHHHHHHHHHHHHHcCC
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed--~~r~d~e~l~~~~~~~~~aGa 245 (620)
..+++|++.|-+.-|.+ +..+.+++++-..+.++. .++..+.|+... ....+++.+.+++ +. .
T Consensus 90 ~a~~~G~d~v~~~~P~~-------~~~~~~~l~~~~~~ia~~---~~~pi~lYn~P~~~g~~ls~~~~~~L~----~~-p 154 (284)
T cd00950 90 RAEKAGADAALVVTPYY-------NKPSQEGLYAHFKAIAEA---TDLPVILYNVPGRTGVNIEPETVLRLA----EH-P 154 (284)
T ss_pred HHHHcCCCEEEEccccc-------CCCCHHHHHHHHHHHHhc---CCCCEEEEEChhHhCCCCCHHHHHHHh----cC-C
Confidence 44677999887765532 345777777666655553 355545665443 3345666665554 33 5
Q ss_pred cEEeecCCccccCHHHHHHHH
Q 007056 246 TTLNIPDTVGITMPTEFGKLI 266 (620)
Q Consensus 246 ~~I~L~DTvG~~~P~~v~~li 266 (620)
..+.+.|+.| .+..+.+++
T Consensus 155 ~v~giK~s~~--~~~~~~~~~ 173 (284)
T cd00950 155 NIVGIKEATG--DLDRVSELI 173 (284)
T ss_pred CEEEEEECCC--CHHHHHHHH
Confidence 7899999987 344555544
No 241
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=86.88 E-value=4.6 Score=42.40 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHHHHHHH
Q 007056 225 AGRSDRKFLYEILGEVIKV-GATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAG 299 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~a-Ga~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaA 299 (620)
.+..|.+-+.+.++.+.+. |++-|.++-|+| .++.+|-.++++...+...+ +++|-+++ +++.--++..+..|
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG--KVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCeEEeccCCCCHHHHHHHHHHH
Confidence 3578999999999999999 999999999988 45788888899988887765 57788877 78888899999999
Q ss_pred HHhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 300 ACAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 300 v~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
.++||+.|=..-- .--+ .+-++++..++
T Consensus 93 ~~~Gad~v~~~~P-~y~~---~~~~~i~~~~~ 120 (288)
T cd00954 93 EELGYDAISAITP-FYYK---FSFEEIKDYYR 120 (288)
T ss_pred HHcCCCEEEEeCC-CCCC---CCHHHHHHHHH
Confidence 9999999864332 2222 23455555443
No 242
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.83 E-value=13 Score=38.58 Aligned_cols=139 Identities=13% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeec-ccchhhHHHHHHHHhcCCCCEEEEEe-cCCHHHH
Q 007056 111 GVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS-RCNERDIKTAWEAVKYAKRPRIHTFI-ATSGIHM 188 (620)
Q Consensus 111 Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~-r~~~~dI~~a~eal~~ag~~~v~i~~-~~Sd~h~ 188 (620)
.+|.+-+|..- -..++.++.+++. + .|++.--+ .+..+++..|++.+...|.+.|.+.- .++..
T Consensus 98 ~vdilqIgs~~--~~n~~LL~~va~t-g---------kPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y-- 163 (250)
T PRK13397 98 YLDVIQVGARN--MQNFEFLKTLSHI-D---------KPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGY-- 163 (250)
T ss_pred cCCEEEECccc--ccCHHHHHHHHcc-C---------CeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCC--
Confidence 36666665432 2335677776653 1 14554444 46788999999999888887776653 32221
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE----------eecCCcccc
Q 007056 189 EHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGIT 257 (620)
Q Consensus 189 ~~~l~~t~ee~l~~~~~~v~~a~~-~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I----------~L~DTvG~~ 257 (620)
....+..++ + ..+...|+ .++. |.|++- =+--..+++..+..+++.+||+-+ .++|---.+
T Consensus 164 ----~~~~~n~~d-l-~ai~~lk~~~~lP-Vivd~S-Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l 235 (250)
T PRK13397 164 ----DVETRNMLD-I-MAVPIIQQKTDLP-IIVDVS-HSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQI 235 (250)
T ss_pred ----CCccccccC-H-HHHHHHHHHhCCC-eEECCC-CCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhC
Confidence 111111122 1 23334444 5665 777653 222346899999999999999933 367888889
Q ss_pred CHHHHHHHHHHHHH
Q 007056 258 MPTEFGKLIADIKA 271 (620)
Q Consensus 258 ~P~~v~~li~~l~~ 271 (620)
+|+++.++++.++.
T Consensus 236 ~~~~l~~l~~~~~~ 249 (250)
T PRK13397 236 DYKQLEQLGQELWQ 249 (250)
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999998864
No 243
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.81 E-value=2.7 Score=46.45 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccc
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 312 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~ 312 (620)
..+.+++++++|+|.|.| |+.. ..+..+.++|+++++.+|+ +.|-+. | -.-...+..++++||+.|-.
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~---~~vi~g--~--V~T~e~a~~l~~aGaD~I~v--- 221 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPN---LDLIAG--N--IVTKEAALDLISVGADCLKV--- 221 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCC---CcEEEE--e--cCCHHHHHHHHHcCCCEEEE---
Confidence 557888899999999998 6655 3378899999999999985 333322 1 12255778899999999983
Q ss_pred cccCC
Q 007056 313 GIGER 317 (620)
Q Consensus 313 GlGER 317 (620)
|+|..
T Consensus 222 G~g~G 226 (404)
T PRK06843 222 GIGPG 226 (404)
T ss_pred CCCCC
Confidence 66653
No 244
>PRK06852 aldolase; Validated
Probab=86.74 E-value=13 Score=39.62 Aligned_cols=198 Identities=12% Similarity=0.100 Sum_probs=111.9
Q ss_pred eCCCcccC-CCCCC--CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeeccc
Q 007056 81 DTTLRDGE-QSPGA--TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC 157 (620)
Q Consensus 81 DtTLRDG~-Qs~g~--~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~ 157 (620)
|=.+=.|. .+.+. ....++-..+++.+.+.|++.+=+-. . .++.......+ ..+...+.+.+..
T Consensus 39 DHG~~~Gp~~~~~~~~~~gl~dp~~~i~~~~~~g~dav~~~~-----G---~l~~~~~~~~~-----~~lIlkl~~~t~l 105 (304)
T PRK06852 39 DQKIEHLNDDFYGEGIAKDDADPEHLFRIASKAKIGVFATQL-----G---LIARYGMDYPD-----VPYLVKLNSKTNL 105 (304)
T ss_pred cCCcccCCcccccccCCcccCCHHHHHHHHHhcCCCEEEeCH-----H---HHHhhccccCC-----CcEEEEECCCCCc
Confidence 66666665 22222 34556667789999999999887631 1 11111111000 0122222221111
Q ss_pred -----------chhhHHHHHHHHhc--CCCC--EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE--
Q 007056 158 -----------NERDIKTAWEAVKY--AKRP--RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-- 220 (620)
Q Consensus 158 -----------~~~dI~~a~eal~~--ag~~--~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f-- 220 (620)
.--+++.|++..+. .|++ .+++|.. |+ ...+.++++.++++.|++.|+..+..
T Consensus 106 ~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~---------~E~~ml~~l~~v~~ea~~~GlPll~~~y 175 (304)
T PRK06852 106 VKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SE---------YESEMLSEAAQIIYEAHKHGLIAVLWIY 175 (304)
T ss_pred CCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 11236667664211 1244 4566655 33 23478899999999999999974432
Q ss_pred --cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc--cccCHHHHHHHHHHHHHhCCCCCceeEEEecC-CCcchHHHH
Q 007056 221 --SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV--GITMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTAN 295 (620)
Q Consensus 221 --~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv--G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvAN 295 (620)
+..-....+++++.-.++.+.++|||.|-..=|. |-..|+.+.+.+... -..| +.+.-=.. ++.. .+.-
T Consensus 176 prG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~-g~vp----VviaGG~k~~~~e-~L~~ 249 (304)
T PRK06852 176 PRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA-GRTK----VVCAGGSSTDPEE-FLKQ 249 (304)
T ss_pred ccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC-CCCc----EEEeCCCCCCHHH-HHHH
Confidence 2211233578999999999999999998766552 334678888877642 0111 22221112 3322 4777
Q ss_pred HHHHHH-hcCcEE
Q 007056 296 TIAGAC-AGARQV 307 (620)
Q Consensus 296 slaAv~-aGA~~V 307 (620)
+..|++ +||..|
T Consensus 250 v~~ai~~aGa~Gv 262 (304)
T PRK06852 250 LYEQIHISGASGN 262 (304)
T ss_pred HHHHHHHcCCcee
Confidence 788888 898776
No 245
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=86.73 E-value=22 Score=36.07 Aligned_cols=196 Identities=15% Similarity=0.164 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhHcCCCEE---EEec-CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 98 KEKLDIARQLAKLGVDII---EAGF-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~I---EvGf-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.+-+++++.|.+.|++.| .+.. ....+.+++.++++++.+. .|.+.+=+-...+|++..++ .|
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~---------~pv~~~GGI~s~~d~~~~l~----~G 93 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF---------IPLTVGGGIRSLEDARRLLR----AG 93 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC---------CCEEEeCCCCCHHHHHHHHH----cC
Confidence 366789999999999944 4431 1123446788888888642 14444433345667766554 36
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-----------CCC-CCCHHHHHHHHHHHH
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-----------DAG-RSDRKFLYEILGEVI 241 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-----------d~~-r~d~e~l~~~~~~~~ 241 (620)
++.|-+ .+ ..+ +..+.+.++++...+..+ .+.+++- +.+ ........++++.+.
T Consensus 94 ~~~v~i--g~-~~~----------~~p~~~~~i~~~~~~~~i-~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 159 (243)
T cd04731 94 ADKVSI--NS-AAV----------ENPELIREIAKRFGSQCV-VVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVE 159 (243)
T ss_pred CceEEE--Cc-hhh----------hChHHHHHHHHHcCCCCE-EEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHH
Confidence 776633 21 111 112333344333321111 1222211 001 112344567788888
Q ss_pred HcCCcEEee--cCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh-cCcEEeeccccccCCc
Q 007056 242 KVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA-GARQVEVTINGIGERA 318 (620)
Q Consensus 242 ~aGa~~I~L--~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a-GA~~Vd~Ti~GlGERa 318 (620)
+.|++.|.+ -+..|..... -.++++.+++..+ +|+-.-+--. .......+++. ||+.| +.|-.==.
T Consensus 160 ~~G~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~~~----~pvia~GGi~---~~~di~~~l~~~g~dgv---~vg~al~~ 228 (243)
T cd04731 160 ELGAGEILLTSMDRDGTKKGY-DLELIRAVSSAVN----IPVIASGGAG---KPEHFVEAFEEGGADAA---LAASIFHF 228 (243)
T ss_pred HCCCCEEEEeccCCCCCCCCC-CHHHHHHHHhhCC----CCEEEeCCCC---CHHHHHHHHHhCCCCEE---EEeHHHHc
Confidence 999998888 4444443322 3456666766542 4454433111 12334444554 66654 22211113
Q ss_pred CcccHHHHHHHHH
Q 007056 319 GNASLEEVVMAFK 331 (620)
Q Consensus 319 GNa~lEevv~~L~ 331 (620)
|..+++++...|.
T Consensus 229 ~~~~~~~~~~~~~ 241 (243)
T cd04731 229 GEYTIAELKEYLA 241 (243)
T ss_pred CCCCHHHHHHHHh
Confidence 5556666555544
No 246
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=86.72 E-value=15 Score=38.84 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc----------c---ccCHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV----------G---ITMPT 260 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv----------G---~~~P~ 260 (620)
.+.+|.++.+.+.++.. .+. |..+.|+++-.++ .+.+.++.+.++|+.-|+|-|.+ | ...++
T Consensus 58 l~~~e~~~~~~~I~~~~---~lP-v~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~e 132 (290)
T TIGR02321 58 LSMSTHLEMMRAIASTV---SIP-LIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIE 132 (290)
T ss_pred CCHHHHHHHHHHHHhcc---CCC-EEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHH
Confidence 46777777766555543 454 8889987777666 58999999999999999999975 1 34667
Q ss_pred HHHHHHHHHHHhCCCCCceeEEE------ecCCCcchHHHHHHHHHHhcCcEE
Q 007056 261 EFGKLIADIKANTPGIENVVIST------HCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 261 ~v~~li~~l~~~~~~~~~v~i~~------H~HND~GlAvANslaAv~aGA~~V 307 (620)
++.+.|+.+++.-.+. +..|-. +.| .+--|+.=+.+..+||||.|
T Consensus 133 e~~~kI~Aa~~a~~~~-d~~I~ARTDa~~~~~-g~deAI~Ra~aY~eAGAD~i 183 (290)
T TIGR02321 133 EFQGKIAAATAARADR-DFVVIARVEALIAGL-GQQEAVRRGQAYEEAGADAI 183 (290)
T ss_pred HHHHHHHHHHHhCCCC-CEEEEEEeccccccC-CHHHHHHHHHHHHHcCCCEE
Confidence 7788888777642221 222211 111 23457777788888888876
No 247
>PRK05481 lipoyl synthase; Provisional
Probab=86.70 E-value=18 Score=38.22 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCC--Chh-HH----HHHHHHHHHhcccccccCCccceEEeecccchhhHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAA--SKE-DF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 165 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~--s~~-d~----e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 165 (620)
.+++.++.++.++.+.+.|+++|-+-.-.. .+. +. +.++.|.+..+ +. .|-.+... ..+....
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p-------~i--rI~~l~~~-~~~~~e~ 147 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNP-------GT--TIEVLIPD-FRGRMDA 147 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCC-------Cc--EEEEEccC-CCCCHHH
Confidence 569999999999999999999887742111 111 12 33444443211 11 23333321 1111122
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCHHHHHHHHHHHHHc
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEVIKV 243 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a 243 (620)
+..++.+|...+..+.-+|+ .+...+++. ...+...+.++.+++. |+. +.-+..-+.--+.+...+.++.+.+.
T Consensus 148 L~~l~~ag~~i~~~~~ets~-~vlk~m~r~--~t~e~~le~i~~ar~~~pgi~-~~t~~IvGfGET~ed~~~tl~~lrel 223 (289)
T PRK05481 148 LLTVLDARPDVFNHNLETVP-RLYKRVRPG--ADYERSLELLKRAKELHPGIP-TKSGLMVGLGETDEEVLEVMDDLRAA 223 (289)
T ss_pred HHHHHhcCcceeeccccChH-HHHHHhCCC--CCHHHHHHHHHHHHHhCCCCe-EeeeeEEECCCCHHHHHHHHHHHHhc
Confidence 33345568777766655554 334445431 2234456678888888 764 32222112223456677889999999
Q ss_pred CCcEEee-------c---CCccccCHHHHHHHHHHHHH
Q 007056 244 GATTLNI-------P---DTVGITMPTEFGKLIADIKA 271 (620)
Q Consensus 244 Ga~~I~L-------~---DTvG~~~P~~v~~li~~l~~ 271 (620)
+.+.+.+ + +--..-.|++..++.....+
T Consensus 224 ~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~ 261 (289)
T PRK05481 224 GVDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALE 261 (289)
T ss_pred CCCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHH
Confidence 9987776 2 23333445555555554443
No 248
>PRK05660 HemN family oxidoreductase; Provisional
Probab=86.64 E-value=14 Score=40.53 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=81.7
Q ss_pred cCCCEEEEe--cCCCC-hhHHH-HHHHHHHHhcccccccCCccceEEeecccchhhHH-HHHHHHhcCCCCEEEEEecCC
Q 007056 110 LGVDIIEAG--FPAAS-KEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATS 184 (620)
Q Consensus 110 ~Gvd~IEvG--fP~~s-~~d~e-~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~eal~~ag~~~v~i~~~~S 184 (620)
.+|+.|=+| -|..- +++.+ .++.+.+..+.. . + ..+..-+ ++.++. .-++.++.+|+.+|.+-+=+.
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~--~--~--~eit~e~--np~~l~~e~l~~Lk~~Gv~risiGvqS~ 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFA--P--D--AEITMEA--NPGTVEADRFVGYQRAGVNRISIGVQSF 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCC--C--C--cEEEEEe--CcCcCCHHHHHHHHHcCCCEEEeccCcC
Confidence 456666554 56543 44443 344444432111 1 1 2333333 444443 336678889999999977666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCCcEEee
Q 007056 185 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNI 250 (620)
Q Consensus 185 d~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa~~I~L 250 (620)
+-.....+|+. ...+.+.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.|++.|.+
T Consensus 129 ~~~~L~~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~ 193 (378)
T PRK05660 129 SEEKLKRLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSW 193 (378)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEe
Confidence 66666677764 3456677889999999986444433322 2467788889999999999998864
No 249
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.59 E-value=5.2 Score=41.58 Aligned_cols=101 Identities=23% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEecC-CCcchHHHHHHHHH
Q 007056 225 AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGA 300 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvANslaAv 300 (620)
.+..|.+-+.+.++.+.+.|++.|.++-|.| .++.+|-.++++.+++..++ +++|-+|.- ++.--++.-+..|-
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG--RVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEecCCccHHHHHHHHHHHH
Confidence 3478999999999999999999999999999 45789999999999988764 466666663 44555777888899
Q ss_pred HhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 301 CAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 301 ~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
++||+.|-..---+-. .+-++++..+.
T Consensus 90 ~~Gad~v~v~pP~y~~----~~~~~~~~~~~ 116 (281)
T cd00408 90 EAGADGVLVVPPYYNK----PSQEGIVAHFK 116 (281)
T ss_pred HcCCCEEEECCCcCCC----CCHHHHHHHHH
Confidence 9999998775543322 23455554443
No 250
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=86.38 E-value=5.1 Score=41.92 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=78.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCCccc---cCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHHHHHHHH
Q 007056 225 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGA 300 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaAv 300 (620)
.++.|.+-+.+.++.+.+.|++-|.++-|+|= ++.+|-.++++.+.+...+ +++|-+|. +++.--++.-+..|.
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG--RVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999989884 5788888899888887765 46666665 667788899999999
Q ss_pred HhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 301 CAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 301 ~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
++||+.|-..---.. + .+-++++..++.
T Consensus 91 ~~Gad~v~v~pP~y~-~---~~~~~i~~~~~~ 118 (285)
T TIGR00674 91 DVGADGFLVVTPYYN-K---PTQEGLYQHFKA 118 (285)
T ss_pred HcCCCEEEEcCCcCC-C---CCHHHHHHHHHH
Confidence 999999877643332 2 234566555443
No 251
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=86.33 E-value=13 Score=40.23 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=74.6
Q ss_pred ceEEeeccc-chhhHHHHHHHHhcCCCCEEEEEec-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCC
Q 007056 149 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDA 225 (620)
Q Consensus 149 ~~i~~~~r~-~~~dI~~a~eal~~ag~~~v~i~~~-~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~ 225 (620)
|.+.--+.+ ..+++..+.+.+...|.+.+.+.-- ++..- +.++ +.++ ..++...|+. ++. |.++| +=
T Consensus 202 PViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~-----~~~~-~~ld--l~ai~~lk~~~~lP-Vi~d~-sH 271 (335)
T PRK08673 202 PVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFE-----TATR-NTLD--LSAVPVIKKLTHLP-VIVDP-SH 271 (335)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCC-----CcCh-hhhh--HHHHHHHHHhcCCC-EEEeC-CC
Confidence 444433333 6788888888888888887777642 22110 1111 2222 2445555553 665 66655 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEE----------eecCCccccCHHHHHHHHHHHHHh
Q 007056 226 GRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I----------~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
+--..+++..+..+++.+||+-+ .++|--=.++|+++.++++.+++-
T Consensus 272 ~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i 328 (335)
T PRK08673 272 ATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAI 328 (335)
T ss_pred CCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHH
Confidence 34456889999999999999822 358999999999999999999863
No 252
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=86.26 E-value=14 Score=40.05 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=82.9
Q ss_pred HHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---EEEEcCCCCC--CCCH
Q 007056 167 EAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDAG--RSDR 230 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~---~V~f~~ed~~--r~d~ 230 (620)
+..+.+|.+.|.+..+- |+ .++..++|=+.++-.+.+.+.++.+|+. |.+ .+.+++.|.. ..++
T Consensus 144 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~ 223 (353)
T cd02930 144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTW 223 (353)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCH
Confidence 33456899999885531 33 3555567778888888888888888875 433 2455665532 3578
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCcccc---C-------HH-HHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGIT---M-------PT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 299 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~~---~-------P~-~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 299 (620)
+...++++.+.++|+|.|.+ |.|.. + |. ....+.+.+++.++ +||..-.--. ....+..+
T Consensus 224 ~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~----iPVi~~G~i~---~~~~a~~~ 294 (353)
T cd02930 224 EEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVD----IPVIASNRIN---TPEVAERL 294 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCC----CCEEEcCCCC---CHHHHHHH
Confidence 88999999999999999987 33321 1 11 13445667777663 4555432211 24556666
Q ss_pred HHhc-CcEE
Q 007056 300 ACAG-ARQV 307 (620)
Q Consensus 300 v~aG-A~~V 307 (620)
++.| +|.|
T Consensus 295 i~~g~~D~V 303 (353)
T cd02930 295 LADGDADMV 303 (353)
T ss_pred HHCCCCChh
Confidence 7765 4443
No 253
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=86.25 E-value=5 Score=42.38 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=74.3
Q ss_pred EcCCC-CCCCCHHHHHHHHHHHHHcCCcEEeecCCccc---cCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHH
Q 007056 220 FSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTA 294 (620)
Q Consensus 220 f~~ed-~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvA 294 (620)
+.|-+ .++.|.+-+.+.++.+.+.|++.|.++-|.|= ++-+|-.++++.+.+...+ +++|-+|. +++.--++.
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~~~t~~ai~ 86 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGALNHDETLE 86 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCcchHHHHHH
Confidence 45543 35799999999999999999999999999984 5778888888888877765 47776665 788888999
Q ss_pred HHHHHHHhcCcEEeecc
Q 007056 295 NTIAGACAGARQVEVTI 311 (620)
Q Consensus 295 NslaAv~aGA~~Vd~Ti 311 (620)
-+..|.++||+.|=..-
T Consensus 87 ~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHcCCCEEEEcC
Confidence 99999999999986554
No 254
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=86.25 E-value=49 Score=35.08 Aligned_cols=196 Identities=18% Similarity=0.277 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE-e----cCCCChhHHHHH-HHHHHHhcccccccCCccceEEeecccchhh-HHHHHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFEAV-RTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAWE 167 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEv-G----fP~~s~~d~e~v-~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~e 167 (620)
++.+.-.++++.|.+.|++-|=+ | ||.-+.+|...+ +...+... +.+|.|++.+-.+-++ |+.+ +
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~-------grvpviaG~g~~~t~eai~la-k 93 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG-------GRVPVIAGVGSNSTAEAIELA-K 93 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC-------CCCcEEEecCCCcHHHHHHHH-H
Confidence 67888899999999999997655 4 465666665443 44444432 3457888877654443 4444 3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
..+..|++.+-+..|-. .+-+.++..+-....++.+ ++ .-+-|+.+. ++-.+...+.+.++.+ -...
T Consensus 94 ~a~~~Gad~il~v~PyY-------~k~~~~gl~~hf~~ia~a~-~l--PvilYN~P~--~tg~~l~~e~i~~la~-~~ni 160 (299)
T COG0329 94 HAEKLGADGILVVPPYY-------NKPSQEGLYAHFKAIAEAV-DL--PVILYNIPS--RTGVDLSPETIARLAE-HPNI 160 (299)
T ss_pred HHHhcCCCEEEEeCCCC-------cCCChHHHHHHHHHHHHhc-CC--CEEEEeCcc--ccCCCCCHHHHHHHhc-CCCE
Confidence 34567999887766642 2445666666666555554 44 346676443 2322333444445555 5689
Q ss_pred EeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHH
Q 007056 248 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV 327 (620)
Q Consensus 248 I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv 327 (620)
+.+.|+.| .+..+ ..+++..+.. +. +.+=+.+++ .+.++..|++.+ +.| ++|..-++.+
T Consensus 161 vgiKd~~g-----d~~~~-~~~~~~~~~~-~f-~v~~G~d~~------~~~~~~~G~~G~---is~----~~N~~p~~~~ 219 (299)
T COG0329 161 VGVKDSSG-----DLDRL-EEIIAALGDR-DF-IVLSGDDEL------ALPALLLGADGV---ISV----TANVAPELAV 219 (299)
T ss_pred EEEEeCCc-----CHHHH-HHHHHhcCcc-Ce-eEEeCchHH------HHHHHhCCCCeE---Eec----ccccCHHHHH
Confidence 99999999 22222 2233333321 01 222233322 344455777654 333 5778777766
Q ss_pred HHHHh
Q 007056 328 MAFKC 332 (620)
Q Consensus 328 ~~L~~ 332 (620)
...+.
T Consensus 220 ~l~~~ 224 (299)
T COG0329 220 ELYRA 224 (299)
T ss_pred HHHHH
Confidence 55554
No 255
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=86.25 E-value=21 Score=38.45 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc--EEee--cCCccccCHHHHH--HHHHHHHHhCCCCCc
Q 007056 205 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT--TLNI--PDTVGITMPTEFG--KLIADIKANTPGIEN 278 (620)
Q Consensus 205 ~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~--~I~L--~DTvG~~~P~~v~--~li~~l~~~~~~~~~ 278 (620)
+.++++.+.|.. |..+- +.++.+.+.+.++.+.+.|.. .|.| | |.++-+|.+-. ..|..+++.++
T Consensus 124 pLL~~~A~~gkP-vilSt---Gmatl~Ei~~Av~~i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f~---- 194 (329)
T TIGR03569 124 PLLKKIARFGKP-VILST---GMATLEEIEAAVGVLRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAFD---- 194 (329)
T ss_pred HHHHHHHhcCCc-EEEEC---CCCCHHHHHHHHHHHHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHhC----
Confidence 455666667765 66653 235777777778777777864 2444 5 34566665544 35678888874
Q ss_pred eeEEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 279 VVISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 279 v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
++|++=-|- ++..-+++|+..||+.|+-=+
T Consensus 195 ~pVG~SdHt---~G~~~~~aAvalGA~iIEkH~ 224 (329)
T TIGR03569 195 LPVGYSDHT---LGIEAPIAAVALGATVIEKHF 224 (329)
T ss_pred CCEEECCCC---ccHHHHHHHHHcCCCEEEeCC
Confidence 568875554 346777999999999986443
No 256
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=86.21 E-value=4.8 Score=42.33 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=76.4
Q ss_pred EcCCC-CCCCCHHHHHHHHHHHHH-cCCcEEeecCCccc---cCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHH
Q 007056 220 FSPED-AGRSDRKFLYEILGEVIK-VGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLST 293 (620)
Q Consensus 220 f~~ed-~~r~d~e~l~~~~~~~~~-aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAv 293 (620)
..|-+ .++.|.+-+.+.++.+++ .|++.|.++-|+|= ++.+|-.++++.+.+..++ +++|-+|. +++.--++
T Consensus 12 ~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~--~~~viagvg~~~t~~ai 89 (293)
T PRK04147 12 LTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG--KVKLIAQVGSVNTAEAQ 89 (293)
T ss_pred ECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC--CCCEEecCCCCCHHHHH
Confidence 35543 457899999999999999 99999999999885 6889999999999888775 47777777 78889999
Q ss_pred HHHHHHHHhcCcEEeecc
Q 007056 294 ANTIAGACAGARQVEVTI 311 (620)
Q Consensus 294 ANslaAv~aGA~~Vd~Ti 311 (620)
..+..|.++||+.|=+.-
T Consensus 90 ~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 90 ELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 999999999999987554
No 257
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.19 E-value=7.7 Score=41.70 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=82.6
Q ss_pred HHHHhcCCCCEEEEEecC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---EEEEcCCCCC--CCC
Q 007056 166 WEAVKYAKRPRIHTFIAT--------SGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDAG--RSD 229 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~--------Sd~--h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~---~V~f~~ed~~--r~d 229 (620)
.+..+.+|.+.|.|-.+- |+. ++...+|=|.|+-.+...+.++.+|+. |-+ .|.+++++.. -.+
T Consensus 155 A~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~ 234 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFT 234 (338)
T ss_pred HHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCC
Confidence 334567899999887663 554 445567778888888888888888865 322 2345654321 246
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCCccccC---------------HHHHHHHHHHHHHhCCCCCceeEEE-ecCCCcchHH
Q 007056 230 RKFLYEILGEVIKVGATTLNIPDTVGITM---------------PTEFGKLIADIKANTPGIENVVIST-HCQNDLGLST 293 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~DTvG~~~---------------P~~v~~li~~l~~~~~~~~~v~i~~-H~HND~GlAv 293 (620)
++...++++.+.++|++.|.+.. |... +--..++.+.+++.++ +||.. -.. ...
T Consensus 235 ~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~----iPVi~~G~i----~t~ 304 (338)
T cd04733 235 EEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK----TPLMVTGGF----RTR 304 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcC----CCEEEeCCC----CCH
Confidence 78889999999999999988632 2110 1112356667777663 34432 111 135
Q ss_pred HHHHHHHHhc-CcEE
Q 007056 294 ANTIAGACAG-ARQV 307 (620)
Q Consensus 294 ANslaAv~aG-A~~V 307 (620)
..+..+++.| ||.|
T Consensus 305 ~~a~~~l~~g~aD~V 319 (338)
T cd04733 305 AAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHcCCCCee
Confidence 6677777776 5554
No 258
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=86.04 E-value=7.6 Score=43.58 Aligned_cols=134 Identities=14% Similarity=0.168 Sum_probs=82.2
Q ss_pred cCCCEEEEe--cCCC-ChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhH-HHHHHHHhcCCCCEEEEEecCC
Q 007056 110 LGVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATS 184 (620)
Q Consensus 110 ~Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~eal~~ag~~~v~i~~~~S 184 (620)
.+|+.|-+| -|.. ++++. +.++.|.+..+.. . ...+..- +++..+ +..++.++.+|+.+|.+-+=+.
T Consensus 102 ~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~--~----~~e~tie--~~p~~lt~e~l~~L~~~G~~rvsiGvQS~ 173 (453)
T PRK13347 102 RRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFA--P----EAEIAVE--IDPRTVTAEMLQALAALGFNRASFGVQDF 173 (453)
T ss_pred CeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCC--C----CceEEEE--eccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 356666664 4653 35544 3345554432110 0 0133332 344444 3346777888999999876666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCCcEEeecCC
Q 007056 185 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIPDT 253 (620)
Q Consensus 185 d~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa~~I~L~DT 253 (620)
+-.....+|+. ...+.+.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.|++.|.+-.-
T Consensus 174 ~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l 241 (453)
T PRK13347 174 DPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGY 241 (453)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 65666677764 2355677889999999986444332211 2457788889999999999998887654
No 259
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=86.00 E-value=9.6 Score=39.58 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=81.8
Q ss_pred HHHHHHhHcCCCEEEEec---------CCCCh----hHHHHHHHHHHHhcccccccCCccceEEee--cc---cchhhHH
Q 007056 102 DIARQLAKLGVDIIEAGF---------PAASK----EDFEAVRTIAKEVGNAVDAESGYVPVICGL--SR---CNERDIK 163 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGf---------P~~s~----~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~--~r---~~~~dI~ 163 (620)
--++.++++|+|.|=+|+ |...+ +....++.+++-.+.. ..++.+ +- ..++-++
T Consensus 23 ~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p--------~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 23 PTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRA--------LVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCC--------eEEEeCCCCcccCCHHHHHH
Confidence 457888999999998884 22111 1234455555432211 123322 21 1222356
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE----EcCC---------CCCCCC-
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE---------DAGRSD- 229 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~----f~~e---------d~~r~d- 229 (620)
.+.+.++.+|+..|++-.. ....+.|+.+.+.|+. |. +.|. -.+|++
T Consensus 95 ~a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agip-V~gHiGL~pq~~~~~gg~~~~grt~~ 155 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIP-VMGHIGLTPQSVNQLGGYKVQGKTEE 155 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCC-eeccccccceeeeccCCceeccCCHH
Confidence 6777777789999988553 1345667777788864 33 1111 124565
Q ss_pred -HHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCC
Q 007056 230 -RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 274 (620)
Q Consensus 230 -~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~ 274 (620)
.+.+++-++++.++||+.|.+.= .|. ++++.+.++++
T Consensus 156 ~a~~~i~ra~a~~~AGA~~i~lE~-----v~~---~~~~~i~~~v~ 193 (254)
T cd06557 156 EAERLLEDALALEEAGAFALVLEC-----VPA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCC
Confidence 57788888889999999999863 343 35566666653
No 260
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.99 E-value=17 Score=39.09 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEee---c-----CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHH
Q 007056 228 SDRKFLYEILGEVIKVGATTLNI---P-----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 299 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L---~-----DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA 299 (620)
.+.+...++++.+.++|++.|-| | +..|...+..+.++++.+++.++ +||.+-.=-+...-..-+.++
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~----iPV~vKl~p~~~~~~~~a~~l 186 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS----IPVAVKLSPYFSNLANMAKRL 186 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC----CcEEEEeCCCchhHHHHHHHH
Confidence 44566778999999999998877 3 33455555668899999998762 567766433333223334456
Q ss_pred HHhcCcEEeec
Q 007056 300 ACAGARQVEVT 310 (620)
Q Consensus 300 v~aGA~~Vd~T 310 (620)
.++|++.|..+
T Consensus 187 ~~~G~dgI~~~ 197 (334)
T PRK07565 187 DAAGADGLVLF 197 (334)
T ss_pred HHcCCCeEEEE
Confidence 67999998653
No 261
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=85.92 E-value=12 Score=39.47 Aligned_cols=205 Identities=19% Similarity=0.183 Sum_probs=118.8
Q ss_pred HHHHhHcCCCEEEEe---------cCCCC----hhHHHHHHHHHHHhcccccccCCccceEE----eecccchhhHHHHH
Q 007056 104 ARQLAKLGVDIIEAG---------FPAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 166 (620)
Q Consensus 104 a~~L~~~Gvd~IEvG---------fP~~s----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 166 (620)
++...++|++.|=.+ +|-.. .+-.+.+++|++... .|.++ ||+ +...+.+.+
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~---------iPviaD~d~GyG--~~~~v~~tv 94 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTD---------LPLLVDADTGFG--EAFNVARTV 94 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CHHHHHHHH
Confidence 455667788887664 34311 122456666666431 13332 233 355666777
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIK 242 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~ 242 (620)
+.+..+|+..|||-..+++-++-+.-+ .+.++.+++++.+++..+ +.+.+...=-|+ .....+..++-+++..+
T Consensus 95 ~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~~~~g~deAI~Ra~ay~~ 172 (285)
T TIGR02317 95 REMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVIIARTDARAVEGLDAAIERAKAYVE 172 (285)
T ss_pred HHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEEEEEcCcccccCHHHHHHHHHHHHH
Confidence 777788999999988776633322112 377888888776655433 233121111122 22347788888899999
Q ss_pred cCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCccc
Q 007056 243 VGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNAS 322 (620)
Q Consensus 243 aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~ 322 (620)
+|||.|.++ |...++++.++.+.+. .| +.+-+-..+..++ -+.-..-+.|++.|-....+ =|+-+..
T Consensus 173 AGAD~vfi~---g~~~~e~i~~~~~~i~--~P----l~~n~~~~~~~p~--~s~~eL~~lGv~~v~~~~~~--~~aa~~a 239 (285)
T TIGR02317 173 AGADMIFPE---ALTSLEEFRQFAKAVK--VP----LLANMTEFGKTPL--FTADELREAGYKMVIYPVTA--FRAMNKA 239 (285)
T ss_pred cCCCEEEeC---CCCCHHHHHHHHHhcC--CC----EEEEeccCCCCCC--CCHHHHHHcCCcEEEEchHH--HHHHHHH
Confidence 999999986 5667887776666542 22 2223332222111 12344556699998544333 3566777
Q ss_pred HHHHHHHHHhcc
Q 007056 323 LEEVVMAFKCRG 334 (620)
Q Consensus 323 lEevv~~L~~~~ 334 (620)
+.+.+..|...|
T Consensus 240 ~~~~~~~l~~~g 251 (285)
T TIGR02317 240 AEAVYNEIKEHG 251 (285)
T ss_pred HHHHHHHHHHcC
Confidence 777777777544
No 262
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=85.89 E-value=20 Score=38.55 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEec---------CCCChhHH----HHHHHHHHHhcccccccCCccceEEe-----e
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGF---------PAASKEDF----EAVRTIAKEVGNAVDAESGYVPVICG-----L 154 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf---------P~~s~~d~----e~v~~i~~~~~~~~~~~~~l~~~i~~-----~ 154 (620)
+.|.+.--...++.++++|||.|=+|. +...+-.+ .-++.+++-.++. ..++. +
T Consensus 37 ivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a--------~vVaDmPfgSY 108 (332)
T PLN02424 37 ITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRP--------LLVGDLPFGSY 108 (332)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCC--------EEEeCCCCCCC
Confidence 344444446679999999999999984 32222222 3334444322221 11111 2
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE----EcCC-----C-
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE-----D- 224 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~----f~~e-----d- 224 (620)
....+.-++.+.+.++++|++.|.+-... ....+.|+.+.+.|+. |. +.|. -
T Consensus 109 ~~s~e~av~nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~l~~~GIP-V~gHiGLtPQs~~~lGG 170 (332)
T PLN02424 109 ESSTDQAVESAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKAIVEAGIA-VMGHVGLTPQAISVLGG 170 (332)
T ss_pred CCCHHHHHHHHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHHHHHcCCC-EEEeecccceeehhhcC
Confidence 22233445556666788899999886542 1223566777788986 54 4443 1
Q ss_pred ---CCCCC--HHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhC
Q 007056 225 ---AGRSD--RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 225 ---~~r~d--~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~ 273 (620)
.+++. .+.+++-++++.++||..|.|. +.|.+ +.+.|.+.+
T Consensus 171 ykvqGr~~~~a~~li~dA~ale~AGAf~ivLE-----~Vp~~---la~~It~~l 216 (332)
T PLN02424 171 FRPQGRTAESAVKVVETALALQEAGCFAVVLE-----CVPAP---VAAAITSAL 216 (332)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEEc-----CCcHH---HHHHHHHhC
Confidence 12222 3467777888889999999987 56766 444455554
No 263
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=85.79 E-value=5.5 Score=42.93 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCC-ccccCHHHHHHHHHHHHHhCCCCCceeEEEec---------CCCcchHHHH
Q 007056 226 GRSDRKFLYEILGEVIKVGATTLNIPDT-VGITMPTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLSTAN 295 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I~L~DT-vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~---------HND~GlAvAN 295 (620)
++-++|.+.+.++.+.+.|+.+|.|.+- .-...++.+.++++.+++..|+ +.+|| |.+.|+-...
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~-----i~~~~~t~~ei~~~~~~~g~~~~e 142 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG-----MHIHAFSPMEVYYGARNSGLSVEE 142 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC-----ceEEecCHHHHHHHHHHcCCCHHH
Confidence 4568899999999999999999999832 2234566778999999988764 34444 6677876666
Q ss_pred HHHHH-HhcCcEEe
Q 007056 296 TIAGA-CAGARQVE 308 (620)
Q Consensus 296 slaAv-~aGA~~Vd 308 (620)
.+..+ +||++.+.
T Consensus 143 ~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 143 ALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHHHHhCccccc
Confidence 65554 45999886
No 264
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=85.76 E-value=23 Score=35.58 Aligned_cols=173 Identities=18% Similarity=0.231 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhHcCCCEEEEecC----CCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcC
Q 007056 97 SKEKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 172 (620)
Q Consensus 97 ~~~Kl~Ia~~L~~~Gvd~IEvGfP----~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 172 (620)
..+=+++++.|.+.|++.+-+--- ...+..++.++++.+... .|.+.+=+=...++++..++ .
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~---------~pv~~~GgI~~~e~~~~~~~----~ 94 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG---------IPVQVGGGIRSLEDIERLLD----L 94 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC---------CCEEEeCCcCCHHHHHHHHH----c
Confidence 346788999999999998888421 113345788888877531 12232222223455655554 4
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC--C------CCCC-CCHHHHHHHHHHHHHc
Q 007056 173 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E------DAGR-SDRKFLYEILGEVIKV 243 (620)
Q Consensus 173 g~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~--e------d~~r-~d~e~l~~~~~~~~~a 243 (620)
|++.|.+ .+..+ +..+.+.++++ ..|.+.+.++. . +... .......++++.+.+.
T Consensus 95 Gad~vvi--gs~~l-----------~dp~~~~~i~~---~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd04732 95 GVSRVII--GTAAV-----------KNPELVKELLK---EYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL 158 (234)
T ss_pred CCCEEEE--CchHH-----------hChHHHHHHHH---HcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc
Confidence 8887643 32211 11222333333 34432232221 0 0110 1122345778888899
Q ss_pred CCcEEeecCC--ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHH-HHHHHHhcCcEE
Q 007056 244 GATTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN-TIAGACAGARQV 307 (620)
Q Consensus 244 Ga~~I~L~DT--vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvAN-slaAv~aGA~~V 307 (620)
|++.|.+-|. .|.... .-.++++.+++..+ +|+-.-+ |....+ ...+.+.||+.|
T Consensus 159 ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~----ipvi~~G----Gi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 159 GVKAIIYTDISRDGTLSG-PNFELYKELAAATG----IPVIASG----GVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCCEEEEEeecCCCccCC-CCHHHHHHHHHhcC----CCEEEec----CCCCHHHHHHHHHCCCCEE
Confidence 9999888764 555444 22567777777653 3444322 222222 344555677765
No 265
>PRK10481 hypothetical protein; Provisional
Probab=85.67 E-value=8.6 Score=39.19 Aligned_cols=135 Identities=17% Similarity=0.173 Sum_probs=79.1
Q ss_pred EEeCCCcccCCCCCCCCCHHHHH----HHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEee
Q 007056 79 VFDTTLRDGEQSPGATLTSKEKL----DIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 154 (620)
Q Consensus 79 I~DtTLRDG~Qs~g~~fs~~~Kl----~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 154 (620)
.+=|=||||.|.- |+.+... ..+..|++-|++.|=+.--+.-|. +...+.+.- .|
T Consensus 57 ~lvtrL~dG~~v~---~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~-l~a~r~~l~------------~P----- 115 (224)
T PRK10481 57 VLVTRLNDGQQVH---VSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPS-LTARNAILL------------EP----- 115 (224)
T ss_pred eeEEEecCCCEEE---EEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCC-ccccCcccc------------Cc-----
Confidence 4456699999865 5544433 345677889999887742111111 111111100 01
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 234 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~ 234 (620)
...|...+.++. +..++.++.|.-+ .+.+..++-++.|++ +.|....-+..+++.+.
T Consensus 116 ----~~~i~~lv~Al~--~g~riGVitP~~~----------------qi~~~~~kw~~~G~~-v~~~~aspy~~~~~~l~ 172 (224)
T PRK10481 116 ----SRILPPLVAAIV--GGHQVGVIVPVEE----------------QLAQQAQKWQVLQKP-PVFALASPYHGSEEELI 172 (224)
T ss_pred ----hhhHHHHHHHhc--CCCeEEEEEeCHH----------------HHHHHHHHHHhcCCc-eeEeecCCCCCCHHHHH
Confidence 122333445554 3468888888532 223344555566886 66755433346778899
Q ss_pred HHHHHHHHcCCcEEeecCCccccC
Q 007056 235 EILGEVIKVGATTLNIPDTVGITM 258 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~~~ 258 (620)
+.++.+.+.|||.|.+ |-.|+.+
T Consensus 173 ~aa~~L~~~gaD~Ivl-~C~G~~~ 195 (224)
T PRK10481 173 DAGKELLDQGADVIVL-DCLGYHQ 195 (224)
T ss_pred HHHHHhhcCCCCEEEE-eCCCcCH
Confidence 9999998899998875 6677776
No 266
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=85.66 E-value=14 Score=37.51 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCHHHHHHHHHHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVI 241 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~ed~~r~d~e~l~~~~~~~~ 241 (620)
++.++....+|.+.|.+-.= .-..+.+.++++|++|++. +.++|+ |+.+.+..++..+
T Consensus 74 ~~~i~~fa~agad~It~H~E----------------~~~~~~r~i~~Ik~~G~kaGv~lnP~----Tp~~~i~~~l~~v- 132 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAE----------------ATEHIHRTIQLIKELGVKAGLVLNPA----TPLEALEPVLDDV- 132 (220)
T ss_pred HHHHHHHHHhCCCEEEEEec----------------cCcCHHHHHHHHHHcCCeEEEEECCC----CCHHHHHHHHhhC-
Confidence 44455555568888765332 2234557889999999863 778994 7888887777654
Q ss_pred HcCCcEEee----cCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 242 KVGATTLNI----PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 242 ~aGa~~I~L----~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
|.|.+ |.--|-.-=.++-+-|+.+|+.+++..++.|+ =|-|.-..|+-.+..|||+.+
T Consensus 133 ----D~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~Ie----VDGGI~~~t~~~~~~AGad~~ 194 (220)
T COG0036 133 ----DLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIE----VDGGINLETIKQLAAAGADVF 194 (220)
T ss_pred ----CEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEE----EeCCcCHHHHHHHHHcCCCEE
Confidence 33332 45566666667788888888887642134444 488999999999999999995
No 267
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=85.61 E-value=22 Score=37.13 Aligned_cols=80 Identities=13% Similarity=-0.083 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEE-e--e-cccchhhHHHHHHHHh
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-G--L-SRCNERDIKTAWEAVK 170 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~-~--~-~r~~~~dI~~a~eal~ 170 (620)
++.+-+....+...+.|++.|-+..|.+. .+.+....+..++. |+...++ . + .|...+.+....+.+.
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---~~~~~~~i~~ak~~-----G~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---VRNLEVAIKAVKKA-----GKHVEGAICYTGSPVHTLEYYVKLAKELE 159 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---HHHHHHHHHHHHHC-----CCeEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 44555677778888888888888777543 22222222221111 2211110 1 1 3445555555555555
Q ss_pred cCCCCEEEEEec
Q 007056 171 YAKRPRIHTFIA 182 (620)
Q Consensus 171 ~ag~~~v~i~~~ 182 (620)
.+|+++|.+...
T Consensus 160 ~~Ga~~i~l~DT 171 (275)
T cd07937 160 DMGADSICIKDM 171 (275)
T ss_pred HcCCCEEEEcCC
Confidence 667776665443
No 268
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=85.58 E-value=21 Score=36.76 Aligned_cols=175 Identities=21% Similarity=0.251 Sum_probs=104.3
Q ss_pred HHHHhHcCCCEEEEec---------CCC---ChhH-HHHHHHHHHHhcccccccCCccceEEe----ecccchhhHHHHH
Q 007056 104 ARQLAKLGVDIIEAGF---------PAA---SKED-FEAVRTIAKEVGNAVDAESGYVPVICG----LSRCNERDIKTAW 166 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGf---------P~~---s~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~----~~r~~~~dI~~a~ 166 (620)
++.+.++|++.|=.+. |-. +.+| .+.+++|+.... .|.++- |+. ....+.+.+
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~---------iPv~vD~d~GyG~-~~~~v~~tv 91 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVS---------IPVIVDADTGYGN-DPENVARTV 91 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSS---------SEEEEE-TTTSSS-SHHHHHHHH
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhc---------CcEEEEcccccCc-hhHHHHHHH
Confidence 5667788999887742 321 1122 466777776532 133332 221 256777788
Q ss_pred HHHhcCCCCEEEEEec-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC---CCCHHHHHHHHHHHHH
Q 007056 167 EAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG---RSDRKFLYEILGEVIK 242 (620)
Q Consensus 167 eal~~ag~~~v~i~~~-~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~---r~d~e~l~~~~~~~~~ 242 (620)
+.+..+|+..|+|-.. .. |-...+ .+.+|..++++.+++-.++.++- |.--. |+. ....+..++-+++..+
T Consensus 92 ~~~~~aG~agi~IEDq~~~--~~~~~l-~~~ee~~~kI~Aa~~a~~~~~~~-I~ART-Da~~~~~~~~deaI~R~~aY~e 166 (238)
T PF13714_consen 92 RELERAGAAGINIEDQRCG--HGGKQL-VSPEEMVAKIRAAVDARRDPDFV-IIART-DAFLRAEEGLDEAIERAKAYAE 166 (238)
T ss_dssp HHHHHCT-SEEEEESBSTT--TSTT-B---HHHHHHHHHHHHHHHSSTTSE-EEEEE-CHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEeeccccC--CCCCce-eCHHHHHHHHHHHHHhccCCeEE-EEEec-cccccCCCCHHHHHHHHHHHHH
Confidence 8888899999999877 22 311122 38999999999888888877742 22111 221 2344777788888899
Q ss_pred cCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 243 VGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 243 aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
+|||.|.++ |...++++.++.+.+. .|+-+..+. +. -+.-.--+.|+++|-
T Consensus 167 AGAD~ifi~---~~~~~~~i~~~~~~~~--------~Pl~v~~~~--~~--~~~~eL~~lGv~~v~ 217 (238)
T PF13714_consen 167 AGADMIFIP---GLQSEEEIERIVKAVD--------GPLNVNPGP--GT--LSAEELAELGVKRVS 217 (238)
T ss_dssp TT-SEEEET---TSSSHHHHHHHHHHHS--------SEEEEETTS--SS--S-HHHHHHTTESEEE
T ss_pred cCCCEEEeC---CCCCHHHHHHHHHhcC--------CCEEEEcCC--CC--CCHHHHHHCCCcEEE
Confidence 999999865 4577777777766662 346666642 22 444555566877774
No 269
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=85.35 E-value=6.7 Score=41.61 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=74.2
Q ss_pred cCCCC-CCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEE-ecCCCcchHHHH
Q 007056 221 SPEDA-GRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVIST-HCQNDLGLSTAN 295 (620)
Q Consensus 221 ~~ed~-~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~-H~HND~GlAvAN 295 (620)
.|-+. +..|.+-+.++++.+++.|++.|.++=|+| .++++|-.++++..++...+ ++|+-. .+.|+.--+++.
T Consensus 14 TPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g--rvpviaG~g~~~t~eai~l 91 (299)
T COG0329 14 TPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG--RVPVIAGVGSNSTAEAIEL 91 (299)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC--CCcEEEecCCCcHHHHHHH
Confidence 44432 679999999999999999999999999999 46899999999999998765 354444 578999999999
Q ss_pred HHHHHHhcCcEEee
Q 007056 296 TIAGACAGARQVEV 309 (620)
Q Consensus 296 slaAv~aGA~~Vd~ 309 (620)
+..|-+.||+.+=.
T Consensus 92 ak~a~~~Gad~il~ 105 (299)
T COG0329 92 AKHAEKLGADGILV 105 (299)
T ss_pred HHHHHhcCCCEEEE
Confidence 99999999998744
No 270
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=85.29 E-value=49 Score=35.38 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHHhH-cCCCEEEE--ecCCCC-hhH-HHHHHHHHHHhcccccccCCccceEEeeccc---chhhH-H
Q 007056 93 ATLTSKEKLDIARQLAK-LGVDIIEA--GFPAAS-KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC---NERDI-K 163 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~-~Gvd~IEv--GfP~~s-~~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~---~~~dI-~ 163 (620)
..++.++-.++++.|.+ .||..|-+ |-|-.. ..+ .+.++.+.+. + .+..+.-.+|. +...+ +
T Consensus 117 ~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i-~--------~v~~iri~Tr~~v~~p~rit~ 187 (321)
T TIGR03822 117 GVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAI-D--------HVKIVRFHTRVPVADPARVTP 187 (321)
T ss_pred CcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhC-C--------CccEEEEeCCCcccChhhcCH
Confidence 45688888889998875 48886655 557643 333 2445555442 1 11112222232 11111 2
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc--CCCCCCCCHHHHHHHHHHHH
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS--PEDAGRSDRKFLYEILGEVI 241 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~--~ed~~r~d~e~l~~~~~~~~ 241 (620)
..++.++.+|.. +. +++.-.| ..|..+.+.++++.+++.|+. +... .-.+--.+.+.+.++++.+.
T Consensus 188 ell~~L~~~g~~-v~--i~l~~~h--------~~el~~~~~~ai~~L~~~Gi~-v~~q~vLl~gvNd~~~~l~~l~~~l~ 255 (321)
T TIGR03822 188 ALIAALKTSGKT-VY--VALHANH--------ARELTAEARAACARLIDAGIP-MVSQSVLLRGVNDDPETLAALMRAFV 255 (321)
T ss_pred HHHHHHHHcCCc-EE--EEecCCC--------hhhcCHHHHHHHHHHHHcCCE-EEEEeeEeCCCCCCHHHHHHHHHHHH
Confidence 334556666743 33 3332223 234457888999999999985 4332 11223467888999999999
Q ss_pred HcCCc--EEeecCCccc-----cCHHHHHHHHHHHHHhCCCC
Q 007056 242 KVGAT--TLNIPDTVGI-----TMPTEFGKLIADIKANTPGI 276 (620)
Q Consensus 242 ~aGa~--~I~L~DTvG~-----~~P~~v~~li~~l~~~~~~~ 276 (620)
+.|+. .+..+|-++. ..+++..+++..+++.+++.
T Consensus 256 ~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~ 297 (321)
T TIGR03822 256 ECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGL 297 (321)
T ss_pred hcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCC
Confidence 99986 4566788744 46778899999999998874
No 271
>PRK06801 hypothetical protein; Provisional
Probab=85.28 E-value=18 Score=38.31 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE-EeecC-CccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPD-TVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~-I~L~D-TvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|+. .+.+.+..+++++.+.++.. |.+.. +..+..++.+..++..+.++. ++|
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~-----~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~----~vp 76 (286)
T PRK06801 6 LANGLAHARKHGYALGAFNV-----LDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARH----DIP 76 (286)
T ss_pred HHHHHHHHHHCCceEEEEee-----CCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHC----CCC
Confidence 56778889999885446766 58899999999999998654 44443 334456677888998888876 377
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
+.+|. |-|.-..-...|+++|++.|..
T Consensus 77 V~lHl--DH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 77 VVLNL--DHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred EEEEC--CCCCCHHHHHHHHHhCCcEEEE
Confidence 88765 5566678899999999998644
No 272
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=85.27 E-value=25 Score=38.05 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=79.9
Q ss_pred CCCEEEEe--cCCC-ChhHHHH-HHHHHHHhcccccccCCccceEEeecccchhhH-HHHHHHHhcCCCCEEEEEecCCH
Q 007056 111 GVDIIEAG--FPAA-SKEDFEA-VRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATSG 185 (620)
Q Consensus 111 Gvd~IEvG--fP~~-s~~d~e~-v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~eal~~ag~~~v~i~~~~Sd 185 (620)
+++.|-+| -|.. +++..+. +..|.+.+. .+ ..+..-+ ++..+ +.-++.++.+|+.+|.+-+=+.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~----~~----~eitiE~--nP~~~~~e~l~~l~~~GvnRiSiGvQS~~ 120 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLS----KD----CEITTEA--NPNSATKAWLKGMKNLGVNRISFGVQSFN 120 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcC----CC----ceEEEEe--CCCCCCHHHHHHHHHcCCCEEEEecccCC
Confidence 67888775 5753 4444433 333333211 11 2333333 34444 23356778889999998665555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCCcEEeec
Q 007056 186 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 186 ~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
-.....+|+. ...+.+.++++.+++.|+..|..+...+ ..-+.+.+.+.++.+.+.|++.|.+-
T Consensus 121 ~~~L~~lgR~--~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y 185 (350)
T PRK08446 121 EDKLKFLGRI--HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAY 185 (350)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence 4666667763 2245677889999999986454444332 23567888899999999999988753
No 273
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=85.27 E-value=18 Score=39.54 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=79.9
Q ss_pred HHhcCCCCEEEEEecC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC--EEEEcCCC-----CCCCC
Q 007056 168 AVKYAKRPRIHTFIAT----------SGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCD--DVEFSPED-----AGRSD 229 (620)
Q Consensus 168 al~~ag~~~v~i~~~~----------Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~--~V~f~~ed-----~~r~d 229 (620)
..+.+|.|.|.|-.+- .-.|+...+|=|.|+=.+-+.+.++..|+. |-. -+.+++++ ..-.+
T Consensus 167 rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~ 246 (362)
T PRK10605 167 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN 246 (362)
T ss_pred HHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence 3456899998775332 222334456667887778788888877764 211 25667753 11245
Q ss_pred HHH-HHHHHHHHHHcCCcEEeecCC--ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhc-Cc
Q 007056 230 RKF-LYEILGEVIKVGATTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG-AR 305 (620)
Q Consensus 230 ~e~-l~~~~~~~~~aGa~~I~L~DT--vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG-A~ 305 (620)
++. ..++++.+.+.|+|.|.+..- .+ ..|. ...+.+.+++.++ ++|..-.-++ ...+..+++.| ||
T Consensus 247 ~~e~~~~~~~~L~~~giD~i~vs~~~~~~-~~~~-~~~~~~~ik~~~~----~pv~~~G~~~----~~~ae~~i~~G~~D 316 (362)
T PRK10605 247 EEADALYLIEQLGKRGIAYLHMSEPDWAG-GEPY-SDAFREKVRARFH----GVIIGAGAYT----AEKAETLIGKGLID 316 (362)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccccccC-Cccc-cHHHHHHHHHHCC----CCEEEeCCCC----HHHHHHHHHcCCCC
Confidence 566 689999999999999888642 11 0111 2234566777774 3444444333 57788899888 66
Q ss_pred EE
Q 007056 306 QV 307 (620)
Q Consensus 306 ~V 307 (620)
.|
T Consensus 317 ~V 318 (362)
T PRK10605 317 AV 318 (362)
T ss_pred EE
Confidence 55
No 274
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=85.17 E-value=51 Score=34.24 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEE---eec-----ccchhhHHHHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC---GLS-----RCNERDIKTAW 166 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~---~~~-----r~~~~dI~~a~ 166 (620)
.+.++-.++.+...+.|++-+-+- |. +++...+.+.. +.++...+. .+. +.....++.++
T Consensus 36 ~~~~d~~~~~~~a~~~~~~av~v~-~~-------~~~~~~~~~~~----~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~ 103 (267)
T PRK07226 36 DGLVDIRDTVNKVAEGGADAVLMH-KG-------LARHGHRGYGR----DVGLIVHLSASTSLSPDPNDKVLVGTVEEAI 103 (267)
T ss_pred cCcCCHHHHHHHHHhcCCCEEEeC-Hh-------HHhhhccccCC----CCcEEEEEcCCCCCCCCCCcceeeecHHHHH
Confidence 477788889999999999998882 32 22222211110 112222222 121 11122344444
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc-------CCCCCCCCHHHHHHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS-------PEDAGRSDRKFLYEILGE 239 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~-------~ed~~r~d~e~l~~~~~~ 239 (620)
+ .|++.|.+....... ..++.++.+.+.++.+++.|.. +... .|+. .+++.+...++.
T Consensus 104 ~----~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~p-l~vi~~~~g~~~e~~--~~~~~i~~a~~~ 168 (267)
T PRK07226 104 K----LGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMP-LLAMMYPRGPGIKNE--YDPEVVAHAARV 168 (267)
T ss_pred H----cCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCc-EEEEEecCCCccCCC--ccHHHHHHHHHH
Confidence 4 488887776554321 1356788899999999999976 3221 1222 366788888899
Q ss_pred HHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCC--CcchHHHHHHHHHHhcCcEEeeccccccCC
Q 007056 240 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQN--DLGLSTANTIAGACAGARQVEVTINGIGER 317 (620)
Q Consensus 240 ~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN--D~GlAvANslaAv~aGA~~Vd~Ti~GlGER 317 (620)
+.++|||.|-..=+ | .+ ++++.+.+..+ .+=+.+| +-+ |+-.+.++...++++||+.+-..-+=+.
T Consensus 169 a~e~GAD~vKt~~~-~--~~----~~l~~~~~~~~-ipV~a~G--Gi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~-- 236 (267)
T PRK07226 169 AAELGADIVKTNYT-G--DP----ESFREVVEGCP-VPVVIAG--GPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ-- 236 (267)
T ss_pred HHHHCCCEEeeCCC-C--CH----HHHHHHHHhCC-CCEEEEe--CCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc--
Confidence 99999999976521 1 23 33444443221 1112222 333 5667899999999999995433222221
Q ss_pred cCcccHHHHHHHHHh
Q 007056 318 AGNASLEEVVMAFKC 332 (620)
Q Consensus 318 aGNa~lEevv~~L~~ 332 (620)
..+.++.+..|..
T Consensus 237 --~~~p~~~~~~l~~ 249 (267)
T PRK07226 237 --HEDPEAITRAISA 249 (267)
T ss_pred --CCCHHHHHHHHHH
Confidence 1235555555554
No 275
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=85.15 E-value=13 Score=38.80 Aligned_cols=139 Identities=20% Similarity=0.244 Sum_probs=81.3
Q ss_pred HHHHHHHhHcCCCEEEEec---------CCCCh----hHHHHHHHHHHHhcccccccCCccceEEee--cc--cchhh-H
Q 007056 101 LDIARQLAKLGVDIIEAGF---------PAASK----EDFEAVRTIAKEVGNAVDAESGYVPVICGL--SR--CNERD-I 162 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGf---------P~~s~----~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~--~r--~~~~d-I 162 (620)
-.-++.++++|||.|=+|+ |...+ +....++.+++..+.. +.++.+ +- ...++ +
T Consensus 25 ~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p--------~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 25 YPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRA--------LVVADMPFGSYQASPEQAL 96 (264)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCC--------cEEEeCCCCCccCCHHHHH
Confidence 3457888999999998873 32211 1234455555532211 122222 21 12233 5
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE----EcCC---------CCCCCC
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE---------DAGRSD 229 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~----f~~e---------d~~r~d 229 (620)
+.+.+.++++|+..|++-.. ....+.|+.+.+.|+. |. +.|. -.+|++
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIp-V~gHiGL~pq~~~~~gg~~i~grt~ 157 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIP-VMGHLGLTPQSVNVLGGYKVQGRDE 157 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCC-EeeeecccceeecccCCeeeecCCH
Confidence 66777777789999988553 1234556677778875 43 2221 124554
Q ss_pred --HHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCC
Q 007056 230 --RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 274 (620)
Q Consensus 230 --~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~ 274 (620)
.+.+++-++++.++||+.|.|.= .|.+ +++.+.++++
T Consensus 158 ~~a~~~i~ra~a~~eAGA~~i~lE~-----v~~~---~~~~i~~~l~ 196 (264)
T PRK00311 158 EAAEKLLEDAKALEEAGAFALVLEC-----VPAE---LAKEITEALS 196 (264)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcC-----CCHH---HHHHHHHhCC
Confidence 46778888889999999999862 2543 4555555553
No 276
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=85.07 E-value=22 Score=37.17 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=82.3
Q ss_pred HHHHHHHhHcCCCEEEEec---------CCCCh----hHHHHHHHHHHHhccccc-ccCCccceEEeecccchhhHHHHH
Q 007056 101 LDIARQLAKLGVDIIEAGF---------PAASK----EDFEAVRTIAKEVGNAVD-AESGYVPVICGLSRCNERDIKTAW 166 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGf---------P~~s~----~d~e~v~~i~~~~~~~~~-~~~~l~~~i~~~~r~~~~dI~~a~ 166 (620)
--.|+.++++|||.|=+|. |...+ +.....+.+++-.++.+. .| .| +.++. ..+.-++.+.
T Consensus 25 ~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~D---mP-f~sy~-~~e~a~~na~ 99 (263)
T TIGR00222 25 YSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTD---LP-FMSYA-TPEQALKNAA 99 (263)
T ss_pred HHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeC---CC-cCCCC-CHHHHHHHHH
Confidence 4568899999999999984 22111 123445555553322210 00 01 12332 1334455566
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE----EcCC----CC-----CCCC--HH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE----DA-----GRSD--RK 231 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~----f~~e----d~-----~r~d--~e 231 (620)
+.++++|++.|++-.. ..+.+.++.+.+.|+. |. +.|. ++ +|++ .+
T Consensus 100 rl~~eaGa~aVkiEgg------------------~~~~~~i~~l~~~gIp-V~gHiGltPq~a~~~ggy~~qgrt~~~a~ 160 (263)
T TIGR00222 100 RVMQETGANAVKLEGG------------------EWLVETVQMLTERGVP-VVGHLGLTPQSVNILGGYKVQGKDEEAAK 160 (263)
T ss_pred HHHHHhCCeEEEEcCc------------------HhHHHHHHHHHHCCCC-EEEecCCCceeEeecCCeeecCCCHHHHH
Confidence 7777789999988653 2234566888888876 43 1111 11 3342 35
Q ss_pred HHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCC
Q 007056 232 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 274 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~ 274 (620)
.+++-++++.++||+.|.|. +.|. ++.+.+.++++
T Consensus 161 ~~i~~A~a~e~AGA~~ivlE-----~vp~---~~a~~It~~l~ 195 (263)
T TIGR00222 161 KLLEDALALEEAGAQLLVLE-----CVPV---ELAAKITEALA 195 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEc-----CCcH---HHHHHHHHhCC
Confidence 77778888899999999987 4453 45555556553
No 277
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=85.02 E-value=15 Score=38.43 Aligned_cols=43 Identities=12% Similarity=-0.032 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCcEEee-cCCccccCHHHHHHHHHHHHHh
Q 007056 230 RKFLYEILGEVIKVGATTLNI-PDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L-~DTvG~~~P~~v~~li~~l~~~ 272 (620)
.+...+.++.+.++|+|.+.+ +=.....+++++.+.++.+.+.
T Consensus 82 ~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 82 TAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEA 125 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 344445555555555544333 1112222344444444444443
No 278
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=84.80 E-value=30 Score=39.28 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHH-hHcCCCEEEEe--cCCCChhHH-HHHHHHHHHhcccccccCCccceEEeecccch--hhHHHHHH
Q 007056 94 TLTSKEKLDIARQL-AKLGVDIIEAG--FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNE--RDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L-~~~Gvd~IEvG--fP~~s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~--~dI~~a~e 167 (620)
..+++..++=++.| .+.|+..|... .|..+++.+ +.++.|.+.. . +.....+.+|... .| +.-++
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~--~------l~i~w~~~~r~~~i~~d-~ell~ 291 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARN--P------ISVTWGINTRVTDIVRD-ADILH 291 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcC--C------CCeEEEEecccccccCC-HHHHH
Confidence 34666666655555 45899988764 233344322 3444444321 0 1123334444321 12 23456
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCCc
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa~ 246 (620)
.++.+|..+|.+-+=+.+-.+...++|.. ..+.+.++++.++++|+. +..+..-+ -..+.+.+.+.++.+.+.+++
T Consensus 292 ~l~~aG~~~v~iGiES~~~~~L~~~~K~~--t~~~~~~ai~~l~~~Gi~-~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 292 LYRRAGLVHISLGTEAAAQATLDHFRKGT--TTSTNKEAIRLLRQHNIL-SEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHHHhCCcEEEEccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCc-EEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 67778998887744333333444566542 345677899999999985 33322211 134678888999999999988
Q ss_pred EEeecCCccccCHHHHHHHHHHHHHh
Q 007056 247 TLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 247 ~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
.+.+ ..++|..-..+.+.+++.
T Consensus 369 ~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 369 QANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred ceEE----EEecCCCCcHHHHHHHhh
Confidence 8765 467887767777777664
No 279
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=84.60 E-value=15 Score=39.96 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHc
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 243 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~a 243 (620)
-++.++.+|+.+|.+-+-+-+-.....+|+.. ..+.+.++++.+++.|++.|.++...+ ...+.+.+.+.++.+.+.
T Consensus 101 ~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l 178 (374)
T PRK05799 101 KLKILKSMGVNRLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVEL 178 (374)
T ss_pred HHHHHHHcCCCEEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhc
Confidence 35667778999998876665555666677632 245677889999999975454443322 145678888999999999
Q ss_pred CCcEEee
Q 007056 244 GATTLNI 250 (620)
Q Consensus 244 Ga~~I~L 250 (620)
|++.|.+
T Consensus 179 ~~~~is~ 185 (374)
T PRK05799 179 NPEHISC 185 (374)
T ss_pred CCCEEEE
Confidence 9988765
No 280
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=84.40 E-value=43 Score=37.03 Aligned_cols=147 Identities=7% Similarity=-0.008 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHhHc-CCCEEEEec----CCCChhHH--HHHHHHHHHhcccccccCCccceEEeecccchhhHHHH
Q 007056 93 ATLTSKEKLDIARQLAKL-GVDIIEAGF----PAASKEDF--EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 165 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~-Gvd~IEvGf----P~~s~~d~--e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 165 (620)
..|+.+.-.++++.+.+. |++.+.+.| |--.+.++ +.++.+.+.... . ++...|..-+-... +..
T Consensus 46 ~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~----~-~i~~~i~TNG~ll~---~e~ 117 (412)
T PRK13745 46 HVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARG----R-QIDNCIQTNGTLLT---DEW 117 (412)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCC----C-ceEEEEeecCEeCC---HHH
Confidence 358999988888887764 778877754 65555432 222222221110 0 11112222111111 223
Q ss_pred HHHHhcCCCCEEEEEecCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC
Q 007056 166 WEAVKYAKRPRIHTFIATS-GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~S-d~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG 244 (620)
.+.++..+. .|.+.+-.. ++|-.......-....+.+.+.++.+++.|+. +.... -.++.+.+++.++++.+.+.|
T Consensus 118 ~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~-~~i~~-vv~~~n~~~~~e~~~~~~~lg 194 (412)
T PRK13745 118 CEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVE-WNAMA-VVNDFNADYPLDFYHFFKELD 194 (412)
T ss_pred HHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCC-EEEEE-EEcCCccccHHHHHHHHHHcC
Confidence 345555665 666654333 45544332111124577888888999999875 33322 234566677788888889999
Q ss_pred CcEEee
Q 007056 245 ATTLNI 250 (620)
Q Consensus 245 a~~I~L 250 (620)
++.+.+
T Consensus 195 ~~~~~~ 200 (412)
T PRK13745 195 CHYIQF 200 (412)
T ss_pred CCeEEE
Confidence 987765
No 281
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=84.21 E-value=12 Score=39.20 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC-C--cEEeecCCccccCHHH------HHHHHHHHHHhC
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-A--TTLNIPDTVGITMPTE------FGKLIADIKANT 273 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG-a--~~I~L~DTvG~~~P~~------v~~li~~l~~~~ 273 (620)
..++++.++.. .+.+. .+|-+.-.+..+.+.++..| + .++.|.|++-. ..+. +..-++.+|+.+
T Consensus 107 t~~~v~~a~~~---~~~i~---~TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vli-kdnHi~~~g~i~~~v~~~r~~~ 179 (268)
T cd01572 107 TRRYVEALAGT---KARIL---DTRKTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLI-KDNHIAAAGSITEAVRRARAAA 179 (268)
T ss_pred HHHHHHHhCCC---CEEEE---eCCCCChhhHHHHHHHHHhCCCccccCCCcceeee-ehHHHHHhCCHHHHHHHHHHhC
Confidence 34555555542 24332 23555555777777777664 3 58888887733 3332 345678888888
Q ss_pred CCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHH
Q 007056 274 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMA 353 (620)
Q Consensus 274 ~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~ 353 (620)
|. ..+|++=||| ..-+..|+++|||+|-. ||...|++-...........--..-||+++.+.++
T Consensus 180 ~~--~~~Igvev~s-----~eea~~A~~~gaDyI~l---------d~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~ 243 (268)
T cd01572 180 PF--TLKIEVEVET-----LEQLKEALEAGADIIML---------DNMSPEELREAVALLKGRVLLEASGGITLENIRAY 243 (268)
T ss_pred CC--CCeEEEEECC-----HHHHHHHHHcCCCEEEE---------CCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHH
Confidence 74 3567888887 56778889999999865 67788888777765321000112347888887766
Q ss_pred HH
Q 007056 354 SK 355 (620)
Q Consensus 354 s~ 355 (620)
++
T Consensus 244 a~ 245 (268)
T cd01572 244 AE 245 (268)
T ss_pred HH
Confidence 63
No 282
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.12 E-value=19 Score=39.05 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=78.5
Q ss_pred HHhcCCCCEEEEEec--------CCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-C----CC---EEEEcCCC--CCC
Q 007056 168 AVKYAKRPRIHTFIA--------TSG--IHMEHKLRKTKQQVVEIARSMVKFARSL-G----CD---DVEFSPED--AGR 227 (620)
Q Consensus 168 al~~ag~~~v~i~~~--------~Sd--~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G----~~---~V~f~~ed--~~r 227 (620)
..+.+|.+.|.+-.+ .|+ .++..++|=+.+.-.+.+.+.++..|+. | .+ .+.++++| .+-
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g 231 (353)
T cd04735 152 RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPG 231 (353)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCC
Confidence 345689999877543 233 2334456777887788888888877764 4 22 24557653 223
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCC----ccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhc
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 303 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DT----vG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 303 (620)
.+++...++++.+.++|+|.|.+.-. .....|..-....+.+++.+.. +++|-..+--. -...+..+++.|
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~--~iPVi~~Ggi~---t~e~ae~~l~~g 306 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAG--RLPLIAVGSIN---TPDDALEALETG 306 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCC--CCCEEEECCCC---CHHHHHHHHHcC
Confidence 45677889999999999999987421 1111111123445556665521 24454433211 144566677777
Q ss_pred CcEE
Q 007056 304 ARQV 307 (620)
Q Consensus 304 A~~V 307 (620)
|+.|
T Consensus 307 aD~V 310 (353)
T cd04735 307 ADLV 310 (353)
T ss_pred CChH
Confidence 6654
No 283
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=84.09 E-value=4.5 Score=44.97 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHhHcCCC-EEE---Ee--cCCC-ChhHHHHH-HHHHHHhcccccccCCccceEEeecccchhhHHHH-
Q 007056 95 LTSKEKLDIARQLAKLGVD-IIE---AG--FPAA-SKEDFEAV-RTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA- 165 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd-~IE---vG--fP~~-s~~d~e~v-~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a- 165 (620)
+...-..+|.......|.+ .|. .| -|.. ++++.+.+ ..|.+... ...++ ..|.. -+++.+++..
T Consensus 67 Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~-~~~~~----~Eiti--E~nP~~~~~e~ 139 (416)
T COG0635 67 YLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFN-DLDPD----AEITI--EANPGTVEAEK 139 (416)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcc-cCCCC----ceEEE--EeCCCCCCHHH
Confidence 3334444555555555553 333 33 4653 45555433 34444331 11111 23322 2355554432
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCC-CCHHHHHHHHHHHHHcC
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYEILGEVIKVG 244 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r-~d~e~l~~~~~~~~~aG 244 (620)
+++++.+|+.||.+.+-+-+--+.+.+|+... -+.+.++++.+++.|+..|.++...+-. -+.+.+.+-++.+++++
T Consensus 140 ~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~--~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~ 217 (416)
T COG0635 140 FKALKEAGVNRISLGVQSFNDEVLKALGRIHD--EEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELG 217 (416)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHHhcCCCC--HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 56778889999999988888888888888644 3667789999999998877776665443 35688889999999999
Q ss_pred CcEEee
Q 007056 245 ATTLNI 250 (620)
Q Consensus 245 a~~I~L 250 (620)
+++|.+
T Consensus 218 pdhis~ 223 (416)
T COG0635 218 PDHLSL 223 (416)
T ss_pred CCEEEE
Confidence 998875
No 284
>PLN02858 fructose-bisphosphate aldolase
Probab=83.94 E-value=73 Score=40.99 Aligned_cols=194 Identities=17% Similarity=0.160 Sum_probs=126.2
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhHH-HHHHHHHHHhcccccccCCccceEEeeccc-
Q 007056 85 RDGEQSPGA--TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRC- 157 (620)
Q Consensus 85 RDG~Qs~g~--~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~- 157 (620)
+.+.++-+. .++.+.-..+++.-.+.+.+.|=--+|... +.++ ..++.+++.. -+|...-|--+
T Consensus 1110 ~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpV~lHLDHg~ 1180 (1378)
T PLN02858 1110 EKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQA---------SVPITVHFDHGT 1180 (1378)
T ss_pred HHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHC---------CCCEEEECCCCC
Confidence 445555543 578999999999999999998866566432 2221 2233344321 13544444444
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCC------
Q 007056 158 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------ 225 (620)
Q Consensus 158 ~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~------ 225 (620)
..++|.+|+++ |...|.+=.| ..+.|||++..++.+++|+..|+. |+- +.||.
T Consensus 1181 ~~~~i~~ai~~----Gf~SVM~DgS----------~l~~eeNi~~t~~vv~~Ah~~gv~-VEaElG~v~g~e~~~~~~~~ 1245 (1378)
T PLN02858 1181 SKHELLEALEL----GFDSVMVDGS----------HLSFTENISYTKSISSLAHSKGLM-VEAELGRLSGTEDGLTVEEY 1245 (1378)
T ss_pred CHHHHHHHHHh----CCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEecccCCccCCcccccc
Confidence 35667777765 8888754332 247799999999999999999974 432 23332
Q ss_pred --CCCCHHHHHHHHHHHHHcCCcEEeec--CCcccc---CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHH
Q 007056 226 --GRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 298 (620)
Q Consensus 226 --~r~d~e~l~~~~~~~~~aGa~~I~L~--DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 298 (620)
..++|+...++++ +-|+|.+-++ -.=|.. .|.-=.++++.|++.++.. ++||.+|.= .|..-.+-..
T Consensus 1246 ~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~-~vpLVlHGg--SG~~~~~~~~ 1319 (1378)
T PLN02858 1246 EAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKK-GVLLVLHGA--SGLPESLIKE 1319 (1378)
T ss_pred ccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCC-CCcEEEeCC--CCCCHHHHHH
Confidence 2678888877766 4588865554 233332 2444456888888887421 378887764 5566788899
Q ss_pred HHHhcCcEEe
Q 007056 299 GACAGARQVE 308 (620)
Q Consensus 299 Av~aGA~~Vd 308 (620)
|+..|+.-|+
T Consensus 1320 ai~~Gi~KiN 1329 (1378)
T PLN02858 1320 CIENGVRKFN 1329 (1378)
T ss_pred HHHcCCeEEE
Confidence 9999998873
No 285
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=83.91 E-value=18 Score=37.35 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=107.8
Q ss_pred eEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEe---
Q 007056 77 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG--- 153 (620)
Q Consensus 77 V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~--- 153 (620)
+--+|-||=.|. ..+.++-.++.+...+.|++.+-+ .|.. ++........ +.+++..+-+
T Consensus 20 ~~aiDh~~l~gp-----~~~~~~~~~~~~~a~~~~~~~v~~-~p~~-------~~~~~~~~~~----~~~~~~~~~~~~~ 82 (258)
T TIGR01949 20 IVPMDHGVSNGP-----IKGLVDIRKTVNEVAEGGADAVLL-HKGI-------VRRGHRGYGK----DVGLIIHLSASTS 82 (258)
T ss_pred EEECCCccccCC-----CCCcCCHHHHHHHHHhcCCCEEEe-Ccch-------hhhcccccCC----CCcEEEEEcCCCC
Confidence 334577766553 346778888999999999999988 3432 2211111100 1012111100
Q ss_pred ecccc-----hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-C---
Q 007056 154 LSRCN-----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-D--- 224 (620)
Q Consensus 154 ~~r~~-----~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-d--- 224 (620)
+++.. ...++.++ ..|++.|.+.....+ .+..+.++.+.++.+.+++.|.. +....+ +
T Consensus 83 ~g~~~~~~~~~~~v~~al----~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~-liv~~~~~Gvh 149 (258)
T TIGR01949 83 LSPDPNDKRIVTTVEDAI----RMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVP-LLAMMYPRGPH 149 (258)
T ss_pred CCCCCCcceeeeeHHHHH----HCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCC-EEEEEeccCcc
Confidence 11111 11234444 358888888765321 12346678888999999999875 222111 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCC--CcchHHHHHHHHHHh
Q 007056 225 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQN--DLGLSTANTIAGACA 302 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN--D~GlAvANslaAv~a 302 (620)
....+.+.+.+.++.+.++|||.|... +. ..++.+. .+.+..+ .+ +.. .=.-+ ++..++.|.-.++++
T Consensus 150 ~~~~~~~~~~~~~~~a~~~GADyikt~-~~--~~~~~l~----~~~~~~~-iP-Vva-~GGi~~~~~~~~~~~i~~~~~a 219 (258)
T TIGR01949 150 IDDRDPELVAHAARLGAELGADIVKTP-YT--GDIDSFR----DVVKGCP-AP-VVV-AGGPKTNSDREFLQMIKDAMEA 219 (258)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEecc-CC--CCHHHHH----HHHHhCC-Cc-EEE-ecCCCCCCHHHHHHHHHHHHHc
Confidence 122445667676788889999999975 21 2334343 3333222 11 222 12333 678889999999999
Q ss_pred cCcEEe
Q 007056 303 GARQVE 308 (620)
Q Consensus 303 GA~~Vd 308 (620)
||+.+-
T Consensus 220 Ga~Gia 225 (258)
T TIGR01949 220 GAAGVA 225 (258)
T ss_pred CCcEEe
Confidence 999653
No 286
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=83.75 E-value=3.4 Score=43.28 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccc
Q 007056 234 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 313 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~G 313 (620)
..=++.+.++|+|.| |-.....| ..+++..+|.++ + +++-.-|-+ +..++.|++.||+.|-+|+.|
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~---~l~MAD~st-----leEal~a~~~Gad~I~TTl~g 142 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-K---VPFVCGARN-----LGEALRRISEGAAMIRTKGEA 142 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-C---CcEEccCCC-----HHHHHHHHHCCCCEEEecCCC
Confidence 345677889999999 87777888 688999999887 3 445444443 788999999999999999986
Q ss_pred c
Q 007056 314 I 314 (620)
Q Consensus 314 l 314 (620)
.
T Consensus 143 y 143 (283)
T cd04727 143 G 143 (283)
T ss_pred C
Confidence 3
No 287
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=83.72 E-value=8.5 Score=43.79 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
..+.++++.++|++.|.| |+.-.-++. ..+.|+++++.+|+ ++|.. -...-...+..++++||+.|.+++
T Consensus 242 ~~~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~---~~v~a----G~V~t~~~a~~~~~aGad~I~vg~ 311 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPH---VDIIA----GNVVTADQAKNLIDAGADGLRIGM 311 (495)
T ss_pred HHHHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCC---ceEEE----CCcCCHHHHHHHHHcCCCEEEECC
Confidence 378899999999999988 443334444 46789999999874 66765 123334688899999999998754
No 288
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=83.62 E-value=35 Score=34.41 Aligned_cols=107 Identities=23% Similarity=0.239 Sum_probs=66.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCH---HHHHHHHHHHHHhCCCCC-ceeEEEecCCCcchHHHHH
Q 007056 221 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMP---TEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANT 296 (620)
Q Consensus 221 ~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P---~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANs 296 (620)
+.+.+.-+....+.+ ++.+.+.||+.|-+.=-.|.+.. ..+.+-++.+++...+.. +++++...=+|--.. --+
T Consensus 61 gFP~G~~~~~~K~~E-~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~-~a~ 138 (211)
T TIGR00126 61 GFPLGASTTDVKLYE-TKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIR-KAC 138 (211)
T ss_pred CCCCCCCcHHHHHHH-HHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHH-HHH
Confidence 444443333344444 46677899999888877886554 556666666666543321 455555443333343 456
Q ss_pred HHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 297 IAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 297 laAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
..++++||+.|-++-+ .+ .+++.+|++-...+.
T Consensus 139 ~ia~eaGADfvKTsTG-f~--~~gat~~dv~~m~~~ 171 (211)
T TIGR00126 139 EICIDAGADFVKTSTG-FG--AGGATVEDVRLMRNT 171 (211)
T ss_pred HHHHHhCCCEEEeCCC-CC--CCCCCHHHHHHHHHH
Confidence 7799999999999832 22 366888876655554
No 289
>TIGR03586 PseI pseudaminic acid synthase.
Probab=83.25 E-value=6.9 Score=42.12 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEee--cCCccccCHHHHHH--HHHHHHHhCCCCCcee
Q 007056 205 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PDTVGITMPTEFGK--LIADIKANTPGIENVV 280 (620)
Q Consensus 205 ~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L--~DTvG~~~P~~v~~--li~~l~~~~~~~~~v~ 280 (620)
+.++.+.+.|.. |.++- +.++.+.+...++.+.+.|...|.| | |.++-+|.+... .|..+++.++ ++
T Consensus 125 ~LL~~va~~gkP-vilst---G~~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~----~p 195 (327)
T TIGR03586 125 PLIRYVAKTGKP-IIMST---GIATLEEIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN----VP 195 (327)
T ss_pred HHHHHHHhcCCc-EEEEC---CCCCHHHHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC----CC
Confidence 345555567875 77754 3368888888888888899876777 7 777777766543 5677888773 56
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
||+=-|- .|..-+++|+..||+.|+-=+
T Consensus 196 VG~SDHt---~G~~~~~aAva~GA~iIEkH~ 223 (327)
T TIGR03586 196 VGLSDHT---LGILAPVAAVALGACVIEKHF 223 (327)
T ss_pred EEeeCCC---CchHHHHHHHHcCCCEEEeCC
Confidence 8774453 446888999999999986433
No 290
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=83.23 E-value=17 Score=38.04 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcC-C--cEEeecCCccccCHH-----HHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHH
Q 007056 227 RSDRKFLYEILGEVIKVG-A--TTLNIPDTVGITMPT-----EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 298 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aG-a--~~I~L~DTvG~~~P~-----~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 298 (620)
|-+.-.+..+.+.++..| + .++.|.|++-.-.=+ .+...++.+|+..|. ...|++-+|| ..-+..
T Consensus 124 RKt~Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~--~~~I~vev~t-----~eea~~ 196 (269)
T cd01568 124 RKTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPF--EKKIEVEVET-----LEEAEE 196 (269)
T ss_pred CCCChhhHHHHHHHHHhCCCccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCC--CCeEEEecCC-----HHHHHH
Confidence 555455777777777664 3 578888876543222 244568888988874 3568888887 678889
Q ss_pred HHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccc--cccCccccCCChhhHHHHH
Q 007056 299 GACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGE--HILGGLYTGINTRHIVMAS 354 (620)
Q Consensus 299 Av~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~--~~~~G~~t~idl~~L~~~s 354 (620)
|+++||++|-. ||...|++-........ +..--..-||+++.+.+++
T Consensus 197 A~~~gaD~I~l---------d~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a 245 (269)
T cd01568 197 ALEAGADIIML---------DNMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYA 245 (269)
T ss_pred HHHcCCCEEEE---------CCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHH
Confidence 99999999865 67777777655543211 1001123478888777665
No 291
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.20 E-value=16 Score=41.63 Aligned_cols=141 Identities=15% Similarity=0.169 Sum_probs=77.7
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec-CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHh
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 170 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~ 170 (620)
+...++++-.+.++.|.+.|+|.||+.. +..+..-.+.++.+.+..+.. ...++|- -...++.+.+++
T Consensus 235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~-------~~V~aGn-V~t~e~a~~li~--- 303 (502)
T PRK07107 235 GAGINTRDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDS-------VKVGAGN-VVDREGFRYLAE--- 303 (502)
T ss_pred eeccChhhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCC-------ceEEecc-ccCHHHHHHHHH---
Confidence 3455666778999999999999999962 333333467888888754311 1223321 134555555554
Q ss_pred cCCCCEEEEEecCCHHHHHH-HhCC--CHHHHHHHHHHHH-HHHHHcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHHcCC
Q 007056 171 YAKRPRIHTFIATSGIHMEH-KLRK--TKQQVVEIARSMV-KFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~-~l~~--t~ee~l~~~~~~v-~~a~~~G~~~V~f~~ed~~-r~d~e~l~~~~~~~~~aGa 245 (620)
+|++.|.+-+..--+...+ +++. ..-..+..+.+++ +++++.|.. +..-+ |++ |+.- ++++++ .+||
T Consensus 304 -aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~-~~via-dgGir~~g----di~KAl-a~GA 375 (502)
T PRK07107 304 -AGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVY-IPICS-DGGIVYDY----HMTLAL-AMGA 375 (502)
T ss_pred -cCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCc-ceEEE-cCCCCchh----HHHHHH-HcCC
Confidence 4888877644333222222 3333 3333444444444 356667842 22222 333 4443 455544 4899
Q ss_pred cEEeec
Q 007056 246 TTLNIP 251 (620)
Q Consensus 246 ~~I~L~ 251 (620)
+.+-+-
T Consensus 376 ~~vm~G 381 (502)
T PRK07107 376 DFIMLG 381 (502)
T ss_pred CeeeeC
Confidence 988754
No 292
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=83.19 E-value=18 Score=39.56 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=69.3
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHH-HHH
Q 007056 218 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 296 (620)
Q Consensus 218 V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANs 296 (620)
..|.+..+ -.+++.-.+.++.+.+.+.+.+.|.--...-...++.++|..++..+|. +.|. |. +|.|. -+.
T Consensus 183 ~lfgiVQG-g~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~--~kPr--yl---~Gvg~P~~i 254 (366)
T PRK00112 183 ALFGIVQG-GVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPE--DKPR--YL---MGVGTPEDL 254 (366)
T ss_pred eEEEEeeC-CccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCC--cCCe--Ee---cCCCCHHHH
Confidence 45666533 4556666778888888899988888754445788899999999999986 4454 32 55554 589
Q ss_pred HHHHHhcCcEEeeccccccCCcCc
Q 007056 297 IAGACAGARQVEVTINGIGERAGN 320 (620)
Q Consensus 297 laAv~aGA~~Vd~Ti~GlGERaGN 320 (620)
+.++..|+|.+|++.-=.=.|.|.
T Consensus 255 ~~~v~~GvD~FD~~~p~r~Ar~G~ 278 (366)
T PRK00112 255 VEGVARGVDMFDCVMPTRNARNGT 278 (366)
T ss_pred HHHHHcCCCEEeeCCccccccCCc
Confidence 999999999999988644444443
No 293
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=83.18 E-value=49 Score=35.62 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHcCCCEEEEecCC---CChhHHH-----HHHHHHHHh
Q 007056 97 SKEKLDIARQLAKLGVDIIEAGFPA---ASKEDFE-----AVRTIAKEV 137 (620)
Q Consensus 97 ~~~Kl~Ia~~L~~~Gvd~IEvGfP~---~s~~d~e-----~v~~i~~~~ 137 (620)
++.-+++++.+.++|++.|-++-|. -+|++|+ ..++|.+.+
T Consensus 185 t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i 233 (346)
T PRK00115 185 ADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAEL 233 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3444566777778999999887552 3566664 235555544
No 294
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.13 E-value=17 Score=36.64 Aligned_cols=138 Identities=25% Similarity=0.330 Sum_probs=87.4
Q ss_pred HHHHHHHHhHcCCCEEEEecCC----CChh-HHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 100 KLDIARQLAKLGVDIIEAGFPA----ASKE-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 100 Kl~Ia~~L~~~Gvd~IEvGfP~----~s~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
-.+-|..|.+.|+|.|--|--. -.|+ |.+...+|.+..+ ++++.. + -..+++|+..++
T Consensus 56 t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~---------v~vvTt---s-----~Avv~aL~al~a 118 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKG---------VPVVTT---S-----TAVVEALNALGA 118 (238)
T ss_pred HHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccC---------Cceeec---h-----HHHHHHHHhhCc
Confidence 3455778899999999876321 1222 4454555544321 133221 1 122455555688
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE---cCC---CCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPE---DAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f---~~e---d~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
.+|.+..|-.+ +--+..++|...+|++.|.| +.. ..+|.+|..++++++.+..-++|.|
T Consensus 119 ~ri~vlTPY~~---------------evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~Dai 183 (238)
T COG3473 119 QRISVLTPYID---------------EVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAI 183 (238)
T ss_pred ceEEEeccchh---------------hhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeE
Confidence 99999887543 22335678899999986666 222 4778899999999999888888888
Q ss_pred eecCCccccCHHHHHHHHHHHHHhCC
Q 007056 249 NIPDTVGITMPTEFGKLIADIKANTP 274 (620)
Q Consensus 249 ~L~DTvG~~~P~~v~~li~~l~~~~~ 274 (620)
-+.=| -.+..++|..+-+.++
T Consensus 184 FiSCT-----nlRt~eii~~lE~~~G 204 (238)
T COG3473 184 FISCT-----NLRTFEIIEKLERDTG 204 (238)
T ss_pred EEEee-----ccccHHHHHHHHHHhC
Confidence 87733 3345567777766653
No 295
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=82.89 E-value=32 Score=34.46 Aligned_cols=151 Identities=21% Similarity=0.301 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEec----CCC----ChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGF----PAA----SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGf----P~~----s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
+..++.++.++=++.+.+.|-++|++|- |.+ ..++++.+..+.+.+... .. .....+--.+.+-++
T Consensus 13 ~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~-~~-----~~plSIDT~~~~v~~ 86 (210)
T PF00809_consen 13 GRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREE-NP-----DVPLSIDTFNPEVAE 86 (210)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHH-HT-----TSEEEEEESSHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhcc-CC-----CeEEEEECCCHHHHH
Confidence 3456667777779999999999999994 322 223455554444433210 00 112233334667777
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCCH----HHHHH
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED----AGRSDR----KFLYE 235 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed----~~r~d~----e~l~~ 235 (620)
.++++ |.+.|.-..+..+ ..++++.++++|+. +...+.+ ....++ +.+.+
T Consensus 87 ~aL~~----g~~~ind~~~~~~-----------------~~~~~~l~a~~~~~-vV~m~~~~~~~~~~~~~~~~~~~~~~ 144 (210)
T PF00809_consen 87 AALKA----GADIINDISGFED-----------------DPEMLPLAAEYGAP-VVLMHSDGNPKGMPETADYRLDIAEE 144 (210)
T ss_dssp HHHHH----TSSEEEETTTTSS-----------------STTHHHHHHHHTSE-EEEESESSETTTTTSSHHHSHSHHHH
T ss_pred HHHHc----CcceEEecccccc-----------------cchhhhhhhcCCCE-EEEEecccccccccccchhhhhHHHH
Confidence 77765 7776543322110 23567777888875 4443322 111111 23334
Q ss_pred HHHH-------HHHcCC--cEEeecCCcccc-CHHHHHHHHHHHH
Q 007056 236 ILGE-------VIKVGA--TTLNIPDTVGIT-MPTEFGKLIADIK 270 (620)
Q Consensus 236 ~~~~-------~~~aGa--~~I~L~DTvG~~-~P~~v~~li~~l~ 270 (620)
+.+. +.++|. +.|.|==-+|.. ++.+-.++++.++
T Consensus 145 i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~ 189 (210)
T PF00809_consen 145 IIEFLEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE 189 (210)
T ss_dssp HHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence 4444 445898 556553334443 3455445554444
No 296
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=82.82 E-value=54 Score=32.75 Aligned_cols=157 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceE---E-------eecccchhhHHHH
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI---C-------GLSRCNERDIKTA 165 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i---~-------~~~r~~~~dI~~a 165 (620)
+.++-.+|++...+.|..-++++. ++.++.+.+.... |.+ . .+.....+.++.+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~~-------~~~i~~i~~~~~~---------Pil~~~~~d~~~~~~~~~~~~~~v~~a 84 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRANG-------VEDIKAIRAVVDV---------PIIGIIKRDYPDSEVYITPTLKEVDAL 84 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcCC-------HHHHHHHHHhCCC---------CEEEEEecCCCCCCceECCCHHHHHHH
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHH------HHHHHHHHHHHH-cCCCEEEEcCCCCCCCCHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVV------EIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILG 238 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l------~~~~~~v~~a~~-~G~~~V~f~~ed~~r~d~e~l~~~~~ 238 (620)
.++ |++.|-+-.+ . +.+.++++++++ .|+. +.... ++++.+ +
T Consensus 85 ~~a----Gad~I~~d~~-----------------~~~~p~~~~~~~~i~~~~~~~~i~-vi~~v-----~t~ee~----~ 133 (221)
T PRK01130 85 AAA----GADIIALDAT-----------------LRPRPDGETLAELVKRIKEYPGQL-LMADC-----STLEEG----L 133 (221)
T ss_pred HHc----CCCEEEEeCC-----------------CCCCCCCCCHHHHHHHHHhCCCCe-EEEeC-----CCHHHH----H
Q ss_pred HHHHcCCcEEeec--CCccc--cCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcch-HHHHHHHHHHhcCcEE
Q 007056 239 EVIKVGATTLNIP--DTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 307 (620)
Q Consensus 239 ~~~~aGa~~I~L~--DTvG~--~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~aGA~~V 307 (620)
.+.++|++.|.+- +..|. .....-.++++.+++.+ ++|+-. ..|. -..+...++++||+.|
T Consensus 134 ~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~----~iPvia----~GGI~t~~~~~~~l~~GadgV 199 (221)
T PRK01130 134 AAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV----GCPVIA----EGRINTPEQAKKALELGAHAV 199 (221)
T ss_pred HHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC----CCCEEE----ECCCCCHHHHHHHHHCCCCEE
No 297
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.80 E-value=20 Score=36.52 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=17.4
Q ss_pred HHHHHHHhHcCCCEEEEecCCC
Q 007056 101 LDIARQLAKLGVDIIEAGFPAA 122 (620)
Q Consensus 101 l~Ia~~L~~~Gvd~IEvGfP~~ 122 (620)
.+.++.+.+.|++.|-+..+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC
Confidence 5568888889999999977654
No 298
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=82.80 E-value=22 Score=37.25 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=44.1
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCC
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa 245 (620)
++.+.+.|++.|-+..++.+.+ .+|.+|-.+.+..+++.++.. . .|..+. +..+.+...+.++.+.++|+
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~-----~Ls~~Er~~~~~~~~~~~~~~-~-~vi~gv---~~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESP-----TLSHEEHKKVIEFVVDLVNGR-V-PVIAGT---GSNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHHcCCCEEEECccCcccc-----cCCHHHHHHHHHHHHHHhCCC-C-eEEEeC---CCccHHHHHHHHHHHHHcCC
Confidence 3334444555555555555433 245555555554455544321 2 133322 22334555555565666665
Q ss_pred cEEeec-CCccccCHHHHHHHHHHHHHhC
Q 007056 246 TTLNIP-DTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 246 ~~I~L~-DTvG~~~P~~v~~li~~l~~~~ 273 (620)
|.+.+. =.....+++++.+.++.+.+..
T Consensus 95 d~v~v~pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 95 DGFLVVTPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred CEEEEcCCcCCCCCHHHHHHHHHHHHhcC
Confidence 543321 1122234455555555555443
No 299
>PRK08508 biotin synthase; Provisional
Probab=82.79 E-value=3.9 Score=42.82 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEE--cCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIA 267 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f--~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~ 267 (620)
++.|++++. ++++++.|+..+.+ +-......+.+++.++++.+.+.+.+ +.++-+.|..+++++.+|-+
T Consensus 40 ~s~eeI~~~----a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~ 110 (279)
T PRK08508 40 KDIEQIVQE----AKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKK 110 (279)
T ss_pred CCHHHHHHH----HHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHH
Confidence 466666554 34445567654444 11111223567778888777766532 23444677777666555533
No 300
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=82.74 E-value=33 Score=36.75 Aligned_cols=168 Identities=21% Similarity=0.204 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHhHcC-CCEEEEe--cCCCC-----hhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHH
Q 007056 94 TLTSKEKLDIARQLAKLG-VDIIEAG--FPAAS-----KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 165 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~G-vd~IEvG--fP~~s-----~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 165 (620)
.-+.++..+++..+.+++ .|+||+= .|-.. .++.|.+..+.+.+... .-+|.+.=++. +..||...
T Consensus 105 ~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-----~~~Pv~vKl~P-~~~di~~i 178 (310)
T COG0167 105 GPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-----TKVPVFVKLAP-NITDIDEI 178 (310)
T ss_pred CCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-----ccCceEEEeCC-CHHHHHHH
Confidence 345888999999999999 9999995 34311 12566777777665432 12466666665 78888888
Q ss_pred HHHHhcCCCCEEEEEecCCH---HHHHH--------HhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCHHHH
Q 007056 166 WEAVKYAKRPRIHTFIATSG---IHMEH--------KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFL 233 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd---~h~~~--------~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~r~d~e~l 233 (620)
.+++.++|.+-|.+...+-+ +-.+. .-|.|-..+...+.++|+....+ +.+ +-... -++=.+.+.+
T Consensus 179 A~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~-ipIIG-vGGI~s~~DA 256 (310)
T COG0167 179 AKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGD-IPIIG-VGGIETGEDA 256 (310)
T ss_pred HHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCC-CcEEE-ecCcCcHHHH
Confidence 88888899998777654331 22222 12456666777788888876654 312 21111 2445666666
Q ss_pred HHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhC
Q 007056 234 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~ 273 (620)
+|.+ .+||+.+-++-..=+--|.-+.++++.+.+.+
T Consensus 257 ~E~i----~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l 292 (310)
T COG0167 257 LEFI----LAGASAVQVGTALIYKGPGIVKEIIKGLARWL 292 (310)
T ss_pred HHHH----HcCCchheeeeeeeeeCchHHHHHHHHHHHHH
Confidence 5554 47999888887777677888888887776643
No 301
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=82.73 E-value=7.9 Score=39.58 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCCCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 90 SPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 90 s~g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
+.+..|+-.+|+.+++.| |+|.||..- .+.| + ++++. -|.+...-.+- .++
T Consensus 13 Alp~~~sW~erl~~AK~~---GFDFvEmSv---DEsD-e---RLaRL----------------DWs~~er~~l~---~ai 63 (287)
T COG3623 13 ALPNGFSWLERLALAKEL---GFDFVEMSV---DESD-E---RLARL----------------DWSKEERLALV---NAI 63 (287)
T ss_pred hccCCCCHHHHHHHHHHc---CCCeEEEec---cchH-H---HHHhc----------------CCCHHHHHHHH---HHH
Confidence 456779999999999865 999999932 1111 1 11111 01111111111 222
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCH-------HHHHHH
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLR----KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG--RSDR-------KFLYEI 236 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~----~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~--r~d~-------e~l~~~ 236 (620)
...|+..=.+..+ .|++.-|| .++++.++.+.+++..|+++|+..+....-|.+ ..|. +-+...
T Consensus 64 ~etgv~ipSmClS---aHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a 140 (287)
T COG3623 64 QETGVRIPSMCLS---AHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWA 140 (287)
T ss_pred HHhCCCccchhhh---hhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHH
Confidence 2234332222222 35555555 247888999999999999999864433222221 1222 223333
Q ss_pred HHHHHHcCCc-EEeecCCccccCHHHHHHHHHHH
Q 007056 237 LGEVIKVGAT-TLNIPDTVGITMPTEFGKLIADI 269 (620)
Q Consensus 237 ~~~~~~aGa~-~I~L~DTvG~~~P~~v~~li~~l 269 (620)
++.+.++++. .+-+-||-=..+-.....+.+.+
T Consensus 141 ~~lA~~aqV~lAvEiMDtpfm~sIsk~~~~~~~I 174 (287)
T COG3623 141 VELAARAQVMLAVEIMDTPFMNSISKWLKYDKYI 174 (287)
T ss_pred HHHHHhhccEEEeeecccHHHHHHHHHHHHHHHh
Confidence 3444445543 46666775433333333333333
No 302
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=82.70 E-value=8 Score=42.35 Aligned_cols=89 Identities=21% Similarity=0.176 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc-------cccCHHHHHHHHHHHHHhC
Q 007056 201 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-------GITMPTEFGKLIADIKANT 273 (620)
Q Consensus 201 ~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv-------G~~~P~~v~~li~~l~~~~ 273 (620)
+.+.+.++.+++.+.. |.. |.++....++++.+.++|++.|.+-.|+ |...|..+.++++. +
T Consensus 119 ~l~~~ii~~vr~a~Vt-vki------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~ 187 (369)
T TIGR01304 119 ELLGERIAEVRDSGVI-TAV------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----L 187 (369)
T ss_pred HHHHHHHHHHHhcceE-EEE------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH----C
Confidence 4556677777776642 333 2234577799999999999999987653 55678766666553 3
Q ss_pred CCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 274 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 274 ~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
+ ++|- + .+ -.....++.++++||+.|.
T Consensus 188 ~----IPVI-~--G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 188 D----VPVI-A--GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred C----CCEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence 2 4453 2 23 3335667888999999987
No 303
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=82.55 E-value=20 Score=39.08 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=62.7
Q ss_pred chhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHH
Q 007056 158 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 235 (620)
Q Consensus 158 ~~~dI~-~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~ 235 (620)
++..+. .-++.++.+|+.+|++-+=+.+-.....+++. ...+.+.++++.+++.|+..|.++...+ ...+.+.+.+
T Consensus 102 ~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~ 179 (375)
T PRK05628 102 NPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRA 179 (375)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHH
Confidence 334443 23566777899999997666665666677764 2345567788899999986455544322 3456788889
Q ss_pred HHHHHHHcCCcEEee
Q 007056 236 ILGEVIKVGATTLNI 250 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L 250 (620)
.++.+.+.|++.|.+
T Consensus 180 tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 180 SLDAALEAGVDHVSA 194 (375)
T ss_pred HHHHHHhcCCCEEEe
Confidence 999999999988864
No 304
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=82.52 E-value=70 Score=33.82 Aligned_cols=181 Identities=21% Similarity=0.215 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh----hH--HHHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 166 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~----~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 166 (620)
..+.|.-..|++.-.+.+-+.|=-.+++.-. .+ ...++.+++..+ +|.+.=+--+ ..+++..++
T Consensus 25 ~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~---------vPV~lHlDHg~~~~~~~~ai 95 (286)
T COG0191 25 INNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG---------VPVALHLDHGASFEDCKQAI 95 (286)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC---------CCEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999988776664321 11 244555555422 3555444444 456666666
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCC--CC------CCCHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--AG------RSDRKF 232 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed--~~------r~d~e~ 232 (620)
++ |...+.+=.|. .+.||+++..++.+++|+..|+. |+- +-|| .. .++|+.
T Consensus 96 ~~----GFsSvMiDgS~----------~~~eENi~~tkevv~~ah~~gvs-VEaElG~~GG~Edg~~~~~~~~~~tdp~e 160 (286)
T COG0191 96 RA----GFSSVMIDGSH----------LPFEENIAITKEVVEFAHAYGVS-VEAELGTLGGEEDGVVLYTDPADLTDPEE 160 (286)
T ss_pred hc----CCceEEecCCc----------CCHHHHHHHHHHHHHHHHHcCCc-EEEEeccccCccCCcccccchhhhCCHHH
Confidence 54 77776543332 45789999999999999999974 543 3344 22 344554
Q ss_pred HHHHHHHHHHcCCcEE--eecCCccccCHHH---HHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 233 LYEILGEVIKVGATTL--NIPDTVGITMPTE---FGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I--~L~DTvG~~~P~~---v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
..++ +..-|.|.+ .|.-.=|.-.|.. =-++++.+++.++ +||-+|.=- |.....-..|++.|+.-|
T Consensus 161 a~~f---v~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~----~PlVlHGgS--Gip~~eI~~aI~~GV~Kv 231 (286)
T COG0191 161 ALEF---VERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS----LPLVLHGGS--GIPDEEIREAIKLGVAKV 231 (286)
T ss_pred HHHH---HhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC----CCEEEeCCC--CCCHHHHHHHHHhCceEE
Confidence 4443 344566653 3334444444311 2356677777663 678877654 666677777777776665
No 305
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.47 E-value=63 Score=33.23 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 175 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~ 175 (620)
++++-.+.++.+.+.|+..+=+-.......|.+.++.+.+.++... ...+=+..+.+.++....++.+...++.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~------~l~vDan~~~~~~~a~~~~~~l~~~~i~ 158 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDA------ELRVDANRGWTPKQAIRALRALEDLGLD 158 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhcCCCC------EEEEeCCCCcCHHHHHHHHHHHHhcCCC
Confidence 3455566666777778876655321112356777777777654321 1122222223344444444555555666
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc
Q 007056 176 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 255 (620)
Q Consensus 176 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG 255 (620)
.|.-.++..+ ++ ...+..+..++. |.. |.+-.++..+.+ +++.++-.+...|..=
T Consensus 159 ~iEeP~~~~d--------------~~---~~~~l~~~~~ip-ia~---dE~~~~~~~~~~----~i~~~~~d~v~~k~~~ 213 (265)
T cd03315 159 YVEQPLPADD--------------LE---GRAALARATDTP-IMA---DESAFTPHDAFR----ELALGAADAVNIKTAK 213 (265)
T ss_pred EEECCCCccc--------------HH---HHHHHHhhCCCC-EEE---CCCCCCHHHHHH----HHHhCCCCEEEEeccc
Confidence 6554332211 11 111222333333 332 344455555443 3344433344455554
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHH
Q 007056 256 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 297 (620)
Q Consensus 256 ~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsl 297 (620)
..-..+..++....++. ++++.+|||...|++.+.++
T Consensus 214 ~GGi~~~~~~~~~A~~~-----gi~~~~~~~~~s~i~~~a~~ 250 (265)
T cd03315 214 TGGLTKAQRVLAVAEAL-----GLPVMVGSMIESGLGTLANA 250 (265)
T ss_pred ccCHHHHHHHHHHHHHc-----CCcEEecCccchHHHHHHHH
Confidence 44455566666666654 36789999988888876553
No 306
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=82.42 E-value=19 Score=35.93 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=78.3
Q ss_pred ceEEeecccchhhHHHHHHHHhcCCCCEEEEEecCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCC
Q 007056 149 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATS-GIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAG 226 (620)
Q Consensus 149 ~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~S-d~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~ 226 (620)
|.+.-++=...+++..+.+.++.+|.+.|.+-.+.. ..+.+..+|-+.+...+.+.+.++..++. +.. +.+..-.+
T Consensus 56 p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~-v~vk~r~~- 133 (231)
T cd02801 56 PLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP-VTVKIRLG- 133 (231)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-EEEEEeec-
Confidence 444444434567777777777778999887755432 12222334444444556666666666653 222 33311101
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcch-HHHHHHHHHHh
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACA 302 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~a 302 (620)
..+.+...++++.+.++|++.|.+-+-.. ...|. -.+.++.+++.. +++|..-. |. -...+..+++.
T Consensus 134 ~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~~~~~i~~~~----~ipvi~~G----gi~~~~d~~~~l~~ 204 (231)
T cd02801 134 WDDEEETLELAKALEDAGASALTVHGRTREQRYSGPA-DWDYIAEIKEAV----SIPVIANG----DIFSLEDALRCLEQ 204 (231)
T ss_pred cCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCC-CHHHHHHHHhCC----CCeEEEeC----CCCCHHHHHHHHHh
Confidence 11115677888999999999998755421 11222 234556666643 24454321 22 13344455555
Q ss_pred -cCcEE
Q 007056 303 -GARQV 307 (620)
Q Consensus 303 -GA~~V 307 (620)
||+.|
T Consensus 205 ~gad~V 210 (231)
T cd02801 205 TGVDGV 210 (231)
T ss_pred cCCCEE
Confidence 56655
No 307
>PRK12677 xylose isomerase; Provisional
Probab=82.37 E-value=11 Score=41.43 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.0
Q ss_pred HHHHHHHHhHcCCCEEEEe
Q 007056 100 KLDIARQLAKLGVDIIEAG 118 (620)
Q Consensus 100 Kl~Ia~~L~~~Gvd~IEvG 118 (620)
-.++++.+.++|++.||+.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh 51 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFH 51 (384)
T ss_pred HHHHHHHHHHhCCCEEEec
Confidence 4566788899999999997
No 308
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.29 E-value=33 Score=36.84 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCCh-----hH----HHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGF--PAASK-----ED----FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~-----~d----~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
.+.++-.++++.+.++|+|.||+-+ |-..+ +. ++.++.+++... .|.++=+ +....++.
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~---------iPV~vKl-~p~~~~~~ 180 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS---------IPVAVKL-SPYFSNLA 180 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC---------CcEEEEe-CCCchhHH
Confidence 4678889999999999999999943 21111 11 233344433211 2333222 22334566
Q ss_pred HHHHHHhcCCCCEEEEEecCCH--HHHHH-----HhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCHHHHHH
Q 007056 164 TAWEAVKYAKRPRIHTFIATSG--IHMEH-----KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYE 235 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd--~h~~~-----~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~r~d~e~l~~ 235 (620)
...+++..+|++.|.+...... +..+. ..+.+-...+..+.+.|..+++. .+. |.- .++=.+.+.+.+
T Consensus 181 ~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ip-Iig---~GGI~s~~Da~e 256 (334)
T PRK07565 181 NMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGAD-LAA---TTGVHDAEDVIK 256 (334)
T ss_pred HHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCC-EEE---ECCCCCHHHHHH
Confidence 6667777889998877654321 11110 12234444555666677776654 332 322 244566666655
Q ss_pred HHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 236 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
++ .+||+.+-++=.+=.--|.-+.++++.|.+.
T Consensus 257 ~l----~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~ 289 (334)
T PRK07565 257 ML----LAGADVVMIASALLRHGPDYIGTILRGLEDW 289 (334)
T ss_pred HH----HcCCCceeeehHHhhhCcHHHHHHHHHHHHH
Confidence 55 3799888877332221266666677666654
No 309
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=82.24 E-value=15 Score=38.88 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCCEEEEcCCCCCC-CCHHHHHHHHHHHHHcCCc---
Q 007056 172 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEFSPEDAGR-SDRKFLYEILGEVIKVGAT--- 246 (620)
Q Consensus 172 ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~-~~G~~~V~f~~ed~~r-~d~e~l~~~~~~~~~aGa~--- 246 (620)
.|+..+.+... +. .....+.+.++.++.+.+.++.++ +.|+. +.+... +.+ .+++.+.+.++.+.+.+.+
T Consensus 85 ~Gvt~~E~~~~--p~-~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv 159 (325)
T cd01320 85 DGVVYAEIRFS--PQ-LHTRRGLSFDEVVEAVLRGLDEAEAEFGIK-ARLILC-GLRHLSPESAQETLELALKYRDKGVV 159 (325)
T ss_pred cCCEEEEEEeC--ch-hhccCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEEE-ecCCCCHHHHHHHHHHHHhccCCCEE
Confidence 47655544322 21 112456788999998888888764 55764 444221 122 3567777888777765444
Q ss_pred EEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHH-hcCcE
Q 007056 247 TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC-AGARQ 306 (620)
Q Consensus 247 ~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~-aGA~~ 306 (620)
.+.++..-....++++..++...++. ++++.+|+.-+.+ ..+...|++ .|+++
T Consensus 160 g~~l~~~~~~~~~~~~~~~~~~A~~~-----g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 160 GFDLAGDEVGFPPEKFVRAFQRAREA-----GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred EeecCCCCCCCCHHHHHHHHHHHHHC-----CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 23332221233678888888888764 3668888876533 234456666 78754
No 310
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=82.23 E-value=22 Score=37.66 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=52.0
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCC
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa 245 (620)
++.+...|++.|-+..++++.+. +|.+|-.+.+..+++.+... +. |..+. +. +.+...+.++.+.++|+
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~-----Lt~eEr~~~~~~~~~~~~~~-~p-vi~gv---~~-~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFS-----LTPDEYSQVVRAAVETTAGR-VP-VIAGA---GG-GTAQAIEYAQAAERAGA 102 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCccc-----CCHHHHHHHHHHHHHHhCCC-Cc-EEEec---CC-CHHHHHHHHHHHHHhCC
Confidence 44445556666666666666443 56666666555555554322 22 33333 12 44556666666667776
Q ss_pred cEEeec-CCccccCHHHHHHHHHHHHHhC
Q 007056 246 TTLNIP-DTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 246 ~~I~L~-DTvG~~~P~~v~~li~~l~~~~ 273 (620)
+.+.+. -..-..+++++.+.++.+.+..
T Consensus 103 dav~~~pP~y~~~~~~~i~~~f~~va~~~ 131 (303)
T PRK03620 103 DGILLLPPYLTEAPQEGLAAHVEAVCKST 131 (303)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 654432 2223334566666666666554
No 311
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=82.13 E-value=72 Score=33.65 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCC---hhHH--HHHHHHHHHhcccccccCCccceEEeeccc-chhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KEDF--EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s---~~d~--e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 167 (620)
.++.+.-..+++.-.+.+-+.|=-.+|... +.++ ..++.+++.. -+|...=|-.+ ..+.++.+++
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpv~lHlDH~~~~e~i~~Al~ 95 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA---------KVPVAVHFDHGMTFEKIKEALE 95 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999997755455432 2222 3444444432 13443333333 2334444444
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE-----Ec-CCC------CCCCCHHHHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE-----FS-PED------AGRSDRKFLYE 235 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~-----f~-~ed------~~r~d~e~l~~ 235 (620)
+|...|.+=.+ ..+.+|+++..++++++++..|.. |+ .+ -+| .+-++++.+.+
T Consensus 96 ----~G~tsVm~d~s----------~~~~~eni~~t~~v~~~a~~~gv~-veaE~ghlG~~d~~~~~~g~s~t~~eea~~ 160 (281)
T PRK06806 96 ----IGFTSVMFDGS----------HLPLEENIQKTKEIVELAKQYGAT-VEAEIGRVGGSEDGSEDIEMLLTSTTEAKR 160 (281)
T ss_pred ----cCCCEEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeECCccCCcccccceeCCHHHHHH
Confidence 38888876433 246789999999999999999874 32 22 111 22467776655
Q ss_pred HHHHHHHcCCcEEee--cCCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 236 ILGEVIKVGATTLNI--PDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L--~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
.++ +.|+|.+.+ .=.-|.. .|.-=-++++.+++.++ +||-.|+ -.|.-..|...++++|++.|...
T Consensus 161 f~~---~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~----iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 161 FAE---ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH----IPLVLHG--GSGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHH---hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC----CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEh
Confidence 443 469998877 3333322 12222356777777763 6788775 45888899999999999998653
No 312
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=82.07 E-value=7.7 Score=35.06 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEec
Q 007056 206 MVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC 285 (620)
Q Consensus 206 ~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~ 285 (620)
-++.+++.|++.|...-.|.-..+.-...++-+++.++|-..+.+|=+.|-.+++.+..+.+.+.+ .|+ |+-+||
T Consensus 19 d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~----Pvl~hC 93 (110)
T PF04273_consen 19 DLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK----PVLAHC 93 (110)
T ss_dssp HHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT----SEEEE-
T ss_pred HHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC----CEEEEC
Confidence 356677899986544333433333233445667788899999999999999999999988877776 453 588888
Q ss_pred CCC
Q 007056 286 QND 288 (620)
Q Consensus 286 HND 288 (620)
.-.
T Consensus 94 ~sG 96 (110)
T PF04273_consen 94 RSG 96 (110)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 313
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=82.03 E-value=33 Score=37.00 Aligned_cols=140 Identities=21% Similarity=0.270 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceE--------Eeecccch------hhH
Q 007056 97 SKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI--------CGLSRCNE------RDI 162 (620)
Q Consensus 97 ~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i--------~~~~r~~~------~dI 162 (620)
.+.-+.=+..|.++|.|++-+.-| ..++.++++.|++.+.-.+..|.-+..++ +.--|-|+ +-+
T Consensus 35 v~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v 112 (361)
T COG0821 35 VEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRV 112 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHH
Confidence 444455577889999999999776 46778899999886522111110000000 01112222 224
Q ss_pred HHHHHHHhcCCCC-EEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHH
Q 007056 163 KTAWEAVKYAKRP-RIHTFIATSGIHMEHKL-RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEV 240 (620)
Q Consensus 163 ~~a~eal~~ag~~-~v~i~~~~Sd~h~~~~l-~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~ 240 (620)
..-+++.++.|.+ ||.+-...=|-.+..++ +-++|..++-+...++++.++|+..+.+|.- -+|+..+.+..+.+
T Consensus 113 ~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K---~Sdv~~~v~aYr~l 189 (361)
T COG0821 113 REVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVK---ASDVQLMVAAYRLL 189 (361)
T ss_pred HHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHHHH
Confidence 4455666667777 67776666667777777 5688999999999999999999887777763 34555555555444
Q ss_pred H
Q 007056 241 I 241 (620)
Q Consensus 241 ~ 241 (620)
.
T Consensus 190 A 190 (361)
T COG0821 190 A 190 (361)
T ss_pred H
Confidence 3
No 314
>PLN02334 ribulose-phosphate 3-epimerase
Probab=82.02 E-value=54 Score=33.09 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=93.1
Q ss_pred HHHHHHHHHhHcCCCEEEEecCCC--ChhH-H--HHHHHHHHHhcccccccCCccceEEeecccchhh-HHHHHHHHhcC
Q 007056 99 EKLDIARQLAKLGVDIIEAGFPAA--SKED-F--EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAWEAVKYA 172 (620)
Q Consensus 99 ~Kl~Ia~~L~~~Gvd~IEvGfP~~--s~~d-~--e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~eal~~a 172 (620)
.-.+.++.+.+.|++.|.+-..-. .|.. + +.++.+.+. .+. +.-+-|--.++.| ++.+. .+
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~-~~~--------~~~vhlmv~~p~d~~~~~~----~~ 87 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH-TDA--------PLDCHLMVTNPEDYVPDFA----KA 87 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc-CCC--------cEEEEeccCCHHHHHHHHH----Hc
Confidence 345577788899999998853221 2221 2 566766653 111 1011111122333 44443 45
Q ss_pred CCCEEEEEecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC-CcEE--
Q 007056 173 KRPRIHTFIAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTL-- 248 (620)
Q Consensus 173 g~~~v~i~~~~-Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG-a~~I-- 248 (620)
|.+.|.+-... . -+...+.++.+++.|.. +-.+.- ..+..+. ++...+.| +|.|
T Consensus 88 gad~v~vH~~q~~---------------~d~~~~~~~~i~~~g~~-iGls~~--~~t~~~~----~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 88 GASIFTFHIEQAS---------------TIHLHRLIQQIKSAGMK-AGVVLN--PGTPVEA----VEPVVEKGLVDMVLV 145 (229)
T ss_pred CCCEEEEeecccc---------------chhHHHHHHHHHHCCCe-EEEEEC--CCCCHHH----HHHHHhccCCCEEEE
Confidence 88888443320 1 12345678888888864 444331 0133333 33444453 8876
Q ss_pred --eecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 249 --NIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 249 --~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
..+.+.|-..|....+.++.+++..++ ++|.+ |-|.-..|.-..+++||+.|
T Consensus 146 ~~v~pg~~~~~~~~~~~~~i~~~~~~~~~---~~I~a----~GGI~~e~i~~l~~aGad~v 199 (229)
T PLN02334 146 MSVEPGFGGQSFIPSMMDKVRALRKKYPE---LDIEV----DGGVGPSTIDKAAEAGANVI 199 (229)
T ss_pred EEEecCCCccccCHHHHHHHHHHHHhCCC---CcEEE----eCCCCHHHHHHHHHcCCCEE
Confidence 334455544556666777888877553 33433 46777789999999999987
No 315
>PRK08227 autoinducer 2 aldolase; Validated
Probab=82.00 E-value=37 Score=35.54 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=77.3
Q ss_pred hHHHHHHHHhcCCCCE--EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC-CCCHHHHHHHH
Q 007056 161 DIKTAWEAVKYAKRPR--IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEIL 237 (620)
Q Consensus 161 dI~~a~eal~~ag~~~--v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~-r~d~e~l~~~~ 237 (620)
+++.|++. |.+. +++|.. |+ ...+.++.+.+.++.|.+.|+..+.+.|.-.. ..+++++.-.+
T Consensus 99 sVeeAvrl----GAdAV~~~v~~G-s~---------~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aa 164 (264)
T PRK08227 99 DMEDAVRL----NACAVAAQVFIG-SE---------YEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLAT 164 (264)
T ss_pred cHHHHHHC----CCCEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHH
Confidence 46666664 5554 556655 32 23578899999999999999975554443111 23567888888
Q ss_pred HHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEec--C-CCcchHHHHHHHHHHhcCcEEe
Q 007056 238 GEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC--Q-NDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 238 ~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~--H-ND~GlAvANslaAv~aGA~~Vd 308 (620)
+.+.++|||.|-..=| .+.+.+.++ ..| +|+-+=. . +|. -.+.-...|+++||..|.
T Consensus 165 RiaaELGADiVK~~y~-----~~~f~~vv~----a~~----vPVviaGG~k~~~~-~~L~~v~~ai~aGa~Gv~ 224 (264)
T PRK08227 165 RIAAEMGAQIIKTYYV-----EEGFERITA----GCP----VPIVIAGGKKLPER-DALEMCYQAIDEGASGVD 224 (264)
T ss_pred HHHHHHcCCEEecCCC-----HHHHHHHHH----cCC----CcEEEeCCCCCCHH-HHHHHHHHHHHcCCceee
Confidence 9999999999886544 144555555 332 2333321 2 332 257888889999998874
No 316
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=81.97 E-value=40 Score=33.72 Aligned_cols=174 Identities=18% Similarity=0.121 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccch-hhHHHHHHHHhcCCC
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAWEAVKYAKR 174 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~eal~~ag~ 174 (620)
+.++-+++++.+.+. ++.||+|+|-.-..-.+.++.|.+.. . +.+.-+-+... +-.....+.....|+
T Consensus 9 ~~~~a~~~~~~~~~~-v~~iKig~~l~~~~G~~~v~~l~~~~-~---------~v~lD~K~~Dig~t~~~~~~~~~~~ga 77 (213)
T TIGR01740 9 TKDEALDLADSLGPE-IEVIKVGIDLLLDGGDKIIDELAKLN-K---------LIFLDLKFADIPNTVKLQYESKIKQGA 77 (213)
T ss_pred CHHHHHHHHHhcCCc-CcEEEECHHHHHhcCHHHHHHHHHcC-C---------CEEEEEeecchHHHHHHHHHHHHhcCC
Confidence 456666666555332 88999998643222236777777631 1 23333322211 112234444556788
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE--E-EE-cCC--CCCCCCH-HHHHHHHHHHHHcCCcE
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD--V-EF-SPE--DAGRSDR-KFLYEILGEVIKVGATT 247 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~--V-~f-~~e--d~~r~d~-e~l~~~~~~~~~aGa~~ 247 (620)
+.+.+..... .+++..+++.+++.|..- | .. ++. +. .... +.+.++++.+.+.|.+.
T Consensus 78 d~vTvh~~~g---------------~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~-~~~~~~~v~~~a~~~~~~g~~g 141 (213)
T TIGR01740 78 DMVNVHGVAG---------------SESVEAAKEAASEGGRGLLAVTELTSMGSLDY-GEDTMEKVLEYAKEAKAFGLDG 141 (213)
T ss_pred CEEEEcCCCC---------------HHHHHHHHHHhhcCCCeEEEEEcCCCCChhhh-CcCHHHHHHHHHHHhhhcCCeE
Confidence 8876654332 234556677777766421 1 11 221 11 2222 56667777776667654
Q ss_pred EeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecC---CCcchHHHHHHHHHHhcCcEE
Q 007056 248 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQ---NDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 248 I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~H---ND~GlAvANslaAv~aGA~~V 307 (620)
+. +.|+++..+ |+..++..-+.=|+-.. .+----++|.-.+.++||+.+
T Consensus 142 ~v-------~~~~~~~~i----r~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~i 193 (213)
T TIGR01740 142 PV-------CSAEEAKEI----RKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVI 193 (213)
T ss_pred EE-------eCHHHHHHH----HHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence 42 456655443 33222100111233333 222344678889999999976
No 317
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=81.84 E-value=60 Score=32.53 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhHcCCCEEEEec----CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 98 KEKLDIARQLAKLGVDIIEAGF----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvGf----P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.+=+++++.+.+.|++.|-+-- ....+.+++.++++++... .|.+.+-+-...+|+++++++ |
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~---------~pv~~~GGI~~~ed~~~~~~~----G 96 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVD---------IPVQVGGGIRSLETVEALLDA----G 96 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCC---------CCEEEcCCcCCHHHHHHHHHc----C
Confidence 3668899999999999888843 2223456788888887632 133444333466777766654 7
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC------CCCC-CCHHHHHHHHHHHHHcCCc
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE------DAGR-SDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e------d~~r-~d~e~l~~~~~~~~~aGa~ 246 (620)
++.|.+ .+.- + +..+.+.+.++...+. + .+.++.- .... .....+.++++.+.+.|++
T Consensus 97 a~~vil--g~~~-l----------~~~~~l~ei~~~~~~~-i-~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 97 VSRVII--GTAA-V----------KNPELVKEACKKFPGK-I-VVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred CCEEEE--CchH-H----------hCHHHHHHHHHHhCCC-c-eeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCC
Confidence 777632 2211 1 1112233444433221 1 1222210 1110 0112345677888889999
Q ss_pred EEeecCC--ccccCHHHHHHHHHHHHHhCC
Q 007056 247 TLNIPDT--VGITMPTEFGKLIADIKANTP 274 (620)
Q Consensus 247 ~I~L~DT--vG~~~P~~v~~li~~l~~~~~ 274 (620)
.|.+-|. .|...-. -.++++.+++..+
T Consensus 162 ~ii~~~~~~~g~~~G~-d~~~i~~l~~~~~ 190 (233)
T PRK00748 162 AIIYTDISRDGTLSGP-NVEATRELAAAVP 190 (233)
T ss_pred EEEEeeecCcCCcCCC-CHHHHHHHHHhCC
Confidence 6665543 2333221 1356666666553
No 318
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=81.81 E-value=47 Score=31.28 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 232 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
.+...++.+.++|++.|.|....+.. |....++++.+++.+++. .+.+.+|.+.+.-.+. ..+.|++.|...-
T Consensus 72 ~~~~~a~~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~ 144 (200)
T cd04722 72 AVDIAAAAARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDV-KVVVKLSPTGELAAAA-----AEEAGVDEVGLGN 144 (200)
T ss_pred hhhHHHHHHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCc-eEEEEECCCCccchhh-----HHHcCCCEEEEcC
Confidence 33333677888999999999998865 888999999999987532 2445555554433221 5678999986654
Q ss_pred cc
Q 007056 312 NG 313 (620)
Q Consensus 312 ~G 313 (620)
..
T Consensus 145 ~~ 146 (200)
T cd04722 145 GG 146 (200)
T ss_pred Cc
Confidence 43
No 319
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=81.50 E-value=30 Score=37.93 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHc-CC-cEEeecCCccccCHHHHH
Q 007056 202 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GA-TTLNIPDTVGITMPTEFG 263 (620)
Q Consensus 202 ~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a-Ga-~~I~L~DTvG~~~P~~v~ 263 (620)
.+.+.++.+.+.|...+.++- ..+...|+.+.++++.+.+. +. -.+-.=|+.|.++-+.+.
T Consensus 146 ~l~~~~~~~~~~Ga~~I~l~D-T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~la 208 (378)
T PRK11858 146 FLIEFAKAAEEAGADRVRFCD-TVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALA 208 (378)
T ss_pred HHHHHHHHHHhCCCCEEEEec-cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHH
Confidence 344455555666765444432 24566677777777666543 22 234444777776555333
No 320
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=81.50 E-value=51 Score=31.51 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCCccccC---HHHHHHHHHHHHHhC-CCCCceeEEEecCCCcchHHHH--HHHHHHhc
Q 007056 230 RKFLYEILGEVIKVGATTLNIPDTVGITM---PTEFGKLIADIKANT-PGIENVVISTHCQNDLGLSTAN--TIAGACAG 303 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~DTvG~~~---P~~v~~li~~l~~~~-~~~~~v~i~~H~HND~GlAvAN--slaAv~aG 303 (620)
.+...+.++.+.++||+.+.+.-..+... ++++.+.++.+.+.. .+.+ +.+..-.+.......-. +..+.+.|
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p-v~iy~~p~~~~~~~~~~~~~~~~~~~g 142 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLP-LKVILETRGLKTADEIAKAARIAAEAG 142 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCce-EEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67788888999999999988876666544 477888888888764 2221 33333333332222211 12345789
Q ss_pred CcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 304 ARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 304 A~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
++.|..+.... .|+.+++.+....+
T Consensus 143 ~~~iK~~~~~~---~~~~~~~~~~~i~~ 167 (201)
T cd00945 143 ADFIKTSTGFG---GGGATVEDVKLMKE 167 (201)
T ss_pred CCEEEeCCCCC---CCCCCHHHHHHHHH
Confidence 99998776432 35566666554443
No 321
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=81.41 E-value=14 Score=38.96 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC---CcEEeecCCc--------cccCHHHHHHHHHHHHH
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTV--------GITMPTEFGKLIADIKA 271 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG---a~~I~L~DTv--------G~~~P~~v~~li~~l~~ 271 (620)
..++|+.++..|.. +... .+|=....+..+.+.+..+| ..++.|.|++ -...++.+.+.|+.+|+
T Consensus 110 T~~~V~~~~~~~~~-~~I~---~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~ 185 (284)
T PRK06096 110 LAQMLALLRERYPD-GNIA---CTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRR 185 (284)
T ss_pred HHHHHHHHHhhCCC-cEEE---ecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHH
Confidence 44666667665543 3332 22444455667777777776 4789999998 11123458889999999
Q ss_pred hCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhcc---ccccCccccCCChh
Q 007056 272 NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG---EHILGGLYTGINTR 348 (620)
Q Consensus 272 ~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~---~~~~~G~~t~idl~ 348 (620)
..|.. .+.+++ - -+.-+..|+++||+.|.. .|-+.|++-.+..... ....-...-||+++
T Consensus 186 ~~~~~-kIeVEv--~-----tleqa~ea~~agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ 248 (284)
T PRK06096 186 HAPEK-KIVVEA--D-----TPKEAIAALRAQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLN 248 (284)
T ss_pred hCCCC-CEEEEC--C-----CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHH
Confidence 88753 255554 3 366678899999999987 7888888877666431 11111345689988
Q ss_pred hHHHHH
Q 007056 349 HIVMAS 354 (620)
Q Consensus 349 ~L~~~s 354 (620)
.+.+.+
T Consensus 249 ni~~yA 254 (284)
T PRK06096 249 TLKNYA 254 (284)
T ss_pred HHHHHH
Confidence 877666
No 322
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=81.37 E-value=16 Score=37.14 Aligned_cols=95 Identities=23% Similarity=0.257 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcE--EeecCCccccCHHH-H-HHHHHHHHHhCCCCCceeEEEecC-CCcchHHHHHHHHHH
Q 007056 227 RSDRKFLYEILGEVIKVGATT--LNIPDTVGITMPTE-F-GKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGAC 301 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~--I~L~DTvG~~~P~~-v-~~li~~l~~~~~~~~~v~i~~H~H-ND~GlAvANslaAv~ 301 (620)
-.|+..+.+-++.+.+.|++. +-+-| |...|+- + .+.++++++..| ++++.+|.| ++-...+ ....+
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~H~DimD--g~fvpn~~~G~~~v~~lr~~~~---~~~lDvHLm~~~p~~~i---~~~~~ 86 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWLHVDVMD--GHFVPNLSFGPPVVKSLRKHLP---NTFLDCHLMVSNPEKWV---DDFAK 86 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEeccc--CccCCCcCcCHHHHHHHHhcCC---CCCEEEEECCCCHHHHH---HHHHH
Confidence 356667777777777778765 44445 5566652 2 257888888766 377999999 4433322 56678
Q ss_pred hcCcEEeeccccccCCcCcccHHHHHHHHHhcc
Q 007056 302 AGARQVEVTINGIGERAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 302 aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~ 334 (620)
+||++| |+-+ | ++...+.+.+..++..|
T Consensus 87 ~Gad~i--tvH~--e-a~~~~~~~~l~~ik~~G 114 (228)
T PTZ00170 87 AGASQF--TFHI--E-ATEDDPKAVARKIREAG 114 (228)
T ss_pred cCCCEE--EEec--c-CCchHHHHHHHHHHHCC
Confidence 899988 4443 2 12222667777777654
No 323
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=81.37 E-value=7.5 Score=41.23 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCcc-----------ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHH
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT 296 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTvG-----------~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANs 296 (620)
.+++.+.+.++...+.|++.|-+.-+-+ ...|+++.++++..++. ++++.+|++.+ ...
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-----g~~v~~H~~~~-----~~i 186 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-----GLYVAAHAYGA-----EAI 186 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-----CCEEEEEeCCH-----HHH
Confidence 3455666666666666766665443321 46788899988888874 36789999865 345
Q ss_pred HHHHHhcCcEEe
Q 007056 297 IAGACAGARQVE 308 (620)
Q Consensus 297 laAv~aGA~~Vd 308 (620)
..++++|++.|+
T Consensus 187 ~~~l~~G~~~i~ 198 (342)
T cd01299 187 RRAIRAGVDTIE 198 (342)
T ss_pred HHHHHcCCCEEe
Confidence 567788988763
No 324
>PRK07360 FO synthase subunit 2; Reviewed
Probab=81.28 E-value=10 Score=41.35 Aligned_cols=104 Identities=21% Similarity=0.153 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccC--HHHHHHHHHHHHHhCCCCCceeEEEec---------CCCcchH
Q 007056 224 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITM--PTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLS 292 (620)
Q Consensus 224 d~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~--P~~v~~li~~l~~~~~~~~~v~i~~H~---------HND~GlA 292 (620)
..++.++|.+.+.++.+.+.|+.++.|..-.+-.. ++.+.++++.+++.+|+ +.+|+ -+..|+-
T Consensus 87 ~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~-----i~i~a~s~~ei~~~~~~~G~~ 161 (371)
T PRK07360 87 GAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD-----IHLHAFSPMEVYFAAREDGLS 161 (371)
T ss_pred CCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC-----cceeeCCHHHHHHHHhhcCCC
Confidence 34467899999999999999999999983222222 45688999999988764 33342 3367887
Q ss_pred HHHHHHHH-HhcCcEEeeccccccC-------CcCcccHHHHHHHHHh
Q 007056 293 TANTIAGA-CAGARQVEVTINGIGE-------RAGNASLEEVVMAFKC 332 (620)
Q Consensus 293 vANslaAv-~aGA~~Vd~Ti~GlGE-------RaGNa~lEevv~~L~~ 332 (620)
.-..+..+ +||++.+..|-.-+.- ..+..++++.+..++.
T Consensus 162 ~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~ 209 (371)
T PRK07360 162 YEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKT 209 (371)
T ss_pred HHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHH
Confidence 77765544 6899998633221110 2455666666555543
No 325
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=81.15 E-value=11 Score=38.85 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCC----------------CCh--hHHHHHHHHHHHhcccccccCCccceEEee
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPA----------------ASK--EDFEAVRTIAKEVGNAVDAESGYVPVICGL 154 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~----------------~s~--~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~ 154 (620)
..|+.++=.+|.+...+.|++.+---|-. +|. ..+..++.+++. + .|.|...
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~t---------g-kPvIlST 120 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKT---------G-KPVILST 120 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-----------S-EEEE-
T ss_pred hcCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHh---------C-CcEEEEC
Confidence 46899999999999999998887765510 011 134555655552 1 2788999
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCC--HHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCHH
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIATS--GIHMEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEFSPEDAGRSDRK 231 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~S--d~h~~~~l~~t~ee~l~~~~~~v~~a~-~~G~~~V~f~~ed~~r~d~e 231 (620)
+.+..++|+.|++.++..+...+.+.-.+| |...+ ..|. ..+...+ ..|+ .|-||- ++..
T Consensus 121 G~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e-~~NL----------~~i~~L~~~f~~-~vG~SD-----Ht~g 183 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPE-DVNL----------RVIPTLKERFGV-PVGYSD-----HTDG 183 (241)
T ss_dssp TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GG-G--T----------THHHHHHHHSTS-EEEEEE------SSS
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChH-HcCh----------HHHHHHHHhcCC-CEEeCC-----CCCC
Confidence 999999999999998666666665542222 22211 1111 2344444 4565 377753 1112
Q ss_pred HHHHHHHHHHHcCCcEE----ee------cCCccccCHHHHHHHHHHHHHh
Q 007056 232 FLYEILGEVIKVGATTL----NI------PDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I----~L------~DTvG~~~P~~v~~li~~l~~~ 272 (620)
.. +.-+++..||..| .| +|-.-.+.|.++.++|+.+|+.
T Consensus 184 ~~--~~~~AvalGA~vIEKHfTldr~~~g~Dh~~Sl~p~el~~lv~~ir~~ 232 (241)
T PF03102_consen 184 IE--APIAAVALGARVIEKHFTLDRNLKGPDHKFSLEPDELKQLVRDIREV 232 (241)
T ss_dssp SH--HHHHHHHTT-SEEEEEB-S-TTSCSTTGCCCB-HHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHcCCeEEEEEEECCCCCCCCChhhcCCHHHHHHHHHHHHHH
Confidence 22 3346667898543 33 5778889999999999999864
No 326
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=80.92 E-value=28 Score=37.75 Aligned_cols=140 Identities=23% Similarity=0.267 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccce--EE------eecccc-------hh
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPV--IC------GLSRCN-------ER 160 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~--i~------~~~r~~-------~~ 160 (620)
..+.-++=++.|.++|.+.+=+..| +.++.++++.|.+...-.+..|.-+... +. .--|-| ++
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~ 117 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDE 117 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHH
Confidence 3455566678889999999999887 4667788888887642211111000000 00 000222 22
Q ss_pred hHHHHHHHHhcCCCC-EEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Q 007056 161 DIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 238 (620)
Q Consensus 161 dI~~a~eal~~ag~~-~v~i~~~~Sd~h~~~~l~~-t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~ 238 (620)
.++.-+++.++.+++ ||.+-...=+-.+..+++. +.+..++-+.+.++.+.++|+..+.+|.- -+|+....+..+
T Consensus 118 ~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K---sS~v~~~i~ayr 194 (360)
T PRK00366 118 RVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK---ASDVQDLIAAYR 194 (360)
T ss_pred HHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHH
Confidence 233344555555655 4555444444555566665 77777777777888888888776666652 234444444444
Q ss_pred HH
Q 007056 239 EV 240 (620)
Q Consensus 239 ~~ 240 (620)
.+
T Consensus 195 ll 196 (360)
T PRK00366 195 LL 196 (360)
T ss_pred HH
Confidence 43
No 327
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=80.90 E-value=15 Score=37.78 Aligned_cols=127 Identities=19% Similarity=0.095 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCC-CCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 202 IARSMVKFARSLGCDDVEFSPE-DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 202 ~~~~~v~~a~~~G~~~V~f~~e-d~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
.+++-++.++++|+. |.++-. ...-.-...+.++++.+.+.|-+.|-|.|..--+.+++-.++|+.++++-- .+.
T Consensus 42 ~l~eki~la~~~~V~-v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~---~v~ 117 (237)
T TIGR03849 42 IVKEKIEMYKDYGIK-VYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGF---MVL 117 (237)
T ss_pred HHHHHHHHHHHcCCe-EeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCC---eEe
Confidence 356788899999874 555321 000112256667777888999999999999988889999999999987510 111
Q ss_pred --EEEecC-----CCcchHHHHHHHHHHhcCcEE--eec---c-ccccCCcCcccHHHHHHHHHh
Q 007056 281 --ISTHCQ-----NDLGLSTANTIAGACAGARQV--EVT---I-NGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 281 --i~~H~H-----ND~GlAvANslaAv~aGA~~V--d~T---i-~GlGERaGNa~lEevv~~L~~ 332 (620)
++.... -+...-+-..-..++|||++| ++- = -||=+..||.-...+...+..
T Consensus 118 ~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~ 182 (237)
T TIGR03849 118 SEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAEN 182 (237)
T ss_pred ccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhh
Confidence 222222 122333446667799999985 552 2 366678899888776666654
No 328
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=80.76 E-value=17 Score=38.39 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE--ecCCCC---------hhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEA--GFPAAS---------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEv--GfP~~s---------~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
.+.++-.++++.+.+.|+|.||+ |.|... -+|.+.+.++.+.+...+ . .|.++= .|....++.
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~----~Pv~vK-l~~~~~~~~ 183 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-K----IPVIAK-LTPNITDIR 183 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-C----CCeEEE-CCCCchhHH
Confidence 37889999999999999999999 456430 034456666655443221 0 122211 233444555
Q ss_pred HHHHHHhcCCCCEEEEEecCCH--------------HHHHH-HhCCCHHHHHHHHHHHHHHHHHcC---CCEEEEcCCCC
Q 007056 164 TAWEAVKYAKRPRIHTFIATSG--------------IHMEH-KLRKTKQQVVEIARSMVKFARSLG---CDDVEFSPEDA 225 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd--------------~h~~~-~l~~t~ee~l~~~~~~v~~a~~~G---~~~V~f~~ed~ 225 (620)
...+.+..+|++.|.++..... +|-.. .-+.+-........+.|..+++.- +. |.- .+
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ip-Iig---~G 259 (299)
T cd02940 184 EIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLP-ISG---IG 259 (299)
T ss_pred HHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCc-EEE---EC
Confidence 5556667789998887654432 11000 002222222333445555555432 22 221 34
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHH
Q 007056 226 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIA 267 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~ 267 (620)
+=.+.+.+.+++ .+||+.+-++=-.-.--|.-+.++.+
T Consensus 260 GI~~~~da~~~l----~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 260 GIESWEDAAEFL----LLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CCCCHHHHHHHH----HcCCChheEceeecccCCcHHHHHhh
Confidence 456666665544 38998888775554445665655544
No 329
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=80.66 E-value=17 Score=38.19 Aligned_cols=129 Identities=11% Similarity=0.126 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC---CcEEeecCC----------ccccCHHHHHHHHHHH
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDT----------VGITMPTEFGKLIADI 269 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG---a~~I~L~DT----------vG~~~P~~v~~li~~l 269 (620)
..++|+.++..+.. +..-+ +|=....+..+.+.+..+| ..++.|.|+ .|. +..+.+.++.+
T Consensus 109 T~~~V~~~~~~~~~-~~I~~---TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~--~~~i~~av~~~ 182 (277)
T TIGR01334 109 THKMVTLAKKISPM-AVVAC---TRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLND--NFDWGGAIGRL 182 (277)
T ss_pred HHHHHHHHHhcCCC-CEEEe---cCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCC--cccHHHHHHHH
Confidence 45666777765433 33321 3444445666777777776 478999999 332 24688999999
Q ss_pred HHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhcc---ccccCccccCCC
Q 007056 270 KANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG---EHILGGLYTGIN 346 (620)
Q Consensus 270 ~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~---~~~~~G~~t~id 346 (620)
|+..|+. .+.+++ . -..-+..|+++||+.|..= |.+.|++........ ....-...-||+
T Consensus 183 r~~~~~~-kIeVEv--~-----tleea~ea~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGGI~ 245 (277)
T TIGR01334 183 KQTAPER-KITVEA--D-----TIEQALTVLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGGIN 245 (277)
T ss_pred HHhCCCC-CEEEEC--C-----CHHHHHHHHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 9988753 355554 3 4677889999999998665 888888877776541 111113456899
Q ss_pred hhhHHHHH
Q 007056 347 TRHIVMAS 354 (620)
Q Consensus 347 l~~L~~~s 354 (620)
++.+.+.+
T Consensus 246 ~~ni~~ya 253 (277)
T TIGR01334 246 PENIADYI 253 (277)
T ss_pred HHHHHHHH
Confidence 88877665
No 330
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=80.62 E-value=44 Score=35.94 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=91.9
Q ss_pred ceEEEeCCCcccCCCCCCCCCHHHHHHHHHHHhHcC-CCEEEEec-CCCChhHHHHHHHHHHHhcccccccCCccceEEe
Q 007056 76 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLG-VDIIEAGF-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 76 ~V~I~DtTLRDG~Qs~g~~fs~~~Kl~Ia~~L~~~G-vd~IEvGf-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
-|+|+-. |.--...-++.+....|++.|.+.+ |..+=+-+ |--- +-|.++++.+.+.... +-.-.|
T Consensus 103 ~vkIFTS----GSFLD~~EVP~e~R~~Il~~is~~~~v~~vvvESRpE~I--~eE~l~e~~~il~gk~------~EvaIG 170 (358)
T COG1244 103 VVKIFTS----GSFLDPEEVPREARRYILERISENDNVKEVVVESRPEFI--REERLEEITEILEGKI------VEVAIG 170 (358)
T ss_pred eEEEEcc----cccCChhhCCHHHHHHHHHHHhhccceeEEEeecCchhc--CHHHHHHHHHhhCCce------EEEEEe
Confidence 4777643 3333344567788888888888876 66655532 2111 2356667666533221 112234
Q ss_pred ecccc-------------hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Q 007056 154 LSRCN-------------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF 220 (620)
Q Consensus 154 ~~r~~-------------~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f 220 (620)
|--++ .+|..+|.+.++.+|+. +..|+-.-+.+ .|..|.++.+...++ +..-|++.|.+
T Consensus 171 LETanD~ire~sINKGftF~df~~A~~~ir~~g~~-vktYlllKP~F------lSE~eAI~D~i~Si~-~~~~~~d~iSi 242 (358)
T COG1244 171 LETANDKIREDSINKGFTFEDFVRAAEIIRNYGAK-VKTYLLLKPPF------LSEKEAIEDVISSIV-AAKPGTDTISI 242 (358)
T ss_pred cccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCc-eeEEEEecccc------cChHHHHHHHHHHHH-HhccCCCeEEe
Confidence 44443 23445666667766654 33443333334 356677888888888 44456767777
Q ss_pred cCCCCCC------------CCHHHHH---HHHHHHHHcCCcEEeecCCccccCH
Q 007056 221 SPEDAGR------------SDRKFLY---EILGEVIKVGATTLNIPDTVGITMP 259 (620)
Q Consensus 221 ~~ed~~r------------~d~e~l~---~~~~~~~~aGa~~I~L~DTvG~~~P 259 (620)
+|-...+ +.|-++. ++++.+.+.++....++|++|...+
T Consensus 243 nptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~~~i~sdp~G~gs~ 296 (358)
T COG1244 243 NPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPMLRILSDPVGAGSD 296 (358)
T ss_pred cccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCCCceeecCCCCCCC
Confidence 7753222 2333333 4444555556666778888886654
No 331
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=80.55 E-value=33 Score=35.80 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE----cCC--CCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHH
Q 007056 196 KQQVVEIARSMVKFARSLGCDDVEF----SPE--DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 269 (620)
Q Consensus 196 ~ee~l~~~~~~v~~a~~~G~~~V~f----~~e--d~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l 269 (620)
..|.++++.++++.|.++|+..|.+ ++- |....+++.+.-..+.+.+.|||+|-.. =...|+.|.+.|+..
T Consensus 125 e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~---ytg~~e~F~~vv~~~ 201 (265)
T COG1830 125 EREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK---YTGDPESFRRVVAAC 201 (265)
T ss_pred hHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec---CCCChHHHHHHHHhC
Confidence 3578999999999999999975543 221 2225778888888889999999988732 223456777776653
Q ss_pred HHhCCCCCceeEEEecC-CCcchHHHHHHHHHHhcCcEE
Q 007056 270 KANTPGIENVVISTHCQ-NDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 270 ~~~~~~~~~v~i~~H~H-ND~GlAvANslaAv~aGA~~V 307 (620)
. .| +.+.==.- ++.--.+.-...|+++||..+
T Consensus 202 ~--vp----VviaGG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 202 G--VP----VVIAGGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred C--CC----EEEeCCCCCCChHHHHHHHHHHHHccCcch
Confidence 3 22 33321111 234455677777888887655
No 332
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=80.52 E-value=11 Score=39.41 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHHHHHHHHH
Q 007056 226 GRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGAC 301 (620)
Q Consensus 226 ~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvANslaAv~ 301 (620)
+..|.+-+.+.++.+.+.|++.|.++-|.| .++.+|-.++++.+.+..++ +++|-+++ ++..--++.-+..|-+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG--RVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT--SSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC--ceEEEecCcchhHHHHHHHHHHHhh
Confidence 578999999999999999999999999987 45788999999998887765 45555554 6678888999999999
Q ss_pred hcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 302 AGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 302 aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
+||+.+-.+-=-.. ..+-++++..++.
T Consensus 95 ~Gad~v~v~~P~~~----~~s~~~l~~y~~~ 121 (289)
T PF00701_consen 95 AGADAVLVIPPYYF----KPSQEELIDYFRA 121 (289)
T ss_dssp TT-SEEEEEESTSS----SCCHHHHHHHHHH
T ss_pred cCceEEEEeccccc----cchhhHHHHHHHH
Confidence 99999876532222 2455555554443
No 333
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=80.51 E-value=54 Score=35.12 Aligned_cols=119 Identities=20% Similarity=0.188 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCH-------------------
Q 007056 199 VVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMP------------------- 259 (620)
Q Consensus 199 ~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P------------------- 259 (620)
.++++.+.|+...+.=+ .|-.+| +.+.+.++++++.++|+|-|.+--|+...+.
T Consensus 148 ~l~~l~~~vk~~~~~Pv-~vKl~P------~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG 220 (310)
T COG0167 148 LLEKLLEAVKAATKVPV-FVKLAP------NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSG 220 (310)
T ss_pred HHHHHHHHHHhcccCce-EEEeCC------CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCc
Confidence 45555555554443211 234466 6688999999999999999888887773221
Q ss_pred ----HHHHHHHHHHHHhCCCCCceeE-EEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 260 ----TEFGKLIADIKANTPGIENVVI-STHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 260 ----~~v~~li~~l~~~~~~~~~v~i-~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
..--++|+.+.+++.+ +++| ++=.=.+ .-.+++=+.|||+.|+..-.=+=+ |---.+++...|..
T Consensus 221 ~~ikp~al~~v~~l~~~~~~--~ipIIGvGGI~s----~~DA~E~i~aGA~~vQv~Tal~~~--Gp~i~~~I~~~l~~ 290 (310)
T COG0167 221 PPLKPIALRVVAELYKRLGG--DIPIIGVGGIET----GEDALEFILAGASAVQVGTALIYK--GPGIVKEIIKGLAR 290 (310)
T ss_pred ccchHHHHHHHHHHHHhcCC--CCcEEEecCcCc----HHHHHHHHHcCCchheeeeeeeee--CchHHHHHHHHHHH
Confidence 1123567777777643 2333 3221111 235778888999887754322212 23334445544444
No 334
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=80.40 E-value=25 Score=35.48 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAA 122 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~ 122 (620)
...++....++.+.+.|++.|.+-+|.+
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s 91 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVS 91 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETS
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCccc
Confidence 3445555556667778888888876653
No 335
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=80.34 E-value=19 Score=38.65 Aligned_cols=140 Identities=20% Similarity=0.272 Sum_probs=86.4
Q ss_pred HHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCCEEEEEecC
Q 007056 104 ARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIAT 183 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~ 183 (620)
+..|.++|++.+=++++-. .+...++.+++.- .|.|...+.+..++|+.|++.++..|.+-+.++--+
T Consensus 116 vd~l~~~~~~ayKIaS~E~--~~~plik~iA~~~----------kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~ 183 (347)
T COG2089 116 VDLLESLNPPAYKIASGEI--NDLPLIKYIAKKG----------KPIILSTGMATIEEIEEAVAILRENGNPDIALLHCT 183 (347)
T ss_pred HHHHHhcCCCeEEecCccc--cChHHHHHHHhcC----------CCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEec
Confidence 4444445555555443321 2457788887741 278889999999999999999999998854443222
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE----Eee------cCC
Q 007056 184 SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT----LNI------PDT 253 (620)
Q Consensus 184 Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~----I~L------~DT 253 (620)
| .+-...+++ ++..+.++....++. |-|| .+...++..++ ++..||.. ++| ||.
T Consensus 184 s------~YPap~ed~--NL~~i~~l~~~Fn~~-vGlS-----DHT~g~~a~l~--AvALGA~viEKHFtldk~~~GpD~ 247 (347)
T COG2089 184 S------AYPAPFEDV--NLKAIPKLAEAFNAI-VGLS-----DHTLGILAPLA--AVALGASVIEKHFTLDKSREGPDH 247 (347)
T ss_pred C------CCCCCHHHh--hHHHHHHHHHHhCCc-cccc-----cCccchhHHHH--HHHhcccceeeeeeecCCCCCCCc
Confidence 2 222222221 233444454555553 4443 35556665544 45678743 344 688
Q ss_pred ccccCHHHHHHHHHHHHH
Q 007056 254 VGITMPTEFGKLIADIKA 271 (620)
Q Consensus 254 vG~~~P~~v~~li~~l~~ 271 (620)
.=.+.|.++.+++..+++
T Consensus 248 ~fSldP~efk~mv~~ir~ 265 (347)
T COG2089 248 AFSLDPDEFKEMVDAIRQ 265 (347)
T ss_pred ceecCHHHHHHHHHHHHH
Confidence 888999999999999987
No 336
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=80.13 E-value=16 Score=39.22 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-CccccCHHHHHHHH--------HHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHH
Q 007056 231 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI--------ADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 301 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~D-TvG~~~P~~v~~li--------~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 301 (620)
+++.+++++.+++||+.+.+.| +.+.+.|+++.+++ +.+++..++ .++-.||.| .. +-+..+.
T Consensus 180 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~---~~ilh~cg~-~~----~~~~~~~ 251 (338)
T TIGR01464 180 DATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPN---VPVILFAKG-AG----HLLEELA 251 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEeCC-cH----HHHHHHH
Confidence 4556777777889999999999 67788998887655 344433222 345334433 22 3344444
Q ss_pred -hcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 302 -AGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 302 -aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
.|++.+.. +. +.++.+....+.
T Consensus 252 ~~~~~~~s~-----d~---~~dl~e~~~~~~ 274 (338)
T TIGR01464 252 ETGADVVGL-----DW---TVDLKEARKRVG 274 (338)
T ss_pred hcCCCEEEe-----CC---CCCHHHHHHHhC
Confidence 48777633 22 256766654443
No 337
>PLN02433 uroporphyrinogen decarboxylase
Probab=80.09 E-value=15 Score=39.70 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-CccccCHHHHHHHH--------HHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHH
Q 007056 231 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI--------ADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 301 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~D-TvG~~~P~~v~~li--------~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~ 301 (620)
+.+.+++++.+++||+.+.+.| +.|.+.|+++.+++ +.+++..+ .+++.+|.+.+. ..--.-.+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~---~~~~ilh~cG~~----~~~~~~~~ 251 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHP---DVPLILYANGSG----GLLERLAG 251 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEeCCCH----HHHHHHHh
Confidence 4455666777789999999998 55566777776554 34443322 256788887763 11222334
Q ss_pred hcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 302 AGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 302 aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
.|++.+. ++.+ .++++....+.
T Consensus 252 ~~~~~i~-----~d~~---~dl~e~~~~~g 273 (345)
T PLN02433 252 TGVDVIG-----LDWT---VDMADARRRLG 273 (345)
T ss_pred cCCCEEE-----cCCC---CCHHHHHHHhC
Confidence 5877654 2222 67777655443
No 338
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.03 E-value=65 Score=31.84 Aligned_cols=174 Identities=15% Similarity=0.086 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEec---CC--CChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGF---PA--ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 168 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGf---P~--~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 168 (620)
.+....-.+.++.+.+.|++.|+++. +. .++--.+.++.+.+... . .+ .+.-++. |...-++.
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~-~-----~~--~v~l~v~----d~~~~i~~ 79 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK-L-----PL--DVHLMVE----NPDRYVPD 79 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC-C-----cE--EEEeeeC----CHHHHHHH
Confidence 34555566788999999999999953 11 11223466666665321 0 00 1111111 22222333
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
+..+|.+.|.+....+ +...+.++.++..|+. +-+... ..++.+.+.++. .+++.|
T Consensus 80 ~~~~g~d~v~vh~~~~----------------~~~~~~~~~~~~~~~~-~g~~~~--~~t~~e~~~~~~-----~~~d~i 135 (220)
T PRK05581 80 FAKAGADIITFHVEAS----------------EHIHRLLQLIKSAGIK-AGLVLN--PATPLEPLEDVL-----DLLDLV 135 (220)
T ss_pred HHHcCCCEEEEeeccc----------------hhHHHHHHHHHHcCCE-EEEEEC--CCCCHHHHHHHH-----hhCCEE
Confidence 3456889866544322 2233458888888874 444331 124444443332 234543
Q ss_pred ee----cCCccccCHHHHHHHHHHHHHhCCCCC-ceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 249 NI----PDTVGITMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 249 ~L----~DTvG~~~P~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+ +-+.|...++...+.++.+++..+... +.++. =+.|.-..|.-...++|++.|
T Consensus 136 ~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~----v~GGI~~~nv~~l~~~GaD~v 195 (220)
T PRK05581 136 LLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIE----VDGGINADNIKECAEAGADVF 195 (220)
T ss_pred EEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEE----EECCCCHHHHHHHHHcCCCEE
Confidence 33 334454445566667777765543100 01121 146888888888888998875
No 339
>PRK00208 thiG thiazole synthase; Reviewed
Probab=79.98 E-value=14 Score=38.27 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=88.4
Q ss_pred HHHHHHhHcCCCEEEEecCCCCh--hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHH---HHHHhcCCCCE
Q 007056 102 DIARQLAKLGVDIIEAGFPAASK--EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA---WEAVKYAKRPR 176 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGfP~~s~--~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a---~eal~~ag~~~ 176 (620)
.+.+.|...|-+.+=+.--.... ..-.++..|.. .+- .+.|+.. -|+..++-|..| -|+ .+.++
T Consensus 25 ~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~-~~~------~~lpNTa-G~~ta~eAv~~a~lare~---~~~~~ 93 (250)
T PRK00208 25 VMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPP-LGV------TLLPNTA-GCRTAEEAVRTARLAREA---LGTNW 93 (250)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccc-cCC------EECCCCC-CCCCHHHHHHHHHHHHHH---hCCCe
Confidence 45677788898888876422111 11122222211 010 1234433 344444444433 232 36678
Q ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCCEEE-EcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec-
Q 007056 177 IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL---GCDDVE-FSPEDAGRSDRKFLYEILGEVIKVGATTLNIP- 251 (620)
Q Consensus 177 v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~---G~~~V~-f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~- 251 (620)
|.+-+=..+ ...+..+.+.++.++.+ |+. |. |+..|- ..++++.++|++.| .|
T Consensus 94 iKlEVi~d~-----------~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~---------~~ak~l~~~G~~~v-mPl 151 (250)
T PRK00208 94 IKLEVIGDD-----------KTLLPDPIETLKAAEILVKEGFV-VLPYCTDDP---------VLAKRLEEAGCAAV-MPL 151 (250)
T ss_pred EEEEEecCC-----------CCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCH---------HHHHHHHHcCCCEe-CCC
Confidence 877543322 11234455666666666 986 55 766432 56777888899988 45
Q ss_pred -CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 252 -DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 252 -DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
...|...+-.-.++++.+++.. +. .+.++-+.|. -.-+..|++.||+.|
T Consensus 152 g~pIGsg~gi~~~~~i~~i~e~~-~v-pVIveaGI~t-----peda~~AmelGAdgV 201 (250)
T PRK00208 152 GAPIGSGLGLLNPYNLRIIIEQA-DV-PVIVDAGIGT-----PSDAAQAMELGADAV 201 (250)
T ss_pred CcCCCCCCCCCCHHHHHHHHHhc-CC-eEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 5555444333345577777653 22 1444433332 346778889999886
No 340
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=79.89 E-value=52 Score=30.67 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhHcCCCEEEEe--cCCCChhHHHHHHHHHHHhcccccccCCccceEEeeccc---chhhHHHHHHHHhcC
Q 007056 98 KEKLDIARQLAKLGVDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC---NERDIKTAWEAVKYA 172 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvG--fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~---~~~dI~~a~eal~~a 172 (620)
++..+++......|+..|-.+ .|...+.-.+.++.+.+... ++ .+...+.. .++.+ +.+..+
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~i~~~~~~~~-------~~--~~~i~T~~~~~~~~~~----~~l~~~ 97 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELP-------GF--EISIETNGTLLTEELL----KELKEL 97 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCcCCccHhHHHHHHHHHhhCC-------Cc--eEEEEcCcccCCHHHH----HHHHhC
Confidence 677888888888899888885 46555533455666655421 11 22233332 23334 444556
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCCHHHHHHHHHHHHHcC-Cc
Q 007056 173 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSDRKFLYEILGEVIKVG-AT 246 (620)
Q Consensus 173 g~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-d~~r~d~e~l~~~~~~~~~aG-a~ 246 (620)
|...|.+.+-+.+-.....++. ....+++..+.++.+++.|.. +..... .....+.+.+.+.++.+.+.+ ++
T Consensus 98 g~~~i~i~le~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~ 171 (204)
T cd01335 98 GLDGVGVSLDSGDEEVADKIRG-SGESFKERLEALKELREAGLG-LSTTLLVGLGDEDEEDDLEELELLAEFRSPD 171 (204)
T ss_pred CCceEEEEcccCCHHHHHHHhc-CCcCHHHHHHHHHHHHHcCCC-ceEEEEEecCCChhHHHHHHHHHHHhhcCcc
Confidence 8888888777666555555431 122355666777777777764 322111 111222466777777777765 44
No 341
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.83 E-value=27 Score=37.47 Aligned_cols=132 Identities=16% Similarity=0.084 Sum_probs=80.6
Q ss_pred HHHhcCCCCEEEEEecC--------CH--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---EEEEcCCC--CCCCCH
Q 007056 167 EAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPED--AGRSDR 230 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~--------Sd--~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~---~V~f~~ed--~~r~d~ 230 (620)
+..+.+|.+.|.+-.+- |+ .++...+|-+.++-.+.+.+.++.+|+. |-+ .|.+++++ ....++
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH
Confidence 33456899988775432 22 2444567778888888888888888875 322 24556643 123468
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCccccC--------HHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHh
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGITM--------PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 302 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~~~--------P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~a 302 (620)
+...++++.+.+.|++.|.+. .|..+ |....+..+.+++.++ +||.. .-+- .....+..+++.
T Consensus 241 ~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~----iPVi~-~G~i--~t~~~a~~~l~~ 311 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAG----IPVIA-VGLI--TDPEQAEAILES 311 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCC----CCEEE-eCCC--CCHHHHHHHHHc
Confidence 888999999999999988863 22111 2223456677777763 44432 1111 124556667777
Q ss_pred c-CcEE
Q 007056 303 G-ARQV 307 (620)
Q Consensus 303 G-A~~V 307 (620)
| |+.|
T Consensus 312 g~aD~V 317 (336)
T cd02932 312 GRADLV 317 (336)
T ss_pred CCCCee
Confidence 7 5554
No 342
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=79.77 E-value=49 Score=35.90 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=62.2
Q ss_pred chhhH-HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHH
Q 007056 158 NERDI-KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 235 (620)
Q Consensus 158 ~~~dI-~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~ 235 (620)
+++.+ +.-++.++.+|+.+|++-+=+.+-.+...+|+. ...+.+.++++.+++.|+..|.++...+ ..-+.+.+.+
T Consensus 97 nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~ 174 (353)
T PRK05904 97 NPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDE 174 (353)
T ss_pred ccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHH
Confidence 44444 234677788899999997766666777777774 2355777889999999875344433222 1356677888
Q ss_pred HHHHHHHcCCcEEee
Q 007056 236 ILGEVIKVGATTLNI 250 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L 250 (620)
.++.+.+.+++.|.+
T Consensus 175 tl~~~~~l~p~~is~ 189 (353)
T PRK05904 175 VFNFILKHKINHISF 189 (353)
T ss_pred HHHHHHhcCCCEEEE
Confidence 888888889876653
No 343
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.68 E-value=35 Score=36.56 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEec--CCCChhH-----HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKED-----FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGf--P~~s~~d-----~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+.++-.++++.+.++|+|.||+-. |...+.. .+.+.++.+.+...+ -.|.++=+. ....++....+
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-----~iPv~vKl~-p~~~~~~~~a~ 182 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-----TIPVAVKLS-PFFSALAHMAK 182 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-----CCCEEEEcC-CCccCHHHHHH
Confidence 4678889999999999999999964 2222211 123333333332211 023332222 23345665666
Q ss_pred HHhcCCCCEEEEEecCCH--HHHH-----HHhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCHHHHHHHHHH
Q 007056 168 AVKYAKRPRIHTFIATSG--IHME-----HKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYEILGE 239 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd--~h~~-----~~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~r~d~e~l~~~~~~ 239 (620)
++..+|++.|.+...... ++.+ ...+.|-........+.++.+++. .+. |. . .++=.+.+.+.+++
T Consensus 183 ~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip-Ii-g--~GGI~s~~Da~e~l-- 256 (325)
T cd04739 183 QLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS-LA-A--SGGVHDAEDVVKYL-- 256 (325)
T ss_pred HHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC-EE-E--ECCCCCHHHHHHHH--
Confidence 677789998887665311 1110 011122222333445556655543 232 22 1 24556667666655
Q ss_pred HHHcCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 240 VIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 240 ~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
.+||+.+-++-.+=.--|.-+.++.+.|.+.
T Consensus 257 --~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~ 287 (325)
T cd04739 257 --LAGADVVMTTSALLRHGPDYIGTLLAGLEAW 287 (325)
T ss_pred --HcCCCeeEEehhhhhcCchHHHHHHHHHHHH
Confidence 2799999988443222377777777776653
No 344
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=79.65 E-value=4.6 Score=43.47 Aligned_cols=116 Identities=18% Similarity=0.156 Sum_probs=76.1
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc--CCCCCCCCHHHHHHHHHHHH-HcCCcEEeecCCccccCHHHHHHHH
Q 007056 190 HKLRKTKQQVVEIARSMVKFARSLGCDDVEFS--PEDAGRSDRKFLYEILGEVI-KVGATTLNIPDTVGITMPTEFGKLI 266 (620)
Q Consensus 190 ~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~--~ed~~r~d~e~l~~~~~~~~-~aGa~~I~L~DTvG~~~P~~v~~li 266 (620)
....++.+++++ .++.|++.|....++. ..+ ...+.+++.++++.+. +.| +.+|=|.|.+++++..++-
T Consensus 80 ~~~l~~~eeIle----~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~---le~c~slG~l~~eq~~~L~ 151 (335)
T COG0502 80 ARKLMEVEEILE----AAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELG---LEVCASLGMLTEEQAEKLA 151 (335)
T ss_pred hhhcCCHHHHHH----HHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcC---cHHhhccCCCCHHHHHHHH
Confidence 334566666555 5677788884333332 222 2378899999999998 556 7788899999999988887
Q ss_pred HHHHHhCCC-------CCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccC
Q 007056 267 ADIKANTPG-------IENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 316 (620)
Q Consensus 267 ~~l~~~~~~-------~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGE 316 (620)
..=...+-. .-+-.+.-|.+.|+=- +-..+-++|-..=.|.|.||||
T Consensus 152 ~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~---tl~~vk~~Gi~vcsGgI~GlGE 205 (335)
T COG0502 152 DAGVDRYNHNLETSPEFYENIITTRTYEDRLN---TLENVREAGIEVCSGGIVGLGE 205 (335)
T ss_pred HcChhheecccccCHHHHcccCCCCCHHHHHH---HHHHHHHcCCccccceEecCCC
Confidence 653222110 0012345667766632 2334556799999999999998
No 345
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=79.64 E-value=51 Score=34.61 Aligned_cols=142 Identities=20% Similarity=0.187 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHhHcC-CCEEEE--ecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 93 ATLTSKEKLDIARQLAKLG-VDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~G-vd~IEv--GfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
..+++++-+++...+.++| +..+-. |=|...++-++.++.+.+.. +....+...+-... +..++.+
T Consensus 46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d~~ei~~~~~~~~--------~~~~~~~TnG~~~~---~~~~~~l 114 (347)
T COG0535 46 GELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYARKKG--------GIRVSLSTNGTLLT---EEVLEKL 114 (347)
T ss_pred cccCHHHHHHHHHHHHHcCCeeEEEEeCCCccccccHHHHHHHHhhcC--------CeEEEEeCCCccCC---HHHHHHH
Confidence 5678888889999999999 665555 34766665566666555321 11122322220011 2233445
Q ss_pred hcCCCCEEEEEecCCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 170 KYAKRPRIHTFIATSG--IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd--~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
+.+|.+.|.+.+-..+ .|-. ..+ .+-+++++.+.++.+++.|+. +.... ..++.+.+.+.++++.+.+.|++.
T Consensus 115 ~~~g~~~v~iSid~~~~e~hd~-~rg--~~g~~~~~~~~i~~~~~~g~~-~~~~~-~v~~~n~~~l~~~~~~~~~~g~~~ 189 (347)
T COG0535 115 KEAGLDYVSISLDGLDPETHDP-IRG--VKGVFKRAVEAIKNLKEAGIL-VVINT-TVTKINYDELPEIADLAAELGVDE 189 (347)
T ss_pred HhcCCcEEEEEecCCChhhhhh-hcC--CCcHHHHHHHHHHHHHHcCCe-eeEEE-EEecCcHHHHHHHHHHHHHcCCCE
Confidence 5678888887655433 2222 222 234677888999999999974 33333 345788889999999999999876
Q ss_pred Eee
Q 007056 248 LNI 250 (620)
Q Consensus 248 I~L 250 (620)
+.+
T Consensus 190 ~~~ 192 (347)
T COG0535 190 LNV 192 (347)
T ss_pred EEE
Confidence 555
No 346
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=79.63 E-value=16 Score=37.74 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=88.2
Q ss_pred HHHHHHhHcCCCEEEEecCCCC---hhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHH---HHHHhcCCCC
Q 007056 102 DIARQLAKLGVDIIEAGFPAAS---KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA---WEAVKYAKRP 175 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGfP~~s---~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a---~eal~~ag~~ 175 (620)
.+.+.|...|-+.+=+.--... ...-.++..|... +- .+.|+..+ |+..++-|..| -|+ .+.+
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~-~~------~~lpNTaG-~~ta~eAv~~a~lare~---~~~~ 92 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKS-GY------TLLPNTAG-CRTAEEAVRTARLAREA---LGTD 92 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcccc-CC------EECCCCCC-CCCHHHHHHHHHHHHHH---hCCC
Confidence 3566778889888887642221 1111222222110 00 12344333 44444444433 232 2677
Q ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCCEEE-EcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec
Q 007056 176 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL---GCDDVE-FSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 176 ~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~---G~~~V~-f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
+|.+-+-..+ ...+....+.++.++.+ |+. |. |+..| + ..++++.++|++.| .|
T Consensus 93 ~iKlEVi~d~-----------~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd-----~----~~ar~l~~~G~~~v-mP 150 (248)
T cd04728 93 WIKLEVIGDD-----------KTLLPDPIETLKAAEILVKEGFT-VLPYCTDD-----P----VLAKRLEDAGCAAV-MP 150 (248)
T ss_pred eEEEEEecCc-----------cccccCHHHHHHHHHHHHHCCCE-EEEEeCCC-----H----HHHHHHHHcCCCEe-CC
Confidence 8887543322 12244555666666666 986 54 66532 2 46778888899988 45
Q ss_pred --CCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 252 --DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 252 --DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
...|....-.-.++|+.+++.. +. .+.++-+.|. -.-+..|++.||+.|
T Consensus 151 lg~pIGsg~Gi~~~~~I~~I~e~~-~v-pVI~egGI~t-----peda~~AmelGAdgV 201 (248)
T cd04728 151 LGSPIGSGQGLLNPYNLRIIIERA-DV-PVIVDAGIGT-----PSDAAQAMELGADAV 201 (248)
T ss_pred CCcCCCCCCCCCCHHHHHHHHHhC-CC-cEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 5555443333355666666653 22 1444433332 346788899999886
No 347
>PLN02623 pyruvate kinase
Probab=79.58 E-value=1.3e+02 Score=35.04 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.+|..|+..| +...+.|||+|=+.|-. +++|...++...+..... ..+.+-. -+.+.++.. +.+.. +
T Consensus 275 ~lTekD~~di-~f~~~~~vD~ialSFVr-~a~DV~~~r~~l~~~~~~--------~~iiakI-Et~eaVeNl-deIl~-g 341 (581)
T PLN02623 275 SITEKDWEDI-KFGVENKVDFYAVSFVK-DAQVVHELKDYLKSCNAD--------IHVIVKI-ESADSIPNL-HSIIT-A 341 (581)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCc--------ceEEEEE-CCHHHHHhH-HHHHH-h
Confidence 4778888775 56779999999998864 677777777766542211 1111111 123344432 22332 6
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC------C---CCCCCCHHHHHHHHHHHHHcC
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP------E---DAGRSDRKFLYEILGEVIKVG 244 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~------e---d~~r~d~e~l~~~~~~~~~aG 244 (620)
.|. +|++-.|+-++. ..+++.....++++.++++|.. |.... . ..+|++.. ++.. ++..|
T Consensus 342 ~Dg--ImIgrgDLgvel----g~~~v~~~qk~Ii~~~~~~gKp-vivaTQMLESMi~~~~PTRAEv~---Dva~-av~dG 410 (581)
T PLN02623 342 SDG--AMVARGDLGAEL----PIEEVPLLQEEIIRRCRSMGKP-VIVATNMLESMIVHPTPTRAEVS---DIAI-AVREG 410 (581)
T ss_pred CCE--EEECcchhhhhc----CcHHHHHHHHHHHHHHHHhCCC-EEEECchhhhcccCCCCCchhHH---HHHH-HHHcC
Confidence 675 456666665543 2378888889999999999986 43211 1 34455443 4343 34679
Q ss_pred CcEEeec-CCccccCHHHHHHHHHHHHHh
Q 007056 245 ATTLNIP-DTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 245 a~~I~L~-DTvG~~~P~~v~~li~~l~~~ 272 (620)
++.|.|. ||.=...|.+.-+.+..+...
T Consensus 411 ~d~vmLs~Eta~G~yPveaV~~m~~I~~~ 439 (581)
T PLN02623 411 ADAVMLSGETAHGKFPLKAVKVMHTVALR 439 (581)
T ss_pred CCEEEecchhhcCcCHHHHHHHHHHHHHH
Confidence 9999997 677778999888877777654
No 348
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.56 E-value=61 Score=33.69 Aligned_cols=130 Identities=22% Similarity=0.166 Sum_probs=73.1
Q ss_pred HHHHhcCCCCEEEEEecCCH-------HHH----HHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEE---EcCCCCCCCC
Q 007056 166 WEAVKYAKRPRIHTFIATSG-------IHM----EHKLRKTKQQVVEIARSMVKFARSL--GCDDVE---FSPEDAGRSD 229 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd-------~h~----~~~l~~t~ee~l~~~~~~v~~a~~~--G~~~V~---f~~ed~~r~d 229 (620)
+.++...|++.|.+=+|-|| ++. --+-|.+.++.++.+. ..|+. ....+. |++. ...-
T Consensus 32 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~----~~r~~~~~~p~vlm~Y~N~i--~~~G 105 (258)
T PRK13111 32 IKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVR----EIREKDPTIPIVLMTYYNPI--FQYG 105 (258)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHH----HHHhcCCCCCEEEEecccHH--hhcC
Confidence 34455568888888888777 221 1123566666665544 44422 222121 1221 1222
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 230 RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
+.++++.+.++|++-+-++| +.|++..+++..++++ ++ .+-+=|=.+.--.-...+++...|.=++ .
T Consensus 106 ---~e~f~~~~~~aGvdGviipD----Lp~ee~~~~~~~~~~~--gl---~~I~lvap~t~~eri~~i~~~s~gfIY~-v 172 (258)
T PRK13111 106 ---VERFAADAAEAGVDGLIIPD----LPPEEAEELRAAAKKH--GL---DLIFLVAPTTTDERLKKIASHASGFVYY-V 172 (258)
T ss_pred ---HHHHHHHHHHcCCcEEEECC----CCHHHHHHHHHHHHHc--CC---cEEEEeCCCCCHHHHHHHHHhCCCcEEE-E
Confidence 23567888899999999998 5788899999988875 22 2223333333344455555555554332 3
Q ss_pred ccccc
Q 007056 310 TINGI 314 (620)
Q Consensus 310 Ti~Gl 314 (620)
++.|.
T Consensus 173 s~~Gv 177 (258)
T PRK13111 173 SRAGV 177 (258)
T ss_pred eCCCC
Confidence 55554
No 349
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=79.46 E-value=12 Score=38.68 Aligned_cols=141 Identities=22% Similarity=0.134 Sum_probs=87.8
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC---CCCCCCCHHHHHHHHHHHHHcCCcEEee
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP---EDAGRSDRKFLYEILGEVIKVGATTLNI 250 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~---ed~~r~d~e~l~~~~~~~~~aGa~~I~L 250 (620)
+|.+.+-..+|-++- + +.+++-++.++++|+. |.++- |-+.. ...+.++++.+.+.|-+.|-+
T Consensus 38 ID~~K~g~Gt~~l~~--------~---~~l~eki~l~~~~gV~-v~~GGtl~E~a~~--q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 38 IDFLKFGWGTSALYP--------E---EILKEKIDLAHSHGVY-VYPGGTLFEVAYQ--QGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp -SEEEE-TTGGGGST--------C---HHHHHHHHHHHCTT-E-EEE-HHHHHHHHH--TT-HHHHHHHHHHCT-SEEEE
T ss_pred ccEEEecCceeeecC--------H---HHHHHHHHHHHHcCCe-EeCCcHHHHHHHh--cChHHHHHHHHHHcCCCEEEe
Confidence 567777666665432 2 2355788999999974 65522 11111 345677888888999999999
Q ss_pred cCCccccCHHHHHHHHHHHHHh-CCCCCceeEEEecCC-------CcchHHHHHHHHHHhcCcEE--eec---cccccCC
Q 007056 251 PDTVGITMPTEFGKLIADIKAN-TPGIENVVISTHCQN-------DLGLSTANTIAGACAGARQV--EVT---INGIGER 317 (620)
Q Consensus 251 ~DTvG~~~P~~v~~li~~l~~~-~~~~~~v~i~~H~HN-------D~GlAvANslaAv~aGA~~V--d~T---i~GlGER 317 (620)
.|..--+.+++-.++|+.++++ + .+.-++.-.+ |...-+-.....++|||+.| ++- -+|+=+.
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf----~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~ 179 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGF----KVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDN 179 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTS----EEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-T
T ss_pred cCCceeCCHHHHHHHHHHHHHCCC----EEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCC
Confidence 9999989999999999999876 3 2455555443 35566778999999999996 332 2277778
Q ss_pred cCcccHHHHHHHHHh
Q 007056 318 AGNASLEEVVMAFKC 332 (620)
Q Consensus 318 aGNa~lEevv~~L~~ 332 (620)
.||...+.+...+..
T Consensus 180 ~g~~r~d~v~~i~~~ 194 (244)
T PF02679_consen 180 DGEVRTDLVEKIIER 194 (244)
T ss_dssp TS-B-HHHHHHHHTT
T ss_pred CCCccHHHHHHHHHh
Confidence 999999887766654
No 350
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=79.41 E-value=43 Score=34.10 Aligned_cols=176 Identities=20% Similarity=0.215 Sum_probs=105.6
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcC
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 172 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 172 (620)
..|..+...+|++.-..-|.++|++. ..| +.|+..... .+ + | ||+-+ -.++.+-.+.+ +
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIA---adp---~LV~~~~~~-s~-------l-P-ICVSa-Vep~~f~~aV~----A 80 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIA---ADP---ELVKLAKSL-SN-------L-P-ICVSA-VEPELFVAAVK----A 80 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEec---CCH---HHHHHHHHh-CC-------C-C-eEeec-CCHHHHHHHHH----h
Confidence 36999999999999999999999994 344 455544332 11 1 3 44432 13333444444 4
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecC
Q 007056 173 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD 252 (620)
Q Consensus 173 g~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~D 252 (620)
|.+.|.| ...|.+-......+-+|+++.. +..|++ +..+..+-.--.--+.+.=.+++..+.++|+|.|-
T Consensus 81 GAdliEI--GNfDsFY~qGr~f~a~eVL~Lt----~~tR~L-LP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQ--- 150 (242)
T PF04481_consen 81 GADLIEI--GNFDSFYAQGRRFSAEEVLALT----RETRSL-LPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQ--- 150 (242)
T ss_pred CCCEEEe--cchHHHHhcCCeecHHHHHHHH----HHHHHh-CCCCceEEecCccccHHHHHHHHHHHHHhCCcEEE---
Confidence 8888765 4556565555556777777654 445555 22222222112234567777899999999999987
Q ss_pred CccccCHHH----HHHHHHH----------HHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 253 TVGITMPTE----FGKLIAD----------IKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 253 TvG~~~P~~----v~~li~~----------l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
|=|...-.. +-.+|+. +.+.+ ++|+- .--|+.--.+=.|+.+||..|
T Consensus 151 TEGgtss~p~~~g~lglIekaapTLAaay~ISr~v----~iPVl----cASGlS~vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 151 TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV----SIPVL----CASGLSAVTAPMAIAAGASGV 211 (242)
T ss_pred cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc----CCceE----eccCcchhhHHHHHHcCCccc
Confidence 666553221 2222221 22222 24432 246777778889999999876
No 351
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=79.11 E-value=23 Score=39.14 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=81.5
Q ss_pred CCCEEEEe--cCCC-ChhHH-HHHHHHHHHhcccccccCCccceEEeecccchhhHH-HHHHHHhcCCCCEEEEEecCCH
Q 007056 111 GVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATSG 185 (620)
Q Consensus 111 Gvd~IEvG--fP~~-s~~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~eal~~ag~~~v~i~~~~Sd 185 (620)
+++.|=+| -|.. +++.. +.++.|.+..+.. .+ ..+..- ++++.+. .-++.++.+|+.+|.+-+=+.+
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~--~~----~eit~E--~~P~~lt~e~l~~l~~~GvnrislGvQS~~ 137 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIA--PD----AEISLE--IDPGTFDLEQLQGYRSLGVNRVSLGVQAFQ 137 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--CC----CEEEEE--eCCCcCCHHHHHHHHHCCCCEEEEEcccCC
Confidence 56767664 4664 33333 3344444432111 11 233333 3444443 2366778889999999776666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHHcCCcEEeec
Q 007056 186 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 186 ~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~-r~d~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
-.....+|+.. ..+++.++++.+++.|++.|.++...+- .-+.+.+.+-++.+.+.+++.|.+-
T Consensus 138 d~~L~~l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y 202 (400)
T PRK07379 138 DELLALCGRSH--RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCY 202 (400)
T ss_pred HHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 67777787742 3456778899999999865555444332 3467788889999999999888753
No 352
>PRK07094 biotin synthase; Provisional
Probab=79.10 E-value=37 Score=36.04 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCC-ccccCHHHHHHHHHHHHHh
Q 007056 229 DRKFLYEILGEVIKVGATTLNIPDT-VGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 229 d~e~l~~~~~~~~~aGa~~I~L~DT-vG~~~P~~v~~li~~l~~~ 272 (620)
+++.+.+.++.+.+.|++.|.|.+. ......+.+.++++.+++.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~ 115 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE 115 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc
Confidence 4555666666665666666666421 1223345566666666554
No 353
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=79.05 E-value=37 Score=35.37 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEee----cCCcc----ccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcc--hHHHHHH
Q 007056 228 SDRKFLYEILGEVIKVGATTLNI----PDTVG----ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG--LSTANTI 297 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L----~DTvG----~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~G--lAvANsl 297 (620)
.+++.+.+.++.+.++|++.|.| |.+.+ .-.|..+.++++.+++.+. ++|.+-.=-+.. -...-+.
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~----~pv~vKl~~~~~~~~~~~~a~ 183 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVD----IPLLVKLSPYFDLEDIVELAK 183 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccC----CCEEEEeCCCCCHHHHHHHHH
Confidence 46788889999999999987665 23222 2368899999999998762 445554332222 2344455
Q ss_pred HHHHhcCcEEeeccccccC
Q 007056 298 AGACAGARQVEVTINGIGE 316 (620)
Q Consensus 298 aAv~aGA~~Vd~Ti~GlGE 316 (620)
.+.++||+.|..+ ++.++
T Consensus 184 ~l~~~Gad~i~~~-~~~~~ 201 (289)
T cd02810 184 AAERAGADGLTAI-NTISG 201 (289)
T ss_pred HHHHcCCCEEEEE-cccCc
Confidence 6778999999764 43333
No 354
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=79.03 E-value=16 Score=38.58 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=57.3
Q ss_pred EEEcCC---CCCCC-CHHHHHHHHHHHHHcCCcEEeec------CCccccCHHHHHHHH---HHHHHhCCCCCceeEEEe
Q 007056 218 VEFSPE---DAGRS-DRKFLYEILGEVIKVGATTLNIP------DTVGITMPTEFGKLI---ADIKANTPGIENVVISTH 284 (620)
Q Consensus 218 V~f~~e---d~~r~-d~e~l~~~~~~~~~aGa~~I~L~------DTvG~~~P~~v~~li---~~l~~~~~~~~~v~i~~H 284 (620)
+..+|. |+++. +++.+.+-++...+.||+.|-+. +.-.+...+|+.+++ +.+++.+ +++|++=
T Consensus 21 lNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISID 96 (282)
T PRK11613 21 LNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF----EVWISVD 96 (282)
T ss_pred EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEE
Confidence 445454 67764 88999999999999999998875 333344446766644 5555544 3678875
Q ss_pred cCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 285 CQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 285 ~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
.=+ ..-+.+|+++||+.|+--
T Consensus 97 T~~-----~~va~~AL~~GadiINDI 117 (282)
T PRK11613 97 TSK-----PEVIRESAKAGAHIINDI 117 (282)
T ss_pred CCC-----HHHHHHHHHcCCCEEEEC
Confidence 543 334578889999998544
No 355
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=78.74 E-value=98 Score=33.15 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCCc
Q 007056 229 DRKFLYEILGEVIKVGATTLNIPDTV 254 (620)
Q Consensus 229 d~e~l~~~~~~~~~aGa~~I~L~DTv 254 (620)
+.+.+.++++++.++|++-|.+--|.
T Consensus 214 ~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 214 SDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 34567788888899999988876553
No 356
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=78.51 E-value=28 Score=35.29 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCHHHHHHHHHHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVI 241 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~ed~~r~d~e~l~~~~~~~~ 241 (620)
+.-++.+..+|.+.|.+ |.+ ......+.++++|++|++. +.++| .|+.+.+..+++.+
T Consensus 71 ~~~i~~~~~~gad~i~~-------H~E---------a~~~~~~~l~~ik~~g~k~GlalnP----~Tp~~~i~~~l~~~- 129 (220)
T PRK08883 71 DRIIPDFAKAGASMITF-------HVE---------ASEHVDRTLQLIKEHGCQAGVVLNP----ATPLHHLEYIMDKV- 129 (220)
T ss_pred HHHHHHHHHhCCCEEEE-------ccc---------CcccHHHHHHHHHHcCCcEEEEeCC----CCCHHHHHHHHHhC-
Confidence 33445555668888765 332 1233557889999999863 56688 37778777776643
Q ss_pred HcCCcEEee----cCCccc-cCHHHHHHHHHHHHHhCCCC-CceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 242 KVGATTLNI----PDTVGI-TMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 242 ~aGa~~I~L----~DTvG~-~~P~~v~~li~~l~~~~~~~-~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
|.|.+ |.+.|- ..|. ..+.++.+++..+.. -+++|.+ |-|.-..|.-..+++||+.+
T Consensus 130 ----D~vlvMtV~PGfgGq~fi~~-~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~v 192 (220)
T PRK08883 130 ----DLILLMSVNPGFGGQSFIPH-TLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMF 192 (220)
T ss_pred ----CeEEEEEecCCCCCceecHh-HHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 33222 344443 3443 344666666654311 0255665 89999999999999999997
No 357
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=78.34 E-value=20 Score=35.39 Aligned_cols=163 Identities=21% Similarity=0.244 Sum_probs=84.9
Q ss_pred eEEeecccchhhHHHHHHHHhcCCCCEEEEEec-CCHHHHHHHhCCCHHHH-HHHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 007056 150 VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQV-VEIARSMVKFARSLGCDDVEFSPEDAGR 227 (620)
Q Consensus 150 ~i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~-~Sd~h~~~~l~~t~ee~-l~~~~~~v~~a~~~G~~~V~f~~ed~~r 227 (620)
.|||+. +.+|++.+.+. |++.|.+-.. .|+ .++ .+.+.+..+.++.. ...|-+-. .
T Consensus 2 KiCGi~--~~ed~~~a~~~----Gvd~ig~i~~~~s~-----------R~v~~~~a~~l~~~~~~~-~~~V~v~v----n 59 (203)
T cd00405 2 KICGIT--TLEDALAAAEA----GADAIGFIFAPKSP-----------RYVSPEQAREIVAALPPF-VKRVGVFV----N 59 (203)
T ss_pred EECCCC--CHHHHHHHHHc----CCCEEEEecCCCCC-----------CCCCHHHHHHHHHhCCCC-CcEEEEEe----C
Confidence 577776 46677776654 8888887543 232 233 55566666666552 12233311 1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCcee--EEEecCCCcchHHHHHHHHHHhcCc
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVV--ISTHCQNDLGLSTANTIAGACAGAR 305 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~--i~~H~HND~GlAvANslaAv~aGA~ 305 (620)
.+++. +.+.+.+.|++.|-|-..- .|. .++.+++.++. ++. +++++|++.-. ..+...||+
T Consensus 60 ~~~~~---i~~ia~~~~~d~Vqlhg~e---~~~----~~~~l~~~~~~--~~i~~i~~~~~~~~~~-----~~~~~~~aD 122 (203)
T cd00405 60 EDLEE---ILEIAEELGLDVVQLHGDE---SPE----YCAQLRARLGL--PVIKAIRVKDEEDLEK-----AAAYAGEVD 122 (203)
T ss_pred CCHHH---HHHHHHhcCCCEEEECCCC---CHH----HHHHHHhhcCC--cEEEEEecCChhhHHH-----hhhccccCC
Confidence 22344 4445567899999887432 343 44555655432 345 56666655322 455667888
Q ss_pred EE--eeccccccCCcCcc-cHHHHHHHHHhccccccCccccCCChhhHHHHHH
Q 007056 306 QV--EVTINGIGERAGNA-SLEEVVMAFKCRGEHILGGLYTGINTRHIVMASK 355 (620)
Q Consensus 306 ~V--d~Ti~GlGERaGNa-~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~ 355 (620)
++ |+..-+.++++|.. +++ ++..+.. ..+. -+--||+.+.+.++-+
T Consensus 123 ~il~dt~~~~~~Gg~g~~~~~~-~l~~~~~-~~Pv--ilaGGI~~~Nv~~~i~ 171 (203)
T cd00405 123 AILLDSKSGGGGGGTGKTFDWS-LLRGLAS-RKPV--ILAGGLTPDNVAEAIR 171 (203)
T ss_pred EEEEcCCCCCCCCCCcceEChH-Hhhcccc-CCCE--EEECCCChHHHHHHHH
Confidence 85 66544333334433 332 2322221 1111 1334677777665553
No 358
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=78.26 E-value=92 Score=32.56 Aligned_cols=206 Identities=13% Similarity=0.047 Sum_probs=113.9
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEecC--CCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 92 GATLTSKEKLDIARQLAKLGVDIIEAGFP--AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 92 g~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP--~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
+.+|-......+-+...++|+.....-.+ ...++..+.++.+...- +....+......-+..+++..
T Consensus 44 ~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~-----------~daIiv~~~d~~~~~~~v~~a 112 (322)
T COG1879 44 GNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQG-----------VDAIIINPVDPDALTPAVKKA 112 (322)
T ss_pred CChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcC-----------CCEEEEcCCChhhhHHHHHHH
Confidence 44455555566777778889733222222 22333444555543321 112233344555566667767
Q ss_pred hcCCCCEEEEEecCCHH-HHHHHhCCCHHHH-HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 170 KYAKRPRIHTFIATSGI-HMEHKLRKTKQQV-VEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~-h~~~~l~~t~ee~-l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
..+|++.|.+-....+. ....-++.+..+. ......+++.....|. .+.+..........+...-+.+.+.+.+...
T Consensus 113 ~~aGIpVv~~d~~~~~~~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~-v~~~~g~~~~~~~~~R~~G~~~~l~~~~~~~ 191 (322)
T COG1879 113 KAAGIPVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAEYLAKALGGKGK-VVVLVGSPGNSSAEERVKGFRDALKEHPPDI 191 (322)
T ss_pred HHCCCcEEEEecCCCCCCceeEEEecCcHHHHHHHHHHHHHHhCCCCe-EEEEecCCCCchHHHHHhhHHHHHHhCCCcE
Confidence 77899988775554432 1211223222221 1222333333333342 3444443445555566666666666666657
Q ss_pred EeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccccc
Q 007056 248 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 315 (620)
Q Consensus 248 I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlG 315 (620)
..+....|-..+.+-.+.+..+....|++ -+++++||-. +++-..+.-.+|-.. +.-+.|.+
T Consensus 192 ~v~~~~~~~~~~~~a~~~~~~~L~~~pdi----~~i~~~~d~~-a~ga~~A~~~~g~~~-~v~v~g~D 253 (322)
T COG1879 192 EVVDVQTGDWDRDKALEVMEDLLAANPDI----DGIYAANDGM-ALGAIQALKAAGRKG-DVVVVGFD 253 (322)
T ss_pred EEeeccCCcccHHHHHHHHHHHHHhCCCc----eEEEECCchh-HHHHHHHHHHcCCCC-ceEEEEec
Confidence 77777888999999999999999998864 3778888643 333332222577665 55666544
No 359
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=78.08 E-value=9.2 Score=41.04 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHc-CCcEEeecCCccc-----cCHHHHHHHHH----HHHHhCCCCCceeEEEecCCCcchHHHHHHHH-
Q 007056 231 KFLYEILGEVIKV-GATTLNIPDTVGI-----TMPTEFGKLIA----DIKANTPGIENVVISTHCQNDLGLSTANTIAG- 299 (620)
Q Consensus 231 e~l~~~~~~~~~a-Ga~~I~L~DTvG~-----~~P~~v~~li~----~l~~~~~~~~~v~i~~H~HND~GlAvANslaA- 299 (620)
+++.+++++.+++ |++.|.+.|+.|. +.|+.+.+++. .+.+.+......++.+|..-+. .+-+..
T Consensus 155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~----~~~l~~~ 230 (321)
T cd03309 155 DAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAA----ASLVPSM 230 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCc----HHHHHHH
Confidence 4566777777777 9999999998776 78998886652 3333322110246788877643 122333
Q ss_pred HHhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 300 ACAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 300 v~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
.+.|++.+++-.. . .++.++...+.
T Consensus 231 ~e~g~dvl~~d~~-----~--~dl~eak~~~g 255 (321)
T cd03309 231 AEMGVDSWNVVMT-----A--NNTAELRRLLG 255 (321)
T ss_pred HHcCCCEEEecCC-----C--CCHHHHHHHhC
Confidence 4459988774322 1 36666544333
No 360
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=78.07 E-value=34 Score=36.72 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEe--e-c-----CCccccCHHHHHHHH
Q 007056 195 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN--I-P-----DTVGITMPTEFGKLI 266 (620)
Q Consensus 195 t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~--L-~-----DTvG~~~P~~v~~li 266 (620)
..+..++.+.+.- +..+.. |..+. ...+++.+.++++.+.++|+|.|- + | +-.|...++.+.+++
T Consensus 83 g~~~~~~~i~~~~---~~~~~p-vi~si---~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv 155 (325)
T cd04739 83 GPEEYLELIRRAK---RAVSIP-VIASL---NGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDIL 155 (325)
T ss_pred CHHHHHHHHHHHH---hccCCe-EEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHH
Confidence 4455555554321 222332 44443 235667778999999999988653 3 2 334555567788999
Q ss_pred HHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 267 ADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 267 ~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
+.+++.+. +||.+-.=-++..-..-+.++.++||+.|..
T Consensus 156 ~~v~~~~~----iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 156 RAVKSAVT----IPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHhccC----CCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 99998762 4566554444444445556678899999854
No 361
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.04 E-value=29 Score=35.25 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=62.5
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-----CC-----CC-
Q 007056 161 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-----GR-----SD- 229 (620)
Q Consensus 161 dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-----~r-----~d- 229 (620)
+++.+++.++.+|.+.|.+..+. ..+ +.+..+.++++|++.+.++.... .+ .+
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~---------~~~-------~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY---------DWD-------AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGR 78 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc---------cCC-------HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCcc
Confidence 57778888888899999886532 122 23344566789986434432110 00 11
Q ss_pred ----HHHHHHHHHHHHHcCCcEEeecCCc--cccCHHH-HHHHHHHHHH---hCCCCCceeEEEecCCC
Q 007056 230 ----RKFLYEILGEVIKVGATTLNIPDTV--GITMPTE-FGKLIADIKA---NTPGIENVVISTHCQND 288 (620)
Q Consensus 230 ----~e~l~~~~~~~~~aGa~~I~L~DTv--G~~~P~~-v~~li~~l~~---~~~~~~~v~i~~H~HND 288 (620)
.+.+.+.++.+.+.|+..|++.--. +-..+++ ...+++.+++ .... .++.|.++.||.
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~gi~l~lE~~~~ 146 (254)
T TIGR03234 79 EEEFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDR-IGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEECCc
Confidence 2566678888889999998875211 1112233 2333333332 2211 147888888865
No 362
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=77.98 E-value=66 Score=34.11 Aligned_cols=203 Identities=17% Similarity=0.092 Sum_probs=114.3
Q ss_pred HHHHhHcCCCEEEEec---------CCC---Chh-HHHHHHHHHHHhcccccccCCccceEE----eecccchhhHHHHH
Q 007056 104 ARQLAKLGVDIIEAGF---------PAA---SKE-DFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 166 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGf---------P~~---s~~-d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 166 (620)
++.+.++|++.|=.+. |-. +.+ -.+.+++|++.... |.+. ||+.. ..+.+.+
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~l---------Pv~aD~d~GyG~~--~~v~~tV 96 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSI---------PLIADIDTGFGNA--VNVHYVV 96 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCC---------CEEEECCCCCCCc--HHHHHHH
Confidence 5666778999887643 321 112 24667777764321 2222 23322 2467777
Q ss_pred HHHhcCCCCEEEEEecCCHHHHHHH----hC-CCHHHHHHHHHHHHHHHHHcCCCEEEEcC-CCCC--CCCHHHHHHHHH
Q 007056 167 EAVKYAKRPRIHTFIATSGIHMEHK----LR-KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG--RSDRKFLYEILG 238 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~Sd~h~~~~----l~-~t~ee~l~~~~~~v~~a~~~G~~~V~f~~-ed~~--r~d~e~l~~~~~ 238 (620)
+.+..+|+..|+|-..+++-++-+- -. .+.++..++++.+.+. + .+.+ +...+ -|+. ....+..++-++
T Consensus 97 ~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d-~~I~ARTDa~~~~~g~deAI~Ra~ 173 (290)
T TIGR02321 97 PQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRD-FVVIARVEALIAGLGQQEAVRRGQ 173 (290)
T ss_pred HHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCC-EEEEEEeccccccCCHHHHHHHHH
Confidence 7777889999999887776554321 11 3778878877766554 2 3333 22222 1332 234577888899
Q ss_pred HHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchH-HHHHHHHHHhc-CcEEeeccccccC
Q 007056 239 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAG-ARQVEVTINGIGE 316 (620)
Q Consensus 239 ~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv~aG-A~~Vd~Ti~GlGE 316 (620)
+..++|||.|.++= +...|+++.++++.+... +++-+.. ..+.. .+..++ +.| ... .++...-=
T Consensus 174 aY~eAGAD~ifv~~--~~~~~~ei~~~~~~~~~p------~pv~~~~--~~~p~~~~~~l~--~lg~~~~--v~~g~~~~ 239 (290)
T TIGR02321 174 AYEEAGADAILIHS--RQKTPDEILAFVKSWPGK------VPLVLVP--TAYPQLTEADIA--ALSKVGI--VIYGNHAI 239 (290)
T ss_pred HHHHcCCCEEEecC--CCCCHHHHHHHHHhcCCC------CCeEEec--CCCCCCCHHHHH--HhcCCcE--EEEChHHH
Confidence 99999999999852 346788888887765321 3343322 11111 122233 344 444 33333334
Q ss_pred CcCcccHHHHHHHHHhcc
Q 007056 317 RAGNASLEEVVMAFKCRG 334 (620)
Q Consensus 317 RaGNa~lEevv~~L~~~~ 334 (620)
|+-..++++.+..|...|
T Consensus 240 ~aa~~a~~~~~~~i~~~g 257 (290)
T TIGR02321 240 RAAVGAVREVFARIRRDG 257 (290)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 666666777766666533
No 363
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=77.94 E-value=32 Score=36.21 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC-CcEEee---c-CC-c-cc---cCHHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNI---P-DT-V-GI---TMPTEFG 263 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG-a~~I~L---~-DT-v-G~---~~P~~v~ 263 (620)
...++.++.+.+.. ++.+.. +..+. .-.+++.+.+.++.+.++| +|.|-| | -+ . |. ..|+.+.
T Consensus 74 ~g~~~~~~~~~~~~---~~~~~p-~i~si---~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~ 146 (301)
T PRK07259 74 PGVDAFIEEELPWL---EEFDTP-IIANV---AGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAY 146 (301)
T ss_pred cCHHHHHHHHHHHH---hccCCc-EEEEe---ccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHH
Confidence 34566666555432 233332 43333 1246788889999999998 998866 1 11 1 22 2589999
Q ss_pred HHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee
Q 007056 264 KLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 309 (620)
Q Consensus 264 ~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~ 309 (620)
++++.+++.+ +++|.+..=-+.--...-+..+.++|++.|+.
T Consensus 147 eiv~~vr~~~----~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 147 EVVKAVKEVV----KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHhc----CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 9999999976 25677765433333334445677899998854
No 364
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=77.88 E-value=58 Score=35.19 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=58.8
Q ss_pred HHhcCCCCEEEEEec--------CCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---EEEEcCCCCC--CCCHH
Q 007056 168 AVKYAKRPRIHTFIA--------TSGIH--MEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDAG--RSDRK 231 (620)
Q Consensus 168 al~~ag~~~v~i~~~--------~Sd~h--~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~---~V~f~~ed~~--r~d~e 231 (620)
..+.+|.+.|.+-.+ .|+.. +...+|=+.++-.+.+.+.++.+|+. |.+ .+.+++.|.. -.+++
T Consensus 149 ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~ 228 (343)
T cd04734 149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPD 228 (343)
T ss_pred HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHH
Confidence 345689999877663 14433 33457778888888888888888875 432 2566775432 24678
Q ss_pred HHHHHHHHHHHcC-CcEEee
Q 007056 232 FLYEILGEVIKVG-ATTLNI 250 (620)
Q Consensus 232 ~l~~~~~~~~~aG-a~~I~L 250 (620)
...++++.+.++| +|.|.+
T Consensus 229 e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEe
Confidence 8889999999998 898888
No 365
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=77.87 E-value=87 Score=32.05 Aligned_cols=94 Identities=21% Similarity=0.153 Sum_probs=54.9
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHH----H-------HhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCH--H
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHME----H-------KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDR--K 231 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~----~-------~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~r~d~--e 231 (620)
++.+..+|++.+++=+|.||-.+. . +-+.+.+ ...+.++..|+. ... +.+- +..++ .
T Consensus 20 ~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~----~~~~~~~~vr~~~~~p-v~lm----~y~n~~~~ 90 (242)
T cd04724 20 LKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLK----DVLELVKEIRKKNTIP-IVLM----GYYNPILQ 90 (242)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHH----HHHHHHHHHhhcCCCC-EEEE----EecCHHHH
Confidence 344455678888877666652221 1 1122322 444556666654 232 2221 11222 1
Q ss_pred H-HHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 232 F-LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 232 ~-l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
+ +.++++.+.++|++.+.++|- .|++..++++.++++
T Consensus 91 ~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~ 128 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEY 128 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHc
Confidence 1 245677788999999999994 578888999999886
No 366
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=77.84 E-value=14 Score=41.10 Aligned_cols=92 Identities=9% Similarity=0.007 Sum_probs=65.2
Q ss_pred chhhH-HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHH
Q 007056 158 NERDI-KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 235 (620)
Q Consensus 158 ~~~dI-~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~ 235 (620)
++..+ +..++.++.+|+.+|.+-+=+.+-...+.+++.. ..+.+.++++.+++.|+..|.++...+ ...+.+.+.+
T Consensus 135 ~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~ 212 (430)
T PRK08208 135 SPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ--KRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWME 212 (430)
T ss_pred CcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHH
Confidence 34444 2346677788999999876666556666777753 456788899999999986443333222 3567788889
Q ss_pred HHHHHHHcCCcEEeec
Q 007056 236 ILGEVIKVGATTLNIP 251 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~ 251 (620)
.++.+.+.|++.|.+-
T Consensus 213 ~l~~~~~l~~~~is~y 228 (430)
T PRK08208 213 SLDQALVYRPEELFLY 228 (430)
T ss_pred HHHHHHhCCCCEEEEc
Confidence 9999999999888765
No 367
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=77.80 E-value=19 Score=36.66 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=57.5
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcch-HHHHHH
Q 007056 219 EFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTI 297 (620)
Q Consensus 219 ~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANsl 297 (620)
.|.+.- +-.+.+.-.+.++.+.+.+.+.+.|.--.......++.++|+.+...+|. +.+.-+ +|. ...+.+
T Consensus 57 l~gvIq-Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~--~~pr~l-----~G~~~P~~i~ 128 (238)
T PF01702_consen 57 LFGVIQ-GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPP--DKPRYL-----LGVGTPEEIL 128 (238)
T ss_dssp EEEEE---TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-T--TS-EEE-----TTB-SHHHHH
T ss_pred eeeeeC-CCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCc--ccceec-----cCCCCHHHHH
Confidence 455432 34555666677788877668888888766666789999999999998885 455543 333 567999
Q ss_pred HHHHhcCcEEeeccc
Q 007056 298 AGACAGARQVEVTIN 312 (620)
Q Consensus 298 aAv~aGA~~Vd~Ti~ 312 (620)
.++..|+|.+|++.-
T Consensus 129 ~~v~~GvD~fDs~~p 143 (238)
T PF01702_consen 129 EAVYLGVDLFDSSYP 143 (238)
T ss_dssp HHHHTT--EEEESHH
T ss_pred HHHHcCCcEEcchHH
Confidence 999999999999865
No 368
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=77.76 E-value=30 Score=34.50 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCCE-EEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCc-----cccCHHHHHHHHHHHHHhCC
Q 007056 201 EIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-----GITMPTEFGKLIADIKANTP 274 (620)
Q Consensus 201 ~~~~~~v~~a~~~G~~~-V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTv-----G~~~P~~v~~li~~l~~~~~ 274 (620)
+...+.++++|+.|.+. +...| .|+.+++...++. +|. .|-=|| |----++.-.-|+++|+++|
T Consensus 99 q~~~~lv~~ir~~Gmk~G~alkP----gT~Ve~~~~~~~~-----~D~-vLvMtVePGFGGQkFme~mm~KV~~lR~kyp 168 (224)
T KOG3111|consen 99 QKPAELVEKIREKGMKVGLALKP----GTPVEDLEPLAEH-----VDM-VLVMTVEPGFGGQKFMEDMMPKVEWLREKYP 168 (224)
T ss_pred cCHHHHHHHHHHcCCeeeEEeCC----CCcHHHHHHhhcc-----ccE-EEEEEecCCCchhhhHHHHHHHHHHHHHhCC
Confidence 34567899999999851 34466 4777777666552 222 122222 22233455667899999999
Q ss_pred CCCceeEEEecCCCcchHHHHHHHHHHhcCcEEee--ccccccCCcCcccHHHHHHHHHh
Q 007056 275 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEV--TINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 275 ~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~--Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
. ..|++ |-|++..|.-.+.+|||+.+=+ ++. |-.+-.+++..|+.
T Consensus 169 ~---l~iev----DGGv~~~ti~~~a~AGAN~iVaGsavf------~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 169 N---LDIEV----DGGVGPSTIDKAAEAGANMIVAGSAVF------GAADPSDVISLLRN 215 (224)
T ss_pred C---ceEEe----cCCcCcchHHHHHHcCCCEEEecceee------cCCCHHHHHHHHHH
Confidence 5 34543 7899999999999999998622 222 33456666666653
No 369
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=77.66 E-value=1.2e+02 Score=33.63 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCCh-----------hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASK-----------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-----------~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
.+.++=.++++.+.+.|+|.||+-+-.-+- ++.+.++++.+.+... .-.|.+.=++ .+..+|.
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-----~~iPv~vKLs-Pn~t~i~ 197 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-----ATVPVWAKMT-PNITDIT 197 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-----hcCceEEEeC-CChhhHH
Q ss_pred HHHHHHhcCCCCEEEEEecCCH---HHHHH------------HhCCCHHHHHHHHHHHHHHHHHc-------CCCEEEEc
Q 007056 164 TAWEAVKYAKRPRIHTFIATSG---IHMEH------------KLRKTKQQVVEIARSMVKFARSL-------GCDDVEFS 221 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd---~h~~~------------~l~~t~ee~l~~~~~~v~~a~~~-------G~~~V~f~ 221 (620)
...+++..+|++-|.++..+.. +..+. .-+.+-.-+...+..+|..+++. ++.-+-.+
T Consensus 198 ~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvG 277 (385)
T PLN02495 198 QPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIG 277 (385)
T ss_pred HHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEEC
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHH
Q 007056 222 PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKA 271 (620)
Q Consensus 222 ~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~ 271 (620)
-. ++.+.+.+++. +||+.+-+|-.+=+-=|.-+.++.+.|.+
T Consensus 278 GI----~s~~Da~e~i~----aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~ 319 (385)
T PLN02495 278 GV----ETGGDAAEFIL----LGADTVQVCTGVMMHGYPLVKNLCAELQD 319 (385)
T ss_pred CC----CCHHHHHHHHH----hCCCceeEeeeeeecCcHHHHHHHHHHHH
No 370
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=77.62 E-value=57 Score=35.48 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=53.9
Q ss_pred hHHHHHHHHhcCCCCE--EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE----cCC--CCC--CCCH
Q 007056 161 DIKTAWEAVKYAKRPR--IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF----SPE--DAG--RSDR 230 (620)
Q Consensus 161 dI~~a~eal~~ag~~~--v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f----~~e--d~~--r~d~ 230 (620)
+++.|++. |.+. +++|.. |+ ...+.++++.++++.|++.|+..+.+ ++. +.. .+++
T Consensus 151 sVedAlrL----GAdAV~~tvy~G-s~---------~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~ 216 (348)
T PRK09250 151 SVEDALRL----GAVAVGATIYFG-SE---------ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAA 216 (348)
T ss_pred cHHHHHHC----CCCEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccH
Confidence 46767765 5554 555655 33 12467889999999999999975433 221 111 3458
Q ss_pred HHHHHHHHHHHHcCCcEEeecCC
Q 007056 231 KFLYEILGEVIKVGATTLNIPDT 253 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DT 253 (620)
+.+.-.++.+.++|||.|-..=|
T Consensus 217 d~Ia~AaRiaaELGADIVKv~yp 239 (348)
T PRK09250 217 DLTGQANHLAATIGADIIKQKLP 239 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEecCC
Confidence 89999999999999998765433
No 371
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=77.52 E-value=24 Score=37.18 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc-EEeecCCc-cccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT-TLNIPDTV-GITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~-~I~L~DTv-G~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|+. .+.+.+..+++++.+.+.. +|.+.... .+...+.+..++..+.++. ++|
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~-----~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~----~vp 76 (281)
T PRK06806 6 MKELLKKANQENYGVGAFSV-----ANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA----KVP 76 (281)
T ss_pred HHHHHHHHHHCCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC----CCC
Confidence 45778899999885446766 6889999999999999865 45554433 3333344666777666665 377
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
+.+|. |-|.-..-...|+++|++.|.
T Consensus 77 v~lHl--DH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 77 VAVHF--DHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEE
Confidence 88665 556678888999999999874
No 372
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=77.50 E-value=25 Score=36.19 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcC
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 172 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 172 (620)
..++.++-+++++.|.+.|++.||--+| +.|++..+++++... .|...+=.-....++...++. .
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEeP~~---~~d~~~~~~l~~~~~---------ipia~dE~~~~~~~~~~~i~~---~ 202 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQPLP---ADDLEGRAALARATD---------TPIMADESAFTPHDAFRELAL---G 202 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEECCCC---cccHHHHHHHHhhCC---------CCEEECCCCCCHHHHHHHHHh---C
Confidence 4578999999999999999999998544 346677777776532 132222111234455544432 3
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC
Q 007056 173 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 222 (620)
Q Consensus 173 g~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ 222 (620)
..+.|.+= .++---+..+.+++++|+.+|+. +..++
T Consensus 203 ~~d~v~~k-------------~~~~GGi~~~~~~~~~A~~~gi~-~~~~~ 238 (265)
T cd03315 203 AADAVNIK-------------TAKTGGLTKAQRVLAVAEALGLP-VMVGS 238 (265)
T ss_pred CCCEEEEe-------------cccccCHHHHHHHHHHHHHcCCc-EEecC
Confidence 45555431 11122355677889999999986 66654
No 373
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=77.46 E-value=20 Score=37.93 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEe-ec-CCccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN-IP-DTVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~-L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|++ .+.+.+..+++++.+.+...|- +. .+..++-.+.+..++..+.++. ++|
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~----~VP 76 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY----NMP 76 (286)
T ss_pred HHHHHHHHHHCCceEEEEEe-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC----CCC
Confidence 45778889999875446666 5789999999999999876544 32 2333445566788888888876 377
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeeccccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 314 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~Gl 314 (620)
+.+| =|-|........|+++|.+- +|+|-..+
T Consensus 77 ValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 110 (286)
T PRK12738 77 LALH--LDHHESLDDIRRKVHAGVRSAMIDGSHFPF 110 (286)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCeEeecCCCCCH
Confidence 8855 47777888999999999986 58886655
No 374
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=77.42 E-value=14 Score=41.99 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=77.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhc
Q 007056 224 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 303 (620)
Q Consensus 224 d~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aG 303 (620)
|+.+. +++.+.++...+.|||.|-+.=-.+.-.|+++...|+.+++.. +++|++=..| ..-..+|+++|
T Consensus 160 ~a~~l--~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~----~~pISIDT~~-----~~v~eaAL~aG 228 (499)
T TIGR00284 160 PTVAE--DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL----DSPVIADTPT-----LDELYEALKAG 228 (499)
T ss_pred CCcch--HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC----CCcEEEeCCC-----HHHHHHHHHcC
Confidence 55544 7888888889999999998874444445667889999998765 3678887776 45568899999
Q ss_pred CcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHHHHHHHHhCCCC
Q 007056 304 ARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHV 365 (620)
Q Consensus 304 A~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s~~v~~~~g~~v 365 (620)
|+.|+ ++.| +| +++++..+...+-... .+... ....+..+.+.++.+....+
T Consensus 229 AdiIN-sVs~-----~~--~d~~~~l~a~~g~~vV-lm~~~-~~~~~~~l~~~ie~a~~~Gi 280 (499)
T TIGR00284 229 ASGVI-MPDV-----EN--AVELASEKKLPEDAFV-VVPGN-QPTNYEELAKAVKKLRTSGY 280 (499)
T ss_pred CCEEE-ECCc-----cc--hhHHHHHHHHcCCeEE-EEcCC-CCchHHHHHHHHHHHHHCCC
Confidence 99998 6665 34 4455554554331111 11111 12233455556666544444
No 375
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=77.37 E-value=51 Score=37.62 Aligned_cols=132 Identities=16% Similarity=0.215 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecC-CCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFP-AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP-~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
+.++ ++.++.|.++|+|.|++-.. +.++.-++.+++|.+..++ .+.+++- -...++.+.+.+ +|+
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~--------~~v~aG~-V~t~~~a~~~~~----aGa 304 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPH--------VDIIAGN-VVTADQAKNLID----AGA 304 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCC--------ceEEECC-cCCHHHHHHHHH----cCC
Confidence 3455 89999999999999999543 1234446788888875321 1333332 234555555544 589
Q ss_pred CEEEEEe-cCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeec
Q 007056 175 PRIHTFI-ATS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 251 (620)
Q Consensus 175 ~~v~i~~-~~S--d~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~ 251 (620)
+.|.+-+ +.| -.+. ..+....+ +..+.++.+.+++.|+. |. + |++-.++.. +++ +..+||+.+.+.
T Consensus 305 d~I~vg~g~Gs~~~t~~--~~~~g~p~-~~ai~~~~~~~~~~~v~-vI--a-dGGi~~~~d---i~k-Ala~GA~~Vm~G 373 (495)
T PTZ00314 305 DGLRIGMGSGSICITQE--VCAVGRPQ-ASAVYHVARYARERGVP-CI--A-DGGIKNSGD---ICK-ALALGADCVMLG 373 (495)
T ss_pred CEEEECCcCCcccccch--hccCCCCh-HHHHHHHHHHHhhcCCe-EE--e-cCCCCCHHH---HHH-HHHcCCCEEEEC
Confidence 9876522 222 1111 22222222 44566777888888864 32 3 455444443 333 346899988765
Q ss_pred C
Q 007056 252 D 252 (620)
Q Consensus 252 D 252 (620)
-
T Consensus 374 ~ 374 (495)
T PTZ00314 374 S 374 (495)
T ss_pred c
Confidence 3
No 376
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.07 E-value=12 Score=37.75 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=62.8
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEec
Q 007056 206 MVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC 285 (620)
Q Consensus 206 ~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~ 285 (620)
..+...+.++-.|.. -.+++...++++++.+.|.+.|-+. +.+| +-.+.|+.+++.+|+ +.|+...
T Consensus 8 ~~~~l~~~~~iaV~r------~~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~---~~IGAGT 73 (212)
T PRK05718 8 IEEILRAGPVVPVIV------INKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPE---ALIGAGT 73 (212)
T ss_pred HHHHHHHCCEEEEEE------cCCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCC---CEEEEee
Confidence 345556666533322 2467899999999999999998887 5666 566788999988884 6788766
Q ss_pred CCCcchHHHHHHHHHHhcCcEEe
Q 007056 286 QNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 286 HND~GlAvANslaAv~aGA~~Vd 308 (620)
=-+. .-+..|+++||+.+=
T Consensus 74 Vl~~----~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 74 VLNP----EQLAQAIEAGAQFIV 92 (212)
T ss_pred ccCH----HHHHHHHHcCCCEEE
Confidence 5554 668889999999973
No 377
>PRK08444 hypothetical protein; Provisional
Probab=76.81 E-value=6.6 Score=42.71 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeecCCcccc---CHHHHHHHHHHHHHhCCCCCceeEEEecCC-----------Cc
Q 007056 224 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQN-----------DL 289 (620)
Q Consensus 224 d~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~H~HN-----------D~ 289 (620)
+++..++|.+.+.++.+.+.|+++|.|. .|.- ..+.+.++++.+++.+|+ +|.|- -.
T Consensus 76 ~~y~ls~eeI~~~a~~a~~~G~~ei~iv--~G~~p~~~~e~y~e~ir~Ik~~~p~-------i~i~a~s~~Ei~~~a~~~ 146 (353)
T PRK08444 76 NPYTMSHEEILEIVKNSVKRGIKEVHIV--SAHNPNYGYEWYLEIFKKIKEAYPN-------LHVKAMTAAEVDFLSRKF 146 (353)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHCCC-------ceEeeCCHHHHHHHHHHc
Confidence 4456788999999999999999999987 2211 235678999999998874 34444 67
Q ss_pred chHHHHHHHHH-HhcCcEEee
Q 007056 290 GLSTANTIAGA-CAGARQVEV 309 (620)
Q Consensus 290 GlAvANslaAv-~aGA~~Vd~ 309 (620)
|+.+--.+..+ +||.+.+.+
T Consensus 147 g~~~~e~l~~LkeAGl~~~~g 167 (353)
T PRK08444 147 GKSYEEVLEDMLEYGVDSMPG 167 (353)
T ss_pred CCCHHHHHHHHHHhCcccCCC
Confidence 88886665555 568887654
No 378
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=76.69 E-value=21 Score=37.68 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE-EeecC-CccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPD-TVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~-I~L~D-TvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.++-.-.|+. .+.+.+..+++++.+.+... |.+.. +..++-.+.+..++..+.++. ++|
T Consensus 6 ~k~il~~A~~~~yaV~AfN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~----~VP 76 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPAFNI-----HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY----HHP 76 (284)
T ss_pred HHHHHHHHHHcCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC----CCC
Confidence 45778889998875346665 57799999999999998654 44433 344555567788888888776 377
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeeccccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 314 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~Gl 314 (620)
+.+|. |-|.-......|+++|.+- +|+|-..+
T Consensus 77 V~lHL--DHg~~~e~i~~Ai~~GftSVM~DgS~l~~ 110 (284)
T PRK09195 77 LALHL--DHHEKFDDIAQKVRSGVRSVMIDGSHLPF 110 (284)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEEeCCCCCCH
Confidence 87654 6677789999999999986 58886655
No 379
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=76.52 E-value=46 Score=35.98 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccC--CccceE------Eeecccc------hhh
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAES--GYVPVI------CGLSRCN------ERD 161 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~--~l~~~i------~~~~r~~------~~d 161 (620)
..+.-++=++.|.++|-+.+=+..| ..++.++++.|.+...-.+..|. .|...+ +.--|-| ++-
T Consensus 32 Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~ 109 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRER 109 (346)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHH
Confidence 4555566678899999999999887 45677788887764321111110 000000 0000222 223
Q ss_pred HHHHHHHHhcCCCC-EEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHH
Q 007056 162 IKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 239 (620)
Q Consensus 162 I~~a~eal~~ag~~-~v~i~~~~Sd~h~~~~l~~-t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~ 239 (620)
++.-+++.++.+.+ ||.+-...=+-++..+++. +.+..++-+.+.++.+.++|+..+.+|.- -+|.....+..+.
T Consensus 110 v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K---sSdv~~~i~ayr~ 186 (346)
T TIGR00612 110 VRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK---ASDVAETVAAYRL 186 (346)
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHHH
Confidence 34445555666766 5666544445566777774 88888888999999999999877777763 2344444444443
Q ss_pred H
Q 007056 240 V 240 (620)
Q Consensus 240 ~ 240 (620)
+
T Consensus 187 l 187 (346)
T TIGR00612 187 L 187 (346)
T ss_pred H
Confidence 3
No 380
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=76.27 E-value=59 Score=34.05 Aligned_cols=136 Identities=20% Similarity=0.207 Sum_probs=66.2
Q ss_pred HHHHhHcCCCEEEEec-------CCCC-----h-hHH-HHHHHHHHHhcccccccCCccceEEeecccch-hhHHHHHHH
Q 007056 104 ARQLAKLGVDIIEAGF-------PAAS-----K-EDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAWEA 168 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGf-------P~~s-----~-~d~-e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~ea 168 (620)
|+...+-|+|.|=+-. -..| | .|. +.+..+++++...+. -.|++++.+-+.+ .+++.-++.
T Consensus 28 Ak~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~----~tPViaGv~atDP~~~~~~fl~~ 103 (268)
T PF09370_consen 28 AKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVK----DTPVIAGVCATDPFRDMDRFLDE 103 (268)
T ss_dssp HHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-S----SS-EEEEE-TT-TT--HHHHHHH
T ss_pred hHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhcc----CCCEEEEecCcCCCCcHHHHHHH
Confidence 6677788999887731 0001 1 121 344445554433222 2588999886654 688888999
Q ss_pred HhcCCCCEEEEE--ecCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHc
Q 007056 169 VKYAKRPRIHTF--IATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 243 (620)
Q Consensus 169 l~~ag~~~v~i~--~~~Sd~h~~~~l---~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a 243 (620)
++..|...|.=| +...|-+.+.+| +++- ++=.++++.|+++|+-.+-|. .+++. ++++.++
T Consensus 104 lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy----~~EVemi~~A~~~gl~T~~yv------f~~e~----A~~M~~A 169 (268)
T PF09370_consen 104 LKELGFSGVQNFPTVGLIDGQFRQNLEETGMGY----DREVEMIRKAHEKGLFTTAYV------FNEEQ----ARAMAEA 169 (268)
T ss_dssp HHHHT-SEEEE-S-GGG--HHHHHHHHHTT--H----HHHHHHHHHHHHTT-EE--EE-------SHHH----HHHHHHH
T ss_pred HHHhCCceEEECCcceeeccHHHHHHHhcCCCH----HHHHHHHHHHHHCCCeeeeee------cCHHH----HHHHHHc
Confidence 999999988777 233344443333 3332 333578899999997433232 23333 4455578
Q ss_pred CCcEEee--cCCcccc
Q 007056 244 GATTLNI--PDTVGIT 257 (620)
Q Consensus 244 Ga~~I~L--~DTvG~~ 257 (620)
|||.|++ .=|.|..
T Consensus 170 GaDiiv~H~GlT~gG~ 185 (268)
T PF09370_consen 170 GADIIVAHMGLTTGGS 185 (268)
T ss_dssp T-SEEEEE-SS-----
T ss_pred CCCEEEecCCccCCCC
Confidence 9998764 3444443
No 381
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=76.26 E-value=14 Score=38.04 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE---cCC---CCCCCCHHHHHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPE---DAGRSDRKFLYEI 236 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f---~~e---d~~r~d~e~l~~~ 236 (620)
...+++++..|+.+|.+..|=.+ +.-...++|..+.|++.+.+ +.+ +..+.+++.+.+.
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~~---------------~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~ 173 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYTP---------------ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEA 173 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCcH---------------HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHH
Confidence 44456666679999999888433 22235677888999874333 443 4668999999999
Q ss_pred HHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCC
Q 007056 237 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 274 (620)
Q Consensus 237 ~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~ 274 (620)
++++...++|.|.++.|+= ...++|..+-+.++
T Consensus 174 ~~~~~~~~aDAifisCTnL-----rt~~vi~~lE~~lG 206 (239)
T TIGR02990 174 ALAAFDPDADALFLSCTAL-----RAATCAQRIEQAIG 206 (239)
T ss_pred HHHhcCCCCCEEEEeCCCc-----hhHHHHHHHHHHHC
Confidence 9998888999999997763 45667888877664
No 382
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=76.24 E-value=31 Score=35.98 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=79.6
Q ss_pred HHHHHHhHcCCCEEEEec---------CCCChhHHHH----HHHHHHHhcccccccCCccceEEe--ec---ccchhhHH
Q 007056 102 DIARQLAKLGVDIIEAGF---------PAASKEDFEA----VRTIAKEVGNAVDAESGYVPVICG--LS---RCNERDIK 163 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGf---------P~~s~~d~e~----v~~i~~~~~~~~~~~~~l~~~i~~--~~---r~~~~dI~ 163 (620)
..|+.++++|+|.|=+|- +...+-..+. .+.+++-.++. + .++. |. ...+.-++
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~------~--vv~DmPf~sy~~s~e~av~ 98 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNA------F--VVADMPFGSYQASPEQAVR 98 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSS------E--EEEE--TTSSTSSHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCc------e--EEecCCcccccCCHHHHHH
Confidence 568899999999999983 4444433332 33333322222 1 1222 11 22344567
Q ss_pred HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE---EEEcCCC---------CCCC--C
Q 007056 164 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD---VEFSPED---------AGRS--D 229 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~---V~f~~ed---------~~r~--d 229 (620)
.|.+.++++|++.|.+-... ...+.|+.+.+.|+.. +-+.|.. .+|+ +
T Consensus 99 nA~rl~ke~GadaVKlEGg~------------------~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~ 160 (261)
T PF02548_consen 99 NAGRLMKEAGADAVKLEGGA------------------EIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAEE 160 (261)
T ss_dssp HHHHHHHTTT-SEEEEEBSG------------------GGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHHH
T ss_pred HHHHHHHhcCCCEEEeccch------------------hHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHHH
Confidence 78888898999999987652 2346677788888862 2223331 1233 3
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHH
Q 007056 230 RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 269 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l 269 (620)
...+++-++++.++|+..|.|- +.|.++.+.|..-
T Consensus 161 a~~l~~~A~ale~AGaf~ivlE-----~vp~~la~~It~~ 195 (261)
T PF02548_consen 161 AEKLLEDAKALEEAGAFAIVLE-----CVPAELAKAITEA 195 (261)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE-----SBBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccEEeee-----cCHHHHHHHHHHh
Confidence 4677777788889999988875 6788888887653
No 383
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=76.13 E-value=79 Score=34.63 Aligned_cols=188 Identities=16% Similarity=0.087 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEE---EE-ecCCCCh-hH-HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKLGVDII---EA-GFPAASK-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~I---Ev-GfP~~s~-~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
.+++++=-+++..+..-|||.| |. |.+..+| +| .+.+....+......-....+.++|.+- ..+-++++ +
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~---~~em~~ra-~ 212 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP---PTQLLERA-R 212 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC---HHHHHHHH-H
Confidence 5899999999999999999999 42 3333333 33 2334333332211000011233444432 22233333 4
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHH--------------------HHHHHHHHHHHHHcCCCEEEE-cCCCCC
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQV--------------------VEIARSMVKFARSLGCDDVEF-SPEDAG 226 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~--------------------l~~~~~~v~~a~~~G~~~V~f-~~ed~~ 226 (620)
..+++|.+.+.+...+.-.-.-..+.. ++. +....-.-+.+|-.|.+.+.| ++....
T Consensus 213 ~a~~~Ga~~vMv~~~~~G~~~~~~l~~--~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~g~~ 290 (364)
T cd08210 213 FAKEAGAGGVLIAPGLTGLDTFRELAE--DFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIFPNYGGRF 290 (364)
T ss_pred HHHHcCCCEEEeecccchHHHHHHHHh--cCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEeCCCcCCc
Confidence 445678887766544332111111110 111 111112445567778876666 443322
Q ss_pred CCCHHHHHHHHHHHHHcCCc-EEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCc
Q 007056 227 RSDRKFLYEILGEVIKVGAT-TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 289 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~-~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~ 289 (620)
..+++.+.++++.+..-... .-.+|--.|.+.|.++.++++.+-..+-- ..-=++|.|-|-
T Consensus 291 ~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~Dvil--~aGGgi~gHp~g 352 (364)
T cd08210 291 GFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPDVML--LIGGSLLRAGDD 352 (364)
T ss_pred cCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCcEEE--EccccccCCCCC
Confidence 34567777777765433211 22234448889998888887776532100 011367888774
No 384
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=76.07 E-value=55 Score=35.38 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=81.2
Q ss_pred HHHhcCCCCEEEEEecC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC-EEEEcCCCCC--CCCHHH
Q 007056 167 EAVKYAKRPRIHTFIAT--------SGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDAG--RSDRKF 232 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~--------Sd~--h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~-~V~f~~ed~~--r~d~e~ 232 (620)
+..+.+|.+.|.|-.+- |+. ++..++|=|.+.-.+.+.+.++.+|+. ... .|.++++|.. -.+++.
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e 228 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQD 228 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHH
Confidence 34566899999887652 442 445566777887777777888777765 221 2456765422 246788
Q ss_pred HHHHHHHHHHcCCcEEeecCCcccc-------CHHHHHHHHHHHHHhCCCCCceeE-EEecCCCcchHHHHHHHHHHhc-
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGIT-------MPTEFGKLIADIKANTPGIENVVI-STHCQNDLGLSTANTIAGACAG- 303 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~-------~P~~v~~li~~l~~~~~~~~~v~i-~~H~HND~GlAvANslaAv~aG- 303 (620)
..++++.+.++|+|.|.+. .|.. .|....++.+.+++.++ +|| ....-++ ...+..+++.|
T Consensus 229 ~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~----ipVi~~G~i~~----~~~a~~~l~~g~ 298 (337)
T PRK13523 229 YVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHAN----IATGAVGLITS----GAQAEEILQNNR 298 (337)
T ss_pred HHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcC----CcEEEeCCCCC----HHHHHHHHHcCC
Confidence 8899999999999999883 3321 12112356667777653 333 3333233 35566777776
Q ss_pred CcEE
Q 007056 304 ARQV 307 (620)
Q Consensus 304 A~~V 307 (620)
||.|
T Consensus 299 ~D~V 302 (337)
T PRK13523 299 ADLI 302 (337)
T ss_pred CChH
Confidence 6654
No 385
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.94 E-value=62 Score=33.18 Aligned_cols=122 Identities=11% Similarity=0.050 Sum_probs=67.6
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-----CCCCCC-----
Q 007056 161 DIKTAWEAVKYAKRPRIHTFIATSGIHMEH-KLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-----DAGRSD----- 229 (620)
Q Consensus 161 dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~-~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-----d~~r~d----- 229 (620)
.++.+++.++.+|.+.|.+... +.|... ...++. ..+.+..+.+++.|+....+++- ..+..+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~--~~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~ 90 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD--ESDERLARLDWSK----EERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRE 90 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC--CcccccccccCCH----HHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHH
Confidence 4566667777789998887543 222111 122332 23556677888899863333210 111122
Q ss_pred --HHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCC--CCCceeEEEecCCC
Q 007056 230 --RKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTP--GIENVVISTHCQND 288 (620)
Q Consensus 230 --~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~--~~~~v~i~~H~HND 288 (620)
.+++.++++.+..+|++.|+++.... ...+.....+++.+++..+ ...++.|.+|.|+.
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~ 156 (284)
T PRK13210 91 RALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCc
Confidence 35678888889999999999862211 1123444444444443211 11147888888853
No 386
>PLN02417 dihydrodipicolinate synthase
Probab=75.92 E-value=45 Score=34.88 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC-CcEEeecCCccccCHHH
Q 007056 200 VEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNIPDTVGITMPTE 261 (620)
Q Consensus 200 l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG-a~~I~L~DTvG~~~P~~ 261 (620)
.+.+.+.++.|++.|.+.|...|....+.+.+.+.+.++.+.++. .-..++|...|...+.+
T Consensus 82 t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~P~~tg~~l~~~ 144 (280)
T PLN02417 82 TREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNVPGRTGQDIPPE 144 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEChhHhCcCCCHH
Confidence 345666788888899887766666666777788888888887765 22345666777665544
No 387
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=75.88 E-value=40 Score=37.02 Aligned_cols=87 Identities=11% Similarity=0.018 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHH-HHH
Q 007056 218 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 296 (620)
Q Consensus 218 V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANs 296 (620)
..|.+..+ -.+++.-.+-++.+.+.+.+-+.|.=.+|. ..+++.+++......+|. +.|..+ +|.|. ..-
T Consensus 199 ~lfgiVQG-G~~~dLR~~Sa~~l~~~~~~GyaIGG~vge-~~~~~~~il~~~~~~LP~--~kPRyL-----mGvG~P~di 269 (372)
T PRK01008 199 SMYGVIHG-GIDPDQRKIGCKFVEDLPFDGSAIGGSLGK-NLQEMVEVVGVTTSNLSK--ERPVHL-----LGIGDLPSI 269 (372)
T ss_pred eEEEEecC-CCCHHHHHHHHHHHHhCCCCEEEECCCCCC-CHHHHHHHHHHHHhhCCC--CCCeEE-----ecCCCHHHH
Confidence 45666433 456677777888889999999998886664 778999999999999986 445433 45555 678
Q ss_pred HHHHHhcCcEEeecccc
Q 007056 297 IAGACAGARQVEVTING 313 (620)
Q Consensus 297 laAv~aGA~~Vd~Ti~G 313 (620)
+.|+..|+|.+||+.-=
T Consensus 270 ~~~V~~GvD~FDcv~Pt 286 (372)
T PRK01008 270 WATVGFGIDSFDSSYPT 286 (372)
T ss_pred HHHHHhCCCeeeeccch
Confidence 99999999999998763
No 388
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=75.79 E-value=49 Score=37.49 Aligned_cols=165 Identities=10% Similarity=0.072 Sum_probs=94.4
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecCCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-CCCC-CCHH
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHM-EHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGR-SDRK 231 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~-~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-d~~r-~d~e 231 (620)
+|.+.+|+....+++..+|...+.+..+++ .+. -+-++-++.|-++.+++.+.. --+....-+-- -+++ ++.+
T Consensus 30 tr~~t~d~l~ia~~ld~~G~~siE~wGGAt-fd~~~rfl~edpwerlr~~r~~~~n---t~lqmLlRG~n~vgy~~ypdd 105 (468)
T PRK12581 30 TRLSIEDMLPVLTILDKIGYYSLECWGGAT-FDACIRFLNEDPWERLRTLKKGLPN---TRLQMLLRGQNLLGYRHYADD 105 (468)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEecCCcc-hhhhhcccCCCHHHHHHHHHHhCCC---CceeeeeccccccCccCCcch
Confidence 466788888888888889999998875543 232 233455666555555544432 21110000110 1222 2335
Q ss_pred HHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEe---cCCCcchHHHHHHHHHHhcCcEEe
Q 007056 232 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH---CQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H---~HND~GlAvANslaAv~aGA~~Vd 308 (620)
.+..+++.+.+.|++++.+.|..- ....+...|+.+++.-... ...++.= -| +.-.-+.-+..+.++||+.|-
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~~G~~~-~~~i~yt~sp~~-t~~y~~~~a~~l~~~Gad~I~ 181 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFDALN--DPRNIQQALRAVKKTGKEA-QLCIAYTTSPVH-TLNYYLSLVKELVEMGADSIC 181 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEcccCC--CHHHHHHHHHHHHHcCCEE-EEEEEEEeCCcC-cHHHHHHHHHHHHHcCCCEEE
Confidence 566678889999999999999544 7777888888888742110 1122210 12 333445556667788999863
Q ss_pred eccccccCCcCcccHHH---HHHHHHh
Q 007056 309 VTINGIGERAGNASLEE---VVMAFKC 332 (620)
Q Consensus 309 ~Ti~GlGERaGNa~lEe---vv~~L~~ 332 (620)
. .-=+|.+.-++ ++..|+.
T Consensus 182 I-----kDtaG~l~P~~v~~Lv~alk~ 203 (468)
T PRK12581 182 I-----KDMAGILTPKAAKELVSGIKA 203 (468)
T ss_pred E-----CCCCCCcCHHHHHHHHHHHHh
Confidence 2 23345554444 4444443
No 389
>PLN02389 biotin synthase
Probab=75.67 E-value=13 Score=40.88 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcC--CCCCC--CCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSP--EDAGR--SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 269 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~--ed~~r--~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l 269 (620)
++.+|+++. ++.+++.|...+++.. -+... .+.+++.++++.+.+.|. .++=|.|.++++++.+|-+.
T Consensus 116 Ls~EeIl~~----a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l---~i~~s~G~l~~E~l~~LkeA- 187 (379)
T PLN02389 116 MSKDDVLEA----AKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM---EVCCTLGMLEKEQAAQLKEA- 187 (379)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc---EEEECCCCCCHHHHHHHHHc-
Confidence 566776664 4455667876544421 01111 346888899988876554 35568998888877766543
Q ss_pred HHhCCCCCceeEE----------EecCCCcchHHHHHHHHHHhcCcEEeeccccccC
Q 007056 270 KANTPGIENVVIS----------THCQNDLGLSTANTIAGACAGARQVEVTINGIGE 316 (620)
Q Consensus 270 ~~~~~~~~~v~i~----------~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGE 316 (620)
+.+.+.+. +|+..++---+.....|-++|...--+-|.|+||
T Consensus 188 -----Gld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgE 239 (379)
T PLN02389 188 -----GLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGE 239 (379)
T ss_pred -----CCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCC
Confidence 11112222 2233355555667777888898777778899987
No 390
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=75.43 E-value=1.1e+02 Score=31.95 Aligned_cols=137 Identities=21% Similarity=0.207 Sum_probs=86.3
Q ss_pred CCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecc---cchhhHHHHHHHHhcCCCCEEEEEecCCHHHH
Q 007056 112 VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR---CNERDIKTAWEAVKYAKRPRIHTFIATSGIHM 188 (620)
Q Consensus 112 vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r---~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~ 188 (620)
+|.|.+|- -+-+.++.++.+.+.- . |++ +-| ...++...+.|-+...|.+.|-+.---. .+
T Consensus 93 vDilQIgA--rn~rn~~LL~a~g~t~-k---------pV~--lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf- 156 (258)
T TIGR01362 93 VDIIQIPA--FLCRQTDLLVAAAKTG-R---------IVN--VKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SF- 156 (258)
T ss_pred CcEEEeCc--hhcchHHHHHHHhccC-C---------eEE--ecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-Cc-
Confidence 66666653 2334566666665531 1 111 122 2456666777877778888775542221 11
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC----------CCCCHHHHHHHHHHHHHcCCcEEe---------
Q 007056 189 EHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA----------GRSDRKFLYEILGEVIKVGATTLN--------- 249 (620)
Q Consensus 189 ~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~----------~r~d~e~l~~~~~~~~~aGa~~I~--------- 249 (620)
+.++ ..++ ...+-..|+.++. |.|+|--+ +-=..+++..++++++.+|||-+-
T Consensus 157 ----~y~r-~~~D--~~~ip~~k~~~~P-Vi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~ 228 (258)
T TIGR01362 157 ----GYNN-LVVD--MRSLPIMRELGCP-VIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKN 228 (258)
T ss_pred ----CCCC-cccc--hhhhHHHHhcCCC-EEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccc
Confidence 1110 0111 1345555777886 88877532 234679999999999999998664
Q ss_pred -ecCCccccCHHHHHHHHHHHHHh
Q 007056 250 -IPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 250 -L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
++|---.++|+++.++++.+++-
T Consensus 229 AlsDg~q~l~~~~~~~ll~~l~~i 252 (258)
T TIGR01362 229 AKSDGPNMLPLSELEGLLEKLLAI 252 (258)
T ss_pred cCCCccccCCHHHHHHHHHHHHHH
Confidence 57999999999999999998863
No 391
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=75.31 E-value=25 Score=37.14 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE-Eeec-CCccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIP-DTVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~-I~L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|+. .+.+.+..+++++.+.++.. |.+. -+..++-.+.+..++..+.++. ++|
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~----~VP 74 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNI-----HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTY----NMP 74 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHC----CCC
Confidence 45678889999885446766 57799999999999998764 4433 3334455566888888888776 377
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeeccccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 314 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~Gl 314 (620)
+.+|. |-|--......|+++|.+- +|+|-..+
T Consensus 75 ValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 108 (282)
T TIGR01858 75 LALHL--DHHESLDDIRQKVHAGVRSAMIDGSHFPF 108 (282)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCCCH
Confidence 88655 6666678899999999986 58775544
No 392
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=75.30 E-value=71 Score=33.39 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=72.4
Q ss_pred chhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC----------CC
Q 007056 158 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA----------GR 227 (620)
Q Consensus 158 ~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~----------~r 227 (620)
..++...+.|-+...|.+.|-+.---. .+ +.++ .+++ ...+-..|+.++. |.|+|--+ +-
T Consensus 136 t~~e~~~aaeyi~~~Gn~~vilcERG~-tf-----~y~r-~~~D--~~~vp~~k~~~lP-Vi~DpSHsvq~pg~~~~~s~ 205 (264)
T PRK05198 136 APWDMKNVVDKVREAGNDKIILCERGT-SF-----GYNN-LVVD--MRGLPIMRETGAP-VIFDATHSVQLPGGQGGSSG 205 (264)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeCCC-Cc-----CCCC-eeec--hhhhHHHhhCCCC-EEEeCCccccCCCCCCCCCC
Confidence 466777777877777877765542222 11 1110 1112 1445666778875 88877532 23
Q ss_pred CCHHHHHHHHHHHHHcCCcEEe----------ecCCccccCHHHHHHHHHHHHHh
Q 007056 228 SDRKFLYEILGEVIKVGATTLN----------IPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~----------L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
=..+|+..++++++.+|||-+- ++|---.++|+++.++++.+++-
T Consensus 206 G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i 260 (264)
T PRK05198 206 GQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQLKAI 260 (264)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHH
Confidence 4678999999999999998664 67999999999999999998863
No 393
>PRK09875 putative hydrolase; Provisional
Probab=75.25 E-value=98 Score=32.82 Aligned_cols=147 Identities=13% Similarity=0.156 Sum_probs=75.3
Q ss_pred HHHHHHHhHcCC--CEE-EEecC--CCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCCC
Q 007056 101 LDIARQLAKLGV--DII-EAGFP--AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 175 (620)
Q Consensus 101 l~Ia~~L~~~Gv--d~I-EvGfP--~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~~ 175 (620)
.+|-..++..|+ -.| |+|.- ...|.+.+.++..+.....+ |. | |..++.......+. ++.+++.|++
T Consensus 107 ~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~T-----G~-p-i~~Ht~~~~~g~e~-l~il~e~Gvd 178 (292)
T PRK09875 107 DEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQT-----GR-P-ISTHTSFSTMGLEQ-LALLQAHGVD 178 (292)
T ss_pred HHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH-----CC-c-EEEcCCCccchHHH-HHHHHHcCcC
Confidence 344455553444 258 99963 35777777777665542111 22 2 23332221122222 4556666774
Q ss_pred --EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC-CCCCCHHHHHHHHHHHHHcC-CcEEeec
Q 007056 176 --RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSDRKFLYEILGEVIKVG-ATTLNIP 251 (620)
Q Consensus 176 --~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed-~~r~d~e~l~~~~~~~~~aG-a~~I~L~ 251 (620)
+|.+ . |+. .+.+.+. .+.+.+.|+ .++|+... ....+.+...+.++.+.+.| +++|.|+
T Consensus 179 ~~rvvi--~----H~d--~~~d~~~--------~~~l~~~G~-~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS 241 (292)
T PRK09875 179 LSRVTV--G----HCD--LKDNLDN--------ILKMIDLGA-YVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLS 241 (292)
T ss_pred cceEEE--e----CCC--CCCCHHH--------HHHHHHcCC-EEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEe
Confidence 4433 2 322 1233332 333445787 68885321 11234456678888888999 9998886
Q ss_pred CCccccCH----------HHHHHHHHHHHHh
Q 007056 252 DTVGITMP----------TEFGKLIADIKAN 272 (620)
Q Consensus 252 DTvG~~~P----------~~v~~li~~l~~~ 272 (620)
=-.|.-.+ .-+..++..++++
T Consensus 242 ~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~ 272 (292)
T PRK09875 242 MDITRRSHLKANGGYGYDYLLTTFIPQLRQS 272 (292)
T ss_pred CCCCCcccccccCCCChhHHHHHHHHHHHHc
Confidence 33343322 3345555555553
No 394
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=75.23 E-value=30 Score=35.37 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=62.4
Q ss_pred hHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE-c--CCCC---CC-------
Q 007056 161 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-S--PEDA---GR------- 227 (620)
Q Consensus 161 dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f-~--~ed~---~r------- 227 (620)
+++..++.++.+|.+.|.+..+. ..+ ..++-+.++++|++ +.. + ..+. .+
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~~~---------~~~-------~~~~~~~l~~~gl~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMFPY---------DYD-------IEELKQVLASNKLE-HTLHNLPAGDWAAGERGIACIPG 78 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCC---------CCC-------HHHHHHHHHHcCCc-EEEEcCCCCccccCcCccccCCC
Confidence 46666777778899999986432 112 33445567789986 432 1 1110 00
Q ss_pred -C--CHHHHHHHHHHHHHcCCcEEeecC--CccccCHHH-HHHHHHHHHH---hCCCCCceeEEEecCCC
Q 007056 228 -S--DRKFLYEILGEVIKVGATTLNIPD--TVGITMPTE-FGKLIADIKA---NTPGIENVVISTHCQND 288 (620)
Q Consensus 228 -~--d~e~l~~~~~~~~~aGa~~I~L~D--TvG~~~P~~-v~~li~~l~~---~~~~~~~v~i~~H~HND 288 (620)
. ..+.+.++++.+.++|+..|+++- ..+...+.+ ...+++.+++ .... .++.|++|.||.
T Consensus 79 ~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~Gv~l~lE~~n~ 147 (258)
T PRK09997 79 REEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMK-EDILLLIEPINH 147 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEEEEEeCCC
Confidence 0 135678888899999999887742 111223344 2333333332 1111 148899998875
No 395
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.21 E-value=82 Score=32.79 Aligned_cols=57 Identities=5% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHc-C--Cc-EEeecCCccccCHHHH
Q 007056 205 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-G--AT-TLNIPDTVGITMPTEF 262 (620)
Q Consensus 205 ~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a-G--a~-~I~L~DTvG~~~P~~v 262 (620)
+.++.+.+.|...+.+.= ..+...|+.+.++++++.+. + .. .+=.=|+.|.++-+..
T Consensus 142 ~~~~~~~~~g~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~l 202 (266)
T cd07944 142 ELLELVNEIKPDVFYIVD-SFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTL 202 (266)
T ss_pred HHHHHHHhCCCCEEEEec-CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHH
Confidence 344445555665443321 24566677777777666543 2 11 2233366666554433
No 396
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=75.19 E-value=12 Score=39.97 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHH----HHHHHhCCCCCceeEEEecCCCcchHHHHHHHH-HHhc
Q 007056 232 FLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLI----ADIKANTPGIENVVISTHCQNDLGLSTANTIAG-ACAG 303 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li----~~l~~~~~~~~~v~i~~H~HND~GlAvANslaA-v~aG 303 (620)
.+.+.+++..++||+.|.+.|+.+ .+.|+++.+++ +.+.+.+.. . +..+|++-+.. +.+.. .+.|
T Consensus 181 ~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~--~-~~ilH~cG~~~----~~l~~~~~~g 253 (339)
T PRK06252 181 FCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKG--L-PTILHICGDLT----SILEEMADCG 253 (339)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhcc--C-CcEEEECCCch----HHHHHHHhcC
Confidence 445666677789999999999875 67999988776 334444432 1 45678764432 22332 3458
Q ss_pred CcEEeeccccccCCcCcccHHHHHHHH
Q 007056 304 ARQVEVTINGIGERAGNASLEEVVMAF 330 (620)
Q Consensus 304 A~~Vd~Ti~GlGERaGNa~lEevv~~L 330 (620)
++.++ +.++ .+++++...+
T Consensus 254 ~d~~~-----~d~~---~dl~~~~~~~ 272 (339)
T PRK06252 254 FDGIS-----IDEK---VDVKTAKENV 272 (339)
T ss_pred CCeec-----cCCC---CCHHHHHHHh
Confidence 87653 2332 3676665443
No 397
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=75.17 E-value=87 Score=35.55 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCHHHHHHHHHHHHHc----C-CcEEeecCCccccCHHHHHHHH
Q 007056 193 RKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKV----G-ATTLNIPDTVGITMPTEFGKLI 266 (620)
Q Consensus 193 ~~t~ee~l~~~~~~v~~a~~~G~~~V~f-~~ed~~r~d~e~l~~~~~~~~~a----G-a~~I~L~DTvG~~~P~~v~~li 266 (620)
.++.||+++. ++.+++.|...+.+ +.++-...+.+|+.++++.+.+. | ..+|++. +|.++.+++..|-
T Consensus 114 ~Ls~EEI~~e----a~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~in--ig~lt~eey~~Lk 187 (469)
T PRK09613 114 KLTQEEIREE----VKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVN--IAPTTVENYKKLK 187 (469)
T ss_pred ECCHHHHHHH----HHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEE--eecCCHHHHHHHH
Confidence 3566766554 45567789875544 66665667899999999999874 3 2355553 7888888888775
Q ss_pred HHHHHh------CCCCCceeEEEec---CCCcchHHHHHHHHHHhcCc-EEeeccccccC
Q 007056 267 ADIKAN------TPGIENVVISTHC---QNDLGLSTANTIAGACAGAR-QVEVTINGIGE 316 (620)
Q Consensus 267 ~~l~~~------~~~~~~v~i~~H~---HND~GlAvANslaAv~aGA~-~Vd~Ti~GlGE 316 (620)
+.=... .-+. ..-=.+|. .-|+--=+..--.|.++|.+ .=-+.+.|||+
T Consensus 188 eaGv~~~~l~qETY~~-ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge 246 (469)
T PRK09613 188 EAGIGTYQLFQETYHK-PTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYD 246 (469)
T ss_pred HcCCCEEEeccccCCH-HHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCC
Confidence 431000 0000 00012333 23466667777888899998 44678999998
No 398
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=75.17 E-value=27 Score=36.87 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eec-CCccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIP-DTVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|+. .+.+.+..+++++.+.++..| .+. .+..++-.+.+..++..+.++. ++|
T Consensus 6 ~~~~l~~A~~~~yaV~AfN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~----~VP 76 (284)
T PRK12737 6 TKNMLKKAQAEGYAVPAFNI-----HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKY----NIP 76 (284)
T ss_pred HHHHHHHHHHcCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHC----CCC
Confidence 45778889999875346666 577999999999999987643 333 2333444566778888887776 367
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeecccccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIG 315 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~GlG 315 (620)
+.+|. |-|.-......|+++|.+- +|+|-..+-
T Consensus 77 ValHL--DH~~~~e~i~~ai~~GftSVMiDgS~lp~e 111 (284)
T PRK12737 77 LALHL--DHHEDLDDIKKKVRAGIRSVMIDGSHLSFE 111 (284)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCCCHH
Confidence 87654 6676788999999999986 588876554
No 399
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=75.16 E-value=55 Score=36.81 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHhHc--CCCEEEEec--CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 94 TLTSKEKLDIARQLAKL--GVDIIEAGF--PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~--Gvd~IEvGf--P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
..+.+..++=++.+.+. |++.|-.+- +...+ +.+.++.+.+... ++ ...+.+|... + +..++.+
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~---~~~~~l~~~l~~~-----~i--~~~~~~~~~~-~-~e~l~~l 293 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDDK---PRAEEIARKLGPL-----GV--TWSCNARANV-D-YETLKVM 293 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCH---HHHHHHHHHHhhc-----Cc--eEEEEecCCC-C-HHHHHHH
Confidence 45777777666666554 888887652 22222 3333443332110 11 2223334321 1 2345667
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHcCCcEE
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
+.+|..+|.+-+=+.+-.+..+++|.. ..+.+.++++.++++|+. +..+..-+ -..+.+.+.+.++.+.+.+.+.+
T Consensus 294 ~~aG~~~v~iGiES~s~~~L~~~~K~~--~~~~~~~~i~~~~~~Gi~-v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~ 370 (472)
T TIGR03471 294 KENGLRLLLVGYESGDQQILKNIKKGL--TVEIARRFTRDCHKLGIK-VHGTFILGLPGETRETIRKTIDFAKELNPHTI 370 (472)
T ss_pred HHcCCCEEEEcCCCCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCe-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCce
Confidence 778999888755444444455666542 345677889999999985 43322211 13456778888888888888766
Q ss_pred eecCCccccCHHHHHHHHHHHHHh
Q 007056 249 NIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 249 ~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
.+ ..++|.-=..+.+.+.++
T Consensus 371 ~~----~~l~P~PGT~l~~~~~~~ 390 (472)
T TIGR03471 371 QV----SLAAPYPGTELYDQAKQN 390 (472)
T ss_pred ee----eecccCCCcHHHHHHHHC
Confidence 43 456665545566555543
No 400
>PF08502 LeuA_dimer: LeuA allosteric (dimerisation) domain; InterPro: IPR013709 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate synthase, which catalyses the first committed step in the leucine biosynthetic pathway []. This domain, is an internally duplicated structure with a novel fold []. It comprises two similar units that are arranged such that the two -helices pack together in the centre, crossing at an angle of 34 degrees, sandwiched between the two three-stranded, antiparallel beta-sheets. The overall domain is thus constructed as a beta-alpha-beta three-layer sandwich []. ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process; PDB: 3HQ1_A 3HPZ_B 1SR9_A 3FIG_B 3HPS_A 3F6G_A 3F6H_A.
Probab=75.09 E-value=22 Score=32.91 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=38.9
Q ss_pred eEEEeeEEEEecc---CCeeEEEEEEEccCCeEEEEEEEeCCHHHHHHHHHHHhh
Q 007056 476 VWKLLDMQVTCGT---LGLSTATVKLMDANGEEHVACSTGTGPVDSAYKAVDLIV 527 (620)
Q Consensus 476 ~~~L~~~~v~~g~---~~~~~AtV~l~~~dG~~~~~~a~G~GPVdA~~~AL~~~~ 527 (620)
.++|.+|++..-+ +....+.|++...||+.....|...-.+.|..+|+-.++
T Consensus 75 ~i~l~dy~~~al~~gsda~a~a~V~i~~~~g~~~~G~g~~~Di~~As~~A~~~Ai 129 (133)
T PF08502_consen 75 DIELIDYSEHALGSGSDAQAEAYVEIEDEDGRTVWGVGIDTDIVEASLKAYLSAI 129 (133)
T ss_dssp EEEEEEEEEEESTTSTT-EEEEEEEEEE-GGGEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeccCCCCcEEEEEEEEEECCCcEEEEEEECCCHHHHHHHHHHHHH
Confidence 6899999998833 345678888875688888888888888887777776554
No 401
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.06 E-value=53 Score=35.92 Aligned_cols=135 Identities=17% Similarity=0.027 Sum_probs=81.6
Q ss_pred HHHhcCCCCEEEEEecCC----------HHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---EEEEcCC---CC---C
Q 007056 167 EAVKYAKRPRIHTFIATS----------GIHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPE---DA---G 226 (620)
Q Consensus 167 eal~~ag~~~v~i~~~~S----------d~h~~~~l~~t~ee~l~~~~~~v~~a~~~-G~~---~V~f~~e---d~---~ 226 (620)
+..+.+|.+.|.+-.+-. --++...+|=+.++-.+.+.++++.+|+. |-+ .|.++++ +. .
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence 334668999987765541 22344456778888888888999988885 422 2456763 21 1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCcc-ccCHHH---HHHHHHHHHHhCCCCCceeEEEecCCCc-------------
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTVG-ITMPTE---FGKLIADIKANTPGIENVVISTHCQNDL------------- 289 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTvG-~~~P~~---v~~li~~l~~~~~~~~~v~i~~H~HND~------------- 289 (620)
-.+++...++++.+.++|+|.|.+.- | +..|.. -..+...+++.++ +++...+--+.
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~----~pv~~~G~i~~~~~~~~~~~~~~~ 304 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTG----LPTITVGSVGLDGDFIGAFAGDEG 304 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcC----CCEEEECCcccccccccccccccc
Confidence 25678888999999999999887732 3 112210 1245566677653 45554443210
Q ss_pred --chHHHHHHHHHHhc-CcEE
Q 007056 290 --GLSTANTIAGACAG-ARQV 307 (620)
Q Consensus 290 --GlAvANslaAv~aG-A~~V 307 (620)
-.....+..+++.| ||.|
T Consensus 305 ~~~~~~~~a~~~l~~g~~D~V 325 (361)
T cd04747 305 ASPASLDRLLERLERGEFDLV 325 (361)
T ss_pred cccCCHHHHHHHHHCCCCCee
Confidence 02335566777766 6654
No 402
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=74.99 E-value=90 Score=32.92 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhHc---CCCEEEEe--cCCC-----ChhHHHHHHHHHHHhcccccccCCccceEEeecc-cchhhHHHH
Q 007056 97 SKEKLDIARQLAKL---GVDIIEAG--FPAA-----SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTA 165 (620)
Q Consensus 97 ~~~Kl~Ia~~L~~~---Gvd~IEvG--fP~~-----s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a 165 (620)
.++-.+.++.+.+. |+|.||+- .|.. .-.|.+.+.+|.+.+...+ -.|.++=+.. ....++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-----~iPv~vKl~p~~~~~~~~~~ 176 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-----SIPVGVKTPPYTDPAQFDTL 176 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHHH
Confidence 78888999999885 79999994 4542 1124566666665543321 1232222211 122345555
Q ss_pred HHHHhcC--CCCEEEEEecCC---HHHHH-HH--h-------CCCHHHHHHHHHHHHHHHHHc-C--CCEEEEcCCCCCC
Q 007056 166 WEAVKYA--KRPRIHTFIATS---GIHME-HK--L-------RKTKQQVVEIARSMVKFARSL-G--CDDVEFSPEDAGR 227 (620)
Q Consensus 166 ~eal~~a--g~~~v~i~~~~S---d~h~~-~~--l-------~~t~ee~l~~~~~~v~~a~~~-G--~~~V~f~~ed~~r 227 (620)
.+.+..+ |++.|.++..+. .+|.+ .. + +.|-......+.+.|+.+++. + +. |.- -++=
T Consensus 177 a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ip-Iig---~GGI 252 (294)
T cd04741 177 AEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQ-IIG---VGGV 252 (294)
T ss_pred HHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCC-EEE---eCCC
Confidence 5666666 888888776653 23421 11 1 234333344455566665543 2 33 322 2344
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHH
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKA 271 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~ 271 (620)
.+.+.+.+++. +||+.+-++-..=.--|+-+.++.+.|.+
T Consensus 253 ~s~~da~e~l~----aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 253 LDGRGAFRMRL----AGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred CCHHHHHHHHH----cCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 66666666553 79999999877665679988888887765
No 403
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=74.99 E-value=11 Score=38.09 Aligned_cols=71 Identities=17% Similarity=0.086 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHH
Q 007056 194 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 268 (620)
Q Consensus 194 ~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~ 268 (620)
+|.+|+++.+.+--.+.+..|- -|.||--.. -.-++|+.++++.+.+.|.. +.-||+|+..++.+.++...
T Consensus 19 ~t~eel~~~~~~~~~f~~~sgg-GVt~SGGEP-llq~~fl~~l~~~~k~~gi~--~~leTnG~~~~~~~~~l~~~ 89 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGG-GVTLSGGEV-LMQAEFATRFLQRLRLWGVS--CAIETAGDAPASKLLPLAKL 89 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCC-EEEEeCchH-HcCHHHHHHHHHHHHHcCCC--EEEECCCCCCHHHHHHHHHh
Confidence 5788888887776666654433 377854222 23479999999999998853 34599999988877766554
No 404
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=74.97 E-value=1.3e+02 Score=32.56 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCc
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTV 254 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTv 254 (620)
.+.+.+.++++++.++|+|.|.+-.|.
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 344567888999999999999888775
No 405
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.84 E-value=59 Score=33.59 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHc-CC--cEEeecCCccccCHHHHHH
Q 007056 205 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GA--TTLNIPDTVGITMPTEFGK 264 (620)
Q Consensus 205 ~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a-Ga--~~I~L~DTvG~~~P~~v~~ 264 (620)
+.++.+.+.|.+.+.+ +-..+...|+.+.++++.+.+. +. -.+=.=||.|.++-+-+..
T Consensus 145 ~~~~~~~~~G~d~i~l-~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laA 206 (263)
T cd07943 145 EQAKLMESYGADCVYV-TDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAA 206 (263)
T ss_pred HHHHHHHHcCCCEEEE-cCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHH
Confidence 3444455566653333 2134456677777777766553 32 1222237777665554443
No 406
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=74.73 E-value=17 Score=39.58 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=64.0
Q ss_pred chhhH-HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHH
Q 007056 158 NERDI-KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 235 (620)
Q Consensus 158 ~~~dI-~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~ 235 (620)
+++++ +.-++.++.+|+.+|.+-+=+.+-.....+++.. ..+.+.++++.+++.|+..|.++...+ ..-+.+.+.+
T Consensus 97 ~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~ 174 (370)
T PRK06294 97 NPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIV 174 (370)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHH
Confidence 45555 2346778889999999977666666667777642 345677789999999986455443322 2346778888
Q ss_pred HHHHHHHcCCcEEee
Q 007056 236 ILGEVIKVGATTLNI 250 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L 250 (620)
-++.+.+.+++.|.+
T Consensus 175 ~l~~~~~l~~~~is~ 189 (370)
T PRK06294 175 DLHQAITLPITHISL 189 (370)
T ss_pred HHHHHHccCCCeEEE
Confidence 899999999987765
No 407
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=74.58 E-value=1.6e+02 Score=34.14 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCc-cceEEee----------------cc
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGL----------------SR 156 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~~----------------~r 156 (620)
...++.-++=+..|.++|.+++=+..| +.++.+.++.|.+.+... |+ +|-++.. .|
T Consensus 41 T~D~~atv~Qi~~L~~aGceiVRvtvp--~~~~A~al~~I~~~L~~~-----g~~iPLVADIHF~~~~A~~a~~~vdkiR 113 (606)
T PRK00694 41 TTDVDGTVRQICALQEWGCDIVRVTVQ--GLKEAQACEHIKERLIQQ-----GISIPLVADIHFFPQAAMHVADFVDKVR 113 (606)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHHHHhcc-----CCCCCEEeecCCChHHHHHHHHhcCceE
Confidence 345666677788899999999999887 467778888887752110 11 1211110 01
Q ss_pred cc----------------------------hhhHHHHHHHHhcCCCC-EEEEE-ecCCHHHHHHHhCCCHHHHHHHHHHH
Q 007056 157 CN----------------------------ERDIKTAWEAVKYAKRP-RIHTF-IATSGIHMEHKLRKTKQQVVEIARSM 206 (620)
Q Consensus 157 ~~----------------------------~~dI~~a~eal~~ag~~-~v~i~-~~~Sd~h~~~~l~~t~ee~l~~~~~~ 206 (620)
-| ++.+..-++.-++.+++ ||.+- .+.| -.+..+++-|++-.++-+.+.
T Consensus 114 INPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~-~~i~~~yG~tpegmVeSAle~ 192 (606)
T PRK00694 114 INPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLS-ERVMQRYGDTIEGMVYSALEY 192 (606)
T ss_pred ECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCch-HHHHHHhCCCHHHHHHHHHHH
Confidence 11 11222334444555665 56654 3444 455567888999999999999
Q ss_pred HHHHHHcCCCEEEEcCC
Q 007056 207 VKFARSLGCDDVEFSPE 223 (620)
Q Consensus 207 v~~a~~~G~~~V~f~~e 223 (620)
++.+.++|+..+.||.-
T Consensus 193 ~~i~e~~~f~diviS~K 209 (606)
T PRK00694 193 IEVCEKLDYRDVVFSMK 209 (606)
T ss_pred HHHHHHCCCCcEEEEEE
Confidence 99999999988888773
No 408
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=74.56 E-value=24 Score=36.65 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=56.8
Q ss_pred EEEcCC---CCCC-CCHHHHHHHHHHHHHcCCcEEeec------CCccccCHHHHHHH---HHHHHHhCCCCCceeEEEe
Q 007056 218 VEFSPE---DAGR-SDRKFLYEILGEVIKVGATTLNIP------DTVGITMPTEFGKL---IADIKANTPGIENVVISTH 284 (620)
Q Consensus 218 V~f~~e---d~~r-~d~e~l~~~~~~~~~aGa~~I~L~------DTvG~~~P~~v~~l---i~~l~~~~~~~~~v~i~~H 284 (620)
+..+|+ |+++ .+++.+++.++...+.||+.|-+. +..+...-+|+.++ |+.+++.+ +++|++=
T Consensus 7 lN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSID 82 (257)
T cd00739 7 LNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL----DVLISVD 82 (257)
T ss_pred EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEe
Confidence 344554 4454 688999999999999999999883 34444445555554 56666554 3678765
Q ss_pred cCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 285 CQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 285 ~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
.=| ..-..+|+++|++.|+.-
T Consensus 83 T~~-----~~v~e~al~~G~~iINdi 103 (257)
T cd00739 83 TFR-----AEVARAALEAGADIINDV 103 (257)
T ss_pred CCC-----HHHHHHHHHhCCCEEEeC
Confidence 443 344577888999998743
No 409
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=74.43 E-value=6.2 Score=42.53 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-CccccCHHHHHHHH
Q 007056 231 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI 266 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~D-TvG~~~P~~v~~li 266 (620)
+.+.+++++..++||+.|.++| +.+.+.|+++.+++
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~ 222 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFV 222 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHH
Confidence 4566777777889999999999 56677888877654
No 410
>PLN02433 uroporphyrinogen decarboxylase
Probab=74.42 E-value=1.1e+02 Score=33.01 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHcCCCEEEEecCC---CChhHHH-----HHHHHHHHh
Q 007056 98 KEKLDIARQLAKLGVDIIEAGFPA---ASKEDFE-----AVRTIAKEV 137 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvGfP~---~s~~d~e-----~v~~i~~~~ 137 (620)
+.-+++++.+.++|++.|.+.-|. -+|++|+ ..++|.+.+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i 226 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEV 226 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 334566667778999999887442 3567663 234555543
No 411
>PRK02227 hypothetical protein; Provisional
Probab=74.41 E-value=46 Score=34.29 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=53.3
Q ss_pred HHHHHcCCcEEeecC----CccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecccc
Q 007056 238 GEVIKVGATTLNIPD----TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 313 (620)
Q Consensus 238 ~~~~~aGa~~I~L~D----TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~G 313 (620)
..+.+.|+|.|-+.| ..|...|+.+++++..+....|= +..|+ -+-.+-|....-++.+...|+++|-+.+.|
T Consensus 14 ~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pv--SAtiG-D~p~~p~~~~~aa~~~a~~GvDyVKvGl~~ 90 (238)
T PRK02227 14 LEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPV--SATIG-DVPYKPGTISLAALGAAATGADYVKVGLYG 90 (238)
T ss_pred HHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCc--eeecc-CCCCCchHHHHHHHHHHhhCCCEEEEcCCC
Confidence 445678999999997 46788899888888877754321 12222 122344778888888889999999988876
Q ss_pred cc
Q 007056 314 IG 315 (620)
Q Consensus 314 lG 315 (620)
..
T Consensus 91 ~~ 92 (238)
T PRK02227 91 GK 92 (238)
T ss_pred CC
Confidence 43
No 412
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=74.12 E-value=1.2e+02 Score=31.83 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHhH-cCCCEEEE-e----cCCCChhHHHH-HHHHHHHhcccccccCCccceEEeecccchhhHHHHHH
Q 007056 95 LTSKEKLDIARQLAK-LGVDIIEA-G----FPAASKEDFEA-VRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~-~Gvd~IEv-G----fP~~s~~d~e~-v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 167 (620)
+..+.-.++++.|.+ .||+-|=+ | |+.-+.+|+.. ++...+... +-++.+++.+..+.++.-+..+
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-------~~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-------GKVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-------CCCCEEecCCCCCHHHHHHHHH
Confidence 788888999999999 99998866 3 35556666543 455555432 2346788877655555433334
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCC--CCCCCHHHHHHHHHHHHHcCC
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed--~~r~d~e~l~~~~~~~~~aGa 245 (620)
..+.+|++.+-+..|.. ++.+.+++++-..+.++. .++..+.|+... +...+++.+.+++ + -.
T Consensus 94 ~a~~~Gad~v~v~~P~y-------~~~~~~~l~~~f~~va~a---~~lPv~iYn~P~~tg~~l~~~~l~~L~----~-~p 158 (293)
T PRK04147 94 YATELGYDAISAVTPFY-------YPFSFEEICDYYREIIDS---ADNPMIVYNIPALTGVNLSLDQFNELF----T-LP 158 (293)
T ss_pred HHHHcCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHHh---CCCCEEEEeCchhhccCCCHHHHHHHh----c-CC
Confidence 44667999887766542 345666766655555443 344545665443 3345666666554 3 24
Q ss_pred cEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHH
Q 007056 246 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 325 (620)
Q Consensus 246 ~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEe 325 (620)
..+.+.|+.|- +..+.+++ +..++ .. -+-++++ +.+.++..|++.. +.| .+|.-.+.
T Consensus 159 nvvgiK~s~~d--~~~~~~~~----~~~~~---~~-v~~G~d~------~~~~~l~~G~~G~---is~----~~n~~p~~ 215 (293)
T PRK04147 159 KVIGVKQTAGD--LYQLERIR----KAFPD---KL-IYNGFDE------MFASGLLAGADGA---IGS----TYNVNGWR 215 (293)
T ss_pred CEEEEEeCCCC--HHHHHHHH----HhCCC---CE-EEEeehH------HHHHHHHcCCCEE---Eec----hhhhCHHH
Confidence 78999999873 44554443 33443 11 2334442 2446678887544 333 56777777
Q ss_pred HHHHHHh
Q 007056 326 VVMAFKC 332 (620)
Q Consensus 326 vv~~L~~ 332 (620)
++...+.
T Consensus 216 ~~~l~~~ 222 (293)
T PRK04147 216 ARQIFEA 222 (293)
T ss_pred HHHHHHH
Confidence 6665553
No 413
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=74.05 E-value=98 Score=33.77 Aligned_cols=138 Identities=25% Similarity=0.312 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCc-cceEEee----------------ccc
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGL----------------SRC 157 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l-~~~i~~~----------------~r~ 157 (620)
...+.-++=+..|.++|-+.+=+..| +.++.+.++.|.+.+... +. +|.++.. .|-
T Consensus 28 ~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~-----g~~iPlVADIHFd~~lAl~a~~~v~kiRI 100 (359)
T PF04551_consen 28 RDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRAL-----GSPIPLVADIHFDYRLALEAIEAVDKIRI 100 (359)
T ss_dssp T-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCT-----T-SS-EEEEESTTCHHHHHHHHC-SEEEE
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccC-----CCCCCeeeecCCCHHHHHHHHHHhCeEEE
Confidence 45566677788899999999999988 567888888888762110 00 1222211 122
Q ss_pred chh---------------hHHHHHHHHhcCCCC-EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc
Q 007056 158 NER---------------DIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS 221 (620)
Q Consensus 158 ~~~---------------dI~~a~eal~~ag~~-~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~ 221 (620)
|+- .++.-+++.++.+.+ ||.+-...=+-++..+++-+.+..++.+.+.++.+.++|+..+.+|
T Consensus 101 NPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviS 180 (359)
T PF04551_consen 101 NPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVIS 180 (359)
T ss_dssp -TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEE
T ss_pred CCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 222 223334444445555 5666544444566666677788888888888888888888777776
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q 007056 222 PEDAGRSDRKFLYEILGEVIK 242 (620)
Q Consensus 222 ~ed~~r~d~e~l~~~~~~~~~ 242 (620)
.- -+|.....+..+.+.+
T Consensus 181 lK---sSdv~~~i~ayr~la~ 198 (359)
T PF04551_consen 181 LK---SSDVPETIEAYRLLAE 198 (359)
T ss_dssp EE---BSSHHHHHHHHHHHHH
T ss_pred EE---eCChHHHHHHHHHHHH
Confidence 63 2455555555554443
No 414
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=73.90 E-value=39 Score=35.30 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcC-C--cEEeecCCccccCHH-----HHHHHHHHHHHhCC
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-A--TTLNIPDTVGITMPT-----EFGKLIADIKANTP 274 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aG-a--~~I~L~DTvG~~~P~-----~v~~li~~l~~~~~ 274 (620)
..++++.++..+ +.+. .+|-..-.+..+.+.+...| . .++.|.|++..-.=+ .+..-++.+|+.+|
T Consensus 103 t~~~v~~~~~~~---~~i~---~TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~ 176 (265)
T TIGR00078 103 TRKYVEAARGTN---VRIA---DTRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAP 176 (265)
T ss_pred HHHHHHHhcCCC---eEEE---ecCCCChhhhHHHHHHHHhcCCcccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCC
Confidence 445555555544 2222 24655566777777777664 3 578888765543221 24556788888887
Q ss_pred CCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHhccccccCccccCCChhhHHHHH
Q 007056 275 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS 354 (620)
Q Consensus 275 ~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~s 354 (620)
+ ..+|++=+|| +.-++.|.++|||+|-. ||...|++-...+.......--..-||+++.+.++.
T Consensus 177 ~--~~~Igvev~t-----~eea~~A~~~gaDyI~l---------d~~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a 240 (265)
T TIGR00078 177 F--ALKIEVEVES-----LEEAEEAAEAGADIIML---------DNMKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYA 240 (265)
T ss_pred C--CCeEEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 4 3567777876 36788999999999855 677777776655532110000123478888877666
Q ss_pred H
Q 007056 355 K 355 (620)
Q Consensus 355 ~ 355 (620)
+
T Consensus 241 ~ 241 (265)
T TIGR00078 241 E 241 (265)
T ss_pred H
Confidence 3
No 415
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=73.90 E-value=1.1e+02 Score=31.38 Aligned_cols=209 Identities=18% Similarity=0.192 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEE--ecCC--CChhH--HHHHHHHHHHhcccccccCCccceEEeecc-cchhhHHHHHHH
Q 007056 96 TSKEKLDIARQLAKLGVDIIEA--GFPA--ASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTAWEA 168 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEv--GfP~--~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a~ea 168 (620)
|++.-++-...|.+-|..-+=+ |+-. ..|-+ ++.++++.+..+ + .+.++.- -.+++ ++.
T Consensus 40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~--------l--~inaHvGfvdE~~----~ek 105 (275)
T COG1856 40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTG--------L--LINAHVGFVDESD----LEK 105 (275)
T ss_pred chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhC--------e--EEEEEeeeccHHH----HHH
Confidence 3433444455788889876554 3311 12221 356666666532 2 1222221 12333 355
Q ss_pred HhcCCCCEEEE-EecCCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---EEEEcCCCCCCCCHHHHHHHHHHHHHc
Q 007056 169 VKYAKRPRIHT-FIATSG-IHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DVEFSPEDAGRSDRKFLYEILGEVIKV 243 (620)
Q Consensus 169 l~~ag~~~v~i-~~~~Sd-~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~---~V~f~~ed~~r~d~e~l~~~~~~~~~a 243 (620)
+++.+++.+.+ |++-.+ +-.-+++.+|.+. ..+.++++++.|+. .|..+. +.++...|| +.++.+.+.
T Consensus 106 lk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~d----yl~~l~~L~e~~irvvpHitiGL-~~gki~~e~--kaIdiL~~~ 178 (275)
T COG1856 106 LKEELVDVVSLDFVGDNDVIKRVYKLPKSVED----YLRSLLLLKENGIRVVPHITIGL-DFGKIHGEF--KAIDILVNY 178 (275)
T ss_pred HHHhcCcEEEEeecCChHHHHHHHcCCccHHH----HHHHHHHHHHcCceeceeEEEEe-ccCcccchH--HHHHHHhcC
Confidence 66778887765 333333 3333455667554 44567888999875 234455 667776664 456666677
Q ss_pred CCcEEee---cCCcccc-------CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHH-HHHHHHHhcCcEEeeccc
Q 007056 244 GATTLNI---PDTVGIT-------MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA-NTIAGACAGARQVEVTIN 312 (620)
Q Consensus 244 Ga~~I~L---~DTvG~~-------~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvA-NslaAv~aGA~~Vd~Ti~ 312 (620)
-.|.+.| -=|.|.- +|+++.+.+++.|+.+|+ ++.+-|---+|---- =--.|+.+|++.|---..
T Consensus 179 ~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~----pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~~ 254 (275)
T COG1856 179 EPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN----PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPPR 254 (275)
T ss_pred CCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC----CeeEeecCcCchhHHHHHHHHHHcCCceeecCCc
Confidence 7776544 3566632 568888899999999985 466668888885533 335789999999999999
Q ss_pred cccCCcCcccHHHHHHH
Q 007056 313 GIGERAGNASLEEVVMA 329 (620)
Q Consensus 313 GlGERaGNa~lEevv~~ 329 (620)
|.+|=++-...++++.+
T Consensus 255 ~t~e~ak~~r~i~~~~~ 271 (275)
T COG1856 255 GTIEYAKSIRDIEIIYE 271 (275)
T ss_pred cceehhhhhhhhhhhhh
Confidence 99998887777776653
No 416
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=73.84 E-value=15 Score=38.88 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 235 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
.=++.+.++|+|.| |-....+| ..+++..+|.++ ++++-.-|-| +..++.++..||+.|-+|
T Consensus 87 ~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f----~~~fmad~~~-----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 87 VEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF----TVPFVCGARN-----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc----CCCEEccCCC-----HHHHHHHHHCCCCeeecc
Confidence 44677889999999 88888999 568999999888 2566655555 778999999999999888
No 417
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=73.77 E-value=99 Score=35.13 Aligned_cols=160 Identities=25% Similarity=0.359 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.+|..+|..|.-.+.. |||+|.++|+. +++|.+.+|++..+.+.. + .+.|+=.- +.+.|+. ++.+..+
T Consensus 172 alteKD~~dl~f~~~~-gvD~vA~SFVr-~~~Dv~~~R~~l~~~~~~---~---~~iiaKIE--~~eav~N-ldeIi~~- 239 (477)
T COG0469 172 ALTEKDKEDLKFGLEQ-GVDFVALSFVR-NAEDVEEVREILAETGGR---D---VKIIAKIE--NQEAVDN-LDEIIEA- 239 (477)
T ss_pred CCCccCHHHHHHHHhc-CCCEEEEecCC-CHHHHHHHHHHHHHhCCC---C---ceEEEeec--CHHHHhH-HHHHHHh-
Confidence 5788888888777766 99999999986 678888888555432221 0 12221111 2233332 2221111
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
.+.|. ++--|+=+ ....+++.-.-+.+++.|+..|.. |.. |.....+-....+.+++.++.+ |+|.
T Consensus 240 SDGIM--VARGDLGV----Eip~e~Vp~~QK~iI~~~~~~gkp-VItATQMLeSMi~np~PTRAEvsDVanAvlD-GtDA 311 (477)
T COG0469 240 SDGIM--VARGDLGV----EIPLEEVPIIQKRIIRKARRAGKP-VITATQMLESMIENPRPTRAEVSDVANAVLD-GTDA 311 (477)
T ss_pred cCceE--EEeccccc----ccCHHHhhHHHHHHHHHHHHcCCc-eEEeeccHHHHhhCCCCCchhhhHHHHHHHh-CCce
Confidence 13332 23223221 245677777788999999999975 433 1111122233445567777764 9999
Q ss_pred Eeec-CCccccCHHHHHHHHHHHHHhC
Q 007056 248 LNIP-DTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 248 I~L~-DTvG~~~P~~v~~li~~l~~~~ 273 (620)
+.|. -|.=...|-+.-+....+....
T Consensus 312 vMLS~ETA~G~yPveaV~~M~~I~~~a 338 (477)
T COG0469 312 VMLSGETAAGKYPVEAVATMARIAKEA 338 (477)
T ss_pred eeechhhhcCCCHHHHHHHHHHHHHHH
Confidence 9887 5777788987777777776654
No 418
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.57 E-value=13 Score=35.89 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=63.3
Q ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC----CC----CCCC------HHHH
Q 007056 168 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE----DA----GRSD------RKFL 233 (620)
Q Consensus 168 al~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e----d~----~r~d------~e~l 233 (620)
.++.+|.+.|.+.......... .-..+.+..+.++++|+.-+.+.+. .. ...+ .+++
T Consensus 3 ~~~~~G~~~vE~~~~~~~~~~~---------~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQPWDE---------KDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSHHTH---------HHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred HHHHcCCCEEEEecCCCccccc---------chHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Confidence 3455688888776442111110 0345677888899999862222111 10 1233 6889
Q ss_pred HHHHHHHHHcCCcEEeec-----CCccccCHHHHHHHHHHHHHhCC--CCCceeEEEecCCCcc
Q 007056 234 YEILGEVIKVGATTLNIP-----DTVGITMPTEFGKLIADIKANTP--GIENVVISTHCQNDLG 290 (620)
Q Consensus 234 ~~~~~~~~~aGa~~I~L~-----DTvG~~~P~~v~~li~~l~~~~~--~~~~v~i~~H~HND~G 290 (620)
.+.++.+..+|+..+.+. ...+.........+++.+++..+ ...++.|.++.|....
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~ 137 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPF 137 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcc
Confidence 999999999999988887 22233333444444444433211 0014678888887654
No 419
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=73.44 E-value=60 Score=35.58 Aligned_cols=95 Identities=9% Similarity=0.088 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHH-HHH
Q 007056 218 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 296 (620)
Q Consensus 218 V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-ANs 296 (620)
..|.+..+ -.+++.-.+.++.+.+.+.+.+.|.--......+++.++|..+...+|. +.|.- . +|.|. .+-
T Consensus 179 ~lfgiVqG-g~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~iv~~~~~~lp~--~kPry--l---~Gvg~P~~i 250 (368)
T TIGR00430 179 ALFGIVQG-GTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLPK--DKPRY--L---MGVGTPEDL 250 (368)
T ss_pred eEEEEeCC-CCCHHHHHHHHHHHHHCCCCeeEeCCccCCCCHHHHHHHHHHHHhhCCc--cccee--e---cCCCCHHHH
Confidence 46766544 3444555556788888888888776633234567789999999988875 33432 2 55554 588
Q ss_pred HHHHHhcCcEEeeccccccCCcCc
Q 007056 297 IAGACAGARQVEVTINGIGERAGN 320 (620)
Q Consensus 297 laAv~aGA~~Vd~Ti~GlGERaGN 320 (620)
+.++..|+|.+|++.-=.=.|.|.
T Consensus 251 ~~~v~~GvD~FD~~~ptr~Ar~G~ 274 (368)
T TIGR00430 251 LNAIRRGIDMFDCVMPTRNARNGT 274 (368)
T ss_pred HHHHHcCCCEEEecCcccccCCCc
Confidence 999999999999988654444443
No 420
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=73.38 E-value=1e+02 Score=30.73 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchh----------hHHHH
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER----------DIKTA 165 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~----------dI~~a 165 (620)
...+-.++++.+.+.|+..+++ .++++.+.++...+. |.+.-+.+.-.. +++.+
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~----~~~~~~~~i~~~~~i------------Pil~~~~~~~~~~~~~ig~~~~~~~~a 88 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRA----NGVEDIRAIRARVDL------------PIIGLIKRDYPDSEVYITPTIEEVDAL 88 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEc----CCHHHHHHHHHhCCC------------CEEEEEecCCCCCCceeCCCHHHHHHH
Q ss_pred HHHHhcCCCCEEEEEecC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCCHHHHHHHHHHH
Q 007056 166 WEAVKYAKRPRIHTFIAT----SGIHMEHKLRKTKQQVVEIARSMVKFARSLG-CDDVEFSPEDAGRSDRKFLYEILGEV 240 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~----Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G-~~~V~f~~ed~~r~d~e~l~~~~~~~ 240 (620)
.++ |++.|-+-.+. .+ +...+.++.++++| +. +..++ .+++.+ ..+
T Consensus 89 ~~a----Gad~I~~~~~~~~~p~~---------------~~~~~~i~~~~~~g~~~-iiv~v-----~t~~ea----~~a 139 (219)
T cd04729 89 AAA----GADIIALDATDRPRPDG---------------ETLAELIKRIHEEYNCL-LMADI-----STLEEA----LNA 139 (219)
T ss_pred HHc----CCCEEEEeCCCCCCCCC---------------cCHHHHHHHHHHHhCCe-EEEEC-----CCHHHH----HHH
Q ss_pred HHcCCcEE--eecCCcccc--CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcch-HHHHHHHHHHhcCcEE
Q 007056 241 IKVGATTL--NIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 307 (620)
Q Consensus 241 ~~aGa~~I--~L~DTvG~~--~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~Gl-AvANslaAv~aGA~~V 307 (620)
.++|++.| +..+..+.. ......+.++.+++.+ ++++-. ..|. -..|...++.+||+.|
T Consensus 140 ~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~----~ipvia----~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 140 AKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL----GIPVIA----EGRINSPEQAAKALELGADAV 203 (219)
T ss_pred HHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc----CCCEEE----eCCCCCHHHHHHHHHCCCCEE
No 421
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=73.36 E-value=1.7e+02 Score=33.30 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.+|.+++..|- .-.+.|||+|-+.|- .+++|...+|.+.+..... .. +.+-. -+.+.++.. +.+...
T Consensus 171 ~ltekD~~di~-f~~~~~vD~ia~SFV-~~~~di~~~r~~l~~~~~~-------~~-iiakI-Et~~av~nl-deI~~~- 237 (480)
T cd00288 171 ALSEKDKADLR-FGVEQGVDMIFASFV-RKASDVLEIREVLGEKGKD-------IK-IIAKI-ENQEGVNNF-DEILEA- 237 (480)
T ss_pred CCCHHHHHHHH-HHHHcCCCEEEECCC-CCHHHHHHHHHHHHhcCCC-------ce-EEEEE-CCHHHHHhH-HHHHHh-
Confidence 47778877655 556889999999885 4788888888777642111 11 11111 122333322 222222
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
.|. ++++-.|+-++. ..+++.....+.++.|+++|.. |.. |.....+-....+-+++.++. -|+|.
T Consensus 238 ~Dg--ImIargDLg~e~----g~~~v~~~qk~ii~~~~~~gkp-vi~ATqmLeSM~~~p~PTRAEvtDVanav~-dG~D~ 309 (480)
T cd00288 238 SDG--IMVARGDLGVEI----PAEEVFLAQKMLIAKCNLAGKP-VITATQMLESMIYNPRPTRAEVSDVANAVL-DGTDC 309 (480)
T ss_pred cCE--EEECcchhhhhc----ChHHHHHHHHHHHHHHHHcCCC-EEEEchhHHHHhhCCCCCchhhHHHHHHHH-hCCcE
Confidence 444 456666655542 3688888889999999999985 433 222233334455667777665 49999
Q ss_pred Eeec-CCccccCHHHHHHHHHHHHHhC
Q 007056 248 LNIP-DTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 248 I~L~-DTvG~~~P~~v~~li~~l~~~~ 273 (620)
+-|. -|.=.-.|-+.-+.+..+.+..
T Consensus 310 vmLS~ETa~G~yPveaV~~m~~I~~~a 336 (480)
T cd00288 310 VMLSGETAKGKYPVEAVKAMARICLEA 336 (480)
T ss_pred EEEechhcCCCCHHHHHHHHHHHHHHH
Confidence 9995 5666678888887777777654
No 422
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=73.25 E-value=1.1e+02 Score=31.04 Aligned_cols=191 Identities=15% Similarity=0.196 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEE----e-c-CCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 96 TSKEKLDIARQLAKLGVDIIEA----G-F-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEv----G-f-P~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
+...-.+-++.|.+.|+|++=+ | | |..+- -.++++.|++..++. + +-..-. ..+.+..++.+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~-G~~~v~~lr~~~~~~--------~-lDvHLm--~~~p~~~i~~~ 84 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSF-GPPVVKSLRKHLPNT--------F-LDCHLM--VSNPEKWVDDF 84 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCc-CHHHHHHHHhcCCCC--------C-EEEEEC--CCCHHHHHHHH
Confidence 3334456677778889887654 3 3 43222 246777777642111 1 111111 22344455666
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~-~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
..+|++.|.+-.-+.+ .++.++++.++++|+. -|.++| .++.+.+.++++. ..+|.|
T Consensus 85 ~~~Gad~itvH~ea~~---------------~~~~~~l~~ik~~G~~~gval~p----~t~~e~l~~~l~~---~~vD~V 142 (228)
T PTZ00170 85 AKAGASQFTFHIEATE---------------DDPKAVARKIREAGMKVGVAIKP----KTPVEVLFPLIDT---DLVDMV 142 (228)
T ss_pred HHcCCCEEEEeccCCc---------------hHHHHHHHHHHHCCCeEEEEECC----CCCHHHHHHHHcc---chhhhH
Confidence 6679998876433221 2255778888889875 245565 3566666555410 011111
Q ss_pred ----eecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHH
Q 007056 249 ----NIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 324 (620)
Q Consensus 249 ----~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lE 324 (620)
.=+..-|...-.+..+.++.+++.++. +.|.+ |-|.-..|.-.++++||+.+ |.|=+ =.++.+.+
T Consensus 143 l~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~---~~I~V----dGGI~~~ti~~~~~aGad~i---VvGsa-I~~a~d~~ 211 (228)
T PTZ00170 143 LVMTVEPGFGGQSFMHDMMPKVRELRKRYPH---LNIQV----DGGINLETIDIAADAGANVI---VAGSS-IFKAKDRK 211 (228)
T ss_pred HhhhcccCCCCcEecHHHHHHHHHHHHhccc---CeEEE----CCCCCHHHHHHHHHcCCCEE---EEchH-HhCCCCHH
Confidence 012233444433455566777776653 33433 67888889999999999987 33311 12334455
Q ss_pred HHHHHHH
Q 007056 325 EVVMAFK 331 (620)
Q Consensus 325 evv~~L~ 331 (620)
+.+..++
T Consensus 212 ~~~~~i~ 218 (228)
T PTZ00170 212 QAIELLR 218 (228)
T ss_pred HHHHHHH
Confidence 5555444
No 423
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=72.96 E-value=99 Score=35.22 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=57.4
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHc
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 243 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~a 243 (620)
.++.++.+|+.+|++-+=+.+-.....+|+. ...+.+.++++.+++.|+..|..+...+ -..+.+.+.+.++.+.+.
T Consensus 271 ~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L 348 (488)
T PRK08207 271 KLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKL 348 (488)
T ss_pred HHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 4677888899999987666555555666663 3356677889999999985343322211 134567777888888888
Q ss_pred CCcEEeec
Q 007056 244 GATTLNIP 251 (620)
Q Consensus 244 Ga~~I~L~ 251 (620)
+++.+.+-
T Consensus 349 ~pd~isv~ 356 (488)
T PRK08207 349 NPESLTVH 356 (488)
T ss_pred CcCEEEEE
Confidence 88777644
No 424
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=72.94 E-value=14 Score=39.39 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCcccc---CHHHHHHHH----HHHHHhCCCCCceeEEEecCCCcchHHHHHHHHH-Hh
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGIT---MPTEFGKLI----ADIKANTPGIENVVISTHCQNDLGLSTANTIAGA-CA 302 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~~---~P~~v~~li----~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv-~a 302 (620)
+.+.+++++..++||+.|.++|+.+.. .|+++.+++ +.+.+.+.. .++.+|.+.+. .+.+..+ +.
T Consensus 171 ~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~---~~~ilh~cG~~----~~~l~~~~~~ 243 (326)
T cd03307 171 EACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG---CPTILHICGNT----TPILEYIAQC 243 (326)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc---CCcEEEECCCC----hhHHHHHHHc
Confidence 345566777778999999999998643 899988776 333333432 34677855443 2334433 45
Q ss_pred cCcEEeeccccccCCcCcccHHHHHHHH
Q 007056 303 GARQVEVTINGIGERAGNASLEEVVMAF 330 (620)
Q Consensus 303 GA~~Vd~Ti~GlGERaGNa~lEevv~~L 330 (620)
|++.+. +..+ .++++....+
T Consensus 244 g~d~~~-----~d~~---~dl~e~~~~~ 263 (326)
T cd03307 244 GFDGIS-----VDEK---VDVKTAKEIV 263 (326)
T ss_pred CCCeec-----cccc---CCHHHHHHHc
Confidence 887653 2222 3777665433
No 425
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=72.90 E-value=33 Score=37.29 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCc-EEeecCC-ccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT-TLNIPDT-VGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~-~I~L~DT-vG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.++-.-.|++ .+.+.+..+++++.+.++. +|.+... ..++-...+..++..+.++.+ .+|
T Consensus 6 ~k~lL~~A~~~~yAVgAfN~-----~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~---~VP 77 (347)
T PRK09196 6 LRQLLDHAAEHGYGVPAFNV-----NNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP---HIP 77 (347)
T ss_pred HHHHHHHHHHcCceEEEeee-----CCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC---CCc
Confidence 45778889999875346666 6789999999999999865 4555443 334445567788888877664 267
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeeccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTIN 312 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~ 312 (620)
+.+|. |-|.-......|+++|.+- +|+|-.
T Consensus 78 ValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l 109 (347)
T PRK09196 78 VVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLK 109 (347)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 77654 6666788899999999986 698876
No 426
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=72.90 E-value=53 Score=35.98 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecC-CccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHH-HH
Q 007056 218 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-AN 295 (620)
Q Consensus 218 V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~D-TvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAv-AN 295 (620)
..|.+.-++ .+++.-.+.++.+.+.+.+.+.|.- .+| -.++++.+++..++..+|. +.|. |. +|.|. .+
T Consensus 178 ~lfgiVqGg-~~~dLR~~sa~~l~~~~~~GyaIGGl~~g-e~~~~~~~~l~~~~~~lP~--~kPr--yl---~Gvg~P~~ 248 (367)
T TIGR00449 178 ALFGIVQGG-TYPDLRRQSAEGLAELDFDGYAIGGVSVG-EPKRDMLRILEHVAPLLPK--DKPR--YL---MGVGTPEL 248 (367)
T ss_pred eEEEEecCC-CCHHHHHHHHHHHhhCCCCeEEEeCcccC-CCHHHHHHHHHHHHhhCCc--ccce--Ee---cCCCCHHH
Confidence 456665443 3334333457788888888877766 333 3458899999999998885 3443 33 55554 68
Q ss_pred HHHHHHhcCcEEeeccccccCCcC
Q 007056 296 TIAGACAGARQVEVTINGIGERAG 319 (620)
Q Consensus 296 slaAv~aGA~~Vd~Ti~GlGERaG 319 (620)
.+.++..|+|.+|++.-=.=.|.|
T Consensus 249 i~~~v~~GvD~FD~~~ptr~Ar~G 272 (367)
T TIGR00449 249 LANAVSLGIDMFDCVAPTRYARNG 272 (367)
T ss_pred HHHHHHcCCCEEeeCCccccccCC
Confidence 899999999999998864444444
No 427
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=72.89 E-value=19 Score=37.99 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccccc
Q 007056 235 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 314 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~Gl 314 (620)
.=++.+.++|+|.| |-....+| ..+++..+|.++ + +++-.-|-| +..++.++..||+.|-+|..|
T Consensus 80 ~Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~---vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~- 144 (287)
T TIGR00343 80 VEAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-K---VPFVCGARD-----LGEALRRINEGAAMIRTKGEA- 144 (287)
T ss_pred HHHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-C---CCEEccCCC-----HHHHHHHHHCCCCEEeccccC-
Confidence 44677888999999 88889999 588888888887 2 566655555 778899999999999999885
Q ss_pred cCCcCc
Q 007056 315 GERAGN 320 (620)
Q Consensus 315 GERaGN 320 (620)
.+||
T Consensus 145 --gTg~ 148 (287)
T TIGR00343 145 --GTGN 148 (287)
T ss_pred --CCcc
Confidence 3555
No 428
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=72.81 E-value=4.7 Score=41.55 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=79.6
Q ss_pred HHhHcC--CCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEe-ec--cc-chhhHHHHHHHHhcCCCCEEEE
Q 007056 106 QLAKLG--VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-LS--RC-NERDIKTAWEAVKYAKRPRIHT 179 (620)
Q Consensus 106 ~L~~~G--vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~-~~--r~-~~~dI~~a~eal~~ag~~~v~i 179 (620)
.|.-+| ||.+=.||-.+.-.+.+.+++..+..... +. ....| +. -+ ...-++.-++..+..|.+.|.+
T Consensus 30 lLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~-----gV-~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 30 LLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSH-----GV-YVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCT-----T--EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHc-----CC-eEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 344445 89999998544333335555544432110 11 11111 00 00 1334566677778889999999
Q ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCC---CCCCCCHHHHHHHHHHHHHcCCcEE-------
Q 007056 180 FIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPE---DAGRSDRKFLYEILGEVIKVGATTL------- 248 (620)
Q Consensus 180 ~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~e---d~~r~d~e~l~~~~~~~~~aGa~~I------- 248 (620)
...+-++ +. +.-.++|+.+++.|+.. .+++.- .....+++.+.+.++.-.++||+.|
T Consensus 104 SdGti~l--------~~----~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEs 171 (244)
T PF02679_consen 104 SDGTIDL--------PE----EERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARES 171 (244)
T ss_dssp --SSS-----------H----HHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT
T ss_pred cCCceeC--------CH----HHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeecc
Confidence 7766442 22 23446789999999851 245432 3444567888999999999999866
Q ss_pred ---eecCCccccCHHHHHHHHHH
Q 007056 249 ---NIPDTVGITMPTEFGKLIAD 268 (620)
Q Consensus 249 ---~L~DTvG~~~P~~v~~li~~ 268 (620)
.|+|..|-...+.+.+++..
T Consensus 172 G~~Gi~~~~g~~r~d~v~~i~~~ 194 (244)
T PF02679_consen 172 GKGGIYDNDGEVRTDLVEKIIER 194 (244)
T ss_dssp --STTB-TTS-B-HHHHHHHHTT
T ss_pred CCCCccCCCCCccHHHHHHHHHh
Confidence 56888898888877777664
No 429
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=72.81 E-value=34 Score=36.24 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE-EeecC-CccccC-HHHHHHHHHHHHHhCCCCCce
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPD-TVGITM-PTEFGKLIADIKANTPGIENV 279 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~-I~L~D-TvG~~~-P~~v~~li~~l~~~~~~~~~v 279 (620)
..++++.|++.++-.-.|+. .+.+.+..+++++.+..... |.+.. +..++- ...+..++..+.+...- ++
T Consensus 6 ~~~~l~~A~~~~yav~AfN~-----~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~--~v 78 (293)
T PRK07315 6 AEKFVQAARDNGYAVGGFNT-----NNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGI--TV 78 (293)
T ss_pred HHHHHHHHHHCCceEEEEEE-----CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC--CC
Confidence 45778889998875346665 58899999999999998654 44433 334434 46678888888776521 26
Q ss_pred eEEEecCCCcchHHHHHHHHHHhcCcEEe
Q 007056 280 VISTHCQNDLGLSTANTIAGACAGARQVE 308 (620)
Q Consensus 280 ~i~~H~HND~GlAvANslaAv~aGA~~Vd 308 (620)
|+.+|. |-| .+.....|+++|++.|.
T Consensus 79 PV~lHL--DH~-~~~~i~~ai~~GftSVm 104 (293)
T PRK07315 79 PVAIHL--DHG-HYEDALECIEVGYTSIM 104 (293)
T ss_pred cEEEEC--CCC-CHHHHHHHHHcCCCEEE
Confidence 788765 445 57788999999998863
No 430
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=72.79 E-value=32 Score=35.99 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHHHHHHhCCCCCceeEEEec-CCCcchHHHH
Q 007056 220 FSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTAN 295 (620)
Q Consensus 220 f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~~l~~~~~~~~~v~i~~H~-HND~GlAvAN 295 (620)
..|-+.+..|.+-+.+.++.+++.|++-|.++-|+| .++.+|-.++++.+.+...+ +-+|. +++.--++.-
T Consensus 9 ~TPf~~g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~-----vi~gvg~~~~~~ai~~ 83 (279)
T cd00953 9 ITPFTGNKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK-----VIFQVGSLNLEESIEL 83 (279)
T ss_pred ecCcCCCCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC-----EEEEeCcCCHHHHHHH
Q ss_pred HHHHHHhcCcEE
Q 007056 296 TIAGACAGARQV 307 (620)
Q Consensus 296 slaAv~aGA~~V 307 (620)
+..|.++||+.|
T Consensus 84 a~~a~~~Gad~v 95 (279)
T cd00953 84 ARAAKSFGIYAI 95 (279)
T ss_pred HHHHHHcCCCEE
No 431
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=72.49 E-value=33 Score=36.07 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=73.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE-Eeec-CCccccCHHHHHHHHHHHHHhCCCCCceeE
Q 007056 204 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIP-DTVGITMPTEFGKLIADIKANTPGIENVVI 281 (620)
Q Consensus 204 ~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~-I~L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~i 281 (620)
.++++.|++.|+-.-.|+. .+.+.+..+++++.+.+... |.+. .+..++-.+.+..++..+.+.. ++|+
T Consensus 2 k~lL~~A~~~~yaV~AfN~-----~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~----~VPV 72 (276)
T cd00947 2 KELLKKAREGGYAVGAFNI-----NNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA----SVPV 72 (276)
T ss_pred HHHHHHHHHCCceEEEEee-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC----CCCE
Confidence 3677888998875446665 57799999999999998654 4443 3444455677888888887776 3778
Q ss_pred EEecCCCcchHHHHHHHHHHhcCcE--Eeecccccc
Q 007056 282 STHCQNDLGLSTANTIAGACAGARQ--VEVTINGIG 315 (620)
Q Consensus 282 ~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~GlG 315 (620)
.+|. |-|.-......|+++|.+- +|+|-..+-
T Consensus 73 ~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~e 106 (276)
T cd00947 73 ALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFE 106 (276)
T ss_pred EEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 8665 5666678889999999876 588776543
No 432
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=72.40 E-value=35 Score=37.11 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eecC-CccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIPD-TVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~D-TvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|++ .+.+.+..+++++.+.+...| .+.- +..++-...+..++..+.+..+ .+|
T Consensus 4 ~k~iL~~A~~~~yAV~AfN~-----~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~---~VP 75 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPAFNV-----NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYP---HIP 75 (347)
T ss_pred HHHHHHHHHHcCceEEEEee-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCC---CCc
Confidence 45678889999885346766 678999999999999987644 3332 2334444667888888887764 267
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeeccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTIN 312 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~ 312 (620)
+.+| =|-|.-......|+++|.+- +|+|-.
T Consensus 76 ValH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l 107 (347)
T TIGR01521 76 VVMH--QDHGNSPATCQRAIQLGFTSVMMDGSLR 107 (347)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCEEeecCcCC
Confidence 7755 57777889999999999986 588864
No 433
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=72.39 E-value=14 Score=41.57 Aligned_cols=72 Identities=24% Similarity=0.194 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeec
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 310 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~T 310 (620)
++..+-++++.++|++.|.+--+-|. . ..+.+.|+++++.+|+ ++|.+ -..+-...+..++++||+.|.++
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~-~-~~~~~~i~~i~~~~~~---~~vi~----G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH-S-IYVIDSIKEIKKTYPD---LDIIA----GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc-H-hHHHHHHHHHHHhCCC---CCEEE----EeCCCHHHHHHHHHhCCCEEEEC
Confidence 34556677889999999888444552 2 4688899999999874 55555 23444567889999999999986
Q ss_pred c
Q 007056 311 I 311 (620)
Q Consensus 311 i 311 (620)
+
T Consensus 294 ~ 294 (450)
T TIGR01302 294 I 294 (450)
T ss_pred C
Confidence 5
No 434
>PRK06354 pyruvate kinase; Provisional
Probab=72.24 E-value=2e+02 Score=33.63 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcC
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 172 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~a 172 (620)
..||.+++..| +.-.+.|||+|-+.|-. +++|...++.+.+...+. . ..+.+-. -+.+.++.. +.+...
T Consensus 174 p~ltekD~~di-~f~~~~~vD~ia~SFVr-~~~dv~~~r~~l~~~~~~------~-~~iiaKI-Et~eav~nl-deI~~~ 242 (590)
T PRK06354 174 PAITEKDREDL-IFGLEQGVDWIALSFVR-NPSDVLEIRELIEEHNGK------H-IPIIAKI-EKQEAIDNI-DAILEL 242 (590)
T ss_pred CCCCHHHHHHH-HHHHHcCCCEEEEcCCC-CHHHHHHHHHHHHHhcCC------C-ceEEEEE-CCHHHHHhH-HHHHHh
Confidence 35788888886 57779999999998864 677777676665321111 1 1121111 123333322 222221
Q ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCCCCCCHHHHHHHHHHHHHcCCc
Q 007056 173 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGAT 246 (620)
Q Consensus 173 g~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~~r~d~e~l~~~~~~~~~aGa~ 246 (620)
.|. ++++-.|+=++ +..+++.....+.++.|+++|.. |.. |...-.+-....+-+++.++. -|+|
T Consensus 243 -~Dg--ImVaRGDLgve----~g~e~v~~~qk~ii~~~~~~gkp-vI~ATqmLeSM~~~p~PTRAEvsDVaNav~-DG~D 313 (590)
T PRK06354 243 -CDG--LMVARGDLGVE----IPAEEVPLLQKRLIKKANRLGKP-VITATQMLDSMQRNPRPTRAEASDVANAIL-DGTD 313 (590)
T ss_pred -cCE--EEEccchhhcc----cCcHHHHHHHHHHHHHHHHcCCC-EEEEchhHHHHhhCCCCCchhhHHHHHHhh-hCCc
Confidence 444 45566665443 33678888889999999999986 433 222222334455667777766 4999
Q ss_pred EEeec-CCccccCHHHHHHHHHHHHHh
Q 007056 247 TLNIP-DTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 247 ~I~L~-DTvG~~~P~~v~~li~~l~~~ 272 (620)
.+-|. -|.=...|.+.-+.+..+.+.
T Consensus 314 avMLS~ETA~G~yPveaV~~m~~I~~~ 340 (590)
T PRK06354 314 AVMLSNETAAGDYPVEAVQTMATIAVR 340 (590)
T ss_pred EEEecccccCCCCHHHHHHHHHHHHHH
Confidence 99998 566667888877777777654
No 435
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=72.19 E-value=74 Score=32.78 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=74.0
Q ss_pred HHHHHhHcCCCEEEEec---------CCCCh----hHHHHHHHHHHHhcccccccCCccceEE----eecccchhhHHHH
Q 007056 103 IARQLAKLGVDIIEAGF---------PAASK----EDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 165 (620)
Q Consensus 103 Ia~~L~~~Gvd~IEvGf---------P~~s~----~d~e~v~~i~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 165 (620)
-++.++++|+|.|=+|. |.... +....++.+++...+ .|.++ ++.. ..+++-+.
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~--------~pviaD~~~G~g~-~~~~~~~~ 94 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPL--------ALIVADLPFGAYG-APTAAFEL 94 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC--------CCEEEeCCCCCCc-CHHHHHHH
Confidence 47788899999998873 33211 123455666553321 12333 2333 32444444
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC--------------CC--CC
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA--------------GR--SD 229 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~--------------~r--~d 229 (620)
.+.+..+|+..|++-... + ..+.++.+++.++. |.- --|. ++ .+
T Consensus 95 ~~~l~~aGa~gv~iED~~--------------~----~~~~i~ai~~a~i~-Via-Rtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE--------------W----HIETLQMLTAAAVP-VIA-HTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHHcCCcEEEEcCcH--------------H----HHHHHHHHHHcCCe-EEE-EeCCchhhhhccCCceeeccCHHH
Confidence 444555899999986531 2 22345666666653 321 1122 12 23
Q ss_pred HHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHH
Q 007056 230 RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIA 267 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~ 267 (620)
.+.+++-+++..++||+.|.+. +. .++++.++.+
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e---~~-~~e~~~~i~~ 188 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVME---CV-PVELAKQITE 188 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc---CC-CHHHHHHHHH
Confidence 4567777888889999999997 33 5554544444
No 436
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=72.11 E-value=30 Score=35.61 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=87.7
Q ss_pred HHHhHcC--CCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEe--ec-cc-chhhHHHHHHHHhcCCCCEEE
Q 007056 105 RQLAKLG--VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG--LS-RC-NERDIKTAWEAVKYAKRPRIH 178 (620)
Q Consensus 105 ~~L~~~G--vd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~--~~-r~-~~~dI~~a~eal~~ag~~~v~ 178 (620)
..|.-+| ||.+=.||-.++-.+.+.+++..+..... +. ....| |. .+ ...-++.-++..+..|.+.|.
T Consensus 16 d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~-----~V-~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 16 DYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDY-----GI-KVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHc-----CC-eEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 3344444 78888888554433334565554422100 00 11111 00 00 112344445566677999998
Q ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEc---CCCCCCCCHHHHHHHHHHHHHcCCcE-------
Q 007056 179 TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFS---PEDAGRSDRKFLYEILGEVIKVGATT------- 247 (620)
Q Consensus 179 i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~---~ed~~r~d~e~l~~~~~~~~~aGa~~------- 247 (620)
+...+-+ ++.+ .-.+.|+.+++.|+.. .+++ ++.....+++...+.++...++||+.
T Consensus 90 iS~G~~~--------i~~~----~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarE 157 (237)
T TIGR03849 90 ISDGSME--------ISLE----ERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRE 157 (237)
T ss_pred EcCCccC--------CCHH----HHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehh
Confidence 8765433 3333 3456889999998751 2332 22233567888889999999999974
Q ss_pred ----EeecCCccccCHHHHHHHHHHHHHhCCCCCceeEE
Q 007056 248 ----LNIPDTVGITMPTEFGKLIADIKANTPGIENVVIS 282 (620)
Q Consensus 248 ----I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~ 282 (620)
+.|+|..|-.....+.++++ ++| .+++.++
T Consensus 158 sg~~~Gi~~~~g~~r~d~v~~i~~----~l~-~eklifE 191 (237)
T TIGR03849 158 SGKNIGLFDEKGNVKEDELDVLAE----NVD-INKVIFE 191 (237)
T ss_pred cCCCcceeCCCCCCchHHHHHHHh----hCC-hhcEEEE
Confidence 46677777777776666666 354 3345554
No 437
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=72.03 E-value=1.6e+02 Score=32.23 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCCh-------hH-------------HHHHHHHHHHhcccccccCCccceEEe
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-------ED-------------FEAVRTIAKEVGNAVDAESGYVPVICG 153 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~-------~d-------------~e~v~~i~~~~~~~~~~~~~l~~~i~~ 153 (620)
.++.+.-..+++.-.++..+.|=-.+|.... .+ ...++.+++.. -+|...=
T Consensus 28 v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~---------~VPValH 98 (350)
T PRK09197 28 VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY---------GVPVILH 98 (350)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC---------CCCEEEE
Confidence 5788999999999999999987655553211 11 13344454432 1344433
Q ss_pred ecccc---hhhHHHHHHHH-------hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE---
Q 007056 154 LSRCN---ERDIKTAWEAV-------KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--- 220 (620)
Q Consensus 154 ~~r~~---~~dI~~a~eal-------~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f--- 220 (620)
|-.+. .+.|++++++. ..+|...|. +... ..+.||+++..++.|++|+..|+. |+-
T Consensus 99 LDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVM-iDgS---------~lpfEeNI~~TkevVe~Ah~~Gvs-VEaELG 167 (350)
T PRK09197 99 TDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHM-IDLS---------EEPLEENIEICSKYLERMAKAGMT-LEIELG 167 (350)
T ss_pred CCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEE-eeCC---------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEe
Confidence 33332 34566665541 112466663 3332 257899999999999999999974 432
Q ss_pred ---cCCCC----------CCCCHHHHHHHHHHHHHcCC----cEE--eecCCccccC---HHHHHHHHHHHHHhCCC---
Q 007056 221 ---SPEDA----------GRSDRKFLYEILGEVIKVGA----TTL--NIPDTVGITM---PTEFGKLIADIKANTPG--- 275 (620)
Q Consensus 221 ---~~ed~----------~r~d~e~l~~~~~~~~~aGa----~~I--~L~DTvG~~~---P~~v~~li~~l~~~~~~--- 275 (620)
+.||. ..|+|+...+++++ -|+ |.+ .+--.=|.-. |.-=.++++.+++.+++
T Consensus 168 ~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~---Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~ 244 (350)
T PRK09197 168 VTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEA---LGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFG 244 (350)
T ss_pred ccCCCcCCccccccccccccCCHHHHHHHHHH---hCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhC
Confidence 22322 25889988877764 454 543 3334444432 44445567777666510
Q ss_pred --CCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 276 --IENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 276 --~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
..++||.+|+= .|+.--.-..|++.|+.-|
T Consensus 245 ~~~~~vPLVLHGg--SGipde~i~~ai~~GI~KI 276 (350)
T PRK09197 245 LPAKPFDFVFHGG--SGSTLEEIREAVSYGVVKM 276 (350)
T ss_pred CCCCCCCEEEeCC--CCCCHHHHHHHHHCCCeeE
Confidence 01378888764 4666677777788877665
No 438
>PRK01060 endonuclease IV; Provisional
Probab=71.96 E-value=53 Score=33.77 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE--EE-EcCCC---CCC-----
Q 007056 159 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD--VE-FSPED---AGR----- 227 (620)
Q Consensus 159 ~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~--V~-f~~ed---~~r----- 227 (620)
..|++.+++.+++.|.+.|.++...+.... .-..+.++ +.+.-+.+++.|+.. +. -.|.. ++.
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~--~~~~~~~~----~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r 84 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNPQQWK--RKPLEELN----IEAFKAACEKYGISPEDILVHAPYLINLGNPNKEIL 84 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCCCCc--CCCCCHHH----HHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHH
Confidence 456888888888899999999875432111 11223333 333445566777751 11 12211 111
Q ss_pred -CCHHHHHHHHHHHHHcCCcEEeecCCcccc---CHH--HHHHHHHHHHHhCCCCCceeEEEecCCCc
Q 007056 228 -SDRKFLYEILGEVIKVGATTLNIPDTVGIT---MPT--EFGKLIADIKANTPGIENVVISTHCQNDL 289 (620)
Q Consensus 228 -~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~---~P~--~v~~li~~l~~~~~~~~~v~i~~H~HND~ 289 (620)
...+++.+.++.+.+.|+..|.+- .|.. .|. .+..+++.+++-.....++.|.++.|...
T Consensus 85 ~~s~~~~~~~i~~A~~lga~~vv~h--~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~ 150 (281)
T PRK01060 85 EKSRDFLIQEIERCAALGAKLLVFH--PGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQ 150 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEc--CCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 124678888889999999988773 3321 222 33444444443221112467777776543
No 439
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=71.94 E-value=33 Score=36.35 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eecC-Cccc-cCHHHHHHHHHHHHHhCCCCCc
Q 007056 202 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIPD-TVGI-TMPTEFGKLIADIKANTPGIEN 278 (620)
Q Consensus 202 ~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~D-TvG~-~~P~~v~~li~~l~~~~~~~~~ 278 (620)
...++++.|++.|+-.-.|++ .+.+.+..+++++.+.++..| .+.. +..+ .-++.+..++..+.++.+- +
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~--~ 77 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPAFNI-----NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPY--G 77 (288)
T ss_pred cHHHHHHHHHHCCceEEEEEE-----CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccC--C
Confidence 356788899999885346666 578999999999999987644 3332 2333 3467778888777776521 3
Q ss_pred eeEEEecCCCcchHHHHHHHHHHhcCcE--Eeecccccc
Q 007056 279 VVISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIG 315 (620)
Q Consensus 279 v~i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~GlG 315 (620)
+|+.+| =|-|.-......|+++|.+- +|+|-..+-
T Consensus 78 VPV~lH--LDHg~~~e~i~~ai~~GftSVMiDgS~lp~e 114 (288)
T TIGR00167 78 VPVALH--LDHGASEEDCAQAVKAGFSSVMIDGSHEPFE 114 (288)
T ss_pred CcEEEE--CCCCCCHHHHHHHHHcCCCEEEecCCCCCHH
Confidence 677755 46777788999999999986 588876553
No 440
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=71.85 E-value=41 Score=33.92 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHH-HHhcCC
Q 007056 95 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE-AVKYAK 173 (620)
Q Consensus 95 fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e-al~~ag 173 (620)
.+.++-+++++.|.. .++.+|+|+|-....-.+.++.|.+..++. +.++-+ ...|+..... ++..+|
T Consensus 13 ~~~~~a~~l~~~l~~-~v~~~kvG~~l~~~~G~~~i~~lk~~~~~~--------~v~~DL---K~~Di~~~v~~~~~~~G 80 (216)
T PRK13306 13 QDLESAIEDAKKVAE-EVDIIEVGTILLLAEGMKAVRVLRALYPDK--------IIVADT---KIADAGKILAKMAFEAG 80 (216)
T ss_pred CCHHHHHHHHHHccc-cCCEEEEChHHHHHhCHHHHHHHHHHCCCC--------EEEEEE---eecCCcHHHHHHHHHCC
Confidence 567888999999987 479999999854333346787777753221 223332 2234444322 344568
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC 215 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~ 215 (620)
++.+.+-.... .+++.++++.+++.|.
T Consensus 81 ad~vTvH~~a~---------------~~~i~~~~~~~~~~g~ 107 (216)
T PRK13306 81 ADWVTVICAAH---------------IPTIKAALKVAKEFNG 107 (216)
T ss_pred CCEEEEeCCCC---------------HHHHHHHHHHHHHcCC
Confidence 88766654332 2345566666666674
No 441
>PLN02461 Probable pyruvate kinase
Probab=71.79 E-value=1.9e+02 Score=33.19 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.+|..+|..|.+.-.+.|||+|-+.|-. +++|...+|.+....+.. ..+.++| -+++.++.--+-+..
T Consensus 190 ~ltekD~~di~~f~~~~~vD~ia~SFVr-~a~DV~~~r~~l~~~~~~----~~IiAKI-----E~~~av~nl~eIi~~-- 257 (511)
T PLN02461 190 TLTEKDKEDILQWGVPNKIDFIALSFVR-KGSDLVEVRKVLGEHAKS----ILLISKV-----ENQEGLDNFDDILAE-- 257 (511)
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEECCCC-CHHHHHHHHHHHHhCCCC----CCEEEEE-----CCHHHHHHHHHHHHh--
Confidence 4888899888777779999999998864 778888888877642211 0122232 123333322122221
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
.|.|. ++=-|+=+ -...+++-..-++.++.|++.|.. |.. |...-.+-+...+-+++.++. -|+|.
T Consensus 258 sDgIM--VARGDLGv----Eip~e~vp~~Qk~II~~c~~~gkP-VIvATQmLeSMi~np~PTRAEvsDVanAV~-dG~D~ 329 (511)
T PLN02461 258 SDAFM--VARGDLGM----EIPIEKIFLAQKMMIYKCNLAGKP-VVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDC 329 (511)
T ss_pred cCEEE--Eecccccc----ccCHHHhHHHHHHHHHHHHHcCCC-eEEeehhHHHHhhCCCCchHHHHHHHHHHH-hCCcE
Confidence 33332 33333222 135677777778999999999986 443 222333445566777777765 49999
Q ss_pred Eeec-CCccccCHHHHHHHHHHHHHhC
Q 007056 248 LNIP-DTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 248 I~L~-DTvG~~~P~~v~~li~~l~~~~ 273 (620)
+-|. -|.=...|.+.-+.+..+....
T Consensus 330 vMLS~ETA~G~yPveaV~~m~~I~~~a 356 (511)
T PLN02461 330 VMLSGETAAGAYPELAVKTMARICREA 356 (511)
T ss_pred EEEechhcCCCCHHHHHHHHHHHHHHH
Confidence 9997 4666678988877777776654
No 442
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=71.77 E-value=1.1e+02 Score=30.52 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=77.3
Q ss_pred HHHHHHHHHhHcCCCEEEEe----cCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 99 EKLDIARQLAKLGVDIIEAG----FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 99 ~Kl~Ia~~L~~~Gvd~IEvG----fP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
+=+++++.+.+.|++.+=+= .....+.+++.++.+++... .|...+-+-...+|++.++++ |+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~---------~pi~~ggGI~~~ed~~~~~~~----Ga 95 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETG---------VPVQVGGGIRSLEDVEKLLDL----GV 95 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcC---------CCEEEeCCcCCHHHHHHHHHc----CC
Confidence 56778999999999877552 22223345788888887531 133443333456777776664 88
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc--CC------CCCCC-CHHHHHHHHHHHHHcCC
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS--PE------DAGRS-DRKFLYEILGEVIKVGA 245 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~--~e------d~~r~-d~e~l~~~~~~~~~aGa 245 (620)
+.|-+ .+.- + +..+. ..+.++..|.+.+.++ .- ...+. ......++++.+.+.|+
T Consensus 96 ~~vvl--gs~~-l----------~d~~~---~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~ 159 (230)
T TIGR00007 96 DRVII--GTAA-V----------ENPDL---VKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGL 159 (230)
T ss_pred CEEEE--ChHH-h----------hCHHH---HHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCC
Confidence 87632 2211 1 11222 3344455553322221 10 11111 11234567888889999
Q ss_pred cEEeecCC--ccccCHHHHHHHHHHHHHhC
Q 007056 246 TTLNIPDT--VGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 246 ~~I~L~DT--vG~~~P~~v~~li~~l~~~~ 273 (620)
+.+.+-|- .|...... .++++.+++..
T Consensus 160 ~~ii~~~~~~~g~~~g~~-~~~i~~i~~~~ 188 (230)
T TIGR00007 160 EGIIYTDISRDGTLSGPN-FELTKELVKAV 188 (230)
T ss_pred CEEEEEeecCCCCcCCCC-HHHHHHHHHhC
Confidence 97766543 34333322 45666676654
No 443
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=71.71 E-value=1.3e+02 Score=31.28 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhHcCCCEEEEec-CCCChhH--HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCCC
Q 007056 98 KEKLDIARQLAKLGVDIIEAGF-PAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 174 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvGf-P~~s~~d--~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag~ 174 (620)
+.-++-++.|.++|+|.|-+.+ |..+..+ .+..+.|.+..+-. -++-+++-.+ ++..++..+..+...|+
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~------~i~Hlt~r~~-n~~~l~~~L~~~~~~Gi 87 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIP------TVPHLTCIGA-TREEIREILREYRELGI 87 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCC------eeEEeeecCC-CHHHHHHHHHHHHHCCC
Confidence 4556778889999999999987 4433322 34445555432211 1234444433 45567777777777899
Q ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-E--EEEcCC-CCCCCCHHHHHHHHHHHHHcCCcEEee
Q 007056 175 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-D--VEFSPE-DAGRSDRKFLYEILGEVIKVGATTLNI 250 (620)
Q Consensus 175 ~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~-~--V~f~~e-d~~r~d~e~l~~~~~~~~~aGa~~I~L 250 (620)
..|-....-.+... .-......+.+.++++++++..-. . +...|| .....+.+.-.+.++.=.++||+.+.
T Consensus 88 ~nvL~l~GD~~~~~----~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~i- 162 (272)
T TIGR00676 88 RHILALRGDPPKGE----GTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAI- 162 (272)
T ss_pred CEEEEeCCCCCCCC----CCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEe-
Confidence 88765543322110 001112234567777888876222 1 344565 12223444444555555679998554
Q ss_pred cCCccccCHHHHHHHHHHHHHh
Q 007056 251 PDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 251 ~DTvG~~~P~~v~~li~~l~~~ 272 (620)
|==+..++.+.++++.+++.
T Consensus 163 --TQ~~fd~~~~~~~~~~~~~~ 182 (272)
T TIGR00676 163 --TQLFFDNDDYYRFVDRCRAA 182 (272)
T ss_pred --eccccCHHHHHHHHHHHHHc
Confidence 55566788888999888875
No 444
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=71.66 E-value=1.3e+02 Score=31.36 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCC--CChhHHHHH----HHHHHHhcccccccCCccceEEeecccchhh-HHHH
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPA--ASKEDFEAV----RTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTA 165 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~--~s~~d~e~v----~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a 165 (620)
-..+++.|+.=++...+.|.++|++-.+. .-..+++.+ +++.+..... ..+-+|.=.+....++ |..+
T Consensus 78 G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~-----~~lKVIlEt~~L~~ee~i~~a 152 (257)
T PRK05283 78 GNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAAN-----VLLKVIIETGELKDEALIRKA 152 (257)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCC-----ceEEEEEeccccCCHHHHHHH
Confidence 45678999999999999999999997542 122355444 3333332100 1112333333344453 6667
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCHHHHHHHHHHHHHc-
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC-DDVEFSPEDAGRSDRKFLYEILGEVIKV- 243 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~-~~V~f~~ed~~r~d~e~l~~~~~~~~~a- 243 (620)
.+....+|++-|..... +. .-+-|.+. +..+++.+ ++.|. ..|-+-+ .++=.+.+...+++++..+.
T Consensus 153 ~~~a~~aGADFVKTSTG----f~--~~gAt~ed-v~lm~~~i---~~~~~~~~vgIKA-sGGIrt~~~A~~~i~ag~~~l 221 (257)
T PRK05283 153 SEIAIKAGADFIKTSTG----KV--PVNATLEA-ARIMLEVI---RDMGVAKTVGFKP-AGGVRTAEDAAQYLALADEIL 221 (257)
T ss_pred HHHHHHhCCCEEEcCCC----CC--CCCCCHHH-HHHHHHHH---HhcccCCCeeEEc-cCCCCCHHHHHHHHHHHHHHh
Confidence 66666778876554322 11 11234333 33333333 32221 1244433 35556677777887777654
Q ss_pred CCcEEeecCCccccCHHHHHHHHHH
Q 007056 244 GATTLNIPDTVGITMPTEFGKLIAD 268 (620)
Q Consensus 244 Ga~~I~L~DTvG~~~P~~v~~li~~ 268 (620)
|.++++ |+|.=...-.-..++.+.
T Consensus 222 g~~~~~-~~~fR~G~Ssll~~~~~~ 245 (257)
T PRK05283 222 GADWAD-ARHFRFGASSLLASLLKT 245 (257)
T ss_pred ChhhcC-cccEeeehHHhHHHHHHH
Confidence 777776 776655544444444443
No 445
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=71.66 E-value=2.9e+02 Score=35.16 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=113.6
Q ss_pred CCHHHHHHH----HHHHhHcCCCEEEEe-cCCCChhHHHH-HHHHHHHhcccccccCCccceEEe-ec-----cc-chhh
Q 007056 95 LTSKEKLDI----ARQLAKLGVDIIEAG-FPAASKEDFEA-VRTIAKEVGNAVDAESGYVPVICG-LS-----RC-NERD 161 (620)
Q Consensus 95 fs~~~Kl~I----a~~L~~~Gvd~IEvG-fP~~s~~d~e~-v~~i~~~~~~~~~~~~~l~~~i~~-~~-----r~-~~~d 161 (620)
++.++-.+. ++.|.+.|||.|=+- +| +-.+..+ +..+.+.....-. . .|.++. ++ |. .-.+
T Consensus 141 ~t~del~~~y~eq~~~L~~~GvD~iliETi~--d~~EakAal~a~~~~~~~~~~---~-lPv~vS~~~~d~~Gr~~~G~~ 214 (1178)
T TIGR02082 141 VTYDELVDAYTEQAKGLLDGGVDLLLIETCF--DTLNAKAALFAAETVFEEKGR---E-LPIMISGTIVDTSGRTLSGQT 214 (1178)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeccC--CHHHHHHHHHHHHHHHhhcCC---C-CeEEEEEEEECCCCeeCCCCc
Confidence 566666555 777888999987664 34 2233332 2222221100000 1 244444 22 21 1245
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCC-------CCCCCCHHHHH
Q 007056 162 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-------DAGRSDRKFLY 234 (620)
Q Consensus 162 I~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~e-------d~~r~d~e~l~ 234 (620)
++.++..+...+.+.|.+-++..+-++ .. .++.+....-..+...|- ..+..+|+++.
T Consensus 215 ~~~~~~~l~~~~~~avGlNCs~gP~~m-----------~~----~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a 279 (1178)
T TIGR02082 215 IEAFLTSLEHAGIDMIGLNCALGPDEM-----------RP----HLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELA 279 (1178)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHH-----------HH----HHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHH
Confidence 778888888788888877555444333 22 233333221112333221 12334678888
Q ss_pred HHHHHHHHc-CCcEEeecCCccccCHHHHHHHHHHHHHhCCCCC-----c------eeEEEe-----------c------
Q 007056 235 EILGEVIKV-GATTLNIPDTVGITMPTEFGKLIADIKANTPGIE-----N------VVISTH-----------C------ 285 (620)
Q Consensus 235 ~~~~~~~~a-Ga~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~-----~------v~i~~H-----------~------ 285 (620)
+.++...+. |+..|.=|= ..+|+.++.+-+.++..-|... . -++.+. +
T Consensus 280 ~~~~~~~~~ggv~IIGGCC---GTtPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k 356 (1178)
T TIGR02082 280 KALADFAAEGGLNIVGGCC---GTTPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSK 356 (1178)
T ss_pred HHHHHHHHhCCCcEEEecC---CCCHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhH
Confidence 888888876 587765221 3589999999888864333110 0 001111 0
Q ss_pred -------CCCcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 286 -------QNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 286 -------HND~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
-.|.--++.=+..-+++||+.||.... .....+-..++.++..|..
T Consensus 357 ~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn~~-~~~vd~~eem~rvv~~i~~ 409 (1178)
T TIGR02082 357 KFRRLIIAEDYDEALDIAKQQVENGAQILDINVD-YGMLDGVAAMKRFLNLLAS 409 (1178)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHh
Confidence 023335566667778999999999863 4444445555566666553
No 446
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=71.39 E-value=67 Score=36.03 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=70.5
Q ss_pred HHHHHhHcCCCEEEEecCCCChhH-------------HHHHHHHHHHhc-ccccccCCccceEEeecccchhhHHHHHHH
Q 007056 103 IARQLAKLGVDIIEAGFPAASKED-------------FEAVRTIAKEVG-NAVDAESGYVPVICGLSRCNERDIKTAWEA 168 (620)
Q Consensus 103 Ia~~L~~~Gvd~IEvGfP~~s~~d-------------~e~v~~i~~~~~-~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 168 (620)
.++.|.++||..|.+|.=+.+++. .++++.+.+. + ..+ -..-|.|+---..++++..++.
T Consensus 165 ~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~-g~~~v-----~~DlI~GlPgqT~e~~~~~l~~ 238 (449)
T PRK09058 165 KADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR-DRAAV-----VCDLIFGLPGQTPEIWQQDLAI 238 (449)
T ss_pred HHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC-CCCcE-----EEEEEeeCCCCCHHHHHHHHHH
Confidence 456677789999999964444322 1233333332 1 110 0123556555566777777777
Q ss_pred HhcCCCCEEEEE----ecCCHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHcCCCEEEE
Q 007056 169 VKYAKRPRIHTF----IATSGIHMEHKLRK-----TKQQVVEIARSMVKFARSLGCDDVEF 220 (620)
Q Consensus 169 l~~ag~~~v~i~----~~~Sd~h~~~~l~~-----t~ee~l~~~~~~v~~a~~~G~~~V~f 220 (620)
+...+.+.|.+| .+-+++.....-++ +.++..++...+++++.+.|+..++.
T Consensus 239 ~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~yei 299 (449)
T PRK09058 239 VRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQLSN 299 (449)
T ss_pred HHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEee
Confidence 777788888876 34456655444332 67888899999999999999875544
No 447
>PRK08185 hypothetical protein; Provisional
Probab=71.20 E-value=31 Score=36.47 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eecCCccccCHHHHHHHHHHHHHhCCCCCceeEE
Q 007056 204 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIPDTVGITMPTEFGKLIADIKANTPGIENVVIS 282 (620)
Q Consensus 204 ~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~ 282 (620)
.++++.|++.|+-.-.|+. .+.+.+..+++++.+.+...| .+.-..--..|.++..++..+.++. ++|+.
T Consensus 2 ~~~L~~A~~~~yaV~AfN~-----~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~----~vPV~ 72 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNV-----ADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRS----PVPFV 72 (283)
T ss_pred HHHHHHHHHcCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHC----CCCEE
Confidence 4677889998875346666 688999999999999987654 4433222224556788887777766 37777
Q ss_pred EecCCCcchHHHHHHHHHHhcCcE--Eeeccc
Q 007056 283 THCQNDLGLSTANTIAGACAGARQ--VEVTIN 312 (620)
Q Consensus 283 ~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~ 312 (620)
+| =|-|.-......|+++|.+- +|+|-.
T Consensus 73 lH--LDHg~~~e~i~~ai~~Gf~SVM~D~S~l 102 (283)
T PRK08185 73 IH--LDHGATIEDVMRAIRCGFTSVMIDGSLL 102 (283)
T ss_pred EE--CCCCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 65 46777788899999999654 576644
No 448
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=71.08 E-value=40 Score=36.86 Aligned_cols=109 Identities=12% Similarity=0.185 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHH-HHHHhcccccccCCccceEEeecccchhhHHHHHHH-Hh
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRT-IAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA-VK 170 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~-i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea-l~ 170 (620)
-.++.+...++++.-.+.||.+||.+||-..-.--+++.+ |++.....+ .+..++..|---..+|+++-++. |.
T Consensus 29 ~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv----~LaTKlp~~~~~~~edm~r~fneqLe 104 (391)
T COG1453 29 GSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKV----KLATKLPSWPVKDREDMERIFNEQLE 104 (391)
T ss_pred CCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceE----EEEeecCCccccCHHHHHHHHHHHHH
Confidence 4567888889999999999999999998632221234433 343221111 22334444544567888877643 55
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHH-----HHHHHHHHHHcCC
Q 007056 171 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEI-----ARSMVKFARSLGC 215 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~-----~~~~v~~a~~~G~ 215 (620)
..+.|.+.+|+ -+.++. +.++. +.+.++.+|+.|.
T Consensus 105 kl~~Dy~D~yl-------iH~l~~---e~~~k~~~~g~~df~~kak~eGk 144 (391)
T COG1453 105 KLGTDYIDYYL-------IHGLNT---ETWEKIERLGVFDFLEKAKAEGK 144 (391)
T ss_pred HhCCchhhhhh-------hccccH---HHHHHHHccChHHHHHHHHhcCc
Confidence 56777765543 233443 33333 3577888999884
No 449
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=71.08 E-value=22 Score=38.16 Aligned_cols=70 Identities=23% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
..+.++++.++|++.|.+-=+.| .|....++|+.+++..|+ ++|.+ +|- .....+..++++||+.|-+.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~---v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPN---VDVIA--GNV--VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCC---ceEEE--CCC--CCHHHHHHHHhcCCCEEEECC
Confidence 45778888899999877644444 346788899999998863 56654 222 445677888999999998643
No 450
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.08 E-value=44 Score=35.12 Aligned_cols=113 Identities=22% Similarity=0.268 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHcC---CcEEeecCCccccCHH-----HHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHH
Q 007056 227 RSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 298 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aG---a~~I~L~DTvG~~~P~-----~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANsla 298 (620)
|-..-.+..+.+.++..| ..++.|.|++..-.=+ .+.+.++.+|+++|.. ..|.+=+.| ..-++.
T Consensus 125 RKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~--~~I~VEv~t-----leea~~ 197 (273)
T PRK05848 125 RKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFT--AKIEIECES-----LEEAKN 197 (273)
T ss_pred CCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCC--ceEEEEeCC-----HHHHHH
Confidence 555556667777666664 3689999998754332 5678899999998842 335554554 556788
Q ss_pred HHHhcCcEEeeccccccCCcCcccHHHHHHHHHhcc--c-cccCccccCCChhhHHHHHH
Q 007056 299 GACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG--E-HILGGLYTGINTRHIVMASK 355 (620)
Q Consensus 299 Av~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~~~~--~-~~~~G~~t~idl~~L~~~s~ 355 (620)
|+++|||.|. .=|.+.|++........ . ...--..-||+++.+.+.++
T Consensus 198 A~~~GaDiI~---------LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~ 248 (273)
T PRK05848 198 AMNAGADIVM---------CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAK 248 (273)
T ss_pred HHHcCCCEEE---------ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHH
Confidence 9999999987 35667887777766522 1 11112345788887776653
No 451
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=70.92 E-value=52 Score=34.45 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=59.7
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKL------RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK 242 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l------~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~ 242 (620)
+..+|++.|-+ ..| -....+ ..|.++.+..++...+-++. ..|..+....+..+++...+-+.++.+
T Consensus 31 ~~~aG~d~ilv--GdS--lgm~~lG~~~t~~vtldem~~h~~aV~rg~~~---~~vv~DmPf~sy~~~e~a~~na~rl~~ 103 (263)
T TIGR00222 31 FADAGVDVILV--GDS--LGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN---CLIVTDLPFMSYATPEQALKNAARVMQ 103 (263)
T ss_pred HHHcCCCEEEE--Ccc--HhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC---ceEEeCCCcCCCCCHHHHHHHHHHHHH
Confidence 33568887653 222 222233 35778877766555444332 224445555555568888887777666
Q ss_pred -cCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEe
Q 007056 243 -VGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 284 (620)
Q Consensus 243 -aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H 284 (620)
+||+.|.|-|. .++.++|+.+.+. .+++--|
T Consensus 104 eaGa~aVkiEgg------~~~~~~i~~l~~~-----gIpV~gH 135 (263)
T TIGR00222 104 ETGANAVKLEGG------EWLVETVQMLTER-----GVPVVGH 135 (263)
T ss_pred HhCCeEEEEcCc------HhHHHHHHHHHHC-----CCCEEEe
Confidence 89999999996 4566777777664 2556544
No 452
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=70.87 E-value=30 Score=35.44 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEcCCCCCCCCHHHHHHHHHHHH
Q 007056 163 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVI 241 (620)
Q Consensus 163 ~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~-V~f~~ed~~r~d~e~l~~~~~~~~ 241 (620)
++.++.+..+|.+.|.+-.=+.+ ....+.++++|++|++. +.++| .|+.+.+..++..+-
T Consensus 72 ~~~i~~~~~aGad~it~H~Ea~~---------------~~~~~~i~~Ik~~G~kaGlalnP----~T~~~~l~~~l~~vD 132 (229)
T PRK09722 72 QDYIDQLADAGADFITLHPETIN---------------GQAFRLIDEIRRAGMKVGLVLNP----ETPVESIKYYIHLLD 132 (229)
T ss_pred HHHHHHHHHcCCCEEEECccCCc---------------chHHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHhcC
Confidence 33445555668887765322111 12446789999999862 66788 378888877776431
Q ss_pred HcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCC-ceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 242 KVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 242 ~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
-.=.=.++ |.-.|-..=.++.+-|+.+++..+... ++.|+ =|-|.-..|.-...++||+.+
T Consensus 133 ~VLvMsV~-PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie----VDGGI~~~~i~~~~~aGad~~ 194 (229)
T PRK09722 133 KITVMTVD-PGFAGQPFIPEMLDKIAELKALRERNGLEYLIE----VDGSCNQKTYEKLMEAGADVF 194 (229)
T ss_pred EEEEEEEc-CCCcchhccHHHHHHHHHHHHHHHhcCCCeEEE----EECCCCHHHHHHHHHcCCCEE
Confidence 11111122 344455544556666777776543211 23344 478999999999999999987
No 453
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=70.83 E-value=13 Score=39.29 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE-Eee-cCCccccCHHHHHHHHHHHHHhCCCCCc
Q 007056 201 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNI-PDTVGITMPTEFGKLIADIKANTPGIEN 278 (620)
Q Consensus 201 ~~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~-I~L-~DTvG~~~P~~v~~li~~l~~~~~~~~~ 278 (620)
...+++++.|++.|+-.-.|+. .+.+.+..+++++.+.+... |.+ +.++.++..+.+..++..+.++..
T Consensus 3 v~~~~ll~~A~~~~yAV~AfN~-----~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~---- 73 (287)
T PF01116_consen 3 VNMKELLKKAKEGGYAVPAFNV-----YNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEAS---- 73 (287)
T ss_dssp HHHHHHHHHHHHHT-BEEEEE------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHST----
T ss_pred ccHHHHHHHHHHCCCeEEEEee-----CCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcC----
Confidence 4567889999999986446776 57799999999999998654 433 356666656778888888888873
Q ss_pred eeEEEecCCCcchHHHHHHHHHHhcCcE--EeeccccccC
Q 007056 279 VVISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIGE 316 (620)
Q Consensus 279 v~i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~GlGE 316 (620)
+|+.+|. |-|....-...|+++|.+- +|+|-..+-|
T Consensus 74 vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee 111 (287)
T PF01116_consen 74 VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE 111 (287)
T ss_dssp SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH
T ss_pred CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH
Confidence 7787654 6666699999999999987 5999776655
No 454
>PRK03906 mannonate dehydratase; Provisional
Probab=70.66 E-value=69 Score=35.40 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=36.5
Q ss_pred CHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCEEEEcCC---CCCCCCH
Q 007056 184 SGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRSDR 230 (620)
Q Consensus 184 Sd~h~~~~l~~-t~ee~l~~~~~~v~~a~~~G~~~V~f~~e---d~~r~d~ 230 (620)
.++|-..|++. ++++.++...++++.+-..|++.++|+++ |-+|++.
T Consensus 65 ~pv~~~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~icYnfmpv~dwtrt~l 115 (385)
T PRK03906 65 VPVHEDIKTGTPNRDRYIENYKQTLRNLAAAGIKVVCYNFMPVFDWTRTDL 115 (385)
T ss_pred CCccHHHHcCCCCHHHHHHHHHHHHHHHHhcCCcEEEecCcccccccCccc
Confidence 45566667765 78999999999999999999987888775 4556654
No 455
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=70.42 E-value=28 Score=37.89 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHc
Q 007056 165 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 243 (620)
Q Consensus 165 a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~~~~~~~~a 243 (620)
.++.++.+|+.+|++-+=+.+-.+...+++. ...+.+.++++.+++.|+..|.++...+ ...+.+.+.+.++.+.+.
T Consensus 102 ~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~--~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l 179 (377)
T PRK08599 102 KLQVLKDSGVNRISLGVQTFNDELLKKIGRT--HNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALAL 179 (377)
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHcc
Confidence 4567778899999997766655666667764 2356778899999999975444433322 244567788888999999
Q ss_pred CCcEEee
Q 007056 244 GATTLNI 250 (620)
Q Consensus 244 Ga~~I~L 250 (620)
+++.|.+
T Consensus 180 ~~~~i~~ 186 (377)
T PRK08599 180 DIPHYSA 186 (377)
T ss_pred CCCEEee
Confidence 9887644
No 456
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=70.41 E-value=79 Score=32.96 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=12.9
Q ss_pred HHHHhHcCCCEEEEecCC
Q 007056 104 ARQLAKLGVDIIEAGFPA 121 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGfP~ 121 (620)
++.+.+.|++.|-+.+|.
T Consensus 84 ~~~a~~~g~~~i~i~~~~ 101 (273)
T cd07941 84 LQALLEAGTPVVTIFGKS 101 (273)
T ss_pred HHHHHhCCCCEEEEEEcC
Confidence 555667888888887664
No 457
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=70.17 E-value=46 Score=35.62 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eecC-CccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIPD-TVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~D-TvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|+. .+.+.+..+++++.+.+...| .+.. +..++-+..+..++..+.++.+ .+|
T Consensus 5 ~k~lL~~A~~~~yaV~AfN~-----~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~---~VP 76 (307)
T PRK05835 5 GNEILLKAHKEGYGVGAFNF-----VNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYP---HIP 76 (307)
T ss_pred HHHHHHHHHHCCceEEEEEE-----CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcC---CCe
Confidence 45778889999875346665 688999999999999986644 3332 2233445667778877777664 267
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeeccccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 314 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~Gl 314 (620)
+.+| =|-|.-......|+++|.+- +|+|-..+
T Consensus 77 ValH--LDHg~~~e~i~~ai~~GftSVM~DgS~l~~ 110 (307)
T PRK05835 77 VALH--LDHGTTFESCEKAVKAGFTSVMIDASHHAF 110 (307)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 8755 46777788899999999986 58886554
No 458
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=70.02 E-value=1.6e+02 Score=31.46 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEecCC---CChhHHH-----HHHHHHHHh
Q 007056 96 TSKEKLDIARQLAKLGVDIIEAGFPA---ASKEDFE-----AVRTIAKEV 137 (620)
Q Consensus 96 s~~~Kl~Ia~~L~~~Gvd~IEvGfP~---~s~~d~e-----~v~~i~~~~ 137 (620)
-++.-+++++.+.++|++.|-++-|. -+|+.|+ ..++|.+.+
T Consensus 175 it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i 224 (335)
T cd00717 175 LTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEV 224 (335)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34445677787788999999877542 3676663 235555543
No 459
>PRK06247 pyruvate kinase; Provisional
Probab=69.83 E-value=2e+02 Score=32.68 Aligned_cols=156 Identities=26% Similarity=0.303 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 94 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.||.+++..| +...+.|||+|=+.|.. +++|...+|.+... .. ...+.| -+.+.++.. +.+...
T Consensus 170 ~ltekD~~di-~f~~~~~vD~ia~SFVr-~a~Di~~~r~~l~~---~~----~iiaKI-----Et~eav~nl-deI~~~- 233 (476)
T PRK06247 170 ALTEKDRADL-EFALELGVDWVALSFVQ-RPEDVEEVRKIIGG---RV----PVMAKI-----EKPQAIDRL-EAIVEA- 233 (476)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEECCCC-CHHHHHHHHHHhhh---cC----eEEEEE-----CCHHHHHhH-HHHHHH-
Confidence 4788888776 56778999999998864 67777777776532 10 111222 122333321 112211
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE------cCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSDRKFLYEILGEVIKVGATT 247 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f------~~ed~~r~d~e~l~~~~~~~~~aGa~~ 247 (620)
.|. ++++-.|+-++ +..+++.....+.++.|+++|.. |.. |...-.+-....+-+++.++. -|+|.
T Consensus 234 ~Dg--ImVaRGDLgve----~g~~~v~~~qk~ii~~~~~~gkp-vI~ATQmLeSM~~np~PTRAEvtDVaNAV~-dG~Da 305 (476)
T PRK06247 234 SDA--IMVARGDLGVE----VPLEQVPLIQKRIIRAARRAGKP-VVVATQMLESMIENPVPTRAEVSDVATAVL-DGADA 305 (476)
T ss_pred cCE--EEEccchhccc----cCHHHHHHHHHHHHHHHHHhCCC-EEEECchHHHhhcCCCCCcchhHHHHHHHH-hCCcE
Confidence 344 45566665443 34478888888999999999975 433 222222333455667777665 49999
Q ss_pred Eeec-CCccccCHHHHHHHHHHHHHhC
Q 007056 248 LNIP-DTVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 248 I~L~-DTvG~~~P~~v~~li~~l~~~~ 273 (620)
+-|. -|.=...|.+.-+.+..+....
T Consensus 306 vMLS~ETA~G~yPveaV~~m~~I~~~a 332 (476)
T PRK06247 306 VMLSAETASGKYPVEAVRTMARIIRQV 332 (476)
T ss_pred EEEcchhcCCCCHHHHHHHHHHHHHHH
Confidence 9998 5666678988887777777654
No 460
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=69.65 E-value=1.2e+02 Score=31.73 Aligned_cols=164 Identities=21% Similarity=0.178 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHhHcC--CCEEEE--ecCCCCh------hHHHHHHHHHHHhcccccccCCccceEEeecccchhhHH
Q 007056 94 TLTSKEKLDIARQLAKLG--VDIIEA--GFPAASK------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 163 (620)
Q Consensus 94 ~fs~~~Kl~Ia~~L~~~G--vd~IEv--GfP~~s~------~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 163 (620)
..+.++-.++++.+.+.| +|.||+ |.|.... ++.+.+.++.+.+...+ + .|..+= .+...+++.
T Consensus 99 g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~----~pv~vK-i~~~~~~~~ 172 (300)
T TIGR01037 99 GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-D----VPVFAK-LSPNVTDIT 172 (300)
T ss_pred cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-C----CCEEEE-CCCChhhHH
Confidence 357899999999999874 999999 5564321 24455555555443221 1 122211 133344555
Q ss_pred HHHHHHhcCCCCEEEEEecCCH--HHHHH--------HhCCCHHHHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCHHH
Q 007056 164 TAWEAVKYAKRPRIHTFIATSG--IHMEH--------KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKF 232 (620)
Q Consensus 164 ~a~eal~~ag~~~v~i~~~~Sd--~h~~~--------~l~~t~ee~l~~~~~~v~~a~~~-G~~~V~f~~ed~~r~d~e~ 232 (620)
...+.+..+|++.|++...+.. ..... .-+.+-........+.+..+++. ++. |.. .++=.+++.
T Consensus 173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ip-vi~---~GGI~s~~d 248 (300)
T TIGR01037 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIP-IIG---VGGITSFED 248 (300)
T ss_pred HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCC-EEE---ECCCCCHHH
Confidence 5556667789999987643321 00000 00122222222334455555553 343 332 244566676
Q ss_pred HHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
+.+++ .+|||.+.++=. =...|+-+.++.+.+.+.
T Consensus 249 a~~~l----~~GAd~V~igr~-~l~~p~~~~~i~~~l~~~ 283 (300)
T TIGR01037 249 ALEFL----MAGASAVQVGTA-VYYRGFAFKKIIEGLIAF 283 (300)
T ss_pred HHHHH----HcCCCceeecHH-HhcCchHHHHHHHHHHHH
Confidence 66655 468887766522 233677666666666554
No 461
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=69.56 E-value=1.2e+02 Score=29.99 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCccccC---HHHHHHHHHHHHHhCCCCC-ceeEEEecCCCcchHHHHHHHHHHhc
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTVGITM---PTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAG 303 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~---P~~v~~li~~l~~~~~~~~-~v~i~~H~HND~GlAvANslaAv~aG 303 (620)
...+....-++.+.+.|||.|-+.=-.|... -+++.+-+..+++...+.. .+.++.-.-++--. .--+..|+++|
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i-~~a~ria~e~G 144 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEI-IKACEIAIEAG 144 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHH-HHHHHHHHHhC
Confidence 4445455556677778888777766666432 2446666666666543221 22333332322222 22367799999
Q ss_pred CcEEeeccccccCCcCcccHHHHHHHHHh
Q 007056 304 ARQVEVTINGIGERAGNASLEEVVMAFKC 332 (620)
Q Consensus 304 A~~Vd~Ti~GlGERaGNa~lEevv~~L~~ 332 (620)
||+|-++ -|.+ .+++.++++-...+.
T Consensus 145 aD~IKTs-TG~~--~~~at~~~v~~~~~~ 170 (203)
T cd00959 145 ADFIKTS-TGFG--PGGATVEDVKLMKEA 170 (203)
T ss_pred CCEEEcC-CCCC--CCCCCHHHHHHHHHH
Confidence 9999999 4443 467888875544443
No 462
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=69.46 E-value=1.9e+02 Score=32.26 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=11.0
Q ss_pred cCcccHHHHHHHHHh
Q 007056 318 AGNASLEEVVMAFKC 332 (620)
Q Consensus 318 aGNa~lEevv~~L~~ 332 (620)
.|+..++.+...++.
T Consensus 365 ~G~Ig~~~f~~l~~~ 379 (413)
T PTZ00372 365 KGKLGMETFKFIMNS 379 (413)
T ss_pred CCCcChHHHHHHHhC
Confidence 488888887777763
No 463
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=69.46 E-value=80 Score=32.83 Aligned_cols=60 Identities=13% Similarity=0.292 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHc-CCc-EEeecCCccccCHHHHH
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GAT-TLNIPDTVGITMPTEFG 263 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a-Ga~-~I~L~DTvG~~~P~~v~ 263 (620)
+.+.++.+.+.|...+++.- ..+...|+.+.++++.+.+. +.. .+=.=||.|.++.+-+.
T Consensus 143 l~~~~~~~~~~g~~~i~l~D-t~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~ 204 (262)
T cd07948 143 LLRVYRAVDKLGVNRVGIAD-TVGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYA 204 (262)
T ss_pred HHHHHHHHHHcCCCEEEECC-cCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHH
Confidence 34556666666765444322 24566677777777776654 221 23444777776554333
No 464
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.42 E-value=1e+02 Score=28.96 Aligned_cols=33 Identities=12% Similarity=0.336 Sum_probs=21.7
Q ss_pred HHHHHHHHhHcCCCEEEEecCCCChhHHHHHHHHHH
Q 007056 100 KLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAK 135 (620)
Q Consensus 100 Kl~Ia~~L~~~Gvd~IEvGfP~~s~~d~e~v~~i~~ 135 (620)
|.-++..|...|++.|-.|-- .+++ ++++...+
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~-v~~e--~~v~aa~~ 50 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVL-SPQE--EFIKAAIE 50 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCC-CCHH--HHHHHHHH
Confidence 556777888899999999853 3443 34444443
No 465
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.23 E-value=48 Score=35.15 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCcEEeecCCcccc-------------------C---HHHHHHHHHHHHHhCCCCCceeEEEecC--C-
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGIT-------------------M---PTEFGKLIADIKANTPGIENVVISTHCQ--N- 287 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~-------------------~---P~~v~~li~~l~~~~~~~~~v~i~~H~H--N- 287 (620)
+.+.++.+.++|.|.|-|-=..|++ . +..+.++++.+++.++. +++|++-.+ +
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~--d~~i~vris~~~~ 220 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP--DFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC--CceEEEEechhcc
Confidence 3345556677898887764333432 1 23356888999998854 456666443 2
Q ss_pred -----CcchHHHHHHHHHHhcCcEEeecccc
Q 007056 288 -----DLGLSTANTIAGACAGARQVEVTING 313 (620)
Q Consensus 288 -----D~GlAvANslaAv~aGA~~Vd~Ti~G 313 (620)
+.--+..-+-...++|+++|+.+-..
T Consensus 221 ~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 221 VPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 22223334445567899999987654
No 466
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=69.18 E-value=17 Score=38.80 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCcc---ccCHHHHHHHHH----HHHHhCCCCCceeEEEecCCCcchHHHHHHHH-HHh
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIA----DIKANTPGIENVVISTHCQNDLGLSTANTIAG-ACA 302 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG---~~~P~~v~~li~----~l~~~~~~~~~v~i~~H~HND~GlAvANslaA-v~a 302 (620)
+.+.+.+++..++|++.|.++|..+ .+.|+++.+++. .+.+.+... .....+|++-+.. +-+.. .+.
T Consensus 180 ~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~-g~~~ilH~CG~~~----~~~~~l~~~ 254 (340)
T TIGR01463 180 DFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI-GGITVLHICGFTQ----PILRDIANN 254 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc-CCceEEEECCCch----hhHHHHHHh
Confidence 3455666677789999999999876 678988877652 333332111 1345688886642 22333 355
Q ss_pred cCcEEe
Q 007056 303 GARQVE 308 (620)
Q Consensus 303 GA~~Vd 308 (620)
|++.++
T Consensus 255 g~d~ls 260 (340)
T TIGR01463 255 GCFGFS 260 (340)
T ss_pred CCCEEe
Confidence 887754
No 467
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=68.99 E-value=13 Score=39.61 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCcEEeecC-CccccCHHHHHHHH
Q 007056 231 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI 266 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~D-TvG~~~P~~v~~li 266 (620)
+.+.+++++.+++||+.|.++| +.+.+.|+++.+++
T Consensus 177 ~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~ 213 (335)
T cd00717 177 DATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFV 213 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHH
Confidence 4566777777889999999999 67788898887665
No 468
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=68.91 E-value=32 Score=34.68 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCC--CCCceeEEEecC---C---CcchHHHH-HH
Q 007056 227 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP--GIENVVISTHCQ---N---DLGLSTAN-TI 297 (620)
Q Consensus 227 r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~--~~~~v~i~~H~H---N---D~GlAvAN-sl 297 (620)
+.+.+.....++.+.++||+.+.+-...|.....++.+.+..+++... +. .+.+..|.+ - ....-+.- +.
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~-~~iie~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGL-PLIAWMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC-CEEEEEeccCCcccCccCHHHHHHHHH
Confidence 344455556678888999999988888887766667767776665321 22 255555541 0 00012232 55
Q ss_pred HHHHhcCcEEeec
Q 007056 298 AGACAGARQVEVT 310 (620)
Q Consensus 298 aAv~aGA~~Vd~T 310 (620)
.|.++|||+|=+.
T Consensus 151 ~a~~~GaD~Ik~~ 163 (235)
T cd00958 151 IGAELGADIVKTK 163 (235)
T ss_pred HHHHHCCCEEEec
Confidence 6888999998774
No 469
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=68.88 E-value=29 Score=39.39 Aligned_cols=70 Identities=24% Similarity=0.201 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeecc
Q 007056 233 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 311 (620)
Q Consensus 233 l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti 311 (620)
-.+.++++.++|++.|.+=++-|. +..+.+.++.+++.+|+ ++|.+ -.++-...+..++++||+.|...+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~---~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPD---VQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCC---CCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 368888999999998865444555 46788999999999874 55555 345556678999999999999644
No 470
>PRK13753 dihydropteroate synthase; Provisional
Probab=68.85 E-value=28 Score=36.76 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=49.7
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCcEEeecCCcc--ccC----HHHHH---HHHHHHHHhCCCCCceeEEEecCCCcchHH
Q 007056 224 DAGRS-DRKFLYEILGEVIKVGATTLNIPDTVG--ITM----PTEFG---KLIADIKANTPGIENVVISTHCQNDLGLST 293 (620)
Q Consensus 224 d~~r~-d~e~l~~~~~~~~~aGa~~I~L~DTvG--~~~----P~~v~---~li~~l~~~~~~~~~v~i~~H~HND~GlAv 293 (620)
|+++. +++.+.+-++.+.+.||++|-|.=-.. ... -+|+. ..|+.+++. .++|++ |++--.+
T Consensus 17 DGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-----~~~ISI---DT~~~~v 88 (279)
T PRK13753 17 DESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-----MHRVSI---DSFQPET 88 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-----CCcEEE---ECCCHHH
Confidence 66764 889999999999999999987642111 111 13566 445555543 256777 4555444
Q ss_pred HHHHHHHHhcCcEEee
Q 007056 294 ANTIAGACAGARQVEV 309 (620)
Q Consensus 294 ANslaAv~aGA~~Vd~ 309 (620)
| .+|+++||+.|+-
T Consensus 89 a--~~al~aGadiIND 102 (279)
T PRK13753 89 Q--RYALKRGVGYLND 102 (279)
T ss_pred H--HHHHHcCCCEEEe
Confidence 4 5789999999854
No 471
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=68.80 E-value=69 Score=33.32 Aligned_cols=90 Identities=13% Similarity=0.036 Sum_probs=54.7
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHH
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLR------KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIK 242 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~------~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~-r~d~e~l~~~~~~~~~ 242 (620)
..+|++.+- . .+.-.-..+| .|.+|.+..+....+-+ ....|..+.+..+ ..+++.+.+-+.++.+
T Consensus 29 e~aG~d~i~--v--Gds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~---~~p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 29 DEAGVDVIL--V--GDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA---PRALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHcCCCEEE--E--CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 346888774 2 2222222243 46777766555444322 2222455566444 4558887777666665
Q ss_pred -cCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 243 -VGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 243 -aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
+||+.|+|-|. .++.+.|+.+++.
T Consensus 102 ~aGa~aVkiEd~------~~~~~~I~al~~a 126 (254)
T cd06557 102 EAGADAVKLEGG------AEVAETIRALVDA 126 (254)
T ss_pred HhCCeEEEEcCc------HHHHHHHHHHHHc
Confidence 99999999996 3777888888764
No 472
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=68.73 E-value=1.1e+02 Score=33.56 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=60.9
Q ss_pred chhhHH-HHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHH
Q 007056 158 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 235 (620)
Q Consensus 158 ~~~dI~-~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~-~r~d~e~l~~ 235 (620)
++.++. .-++.++.+|+.+|.+=+=+-+-.....+|+.. ..+.+.++++.+++.+.. |.++...+ ...+.+.+.+
T Consensus 98 ~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~--~~~~~~~ai~~~~~~~~~-v~~dli~GlPgqt~~~~~~ 174 (380)
T PRK09057 98 NPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLH--SVAEALAAIDLAREIFPR-VSFDLIYARPGQTLAAWRA 174 (380)
T ss_pred CcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHhCcc-EEEEeecCCCCCCHHHHHH
Confidence 444453 346778888999999877666666666777642 234556677888877653 65544433 2445666667
Q ss_pred HHHHHHHcCCcEEeecC
Q 007056 236 ILGEVIKVGATTLNIPD 252 (620)
Q Consensus 236 ~~~~~~~aGa~~I~L~D 252 (620)
-++.+.+.+++.|.+-.
T Consensus 175 ~l~~~~~l~p~~is~y~ 191 (380)
T PRK09057 175 ELKEALSLAADHLSLYQ 191 (380)
T ss_pred HHHHHHhcCCCeEEeec
Confidence 78888889998877653
No 473
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=68.69 E-value=45 Score=36.25 Aligned_cols=101 Identities=13% Similarity=0.182 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eec-CCccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIP-DTVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|++ .+.+.+..+++++.+.+...| .+. .+..++-...+..++..+.+..+ .+|
T Consensus 6 ~k~lL~~A~~~~yaV~AfN~-----~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~---~VP 77 (347)
T PRK13399 6 LRQLLDHAAENGYGVPAFNV-----NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP---DIP 77 (347)
T ss_pred HHHHHHHHHHCCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC---CCc
Confidence 45778889999875346666 678999999999999987644 333 33444555668888888887764 266
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeecccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTING 313 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~G 313 (620)
+.+| =|-|.-......|+++|.+- +|+|-..
T Consensus 78 VaLH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l~ 110 (347)
T PRK13399 78 ICLH--QDHGNSPATCQSAIRSGFTSVMMDGSLLA 110 (347)
T ss_pred EEEE--CCCCCCHHHHHHHHhcCCCEEEEeCCCCC
Confidence 7755 57777788899999999986 6998764
No 474
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=68.59 E-value=44 Score=35.35 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcE-EeecC-CccccCHHHHHHHHHHHHHhCCCCCcee
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPD-TVGITMPTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~-I~L~D-TvG~~~P~~v~~li~~l~~~~~~~~~v~ 280 (620)
..++++.|++.|+-.-.|++ .+.+.+..+++++.+.++.. |.+.- +.-++-...+..++..+.++. ++|
T Consensus 6 ~k~ll~~A~~~~yaV~AfN~-----~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~----~vP 76 (283)
T PRK07998 6 GRILLDRIQEKHVLAGAFNT-----TNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKM----DVP 76 (283)
T ss_pred HHHHHHHHHHCCCEEEEEee-----CCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHC----CCC
Confidence 45677889999875346766 57899999999999998654 34322 223334566777888777776 377
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--Eeeccc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTIN 312 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~ 312 (620)
+.+|. |-|.-......|+++|.+- +|+|-.
T Consensus 77 V~lHL--DH~~~~e~i~~Ai~~GftSVM~DgS~l 108 (283)
T PRK07998 77 VSLHL--DHGKTFEDVKQAVRAGFTSVMIDGAAL 108 (283)
T ss_pred EEEEC--cCCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 87654 6666788889999999987 477654
No 475
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=68.36 E-value=1.3e+02 Score=33.81 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEecCCCC--h-----hH-HHHHHHHHHHhcccccccCCccceEEeecccchhhH-H
Q 007056 93 ATLTSKEKLDIARQLAKLGVDIIEAGFPAAS--K-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-K 163 (620)
Q Consensus 93 ~~fs~~~Kl~Ia~~L~~~Gvd~IEvGfP~~s--~-----~d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~ 163 (620)
.+.+.++.++=++.|.+.|++.|-.-..-.+ . .+ .+.++.|.+..+ . ..+. |.-..+.++ +
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~-------~--~rir-~~~~~p~~l~~ 245 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAP-------E--MRIR-FTTSHPKDISE 245 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCC-------C--cEEE-EccCChhhcCH
Confidence 5688999999999999999998877311000 1 11 133344332111 1 1221 211233333 2
Q ss_pred HHHHHHhcC--CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCC---EEEEcCCCCCCCCHHHHHHH
Q 007056 164 TAWEAVKYA--KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCD---DVEFSPEDAGRSDRKFLYEI 236 (620)
Q Consensus 164 ~a~eal~~a--g~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--G~~---~V~f~~ed~~r~d~e~l~~~ 236 (620)
.-++.++.+ +.+.+|+-+=+.+-.+...+++. ...+...++++.+++. |+. .+.++.... +.+.+.+.
T Consensus 246 ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~--~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgE---T~edf~~t 320 (445)
T PRK14340 246 SLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRG--HTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGE---TEEDHRAT 320 (445)
T ss_pred HHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEeccEEEECCCC---CHHHHHHH
Confidence 334555554 67888886544333444456553 2345677788888887 763 133443222 34555566
Q ss_pred HHHHHHcCCcEEe
Q 007056 237 LGEVIKVGATTLN 249 (620)
Q Consensus 237 ~~~~~~aGa~~I~ 249 (620)
++.+.+.+.+.+.
T Consensus 321 l~~~~~~~~~~~~ 333 (445)
T PRK14340 321 LSLMEEVRFDSAF 333 (445)
T ss_pred HHHHHhcCCCEEe
Confidence 6666677765543
No 476
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=68.30 E-value=64 Score=37.69 Aligned_cols=142 Identities=8% Similarity=-0.009 Sum_probs=80.9
Q ss_pred ccchhhHHHHHHHHhcCCCCEEEEEec-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEcC----CCCCCCCH
Q 007056 156 RCNERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP----EDAGRSDR 230 (620)
Q Consensus 156 r~~~~dI~~a~eal~~ag~~~v~i~~~-~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~~----ed~~r~d~ 230 (620)
|.+.+|+.+..+.+..+|+..|.+... +.|.- -..++-+..|.++.++ +.+.+.-+ ..+.. .--.+++.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~-~~~~~e~p~e~lr~l~---~~~~~~~l--qml~Rg~n~vg~~~ypd 96 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDAC-IRFLGEDPWERLRELK---KAMPNTPQ--QMLLRGQNLLGYRHYAD 96 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhh-ccccCCCHHHHHHHHH---HhCCCCeE--EEEecCcceeccccCcH
Confidence 667788888778888889999988633 33321 1223445444444333 33222111 01111 11223455
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEE--ec-CCCcchHHHHHHHHHHhcCcEE
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST--HC-QNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~--H~-HND~GlAvANslaAv~aGA~~V 307 (620)
+-+...++.+.+.|+++|.+.|...- ...+...|+.+++.-.. -...|++ -. | |...=+.-+..+.++||+.|
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~lnd--~~~~~~ai~~ak~~G~~-~~~~i~yt~~p~~-~~~~~~~~a~~l~~~Gad~i 172 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAMND--PRNLETALKAVRKVGAH-AQGTLSYTTSPVH-TLQTWVDLAKQLEDMGVDSL 172 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeCCc--HHHHHHHHHHHHHcCCe-EEEEEEEeeCCcc-CHHHHHHHHHHHHHcCCCEE
Confidence 66777899999999999999996554 45677888888875211 0112322 11 3 23333444556677898876
No 477
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=68.27 E-value=81 Score=35.39 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=65.5
Q ss_pred HHHHHHhHcCCCEEEEecCCCChhH-------------HHHHHHHHHHhcccccccCCc-cceEEeecccchhhHHHHHH
Q 007056 102 DIARQLAKLGVDIIEAGFPAASKED-------------FEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGfP~~s~~d-------------~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~e 167 (620)
+.++.|.++|++.|.+|.=+.+++. .+.++.+.+. +-. .. +.-|.|+-.-+.+++...++
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~-G~~-----~v~~dli~GlPgqt~e~~~~tl~ 226 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA-GFE-----SINFDLIYGLPHQTVESFRETLD 226 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-CCC-----cEEEeEEEeCCCCCHHHHHHHHH
Confidence 5567777789999999864444322 1233333321 110 01 12466777777888888888
Q ss_pred HHhcCCCCEEEEEecC-CHHH--HHHHhC----CCHHHHHHHHHHHHHHHHHcCCCEE
Q 007056 168 AVKYAKRPRIHTFIAT-SGIH--MEHKLR----KTKQQVVEIARSMVKFARSLGCDDV 218 (620)
Q Consensus 168 al~~ag~~~v~i~~~~-Sd~h--~~~~l~----~t~ee~l~~~~~~v~~a~~~G~~~V 218 (620)
.+...+.+.|.+|.-+ .+.. .+..++ -+.++.+++...+++.+.+.|+..+
T Consensus 227 ~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~ 284 (453)
T PRK13347 227 KVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPI 284 (453)
T ss_pred HHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 8777888888877322 1111 111111 2456777888888888888887543
No 478
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=68.23 E-value=99 Score=33.54 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=70.7
Q ss_pred HHHHHHhHcCCCEEEEecCCCChhH-------------HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHH
Q 007056 102 DIARQLAKLGVDIIEAGFPAASKED-------------FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 168 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGfP~~s~~d-------------~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 168 (620)
+.++.|.++|++.|.+|.-+.+++. .++++.+.+. +-. . --..-|.|+-.-+.++++..++.
T Consensus 100 e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~-g~~---~-v~~dli~GlPgqt~e~~~~~l~~ 174 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL-GFN---N-INVDLMFGLPNQTLEDWKETLEK 174 (374)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCC---c-EEEEeecCCCCCCHHHHHHHHHH
Confidence 4678888899999999975554432 2333333332 100 0 00124556655677888888888
Q ss_pred HhcCCCCEEEEEe----cCCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCCEE
Q 007056 169 VKYAKRPRIHTFI----ATSGIHMEHKLR----KTKQQVVEIARSMVKFARSLGCDDV 218 (620)
Q Consensus 169 l~~ag~~~v~i~~----~~Sd~h~~~~l~----~t~ee~l~~~~~~v~~a~~~G~~~V 218 (620)
+...+.+.|.+|. +-++++...+-+ .+.++..++...+.+++.+.|+...
T Consensus 175 ~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~y 232 (374)
T PRK05799 175 VVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQY 232 (374)
T ss_pred HHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEE
Confidence 8888888887763 445555443322 2456677777778888888998643
No 479
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=68.10 E-value=59 Score=37.15 Aligned_cols=144 Identities=10% Similarity=0.030 Sum_probs=78.4
Q ss_pred cccchhhHHHHHHHHhcCCCCEEEEEecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE---cCCCCCCCCH
Q 007056 155 SRCNERDIKTAWEAVKYAKRPRIHTFIAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPEDAGRSDR 230 (620)
Q Consensus 155 ~r~~~~dI~~a~eal~~ag~~~v~i~~~~-Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f---~~ed~~r~d~ 230 (620)
+|.+.+|+...++.+..+|+..|.+.... .|.- -+-++-++-|.++.++ +.+...-+. .-+ +..--...+.
T Consensus 22 tr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~-~rfl~Edpwerlr~lr---~~~~nt~lq-mL~Rg~N~vGy~~y~d 96 (499)
T PRK12330 22 TRMAMEDMVGACEDIDNAGYWSVECWGGATFDAC-IRFLNEDPWERLRTFR---KLMPNSRLQ-MLLRGQNLLGYRHYED 96 (499)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhh-hcccCCCHHHHHHHHH---HhCCCCeEE-EEEcccccCCccCcch
Confidence 46677787777777878888888886333 2211 1233444444444333 332222111 111 1111123344
Q ss_pred HHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEE---ecCCCcchHHHHHHHHHHhcCcEE
Q 007056 231 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST---HCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 231 e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~---H~HND~GlAvANslaAv~aGA~~V 307 (620)
+-+...++.+.+.|+++|.+.|..--. +.+...++.+++.-... ...|++ +-| |...=+.-+..+.++||+.|
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~-~~~i~yt~sp~~-t~e~~~~~a~~l~~~Gad~I 172 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHA-QGTICYTVSPIH-TVEGFVEQAKRLLDMGADSI 172 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeE-EEEEEEecCCCC-CHHHHHHHHHHHHHcCCCEE
Confidence 566667788888888888888876544 55666667666642211 123333 344 44444555666777888876
No 480
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=67.87 E-value=1.1e+02 Score=31.94 Aligned_cols=144 Identities=21% Similarity=0.266 Sum_probs=87.7
Q ss_pred HHHHHHHHhHcCCCEEEEec-------------CCCChhHHHHHHHHHHHhccccc-ccCCccceEEeecccchhhHHHH
Q 007056 100 KLDIARQLAKLGVDIIEAGF-------------PAASKEDFEAVRTIAKEVGNAVD-AESGYVPVICGLSRCNERDIKTA 165 (620)
Q Consensus 100 Kl~Ia~~L~~~Gvd~IEvGf-------------P~~s~~d~e~v~~i~~~~~~~~~-~~~~l~~~i~~~~r~~~~dI~~a 165 (620)
-...++.+++.|+|.|=+|- |.+.++..-..+..++-.++.+. .| + | +..+.-..++-++.|
T Consensus 24 D~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~D--m-P-F~sy~~s~~~a~~nA 99 (268)
T COG0413 24 DYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVAD--L-P-FGSYEVSPEQALKNA 99 (268)
T ss_pred ccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEEeC--C-C-CcccCCCHHHHHHHH
Confidence 35678999999999999983 22222223233444433222210 00 0 1 111222234557778
Q ss_pred HHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE---EEEcCCC---------CCCC--CHH
Q 007056 166 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD---VEFSPED---------AGRS--DRK 231 (620)
Q Consensus 166 ~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~---V~f~~ed---------~~r~--d~e 231 (620)
.+.++++|.+.|.+-.. ..+.+.|+++.+.|+.. |-+.|.. -+|. +.+
T Consensus 100 ~r~~ke~gA~aVKlEGG------------------~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~a~ 161 (268)
T COG0413 100 ARLMKEAGADAVKLEGG------------------EEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEESAE 161 (268)
T ss_pred HHHHHHhCCCEEEEcCC------------------HHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHHHH
Confidence 88888889999887544 23557788888888862 1222321 1233 346
Q ss_pred HHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHH
Q 007056 232 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIK 270 (620)
Q Consensus 232 ~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~ 270 (620)
.+++-++++.++||-.+.|- ..|.++++.|..-.
T Consensus 162 ~l~~dA~ale~AGaf~ivlE-----~Vp~~lA~~IT~~l 195 (268)
T COG0413 162 KLLEDAKALEEAGAFALVLE-----CVPAELAKEITEKL 195 (268)
T ss_pred HHHHHHHHHHhcCceEEEEe-----ccHHHHHHHHHhcC
Confidence 77778888999999988875 67988888877643
No 481
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=67.75 E-value=17 Score=39.42 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCCcccc-CHHHHHHHHHHHHHhCCCCCceeEEEec---------CCCcchHHH
Q 007056 225 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGIT-MPTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLSTA 294 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~-~P~~v~~li~~l~~~~~~~~~v~i~~H~---------HND~GlAvA 294 (620)
.++.++|.+.+.++.+.+.|++++.|.+....- ..+.+.++++.+++.+|+ +.+|+ =+-.|+-.-
T Consensus 76 ~y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~-----i~i~~~~~~ei~~~~~~~g~~~~ 150 (351)
T TIGR03700 76 AYAMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD-----LHVKAFTAVEIHHFSKISGLPTE 150 (351)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-----ceEEeCCHHHHHHHHHHcCCCHH
Confidence 334688999999998888999999987433222 236788999999998874 33333 134577666
Q ss_pred HHHHHH-HhcCcEEe
Q 007056 295 NTIAGA-CAGARQVE 308 (620)
Q Consensus 295 NslaAv-~aGA~~Vd 308 (620)
..+..+ +||++.+.
T Consensus 151 e~l~~LkeAGld~~~ 165 (351)
T TIGR03700 151 EVLDELKEAGLDSMP 165 (351)
T ss_pred HHHHHHHHcCCCcCC
Confidence 756655 47998876
No 482
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=67.67 E-value=37 Score=35.83 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eec-CCccccC-HHHHHHHHHHHHHhCCCCCcee
Q 007056 204 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIP-DTVGITM-PTEFGKLIADIKANTPGIENVV 280 (620)
Q Consensus 204 ~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~-DTvG~~~-P~~v~~li~~l~~~~~~~~~v~ 280 (620)
+++.+.|++.|+-.=.|++ .+.|++..+++++.+..+..| .+. .+.-++- -..+..+|..+.++++ +|
T Consensus 7 ~~ll~~Ake~~yAvpAfN~-----~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~----vP 77 (286)
T COG0191 7 KELLDKAKENGYAVPAFNI-----NNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG----VP 77 (286)
T ss_pred HHHHHHHHHcCCceeeeee-----cCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC----CC
Confidence 6788999999985335665 678999999999999987644 333 2223333 3567788888888875 66
Q ss_pred EEEecCCCcchHHHHHHHHHHhcCcE--EeeccccccCCcCcc-cHHHHHHHHHhcc
Q 007056 281 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIGERAGNA-SLEEVVMAFKCRG 334 (620)
Q Consensus 281 i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~GlGERaGNa-~lEevv~~L~~~~ 334 (620)
+.+ |-|-|....-...|+++|.+- +|+|...+=| |. -+-+++...+..+
T Consensus 78 V~l--HlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE---Ni~~tkevv~~ah~~g 129 (286)
T COG0191 78 VAL--HLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE---NIAITKEVVEFAHAYG 129 (286)
T ss_pred EEE--ECCCCCCHHHHHHHHhcCCceEEecCCcCCHHH---HHHHHHHHHHHHHHcC
Confidence 765 568888999999999999876 6999998766 33 3345555555544
No 483
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=67.56 E-value=66 Score=34.92 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=72.0
Q ss_pred HHHHHHhHcCCCEEEEecCCCChh------------H-HHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHH
Q 007056 102 DIARQLAKLGVDIIEAGFPAASKE------------D-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 168 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGfP~~s~~------------d-~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ea 168 (620)
+.++.|.++|+..|.+|.=+.+++ + .++++.+.+. +-. . --...|.|+---..++++..++.
T Consensus 104 e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~-G~~--~--v~~dlI~GlPgqt~e~~~~tl~~ 178 (353)
T PRK05904 104 SQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN-GIY--N--ISCDFLYCLPILKLKDLDEVFNF 178 (353)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCC--c--EEEEEeecCCCCCHHHHHHHHHH
Confidence 446777788999999996333322 2 2344444442 110 0 01234667666778889888888
Q ss_pred HhcCCCCEEEEEe----cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Q 007056 169 VKYAKRPRIHTFI----ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF 220 (620)
Q Consensus 169 l~~ag~~~v~i~~----~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f 220 (620)
+...+.+.|.+|. +-++++.. ....+.++..++...+.+.+++.|+...+.
T Consensus 179 ~~~l~p~~is~y~L~~~~gT~l~~~-~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 233 (353)
T PRK05904 179 ILKHKINHISFYSLEIKEGSILKKY-HYTIDEDKEAEQLNYIKAKFNKLNYKRYEV 233 (353)
T ss_pred HHhcCCCEEEEEeeEecCCChHhhc-CCCCChHHHHHHHHHHHHHHHHcCCcEEec
Confidence 8888888887763 33444432 223466777888888999999999875443
No 484
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=67.31 E-value=1.6e+02 Score=30.56 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=95.9
Q ss_pred HHHHhHcCCCEEEEecC----CCChhHHHHHHHHHHHhcccccccCCccceEEeecccchh-------hH---HHHHHHH
Q 007056 104 ARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------DI---KTAWEAV 169 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGfP----~~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~-------dI---~~a~eal 169 (620)
+..-.+.|-|.||+-.- +-.|. +..++.+.+.+. .| +.++.|++.. ++ ...++.+
T Consensus 14 a~~A~~~GAdRiELc~~L~~GGlTPS-~g~i~~~~~~~~---------ip-v~vMIRPR~gdF~Ys~~E~~~M~~di~~~ 82 (248)
T PRK11572 14 ALTAQQAGADRIELCAAPKEGGLTPS-LGVLKSVRERVT---------IP-VHPIIRPRGGDFCYSDGEFAAMLEDIATV 82 (248)
T ss_pred HHHHHHcCCCEEEEccCcCCCCcCCC-HHHHHHHHHhcC---------CC-eEEEEecCCCCCCCCHHHHHHHHHHHHHH
Confidence 34456789999999431 11121 234555444321 12 3455566522 22 3345666
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS-PEDAGRSDRKFLYEILGEVIKVGATTL 248 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f~-~ed~~r~d~e~l~~~~~~~~~aGa~~I 248 (620)
+..|++.|.+=.=+.+-+ .+ .+...++++.++ |++ +.|. +-|..+ |+. +.++.+++.|.++|
T Consensus 83 ~~~GadGvV~G~L~~dg~------vD----~~~~~~Li~~a~--~~~-vTFHRAfD~~~-d~~---~al~~l~~lG~~rI 145 (248)
T PRK11572 83 RELGFPGLVTGVLDVDGH------VD----MPRMRKIMAAAG--PLA-VTFHRAFDMCA-NPL---NALKQLADLGVARI 145 (248)
T ss_pred HHcCCCEEEEeeECCCCC------cC----HHHHHHHHHHhc--CCc-eEEechhhccC-CHH---HHHHHHHHcCCCEE
Confidence 778999775533333322 12 234456666664 454 6673 334443 433 56778888999998
Q ss_pred eecCCccccC-HHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEEeeccc
Q 007056 249 NIPDTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 312 (620)
Q Consensus 249 ~L~DTvG~~~-P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~Vd~Ti~ 312 (620)
- |.|... ..+-.+.++.+.+...+.. +-.+ -|.-..|.-.=+..|++.||+|-.
T Consensus 146 L---TSGg~~~a~~g~~~L~~lv~~a~~~~-Im~G------gGV~~~Nv~~l~~tG~~~~H~s~~ 200 (248)
T PRK11572 146 L---TSGQQQDAEQGLSLIMELIAASDGPI-IMAG------AGVRLSNLHKFLDAGVREVHSSAG 200 (248)
T ss_pred E---CCCCCCCHHHHHHHHHHHHHhcCCCE-EEeC------CCCCHHHHHHHHHcCCCEEeeCCC
Confidence 8 666654 4555566666666554421 2222 455566765556899999998854
No 485
>PRK05927 hypothetical protein; Provisional
Probab=67.30 E-value=14 Score=40.21 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeecCCcccc---CHHHHHHHHHHHHHhCCCCCceeEEE---------ecCCCcchH
Q 007056 225 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGIT---MPTEFGKLIADIKANTPGIENVVIST---------HCQNDLGLS 292 (620)
Q Consensus 225 ~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~---~P~~v~~li~~l~~~~~~~~~v~i~~---------H~HND~GlA 292 (620)
.+..+++.+.+.++.+.+.|+..+.| +.|.- ..+.+.++++.+++.+|+ +.+ |.--..|+-
T Consensus 73 ~y~ls~eei~~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~-----l~~~~~s~~ei~~~~~~~G~~ 145 (350)
T PRK05927 73 AYLLSFDEFRSLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPS-----LHPHFFSAVEIAHAAQVSGIS 145 (350)
T ss_pred ccccCHHHHHHHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCC-----CcccCCCHHHHHHHHHhcCCC
Confidence 34567889999999999999999888 44443 234677889999988874 222 122335777
Q ss_pred HHHHHHHHH-hcCcEE
Q 007056 293 TANTIAGAC-AGARQV 307 (620)
Q Consensus 293 vANslaAv~-aGA~~V 307 (620)
.--.+..+. ||++.+
T Consensus 146 ~~e~l~~Lk~aGl~~l 161 (350)
T PRK05927 146 TEQALERLWDAGQRTI 161 (350)
T ss_pred HHHHHHHHHHcCcccC
Confidence 777777665 777544
No 486
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=67.26 E-value=98 Score=28.01 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=65.1
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCC
Q 007056 208 KFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQN 287 (620)
Q Consensus 208 ~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HN 287 (620)
.+++..|++ |.+... ..+++ ++++++.+.+++.|.|+=+.+...+ .+.++++.+++..++ ++.+.+-+=.
T Consensus 21 ~~l~~~G~~-vi~lG~---~vp~e---~~~~~a~~~~~d~V~iS~~~~~~~~-~~~~~~~~L~~~~~~--~i~i~~GG~~ 90 (122)
T cd02071 21 RALRDAGFE-VIYTGL---RQTPE---EIVEAAIQEDVDVIGLSSLSGGHMT-LFPEVIELLRELGAG--DILVVGGGII 90 (122)
T ss_pred HHHHHCCCE-EEECCC---CCCHH---HHHHHHHHcCCCEEEEcccchhhHH-HHHHHHHHHHhcCCC--CCEEEEECCC
Confidence 357788986 666432 46656 5677777899999999988764444 589999999987443 4555554310
Q ss_pred CcchHHHHHHHHHHhcCcEEeeccccccCCcCcccHHHHHHHHH
Q 007056 288 DLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 331 (620)
Q Consensus 288 D~GlAvANslaAv~aGA~~Vd~Ti~GlGERaGNa~lEevv~~L~ 331 (620)
...-.-...++|.+. .+. +.++.|+++..|+
T Consensus 91 ----~~~~~~~~~~~G~d~---~~~------~~~~~~~~~~~~~ 121 (122)
T cd02071 91 ----PPEDYELLKEMGVAE---IFG------PGTSIEEIIDKIR 121 (122)
T ss_pred ----CHHHHHHHHHCCCCE---EEC------CCCCHHHHHHHHh
Confidence 111223344678544 343 5678888887765
No 487
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=67.04 E-value=61 Score=31.71 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEE-ecCCCcchHHHHHHHHHHhcCcE
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST-HCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~-H~HND~GlAvANslaAv~aGA~~ 306 (620)
.+++.+.++++++.+.|++.|.+..+.+. ..+.++.+++.+|+ +.++. ..|+. ...-.|+++||+.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~-----~~~~i~~l~~~~~~---~~iGag~v~~~-----~~~~~a~~~Ga~~ 79 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPG-----ALEAIRALRKEFPE---ALIGAGTVLTP-----EQADAAIAAGAQF 79 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChh-----HHHHHHHHHHHCCC---CEEEEEeCCCH-----HHHHHHHHcCCCE
Confidence 35789999999999999999999876443 44488889988873 56665 44543 3567889999999
Q ss_pred Ee
Q 007056 307 VE 308 (620)
Q Consensus 307 Vd 308 (620)
|+
T Consensus 80 i~ 81 (190)
T cd00452 80 IV 81 (190)
T ss_pred EE
Confidence 96
No 488
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=66.88 E-value=1.4e+02 Score=30.04 Aligned_cols=171 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHhHcCCCEEEEecCCCChh---HHHHHHHHHHHhcccccccCCccceEEeecccchhh----------HHHHHHHHh
Q 007056 104 ARQLAKLGVDIIEAGFPAASKE---DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD----------IKTAWEAVK 170 (620)
Q Consensus 104 a~~L~~~Gvd~IEvGfP~~s~~---d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~d----------I~~a~eal~ 170 (620)
+..-.+.|.|.||+-.--..-. ....++.+.+... ..+.++.|.+..| +...++.++
T Consensus 13 a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~----------ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~ 82 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVD----------IPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLR 82 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTT----------SEEEEE--SSSS-S---HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcC----------CceEEEECCCCCCccCCHHHHHHHHHHHHHHH
Q ss_pred cCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 007056 171 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKVGATTLN 249 (620)
Q Consensus 171 ~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f-~~ed~~r~d~e~l~~~~~~~~~aGa~~I~ 249 (620)
..|++.+.+=.=+.|-.+. .+...+.++.++ |++ +.| -+-|.... ..+.++.+++.|.++|-
T Consensus 83 ~~GadG~VfG~L~~dg~iD----------~~~~~~Li~~a~--~~~-~tFHRAfD~~~d----~~~al~~L~~lG~~rVL 145 (201)
T PF03932_consen 83 ELGADGFVFGALTEDGEID----------EEALEELIEAAG--GMP-VTFHRAFDEVPD----PEEALEQLIELGFDRVL 145 (201)
T ss_dssp HTT-SEEEE--BETTSSB-----------HHHHHHHHHHHT--TSE-EEE-GGGGGSST----HHHHHHHHHHHT-SEEE
T ss_pred HcCCCeeEEEeECCCCCcC----------HHHHHHHHHhcC--CCe-EEEeCcHHHhCC----HHHHHHHHHhcCCCEEE
Q ss_pred ecCCcccc-CHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHH-hcCcEEeec
Q 007056 250 IPDTVGIT-MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC-AGARQVEVT 310 (620)
Q Consensus 250 L~DTvG~~-~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~-aGA~~Vd~T 310 (620)
|.|.. ...+=.+.++.+.+...+.-.+..+ -|.-..|.-.-++ .|+++||+|
T Consensus 146 ---TSGg~~~a~~g~~~L~~lv~~a~~~i~Im~G------gGv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 146 ---TSGGAPTALEGIENLKELVEQAKGRIEIMPG------GGVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp ---ESTTSSSTTTCHHHHHHHHHHHTTSSEEEEE------SS--TTTHHHHHHHHT-SEEEET
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHcCCCcEEEec------CCCCHHHHHHHHHhhCCeEEeec
No 489
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=66.88 E-value=45 Score=33.39 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEe
Q 007056 205 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 284 (620)
Q Consensus 205 ~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H 284 (620)
-.+++|+++|+..+.|.. ..+....+|=.++++.+.+.++|.|.|+==.=++.|.-+..+-..+..-.|..-..-=|.|
T Consensus 41 ~~lerA~~~gIpt~~~~~-k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h 119 (200)
T COG0299 41 YALERAAKAGIPTVVLDR-KEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLH 119 (200)
T ss_pred HHHHHHHHcCCCEEEecc-ccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCch
Confidence 467889999998655655 2333445677788999999999999998666666776554443333322221100011445
Q ss_pred cCCCcchHHHHHHHHHHhcCcE
Q 007056 285 CQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 285 ~HND~GlAvANslaAv~aGA~~ 306 (620)
.| ..|+++|.+.
T Consensus 120 ~~----------~~A~~aG~k~ 131 (200)
T COG0299 120 AH----------EQALEAGVKV 131 (200)
T ss_pred HH----------HHHHHcCCCc
Confidence 55 5688888875
No 490
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=66.87 E-value=53 Score=34.77 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcEE-eecCC-ccccC-HHHHHHHHHHHHHhCCCCCce
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIPDT-VGITM-PTEFGKLIADIKANTPGIENV 279 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa~~I-~L~DT-vG~~~-P~~v~~li~~l~~~~~~~~~v 279 (620)
..++++.|++.|+-.-.|+. .+.+.+..+++++.+.+...| .+... ..++. ...+..++..+.++.+- ++
T Consensus 6 ~k~lL~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~v 78 (286)
T PRK08610 6 MKEMLIDAKENGYAVGQYNL-----NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNI--TI 78 (286)
T ss_pred HHHHHHHHHHCCceEEEEEE-----CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC--CC
Confidence 45778889999875346665 588999999999999987654 44332 23333 34577788877776531 25
Q ss_pred eEEEecCCCcchHHHHHHHHHHhcCcE--Eeeccccc
Q 007056 280 VISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 314 (620)
Q Consensus 280 ~i~~H~HND~GlAvANslaAv~aGA~~--Vd~Ti~Gl 314 (620)
|+.+|. |-|.-......|+++|.+- +|+|-..+
T Consensus 79 PV~lHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ 113 (286)
T PRK08610 79 PVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHSPF 113 (286)
T ss_pred CEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 777654 6666788889999999976 58876654
No 491
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=66.83 E-value=1e+02 Score=33.57 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHc-CCc-EEeecCCccccCHHHH
Q 007056 203 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GAT-TLNIPDTVGITMPTEF 262 (620)
Q Consensus 203 ~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~a-Ga~-~I~L~DTvG~~~P~~v 262 (620)
+.+.++.+.+.|...+.++- ..+...|+.+.++++.+.+. +.. .+-.=|+.|.++.+.+
T Consensus 144 l~~~~~~~~~~Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANal 204 (365)
T TIGR02660 144 LVELAEVAAEAGADRFRFAD-TVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTL 204 (365)
T ss_pred HHHHHHHHHHcCcCEEEEcc-cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 33444444555655333321 24455666666666665543 221 2333366666654433
No 492
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=66.66 E-value=91 Score=34.42 Aligned_cols=113 Identities=18% Similarity=0.275 Sum_probs=70.5
Q ss_pred HHHHHHhHcCCCEEEEecCCCCh------------hH-HHHHHHHHHHhcccccccCCc-cceEEeecccchhhHHHHHH
Q 007056 102 DIARQLAKLGVDIIEAGFPAASK------------ED-FEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWE 167 (620)
Q Consensus 102 ~Ia~~L~~~Gvd~IEvGfP~~s~------------~d-~e~v~~i~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~e 167 (620)
+.++.|.++||+.|.+|.=+.++ ++ .++++.+.+. +-. .+ ..-|.|+---..++++..++
T Consensus 116 e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~-G~~-----~v~~dlI~GlPgqt~e~~~~tl~ 189 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQA-GIE-----NFSLDLISGLPHQTLEDWQASLE 189 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-CCC-----eEEEEeecCCCCCCHHHHHHHHH
Confidence 34567788999999999533232 22 2344444432 110 01 12455665557778888888
Q ss_pred HHhcCCCCEEEEE----ecCCHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCCEEEE
Q 007056 168 AVKYAKRPRIHTF----IATSGIHMEHKLR----KTKQQVVEIARSMVKFARSLGCDDVEF 220 (620)
Q Consensus 168 al~~ag~~~v~i~----~~~Sd~h~~~~l~----~t~ee~l~~~~~~v~~a~~~G~~~V~f 220 (620)
.+...+.+.|.++ .+-++++....-+ .+.++..++...+.+.+++.|+...+.
T Consensus 190 ~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 250 (400)
T PRK07379 190 AAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYEI 250 (400)
T ss_pred HHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceeee
Confidence 8777888888776 3344555444333 256777888888889999999865433
No 493
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=66.50 E-value=1.5e+02 Score=29.80 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhHcCCCEEEEe---cCC-CChhHHHHHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHHhcCC
Q 007056 98 KEKLDIARQLAKLGVDIIEAG---FPA-ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 173 (620)
Q Consensus 98 ~~Kl~Ia~~L~~~Gvd~IEvG---fP~-~s~~d~e~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal~~ag 173 (620)
.+-+++++.+.+.|++.|=+- .-. ..+.+++.++.+++.... |.+.+=+-...+|++..++ .|
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~---------pv~~~ggi~~~~d~~~~~~----~G 96 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFM---------PLTVGGGIRSLEDAKKLLS----LG 96 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCC---------CEEEECCCCCHHHHHHHHH----cC
Confidence 367889999999999955442 211 223457788888875321 3333333334556665443 47
Q ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCE--EEEcCCC------------CC-CCCHHHHHHHHH
Q 007056 174 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD--VEFSPED------------AG-RSDRKFLYEILG 238 (620)
Q Consensus 174 ~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~--V~f~~ed------------~~-r~d~e~l~~~~~ 238 (620)
++.|-+ .+ ..+ +..+.+.++++. .|-.. +.++.-. .+ ........++++
T Consensus 97 ~~~vil--g~-~~l----------~~~~~~~~~~~~---~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (232)
T TIGR03572 97 ADKVSI--NT-AAL----------ENPDLIEEAARR---FGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAR 160 (232)
T ss_pred CCEEEE--Ch-hHh----------cCHHHHHHHHHH---cCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHH
Confidence 777633 21 111 112233333332 23221 2222111 00 011223467888
Q ss_pred HHHHcCCcEEeecC--CccccCHHHHHHHHHHHHHhC
Q 007056 239 EVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANT 273 (620)
Q Consensus 239 ~~~~aGa~~I~L~D--TvG~~~P~~v~~li~~l~~~~ 273 (620)
.+.+.|++.|.+-| ..|.... --.++++.+++..
T Consensus 161 ~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~ 196 (232)
T TIGR03572 161 EAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV 196 (232)
T ss_pred HHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC
Confidence 88999999999888 3333222 2356777777765
No 494
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=66.43 E-value=1.3e+02 Score=31.95 Aligned_cols=144 Identities=13% Similarity=0.029 Sum_probs=74.4
Q ss_pred ecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHc-CCCEEEE--cCCCCCCCC
Q 007056 154 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKL-RKTKQQVVEIARSMVKFARSL-GCDDVEF--SPEDAGRSD 229 (620)
Q Consensus 154 ~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l-~~t~ee~l~~~~~~v~~a~~~-G~~~V~f--~~ed~~r~d 229 (620)
++=..++++..+.+.++.+|.+.|.+-.+...-++..+. |....+..+.+.+.++.+++. ++. |.+ .. +...+
T Consensus 69 l~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~p-v~vKir~--g~~~~ 145 (319)
T TIGR00737 69 LFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIP-VTVKIRI--GWDDA 145 (319)
T ss_pred EeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCC-EEEEEEc--ccCCC
Confidence 333456777777776777899988876554322222222 222233345555666665543 333 322 21 00111
Q ss_pred HHHHHHHHHHHHHcCCcEEeecC-Cc--cccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchH-HHHHHHHH-HhcC
Q 007056 230 RKFLYEILGEVIKVGATTLNIPD-TV--GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGA-CAGA 304 (620)
Q Consensus 230 ~e~l~~~~~~~~~aGa~~I~L~D-Tv--G~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlA-vANslaAv-~aGA 304 (620)
.....++++.+.++|++.|.+-- |. |+.-| -..+.++.+++.++ ++|.. +-|.. ..-+..++ ..||
T Consensus 146 ~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~-~~~~~i~~i~~~~~----ipvi~----nGgI~~~~da~~~l~~~ga 216 (319)
T TIGR00737 146 HINAVEAARIAEDAGAQAVTLHGRTRAQGYSGE-ANWDIIARVKQAVR----IPVIG----NGDIFSPEDAKAMLETTGC 216 (319)
T ss_pred cchHHHHHHHHHHhCCCEEEEEcccccccCCCc-hhHHHHHHHHHcCC----CcEEE----eCCCCCHHHHHHHHHhhCC
Confidence 23456788888999999987731 11 12112 23567777777653 34432 11222 23344555 3577
Q ss_pred cEEee
Q 007056 305 RQVEV 309 (620)
Q Consensus 305 ~~Vd~ 309 (620)
+.|-.
T Consensus 217 d~Vmi 221 (319)
T TIGR00737 217 DGVMI 221 (319)
T ss_pred CEEEE
Confidence 77644
No 495
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=66.32 E-value=1.3e+02 Score=31.50 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHcCC---cEEeecCCccccCHHHHHH
Q 007056 202 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA---TTLNIPDTVGITMPTEFGK 264 (620)
Q Consensus 202 ~~~~~v~~a~~~G~~~V~f~~ed~~r~d~e~l~~~~~~~~~aGa---~~I~L~DTvG~~~P~~v~~ 264 (620)
.+.+.++.+.+.|.+.+.+.- ..+...|..+.++++.+.+.-. -.+-.=||.|.++-+.+..
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~D-T~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA 212 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPD-TLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAA 212 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecC-CCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 445556666777877555532 3667788888888888876421 1344448888876654443
No 496
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=66.08 E-value=65 Score=33.71 Aligned_cols=91 Identities=11% Similarity=-0.033 Sum_probs=53.3
Q ss_pred HhcCCCCEEEEEecCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCC-CCHHHHHHHH-HHH
Q 007056 169 VKYAKRPRIHTFIATSGIHMEHKLR------KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYEIL-GEV 240 (620)
Q Consensus 169 l~~ag~~~v~i~~~~Sd~h~~~~l~------~t~ee~l~~~~~~v~~a~~~G~~~V~f~~ed~~r-~d~e~l~~~~-~~~ 240 (620)
+..+|++.|-+ .+.-.-..+| .|.+|++..+...++-+ ....|..+.+..+. .+++...+-+ +.+
T Consensus 31 ~e~aG~d~i~v----Gds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~---~~p~vvaD~pfg~y~~~~~~av~~a~r~~ 103 (264)
T PRK00311 31 FDEAGVDVILV----GDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA---PRALVVADMPFGSYQASPEQALRNAGRLM 103 (264)
T ss_pred HHHcCCCEEEE----CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCcEEEeCCCCCccCCHHHHHHHHHHHH
Confidence 34568888742 2222222343 56777766555444332 22224455554433 6777655554 444
Q ss_pred HHcCCcEEeecCCccccCHHHHHHHHHHHHHh
Q 007056 241 IKVGATTLNIPDTVGITMPTEFGKLIADIKAN 272 (620)
Q Consensus 241 ~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~ 272 (620)
.++||+.|+|-|. .++.+.|+.+++.
T Consensus 104 ~~aGa~aVkiEdg------~~~~~~I~al~~a 129 (264)
T PRK00311 104 KEAGAHAVKLEGG------EEVAETIKRLVER 129 (264)
T ss_pred HHhCCeEEEEcCc------HHHHHHHHHHHHC
Confidence 4599999999995 4677788888754
No 497
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=65.96 E-value=73 Score=32.04 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 228 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 228 ~d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
.+++...++++++.+.|.+.|-+.=+. | ...+.|+.+++.+| ++.|+...==| ...+..|+++||+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t----~-~a~~~i~~l~~~~~---~~~vGAGTVl~----~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT----P-VALDAIRLLRKEVP---DALIGAGTVLN----PEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----c-cHHHHHHHHHHHCC---CCEEEEEeCCC----HHHHHHHHHcCCCEE
Confidence 367899999999999999988776433 4 35668888888887 37788776554 455788999999998
No 498
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=65.89 E-value=1.9e+02 Score=30.80 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=73.6
Q ss_pred HHHHHHHHhHcCCCEEEEecCCC-----ChhHHH-----HHHHHHHHhcccccccCCccceEEeecccchhhHHHHHHHH
Q 007056 100 KLDIARQLAKLGVDIIEAGFPAA-----SKEDFE-----AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 169 (620)
Q Consensus 100 Kl~Ia~~L~~~Gvd~IEvGfP~~-----s~~d~e-----~v~~i~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~eal 169 (620)
-+++++.+.++|++.|-+.-|.+ +|++|+ +.+++.+.+... +.+.-+|. +....++.+
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~--------~~ilH~cG----~~~~~l~~~ 249 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL--------PTILHICG----DLTSILEEM 249 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC--------CcEEEECC----CchHHHHHH
Confidence 35567777889999998875543 566653 345666654211 11222221 223445556
Q ss_pred hcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE---cC-CCCCCCCHHHHHHHHHHHHHcCC
Q 007056 170 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SP-EDAGRSDRKFLYEILGEVIKVGA 245 (620)
Q Consensus 170 ~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~G~~~V~f---~~-ed~~r~d~e~l~~~~~~~~~aGa 245 (620)
.+.|.+.+++--.. +..+. .+..|-..+.. ++ ..-...+++.+.+.++.+++.|.
T Consensus 250 ~~~g~d~~~~d~~~-----------dl~~~----------~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~g~ 308 (339)
T PRK06252 250 ADCGFDGISIDEKV-----------DVKTA----------KENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLEDGV 308 (339)
T ss_pred HhcCCCeeccCCCC-----------CHHHH----------HHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 66677776542211 21111 11233221222 22 11224577888888888888777
Q ss_pred cEEeecCCcc-ccCHHHHHHHHHHHHH
Q 007056 246 TTLNIPDTVG-ITMPTEFGKLIADIKA 271 (620)
Q Consensus 246 ~~I~L~DTvG-~~~P~~v~~li~~l~~ 271 (620)
++++..-.+- ...|+.+..+++.+++
T Consensus 309 ~Il~~gcgi~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 309 DILAPGCGIAPKTPLENIKAMVEARKE 335 (339)
T ss_pred CEEcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 7666532222 2234567777777775
No 499
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=65.85 E-value=1.4e+02 Score=29.12 Aligned_cols=167 Identities=12% Similarity=-0.027 Sum_probs=85.9
Q ss_pred EEeecccchhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCC
Q 007056 151 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRS 228 (620)
Q Consensus 151 i~~~~r~~~~dI~~a~eal~~ag~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--G~~~V~f~~ed~~r~ 228 (620)
+.++-+.+.++....++++.+. ++.+.+-.+. - ...-.+.++.+++. +.. +..... -.
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~---~------------~~~g~~~i~~i~~~~~~~~-i~~~~~---v~ 63 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDG-VDIIEAGTPL---I------------KSEGMEAVRALREAFPDKI-IVADLK---TA 63 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHH---H------------HHhCHHHHHHHHHHCCCCE-EEEEEE---ec
Confidence 3445455566666666776665 7776652221 0 11223455555554 322 322211 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEE--ecCCCcchHHHHHHHHHHhcCcE
Q 007056 229 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST--HCQNDLGLSTANTIAGACAGARQ 306 (620)
Q Consensus 229 d~e~l~~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~--H~HND~GlAvANslaAv~aGA~~ 306 (620)
+++ ...++.+.++|++.+.+.+.. .|....++++.++++ + +.+++ +.=++ ....+.++..|+++
T Consensus 64 ~~~--~~~~~~~~~aGad~i~~h~~~---~~~~~~~~i~~~~~~--g---~~~~v~~~~~~t----~~e~~~~~~~~~d~ 129 (202)
T cd04726 64 DAG--ALEAEMAFKAGADIVTVLGAA---PLSTIKKAVKAAKKY--G---KEVQVDLIGVED----PEKRAKLLKLGVDI 129 (202)
T ss_pred ccc--HHHHHHHHhcCCCEEEEEeeC---CHHHHHHHHHHHHHc--C---CeEEEEEeCCCC----HHHHHHHHHCCCCE
Confidence 221 124577889999999999876 356677888888864 2 34543 33222 23344578889998
Q ss_pred EeeccccccCCcC-cccHHHHHHHHHhccccccCccccCCChhhHHHH
Q 007056 307 VEVTINGIGERAG-NASLEEVVMAFKCRGEHILGGLYTGINTRHIVMA 353 (620)
Q Consensus 307 Vd~Ti~GlGERaG-Na~lEevv~~L~~~~~~~~~G~~t~idl~~L~~~ 353 (620)
|=.....-+...| ....+.+ ..+....+ ..-...-||+.+.+.++
T Consensus 130 v~~~~~~~~~~~~~~~~~~~i-~~~~~~~~-~~i~~~GGI~~~~i~~~ 175 (202)
T cd04726 130 VILHRGIDAQAAGGWWPEDDL-KKVKKLLG-VKVAVAGGITPDTLPEF 175 (202)
T ss_pred EEEcCcccccccCCCCCHHHH-HHHHhhcC-CCEEEECCcCHHHHHHH
Confidence 7653322223333 3344443 33432111 11134557776654433
No 500
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=65.81 E-value=1.1e+02 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCcEEeecCCccccCHHHHHHHHHHHHHhCCCCCceeEEEecCCCcchHHHHHHHHHHhcCcEE
Q 007056 235 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 307 (620)
Q Consensus 235 ~~~~~~~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~~H~HND~GlAvANslaAv~aGA~~V 307 (620)
+.++.+.++|++.|.+.+ ..+++..+.++.+++.-. ...+.+.+|+. ...+.++..+++.|
T Consensus 70 ~~~~~~~~~gadgv~vh~----~~~~~~~~~~~~~~~~g~---~~~~~~~~~t~-----~e~~~~~~~~~d~i 130 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHP----EASEHIHRLLQLIKDLGA---KAGIVLNPATP-----LEFLEYVLPDVDLV 130 (210)
T ss_pred HHHHHHHHcCCCEEEEcc----CCchhHHHHHHHHHHcCC---cEEEEECCCCC-----HHHHHHHHhhCCEE
Confidence 346677799999999876 224566677777776422 35677778865 33455666778875
Done!